BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005179
(710 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224119914|ref|XP_002318194.1| predicted protein [Populus trichocarpa]
gi|222858867|gb|EEE96414.1| predicted protein [Populus trichocarpa]
Length = 948
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/655 (74%), Positives = 562/655 (85%), Gaps = 10/655 (1%)
Query: 35 NPMSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVI 94
+P SS F IS IS K Q + N+ K+R+I+ +S+VFERFTERA+KAV+
Sbjct: 42 SPFSSCFGIS-ISQKHQNRKTLLLKRFNSS------KKRRILQVSAVFERFTERAIKAVV 94
Query: 95 FSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWH-STNNQDT 153
FSQREA++LGKDMVFTQHLLLGLI EDR PNGFL SGI IDKARE V SIW +++ +
Sbjct: 95 FSQREARALGKDMVFTQHLLLGLIIEDRDPNGFLGSGIKIDKAREVVKSIWQRESDSAEA 154
Query: 154 DDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGR 213
+ ++G+ S + +PFS STKRVFEAA+EYSR+ G+NFIAPEHIA+GLFTVDDGSAGR
Sbjct: 155 SELVSKGERGVSHSDVPFSASTKRVFEAAIEYSRTMGHNFIAPEHIAIGLFTVDDGSAGR 214
Query: 214 VLKRLGVDVNHLAAVAVSRLQGELAKEGREPSL-AKGVRENSISGKTAALKSPGRTR-AS 271
VL RLGVD + LAA+A+++LQGEL K+GREPS+ +KG S+S + AAL+S +T+ S
Sbjct: 215 VLNRLGVDGDALAAIAITKLQGELVKDGREPSVESKGKHGKSVSKRAAALRSYEKTKEKS 274
Query: 272 ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGL 331
AL QFCVDLTARASE IDPVIGR +EI+RI+QILCRRTKNNPILLGESGVGKTAIAEGL
Sbjct: 275 ALAQFCVDLTARASEGRIDPVIGRHSEIERIVQILCRRTKNNPILLGESGVGKTAIAEGL 334
Query: 332 AIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391
AI+I QA++PVFLL KR+MSLD+GLL+AGAKERGELEARVT+LI EIQK GDVILFIDEV
Sbjct: 335 AIKIAQADIPVFLLEKRVMSLDVGLLIAGAKERGELEARVTSLIREIQKEGDVILFIDEV 394
Query: 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQP 451
HTL+G+GTVGRGNKG+GLDI+N+LKPSLGRGELQCIASTT DE+RT FE DKALARRFQP
Sbjct: 395 HTLVGTGTVGRGNKGSGLDIANILKPSLGRGELQCIASTTLDEYRTHFEIDKALARRFQP 454
Query: 452 VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511
VLI+EPSQEDA+RILLGLR++YEAHHNC+FT EAINAAVHLSARYI+DRYLPDKAIDL+D
Sbjct: 455 VLINEPSQEDAIRILLGLRQRYEAHHNCRFTPEAINAAVHLSARYIADRYLPDKAIDLID 514
Query: 512 EAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDT 571
EAGSRA IE ++RKKEQQT ILSK PDDYWQEIRTVQAMHEVV SRL D ++SM +
Sbjct: 515 EAGSRARIEAYRRKKEQQTFILSKTPDDYWQEIRTVQAMHEVVLASRLANDCSLSSMDGS 574
Query: 572 SEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRV 631
EI +ESSLP AS+ DEPAVVGPDDIAAVASLWSGIPVQQ+TADER LVGLEE+L+KRV
Sbjct: 575 GEITIESSLPPASNADEPAVVGPDDIAAVASLWSGIPVQQLTADERKFLVGLEEELRKRV 634
Query: 632 IGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
IGQDEAVAAISRAVKRSRVGLKDP+RP AAMLFCGPTGVGKTEL K+LA YFGS
Sbjct: 635 IGQDEAVAAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALARNYFGS 689
>gi|387169509|gb|AFJ66170.1| hypothetical protein 11M19.14 [Arabidopsis halleri]
Length = 946
Score = 968 bits (2503), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/649 (74%), Positives = 549/649 (84%), Gaps = 7/649 (1%)
Query: 40 FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQRE 99
+ IS+ + + F S T N RKR+K PIS+VFERFTERA++A+IFSQ+E
Sbjct: 42 YLGISLSNRTIHRFSSTPT----NFRRFPQRKRKKFTPISAVFERFTERAIRAIIFSQKE 97
Query: 100 AKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQ 159
AKSLGKDMV+TQHLLLGLIAEDR P GFL SGITIDKAREAV SIW N+ D+
Sbjct: 98 AKSLGKDMVYTQHLLLGLIAEDRDPQGFLGSGITIDKAREAVWSIWDEANS-DSKQEEVS 156
Query: 160 GKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLG 219
+S + MPFSISTKRVFEAAVEYSR+ +IAPEHIA+GLFTVDDGSAGRVLKRLG
Sbjct: 157 STSYSKSTDMPFSISTKRVFEAAVEYSRTMDCQYIAPEHIAVGLFTVDDGSAGRVLKRLG 216
Query: 220 VDVNHLAAVAVSRLQGELAKEGREPSLA-KGVRENSISGKTAALKSPGRTRA-SALEQFC 277
++N L A A++RL+GE+AK+GREPS + KG E SG+ + G+ +A + LEQFC
Sbjct: 217 ANMNLLTAAALTRLKGEIAKDGREPSSSSKGSYEAPPSGRIVGSGTGGKAKAKTVLEQFC 276
Query: 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337
VDLTARASE LIDPVIGRE E+QR+IQILCRRTKNNPILLGE+GVGKTAIAEGLAI I +
Sbjct: 277 VDLTARASEGLIDPVIGREKEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAE 336
Query: 338 AEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS 397
A+ P FLL+KRIMSLD+GLLMAGAKERGELEARVT LISE++KSG VILFIDEVHTLIGS
Sbjct: 337 AKAPGFLLTKRIMSLDIGLLMAGAKERGELEARVTALISEVKKSGKVILFIDEVHTLIGS 396
Query: 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEP 457
GTVGRGNKG+GLDI+NLLKPSLGRGELQCIASTT DE R+QFEKDKALARRFQPVLI+EP
Sbjct: 397 GTVGRGNKGSGLDIANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLINEP 456
Query: 458 SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517
S+EDAV+ILLGLREKYEAHHNCK+T+EAI+AAV+LS+RYI+DR+LPDKAIDL+DEAGSRA
Sbjct: 457 SEEDAVKILLGLREKYEAHHNCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRA 516
Query: 518 HIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVE 577
IE F++KKE CILSKPP+DYWQEI+TVQAMHEVV SR K DD A ++ E+V E
Sbjct: 517 RIEAFRKKKEDAICILSKPPNDYWQEIKTVQAMHEVVLSSRQKQDDGDAIADESGELVEE 576
Query: 578 SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEA 637
SSLP AS DDEP +VGPDDIAAVAS WSGIPVQQITADERMLL+GLE+QL+ RV+GQDEA
Sbjct: 577 SSLPPASGDDEPILVGPDDIAAVASAWSGIPVQQITADERMLLMGLEDQLRSRVVGQDEA 636
Query: 638 VAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
VAAISRAVKRSRVGLKDP+RP AAMLFCGPTGVGKTEL K+LAA YFGS
Sbjct: 637 VAAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGS 685
>gi|297792419|ref|XP_002864094.1| hypothetical protein ARALYDRAFT_495173 [Arabidopsis lyrata subsp.
lyrata]
gi|297309929|gb|EFH40353.1| hypothetical protein ARALYDRAFT_495173 [Arabidopsis lyrata subsp.
lyrata]
Length = 946
Score = 961 bits (2485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/649 (73%), Positives = 548/649 (84%), Gaps = 7/649 (1%)
Query: 40 FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQRE 99
+ IS+ + + F + T RKR+K PIS+VFERFTERA++A+IFSQ+E
Sbjct: 42 YLGISLSNRTIHRFSTTPTKFRR----FPQRKRKKFTPISAVFERFTERAIRAIIFSQKE 97
Query: 100 AKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQ 159
AKSLGKDMV+TQHLLLGLIAEDR P GFL SGITIDKAREAV SIW N+ D+
Sbjct: 98 AKSLGKDMVYTQHLLLGLIAEDRDPQGFLGSGITIDKAREAVWSIWDEANS-DSKQEEVS 156
Query: 160 GKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLG 219
+S + MPFSISTKRVFEAAVEYSR+ +IAPEHIA+GLFTVDDGSAGRVLKRLG
Sbjct: 157 STSYSKSTDMPFSISTKRVFEAAVEYSRTMDCQYIAPEHIAVGLFTVDDGSAGRVLKRLG 216
Query: 220 VDVNHLAAVAVSRLQGELAKEGREPSLA-KGVRENSISGKTAALKSPGRTRA-SALEQFC 277
++N L A A++RL+GE+AK+GREPS + KG + +G+ A + G+ +A + LEQFC
Sbjct: 217 ANMNLLTAAALTRLKGEIAKDGREPSSSSKGSFQAPPAGRIAGSGTGGKAKAKNVLEQFC 276
Query: 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337
VDLTARASE LIDPVIGRE E+QR+IQILCRRTKNNPILLGE+GVGKTAIAEGLAI I +
Sbjct: 277 VDLTARASEGLIDPVIGREKEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAE 336
Query: 338 AEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS 397
A P FLL+KRIMSLD+GLLMAGAKERGELEARVT LISE++KSG VILFIDEVHTLIGS
Sbjct: 337 ANAPGFLLTKRIMSLDIGLLMAGAKERGELEARVTALISEVKKSGKVILFIDEVHTLIGS 396
Query: 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEP 457
GTVGRGNKG+GLDI+NLLKPSLGRGELQCIASTT DE R+QFEKDKALARRFQPVLI+EP
Sbjct: 397 GTVGRGNKGSGLDIANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLINEP 456
Query: 458 SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517
S+EDAV+ILLGLREKYEAHHNCK+T+EAI+AAV+LS+RYI+DR+LPDKAIDL+DEAGSRA
Sbjct: 457 SEEDAVKILLGLREKYEAHHNCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRA 516
Query: 518 HIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVE 577
IE F++KKE CILSKPP+DYWQEI+TVQAMHEVV SR K DD A ++ E+V E
Sbjct: 517 RIEAFRKKKEDAICILSKPPNDYWQEIKTVQAMHEVVLSSRQKQDDGDAIADESGELVEE 576
Query: 578 SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEA 637
SSLP A+ DDEP +VGPDDIAAVAS WSGIPVQQITADERMLL+GLE+QL+ RV+GQDEA
Sbjct: 577 SSLPPAAGDDEPILVGPDDIAAVASAWSGIPVQQITADERMLLMGLEDQLRSRVVGQDEA 636
Query: 638 VAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
VAAISRAVKRSRVGLKDP+RP AAMLFCGPTGVGKTEL K+LAA YFGS
Sbjct: 637 VAAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGS 685
>gi|387169538|gb|AFJ66198.1| hypothetical protein 7G9.17 [Boechera stricta]
Length = 943
Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/649 (73%), Positives = 546/649 (84%), Gaps = 7/649 (1%)
Query: 40 FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQRE 99
+ IS+ + + F ++ N RKR+K PIS+VFERFTERA++A+IFSQ+E
Sbjct: 43 YLGISLSNRTIHRF----STTPANFRRFPGRKRKKFTPISAVFERFTERAIRAIIFSQKE 98
Query: 100 AKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQ 159
AKSLGKDMV+TQHLLLGLIAEDR P GFL SGITIDKAREAV SIW N D+
Sbjct: 99 AKSLGKDMVYTQHLLLGLIAEDRDPQGFLGSGITIDKAREAVWSIWDEAN-PDSKQEEVS 157
Query: 160 GKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLG 219
+S + MPFSISTKRVFEAAVEYSR+ +IAPEHIA+GLFTVDDGSAGRVLKRLG
Sbjct: 158 STSYSKSTDMPFSISTKRVFEAAVEYSRTMECQYIAPEHIAVGLFTVDDGSAGRVLKRLG 217
Query: 220 VDVNHLAAVAVSRLQGELAKEGREPSLA-KGVRENSISGKTAALKSPGRTRA-SALEQFC 277
++N L A A++RL+GE+AK+GREPS + K + S +G+ A + G+T+A S LEQFC
Sbjct: 218 ANMNLLTAAALTRLKGEMAKDGREPSSSSKRSFDASPNGRIAGSGTGGKTKAKSVLEQFC 277
Query: 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337
VDLTARASE LIDPVIGRE E+QR+IQILCRRTKNNPILLGE+GVGKTAIAEGLAI I +
Sbjct: 278 VDLTARASEGLIDPVIGREKEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAE 337
Query: 338 AEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS 397
A P FLL+KRIMSLD+GLLMAGAKERGELEARVT LISE++KSG VILFIDEVHTLIGS
Sbjct: 338 AYAPGFLLTKRIMSLDIGLLMAGAKERGELEARVTALISEVKKSGKVILFIDEVHTLIGS 397
Query: 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEP 457
GTVGRGNKG+GLDI+NLLKPSLGRGELQCIASTT DE R+QFEKDKALARRFQPVLI EP
Sbjct: 398 GTVGRGNKGSGLDIANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLIDEP 457
Query: 458 SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517
S+EDAV+ILLGLREKYE HHNCK+T+EAI+AAV+LS+RYI+DR+LPDKAIDL+DEAGSRA
Sbjct: 458 SEEDAVKILLGLREKYEVHHNCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRA 517
Query: 518 HIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVE 577
IE F++KKE CILSKPPDDYWQEIRTVQAMHEVV SR K DD A ++ E+V E
Sbjct: 518 RIEAFRKKKEDAVCILSKPPDDYWQEIRTVQAMHEVVLSSRQKQDDGDAIADESGELVEE 577
Query: 578 SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEA 637
SSLP + DDEP +VGPDDIAAVAS WSGIPVQQITADERMLL+GLEEQL+ RV+GQDEA
Sbjct: 578 SSLPPIAGDDEPILVGPDDIAAVASAWSGIPVQQITADERMLLMGLEEQLRSRVVGQDEA 637
Query: 638 VAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
VAAISRAVKRSRVGLKDP+RP +AMLFCGPTGVGKTEL K+LAA YFGS
Sbjct: 638 VAAISRAVKRSRVGLKDPDRPISAMLFCGPTGVGKTELTKALAANYFGS 686
>gi|312282443|dbj|BAJ34087.1| unnamed protein product [Thellungiella halophila]
Length = 950
Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/696 (69%), Positives = 573/696 (82%), Gaps = 17/696 (2%)
Query: 1 MEV-STCSPLSVNSRCLFAN-----QPPPPRHRLPPLQYVNPMSSFFNISMISHKVQFFH 54
MEV +T SPL+++SR L ++ P + SS+ IS+ + + F
Sbjct: 1 MEVLTTSSPLTLHSRRLASSSAHRFDSSSPVASFAASSLSSFASSYLGISLSNRTIHRF- 59
Query: 55 SNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLL 114
S SN P ++R+K PIS+VFERFTERA++A+IFSQ+EAKSLGKDMV+TQHLL
Sbjct: 60 STSPSNFRRFPP---KRRKKFTPISAVFERFTERAIRAIIFSQKEAKSLGKDMVYTQHLL 116
Query: 115 LGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQ---GKPFSSAAKMPF 171
LGLIAEDR P GFL SGITIDKAREAV SIW N+ D++ + Q +S + MPF
Sbjct: 117 LGLIAEDRDPQGFLGSGITIDKAREAVWSIWEEANS-DSNSSKQQEESSTSYSKSTDMPF 175
Query: 172 SISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVS 231
SISTKRVFEAAVEYSR+ +IAPEHIA+GLFTVDDGSAGRVLKRLG ++N L A A++
Sbjct: 176 SISTKRVFEAAVEYSRTLDCQYIAPEHIAVGLFTVDDGSAGRVLKRLGANLNLLTAAALT 235
Query: 232 RLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRA-SALEQFCVDLTARASEELID 290
R++GE+AK+GRE L++ ++ S +G+ A S GRT+A S LEQFCVDLTARASE LID
Sbjct: 236 RIKGEMAKDGRE--LSQSSKDASTNGRIAGPGSAGRTKAKSVLEQFCVDLTARASEGLID 293
Query: 291 PVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350
PVIGRE E+QR+IQILCRRTKNNPILLGE+GVGKTAIAEGLAI I +A+ P FLL+KRIM
Sbjct: 294 PVIGREKEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAEAKAPGFLLTKRIM 353
Query: 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD 410
SLD+GLLMAGAKERGELE+RVT LISE++KSG VILFIDEVHTLIGSGTVGRGNKG+GLD
Sbjct: 354 SLDIGLLMAGAKERGELESRVTALISEVKKSGKVILFIDEVHTLIGSGTVGRGNKGSGLD 413
Query: 411 ISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLR 470
I+NLLKPSLGRGELQCIASTT DE R+QFEKDKALARRFQPVLI EPS+EDAV+ILLGLR
Sbjct: 414 IANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLIDEPSEEDAVKILLGLR 473
Query: 471 EKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQT 530
EKYEAHH+CK+T+EAI+AAV+LS+RYI+DR+LPDKAIDL+DEAGSRA IE F++KKE T
Sbjct: 474 EKYEAHHHCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRARIEAFRKKKEDAT 533
Query: 531 CILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA 590
CILSKPP+DYWQEI+TVQAMHEVV SR K DD A ++ E+ ESSLP ++D+EP
Sbjct: 534 CILSKPPNDYWQEIKTVQAMHEVVLSSRQKQDDGDAVADESGELAEESSLPPVAEDEEPI 593
Query: 591 VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRV 650
+VGPDDIAAVAS WSGIPVQQ+TADERMLL+GLEEQL+ RV+GQD+AV AISRAVKRSRV
Sbjct: 594 LVGPDDIAAVASAWSGIPVQQVTADERMLLMGLEEQLRSRVVGQDDAVVAISRAVKRSRV 653
Query: 651 GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
GLKDP+RP AAMLFCGPTGVGKTEL K+LAA YFGS
Sbjct: 654 GLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGS 689
>gi|255539981|ref|XP_002511055.1| ERD1 protein, chloroplast precursor, putative [Ricinus communis]
gi|223550170|gb|EEF51657.1| ERD1 protein, chloroplast precursor, putative [Ricinus communis]
Length = 946
Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/662 (73%), Positives = 551/662 (83%), Gaps = 24/662 (3%)
Query: 48 HKVQFFHSNYT--SNNNNC---------NPI------CARKRRK--IIPISSVFERFTER 88
H + FH N T S ++C NP+ C++ RRK I+PISSVFERFTER
Sbjct: 27 HPLLTFHCNNTVASAYSSCFGISISYRRNPLNSLSFKCSKSRRKRRILPISSVFERFTER 86
Query: 89 AVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHST 148
A+K VIFSQREA++LGKDMVFTQHLLLGLI EDR P+GFL SGI IDKARE V +IW S
Sbjct: 87 AIKVVIFSQREARALGKDMVFTQHLLLGLIGEDRDPDGFLGSGIKIDKAREIVQNIWSSD 146
Query: 149 NN--QDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTV 206
+ + + + SA +PF+ISTKRVFEAAVEYSR+ GYNFIAPEHIA+GL TV
Sbjct: 147 GDGTNASGSSTGKSGGGGSATDVPFAISTKRVFEAAVEYSRTMGYNFIAPEHIAIGLLTV 206
Query: 207 DDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSL-AKGVRENSISGKTAALKSP 265
DDGSA RVLKRLG +++ LA AV+RLQGELAKEGREPS+ AKG RE S K AL S
Sbjct: 207 DDGSASRVLKRLGANLDDLATAAVARLQGELAKEGREPSVEAKGAREKSFLKKAGALSSS 266
Query: 266 GRTRA-SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGK 324
+TR SAL QFCVDLTARASE LIDPVIGRETEI+RI+QILCRRTKNNPILLGESGVGK
Sbjct: 267 EQTREESALAQFCVDLTARASEGLIDPVIGRETEIERIVQILCRRTKNNPILLGESGVGK 326
Query: 325 TAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDV 384
TAIAEGLA RI Q +VP+FL++KR+MSLDMGLL+AGAKERGELEARVT LI EI K G++
Sbjct: 327 TAIAEGLATRIAQTDVPLFLIAKRVMSLDMGLLIAGAKERGELEARVTALIKEILKEGNI 386
Query: 385 ILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKA 444
ILFIDEVHT++G+GTVGRGNKG+GLDI+NLLKP LGRGELQCIASTT DE+R FE DKA
Sbjct: 387 ILFIDEVHTIVGTGTVGRGNKGSGLDIANLLKPPLGRGELQCIASTTIDEYRAHFEIDKA 446
Query: 445 LARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504
LARRFQPV I EPSQEDAV+ILLGLR+KYEAHHNC+FTLEAINAAV+LSARY++DRYLPD
Sbjct: 447 LARRFQPVTIDEPSQEDAVKILLGLRQKYEAHHNCRFTLEAINAAVYLSARYVADRYLPD 506
Query: 505 KAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDV 564
KAIDL+DEAGSRA IE K+KKEQQTCILSK PDDYWQEIRTVQAMHEVV SR+ +D
Sbjct: 507 KAIDLIDEAGSRARIESHKKKKEQQTCILSKSPDDYWQEIRTVQAMHEVVLASRMTHDGS 566
Query: 565 VASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLE 624
+S D+ EI+++S+ DDEP VVGPDDIAAVASLWSGIPVQQ+TADERM LVGL+
Sbjct: 567 ASSTDDSGEIILKST-EHVMLDDEPTVVGPDDIAAVASLWSGIPVQQLTADERMFLVGLD 625
Query: 625 EQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684
++L+KRVIGQDEAV+AIS AVKRSRVGLKDP+RP AAM+FCGPTGVGKTELAK+LAACYF
Sbjct: 626 DELRKRVIGQDEAVSAISCAVKRSRVGLKDPDRPIAAMMFCGPTGVGKTELAKALAACYF 685
Query: 685 GS 686
GS
Sbjct: 686 GS 687
>gi|18423233|ref|NP_568750.1| ERD1 protein [Arabidopsis thaliana]
gi|1169544|sp|P42762.1|CLPD_ARATH RecName: Full=Chaperone protein ClpD, chloroplastic; AltName:
Full=ATP-dependent Clp protease ATP-binding subunit ClpD
homolog; AltName: Full=Casein lytic proteinase D;
AltName: Full=ERD1 protein; AltName: Full=Protein EARLY
RESPONSIVE TO DEHYDRATION 1; AltName: Full=Protein
SENESCENCE ASSOCIATED GENE 15; Flags: Precursor
gi|497629|dbj|BAA04506.1| ERD1 protein [Arabidopsis thaliana]
gi|10177198|dbj|BAB10330.1| Erd1 protein precursor [Arabidopsis thaliana]
gi|14334878|gb|AAK59617.1| putative ATP-dependent Clp protease ATP-binding subunit ClpD, ERD1
protein precursor [Arabidopsis thaliana]
gi|22136916|gb|AAM91802.1| putative ATP-dependent Clp protease ATP-binding subunit ClpD, ERD1
protein precursor [Arabidopsis thaliana]
gi|332008646|gb|AED96029.1| ERD1 protein [Arabidopsis thaliana]
Length = 945
Score = 957 bits (2474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/648 (73%), Positives = 545/648 (84%), Gaps = 6/648 (0%)
Query: 40 FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQRE 99
+ IS+ + + F + T N RKR+K PIS+VFERFTERA++A+IFSQ+E
Sbjct: 42 YLGISLSNRTIHRFSTTPT----NLRRFPQRKRKKFTPISAVFERFTERAIRAIIFSQKE 97
Query: 100 AKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQ 159
AKSLGKDMV+TQHLLLGLIAEDR P GFL SGITIDKAREAV SIW N+ D+ A
Sbjct: 98 AKSLGKDMVYTQHLLLGLIAEDRDPQGFLGSGITIDKAREAVWSIWDEANS-DSKQEEAS 156
Query: 160 GKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLG 219
+S + MPFSISTKRVFEAAVEYSR+ +IAPEHIA+GLFTVDDGSAGRVLKRLG
Sbjct: 157 STSYSKSTDMPFSISTKRVFEAAVEYSRTMDCQYIAPEHIAVGLFTVDDGSAGRVLKRLG 216
Query: 220 VDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI-SGKTAALKSPGRTRASALEQFCV 278
++N L A A++RL+GE+AK+GREPS + S SG+ A G+ + LEQFCV
Sbjct: 217 ANMNLLTAAALTRLKGEIAKDGREPSSSSKGSFESPPSGRIAGSGPGGKKAKNVLEQFCV 276
Query: 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338
DLTARASE LIDPVIGRE E+QR+IQILCRRTKNNPILLGE+GVGKTAIAEGLAI I +A
Sbjct: 277 DLTARASEGLIDPVIGREKEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAEA 336
Query: 339 EVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSG 398
P FLL+KRIMSLD+GLLMAGAKERGELEARVT LISE++KSG VILFIDEVHTLIGSG
Sbjct: 337 SAPGFLLTKRIMSLDIGLLMAGAKERGELEARVTALISEVKKSGKVILFIDEVHTLIGSG 396
Query: 399 TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPS 458
TVGRGNKG+GLDI+NLLKPSLGRGELQCIASTT DE R+QFEKDKALARRFQPVLI+EPS
Sbjct: 397 TVGRGNKGSGLDIANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLINEPS 456
Query: 459 QEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518
+EDAV+ILLGLREKYEAHHNCK+T+EAI+AAV+LS+RYI+DR+LPDKAIDL+DEAGSRA
Sbjct: 457 EEDAVKILLGLREKYEAHHNCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRAR 516
Query: 519 IELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVES 578
IE F++KKE CILSKPP+DYWQEI+TVQAMHEVV SR K DD A ++ E+V ES
Sbjct: 517 IEAFRKKKEDAICILSKPPNDYWQEIKTVQAMHEVVLSSRQKQDDGDAISDESGELVEES 576
Query: 579 SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAV 638
SLP A+ DDEP +VGPDDIAAVAS+WSGIPVQQITADERMLL+ LE+QL+ RV+GQDEAV
Sbjct: 577 SLPPAAGDDEPILVGPDDIAAVASVWSGIPVQQITADERMLLMSLEDQLRGRVVGQDEAV 636
Query: 639 AAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
AAISRAVKRSRVGLKDP+RP AAMLFCGPTGVGKTEL K+LAA YFGS
Sbjct: 637 AAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGS 684
>gi|387169561|gb|AFJ66220.1| hypothetical protein 34G24.25 [Capsella rubella]
Length = 945
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/649 (73%), Positives = 541/649 (83%), Gaps = 7/649 (1%)
Query: 40 FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQRE 99
+ IS+ + + F ++ N RKR+K PIS+VFERFTERA++A+IFSQ+E
Sbjct: 41 YLGISLSNRTIHRF----STTPANFRRFPGRKRKKFTPISAVFERFTERAIRAIIFSQKE 96
Query: 100 AKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQ 159
AKSLGKDMV+TQHLLLGLIAEDR P GFL SGITIDKAREAV SIW N D+
Sbjct: 97 AKSLGKDMVYTQHLLLGLIAEDRDPQGFLGSGITIDKAREAVWSIWDEAN-PDSKQEEVS 155
Query: 160 GKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLG 219
+S + MPFSISTKRVFEAAVEYSR+ +IAPEHIA+GLFTVDDGSAGRVLKRLG
Sbjct: 156 STSYSKSTDMPFSISTKRVFEAAVEYSRNMDCQYIAPEHIAIGLFTVDDGSAGRVLKRLG 215
Query: 220 VDVNHLAAVAVSRLQGELAKEGREPSLA-KGVRENSISGKTAALKSPGRTRA-SALEQFC 277
++N L A A++RL+ E+AK+GREPS + KG + S + A + G+T+A + LEQFC
Sbjct: 216 ANMNLLTAAALTRLKSEMAKDGREPSSSSKGSFDASSNSGIAGSGAGGKTKAKNVLEQFC 275
Query: 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337
VDLTARASE LIDPVIGRE E+QR+IQILCRRTKNNPILLGE+GVGKTAIAEGLAI I +
Sbjct: 276 VDLTARASEGLIDPVIGREKEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAE 335
Query: 338 AEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS 397
A P FLL+KRIMSLD+GLLMAGAKERGELEARVT LISE++ SG VILFIDEVHTLIGS
Sbjct: 336 ANAPGFLLTKRIMSLDIGLLMAGAKERGELEARVTALISEVKNSGKVILFIDEVHTLIGS 395
Query: 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEP 457
GTVGRGNKG+GLDI+NLLKPSLGRGELQCIASTT DE R+QFEKDKALARRFQPVLI EP
Sbjct: 396 GTVGRGNKGSGLDIANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLIDEP 455
Query: 458 SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517
S+EDAV+ILLGL+EKYEAHHNCK+T EAI+AAV+LS+RYI+DR+LPDKAIDL+DEAGSRA
Sbjct: 456 SEEDAVKILLGLQEKYEAHHNCKYTAEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRA 515
Query: 518 HIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVE 577
IE F++KKE CILSKPPDDYWQEIRTVQAMHEVV SRLK D + ++ E+ E
Sbjct: 516 RIEAFRKKKEDAICILSKPPDDYWQEIRTVQAMHEVVLSSRLKQDGGDSIADESGELDEE 575
Query: 578 SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEA 637
SSLP + DDEP +VGPDDIAAVAS WSGIPVQQITADERMLL+ LEEQL+ RV+GQDEA
Sbjct: 576 SSLPPVAGDDEPILVGPDDIAAVASAWSGIPVQQITADERMLLMSLEEQLRNRVVGQDEA 635
Query: 638 VAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
VAAISRAVKRSRVGLKDP+RP AAMLFCGPTGVGKTEL K+LAA YFGS
Sbjct: 636 VAAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGS 684
>gi|359493969|ref|XP_002283802.2| PREDICTED: chaperone protein ClpD, chloroplastic-like [Vitis
vinifera]
gi|147770910|emb|CAN67541.1| hypothetical protein VITISV_012383 [Vitis vinifera]
gi|302142786|emb|CBI20081.3| unnamed protein product [Vitis vinifera]
Length = 946
Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/642 (73%), Positives = 543/642 (84%), Gaps = 12/642 (1%)
Query: 57 YTSNNNNCNPICARKR--------RKIIP-ISSVFERFTERAVKAVIFSQREAKSLGKDM 107
++S+ +C I +R RK P IS+VFERFTERA+KAVIFSQREAK+LG++M
Sbjct: 44 FSSSTCSCFGISISQRPHSHSFVFRKSSPRISAVFERFTERAIKAVIFSQREAKALGRNM 103
Query: 108 VFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGK-PFSSA 166
VFTQHLLLGL+AEDR +GFL SGITID AR+AV SIWH N+ + +S+
Sbjct: 104 VFTQHLLLGLVAEDRSLDGFLGSGITIDDARDAVRSIWHDYNDSSIISGIPSSQTSVASS 163
Query: 167 AKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLA 226
+PFSISTKRVFEAA+EYSR+ GYNFIAPEHIA+GLFTVDDGSAGRVLKRLG +VNHLA
Sbjct: 164 TDVPFSISTKRVFEAAIEYSRTMGYNFIAPEHIAIGLFTVDDGSAGRVLKRLGANVNHLA 223
Query: 227 AVAVSRLQGELAKEGREPSLA-KGVRENSISGKTAALKSPGRTRAS-ALEQFCVDLTARA 284
AVAVSRLQGELAK+G EPS KG++ S SGK A +KS G+ + AL QFCVDLTARA
Sbjct: 224 AVAVSRLQGELAKDGSEPSATFKGMQGKSFSGKAAIVKSSGKKKEKSALAQFCVDLTARA 283
Query: 285 SEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL 344
++ LIDPVIGR+ E+QR++QILCRRTKNNPILLGESGVGKTAIAEGLAI I +A+VP FL
Sbjct: 284 TDGLIDPVIGRDMEVQRVVQILCRRTKNNPILLGESGVGKTAIAEGLAISIAEADVPSFL 343
Query: 345 LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN 404
L+KRIMSLD+GLLMAG KERGELEARVTTLIS+I KSG++ILFIDEVH L+GSG GRGN
Sbjct: 344 LTKRIMSLDIGLLMAGTKERGELEARVTTLISDILKSGNIILFIDEVHMLVGSGIAGRGN 403
Query: 405 KGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVR 464
KG+GLDI++LLKPSLGRG+LQC ASTT DE+ FEKDKALARRFQPVLI+EPSQE+AVR
Sbjct: 404 KGSGLDIASLLKPSLGRGQLQCFASTTIDEYVKLFEKDKALARRFQPVLINEPSQEEAVR 463
Query: 465 ILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKR 524
ILLGLREKYEAHH C+FTLEAINAAVHLSARYI DR LPDKAIDL+DEAGS+A +E +KR
Sbjct: 464 ILLGLREKYEAHHKCRFTLEAINAAVHLSARYIPDRRLPDKAIDLIDEAGSKARMEAYKR 523
Query: 525 KKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSAS 584
KKE+QT +L K PDDYWQEIR V+AMHE+V S+LK + + M D S ++ ES LPS S
Sbjct: 524 KKEKQTSVLLKSPDDYWQEIRAVKAMHEMVMASKLKNCNGASCMEDGSTVLFESPLPSMS 583
Query: 585 DDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRA 644
DD+EP VVGP++IA VASLWSGIPVQQITADERMLLVGL EQL+KRV+GQD A+A+ISRA
Sbjct: 584 DDNEPIVVGPNEIAVVASLWSGIPVQQITADERMLLVGLHEQLRKRVVGQDNAIASISRA 643
Query: 645 VKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
VKRSRVGLKDPNRP AAMLFCGPTGVGKTELAK+LAACYFGS
Sbjct: 644 VKRSRVGLKDPNRPIAAMLFCGPTGVGKTELAKALAACYFGS 685
>gi|224134250|ref|XP_002321773.1| predicted protein [Populus trichocarpa]
gi|222868769|gb|EEF05900.1| predicted protein [Populus trichocarpa]
Length = 939
Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/647 (72%), Positives = 539/647 (83%), Gaps = 15/647 (2%)
Query: 41 FNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREA 100
F IS IS ++Q + + N+ K+R+I+ +S+VFERF ERA+KAVIFSQREA
Sbjct: 48 FGIS-ISQRLQSKKTLFLKRFNSS------KKRRILQVSAVFERFAERAIKAVIFSQREA 100
Query: 101 KSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQG 160
+LGKD VFTQHLLLGLI ED P GFL SGI ID+ARE V S W S ++ +
Sbjct: 101 IALGKDTVFTQHLLLGLIGEDCDPKGFLGSGIKIDEAREVVKSTWDSESDSVDASESVSK 160
Query: 161 KPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGV 220
+ S + +PFSI+TKRVFE AVEYSR+ G+NFIAPEHIA+GLFTV+DG+A RVLKR GV
Sbjct: 161 ESGVSPSNVPFSINTKRVFEVAVEYSRAMGHNFIAPEHIAIGLFTVEDGNADRVLKRFGV 220
Query: 221 DVNHLAAVAVSRLQGELAKEGREPSL-AKGVRENSISGKTAALKSPGRTRASALEQFCVD 279
D +HLAA+AV++LQGEL K+GREPS+ +KG RE S S K +T SAL QFCVD
Sbjct: 221 DGDHLAAIAVTKLQGELVKDGREPSVESKGKREKSFSKK-------AQTNKSALAQFCVD 273
Query: 280 LTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAE 339
LTA+ASE LIDPVIGR +EI+RI+QILCRR KNNPILLGESGVGKTAIAEGLA I QA+
Sbjct: 274 LTAQASEGLIDPVIGRHSEIERIVQILCRRAKNNPILLGESGVGKTAIAEGLATSIAQAD 333
Query: 340 VPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGT 399
VPVFLL KR+MSLD+GLL+AGAKERGELEARVTTLI EI K G++ILFIDEVHTL+GSGT
Sbjct: 334 VPVFLLEKRVMSLDVGLLIAGAKERGELEARVTTLIREILKEGNIILFIDEVHTLVGSGT 393
Query: 400 VGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQ 459
VG+GNKG+GLDI+NLLKPSLGRGE QCIASTT DE+RT FE DKALARRFQPVLI+EPSQ
Sbjct: 394 VGKGNKGSGLDIANLLKPSLGRGEFQCIASTTVDEYRTHFENDKALARRFQPVLINEPSQ 453
Query: 460 EDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI 519
EDAVRILLGL++KYEAHHNC+FTLEAINAAV+LSARYI+DRYLPDKAIDL+DEAGSRA I
Sbjct: 454 EDAVRILLGLQQKYEAHHNCRFTLEAINAAVNLSARYIADRYLPDKAIDLIDEAGSRARI 513
Query: 520 ELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESS 579
E ++RKKEQ++ ILSK PDDYWQEIRTVQAMHE+V SRL DD +SM T EI +ES
Sbjct: 514 EAYRRKKEQKSFILSKSPDDYWQEIRTVQAMHEMVLASRLTNDDSASSMDGTGEITLESR 573
Query: 580 LPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVA 639
LP A +DDEP VVG DDIAAVASLWSGIPVQQ+TA+ERM LV LEE+L+KRVIGQDEA+A
Sbjct: 574 LPPALNDDEPPVVGRDDIAAVASLWSGIPVQQLTAEERMFLVDLEEELRKRVIGQDEAIA 633
Query: 640 AISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
AISRAVKRSRVGLKDP+RP AAMLFCGPTGVGKTEL K+LA YFGS
Sbjct: 634 AISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALARSYFGS 680
>gi|14335170|gb|AAK59865.1| AT5g51070/K3K7_27 [Arabidopsis thaliana]
Length = 640
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/601 (72%), Positives = 501/601 (83%), Gaps = 6/601 (0%)
Query: 40 FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQRE 99
+ IS+ + + F + T N RKR+K PIS+VFERFTERA++A+IFSQ+E
Sbjct: 42 YLGISLSNRTIHRFSTTPT----NLRRFPQRKRKKFTPISAVFERFTERAIRAIIFSQKE 97
Query: 100 AKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQ 159
AKSLGKDMV+TQHLLLGLIAEDR P GFL SGITIDKAREAV SIW N+ D+ A
Sbjct: 98 AKSLGKDMVYTQHLLLGLIAEDRDPQGFLGSGITIDKAREAVWSIWDEANS-DSKQEEAS 156
Query: 160 GKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLG 219
+S + MPFSISTKRVFEAAVEYSR+ +IAPEHIA+GLFTVDDGSAGRVLKRLG
Sbjct: 157 STSYSKSTDMPFSISTKRVFEAAVEYSRTMDCQYIAPEHIAVGLFTVDDGSAGRVLKRLG 216
Query: 220 VDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI-SGKTAALKSPGRTRASALEQFCV 278
++N L A A++RL+GE+AK+GREPS + S SG+ A G+ + LEQFCV
Sbjct: 217 ANMNLLTAAALTRLKGEIAKDGREPSSSSKGSFESPPSGRIAGSGPGGKKAKNVLEQFCV 276
Query: 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338
DLTARASE LIDPVIGRE E+QR+IQILCRRTKNNPILLGE+GVGKTAIAEGLAI I +A
Sbjct: 277 DLTARASEGLIDPVIGREKEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAEA 336
Query: 339 EVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSG 398
P FLL+KRIMS+D+GLLMAGAKERGELEARVT LISE++KSG VILFIDEVHTLIGSG
Sbjct: 337 SAPGFLLTKRIMSMDIGLLMAGAKERGELEARVTALISEVKKSGKVILFIDEVHTLIGSG 396
Query: 399 TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPS 458
TVGRGNKG+GLDI+NLLKPSLGRGELQCIASTT DE R+QFEKDKALARRFQPVLI+EPS
Sbjct: 397 TVGRGNKGSGLDIANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLINEPS 456
Query: 459 QEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518
+EDAV+ILLGLREKYEAHHNCK+T+EAI+AAV+LS+RYI+DR+LPDKAIDL+DEAGSRA
Sbjct: 457 EEDAVKILLGLREKYEAHHNCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRAR 516
Query: 519 IELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVES 578
IE F++KKE CILSKPP+DYWQEI+TVQAMHEVV SR K DD A ++ E+V ES
Sbjct: 517 IEAFRKKKEDAICILSKPPNDYWQEIKTVQAMHEVVLSSRQKQDDGDAISDESGELVEES 576
Query: 579 SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAV 638
SLP A+ DDEP +VGPDDIAAVAS+WSGIPVQQITADERMLL+ LE+QL+ RV+GQDEAV
Sbjct: 577 SLPPAAGDDEPILVGPDDIAAVASVWSGIPVQQITADERMLLMSLEDQLRGRVVGQDEAV 636
Query: 639 A 639
+
Sbjct: 637 S 637
>gi|356507402|ref|XP_003522456.1| PREDICTED: chaperone protein ClpD, chloroplastic-like [Glycine max]
Length = 949
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/627 (66%), Positives = 511/627 (81%), Gaps = 13/627 (2%)
Query: 70 RKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFL 128
R+R + +S+VFERFTERA+KA++ SQREAK+LG ++V+TQHLLLGLIAE DR +GFL
Sbjct: 72 RRRASSLRVSAVFERFTERAIKAIVLSQREAKALGSELVYTQHLLLGLIAEEDRSSDGFL 131
Query: 129 ESGITIDKAREAVVSIWHSTN----NQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVE 184
SG+T++KARE V S+WH + A G SA ++PFS++ KRVFEAA E
Sbjct: 132 ASGVTVEKAREVVRSVWHRNSFARAGSGAARAGVDGDSKVSATQVPFSVNAKRVFEAAFE 191
Query: 185 YSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP 244
YS+S G+ F+ PEHI +GL VDDGS RVL RLG + + LA+VA SRLQ E+AK+GREP
Sbjct: 192 YSKSLGHKFVGPEHIIVGLVKVDDGSVSRVLYRLGTNGSQLASVAFSRLQKEIAKDGREP 251
Query: 245 S-LAKGVRENSIS----GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEI 299
+ L+KGV SIS A+ + G+ SAL QFCVDLTARASE IDPV+GRE E+
Sbjct: 252 NVLSKGVPNQSISRNGSDAGASATTGGKKMGSALSQFCVDLTARASEGRIDPVVGREVEV 311
Query: 300 QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA 359
QRIIQI+CR+TK+NPILLGE+GVGKTAIAEGLA+RI +A+V FLL+KR+MSLD+ LLMA
Sbjct: 312 QRIIQIICRKTKSNPILLGEAGVGKTAIAEGLALRIAKADVSPFLLTKRVMSLDIALLMA 371
Query: 360 GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419
GAKERGELE RVT LI +I KSGDVILFIDEVH L+ +GT+GRGNKG+GLDI+NLLKP+L
Sbjct: 372 GAKERGELEERVTKLIKDIIKSGDVILFIDEVHILVQAGTIGRGNKGSGLDIANLLKPAL 431
Query: 420 GRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNC 479
GRG+ QCIASTT DE+R FEKD ALARRFQPV + EPS++D ++IL GLREKYEAHH C
Sbjct: 432 GRGQFQCIASTTLDEYRLYFEKDTALARRFQPVWVDEPSEDDTIKILTGLREKYEAHHKC 491
Query: 480 KFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD 539
++T EAI AAV LSARYI DRYLPDKAIDL+DEAGSRA IE FK+KKE +T ILSK P D
Sbjct: 492 RYTAEAIKAAVDLSARYIVDRYLPDKAIDLIDEAGSRARIEAFKKKKEHETGILSKCPAD 551
Query: 540 YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAA 599
YWQEI+ V++MHE+ ++LKY +S+ DT+E++++S L SA+ ++EP VGP+DIAA
Sbjct: 552 YWQEIKDVKSMHEM--ENKLKYYG-ASSIDDTNELILDSYLSSATTNNEPIEVGPEDIAA 608
Query: 600 VASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPT 659
VASLWSGIPVQ++TAD+R+LL+ LE QL+KRVIGQ+EAVAAISRAVKRSRVGLKDP+RP
Sbjct: 609 VASLWSGIPVQKLTADQRILLLHLENQLRKRVIGQEEAVAAISRAVKRSRVGLKDPDRPI 668
Query: 660 AAMLFCGPTGVGKTELAKSLAACYFGS 686
AAMLFCGPTGVGKTELAKSLAACYFGS
Sbjct: 669 AAMLFCGPTGVGKTELAKSLAACYFGS 695
>gi|356516452|ref|XP_003526908.1| PREDICTED: chaperone protein ClpD, chloroplastic-like [Glycine max]
Length = 950
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/670 (63%), Positives = 529/670 (78%), Gaps = 27/670 (4%)
Query: 29 PPLQYVNPMSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTER 88
PPL + P SS ++S + F ++ + N ++RR + +S+VFERFTER
Sbjct: 42 PPL-FTRPYSSLS--FLVSQRKGFTLTSLSPIRTN-----KKRRRASLRVSAVFERFTER 93
Query: 89 AVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLESGITIDKAREAVVSIW-- 145
A+KA++ SQREAK+LG ++V+TQHLLLGLIAE DR +GFL SG+T++KARE V S+W
Sbjct: 94 AIKAIVLSQREAKALGSELVYTQHLLLGLIAEEDRSSDGFLASGVTVEKAREVVRSVWLR 153
Query: 146 -------HSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
DD ++ +SA ++PFS++ KRVFEAA EYS+S G+ F+ PEH
Sbjct: 154 NGSARAGSGAARAGVDDDGSK----ASATQVPFSVNAKRVFEAAFEYSKSLGHKFVGPEH 209
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS-LAKGVRENSISG 257
I +GL VDDGS RVL RLG + + LA+VA SRLQ E+AK+GREP+ ++KGV SIS
Sbjct: 210 ITVGLVKVDDGSVSRVLYRLGTNGSQLASVAFSRLQKEIAKDGREPNVISKGVPNKSISR 269
Query: 258 KTAALKSPGRT-RASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
K + + T SAL QFCVDLTARASE IDPV+GRE E+QRIIQILCR+TK+NPIL
Sbjct: 270 KGSDAGASATTGEESALSQFCVDLTARASEGRIDPVVGREVEVQRIIQILCRKTKSNPIL 329
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
LGE+GVGKTAIAEG+A+RI +A+V FLL+KR+MSLD+ LLMAGAKERGELE RVT L+
Sbjct: 330 LGEAGVGKTAIAEGMALRIAKADVAPFLLTKRVMSLDIALLMAGAKERGELEERVTKLVK 389
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
+I KSGDVILFIDEVH L+ +GT+GRGNKG+GLDI+NLLKP+LGRG+ QCIASTT DE+R
Sbjct: 390 DIIKSGDVILFIDEVHILVQAGTIGRGNKGSGLDIANLLKPALGRGQFQCIASTTLDEYR 449
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
FEKD ALARRFQPV + EPS++DA++IL+GLREKYEAHH C++T EAI AAV LSARY
Sbjct: 450 LYFEKDTALARRFQPVWVDEPSEDDAIKILMGLREKYEAHHKCRYTAEAIKAAVDLSARY 509
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQG 556
I DRYLPDKAIDL+DEAGSRA IE FK+KKE +T ILSK P DYWQEI+ V++MHE+
Sbjct: 510 IVDRYLPDKAIDLIDEAGSRACIEAFKKKKEHETGILSKCPADYWQEIKDVKSMHEM--E 567
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
++LKY +S+ DT+E++++S L S + D+EP VGP+DIAAVASLWSGIPVQ++TAD+
Sbjct: 568 NKLKYYG-ASSIDDTNELILDSYLSSTTTDNEPIEVGPEDIAAVASLWSGIPVQKLTADQ 626
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
R+LL+ LE QL+KRVIGQ+EAVAAISRAVKRSRVGLKDP+RP AAMLFCGPTGVGKTELA
Sbjct: 627 RILLLDLENQLRKRVIGQEEAVAAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELA 686
Query: 677 KSLAACYFGS 686
KSLAACYFGS
Sbjct: 687 KSLAACYFGS 696
>gi|449444174|ref|XP_004139850.1| PREDICTED: chaperone protein ClpD, chloroplastic-like [Cucumis
sativus]
Length = 949
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/648 (65%), Positives = 516/648 (79%), Gaps = 23/648 (3%)
Query: 47 SHKVQFFHSNY-TSNNNNCNPICARKRRKI-IPI-SSVFERFTERAVKAVIFSQREAKSL 103
S+ V F S++ TS N + +KRR++ IPI S++FERFTERA+KAVIFSQREAK+L
Sbjct: 62 SNLVSLFSSSFITSRNCFISGRIQQKRRRLRIPIISAIFERFTERAIKAVIFSQREAKAL 121
Query: 104 GKDMVFTQHLLLGLIAEDRH---PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQG 160
KD+VFTQHLLLGLIAE+ H P GFL+SG+T+ ARE V IWH NN D + G
Sbjct: 122 SKDLVFTQHLLLGLIAEEEHNQSPGGFLDSGLTLHVARETVRGIWH--NNDAEADTSLHG 179
Query: 161 KPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLF-TVDDGSAGRVLKRLG 219
+ A +PFSISTKRVF++AVEYS+ G++FI PEH+++ L T DDGS +L+ LG
Sbjct: 180 AAVT--AHVPFSISTKRVFDSAVEYSKQMGHHFIGPEHLSIALLATDDDGSIQLILRSLG 237
Query: 220 VDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVD 279
V+V L A+SRL+GELAK+GREPS A + KS + SAL +FCVD
Sbjct: 238 VNVTQLVDAAISRLKGELAKDGREPSSAL---------QWVPKKSTSKKENSALARFCVD 288
Query: 280 LTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAE 339
LTARASE IDP+ GR++E++R+++ILCRRTKNNPIL+GESGVGKTAIAEGLA+ I QA+
Sbjct: 289 LTARASEGFIDPIFGRDSEVERVVEILCRRTKNNPILIGESGVGKTAIAEGLALSIAQAD 348
Query: 340 VPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGT 399
P LL+K++MSLD+GLLM+GAKERGELEARVT+LI+EI +SG++ILFIDEVH+L G
Sbjct: 349 APFVLLNKQVMSLDIGLLMSGAKERGELEARVTSLINEITESGNIILFIDEVHSLAELGA 408
Query: 400 VGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQ 459
G G+KG+GL+ +N+LKPSLGRGELQCIASTT E+ QFEKDKALARRFQPVLI EPSQ
Sbjct: 409 SGGGSKGSGLNFANMLKPSLGRGELQCIASTTIGEYTKQFEKDKALARRFQPVLIEEPSQ 468
Query: 460 EDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI 519
E+AVR+LL +REKYEAHHNC+FTLEAINAAV+LSARYISDRYLPDKAIDL+DEAGSRA +
Sbjct: 469 ENAVRMLLSIREKYEAHHNCRFTLEAINAAVYLSARYISDRYLPDKAIDLIDEAGSRARM 528
Query: 520 ELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTS-EIVVES 578
E +K++KE QT ILSK PDDYWQEI+ +QAMH++ ++L +V +S DTS +ES
Sbjct: 529 EAYKKRKELQTSILSKSPDDYWQEIKAIQAMHDMNLANKLNDGEVQSS--DTSGNNALES 586
Query: 579 SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAV 638
+ S SD+ EP VVGPDDIAAV SLWSGIPVQQ+T DE +LL+GL+EQLKKRV+GQDEAV
Sbjct: 587 TFSSISDNYEPVVVGPDDIAAVTSLWSGIPVQQLTIDESILLMGLDEQLKKRVVGQDEAV 646
Query: 639 AAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
+AISRAVKRSRVGLKDPNRP A +LFCGPTGVGKTEL K LA CYFGS
Sbjct: 647 SAISRAVKRSRVGLKDPNRPIAVLLFCGPTGVGKTELTKVLARCYFGS 694
>gi|449482749|ref|XP_004156392.1| PREDICTED: LOW QUALITY PROTEIN: chaperone protein ClpD,
chloroplastic-like [Cucumis sativus]
Length = 1018
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/632 (66%), Positives = 505/632 (79%), Gaps = 22/632 (3%)
Query: 63 NC--NPICARKRRKI-IPI-SSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLI 118
NC N +KRR++ IPI S++FERFTERA+KAVIFSQREAK+L KD+VFTQHLLLGLI
Sbjct: 146 NCFINGRIQQKRRRLRIPIISAIFERFTERAIKAVIFSQREAKALSKDLVFTQHLLLGLI 205
Query: 119 AEDRH---PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSIST 175
AE+ H P GFL+SG+T+ AREAV IWH NN D + G + A +PFSIST
Sbjct: 206 AEEEHNQSPGGFLDSGLTLHVAREAVRGIWH--NNDAEADTSLHGAAVT--AHVPFSIST 261
Query: 176 KRVFEAAVEYSRSRGYNFIAPEHIALGLF-TVDDGSAGRVLKRLGVDVNHLAAVAVSRLQ 234
KRVF++AVEYS+ G++FI PEH+++ L T DDGS +L+ LGV+V L A+SRL+
Sbjct: 262 KRVFDSAVEYSKQMGHHFIGPEHLSIALLATDDDGSIQLILRSLGVNVTQLVDAAISRLK 321
Query: 235 GELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIG 294
GELAK+GREPS A + KS + SAL +FCVDLTARASE IDP+ G
Sbjct: 322 GELAKDGREPSSAL---------QWVPKKSTSKKENSALARFCVDLTARASEGFIDPIFG 372
Query: 295 RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354
R++E++R+++ILCRR KNNPIL+GESGVGKTAIAEGLA+ I QA+ P LL+K++MSLD+
Sbjct: 373 RDSEVERVVEILCRRXKNNPILIGESGVGKTAIAEGLALSIAQADAPFVLLNKQVMSLDI 432
Query: 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414
GLLM+GAKERGELEARVT+LI+EI +SG++ILFIDEVH+L G G G+KG+GL+ +N+
Sbjct: 433 GLLMSGAKERGELEARVTSLINEITESGNIILFIDEVHSLAELGASGGGSKGSGLNFANM 492
Query: 415 LKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE 474
LKPSLGRGELQCIASTT E+ QFEKDKALARRFQPVLI EPSQE+AVR+LL +REKYE
Sbjct: 493 LKPSLGRGELQCIASTTIGEYTKQFEKDKALARRFQPVLIEEPSQENAVRMLLSIREKYE 552
Query: 475 AHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILS 534
AHHNC+FTLEAINAAV+LSARYISDRYLPDKAIDL+DEAGSRA +E +K++KE QT ILS
Sbjct: 553 AHHNCRFTLEAINAAVYLSARYISDRYLPDKAIDLIDEAGSRARMEAYKKRKELQTSILS 612
Query: 535 KPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP 594
K PDDYWQEI+ +QAMH++ ++L D V S + +ES+ S SD+ EP VVGP
Sbjct: 613 KSPDDYWQEIKAIQAMHDMNLANKLN-DGEVQSSDTSGNNALESTFSSISDNYEPVVVGP 671
Query: 595 DDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKD 654
DDIAAV SLWSGIPVQQ+T DE +LL+GL+EQLKKRV+GQDEAV+AISRAVKRSRVGLKD
Sbjct: 672 DDIAAVTSLWSGIPVQQLTIDESILLMGLDEQLKKRVVGQDEAVSAISRAVKRSRVGLKD 731
Query: 655 PNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
PNRP A +LFCGPTGVGKTEL K LA CYFGS
Sbjct: 732 PNRPIAVLLFCGPTGVGKTELTKVLARCYFGS 763
>gi|293336359|ref|NP_001169550.1| uncharacterized protein LOC100383428 [Zea mays]
gi|224030061|gb|ACN34106.1| unknown [Zea mays]
gi|414587415|tpg|DAA37986.1| TPA: hypothetical protein ZEAMMB73_897347 [Zea mays]
Length = 932
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/634 (65%), Positives = 495/634 (78%), Gaps = 33/634 (5%)
Query: 71 KRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES 130
+RR I +VFERFTERAVKAV+FSQREA+ +G D V HLLLGLIAEDR GFL S
Sbjct: 55 RRRGPGVIRAVFERFTERAVKAVVFSQREARGMGDDTVAPHHLLLGLIAEDRTLVGFLGS 114
Query: 131 GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKM----PFSISTKRVFEAAVEYS 186
G+ +++AREA DA + P +A + PFS ++KRVFEAAVE+S
Sbjct: 115 GLRVERAREAC------------RDALGKAGPAQAATGLATDVPFSAASKRVFEAAVEFS 162
Query: 187 RSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP-S 245
R+ G NFI+PEHIALGLF +DD + R+LK LG D + LA A+ R+QGELAK+GREP
Sbjct: 163 RNIGCNFISPEHIALGLFDLDDPTTNRILKSLGADPSQLAKQALKRVQGELAKDGREPVG 222
Query: 246 LAK-GVRENSISG--KTAALK-SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQR 301
L+ VRE S +G K+A +K S + SAL QFCVDLT RAS LIDPVIGR+ EI+R
Sbjct: 223 LSSFKVRERSAAGAGKSAIVKYSNKKKEKSALAQFCVDLTMRASGGLIDPVIGRKEEIER 282
Query: 302 IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361
++QI+CRRTKNNPILLGE+GVGKTAIAEGLA++I +VP+FL+ KRI+SLD+ LLMAGA
Sbjct: 283 VVQIICRRTKNNPILLGEAGVGKTAIAEGLALKIANGDVPIFLVGKRILSLDVALLMAGA 342
Query: 362 KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421
KERGELEAR+T+L+ E++K+GDV+LFIDEVHTLIGSG GRG+KG GLDI+NLLKP+L R
Sbjct: 343 KERGELEARITSLLREVRKAGDVMLFIDEVHTLIGSGIAGRGSKGAGLDIANLLKPALSR 402
Query: 422 GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKF 481
GELQCIASTT DEHR FEKDKALARRFQPVL++EPSQEDAV+ILLGLREKYE +H CK+
Sbjct: 403 GELQCIASTTLDEHRLHFEKDKALARRFQPVLVNEPSQEDAVKILLGLREKYETYHKCKY 462
Query: 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYW 541
TLE INAAV+LSARYI DR+LPDKAIDL+DEAGSRA +E FKRKKE+Q ILSK PD+YW
Sbjct: 463 TLEGINAAVYLSARYIPDRHLPDKAIDLIDEAGSRARMESFKRKKEEQCSILSKSPDEYW 522
Query: 542 QEIRTVQAMHEVVQGSRLKY-------DDVV--ASMGDTSEIVVESSLPSASDDDEPAVV 592
QEIR VQ+ HEV +RLKY DD V +GD + S+P S DEP +V
Sbjct: 523 QEIRAVQSTHEVALANRLKYSLDENDKDDGVNIEVIGDNK--IASPSMPPTS-VDEPILV 579
Query: 593 GPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGL 652
G ++IA V SLWSGIPVQ++TADE LLVGL+++L+KRVIGQD+AV AISRAVKRSRVGL
Sbjct: 580 GSEEIARVTSLWSGIPVQKLTADETKLLVGLDDELRKRVIGQDDAVVAISRAVKRSRVGL 639
Query: 653 KDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
DP+RP A +LFCGPTGVGKTEL K+LAA YFGS
Sbjct: 640 NDPDRPIATLLFCGPTGVGKTELTKALAASYFGS 673
>gi|357163239|ref|XP_003579667.1| PREDICTED: chaperone protein ClpD2, chloroplastic-like
[Brachypodium distachyon]
Length = 942
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/622 (65%), Positives = 492/622 (79%), Gaps = 19/622 (3%)
Query: 76 IPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID 135
+ + +VFERFTERAVKAV+ SQREA+ +G + V HLLLGL+AEDR GFL SG+ I+
Sbjct: 70 VVVRAVFERFTERAVKAVVLSQREARGMGDEAVAPHHLLLGLVAEDRSAAGFLASGVRIE 129
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
+AREA + + AA G A +PFS ++KRVF AAVE+SR+ G NFI+
Sbjct: 130 RAREA----GRAAVGKAGPAQAATGL----ATDVPFSGASKRVFVAAVEFSRNMGCNFIS 181
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP-SLAK-GVREN 253
PEHIALGLF +DD + VLK LG+D LA A++R+QGELAK+GREP L+ VRE
Sbjct: 182 PEHIALGLFDLDDPTTNSVLKSLGLDPRQLAKQALTRVQGELAKDGREPLGLSSFKVREK 241
Query: 254 SI--SGKTAALK-SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT 310
S SG++ ++ S + SAL QFCVDLT RAS LIDPVIGRE EIQR++QI+CRRT
Sbjct: 242 STAGSGRSPIVRYSNKKKEKSALAQFCVDLTMRASGGLIDPVIGREKEIQRVVQIICRRT 301
Query: 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370
KNNPILLGE+GVGKTAIAEGLAI+I +VP+FL++KR++SLD+ LLMAGA+ERGELEAR
Sbjct: 302 KNNPILLGEAGVGKTAIAEGLAIKIANGDVPIFLVAKRVLSLDVALLMAGARERGELEAR 361
Query: 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430
VT+LI E++K+GDVILFIDEVHTLIGSG GRGNKG+GLDI+NLLKP+L RGELQCIAST
Sbjct: 362 VTSLIREVRKAGDVILFIDEVHTLIGSGVAGRGNKGSGLDIANLLKPALARGELQCIAST 421
Query: 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490
T DEHR FEKDKALARRFQPV ++EPSQEDAV+ILLGLREKYE +H CK+TLE INAAV
Sbjct: 422 TLDEHRLHFEKDKALARRFQPVYVNEPSQEDAVKILLGLREKYETYHKCKYTLEGINAAV 481
Query: 491 HLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM 550
+LSARYI DR+LPDKAIDL+DEAGSRA +E FK+KKE+Q I+SK PD+YWQEIR VQAM
Sbjct: 482 YLSARYIPDRHLPDKAIDLIDEAGSRARMESFKKKKEEQCSIISKSPDEYWQEIRAVQAM 541
Query: 551 HEVVQGSRLKY--DDVVASMGDTSEIVVESSLPSAS----DDDEPAVVGPDDIAAVASLW 604
HEV +RLKY ++ G E++ + + AS DE ++VG ++IA V SLW
Sbjct: 542 HEVALTNRLKYSLNENDQENGVDVEVLSDGKIMPASKLAASADELSMVGSEEIARVTSLW 601
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
SGIPVQQ+TADER LLVGL+++L+KRVIGQD+AV AISRAVKRSRVG+ DPNRP A +LF
Sbjct: 602 SGIPVQQLTADERKLLVGLDDELRKRVIGQDDAVVAISRAVKRSRVGMSDPNRPIATLLF 661
Query: 665 CGPTGVGKTELAKSLAACYFGS 686
CGPTGVGKTEL K+LAA YFGS
Sbjct: 662 CGPTGVGKTELTKALAAIYFGS 683
>gi|357464877|ref|XP_003602720.1| ATP-dependent Clp protease ATP-binding subunit [Medicago
truncatula]
gi|355491768|gb|AES72971.1| ATP-dependent Clp protease ATP-binding subunit [Medicago
truncatula]
Length = 963
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/618 (65%), Positives = 492/618 (79%), Gaps = 19/618 (3%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE----DRHPNGFLESGI-TID 135
+FERFTER++K+++++++EAK D ++ QH++LGLIAE +R NGFL+SG+ T++
Sbjct: 100 IFERFTERSIKSIVYAEKEAKFFKSDFLYAQHIMLGLIAEAEESNRSQNGFLDSGVVTLE 159
Query: 136 KAREAVVSIWHSTNNQDTDDAAA-QGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
KAR+AV + STN D + Q +P +PFS TKRVFEAAVEYSRS +NF+
Sbjct: 160 KARDAVPHLNDSTNYVDDNGVYVYQDRP------VPFSFGTKRVFEAAVEYSRSLNHNFV 213
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS-LAKGVREN 253
PEHI + L VDDGS+ R+L RLG + + LAA A SRLQ ELA++GREP ++ G
Sbjct: 214 DPEHIFVALMKVDDGSSVRILYRLGSNPDQLAAAAYSRLQKELARDGREPGYVSNGGHNK 273
Query: 254 SISGK-----TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR 308
SI + +AA + + +AL QFCVDLTARAS LIDPVIGRE E+QRIIQILCR
Sbjct: 274 SIPQRRSGAGSAAKTKDKKDKKNALSQFCVDLTARASVGLIDPVIGREVEVQRIIQILCR 333
Query: 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368
+TK+NPILLGE+GVGKTAIAEGLAI I +AEV FLL+KR+MSLD+GLLMAGAKERGELE
Sbjct: 334 KTKSNPILLGEAGVGKTAIAEGLAILISRAEVAPFLLTKRVMSLDVGLLMAGAKERGELE 393
Query: 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA 428
RVT LI +I +SGDVILFIDEVHTL+ SGT GRGNKG+G DI+NLLKPSLGRG+ QCIA
Sbjct: 394 DRVTKLIKDIIESGDVILFIDEVHTLVQSGTTGRGNKGSGFDIANLLKPSLGRGQFQCIA 453
Query: 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINA 488
STT DE+R FEKDKALARRFQPV I EPS++DA++IL+GLREKYEAHH C++T +AI A
Sbjct: 454 STTIDEYRLHFEKDKALARRFQPVWIDEPSEDDAIKILMGLREKYEAHHKCRYTEDAIKA 513
Query: 489 AVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQ 548
AVHLSARYI DRYLPDKAIDL+DEAGS+A IE FK KKE CILSK PDDYW+EIRTVQ
Sbjct: 514 AVHLSARYIVDRYLPDKAIDLIDEAGSKASIESFKMKKEHDYCILSKSPDDYWREIRTVQ 573
Query: 549 AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ ++VQ S LKY + + DTSE++++S L SA+ D+E V PD IAAVASLWSGIP
Sbjct: 574 STLKMVQESMLKYYG-ASGIEDTSELILDSYLTSAAFDNECIEVRPDHIAAVASLWSGIP 632
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
VQQ+TADER LL+ L+ +L++RVIGQ+EAV+AISR+VKRSRVGL+DP RP A +LFCGPT
Sbjct: 633 VQQLTADERSLLLDLDNKLRERVIGQEEAVSAISRSVKRSRVGLQDPGRPIATLLFCGPT 692
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAKSLAACYFGS
Sbjct: 693 GVGKTELAKSLAACYFGS 710
>gi|242072916|ref|XP_002446394.1| hypothetical protein SORBIDRAFT_06g015220 [Sorghum bicolor]
gi|241937577|gb|EES10722.1| hypothetical protein SORBIDRAFT_06g015220 [Sorghum bicolor]
Length = 939
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/622 (65%), Positives = 491/622 (78%), Gaps = 27/622 (4%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKARE 139
+VFERFTERAVKAV+FSQREA+ +G + V HLLLGL+AEDR GFL SG+ +D+ARE
Sbjct: 71 AVFERFTERAVKAVVFSQREARGMGDETVAPHHLLLGLVAEDRTLVGFLGSGLRVDRARE 130
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKM----PFSISTKRVFEAAVEYSRSRGYNFIA 195
A DA + P +A M PFS ++KRVFEAAVE+SR+ G NFI+
Sbjct: 131 AC------------RDALGKPGPAQAATGMATDVPFSSASKRVFEAAVEFSRNMGCNFIS 178
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP-SLAK-GVREN 253
PEHIALGLF +DD + R+LK LG D + LA A++R+QGELAK+GREP L+ VRE
Sbjct: 179 PEHIALGLFDLDDPTTNRILKSLGADPSQLAKQALNRVQGELAKDGREPVGLSSFKVREK 238
Query: 254 SISG--KTAALK-SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT 310
S +G K+A +K S + SAL QFCVDLT RAS LIDPVIGR+ EI R++QI+CRRT
Sbjct: 239 SAAGAGKSAIVKYSNKKKEKSALAQFCVDLTMRASGGLIDPVIGRKEEIGRVVQIICRRT 298
Query: 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370
KNNPILLGE+GVGKTAIAEGLA++I +VP+FL+ KRI+SLD+ LLMAGAKERGELEAR
Sbjct: 299 KNNPILLGEAGVGKTAIAEGLALKIADGDVPIFLVGKRILSLDVALLMAGAKERGELEAR 358
Query: 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430
+T+L+ E++K+GDV+LFIDEVHTLIGSG GRG+KG GLDI+NLLKP+L RGELQCIAST
Sbjct: 359 ITSLLREVRKAGDVMLFIDEVHTLIGSGIAGRGSKGAGLDIANLLKPALARGELQCIAST 418
Query: 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490
T DEHR FEKDKALARRFQPV ++EPSQEDAV+ILLGLREKYEA+H CK+TLE INAAV
Sbjct: 419 TLDEHRLHFEKDKALARRFQPVFVNEPSQEDAVKILLGLREKYEAYHKCKYTLEGINAAV 478
Query: 491 HLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM 550
+LSARYI DR+LPDKAIDL+DEAGSRA +E FKRKKE+Q ILSK PD YWQEIR VQ+M
Sbjct: 479 YLSARYIPDRHLPDKAIDLIDEAGSRARMESFKRKKEEQCSILSKSPDQYWQEIRAVQSM 538
Query: 551 HEVVQGSRLKY--DDVVASMGDTSEIVVESSLPSAS----DDDEPAVVGPDDIAAVASLW 604
HEV +RLKY D+ G + E++ E+ + S S DEP +V ++IA V SLW
Sbjct: 539 HEVALTNRLKYSLDENEKEDGVSIEVIGENKIASPSMPPTSVDEPILVDSEEIARVTSLW 598
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
SGIPVQ++TAD+ +LVGL+++L+KRVIGQD+AV AISRAVKRSRVGL DP+RP A +LF
Sbjct: 599 SGIPVQKLTADDTKILVGLDDELRKRVIGQDDAVVAISRAVKRSRVGLNDPDRPIATLLF 658
Query: 665 CGPTGVGKTELAKSLAACYFGS 686
CGPTGVGKTEL K+LAA YFGS
Sbjct: 659 CGPTGVGKTELTKALAASYFGS 680
>gi|347602485|sp|Q7XL03.2|CLPD2_ORYSJ RecName: Full=Chaperone protein ClpD2, chloroplastic; AltName:
Full=ATP-dependent Clp protease ATP-binding subunit ClpD
homolog 2; AltName: Full=Casein lytic proteinase D2;
Flags: Precursor
Length = 937
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/628 (64%), Positives = 491/628 (78%), Gaps = 31/628 (4%)
Query: 76 IPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID 135
+ + +VFERFTERAVKAV+FSQREA+ +G + V HLLLGL+AEDR P GFL SG+ ++
Sbjct: 65 VVVRAVFERFTERAVKAVVFSQREARGMGDETVAPHHLLLGLVAEDRSPLGFLASGVRVE 124
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGK------PFSSAAKMPFSISTKRVFEAAVEYSRSR 189
+AREA AA GK P A +PFS ++KRVFEAAVE+SR+
Sbjct: 125 RAREAC--------------RAAVGKEGLAQAPVGLATDVPFSGASKRVFEAAVEFSRNM 170
Query: 190 GYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP-SLAK 248
G NFI+PEHIALGLF ++D + VLK LGVD + LA A++R+QGELAK+GREP L+
Sbjct: 171 GCNFISPEHIALGLFNLNDPTTNNVLKSLGVDSSQLAKQALTRVQGELAKDGREPVGLSS 230
Query: 249 -GVRENSI--SGKTAALKSPGRTR-ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQ 304
VRE GK+A +K + + SAL FC+DLT RAS LIDPVIGR+ EI+R++Q
Sbjct: 231 FKVREKFTPGGGKSAIVKYSNKNKEKSALALFCLDLTMRASGGLIDPVIGRKDEIERVVQ 290
Query: 305 ILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER 364
I+CRRTKNNPILLGE+GVGKTAIAEGLA +I +VP+FL+ KRI+SLD+ LLMAGAKER
Sbjct: 291 IICRRTKNNPILLGEAGVGKTAIAEGLAHKIANGDVPIFLVGKRILSLDVALLMAGAKER 350
Query: 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL 424
GELEARVT+LI E++K+GDVILFIDEVHTLIGSG GRG+KG GLDI+NLLKP+L RGEL
Sbjct: 351 GELEARVTSLIREVRKAGDVILFIDEVHTLIGSGIAGRGSKGAGLDIANLLKPALARGEL 410
Query: 425 QCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE 484
QCIASTT DEHR F+KDKALARRFQPVL++EPSQEDAV+ILLGLREKYE +H CK+TLE
Sbjct: 411 QCIASTTLDEHRLHFDKDKALARRFQPVLVNEPSQEDAVKILLGLREKYETYHKCKYTLE 470
Query: 485 AINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEI 544
+INAAV+LSARYI+DR+LPDKAIDL+DEAGSRA +E FKRKKE+Q ILSK PD+YWQEI
Sbjct: 471 SINAAVYLSARYIADRHLPDKAIDLIDEAGSRARMESFKRKKEEQCSILSKSPDEYWQEI 530
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTS--EIVVESSLPSAS----DDDEPAVVGPDDIA 598
R VQ MHEV +++KY D E+V E AS D+P++VG ++IA
Sbjct: 531 RAVQNMHEVALTNKVKYSLNQNDQEDAVDIELVGEDKTSPASMLSTSTDKPSLVGSEEIA 590
Query: 599 AVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRP 658
V SLWSGIPVQQ+TADER LLVGL+++L+KRVIGQD+AV AIS+AVKRSRVGL DP+RP
Sbjct: 591 RVTSLWSGIPVQQLTADERKLLVGLDDELRKRVIGQDDAVLAISKAVKRSRVGLNDPDRP 650
Query: 659 TAAMLFCGPTGVGKTELAKSLAACYFGS 686
A ++FCGPTGVGKTEL K+LAA YFGS
Sbjct: 651 IATLIFCGPTGVGKTELTKALAASYFGS 678
>gi|116309455|emb|CAH66527.1| H0502B11.7 [Oryza sativa Indica Group]
Length = 937
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/628 (64%), Positives = 491/628 (78%), Gaps = 31/628 (4%)
Query: 76 IPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID 135
+ + +VFERFTERAVKAV+FSQREA+ +G + V HLLLGL+AEDR P GFL SG+ ++
Sbjct: 65 VVVRAVFERFTERAVKAVVFSQREARGMGDETVAPHHLLLGLVAEDRSPLGFLASGVRVE 124
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGK------PFSSAAKMPFSISTKRVFEAAVEYSRSR 189
+AREA AA GK P A +PFS ++KRVFEAAVE+SR+
Sbjct: 125 RAREAC--------------RAAVGKEGLAQAPVGLATDVPFSGASKRVFEAAVEFSRNM 170
Query: 190 GYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP-SLAK 248
G NFI+PEHIALGLF ++D + VLK LGVD + LA A++R+QGELAK+GREP L+
Sbjct: 171 GCNFISPEHIALGLFNLNDPTTNNVLKSLGVDSSQLAKQALTRVQGELAKDGREPVGLSS 230
Query: 249 -GVRENSI--SGKTAALK-SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQ 304
VRE GK+A +K S + SAL FC+DLT RAS LIDPVIGR+ EI+R++Q
Sbjct: 231 FKVREKFTPGGGKSAIVKYSNKKKEKSALALFCLDLTMRASGGLIDPVIGRKDEIERVVQ 290
Query: 305 ILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER 364
I+CRRTKNNPILLGE+GVGKTAIAEGLA +I +VP+FL+ KRI+SLD+ LLMAGAKER
Sbjct: 291 IICRRTKNNPILLGEAGVGKTAIAEGLAHKIANGDVPIFLVGKRILSLDVALLMAGAKER 350
Query: 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL 424
GELEARVT+LI E++K+GDVILFIDEVHTLIGSG GRG+KG GLDI+NLLKP+L RGEL
Sbjct: 351 GELEARVTSLIREVRKAGDVILFIDEVHTLIGSGIAGRGSKGAGLDIANLLKPALARGEL 410
Query: 425 QCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE 484
QCIASTT DEHR F+KDKALARRFQPVL++EPSQEDAV+ILLGLREKYE +H CK+TLE
Sbjct: 411 QCIASTTLDEHRLHFDKDKALARRFQPVLVNEPSQEDAVKILLGLREKYETYHKCKYTLE 470
Query: 485 AINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEI 544
+INAAV+LSARYI+DR+LPDKAIDL+DEAGSRA +E FKRKKE+Q ILSK PD+YWQEI
Sbjct: 471 SINAAVYLSARYIADRHLPDKAIDLIDEAGSRARMESFKRKKEEQCSILSKSPDEYWQEI 530
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTS--EIVVESSLPSAS----DDDEPAVVGPDDIA 598
R VQ MHEV +++KY D E+V E AS D+P++VG ++IA
Sbjct: 531 RAVQNMHEVALTNKVKYSLNQNDQEDAVDIELVGEDKTSPASMLSTSTDKPSLVGSEEIA 590
Query: 599 AVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRP 658
V SLWSGIPVQQ+TADER LLVGL+++L+KRVIGQD+AV AIS+AVKRSRVGL DP+RP
Sbjct: 591 RVTSLWSGIPVQQLTADERKLLVGLDDELRKRVIGQDDAVLAISKAVKRSRVGLNDPDRP 650
Query: 659 TAAMLFCGPTGVGKTELAKSLAACYFGS 686
A ++FCGPTGVGKTEL K+LAA YFGS
Sbjct: 651 IATLIFCGPTGVGKTELTKALAASYFGS 678
>gi|218194798|gb|EEC77225.1| hypothetical protein OsI_15769 [Oryza sativa Indica Group]
Length = 956
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/628 (64%), Positives = 489/628 (77%), Gaps = 31/628 (4%)
Query: 76 IPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID 135
+ + +VFERFTERAVKAV+FSQREA+ +G + V HLLLGL+AEDR P GFL SG+ ++
Sbjct: 65 VVVRAVFERFTERAVKAVVFSQREARGMGDETVAPHHLLLGLVAEDRSPLGFLASGVRVE 124
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGK------PFSSAAKMPFSISTKRVFEAAVEYSRSR 189
+AREA AA GK P A +PFS ++KRVFEAAVE+SR+
Sbjct: 125 RAREAC--------------RAAVGKEGLAQAPVGLATDVPFSGASKRVFEAAVEFSRNM 170
Query: 190 GYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKG 249
G NFI+PEHIALGLF ++D + VLK LGVD + LA A++R+QGELAK+GREP
Sbjct: 171 GCNFISPEHIALGLFNLNDPTTNNVLKSLGVDSSQLAKQALTRVQGELAKDGREPVGLSS 230
Query: 250 --VRENSI--SGKTAALK-SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQ 304
VRE GK+A +K S + SAL FC+DLT RAS LIDPVIGR+ EI+R++Q
Sbjct: 231 FKVREKFTPGGGKSAIVKYSNKKKEKSALALFCLDLTMRASGGLIDPVIGRKDEIERVVQ 290
Query: 305 ILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER 364
I+CRRTKNNPILLGE+GVGKTAIAEGLA +I +VP+FL+ KRI+SLD+ LLMAGAKER
Sbjct: 291 IICRRTKNNPILLGEAGVGKTAIAEGLAHKIANGDVPIFLVGKRILSLDVALLMAGAKER 350
Query: 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL 424
GELEARVT+LI E++K+GDVILFIDEVHTLIGSG GRG+KG GLDI+NLLKP+L RGEL
Sbjct: 351 GELEARVTSLIREVRKAGDVILFIDEVHTLIGSGIAGRGSKGAGLDIANLLKPALARGEL 410
Query: 425 QCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE 484
QCIASTT DEHR F+KDKALARRFQPVL++EPSQEDAV+ILLGLREKYE +H CK+TLE
Sbjct: 411 QCIASTTLDEHRLHFDKDKALARRFQPVLVNEPSQEDAVKILLGLREKYETYHKCKYTLE 470
Query: 485 AINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEI 544
+INAAV+LSARYI+DR+LPDKAIDL+DEAGSRA +E FKRKKE+Q ILSK PD+YWQEI
Sbjct: 471 SINAAVYLSARYIADRHLPDKAIDLIDEAGSRARMESFKRKKEEQCSILSKSPDEYWQEI 530
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTS--EIVVESSLPSAS----DDDEPAVVGPDDIA 598
R VQ MHEV +++KY D E+V E AS D+P++VG ++IA
Sbjct: 531 RAVQNMHEVALTNKVKYSLNQNDQEDAVDIELVGEDKTSPASMLSTSTDKPSLVGSEEIA 590
Query: 599 AVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRP 658
V SLWSGIPVQQ+TADER LLVGL+++L+KRVIGQD+AV AIS+AVKRSRVGL DP+RP
Sbjct: 591 RVTSLWSGIPVQQLTADERKLLVGLDDELRKRVIGQDDAVLAISKAVKRSRVGLNDPDRP 650
Query: 659 TAAMLFCGPTGVGKTELAKSLAACYFGS 686
A ++FCGPTGVGKTEL K+LAA YFGS
Sbjct: 651 IATLIFCGPTGVGKTELTKALAASYFGS 678
>gi|326498075|dbj|BAJ94900.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 946
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/626 (63%), Positives = 485/626 (77%), Gaps = 31/626 (4%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKA 137
+ +VFERFTERAVKAV+ SQREA+ +G ++V HLLLGL+AEDR GFL SG+ I++A
Sbjct: 76 VRAVFERFTERAVKAVVLSQREARGMGDEVVAPHHLLLGLVAEDRSAAGFLASGVRIERA 135
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKM----PFSISTKRVFEAAVEYSRSRGYNF 193
REA + A +G P +A + PFS ++KRVF AAVE+SR+ G NF
Sbjct: 136 REACRA------------AVGKGGPAQAATGLATDVPFSGASKRVFVAAVEFSRNMGCNF 183
Query: 194 IAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP----SLAKG 249
I+P+HIALGLF +DD + +LK LGV LA A++R++GELAK+GREP S
Sbjct: 184 ISPDHIALGLFDLDDPTTNSILKSLGVVPAQLAKQALTRVKGELAKDGREPLGLSSFKLR 243
Query: 250 VRENSISGKTAALK-SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR 308
+ + +G+T K S + SAL QFC+DLT RAS IDPVIGR EI+R++QI+CR
Sbjct: 244 DKSTAGNGRTGIAKYSNKKKEKSALAQFCIDLTMRASGGFIDPVIGRAKEIERVVQIICR 303
Query: 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368
RTKNNPILLGE+GVGKTAIAEGLA++I +VP+FL+ KRI+SLD+ LLMAGAKERGELE
Sbjct: 304 RTKNNPILLGEAGVGKTAIAEGLALKIANGDVPIFLVGKRILSLDVALLMAGAKERGELE 363
Query: 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA 428
ARVT+LI E++K+ DVILFIDEVHTLIGSG GRGNKG GLDI+NLLKP+L RGELQCIA
Sbjct: 364 ARVTSLIREVRKADDVILFIDEVHTLIGSGIAGRGNKGAGLDIANLLKPALARGELQCIA 423
Query: 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINA 488
STT DEHR FEKDKALARRFQPV ++EPSQEDAV+ILLGLREKYE +H CK+TLE INA
Sbjct: 424 STTLDEHRLHFEKDKALARRFQPVFVNEPSQEDAVKILLGLREKYETYHKCKYTLEGINA 483
Query: 489 AVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQ 548
AV+LS RYI DR+LPDKAIDL+DEAGSRA +E FK+KKE+Q I+ K PD+YWQEIR VQ
Sbjct: 484 AVYLSMRYIPDRHLPDKAIDLIDEAGSRARMESFKKKKEEQCSIILKSPDEYWQEIRAVQ 543
Query: 549 AMHEVVQGSRLKY--------DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
AMHEV Q +RLKY ++V + D S+ ++ PS S DEP+VVG ++IA V
Sbjct: 544 AMHEVAQTNRLKYSLNENDQENEVNVEVLDDSKTSPRTT-PSTS-ADEPSVVGSEEIARV 601
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
SLWSGIPVQQ+TADER LLVGL+++L+KRVIGQD+AV AISRAVKRSRVG+ DP+RP A
Sbjct: 602 TSLWSGIPVQQLTADERKLLVGLDDELRKRVIGQDDAVVAISRAVKRSRVGMSDPDRPIA 661
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGS 686
+LFCGPTGVGKTEL K+LA+ YFGS
Sbjct: 662 TLLFCGPTGVGKTELTKALASTYFGS 687
>gi|357149265|ref|XP_003575053.1| PREDICTED: chaperone protein ClpD1, chloroplastic-like
[Brachypodium distachyon]
Length = 944
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/629 (63%), Positives = 489/629 (77%), Gaps = 17/629 (2%)
Query: 70 RKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLE 129
R RR I SVFERFTERAVKAV+ SQREAK LG V +H+LLGL+AEDR GFL
Sbjct: 63 RVRRGGAVIRSVFERFTERAVKAVVLSQREAKGLGAGAVAPRHMLLGLVAEDRSAGGFLS 122
Query: 130 SGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSR 189
SGI+I++ARE SI QD +PFS + KRVFE AVE+S++
Sbjct: 123 SGISIERAREECRSI----GAQDAGAPPPPPAGSGLETDVPFSGTCKRVFEVAVEFSKNM 178
Query: 190 GYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKG 249
G +FI+PEH+AL LFT+DD + +L+ LG D + LA+VA++RLQGELAK+GR+P+ A
Sbjct: 179 GCSFISPEHLALALFTLDDPTTNTLLRSLGADPSQLASVALARLQGELAKDGRDPAGASS 238
Query: 250 VR--ENSISG--KTAALKSPGRTR-ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQ 304
+ E S +G ++A KS + + AL+QFC+DLT +AS IDP+IGRE EI+R++Q
Sbjct: 239 FKVPEKSPAGAGRSAFTKSLSKKKEKGALDQFCLDLTTQASGGFIDPIIGREEEIERVVQ 298
Query: 305 ILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER 364
I+CRRTKNNPILLGE+GVGKTAIAEGLA+RI +VP++L++KRIMSLD+GLL+AGAKER
Sbjct: 299 IICRRTKNNPILLGEAGVGKTAIAEGLALRIANGDVPIYLVAKRIMSLDVGLLIAGAKER 358
Query: 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL 424
GELE+RVT LI E++++GDVILFIDEVH LIGSGTVG+ +KG GLDISNLLKP L RGEL
Sbjct: 359 GELESRVTNLIREVREAGDVILFIDEVHNLIGSGTVGK-SKGAGLDISNLLKPPLARGEL 417
Query: 425 QCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE 484
QCIA+TT DEHR FEKDKALARRFQPVL+ EPSQEDAV+ILLGLRE YE +H CKFTLE
Sbjct: 418 QCIAATTLDEHRMHFEKDKALARRFQPVLVEEPSQEDAVKILLGLRENYETYHKCKFTLE 477
Query: 485 AINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEI 544
AINAAV+LSARYI DR LPDKAIDL+DEAGSRA IE F+RKKE Q+ +L K PD+YWQEI
Sbjct: 478 AINAAVYLSARYIPDRQLPDKAIDLLDEAGSRARIESFQRKKEGQSSVLLKAPDEYWQEI 537
Query: 545 RTVQAMHEVVQGSRLKYD-DVVASMGDTSEIVVE------SSLPSASDDDEPAVVGPDDI 597
+ V+AMHEVV ++ KY + A D+S + S+ S+ +EP VVG ++I
Sbjct: 538 KAVKAMHEVVLSNKTKYSPNENAQENDSSNTEKQCQEKAGSTSTSSPSVEEPVVVGTEEI 597
Query: 598 AAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNR 657
A VASLWSGIPVQQ+TAD++ +LVGL+++L+KRVIGQD+AV AISRAVKRSRVGL DP+R
Sbjct: 598 ARVASLWSGIPVQQLTADDKKILVGLDDELRKRVIGQDDAVVAISRAVKRSRVGLSDPDR 657
Query: 658 PTAAMLFCGPTGVGKTELAKSLAACYFGS 686
P A +LFCGPTGVGKTEL K+LAA YFGS
Sbjct: 658 PIATLLFCGPTGVGKTELTKALAASYFGS 686
>gi|242061800|ref|XP_002452189.1| hypothetical protein SORBIDRAFT_04g021410 [Sorghum bicolor]
gi|241932020|gb|EES05165.1| hypothetical protein SORBIDRAFT_04g021410 [Sorghum bicolor]
Length = 957
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/623 (62%), Positives = 487/623 (78%), Gaps = 16/623 (2%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKA 137
+ +VFERFTERAVKAV+ SQREA+ LG+ V +HL LGL+AEDR GFL SGI I++A
Sbjct: 79 VRAVFERFTERAVKAVVLSQREARGLGEPAVAPRHLFLGLVAEDRSSGGFLSSGINIERA 138
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSA--AKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
RE I + ++ D+ AA +P S +PFS + K+VF+ AV S++ G +FI+
Sbjct: 139 REECRGIAAARDDADST-AAPSSRPGSGGLDTDVPFSATAKQVFDVAVVLSKNMGASFIS 197
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP----SLAKGVR 251
PEH+A+ LFT+DD + +L+ LG D +HLA+VAV RLQ ELAK+GREP S +
Sbjct: 198 PEHLAIALFTLDDPTTNNLLRSLGADPSHLASVAVDRLQAELAKDGREPAEPSSFKVPKK 257
Query: 252 ENSISGKTAALKSPGRTR-ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT 310
+ +G++A S + + AL+QFC+DLT +AS IDP+IGRE EI+R++QI+CRRT
Sbjct: 258 APAGAGRSAFSHSLTKKKDKGALDQFCLDLTTQASGGFIDPIIGREDEIERVVQIICRRT 317
Query: 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370
KNNPILLGE+GVGKTAIAEGLA+RI +VP++L++KRI+SLD+GLL+AGAKERGELE+R
Sbjct: 318 KNNPILLGEAGVGKTAIAEGLALRIANGDVPIYLVAKRILSLDVGLLIAGAKERGELESR 377
Query: 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430
VT +I E++++GDVILFIDEVH LIGSGTVG+G KG+GLDI NLLKP+L RGELQCIA+T
Sbjct: 378 VTNIIREVREAGDVILFIDEVHNLIGSGTVGKG-KGSGLDIGNLLKPALARGELQCIAAT 436
Query: 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490
T DEHR FEKDKALARRFQPVL+ EPSQEDAV+ILLGLREKYE +H CKFTLEAINAAV
Sbjct: 437 TLDEHRMHFEKDKALARRFQPVLVDEPSQEDAVKILLGLREKYETYHKCKFTLEAINAAV 496
Query: 491 HLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM 550
+LSARYI DR LPDKAIDL+DEAGSRA +E F +KKE Q+ IL K PD+YWQEIR QAM
Sbjct: 497 YLSARYIPDRQLPDKAIDLIDEAGSRARMESFNKKKEGQSSILLKSPDEYWQEIRAAQAM 556
Query: 551 HEVVQGSRLKY-------DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
HEVV ++ KY + A++ S +ES+ S+ DEP VVG ++IA VASL
Sbjct: 557 HEVVLSNKAKYSPNENAQESGSATVEAPSRDNIESTSGSSLSADEPIVVGTEEIARVASL 616
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
WSGIPVQQ+TAD++ LLVGL+++L+KRVIGQD+AV AISRAVKRSRVGL DP+RP A +L
Sbjct: 617 WSGIPVQQLTADDKKLLVGLDDELRKRVIGQDDAVVAISRAVKRSRVGLNDPDRPIATLL 676
Query: 664 FCGPTGVGKTELAKSLAACYFGS 686
FCGPTGVGKTEL K+LAA YFGS
Sbjct: 677 FCGPTGVGKTELTKALAASYFGS 699
>gi|26518520|gb|AAN78327.1| ATP-dependent Clp protease ATP-binding subunit precursor [Oryza
sativa Indica Group]
Length = 938
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/616 (64%), Positives = 479/616 (77%), Gaps = 20/616 (3%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
FERFTERAVKAV+ SQREAK LG+ V +HLLLGLIAEDR GFL SGI I++ARE
Sbjct: 74 FERFTERAVKAVVLSQREAKGLGEGAVAPRHLLLGLIAEDRSAGGFLSSGINIERAREEC 133
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKM--PFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
I D P S +M PFS S KRVFE AVE+SR+ G +FI+PEH+
Sbjct: 134 RGIGAR------DLTPGAPSPSGSGLEMDIPFSGSCKRVFEVAVEFSRNMGCSFISPEHL 187
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS--- 256
AL LFT+DD + +L+ LG D + LA+VA++RLQ ELAK+GREP+ A + S
Sbjct: 188 ALALFTLDDPTTNSLLRSLGADPSQLASVALTRLQAELAKDGREPAGASSFKVPKKSPAG 247
Query: 257 -GKTAALKS-PGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
G++A KS + AL+QFC+DLT +AS IDP+IGRE EI+R++QI+CRRTKNNP
Sbjct: 248 AGRSAFSKSLNSKKEKGALDQFCLDLTTQASGGFIDPIIGREEEIERVVQIICRRTKNNP 307
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
ILLGE+GVGKTAIAEGLA+RI +VP++L++KRIMSLD+GLL+AGAKERGELE+RVT+L
Sbjct: 308 ILLGEAGVGKTAIAEGLALRIANGDVPIYLVAKRIMSLDVGLLIAGAKERGELESRVTSL 367
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
I E++++GDVILFIDEVH LIGSGTVG+G KG GLDI NLLKP L RGELQCIA+TT DE
Sbjct: 368 IREVREAGDVILFIDEVHNLIGSGTVGKG-KGAGLDIGNLLKPPLARGELQCIAATTLDE 426
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
HR FEKDKALARRFQPVL+ EPSQ+DAV+ILLGLREKYE +H CKFTLEAINAAV+LSA
Sbjct: 427 HRMHFEKDKALARRFQPVLVEEPSQDDAVKILLGLREKYETYHKCKFTLEAINAAVYLSA 486
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI DR LPDKAIDL+DEAGSRA +E F RKKE Q+ IL K PD+YWQEIR Q MHEVV
Sbjct: 487 RYIPDRQLPDKAIDLIDEAGSRARMESFNRKKEGQSSILLKSPDEYWQEIRAAQNMHEVV 546
Query: 555 QGSRLKY----DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+++KY ++ A++ SE + E L S +EP VVG ++IA VASLWSGIPVQ
Sbjct: 547 SSNQMKYSPCQENGSAAIKAPSEDMNE--LTSELQVEEPIVVGTEEIARVASLWSGIPVQ 604
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
Q+TAD+R LLVGL+ +L+KRVIGQD+AV AISRAVKRSRVGL DP+RP A +LFCGPTGV
Sbjct: 605 QLTADDRKLLVGLDGELRKRVIGQDDAVMAISRAVKRSRVGLNDPDRPIATLLFCGPTGV 664
Query: 671 GKTELAKSLAACYFGS 686
GKTEL K+LAA YFGS
Sbjct: 665 GKTELTKALAASYFGS 680
>gi|115446435|ref|NP_001046997.1| Os02g0526400 [Oryza sativa Japonica Group]
gi|75123405|sp|Q6H795.1|CLPD1_ORYSJ RecName: Full=Chaperone protein ClpD1, chloroplastic; AltName:
Full=ATP-dependent Clp protease ATP-binding subunit ClpD
homolog 1; AltName: Full=Casein lytic proteinase D1;
Flags: Precursor
gi|49388289|dbj|BAD25404.1| ATP-dependent Clp protease ATP-binding subunit precursor [Oryza
sativa Japonica Group]
gi|113536528|dbj|BAF08911.1| Os02g0526400 [Oryza sativa Japonica Group]
Length = 938
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/616 (64%), Positives = 478/616 (77%), Gaps = 20/616 (3%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
FERFTERAVKAV+ SQREAK LG+ V +HLLLGLIAEDR GFL SGI I++ARE
Sbjct: 74 FERFTERAVKAVVLSQREAKGLGEGAVAPRHLLLGLIAEDRSAGGFLSSGINIERAREEC 133
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKM--PFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
I D P S +M PFS S KRVFE AVE+SR+ G +FI+PEH+
Sbjct: 134 RGIGAR------DLTPGAPSPSGSGLEMDIPFSGSCKRVFEVAVEFSRNMGCSFISPEHL 187
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS--- 256
AL LFT+DD + +L+ LG D + LA+VA++RLQ ELAK+ REP+ A + S
Sbjct: 188 ALALFTLDDPTTNSLLRSLGADPSQLASVALTRLQAELAKDCREPAGASSFKVPKKSPAG 247
Query: 257 -GKTAALKS-PGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
G++A KS + AL+QFC+DLT +AS IDP+IGRE EI+R++QI+CRRTKNNP
Sbjct: 248 AGRSAFSKSLNSKKEKGALDQFCLDLTTQASGGFIDPIIGREEEIERVVQIICRRTKNNP 307
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
ILLGE+GVGKTAIAEGLA+RI +VP++L++KRIMSLD+GLL+AGAKERGELE+RVT+L
Sbjct: 308 ILLGEAGVGKTAIAEGLALRIANGDVPIYLVAKRIMSLDVGLLIAGAKERGELESRVTSL 367
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
I E++++GDVILFIDEVH LIGSGTVG+G KG GLDI NLLKP L RGELQCIA+TT DE
Sbjct: 368 IREVREAGDVILFIDEVHNLIGSGTVGKG-KGAGLDIGNLLKPPLARGELQCIAATTLDE 426
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
HR FEKDKALARRFQPVL+ EPSQ+DAV+ILLGLREKYE +H CKFTLEAINAAV+LSA
Sbjct: 427 HRMHFEKDKALARRFQPVLVEEPSQDDAVKILLGLREKYETYHKCKFTLEAINAAVYLSA 486
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI DR LPDKAIDL+DEAGSRA +E F RKKE Q+ IL K PD+YWQEIR Q MHEVV
Sbjct: 487 RYIPDRQLPDKAIDLIDEAGSRARMESFNRKKEGQSSILLKSPDEYWQEIRAAQNMHEVV 546
Query: 555 QGSRLKY----DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+++KY ++ A++ SE + E L S +EP VVG ++IA VASLWSGIPVQ
Sbjct: 547 SSNQMKYSPRQENGSAAIKAPSEDMNE--LTSELQVEEPIVVGTEEIARVASLWSGIPVQ 604
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
Q+TAD+R LLVGL+ +L+KRVIGQD+AV AISRAVKRSRVGL DP+RP A +LFCGPTGV
Sbjct: 605 QLTADDRKLLVGLDGELRKRVIGQDDAVMAISRAVKRSRVGLNDPDRPIATLLFCGPTGV 664
Query: 671 GKTELAKSLAACYFGS 686
GKTEL K+LAA YFGS
Sbjct: 665 GKTELTKALAASYFGS 680
>gi|413937085|gb|AFW71636.1| hypothetical protein ZEAMMB73_446197 [Zea mays]
Length = 947
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/623 (62%), Positives = 490/623 (78%), Gaps = 17/623 (2%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKA 137
+ +VFERFTERAVKAV+ SQREA+ LG+ V +HLLLGL+AEDR GFL SGI I++A
Sbjct: 70 VRAVFERFTERAVKAVVLSQREARGLGEPAVAPRHLLLGLVAEDRSSGGFLSSGINIERA 129
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSA--AKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
RE I S + D+ AA+ +P SS +PF+ TK+VF+ AV S++ G +F++
Sbjct: 130 REECRGIAASARDADSATAAS--RPGSSGLDTDVPFAAPTKQVFDVAVVLSKNMGSSFVS 187
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP----SLAKGVR 251
PEH+A+ LF++DD + +L+ LG D +HLA+VAV RLQ ELAK+GR+P S +
Sbjct: 188 PEHLAIALFSLDDPTTNNLLRSLGADPSHLASVAVDRLQAELAKDGRDPAEPSSFKVPKK 247
Query: 252 ENSISGKTAALKSPGRTR-ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT 310
+ +G++A +S + + AL+QFC+DLT +AS IDP+IGRE EI+R++QI+CRRT
Sbjct: 248 APAAAGRSAFSQSLTKKKDKGALDQFCLDLTTQASGGFIDPIIGREEEIERVVQIVCRRT 307
Query: 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370
KNNPILLGE+GVGKTAIAEGLA+RI +VP++L++KRI+SLD+GLL+AGAKERGELE+R
Sbjct: 308 KNNPILLGEAGVGKTAIAEGLALRIANGDVPIYLVAKRILSLDVGLLIAGAKERGELESR 367
Query: 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430
VT +I E++++GDVILFIDEVH LIGSGTVG+ +KG+GLDI NLLKP+L RGELQCIA+T
Sbjct: 368 VTNIIREVREAGDVILFIDEVHNLIGSGTVGK-SKGSGLDIGNLLKPALARGELQCIAAT 426
Query: 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490
T DEHR FEKDKALARRFQPVL+ EPSQEDAV+ILLGLREKYE +H CKFTLEAINAAV
Sbjct: 427 TLDEHRMHFEKDKALARRFQPVLVDEPSQEDAVKILLGLREKYETYHKCKFTLEAINAAV 486
Query: 491 HLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM 550
+LSARYI DR LPDKAIDL+DEAGSRA +E F RKKE Q+ IL K PD+YWQEIR QAM
Sbjct: 487 YLSARYIPDRQLPDKAIDLIDEAGSRARMESFNRKKEGQSSILLKSPDEYWQEIRAAQAM 546
Query: 551 HEVVQGSRLKY---DDVVASMGDTSEIV----VESSLPSASDDDEPAVVGPDDIAAVASL 603
HEVV ++ KY ++ S E + +ES+ S+ DEP VVG ++IA VASL
Sbjct: 547 HEVVLSNKEKYSPNENAEESGSANVEALHRDNIESTSTSSLSADEPVVVGTEEIARVASL 606
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
WSGIPVQQ+TAD++ LLVGL+++L+KRVIGQD+AV AISRAVKRSRVGL DP+RP A +L
Sbjct: 607 WSGIPVQQLTADDKKLLVGLDDELRKRVIGQDDAVVAISRAVKRSRVGLNDPDRPIATLL 666
Query: 664 FCGPTGVGKTELAKSLAACYFGS 686
FCGPTGVGKTEL K+LAA YFGS
Sbjct: 667 FCGPTGVGKTELTKALAASYFGS 689
>gi|222628805|gb|EEE60937.1| hypothetical protein OsJ_14686 [Oryza sativa Japonica Group]
Length = 865
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/601 (64%), Positives = 465/601 (77%), Gaps = 31/601 (5%)
Query: 103 LGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGK- 161
+G + V HLLLGL+AEDR P GFL SG+ +++AREA AA GK
Sbjct: 1 MGDETVAPHHLLLGLVAEDRSPLGFLASGVRVERAREAC--------------RAAVGKE 46
Query: 162 -----PFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLK 216
P A +PFS ++KRVFEAAVE+SR+ G NFI+PEHIALGLF ++D + VLK
Sbjct: 47 GLAQAPVGLATDVPFSGASKRVFEAAVEFSRNMGCNFISPEHIALGLFNLNDPTTNNVLK 106
Query: 217 RLGVDVNHLAAVAVSRLQGELAKEGREPSLAKG--VRENSI--SGKTAALKSPGRTR-AS 271
LGVD + LA A++R+QGELAK+GREP VRE GK+A +K + + S
Sbjct: 107 SLGVDSSQLAKQALTRVQGELAKDGREPVGLSSFKVREKFTPGGGKSAIVKYSNKNKEKS 166
Query: 272 ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGL 331
AL FC+DLT RAS LIDPVIGR+ EI+R++QI+CRRTKNNPILLGE+GVGKTAIAEGL
Sbjct: 167 ALALFCLDLTMRASGGLIDPVIGRKDEIERVVQIICRRTKNNPILLGEAGVGKTAIAEGL 226
Query: 332 AIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391
A +I +VP+FL+ KRI+SLD+ LLMAGAKERGELEARVT+LI E++K+GDVILFIDEV
Sbjct: 227 AHKIANGDVPIFLVGKRILSLDVALLMAGAKERGELEARVTSLIREVRKAGDVILFIDEV 286
Query: 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQP 451
HTLIGSG GRG+KG GLDI+NLLKP+L RGELQCIASTT DEHR F+KDKALARRFQP
Sbjct: 287 HTLIGSGIAGRGSKGAGLDIANLLKPALARGELQCIASTTLDEHRLHFDKDKALARRFQP 346
Query: 452 VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511
VL++EPSQEDAV+ILLGLREKYE +H CK+TLE+INAAV+LSARYI+DR+LPDKAIDL+D
Sbjct: 347 VLVNEPSQEDAVKILLGLREKYETYHKCKYTLESINAAVYLSARYIADRHLPDKAIDLID 406
Query: 512 EAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDT 571
EAGSRA +E FKRKKE+Q ILSK PD+YWQEIR VQ MHEV +++KY D
Sbjct: 407 EAGSRARMESFKRKKEEQCSILSKSPDEYWQEIRAVQNMHEVALTNKVKYSLNQNDQEDA 466
Query: 572 S--EIVVESSLPSAS----DDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEE 625
E+V E AS D+P++VG ++IA V SLWSGIPVQQ+TADER LLVGL++
Sbjct: 467 VDIELVGEDKTSPASMLSTSTDKPSLVGSEEIARVTSLWSGIPVQQLTADERKLLVGLDD 526
Query: 626 QLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685
+L+KRVIGQD+AV AIS+AVKRSRVGL DP+RP A ++FCGPTGVGKTEL K+LAA YFG
Sbjct: 527 ELRKRVIGQDDAVLAISKAVKRSRVGLNDPDRPIATLIFCGPTGVGKTELTKALAASYFG 586
Query: 686 S 686
S
Sbjct: 587 S 587
>gi|125539703|gb|EAY86098.1| hypothetical protein OsI_07468 [Oryza sativa Indica Group]
Length = 889
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/600 (64%), Positives = 464/600 (77%), Gaps = 20/600 (3%)
Query: 98 REAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157
REAK LG+ V +HLLLGLIAEDR GFL SGI I++ARE I D
Sbjct: 41 REAKGLGEGAVAPRHLLLGLIAEDRSAGGFLSSGINIERAREECRGIGAR------DLTP 94
Query: 158 AQGKPFSSAAKM--PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVL 215
P S +M PFS S KRVFE AVE+SR+ G +FI+PEH+AL LFT+DD + +L
Sbjct: 95 GAPSPSGSGLEMDIPFSGSCKRVFEVAVEFSRNMGCSFISPEHLALALFTLDDPTTNSLL 154
Query: 216 KRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS----GKTAALKS-PGRTRA 270
+ LG D + LA+VA++RLQ ELAK+GREP+ A + S G++A KS +
Sbjct: 155 RSLGADPSQLASVALTRLQAELAKDGREPAGASSFKVPKKSPAGAGRSAFSKSLNSKKEK 214
Query: 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEG 330
AL+QFC+DLT +AS IDP+IGRE EI+R++QI+CRRTKNNPILLGE+GVGKTAIAEG
Sbjct: 215 GALDQFCLDLTTQASGGFIDPIIGREEEIERVVQIICRRTKNNPILLGEAGVGKTAIAEG 274
Query: 331 LAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDE 390
LA+RI +VP++L++KRIMSLD+GLL+AGAKERGELE+RVT+LI E++++GDVILFIDE
Sbjct: 275 LALRIANGDVPIYLVAKRIMSLDVGLLIAGAKERGELESRVTSLIREVREAGDVILFIDE 334
Query: 391 VHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ 450
VH LIGSGTVG+G KG GLDI NLLKP L RGELQCIA+TT DEHR FEKDKALARRFQ
Sbjct: 335 VHNLIGSGTVGKG-KGAGLDIGNLLKPPLARGELQCIAATTLDEHRMHFEKDKALARRFQ 393
Query: 451 PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLV 510
PVL+ EPSQ+DAV+ILLGLREKYE +H CKFTLEAINAAV+LSARYI DR LPDKAIDL+
Sbjct: 394 PVLVEEPSQDDAVKILLGLREKYETYHKCKFTLEAINAAVYLSARYIPDRQLPDKAIDLI 453
Query: 511 DEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY----DDVVA 566
DEAGSRA +E F RKKE Q+ IL K PD+YWQEIR Q MHEVV +++KY ++ A
Sbjct: 454 DEAGSRARMESFNRKKEGQSSILLKSPDEYWQEIRAAQNMHEVVSSNQMKYSPCQENGSA 513
Query: 567 SMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQ 626
++ SE + E L S +EP VVG ++IA VASLWSGIPVQQ+TAD+R LLVGL+ +
Sbjct: 514 AIKAPSEDMNE--LTSELQVEEPIVVGTEEIARVASLWSGIPVQQLTADDRKLLVGLDGE 571
Query: 627 LKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
L+KRVIGQD+AV AISRAVKRSRVGL DP+RP A +LFCGPTGVGKTEL K+LAA YFGS
Sbjct: 572 LRKRVIGQDDAVMAISRAVKRSRVGLNDPDRPIATLLFCGPTGVGKTELTKALAASYFGS 631
>gi|326499772|dbj|BAJ86197.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 928
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/628 (60%), Positives = 472/628 (75%), Gaps = 42/628 (6%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKARE 139
+VFERFTERAVKAV+ SQ+EA+ LG+ V +HLLLGL+AEDR GFL SGIT+++ARE
Sbjct: 63 AVFERFTERAVKAVVHSQKEARGLGEGAVAPRHLLLGLVAEDRSAGGFLSSGITVERARE 122
Query: 140 AVVSIWHSTNNQ-------DTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYN 192
+ + DTD +PF +RVFE AVE SR+ G +
Sbjct: 123 ECRGLIGAAAAAAHKAGGLDTD--------------VPFDGGCRRVFEVAVELSRNMGCS 168
Query: 193 FIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRE 252
FI+PEH+A+ LFT+DD + +L+ LG D + LA+VAV+RL ELAK+GR+ + A ++
Sbjct: 169 FISPEHLAIALFTLDDPTTNNLLRSLGADPSQLASVAVTRLHEELAKDGRDTAGASSLK- 227
Query: 253 NSISGKTAALKSPGRT----------RASALEQFCVDLTARASEELIDPVIGRETEIQRI 302
+ K A GR+ AL+QFC+DLT +AS IDP+IGRE EI+R+
Sbjct: 228 --VPEKAPAGAGAGRSAFSKSLSKKKDKGALDQFCLDLTTQASGGFIDPIIGREEEIERV 285
Query: 303 IQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362
+QI+CRRTKNNPILLGE+GVGKTAIAEGLA+RI +VP+FL++KRIMSLD+GLL+AGAK
Sbjct: 286 VQIICRRTKNNPILLGEAGVGKTAIAEGLALRIANGDVPIFLVAKRIMSLDIGLLIAGAK 345
Query: 363 ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG 422
ERGELE+R+T+LI E++++GDVILFIDEVH L+GSGT G+G LDISNLLKP L RG
Sbjct: 346 ERGELESRITSLIREVREAGDVILFIDEVHNLVGSGTAGKGKGAG-LDISNLLKPPLARG 404
Query: 423 ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFT 482
ELQCIA+TT DEHR FEKDKAL RRFQPV + EPSQEDAV+ILLGLRE YE +H CKFT
Sbjct: 405 ELQCIAATTLDEHRMHFEKDKALNRRFQPVFVDEPSQEDAVKILLGLRENYETYHKCKFT 464
Query: 483 LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQ 542
LEAINAAV+LSARYI DR LPDKAIDL+DEAGSRA IE +++KKE Q+ +L K PD+YWQ
Sbjct: 465 LEAINAAVYLSARYIPDRQLPDKAIDLIDEAGSRARIESYQKKKEGQSSVLLKEPDEYWQ 524
Query: 543 EIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLP----SASDDDEPAVVGPDDIA 598
EI+ VQAMH+VV +++KY + + S + + P + S +EP VVG ++IA
Sbjct: 525 EIKAVQAMHDVVLSNKMKYSPNENNQQNAS---LNAEGPRQDKAESTTEEPIVVGTEEIA 581
Query: 599 AVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRP 658
VASLWSGIPVQQ+TAD++ +LVGL+++L+KRVIGQD+AVAAISRAVKRSRVGL DP+RP
Sbjct: 582 RVASLWSGIPVQQLTADDKKILVGLDDELRKRVIGQDDAVAAISRAVKRSRVGLSDPDRP 641
Query: 659 TAAMLFCGPTGVGKTELAKSLAACYFGS 686
A MLFCGPTGVGKTEL K+LAA YFGS
Sbjct: 642 IATMLFCGPTGVGKTELTKALAASYFGS 669
>gi|167998873|ref|XP_001752142.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696537|gb|EDQ82875.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 881
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/612 (60%), Positives = 464/612 (75%), Gaps = 19/612 (3%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKA 137
+++VFERFTERA+K+V+ +QREAK+LGK V T+ LLLGLIAEDR G+L SG+TID+A
Sbjct: 13 VTAVFERFTERAIKSVMLAQREAKALGKREVGTEQLLLGLIAEDRGSEGYLSSGVTIDRA 72
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
REAV ++ + + + A +PFS +KRVFEAA+E+S+ G+N+IAPE
Sbjct: 73 REAVKALLNESEGSNL---------LGPATDVPFSHGSKRVFEAALEHSKKMGHNYIAPE 123
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HIA+ L VDDG A +VL +LGV L + AV++LQGEL KEGR S + + + + +G
Sbjct: 124 HIAIALLAVDDGGASKVLDKLGVKKGKLQSEAVAKLQGELEKEGRAASSSVAMPQKAAAG 183
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
T P + SAL FCVDLTA+A+E +DPVIGR+ E+QR++QIL RRTKNNPILL
Sbjct: 184 GT-----PSKREKSALNDFCVDLTAKAAEGKVDPVIGRDQEVQRVVQILARRTKNNPILL 238
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA+RI + +VP FL+ KR+MSLDMGLL+AGAKERGE+E RVT+LI E
Sbjct: 239 GEPGVGKTAIAEGLAMRICKGDVPDFLIGKRVMSLDMGLLLAGAKERGEMETRVTSLIEE 298
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKG-TGLDISNLLKPSLGRGELQCIASTTQDEHR 436
+ +G+VIL IDEVHTL+GSG+VGRG GLDI+NLLKP+L RGELQCI +TT DEHR
Sbjct: 299 TRSAGNVILLIDEVHTLVGSGSVGRGGSAGAGLDIANLLKPALARGELQCIGATTLDEHR 358
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKDKALARRFQPV++ EPSQEDAV IL+GLR +YE HH C T EA+ AV+L++RY
Sbjct: 359 KHIEKDKALARRFQPVMVLEPSQEDAVTILMGLRSRYEEHHRCHITSEAVETAVYLASRY 418
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ- 555
I+DR+LPDKAIDL+DEAGSRA I F+++KE+QT IL+K P +YW+EIR VQA E V
Sbjct: 419 IADRFLPDKAIDLLDEAGSRARINSFRKRKERQTSILTKSPSEYWREIRAVQASQESVSS 478
Query: 556 -GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITA 614
R+ + +G S +V S A +D P VVGP +IAAVAS+WSGIPV+Q+T
Sbjct: 479 FSYRINPCGYFSRLG--SILVSVSGSTDAPGEDLPVVVGPSEIAAVASMWSGIPVEQLTN 536
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
DE++ L+ LE+ L+ RV+GQD+AV AISRAV+R+RVGLKDPNRP AAMLFCGPTGVGKTE
Sbjct: 537 DEQIKLMNLEKLLQTRVVGQDDAVNAISRAVRRARVGLKDPNRPIAAMLFCGPTGVGKTE 596
Query: 675 LAKSLAACYFGS 686
L K+LA YFGS
Sbjct: 597 LTKALAQHYFGS 608
>gi|168009221|ref|XP_001757304.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691427|gb|EDQ77789.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 974
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/621 (59%), Positives = 461/621 (74%), Gaps = 24/621 (3%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKA 137
+++VFERFTERA+K+V+ +QREAK+LGK V T+ LLLGLIAEDR G+L SG+TI++A
Sbjct: 93 VTAVFERFTERAIKSVMLAQREAKALGKREVGTEQLLLGLIAEDRGSEGYLGSGVTIERA 152
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
REAV S+ ++ D A +PFS +KRVFEAA+E+S+ G+N+IAPE
Sbjct: 153 REAVKSLLDESDGSDL---------LGPATDVPFSHGSKRVFEAALEHSKKMGHNYIAPE 203
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HIA+ L VDDG A VL +LGV L + AV++LQGEL KEGR S + + + + +G
Sbjct: 204 HIAIALLAVDDGGASNVLDKLGVKKGKLQSEAVAKLQGELEKEGRAASSSVAMPQKAAAG 263
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A+ + R AL FCVD+TA+A+E IDPVIGR+ E+QR++QIL RRTKNNPILL
Sbjct: 264 AAASTRPSSRKEKGALHDFCVDITAQAAEGKIDPVIGRDKEVQRVVQILGRRTKNNPILL 323
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA+RI + +VP FL+ KR+MSLDMGLL+AGAKERGE+E RVT LI E
Sbjct: 324 GEPGVGKTAIAEGLAMRICKGDVPDFLIDKRVMSLDMGLLLAGAKERGEMETRVTNLIEE 383
Query: 378 IQKSGDVILFIDEVHTL-IGSGTVGRGNKGTGLDISNLLKPSLGRGEL-QCIASTTQDEH 435
+ +G+VIL IDEVHTL G+ G GLDI+NLLKP+L RGEL QCI +TT DEH
Sbjct: 384 TRTAGNVILLIDEVHTLVGSGSVGRGGSAGAGLDIANLLKPALARGELQQCIGATTLDEH 443
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKDKALARRFQPV++ EPSQEDAV IL+GLR +YE HH C T EA+ AAV+L++R
Sbjct: 444 RKHIEKDKALARRFQPVMVLEPSQEDAVTILMGLRSRYEEHHKCHITSEAVEAAVYLASR 503
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH-EVV 554
YI+DR+LPDKAIDL+DEAGSRA I F+++KE+QT IL+K P + WQEIR VQA +V+
Sbjct: 504 YIADRFLPDKAIDLLDEAGSRARINSFRKRKERQTSILTKSPSEIWQEIRAVQASEADVL 563
Query: 555 QGSRLKYDDVVASMGDTSEIVVES-SLPS--------ASDDDEPAVVGPDDIAAVASLWS 605
G + +GD ES S+P SDD+EP VVGP +IAAVAS+WS
Sbjct: 564 TGDPSSLSTTESRIGDMDN---ESLSVPDNDALDASIVSDDEEPVVVGPGEIAAVASMWS 620
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV+Q+T+DE+M L+ LE+ L+ RV+GQD+AV AISRAV+R+RVGLKDPNRP AAMLFC
Sbjct: 621 GIPVEQLTSDEQMKLMNLEKSLQTRVVGQDDAVNAISRAVRRARVGLKDPNRPIAAMLFC 680
Query: 666 GPTGVGKTELAKSLAACYFGS 686
GPTGVGKTEL K+LA YFGS
Sbjct: 681 GPTGVGKTELTKALAQHYFGS 701
>gi|125582344|gb|EAZ23275.1| hypothetical protein OsJ_06970 [Oryza sativa Japonica Group]
Length = 784
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/527 (66%), Positives = 426/527 (80%), Gaps = 12/527 (2%)
Query: 169 MPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAV 228
+PFS S KRVFE AVE+SR+ G +FI+PEH+AL LFT+DD + +L+ LG D + LA+V
Sbjct: 3 IPFSGSCKRVFEVAVEFSRNMGCSFISPEHLALALFTLDDPTTNSLLRSLGADPSQLASV 62
Query: 229 AVSRLQGELAKEGREPSLAKGVRENSIS----GKTAALKS-PGRTRASALEQFCVDLTAR 283
A++RLQ ELAK+ REP+ A + S G++A KS + AL+QFC+DLT +
Sbjct: 63 ALTRLQAELAKDCREPAGASSFKVPKKSPAGAGRSAFSKSLNSKKEKGALDQFCLDLTTQ 122
Query: 284 ASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF 343
AS IDP+IGRE EI+R++QI+CRRTKNNPILLGE+GVGKTAIAEGLA+RI +VP++
Sbjct: 123 ASGGFIDPIIGREEEIERVVQIICRRTKNNPILLGEAGVGKTAIAEGLALRIANGDVPIY 182
Query: 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403
L++KRIMSLD+GLL+AGAKERGELE+RVT+LI E++++GDVILFIDEVH LIGSGTVG+G
Sbjct: 183 LVAKRIMSLDVGLLIAGAKERGELESRVTSLIREVREAGDVILFIDEVHNLIGSGTVGKG 242
Query: 404 NKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAV 463
KG GLDI NLLKP L RGELQCIA+TT DEHR FEKDKALARRFQPVL+ EPSQ+DAV
Sbjct: 243 -KGAGLDIGNLLKPPLARGELQCIAATTLDEHRMHFEKDKALARRFQPVLVEEPSQDDAV 301
Query: 464 RILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFK 523
+ILLGLREKYE +H CKFTLEAINAAV+LSARYI DR LPDKAIDL+DEAGSRA +E F
Sbjct: 302 KILLGLREKYETYHKCKFTLEAINAAVYLSARYIPDRQLPDKAIDLIDEAGSRARMESFN 361
Query: 524 RKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY----DDVVASMGDTSEIVVESS 579
RKKE Q+ IL K PD+YWQEIR Q MHEVV +++KY ++ A++ SE + E
Sbjct: 362 RKKEGQSSILLKSPDEYWQEIRAAQNMHEVVSSNQMKYSPRQENGSAAIKAPSEDMNE-- 419
Query: 580 LPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVA 639
L S +EP VVG ++IA VASLWSGIPVQQ+TAD+R LLVGL+ +L+KRVIGQD+AV
Sbjct: 420 LTSELQVEEPIVVGTEEIARVASLWSGIPVQQLTADDRKLLVGLDGELRKRVIGQDDAVM 479
Query: 640 AISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
AISRAVKRSRVGL DP+RP A +LFCGPTGVGKTEL K+LAA YFGS
Sbjct: 480 AISRAVKRSRVGLNDPDRPIATLLFCGPTGVGKTELTKALAASYFGS 526
>gi|302819816|ref|XP_002991577.1| hypothetical protein SELMODRAFT_186186 [Selaginella moellendorffii]
gi|300140610|gb|EFJ07331.1| hypothetical protein SELMODRAFT_186186 [Selaginella moellendorffii]
Length = 864
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/612 (59%), Positives = 456/612 (74%), Gaps = 35/612 (5%)
Query: 94 IFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQ-D 152
+ +QREAK GK V T+ LLLGLIAE+R+ GFL SG+TID+AREA+ ++ +N
Sbjct: 1 MLAQREAKLFGKKDVGTEQLLLGLIAEERNGEGFLGSGVTIDRAREALKNLLQESNQTFV 60
Query: 153 TDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAG 212
T D A+++PFS +KRVFEAA+E S+ G+N+I PEHIAL LFTVDDG A
Sbjct: 61 TSD--------KQASEIPFSSGSKRVFEAALEQSKKMGHNYITPEHIALALFTVDDGGAT 112
Query: 213 RVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASA 272
++L +LG+ L A ++ RLQGELAK+GR P A + S + ++ K PGR A
Sbjct: 113 KILDKLGLKTQKLQAESIVRLQGELAKDGRTPPPAMSLPAKSGATAASSSKRPGRKEKGA 172
Query: 273 LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLA 332
L FCVDLT RAS+ IDPVIGR++E+QR++QIL RRTKNNPILLGE GVGKTAIAEGLA
Sbjct: 173 LNDFCVDLTLRASDGKIDPVIGRDSEVQRVVQILARRTKNNPILLGEPGVGKTAIAEGLA 232
Query: 333 IRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVH 392
IRI VP FL KR+MSLDMGLL+AGAKERGELE+RVT+LI E +K+G+VIL IDEVH
Sbjct: 233 IRIASGNVPEFLTGKRVMSLDMGLLLAGAKERGELESRVTSLIEETRKAGNVILLIDEVH 292
Query: 393 TL--IGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ 450
TL GS GN G GLDI+NLLKP+L RGELQCI +TT DEHR EKDKALARRFQ
Sbjct: 293 TLVGSGSVGGRGGNNGAGLDIANLLKPALARGELQCIGATTLDEHRKHIEKDKALARRFQ 352
Query: 451 PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLV 510
PV+++EPSQEDAV+ILLG+R++YE +H C+ T EA++AAV+LS+RYI+DRYLPDKAIDL+
Sbjct: 353 PVIVNEPSQEDAVKILLGIRDRYEEYHKCRITQEAVDAAVYLSSRYIADRYLPDKAIDLI 412
Query: 511 DEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGD 570
DEAGSRA I+ FKR+KE++ ILSK P +YWQ IR VQA E + +++GD
Sbjct: 413 DEAGSRARIDAFKRRKEERVSILSKTPSEYWQAIRAVQAAQEAAFVPQ-------SALGD 465
Query: 571 TSEIVVES---SLPSASDDDEPAV-------------VGPDDIAAVASLWSGIPVQQITA 614
SE ++ES +LP A D D+ +V VGP +IAAV S+WSGIP++Q+T+
Sbjct: 466 -SEYLIESAANTLPKAVDIDQESVSLPVNELMEGSVIVGPSEIAAVTSMWSGIPIEQLTS 524
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
DE++ L+ LE+ L+ RV+GQD+AV AISRAV+R+RVGLKDP+RP AAMLFCGPTGVGKTE
Sbjct: 525 DEQLKLINLEKLLQTRVVGQDDAVNAISRAVRRARVGLKDPSRPIAAMLFCGPTGVGKTE 584
Query: 675 LAKSLAACYFGS 686
L K+LA +FG+
Sbjct: 585 LTKALAQHFFGA 596
>gi|302779890|ref|XP_002971720.1| hypothetical protein SELMODRAFT_147913 [Selaginella moellendorffii]
gi|300160852|gb|EFJ27469.1| hypothetical protein SELMODRAFT_147913 [Selaginella moellendorffii]
Length = 864
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/612 (59%), Positives = 455/612 (74%), Gaps = 35/612 (5%)
Query: 94 IFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQ-D 152
+ +QREAK GK V T+ LLLGLIAE+R+ GFL SG+TID+AREA ++ +N
Sbjct: 1 MLAQREAKLFGKKDVGTEQLLLGLIAEERNGEGFLGSGVTIDRAREAFKNLLQESNQTFV 60
Query: 153 TDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAG 212
T D A+++PFS +KRVFEAA+E S+ G+N+I PEHIAL LFTVDDG A
Sbjct: 61 TSD--------KQASEIPFSTGSKRVFEAALEQSKKMGHNYITPEHIALALFTVDDGGAT 112
Query: 213 RVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASA 272
++L +LG+ L A ++ RLQGELAK+GR P A + S + ++ K PGR A
Sbjct: 113 KILDKLGLKTQKLQAESIVRLQGELAKDGRTPPPAMSLPAKSGATAASSSKRPGRKEKGA 172
Query: 273 LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLA 332
L FCVDLT RAS+ IDPVIGR++E+QR++QIL RRTKNNPILLGE GVGKTAIAEGLA
Sbjct: 173 LNDFCVDLTLRASDGKIDPVIGRDSEVQRVVQILARRTKNNPILLGEPGVGKTAIAEGLA 232
Query: 333 IRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVH 392
IRI VP FL KR+MSLDMGLL+AGAKERGELE+RVT+LI E +K+G+VIL IDEVH
Sbjct: 233 IRIASGNVPEFLTGKRVMSLDMGLLLAGAKERGELESRVTSLIEETRKAGNVILLIDEVH 292
Query: 393 TL--IGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ 450
TL GS GN G GLDI+NLLKP+L RGELQCI +TT DEHR EKDKALARRFQ
Sbjct: 293 TLVGSGSVGGRGGNNGAGLDIANLLKPALARGELQCIGATTLDEHRKHIEKDKALARRFQ 352
Query: 451 PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLV 510
PV+++EPSQEDAV+ILLG+R++YE +H C+ T EA++AAV+LS+RYI+DRYLPDKAIDL+
Sbjct: 353 PVIVNEPSQEDAVKILLGIRDRYEEYHKCRITQEAVDAAVYLSSRYIADRYLPDKAIDLI 412
Query: 511 DEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGD 570
DEAGSRA I+ FKR+KE++ ILSK P +YWQ IR VQA E + +++GD
Sbjct: 413 DEAGSRARIDAFKRRKEERVSILSKTPSEYWQAIRAVQAAQEAAFVPQ-------SALGD 465
Query: 571 TSEIVVES---SLPSASDDDEPAV-------------VGPDDIAAVASLWSGIPVQQITA 614
SE ++ES +LP A D D+ +V VGP +IAAV S+WSGIP++Q+T+
Sbjct: 466 -SEYLIESAANTLPKAVDIDQESVSLPVNELMEGSVIVGPSEIAAVTSMWSGIPIEQLTS 524
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
DE++ L+ LE+ L+ RV+GQD+AV AISRAV+R+RVGLKDP+RP AAMLFCGPTGVGKTE
Sbjct: 525 DEQLKLINLEKLLQTRVVGQDDAVNAISRAVRRARVGLKDPSRPIAAMLFCGPTGVGKTE 584
Query: 675 LAKSLAACYFGS 686
L K+LA +FG+
Sbjct: 585 LTKALAQHFFGA 596
>gi|32487910|emb|CAE05369.1| OJ000315_02.14 [Oryza sativa Japonica Group]
Length = 877
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 323/510 (63%), Positives = 392/510 (76%), Gaps = 32/510 (6%)
Query: 76 IPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID 135
+ + +VFERFTERAVKAV+FSQREA+ +G + V HLLLGL+AEDR P GFL SG+ ++
Sbjct: 65 VVVRAVFERFTERAVKAVVFSQREARGMGDETVAPHHLLLGLVAEDRSPLGFLASGVRVE 124
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
+AREA + + AQ P A +PFS ++KRVFEAAVE+SR+ G NFI+
Sbjct: 125 RAREACRAAVGK-------EGLAQA-PVGLATDVPFSGASKRVFEAAVEFSRNMGCNFIS 176
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKG--VREN 253
PEHIALGLF ++D + VLK LGVD + LA A++R+QGELAK+GREP VRE
Sbjct: 177 PEHIALGLFNLNDPTTNNVLKSLGVDSSQLAKQALTRVQGELAKDGREPVGLSSFKVREK 236
Query: 254 SI--SGKTAALKSPGRTR-ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT 310
GK+A +K + + SAL FC+DLT RAS LIDPVIGR+ EI+R++QI+CRRT
Sbjct: 237 FTPGGGKSAIVKYSNKNKEKSALALFCLDLTMRASGGLIDPVIGRKDEIERVVQIICRRT 296
Query: 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370
KNNPILLGE+GVGKTAIAEGLA +I +VP+FL+ KRI+SLD+ LLMAGAKERGELEAR
Sbjct: 297 KNNPILLGEAGVGKTAIAEGLAHKIANGDVPIFLVGKRILSLDVALLMAGAKERGELEAR 356
Query: 371 VTTLISEIQKS-------------------GDVILFIDEVHTLIGSGTVGRGNKGTGLDI 411
VT+LI E++K+ GDVILFIDEVHTLIGSG GRG+KG GLDI
Sbjct: 357 VTSLIREVRKADPKLPFLVFNLQRAPKFHAGDVILFIDEVHTLIGSGIAGRGSKGAGLDI 416
Query: 412 SNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLRE 471
+NLLKP+L RGELQCIASTT DEHR F+KDKALARRFQPVL++EPSQEDAV+ILLGLRE
Sbjct: 417 ANLLKPALARGELQCIASTTLDEHRLHFDKDKALARRFQPVLVNEPSQEDAVKILLGLRE 476
Query: 472 KYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTC 531
KYE +H CK+TLE+INAAV+LSARYI+DR+LPDKAIDL+DEAGSRA +E FKRKKE+Q
Sbjct: 477 KYETYHKCKYTLESINAAVYLSARYIADRHLPDKAIDLIDEAGSRARMESFKRKKEEQCS 536
Query: 532 ILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561
ILSK PD+YWQEIR VQ MHEV +++KY
Sbjct: 537 ILSKSPDEYWQEIRAVQNMHEVALTNKVKY 566
>gi|255082568|ref|XP_002504270.1| ATP-dependent clp protease [Micromonas sp. RCC299]
gi|226519538|gb|ACO65528.1| ATP-dependent clp protease [Micromonas sp. RCC299]
Length = 1033
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 312/619 (50%), Positives = 417/619 (67%), Gaps = 24/619 (3%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKA 137
+++VFE+FTERA+KAV+ +Q+EAK+L + V +H+++GL+AE+ G+L +G+TID A
Sbjct: 102 VTAVFEKFTERAIKAVMLAQQEAKALRRPEVGVEHIVMGLVAEEAKKGGWLGTGVTIDSA 161
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
RE I + D D AA + +S +++PFS KRVFEAA+ S + G N+IAPE
Sbjct: 162 REKAKEIV----SFDKDRAARR----TSTSEVPFSRGAKRVFEAALNNSTNMGMNYIAPE 213
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVREN-SIS 256
HIAL + +DD S + + L + A RL+ E KE R N S++
Sbjct: 214 HIALAVAELDDESLVKYFEMLSTSRTFVKNEAERRLKTEKEKES-----GPAARPNTSLA 268
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
+ ++ + S L FC DLT RA +E IDP+IGR+ E++R+IQIL RR+KNNPIL
Sbjct: 269 PRQRQQQASQKDEKSPLNDFCFDLTQRARDEKIDPIIGRDEEVERVIQILARRSKNNPIL 328
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
LGE GVGKTAIAEGLA+RIV VP FL KR++SLD+GLLMAGAKERGELE+RVT LI
Sbjct: 329 LGEPGVGKTAIAEGLALRIVSGNVPEFLREKRVLSLDVGLLMAGAKERGELESRVTGLIK 388
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EIQ DV+L IDEVHTLI G G+DISN+LKP L RGELQCI +TT DEHR
Sbjct: 389 EIQDKKDVVLMIDEVHTLI-GAGAVGKGGGGGMDISNMLKPPLARGELQCIGATTVDEHR 447
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQPV++ EPS+EDA+ IL GLRE+YEAHH C+ T +A+ AAV +S+RY
Sbjct: 448 KYIEKDAALERRFQPVMVEEPSEEDAIEILFGLRERYEAHHMCEITDDALIAAVQISSRY 507
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCI---LSKPPDDYWQEIRTV-QAMHE 552
I+DR+LPDKAIDLVDEAGS A I+ + +KE++ + S + W+ ++ V +A
Sbjct: 508 IADRFLPDKAIDLVDEAGSAARIKQYMAQKERRGEVDKATSMEAMEMWRALKQVSEAKEA 567
Query: 553 VVQG-----SRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
V+G + L D + S++ V+ + A V D+I AVA++WSGI
Sbjct: 568 AVRGLLFEEATLLRDREREVKTNLSKLGVKVDELTGDGAYGGAKVTVDEIEAVAAMWSGI 627
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PVQ++T DE+ +L +++ L+ VIGQ+EAV+A+SR+++R+R GLKDPNRP A+MLF GP
Sbjct: 628 PVQRMTLDEQAILANMDQDLQGSVIGQEEAVSAVSRSLRRTRCGLKDPNRPIASMLFAGP 687
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGKTEL K LA YFGS
Sbjct: 688 TGVGKTELTKRLAEKYFGS 706
>gi|303281588|ref|XP_003060086.1| ATP-dependent clp protease [Micromonas pusilla CCMP1545]
gi|226458741|gb|EEH56038.1| ATP-dependent clp protease [Micromonas pusilla CCMP1545]
Length = 1004
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 320/655 (48%), Positives = 425/655 (64%), Gaps = 44/655 (6%)
Query: 55 SNYTSN-NNNCNPICAR---KRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFT 110
S++ S N + AR K R + +++VFE+FTERA+KAV+ +Q+EAK+L + V
Sbjct: 48 SSFASGANGTAGFVRARDPVKARGALVVTAVFEKFTERAIKAVMLAQQEAKALRRPEVGA 107
Query: 111 QHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPF-SSAAKM 169
+H+++GLIAE+ G L D+AR A +G+ +S +++
Sbjct: 108 EHIVMGLIAEEVCQEGGLPGHRHDDRAR------------------AREGQGHRASTSEV 149
Query: 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVA 229
PFS KRVFEAA+ S+S G N+IAPEH+A+ T+DD + + D + A A
Sbjct: 150 PFSRGAKRVFEAALAASQSAGMNYIAPEHVAVAAATLDDDALVAFFAAMNADRAAVNAEA 209
Query: 230 VSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGR--TRASALEQFCVDLTARASEE 287
RL+GE +EG S +G T S G+ + S L FC DLTARA E+
Sbjct: 210 ERRLKGEREREGNNRSSGPSSPAARGAGSTPGAGSGGKESSEKSPLADFCFDLTARARED 269
Query: 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSK 347
IDPVIGR+ E++R+IQIL RR+KNNPILLGE GVGKTAIAEGL+IRI + +VP FL K
Sbjct: 270 KIDPVIGRDEEVERVIQILARRSKNNPILLGEPGVGKTAIAEGLSIRIAKGDVPEFLKDK 329
Query: 348 RIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGT 407
R++SLD+GLLMAGAKERGELE+RVT L++EI++ GDV+L IDEVHT+IG+G VG+G G
Sbjct: 330 RVLSLDVGLLMAGAKERGELESRVTGLLAEIKEKGDVVLMIDEVHTMIGAGAVGKGGGGG 389
Query: 408 GLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467
G+DISNLLKP+L RG LQCI +TT DEHR EKD AL RRFQPV+I EPS+EDA IL
Sbjct: 390 GMDISNLLKPALARGGLQCIGATTVDEHRKYIEKDAALERRFQPVMIEEPSEEDATAILF 449
Query: 468 GLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELF----K 523
GLR++YEAHH T +AI AAV +S RYI+DR+LPDKAIDL+DEAGS A I+ +
Sbjct: 450 GLRDRYEAHHETTITDDAIVAAVQISNRYIADRFLPDKAIDLIDEAGSAARIKKYMASKM 509
Query: 524 RKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPS 582
R E S + W+ ++ V +A V+G L +++ + D V ++ L
Sbjct: 510 RAGEAVDGATSMEAMELWRALKQVHEAKEAAVRG--LLFEEATL-LRDREREVKKNLLNL 566
Query: 583 ASDDD-----------EPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRV 631
D D +VV DI AVA+ W+GIPVQ++T DE L +++ L+ V
Sbjct: 567 GIDVDVDGADGGQMGGAGSVVDVGDIEAVAAQWTGIPVQRMTDDEAATLATMDDSLRACV 626
Query: 632 IGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
IGQ+EAV+A++R+++R+R GLKDPNRP A+MLF GPTGVGKTEL KSLA YFGS
Sbjct: 627 IGQEEAVSAVARSLRRTRCGLKDPNRPIASMLFAGPTGVGKTELTKSLAEKYFGS 681
>gi|302836842|ref|XP_002949981.1| ClpD chaperone, Hsp100 family [Volvox carteri f. nagariensis]
gi|300264890|gb|EFJ49084.1| ClpD chaperone, Hsp100 family [Volvox carteri f. nagariensis]
Length = 972
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 296/641 (46%), Positives = 407/641 (63%), Gaps = 45/641 (7%)
Query: 72 RRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR-HPNGFLES 130
RR+ + + +VFERFTER++K V+ +Q EAKS G + V T+H+LLGL+AE+ NG+L S
Sbjct: 23 RRQAVKVQAVFERFTERSIKTVMIAQAEAKSFGHNEVNTEHILLGLVAEESLSKNGYLNS 82
Query: 131 GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRG 190
G+T ++A+ V +I+ + +P S +PFS +++FEAA +
Sbjct: 83 GVTPERAKATVEAIF------------GRKRPVSHGESIPFSREVRKMFEAATHECKRSN 130
Query: 191 YNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG----ELAKEGREPSL 246
N+I+PEHI L + + D + RVL L VDV+ L A A RL+G E AK+ + P +
Sbjct: 131 VNWISPEHILLAMLAMPDCNGKRVLHSLSVDVDGLKAEASKRLKGDTDAEQAKKKQAPLM 190
Query: 247 AKGVRE---NSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRII 303
+ S+ + A + P T E++C DL A IDPV+GRE E+ R++
Sbjct: 191 YPPLSSPLSGSLHQASGAKEGPKMT-----EEYCKDLCAEVRAGRIDPVVGREREVSRVV 245
Query: 304 QILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ-------AEVPVFLLSKRIMSLDMGL 356
QIL RRTKNNPILLGE GVGKTAIAEGLA IV A +P FL SKRI+ LD+GL
Sbjct: 246 QILARRTKNNPILLGEPGVGKTAIAEGLASAIVHRTASLDGAPLPEFLHSKRILQLDVGL 305
Query: 357 LMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK 416
L+AGAKERGELE+RVT LI+E++++G++IL IDE+HTL+G+G+VGRG G LDI+NL+K
Sbjct: 306 LIAGAKERGELESRVTKLIAEVKEAGNIILMIDEIHTLVGAGSVGRGGGGG-LDIANLVK 364
Query: 417 PSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH 476
P+L RGE Q I +TT DEHR E+D AL RRFQP+ + EP+ E + IL+GL+E+YE H
Sbjct: 365 PALARGEFQVIGATTLDEHRKYIERDAALERRFQPITVDEPTPEATLAILMGLKERYERH 424
Query: 477 HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCIL 533
H C +T EA+ AAV LS +YI+DR+LPDKAIDL+DEAGSRA I F + + QQ +
Sbjct: 425 HRCAYTEEALAAAVTLSHKYIADRFLPDKAIDLIDEAGSRARIAAFTARQTRSRQQARMA 484
Query: 534 S-----KPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTS---EIVVESSLPSASD 585
S R +HE +Q + +D D + + E + PS SD
Sbjct: 485 SLALSPGSGSGSSSYSRDHPKLHEYLQVGGRECEDDGGCHNDFALPCRELSELAGPS-SD 543
Query: 586 DDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAV 645
VVG +DI A+ S W+ IPV+++ DE+ L+ + L V+GQ++AV +I+ A+
Sbjct: 544 GSVLPVVGVEDIEAIVSAWTAIPVEKMNDDEKERLLNMRSDLGHHVVGQEDAVESIATAL 603
Query: 646 KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
R+R GLKDP RP A++LF GPTGVGKTELAK L+ Y+GS
Sbjct: 604 CRARCGLKDPRRPVASLLFVGPTGVGKTELAKVLSEQYYGS 644
>gi|123966412|ref|YP_001011493.1| ClpC [Prochlorococcus marinus str. MIT 9515]
gi|123200778|gb|ABM72386.1| ClpC [Prochlorococcus marinus str. MIT 9515]
Length = 843
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 274/624 (43%), Positives = 388/624 (62%), Gaps = 58/624 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLKSL 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDS--RIEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LG+D+ + V R+ GE A G +G T+
Sbjct: 110 LGLIREGEGVAARVLENLGIDLTKVRT-QVIRMLGETADVG--------------TGGTS 154
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ K G + + L++F +LT ASE +DPV+GR EI R+IQIL RRTKNNP+L+GE
Sbjct: 155 SNK--GNLKTATLDEFGTNLTKLASESKLDPVVGRYEEIDRVIQILGRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI E+P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 213 GVGKTAIAEGLAQRIQLGEIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKS 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 273 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV++ EPS ED + IL GLRE+YE HH K T +A+ AA HL RYISDR
Sbjct: 328 RDAALERRFQPVMVGEPSIEDTIEILKGLRERYEQHHRLKITDDALEAAAHLGDRYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYWQ---- 542
+LPDKAIDL+DEAGSR + EL + +K+++ + + D Q
Sbjct: 388 FLPDKAIDLIDEAGSRVRLINSKLPPEAKQIDKELRQVQKQKEESVRDQNFDQAGQLREK 447
Query: 543 EIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVAS 602
EI + + E++ + D +S +E D + +V +D+A + +
Sbjct: 448 EIELSEKIKELLDSKKESLDKNNSSNASETE-------DGGIDITQNPLVSEEDVAHIVA 500
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+S+A++R+RVGLK+PNRP A+
Sbjct: 501 SWTGVPVQKLTETESVKLLNMEETLHQRLIGQDEAVKAVSKAIRRARVGLKNPNRPIASF 560
Query: 663 LFCGPTGVGKTELAKSLAACYFGS 686
+F GPTGVGKTEL KSLA+ +FGS
Sbjct: 561 IFSGPTGVGKTELTKSLASYFFGS 584
>gi|78779482|ref|YP_397594.1| Clp protease ATP-binding subunit [Prochlorococcus marinus str. MIT
9312]
gi|78712981|gb|ABB50158.1| ATPase [Prochlorococcus marinus str. MIT 9312]
Length = 842
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 274/624 (43%), Positives = 390/624 (62%), Gaps = 59/624 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLKSL 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDS--RIEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ L +D+ + V R+ GE A+ G +
Sbjct: 110 LGLIREGEGVAARVLENLSIDLTKVRT-QVIRMLGETAEVG-----------------SG 151
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
A S G + + L++F +LT ASE +DPV+GR EI R++QIL RRTKNNP+L+GE
Sbjct: 152 ANSSKGNLKTATLDEFGTNLTKLASESKLDPVVGRYAEIDRVVQILGRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 212 GVGKTAIAEGLAQRIQLGDIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKS 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 272 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV++ EPS ED + IL GLRE+YE HH K T EA+ AA HL RYISDR
Sbjct: 327 RDAALERRFQPVMVGEPSIEDTIEILKGLRERYEQHHRLKITDEALEAAAHLGDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYWQ---- 542
+LPDKAIDL+DEAGSR + EL + +K+++ + + D Q
Sbjct: 387 FLPDKAIDLIDEAGSRVRLINSKLPPEAKQIDKELRQIQKQKEESVRDQNFDQAGQLREK 446
Query: 543 EIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVAS 602
EI + EV++ + + +S+ DT+ + +S L + +V +D+A + +
Sbjct: 447 EIELSAKIKEVLENKKESTTEDESSV-DTNSVKNDSKLL------QNPMVNEEDVAHIVA 499
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+SRA++R+RVGLK+PNRP A+
Sbjct: 500 SWTGVPVQKLTETESVKLLNMEETLHQRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASF 559
Query: 663 LFCGPTGVGKTELAKSLAACYFGS 686
+F GPTGVGKTEL KSLA+ +FGS
Sbjct: 560 IFSGPTGVGKTELTKSLASYFFGS 583
>gi|123968727|ref|YP_001009585.1| ClpC [Prochlorococcus marinus str. AS9601]
gi|123198837|gb|ABM70478.1| ClpC [Prochlorococcus marinus str. AS9601]
Length = 842
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 282/629 (44%), Positives = 391/629 (62%), Gaps = 69/629 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLKSL 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDS--RIEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ L +D+ + V R+ GE A+ G SG T+
Sbjct: 110 LGLIREGEGVAARVLENLNIDLTKVRT-QVIRMLGETAEVG--------------SG-TS 153
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
KS +T + L++F +LT ASE +DPV+GR +EI R++QIL RRTKNNP+L+GE
Sbjct: 154 TTKSNQKT--ATLDEFGTNLTKLASESKLDPVVGRYSEIDRVVQILGRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 212 GVGKTAIAEGLAQRIQTGDIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKS 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 272 AGNVILVIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEYRKHIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV++ EPS ED + IL GLRE+YE HH K T +A+ AA HL RYISDR
Sbjct: 327 RDAALERRFQPVMVGEPSIEDTIEILKGLRERYEQHHRLKITDDALEAAAHLGDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQ---EIRTVQAMHE----- 552
YLPDKAIDL+DEAGSR + I SK P + Q E+R VQ E
Sbjct: 387 YLPDKAIDLIDEAGSRVRL------------INSKLPPEAKQIDKELRQVQKQKEESVRD 434
Query: 553 --VVQGSRLKYDDV--VASMGDTSEIVVESSLPSASDDDEPAV-----------VGPDDI 597
Q +L+ ++ A + + E ES+ +DD +V V +D+
Sbjct: 435 QNFDQAGQLREKEIELSAKIKEVLENKKESAEEDQFNDDNKSVESDSKLYQSPLVSEEDV 494
Query: 598 AAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNR 657
A + + W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+SRA++R+RVGLK+PNR
Sbjct: 495 AHIVASWTGVPVQKLTETESVKLLNMEETLHQRLIGQDEAVKAVSRAIRRARVGLKNPNR 554
Query: 658 PTAAMLFCGPTGVGKTELAKSLAACYFGS 686
P A+ +F GPTGVGKTEL KSLA+ +FGS
Sbjct: 555 PIASFIFSGPTGVGKTELTKSLASYFFGS 583
>gi|332706083|ref|ZP_08426155.1| ATPase with chaperone activity, ATP-binding subunit [Moorea
producens 3L]
gi|332355175|gb|EGJ34643.1| ATPase with chaperone activity, ATP-binding subunit [Moorea
producens 3L]
Length = 822
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/618 (45%), Positives = 388/618 (62%), Gaps = 64/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S GRT+ L++F +LT ASE +DPV+GRE EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VTAGASQGRTKTPTLDEFGSNLTQMASEGKLDPVVGREKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANNDVPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ +VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RQASNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K + EA+ AA +LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKISDEALEAAANLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QVLKEKDD 428
Query: 556 GSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
R + D + D +EI + +S + DE +V +DIA + + W+G+P
Sbjct: 429 AVRSQDFDRAGELRDREMEIKAEIRSIAQSKKSESRGTDESPIVDEEDIAHIVASWTGVP 488
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
VQ++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 489 VQKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPT 548
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAKSLAA +FGS
Sbjct: 549 GVGKTELAKSLAAYFFGS 566
>gi|126696533|ref|YP_001091419.1| ClpC [Prochlorococcus marinus str. MIT 9301]
gi|126543576|gb|ABO17818.1| ClpC [Prochlorococcus marinus str. MIT 9301]
Length = 841
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 276/628 (43%), Positives = 387/628 (61%), Gaps = 68/628 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLKSL 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDS--RIEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ L +D+ + V R+ GE A+ G T
Sbjct: 110 LGLIREGEGVAARVLENLNIDLTKVRT-QVIRMLGETAEVG-----------------TG 151
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ G + + L++F +LT ASE +DPV+GR +EI R++QIL RRTKNNP+L+GE
Sbjct: 152 GSSNKGNLKTATLDEFGTNLTKLASESKLDPVVGRHSEIDRVVQILGRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 212 GVGKTAIAEGLAQRIQTGDIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKS 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 272 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV++ EPS ED + IL GLRE+YE HH K T +A+ AA HL RYISDR
Sbjct: 327 RDAALERRFQPVMVGEPSIEDTIEILKGLRERYEQHHRLKITDDALEAAAHLGDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQ---EIRTVQAMHE----- 552
+LPDKAIDL+DEAGSR + I SK P + Q E+R +Q E
Sbjct: 387 FLPDKAIDLIDEAGSRVRL------------INSKLPPEAKQIDRELRQIQKQKEESVRD 434
Query: 553 --VVQGSRL--KYDDVVASMGDTSEIVVESSLPSASDDDEPA----------VVGPDDIA 598
Q +L K ++ A + + + ES+ +D D A +V +D+A
Sbjct: 435 QNFDQAGQLREKEMELSAKIKEVLDNKKESTAVDQTDPDNSAKSDSKLLQSPLVSEEDVA 494
Query: 599 AVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRP 658
+ + W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+SRA++R+RVGLK+PNRP
Sbjct: 495 HIVASWTGVPVQKLTETESVKLLNMEETLHQRLIGQDEAVKAVSRAIRRARVGLKNPNRP 554
Query: 659 TAAMLFCGPTGVGKTELAKSLAACYFGS 686
A+ +F GPTGVGKTEL KSLA+ +FGS
Sbjct: 555 IASFIFSGPTGVGKTELTKSLASYFFGS 582
>gi|157413559|ref|YP_001484425.1| ClpC [Prochlorococcus marinus str. MIT 9215]
gi|157388134|gb|ABV50839.1| ClpC [Prochlorococcus marinus str. MIT 9215]
Length = 842
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 273/624 (43%), Positives = 389/624 (62%), Gaps = 59/624 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLKSL 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDS--RIEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ L +D+ + V R+ GE A+ G S AK
Sbjct: 110 LGLIREGEGVAARVLENLNIDLTKVRT-QVIRMLGETAEVGTGGSTAKS----------- 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ + L++F +LT ASE +DPV+GR +EI R++QIL RRTKNNP+L+GE
Sbjct: 158 ------NLKTATLDEFGTNLTKLASESKLDPVVGRHSEIDRVVQILGRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 212 GVGKTAIAEGLAQRIQTGDIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKS 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 272 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV++ EPS ED + IL GLRE+YE HH K T +A+ AA HL RYISDR
Sbjct: 327 RDAALERRFQPVMVGEPSIEDTIEILKGLRERYEQHHRLKITDDALEAAAHLGDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYWQ---- 542
+LPDKAIDL+DEAGSR + EL + +K+++ + + D Q
Sbjct: 387 FLPDKAIDLIDEAGSRVRLINSKLPPEAKEIDRELRQVQKQKEESVRDQNFDQAGQLREK 446
Query: 543 EIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVAS 602
E+ + EV++ + +++GD S ES ++ P +V +D+A + +
Sbjct: 447 EMELSAKIKEVLENKK------ESTVGDKSNADNESVKGDSTLLQSP-LVSEEDVAHIVA 499
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+SRA++R+RVGLK+PNRP A+
Sbjct: 500 SWTGVPVQKLTETESVKLLNMEETLHQRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASF 559
Query: 663 LFCGPTGVGKTELAKSLAACYFGS 686
+F GPTGVGKTEL KSLA+ +FGS
Sbjct: 560 IFSGPTGVGKTELTKSLASYFFGS 583
>gi|409992273|ref|ZP_11275473.1| ATPase [Arthrospira platensis str. Paraca]
gi|291567174|dbj|BAI89446.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Arthrospira
platensis NIES-39]
gi|409936864|gb|EKN78328.1| ATPase [Arthrospira platensis str. Paraca]
Length = 823
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/620 (45%), Positives = 387/620 (62%), Gaps = 67/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
AA S GRT+ L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VAAGGSSGRTKTPTLDEFGSNLTQMASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIAQNDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSCGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS + + IL GLRE+YE HH K EAI AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVPETIEILYGLRERYEQHHKLKIIDEAIEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QVLKEKDD 428
Query: 556 GSRLKYDDVVASMGDTSEIVVESSL---------PSASDDDEPAVVGPDDIAAVASLWSG 606
R + D + D E+ ++S + + +D+D+ +V +DIA + + W+G
Sbjct: 429 AVRSQDFDRAGELRD-REMEIKSQIRAIAQNKKSETRTDEDDSPMVTEEDIAQIVASWTG 487
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E+ L +R+IGQ+EAV A+SRA++R+RVGLK+PNRP A+ +F G
Sbjct: 488 IPVNKLTESESEKLLHMEDTLHQRLIGQEEAVKAVSRAIRRARVGLKNPNRPIASFIFSG 547
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTEL KSLAA +FGS
Sbjct: 548 PTGVGKTELTKSLAAYFFGS 567
>gi|33865472|ref|NP_897031.1| endopeptidase Clp ATP-binding chain C [Synechococcus sp. WH 8102]
gi|33632641|emb|CAE07453.1| endopeptidase Clp ATP-binding chain C [Synechococcus sp. WH 8102]
Length = 846
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/626 (44%), Positives = 389/626 (62%), Gaps = 60/626 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+ +SG
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVR-TQVIRMLGETAE---------------VSGG 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ G T+ L++F +LT A+E +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 152 GGGGGAKGSTKTPTLDEFGSNLTQMANEAKLDPVVGRHNEIERVIQILGRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI Q E+P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAIAEGLAQRIQQGEIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 272 KAAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV + EPS +D + IL GLRE+YE HH K T +A+ AA L RYIS
Sbjct: 327 IERDAALERRFQPVNVGEPSIDDTIEILRGLRERYEQHHRLKITDDALVAAATLGDRYIS 386
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDY 540
DR+LPDKAIDL+DEAGSR + EL +K+++ + +K +
Sbjct: 387 DRFLPDKAIDLIDEAGSRVRLLNSKLPPEAKEVDKELRGVQKQKEDAVRDQDFTKAGELR 446
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
+E+ + ++Q +R V + D +S P+A + +V +DIA +
Sbjct: 447 EKEVELRDQIRSLLQANRTDATAVAEASAD------QSDAPAAESAESSPMVNEEDIAQI 500
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+S+A++R+RVGLK+PNRP A
Sbjct: 501 VASWTGVPVQKLTESESVKLLNMEETLHQRLIGQDEAVKAVSKAIRRARVGLKNPNRPIA 560
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGS 686
+ +F GPTGVGKTEL K+LA +FGS
Sbjct: 561 SFIFSGPTGVGKTELTKALATYFFGS 586
>gi|254527057|ref|ZP_05139109.1| ATPase, AAA family [Prochlorococcus marinus str. MIT 9202]
gi|221538481|gb|EEE40934.1| ATPase, AAA family [Prochlorococcus marinus str. MIT 9202]
Length = 842
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/629 (44%), Positives = 389/629 (61%), Gaps = 69/629 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLKSL 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDS--RIEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ L +D+ + V R+ GE A+ G T
Sbjct: 110 LGLIREGEGVAARVLENLNIDLTKVRT-QVIRMLGETAEVG-----------------TG 151
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ + + L++F +LT ASE +DPV+GR +EI R++QIL RRTKNNP+L+GE
Sbjct: 152 GSSTKSNLKTATLDEFGTNLTKLASESKLDPVVGRHSEIDRVVQILGRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 212 GVGKTAIAEGLAQRIQTGDIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKS 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 272 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV++ EPS ED + IL GLRE+YE HH K T +A+ AA HL RYISDR
Sbjct: 327 RDAALERRFQPVMVGEPSIEDTIEILKGLRERYEQHHRLKITDDALEAAAHLGDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSK-PPD--DYWQEIRTVQAMHE----- 552
+LPDKAIDL+DEAGSR + I SK PP+ + +E+R VQ E
Sbjct: 387 FLPDKAIDLIDEAGSRVRL------------INSKLPPEAKEIDRELRQVQKQKEESVRD 434
Query: 553 --VVQGSRL--KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG-----------PDDI 597
Q +L K ++ A + + E ES++ S+ D +V G +D+
Sbjct: 435 QNFDQAGQLREKEMELSAKIKEVLENKKESTVGDKSNADNKSVKGDSTLLQSPLVSEEDV 494
Query: 598 AAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNR 657
A + + W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+SRA++R+RVGLK+PNR
Sbjct: 495 AHIVASWTGVPVQKLTETESVKLLNMEETLHQRLIGQDEAVKAVSRAIRRARVGLKNPNR 554
Query: 658 PTAAMLFCGPTGVGKTELAKSLAACYFGS 686
P A+ +F GPTGVGKTEL KSLA+ +FGS
Sbjct: 555 PIASFIFSGPTGVGKTELTKSLASYFFGS 583
>gi|72382499|ref|YP_291854.1| Clp protease ATP-binding subunit [Prochlorococcus marinus str.
NATL2A]
gi|72002349|gb|AAZ58151.1| ATPase [Prochlorococcus marinus str. NATL2A]
Length = 855
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/635 (43%), Positives = 394/635 (62%), Gaps = 69/635 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDS--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LGVD+ + V R+ GE A+ T
Sbjct: 110 LGLIREGEGVAARVLENLGVDLTKVRTQVV-RMLGETAEV-----------------TTG 151
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ S G + + L++F +LT ASE +DPV+GR +EI R+IQIL RRTKNNP+L+GE
Sbjct: 152 SGSSKGSAKTATLDEFGTNLTQLASESKLDPVVGRHSEIDRVIQILGRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI Q +P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 212 GVGKTAIAEGLAQRIQQGNIPDILEEKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKS 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 272 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV+I EPS +D + IL GLRE+YE HH K T EA++AA +L RYISDR
Sbjct: 327 RDAALERRFQPVMIGEPSIKDTIEILKGLRERYEQHHRLKITDEALDAAANLGDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDYWQ 542
+LPDKAIDL+DEAGSR + EL K +K ++ + ++ + +
Sbjct: 387 FLPDKAIDLIDEAGSRVRLLNSKLPPEAKEVDKELRKIQKSKEEAVRDQNFTQAGELREK 446
Query: 543 EIRTVQAMHEVVQGSRLK--------YDDVVASMGDTSEIVVESSLPSASDD---DEPAV 591
E+ + ++Q R K ++V ++S+ L + SDD +P V
Sbjct: 447 EVELRDKIRNLLQNIRQKPSTNENPNSNNVPQENNESSD-----QLITQSDDLKVSQP-V 500
Query: 592 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVG 651
V +DIA + + W+G+PVQ++T E + L+ +E+ L +R+IGQDEAV A+S+A++R+RVG
Sbjct: 501 VNEEDIAHIVASWTGVPVQKLTESESVKLLNMEDTLHQRLIGQDEAVKAVSKAIRRARVG 560
Query: 652 LKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
LK+PNRP A+ +F GPTGVGKTEL K+LAA +FGS
Sbjct: 561 LKNPNRPIASFIFSGPTGVGKTELTKALAAYFFGS 595
>gi|124026198|ref|YP_001015314.1| ClpC [Prochlorococcus marinus str. NATL1A]
gi|123961266|gb|ABM76049.1| ClpC [Prochlorococcus marinus str. NATL1A]
Length = 855
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/635 (43%), Positives = 393/635 (61%), Gaps = 69/635 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDS--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LGVD+ + V R+ GE A+ T
Sbjct: 110 LGLIREGEGVAARVLENLGVDLTKVRTQVV-RMLGETAEV-----------------TTG 151
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ S G + + L++F +LT ASE +DPV+GR +EI R+IQIL RRTKNNP+L+GE
Sbjct: 152 SGSSKGSAKTATLDEFGTNLTQLASESKLDPVVGRHSEIDRVIQILGRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI Q +P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 212 GVGKTAIAEGLAQRIQQGNIPDILEEKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKS 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 272 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV+I EPS +D + IL GLRE+YE HH K T EA++AA +L RYISDR
Sbjct: 327 RDAALERRFQPVMIGEPSIKDTIEILKGLRERYEQHHRLKITDEALDAAANLGDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDYWQ 542
+LPDKAIDL+DEAGSR + EL K +K ++ + ++ + +
Sbjct: 387 FLPDKAIDLIDEAGSRVRLLNSKLPPEAKEVDKELRKIQKSKEEAVRDQNFTQAGELREK 446
Query: 543 EIRTVQAMHEVVQGSRLK--------YDDVVASMGDTSEIVVESSLPSASDD---DEPAV 591
E+ + ++Q R K ++V S+ V+ + SDD +P V
Sbjct: 447 EVELRDKIRNLLQNIRQKPSSNENPDSNNVPQENNQASDQVI-----NQSDDLKVSQP-V 500
Query: 592 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVG 651
V +DIA + + W+G+PVQ++T E + L+ +E+ L +R+IGQDEAV A+S+A++R+RVG
Sbjct: 501 VNEEDIAHIVASWTGVPVQKLTESESVKLLNMEDTLHQRLIGQDEAVKAVSKAIRRARVG 560
Query: 652 LKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
LK+PNRP A+ +F GPTGVGKTEL K+LAA +FGS
Sbjct: 561 LKNPNRPIASFIFSGPTGVGKTELTKALAAYFFGS 595
>gi|33240557|ref|NP_875499.1| Clp protease ATP-binding subunit [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238085|gb|AAQ00152.1| ATPase with chaperone activity ATP-binding subunit [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 856
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/631 (43%), Positives = 388/631 (61%), Gaps = 60/631 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDS--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LGVD+ + V R+ GE A+
Sbjct: 110 LGLIREGEGVAARVLENLGVDLTKVRT-QVIRMLGETAEV-----------------SAG 151
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
G + + L++F +LT ASE +DPV+GR EI R+IQIL RRTKNNP+L+GE
Sbjct: 152 GGSGKGSIKTATLDEFGTNLTKLASESKLDPVVGRHDEIDRVIQILGRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 212 GVGKTAIAEGLAQRIQQGDIPDILEEKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKS 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 272 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV+I EPS ED + IL GLRE+YE HH K T EA+NAA +L RYISDR
Sbjct: 327 RDAALERRFQPVMIGEPSIEDTIEILKGLRERYEQHHRLKITDEALNAAANLGDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDYWQ 542
+LPDKAIDL+DEAGSR + EL K +KE++ + +K + +
Sbjct: 387 FLPDKAIDLIDEAGSRVRLLNSKLPPEAKQVDKELRKVQKEKEEAVRDQDFTKAGELREK 446
Query: 543 EIRTVQAMHEVVQGSRL-------KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPD 595
E+ + ++ S+ +DV D S+ + +S + P +V +
Sbjct: 447 EVELRDKIRSILDNSKQDSSNSKNDSEDVALVKNDESKNEINNSTKEEINQTMP-MVNEE 505
Query: 596 DIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDP 655
DIA + + W+G+PVQ++T E + L+ +E+ L +R+IGQDEAV ++S+A++R+RVGLK+P
Sbjct: 506 DIAHIVASWTGVPVQKLTESESVKLLNMEDTLHQRLIGQDEAVKSVSKAIRRARVGLKNP 565
Query: 656 NRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
NRP A+ +F GPTGVGKTEL K+LAA +FGS
Sbjct: 566 NRPIASFIFSGPTGVGKTELTKALAAYFFGS 596
>gi|220910059|ref|YP_002485370.1| ATPase AAA [Cyanothece sp. PCC 7425]
gi|219866670|gb|ACL47009.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 7425]
Length = 825
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 282/620 (45%), Positives = 388/620 (62%), Gaps = 66/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVR-TQVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+A S GRT+ L++F +LT A++ +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VSAGSSQGRTKTPTLDEFGSNLTQMAADGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANGDIPDILQEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEKHHKLKILDEALEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QVLKEKDD 428
Query: 556 GSRLKYDDVVASMGDTS-EIVVE--------SSLPSASDDDEPAVVGPDDIAAVASLWSG 606
R + D + D EI E + ++ D+ + VV +DIA + + W+G
Sbjct: 429 AVRAQDFDKAGELRDREMEIKAEIRALSQQKKAETTSEDEAQSPVVSEEDIAHIVASWTG 488
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV ++T E L+ +E+ L +R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F G
Sbjct: 489 VPVNKLTESESEKLLHMEDTLHQRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 548
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAK+LAA +FGS
Sbjct: 549 PTGVGKTELAKALAAYFFGS 568
>gi|376001877|ref|ZP_09779731.1| ATP-dependent Clp protease regulatory subunit [Arthrospira sp. PCC
8005]
gi|423062254|ref|ZP_17051044.1| ATPase AAA-2 [Arthrospira platensis C1]
gi|375329788|emb|CCE15484.1| ATP-dependent Clp protease regulatory subunit [Arthrospira sp. PCC
8005]
gi|406716162|gb|EKD11313.1| ATPase AAA-2 [Arthrospira platensis C1]
Length = 823
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 281/620 (45%), Positives = 386/620 (62%), Gaps = 67/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S GRT+ L++F +LT A+E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VTAGGSSGRTKTPTLDEFGSNLTQMAAEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIAQNDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSCGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS + + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVPETIEILYGLRERYEQHHKLKIIDEALEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QVLKEKDD 428
Query: 556 GSRLKYDDVVASMGDTSEIVVESSL---------PSASDDDEPAVVGPDDIAAVASLWSG 606
R + D + D E+ ++S + + +DDD+ +V +DIA + + W+G
Sbjct: 429 AVRSQDFDRAGELRD-REMEIKSQIRAIAQNKKSETRTDDDDSPMVTEEDIAQIVASWTG 487
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E+ L +R+IGQ+EAV A+SRA++R+RVGLK+PNRP A+ +F G
Sbjct: 488 IPVNKLTESESEKLLHMEDTLHQRLIGQEEAVKAVSRAIRRARVGLKNPNRPIASFIFSG 547
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTEL KSLAA +FGS
Sbjct: 548 PTGVGKTELTKSLAAYFFGS 567
>gi|427701534|ref|YP_007044756.1| chaperone ATPase [Cyanobium gracile PCC 6307]
gi|427344702|gb|AFY27415.1| ATPase with chaperone activity, ATP-binding subunit [Cyanobium
gracile PCC 6307]
Length = 849
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 278/628 (44%), Positives = 388/628 (61%), Gaps = 61/628 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T+ G T+ L++F +LT A+E +DPV+GR+ EI R+IQIL RRTKNNP+L+G
Sbjct: 149 TSGSSGKGSTKTPTLDEFGSNLTQLAAESKLDPVVGRQNEIDRVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI Q E+P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRITQGEIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS D + IL GLRE+YE HH K + EA+ AA L RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVVDTIEILKGLRERYEQHHRLKISDEALVAAATLGDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDY 540
DR+LPDKAIDL+DEAGSR + +L +KE++ + +K +
Sbjct: 384 DRFLPDKAIDLIDEAGSRVRLLNSKLPPAAKEVDKQLRGVQKEKEDAVRQQDFTKAGELR 443
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMG--DTSEIVVESSLPSASDDDEPAVVGPDDIA 598
+E+ + ++Q R D+ + G DT ++ AS++ +V +DIA
Sbjct: 444 DKEVELRDQIRTILQARR--DDEPAGNSGETDTPALLGGPVADDASEESRSPLVTEEDIA 501
Query: 599 AVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRP 658
+ + W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+SRA++R+RVGLK+PNRP
Sbjct: 502 QIVASWTGVPVQKLTESESVKLLNMEETLHQRLIGQDEAVKAVSRAIRRARVGLKNPNRP 561
Query: 659 TAAMLFCGPTGVGKTELAKSLAACYFGS 686
A+ +F GPTGVGKTEL K+LAA +FGS
Sbjct: 562 IASFIFSGPTGVGKTELTKALAAYFFGS 589
>gi|452821448|gb|EME28478.1| [pt] ATP-dependent Clp protease ATP-binding subunit ClpB [Galdieria
sulphuraria]
Length = 847
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 275/613 (44%), Positives = 384/613 (62%), Gaps = 52/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-----GITID 135
+FERFTE+A+KA++ SQ EA+ LG + V T+ +LLGL+AE NG G+T+
Sbjct: 1 MFERFTEKAIKAIMLSQEEARRLGHNFVGTEQVLLGLLAE---SNGLASKVLKLMGVTLK 57
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E A+E ++ G+N++
Sbjct: 58 DARIEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELAIEEAKFIGHNYVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL + DG A +VL+ LGVD+ L R+ ++ + E+
Sbjct: 105 TEHLLLGLLSEGDGVATKVLENLGVDLEQL----------------RQQTMDLIIEESEF 148
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
A R++ LE+F V+LT A E +DPV+GRE EI+R+IQIL RRTKNNP+
Sbjct: 149 VNANAY--GYVRSKTPTLEEFGVNLTQLAIEGKLDPVVGREKEIERVIQILGRRTKNNPV 206
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI + +VP L K++++LD+GLL+AG K RGE E R+ +I
Sbjct: 207 LIGEPGVGKTAIAEGLAQRIAKQDVPNLLEDKQVVNLDIGLLIAGTKYRGEFEERLKRII 266
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ +VIL IDEVHTLIG+G +D +N+LKP L RGELQCI +TT +E+
Sbjct: 267 DEIRAINNVILVIDEVHTLIGAGAA-----EGAIDAANILKPILARGELQCIGATTLEEY 321
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+++ EP+ E+ + IL GLR++YE HH + EA+NAA L+ +
Sbjct: 322 RKHIEKDAALERRFQPIIVGEPTVEETIEILYGLRDRYELHHKLVISDEALNAAAKLAHQ 381
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YISDR+LPDKAIDLVDEAGSR + L + K + L K + ++ + Q
Sbjct: 382 YISDRFLPDKAIDLVDEAGSR--VRLMQAKTPKIESNLDKELKEILKQKEEAIRSQDFTQ 439
Query: 556 GSRLKYDDVVASMGDTSEIV--VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ L+ ++ S+IV +S + + +P VV +DIAAV S W+GIP+ ++T
Sbjct: 440 ATNLREREIEIK----SQIVALAKSKKIESKVEKDPPVVTEEDIAAVVSSWTGIPLSKLT 495
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE L R+IGQDEAV+A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKT
Sbjct: 496 KSESEKLLNMEETLHSRIIGQDEAVSAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKT 555
Query: 674 ELAKSLAACYFGS 686
EL K+LA+ +FGS
Sbjct: 556 ELTKALASYFFGS 568
>gi|443316093|ref|ZP_21045553.1| ATPase with chaperone activity, ATP-binding subunit [Leptolyngbya
sp. PCC 6406]
gi|442784324|gb|ELR94204.1| ATPase with chaperone activity, ATP-binding subunit [Leptolyngbya
sp. PCC 6406]
Length = 823
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 282/628 (44%), Positives = 386/628 (61%), Gaps = 84/628 (13%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+A GRT+ L++F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VSAGGGQGRTKTPTLDEFGSNLTQMAGEGKLDPVVGRQNEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRISTGDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLR++YE HH + EA+NAA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVEETIEILHGLRDRYEQHHKLRIEDEALNAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPD------ 538
DR+LPDKAIDL+DEAGSR + EL + KE+ + S+ D
Sbjct: 383 DRFLPDKAIDLIDEAGSRVRLINSQLPPAAKELDKELRQLLKEKDNAVRSQDFDRAGELR 442
Query: 539 DYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIA 598
D EI+ + + QG + + +D GD S +V E +DIA
Sbjct: 443 DREMEIKA--EIRTIAQGKKAESED-----GDDSPVVTE-----------------EDIA 478
Query: 599 AVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRP 658
+ + W+G+PV ++T E L+ +E+ L +R+IGQDEAV AISRA++R+RVGLK PNRP
Sbjct: 479 HIVASWTGVPVNKLTESESEKLLHMEDTLHQRLIGQDEAVKAISRAIRRARVGLKSPNRP 538
Query: 659 TAAMLFCGPTGVGKTELAKSLAACYFGS 686
A+ +F GPTGVGKTELAKSLAA +FGS
Sbjct: 539 IASFIFSGPTGVGKTELAKSLAAYFFGS 566
>gi|78213152|ref|YP_381931.1| ATPase [Synechococcus sp. CC9605]
gi|78197611|gb|ABB35376.1| ATPase [Synechococcus sp. CC9605]
Length = 846
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 276/626 (44%), Positives = 389/626 (62%), Gaps = 60/626 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+ +S
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE---------------VSAG 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ G T+ L++F +LT A+E +DPV+GR EI R+IQIL RRTKNNP+L+G
Sbjct: 152 GGGGGAKGSTKTPTLDEFGNNLTQLATEAKLDPVVGRHNEIDRVIQILGRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAIAEGLAQRIQQGDIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 272 KSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV + EPS +D + IL GLRE+YE HH K T +A+ AA L RYIS
Sbjct: 327 IERDAALERRFQPVNVGEPSIDDTIEILRGLRERYEQHHRLKITDDALVAAATLGDRYIS 386
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDY 540
DR+LPDKAIDL+DEAGSR + EL +K+++ + +K +
Sbjct: 387 DRFLPDKAIDLIDEAGSRVRLLNSKLPPAAKEVDKELRSVQKDKEDAVRDQDFTKAGELR 446
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
+E+ + + ++Q ++ D+ A DT+ E++ A+ D +V +DIA +
Sbjct: 447 EKEVELREQIRSLLQANK---DEAKA---DTTAESGETAFTEAAASDSSPMVNEEDIAQI 500
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+G+PVQ++T E + L+ +EE L KR+IGQDEAV A+S+A++R+RVGLK+PNRP A
Sbjct: 501 VASWTGVPVQKLTESESVKLLNMEETLHKRLIGQDEAVKAVSKAIRRARVGLKNPNRPIA 560
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGS 686
+ +F GPTGVGKTEL K+LA +FGS
Sbjct: 561 SFIFSGPTGVGKTELTKALATYFFGS 586
>gi|113476064|ref|YP_722125.1| ATPase [Trichodesmium erythraeum IMS101]
gi|110167112|gb|ABG51652.1| ATPase AAA-2 [Trichodesmium erythraeum IMS101]
Length = 825
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 280/619 (45%), Positives = 384/619 (62%), Gaps = 66/619 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLTKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A GRT+ L++F +LT ASE +DPV+GR+TEI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VTAGGGGGRTKTPTLDEFGSNLTQMASEGKLDPVVGRQTEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANNDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLRE+YE HH K A+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVDETIEILYGLRERYEQHHKLKILDTALEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R++ + E +
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELRSI--LKEKDE 428
Query: 556 GSRLKYDDVVASMGD-----TSEI---VVESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
R + D + D SEI L S ++DD P V +DIA + + W+G+
Sbjct: 429 AVRSQDFDKAGELRDREMEIKSEIRSLAQNKKLDSTNEDDSPMVT-EEDIAHIVASWTGV 487
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T E L+ +E+ L +R+IGQ+EAV A+SRA++R+RVGLK+PNRP A+ +F GP
Sbjct: 488 PVNKLTESESEKLLHMEDTLHQRLIGQEEAVKAVSRAIRRARVGLKNPNRPIASFVFSGP 547
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGKTEL K+LAA +FGS
Sbjct: 548 TGVGKTELTKALAAYFFGS 566
>gi|88808913|ref|ZP_01124422.1| ATPase [Synechococcus sp. WH 7805]
gi|88786855|gb|EAR18013.1| ATPase [Synechococcus sp. WH 7805]
Length = 857
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 283/633 (44%), Positives = 393/633 (62%), Gaps = 63/633 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+ +G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE--------------VGAGG 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ + G T+ L++F +LT A E +DPV+GR EI R+IQIL RRTKNNP+L+G
Sbjct: 153 GSGSGAKGSTKTPTLDEFGNNLTQLAGEAKLDPVVGRHNEIDRVIQILGRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 213 EPGVGKTAIAEGLAQRIQQGDIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 273 KSAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ED + IL GLRE+YE HH + T EA+ AA L RYIS
Sbjct: 328 IERDAALERRFQPVMVGEPSIEDTIEILRGLRERYEQHHRLRITDEALEAAATLGDRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDY 540
DR+LPDKAIDL+DEAGSR + EL +KE++ + ++ +
Sbjct: 388 DRFLPDKAIDLIDEAGSRVRLLNSKLPPEAKEVDKELRSVQKEKEDAVREQDFTRAGELR 447
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPS-ASDDDEPAVVGP----- 594
+E+ + ++Q SR D+ A + E E +L + S+ E AV G
Sbjct: 448 DKEVELRDKIRSLLQTSR---QDIPAEQQASDENSGEPALATEGSETSESAVTGTTPVVN 504
Query: 595 -DDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLK 653
+DIA + + W+G+PVQ++T E + L+ +EE L KR+IGQDEAV A+S+A++R+RVGLK
Sbjct: 505 EEDIAQIVASWTGVPVQKLTESESVKLLNMEETLHKRLIGQDEAVKAVSKAIRRARVGLK 564
Query: 654 DPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
+PNRP A+ +F GPTGVGKTEL K+LAA +FGS
Sbjct: 565 NPNRPIASFIFSGPTGVGKTELTKALAAYFFGS 597
>gi|427714632|ref|YP_007063256.1| chaperone ATPase [Synechococcus sp. PCC 6312]
gi|427378761|gb|AFY62713.1| ATPase with chaperone activity, ATP-binding subunit [Synechococcus
sp. PCC 6312]
Length = 824
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 280/614 (45%), Positives = 388/614 (63%), Gaps = 55/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
AA S GRT+ L++F +LT A + +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VAAGSSSGRTKTPTLDEFGSNLTQMAIDGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANNDIPDILQEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ +VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RQASNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLRE+YE HH K E++ AA L+ RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVDETIEILYGLRERYEKHHKLKILDESLEAAAKLADRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHI---ELFKRKKE--QQTCILSKPPDDYWQEIRTVQAMHEV 553
DRYLPDKAIDL+DEAGSR + +L KE ++ + K DD V+A
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRLINSQLPPAAKELDKELRQVLKDKDD------AVRAQDFD 436
Query: 554 VQGS-RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
G R K D+ A + + S+ + + +D+D+ VV +DIA + S W+G+P+ ++
Sbjct: 437 KAGELRDKEMDLKAQIRNISQ---QKKSETTTDEDKSPVVTEEDIAHIVSSWTGVPLSKL 493
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ +E+ L +RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK
Sbjct: 494 TETESEKLLHMEDTLHQRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGK 553
Query: 673 TELAKSLAACYFGS 686
TEL K+LAA +FGS
Sbjct: 554 TELTKALAAYFFGS 567
>gi|427727388|ref|YP_007073625.1| chaperone ATPase [Nostoc sp. PCC 7524]
gi|427363307|gb|AFY46028.1| ATPase with chaperone activity, ATP-binding subunit [Nostoc sp. PCC
7524]
Length = 856
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 279/620 (45%), Positives = 389/620 (62%), Gaps = 64/620 (10%)
Query: 79 SSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDK 136
+++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ +
Sbjct: 32 NAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKD 91
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 92 ARIEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGT 138
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EH+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 139 EHLLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE----------------- 180
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
+A S GRT+ L++F +LT A++ +DPV+GR EI+R+IQIL RRTKNNP+L
Sbjct: 181 --VSATGSSGRTKTPTLDEFGSNLTQMATDNKLDPVVGRAKEIERVIQILGRRTKNNPVL 238
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++
Sbjct: 239 IGEPGVGKTAIAEGLASRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMD 298
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 299 EIRQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYR 353
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
E+D AL RRFQPV++ EPS ++ + IL GLR++YE HH K + EA+ AA LS RY
Sbjct: 354 KHIERDAALERRFQPVMVGEPSVDETIEILYGLRDRYEQHHKLKISDEALVAAAKLSDRY 413
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEV 553
ISDRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 414 ISDRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QILKEK 459
Query: 554 VQGSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
R + D + D +EI + +S AS D VV +DIA + + W+G
Sbjct: 460 DDAVRSQDFDRAGELRDREMEIKAEIRAIAQSKANGASGDGVEPVVTEEDIAHIVASWTG 519
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV ++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F G
Sbjct: 520 VPVNKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSG 579
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAKSLA+ +FGS
Sbjct: 580 PTGVGKTELAKSLASYFFGS 599
>gi|22297851|ref|NP_681098.1| ATP-dependent Clp protease regulatory subunit [Thermosynechococcus
elongatus BP-1]
gi|22294028|dbj|BAC07860.1| ATP-dependent Clp protease regulatory subunit [Thermosynechococcus
elongatus BP-1]
Length = 824
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 276/618 (44%), Positives = 385/618 (62%), Gaps = 63/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ R
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLRSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDA--RIEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 110 LGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE-------------------VT 149
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
A S GRT+ L++F V+LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+GE
Sbjct: 150 AGASQGRTKTPTLDEFGVNLTQLAIEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIGEP 209
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI++
Sbjct: 210 GVGKTAIAEGLAQRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEIRQ 269
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 270 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 324
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K + EA+ AA LS RYISDR
Sbjct: 325 RDAALERRFQPVMVGEPSVEETIEILYGLRERYEKHHKLKISDEALEAAAKLSDRYISDR 384
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQGS 557
YLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 385 YLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDRELR--QVLKEKDDAV 430
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG---------PDDIAAVASLWSGIP 608
R + D + D E+ +++ + + + + + +DIA + + W+G+P
Sbjct: 431 RAQNFDKAGELRD-REMELKAQIRAIAQQKKAEIANGEEETPVVTEEDIAHIVASWTGVP 489
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +EE L +RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 490 VSKLTESESEKLLHMEETLHQRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPT 549
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL K+LAA +FGS
Sbjct: 550 GVGKTELTKALAAYFFGS 567
>gi|428313889|ref|YP_007124866.1| chaperone ATPase [Microcoleus sp. PCC 7113]
gi|428255501|gb|AFZ21460.1| ATPase with chaperone activity, ATP-binding subunit [Microcoleus
sp. PCC 7113]
Length = 822
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 281/618 (45%), Positives = 381/618 (61%), Gaps = 64/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLTKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ S GRT+ L++F +LT A E +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VTSGASQGRTKTPTLDEFGSNLTQMAGEGKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANNDVPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K A+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDSALEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDLVDEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRYLPDKAIDLVDEAGSRVRL------------INSQLPPAAKELDKELR--QVLKEKDD 428
Query: 556 GSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
R + D + D +EI + +S DD VV +DIA + + W+G+P
Sbjct: 429 AVRSQDFDRAGELRDREMEIKAEIRAIAQSKKTDERSDDPGPVVDEEDIAQIVASWTGVP 488
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E+ L +R+IGQ+EAV A+SRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 489 VNKLTESESEKLLHMEDTLHQRLIGQEEAVKAVSRAIRRARVGLKNPNRPIASFIFSGPT 548
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAKSLA+ +FGS
Sbjct: 549 GVGKTELAKSLASYFFGS 566
>gi|33861644|ref|NP_893205.1| ClpC [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634221|emb|CAE19547.1| ClpC [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 842
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 274/629 (43%), Positives = 390/629 (62%), Gaps = 69/629 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLKSL 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDS--RIEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LG+D+ + V R+ GE A+ G SG ++
Sbjct: 110 LGLIREGEGVAARVLENLGIDLTKVRT-QVIRMLGETAEVG--------------SGGSS 154
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ G + + L++F +LT ASE +DPV+GR EI R+IQIL RRTKNNP+L+GE
Sbjct: 155 ---NKGNLKTATLDEFGTNLTKLASESKLDPVVGRYAEIDRVIQILGRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI E+P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 212 GVGKTAIAEGLAQRIQLGEIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKS 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 272 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV++ EPS D + IL GLRE+YE HH K T A+ AA HL RYISDR
Sbjct: 327 RDAALERRFQPVMVGEPSIADTIEILKGLRERYEQHHRLKITDNALEAAAHLGDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQ---EIRTVQAMHE----- 552
+LPDKAIDL+DEAGSR + I SK P + Q E+R VQ E
Sbjct: 387 FLPDKAIDLIDEAGSRVRL------------INSKLPPEAKQIDKELRQVQKQKEESVRD 434
Query: 553 -------VVQGSRL----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDI 597
V++ + K +++ + ++SE S+ ++++ + P +D+
Sbjct: 435 QNFDQAGVLREKEIELSAKIKELLENKKESSEKNEISNANETTENNSTIIHDPLVSEEDV 494
Query: 598 AAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNR 657
A + + W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+S+A++R+RVGL++PNR
Sbjct: 495 AHIVASWTGVPVQKLTETESVKLLNMEETLHQRLIGQDEAVKAVSKAIRRARVGLQNPNR 554
Query: 658 PTAAMLFCGPTGVGKTELAKSLAACYFGS 686
P A+ +F GPTGVGKTEL KSLA+ +FGS
Sbjct: 555 PIASFIFSGPTGVGKTELTKSLASYFFGS 583
>gi|87124752|ref|ZP_01080600.1| endopeptidase Clp ATP-binding chain C [Synechococcus sp. RS9917]
gi|86167631|gb|EAQ68890.1| endopeptidase Clp ATP-binding chain C [Synechococcus sp. RS9917]
Length = 860
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 283/639 (44%), Positives = 393/639 (61%), Gaps = 74/639 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+ +
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVR-TQVIRMLGETAE---------------VGAG 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S G T+ L++F +LT ASE +DPV+GR+ EI R+IQIL RRTKNNP+L+G
Sbjct: 152 GGGGGSKGSTKTPTLDEFGSNLTQLASEAKLDPVVGRQNEIDRVIQILGRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAIAEGLAQRIQQGDIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 272 KAAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ D + IL GLRE+YE HH K T EA+ AA L RYIS
Sbjct: 327 IERDAALERRFQPVMVGEPTITDTIEILRGLRERYEQHHRLKITDEALEAAATLGDRYIS 386
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDY 540
DR+LPDKAIDL+DEAGSR + EL + +KE++ + ++ +
Sbjct: 387 DRFLPDKAIDLIDEAGSRVRLLNSKLPPAAKEVDKELRQVQKEKENAVREQDFTRAGELR 446
Query: 541 WQEIRTVQAMHEVVQGSRLK---YDDVVASMGD----------TSEIVVESSLPSASDDD 587
+E+ + + ++Q +R DD AS D T+ VES L +
Sbjct: 447 DKEVELREQIRTLLQSNRSDSPASDDSPASNDDSGFTPAATDATTSQAVESELTT----- 501
Query: 588 EPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKR 647
VVG +DIA + + W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+S+A++R
Sbjct: 502 --PVVGEEDIAQIVASWTGVPVQKLTESESVKLLNMEETLHQRLIGQDEAVKAVSKAIRR 559
Query: 648 SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
+RVGLK+PNRP A+ +F GPTGVGKTEL K+LA +FGS
Sbjct: 560 ARVGLKNPNRPIASFIFSGPTGVGKTELTKALATYFFGS 598
>gi|428778441|ref|YP_007170227.1| chaperone ATPase [Dactylococcopsis salina PCC 8305]
gi|428692720|gb|AFZ48870.1| ATPase with chaperone activity, ATP-binding subunit
[Dactylococcopsis salina PCC 8305]
Length = 823
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 282/616 (45%), Positives = 389/616 (63%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E S G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVSSGG- 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
GRT+ L++F +LT A++ +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 153 -----GQGRTKTPTLDEFGSNLTQLAADSKLDPVVGRQNEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L +KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIGNEDVPDILENKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ V IL GLR++YE HH + T EA++AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVEETVEILYGLRDRYEQHHKLRITDEALDAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR LPDKAIDL+DEAGSR + L + QE+R Q + + R
Sbjct: 383 DRQLPDKAIDLIDEAGSRVRL---------LNSQLPPAAKELDQELR--QVLKQKDDAVR 431
Query: 559 LKYDDVVASMGD-----TSEIVVESSLPSA--SDDDEPA-VVGPDDIAAVASLWSGIPVQ 610
+ D + D EI +S +A + +D+P +VG ++IA + S W+G+PV
Sbjct: 432 SQDFDRAGELRDREMEIKGEIRALASAKTAESNKEDQPGPIVGVEEIAHIVSSWTGVPVS 491
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
+IT E L+ LEE L +R+IGQ+EAV ++SRA++R+RVGLK+PNRP A+ +F GPTGV
Sbjct: 492 KITETESQKLLHLEETLHERLIGQEEAVKSVSRAIRRARVGLKNPNRPIASFIFSGPTGV 551
Query: 671 GKTELAKSLAACYFGS 686
GKTEL KSLA+ +FGS
Sbjct: 552 GKTELTKSLASYFFGS 567
>gi|254416553|ref|ZP_05030305.1| ATPase, AAA family [Coleofasciculus chthonoplastes PCC 7420]
gi|196176757|gb|EDX71769.1| ATPase, AAA family [Coleofasciculus chthonoplastes PCC 7420]
Length = 827
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 268/614 (43%), Positives = 399/614 (64%), Gaps = 51/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL--ESGITIDKAR 138
+FE FT+RA+K+++ +Q EA+ LG ++V T+ +LLGL+ E + E +T++ R
Sbjct: 1 MFEHFTDRAIKSIMLAQEEARRLGHNLVGTEQILLGLLREGTSVAAIVLKEMDVTLESTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I +G F A ++PF+ KR+FE + + +R G+N+I PEH
Sbjct: 61 KVVEKII------------GRGSGFVPA-EIPFTPKAKRLFEQSFKEARQLGHNYIGPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ L + D AG+VL+ LGV+ + A + + GE+A + A+G S+ G+
Sbjct: 108 LLLAILQDTDSVAGKVLQSLGVNPS-TARTKLIQAIGEVAA----AATARGPG-TSMMGR 161
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T ++++ LE+F +LT ASE +DPV+GR EI+RIIQIL RRTKNNP+LLG
Sbjct: 162 T--------SKSATLEEFGRNLTQLASEGKLDPVVGRVKEIERIIQILGRRTKNNPVLLG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++VP L +K+++SLD+G L++G + RG+ E R+ +++E+
Sbjct: 214 EPGVGKTAIAEGLAQRISDSQVPELLENKQVISLDIGSLISGTRFRGDFEERIKNIMAEV 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++IL IDE+HTL+G+G + GLD +N+LKP+L RGELQC+ +TT DE+R
Sbjct: 274 REAGNIILVIDEIHTLVGAGAL-----EGGLDAANILKPALARGELQCVGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+++ EPS E+ + IL GLR+ YE HH + + A++AA LS RYIS
Sbjct: 329 IERDAALERRFQPIMVGEPSVEETIEILQGLRDAYEQHHRVEISDHALDAAAKLSDRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR H+ C S D +++R Q E + R
Sbjct: 389 DRFLPDKAIDLIDEAGSRVHL---------IHCQPSPATRDIKRQMR--QVTKEKEEAVR 437
Query: 559 LKYDDVVASMGDTS---EIVVESSLPSASDDDEPA---VVGPDDIAAVASLWSGIPVQQI 612
L+ + A + D E +++ L + +D+D P +V +DIA + S W+G+PV ++
Sbjct: 438 LQDFEKAAQLRDREQELETQLQAILQAETDEDTPVQTPLVNEEDIAHIVSSWTGVPVNKL 497
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E LL+ +E+ L +R+IGQ+EAV A+S+A++R+RVGLKDPNRP A+ +F GPTGVGK
Sbjct: 498 TESESALLLHIEDTLHQRLIGQEEAVTAVSKAIRRARVGLKDPNRPIASFIFSGPTGVGK 557
Query: 673 TELAKSLAACYFGS 686
TELAK+LAA +FGS
Sbjct: 558 TELAKALAAYFFGS 571
>gi|428203900|ref|YP_007082489.1| chaperone ATPase [Pleurocapsa sp. PCC 7327]
gi|427981332|gb|AFY78932.1| ATPase with chaperone activity, ATP-binding subunit [Pleurocapsa
sp. PCC 7327]
Length = 821
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 279/617 (45%), Positives = 386/617 (62%), Gaps = 63/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+ P
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAEVSTTPG------------- 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ GRT+ L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 -----AQGRTKTPTLDEFGSNLTQMASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDVPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ E+ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPTVEETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + +
Sbjct: 384 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QILKQKDD 429
Query: 556 GSRLKYDDVVASMGD-----TSEI-VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
R + D + D S+I + SS + + DEP VV ++IA + + W+G+PV
Sbjct: 430 AVRAQDFDRAGELRDREMEIKSQIRAIASSKKNEGEGDEP-VVTAEEIANIVASWTGVPV 488
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTG
Sbjct: 489 NKLTETESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTG 548
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL K+LAA +FGS
Sbjct: 549 VGKTELTKALAAYFFGS 565
>gi|159903639|ref|YP_001550983.1| ClpC [Prochlorococcus marinus str. MIT 9211]
gi|159888815|gb|ABX09029.1| ClpC [Prochlorococcus marinus str. MIT 9211]
Length = 859
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 277/642 (43%), Positives = 392/642 (61%), Gaps = 79/642 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLKSV 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDS--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LGVD+ + V R+ GE A+ ++
Sbjct: 110 LGLIREGEGVAARVLENLGVDLTKVRT-QVIRMLGETAE---------------VTSGGG 153
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
G + + L++F +LT ASE +DPV+GR EI R+IQIL RRTKNNP+L+GE
Sbjct: 154 GGGGKGSLKTATLDEFGTNLTKLASESKLDPVVGRYEEIDRVIQILGRRTKNNPVLIGEP 213
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 214 GVGKTAIAEGLAQRIQQGDIPDILEEKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKS 273
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 274 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 328
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV+I EPS ED + IL GLRE+YE HH K T +A+ AA +L RYISDR
Sbjct: 329 RDAALERRFQPVMIGEPSIEDTIEILKGLRERYEQHHRLKITDQALEAAANLGDRYISDR 388
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE------ 552
+LPDKAIDL+DEAGSR + L K PP+ + +++R VQ E
Sbjct: 389 FLPDKAIDLIDEAGSR--VRLLNSK---------LPPEAKEVDKQLRKVQKEKEEAVRDQ 437
Query: 553 -VVQGSRLKYDDV-----VASMGDTSEIVV------ESSLPSASDDDEP----------- 589
+ L+ +V +AS+ +T++ + S P AS +D+
Sbjct: 438 NFTEAGELREKEVNLKNQIASILNTTKDKTTLNEGEKDSQPDASAEDKKDNKENISQEIK 497
Query: 590 -----AVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRA 644
+V +DIA + + W+G+PVQ++T E + L+ +E+ L +R+IGQDEAV A+S+A
Sbjct: 498 GVNRSPIVNEEDIAHIVASWTGVPVQKLTESESVKLLNMEDTLHQRLIGQDEAVKAVSKA 557
Query: 645 VKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
++R+RVGLK+PNRP A+ +F GPTGVGKTEL K+LAA +FGS
Sbjct: 558 IRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALAAYFFGS 599
>gi|186686024|ref|YP_001869220.1| ATPase [Nostoc punctiforme PCC 73102]
gi|186468476|gb|ACC84277.1| ATPase AAA-2 domain protein [Nostoc punctiforme PCC 73102]
Length = 822
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 283/618 (45%), Positives = 385/618 (62%), Gaps = 64/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E S G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVSPGG- 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S GRT+ L++F +LT A + +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 153 -----SSGRTKTPTLDEFGSNLTQMAIDNKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLASRIATKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ ++ + IL GLRE+YE HH K + EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPTVDETIEILYGLRERYEQHHKLKISDEALVAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDLVDEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRYLPDKAIDLVDEAGSRVRL------------INSQLPPAAKELDKELR--QILKEKDD 428
Query: 556 GSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
R + D + D +EI + +S + + E VV +DIA + + W+G+P
Sbjct: 429 AVRSQDFDKAGELRDREMEIKAEIRAIAQSKTNATGTEGEEPVVTEEDIAHIVASWTGVP 488
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E+ L +R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 489 VNKLTESESEKLLHMEDTLHQRLIGQDEAVRAVSRAIRRARVGLKNPNRPIASFVFSGPT 548
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAKSLAA +FGS
Sbjct: 549 GVGKTELAKSLAAYFFGS 566
>gi|119487029|ref|ZP_01620901.1| ATP-dependent Clp protease regulatory subunit [Lyngbya sp. PCC
8106]
gi|119455958|gb|EAW37092.1| ATP-dependent Clp protease regulatory subunit [Lyngbya sp. PCC
8106]
Length = 825
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 277/626 (44%), Positives = 381/626 (60%), Gaps = 79/626 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S RT+ L++F +LT A+E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VTAGASGSRTKTPTLDEFGSNLTQMAAEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIAQNDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS + V IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVSETVEILYGLRERYEQHHKLKIMDEALEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYWQ-- 542
DRYLPDKAIDL+DEAGSR + EL + KE+ + S+ D +
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRLINSQLPPAAKELDKELRQVLKEKDDSVRSQDFDRAGELR 442
Query: 543 --EIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
E++ + E+ Q + S + ++DD P V +DIA +
Sbjct: 443 DREMKIKSQIREIAQ--------------------TKKSETNTTEDDSPMVT-EEDIAHI 481
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+GIPV ++T E L+ +E+ L +R+IGQ+EAV A+SRA++R+RVGLK+PNRP A
Sbjct: 482 VASWTGIPVNKLTESESEKLLHMEDTLHQRLIGQEEAVKAVSRAIRRARVGLKNPNRPIA 541
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGS 686
+ +F GPTGVGKTEL K+LA +FGS
Sbjct: 542 SFIFSGPTGVGKTELTKALATYFFGS 567
>gi|307106567|gb|EFN54812.1| hypothetical protein CHLNCDRAFT_58067 [Chlorella variabilis]
Length = 1306
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 294/624 (47%), Positives = 395/624 (63%), Gaps = 41/624 (6%)
Query: 73 RKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGI 132
R + +S++FE+FTER++K+V+ +Q EA+ L V T+H+LLGLIAED GFL SGI
Sbjct: 660 RGPLRVSALFEKFTERSIKSVMLAQEEARRLLASEVGTEHILLGLIAEDTGKAGFLSSGI 719
Query: 133 TIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYN 192
TI++AR V ++ + D +PFS K++FE A+ SR +
Sbjct: 720 TIERARADVENVIGRGLREPPKD-------------LPFSREAKKIFETALMESRRMSMS 766
Query: 193 FIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRE 252
FI PEHI L + +V D ++ RV + + D + L A A+ +L+GE EG+ +A
Sbjct: 767 FITPEHILLAVLSVGDATSRRVFEGMAADTDRLKAEAMRKLKGEAEGEGQRRKVAS---- 822
Query: 253 NSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKN 312
T+ K G ASAL +FC DL A + DPVIGR+ E+ RI QIL R+ KN
Sbjct: 823 ------TSDRKKEG---ASALGEFCRDLCKEAESQRTDPVIGRQKEVLRITQILARKKKN 873
Query: 313 NPILLGESGVGKTAIAEGLAIRIVQ------AEVPVFLLSKRIMSLDMGLLMAGAKERGE 366
NPILLGE GVGKTAIAEGLA IV + +P FL KR+M LD+GLL+AGAKERGE
Sbjct: 874 NPILLGEPGVGKTAIAEGLARAIVTRTNADGSALPAFLAGKRVMQLDVGLLIAGAKERGE 933
Query: 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQ 425
LE RVT L+ E + G++IL IDEVHTL+G+G VGRG G G LDISNLLKP+L RGELQ
Sbjct: 934 LELRVTKLLQECKSEGNIILMIDEVHTLVGAGAVGRGGGGGGGLDISNLLKPALARGELQ 993
Query: 426 CIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA 485
CI +TT DEHR E+D AL RRFQPV + EPS+ +A+ IL GL+++YE HH ++ +A
Sbjct: 994 CIGATTLDEHRKHIERDAALERRFQPVFVDEPSEVEALAILEGLQDRYERHHRVVYSSDA 1053
Query: 486 INAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR 545
+ AAV LS+RYI+DRYLPDKAIDL+DEAGSR I + +K ++ + E+
Sbjct: 1054 LEAAVSLSSRYITDRYLPDKAIDLLDEAGSRVRIAAYNARKAGAGRDTAEAAATSYLELE 1113
Query: 546 TVQAMH-EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA--VVGPDDIAAVAS 602
V A E VQ L +++ A++ E+ +++ L S + P VV I V S
Sbjct: 1114 QVVATKAEAVQD--LLFEE--AALLRQRELELKARL-SGVPEAAPVVPVVEAAHIEQVVS 1168
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
W+G+PV+++ D+R L+ L L+ RVIGQD+A + +RA+ R+ GLK+P+RP A +
Sbjct: 1169 AWTGVPVERMCQDDRDRLLTLGGVLQSRVIGQDDACDSTARAIMRASSGLKNPDRPIATL 1228
Query: 663 LFCGPTGVGKTELAKSLAACYFGS 686
LF GPTGVGKTEL K LA YFGS
Sbjct: 1229 LFSGPTGVGKTELTKRLADHYFGS 1252
>gi|254431180|ref|ZP_05044883.1| ATPase, AAA family [Cyanobium sp. PCC 7001]
gi|197625633|gb|EDY38192.1| ATPase, AAA family [Cyanobium sp. PCC 7001]
Length = 843
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 280/627 (44%), Positives = 392/627 (62%), Gaps = 65/627 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVR-TQVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A G T+ L++F +LT +A++ +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 149 AAGGGGKGSTKTPTLDEFGSNLTQQAADGKLDPVVGRQHEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRINSGDVPDILEEKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RGAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ED + IL GL+E+YE HH K EA+ AA L RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVEDTIEILRGLKERYEEHHRLKIADEALIAAATLGDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDY 540
DR+LPDKAIDL+DEAGSR + +L +K+++ + +K +
Sbjct: 384 DRFLPDKAIDLIDEAGSRVRLMNSKLPPAAKEVDKQLRAVQKQKEEAVREQDFTKAGELR 443
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDD-DEPAVVGPDDIAA 599
+E+ + + ++Q + D+ A T+E E+ P A+DD D +V +DIA
Sbjct: 444 DREVELREQIRTILQARK---DEEPA----TAEASGETPAPVATDDADRSPMVSEEDIAH 496
Query: 600 VASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPT 659
+ + W+G+PVQ++T E L+ +EE L +R+IGQDEAV A+SRA++R+RVGLK+PNRP
Sbjct: 497 IVASWTGVPVQKLTESESAKLLNMEETLHQRLIGQDEAVKAVSRAIRRARVGLKNPNRPI 556
Query: 660 AAMLFCGPTGVGKTELAKSLAACYFGS 686
A+ +F GPTGVGKTEL KSLAA +FGS
Sbjct: 557 ASFIFSGPTGVGKTELTKSLAAYFFGS 583
>gi|17230491|ref|NP_487039.1| endopeptidase Clp ATP-binding chain [Nostoc sp. PCC 7120]
gi|17132093|dbj|BAB74698.1| endopeptidase Clp ATP-binding chain [Nostoc sp. PCC 7120]
Length = 839
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 277/617 (44%), Positives = 391/617 (63%), Gaps = 58/617 (9%)
Query: 79 SSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDK 136
+++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ +
Sbjct: 15 NAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKD 74
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 75 ARIEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGT 121
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EH+ LGL +G A RVL+ LGVD++ + V R+ GE A E S +
Sbjct: 122 EHLLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVSAT 167
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
G++ GRT+ L++F +LT A++ +DPV+GR EI+R+IQIL RRTKNNP+L
Sbjct: 168 GQS------GRTKTPTLDEFGSNLTQMATDNKLDPVVGRAKEIERVIQILGRRTKNNPVL 221
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++
Sbjct: 222 IGEPGVGKTAIAEGLASRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMD 281
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+++G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 282 EIRQAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYR 336
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
E+D AL RRFQPV++ EPS ++ + IL GLR++YE HH K + EA+ AA LS RY
Sbjct: 337 KHIERDAALERRFQPVMVGEPSVDETIEILYGLRDRYEQHHKLKISDEALVAAAKLSDRY 396
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQG 556
ISDRYLPDKAIDLVDEAGSR + L + +E+R Q + E
Sbjct: 397 ISDRYLPDKAIDLVDEAGSRVRL---------MNSQLPPAAKELDKELR--QILKEKDDA 445
Query: 557 SRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
R + D + D +EI + +S ++ + + VV +DIA + + W+G+PV
Sbjct: 446 VRSQDFDRAGELRDREMEIKAEIRAIAQSKTNASGTEGQEPVVTEEDIAHIVASWTGVPV 505
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTG
Sbjct: 506 NKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPTG 565
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELAKSLA+ +FGS
Sbjct: 566 VGKTELAKSLASYFFGS 582
>gi|443476197|ref|ZP_21066115.1| ATPase AAA-2 domain protein [Pseudanabaena biceps PCC 7429]
gi|443018866|gb|ELS33048.1| ATPase AAA-2 domain protein [Pseudanabaena biceps PCC 7429]
Length = 829
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 279/614 (45%), Positives = 386/614 (62%), Gaps = 54/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E S G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA----EVSAGGG--------- 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S GRT+ L++F +LT A + +DPV+GRE EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 -----SSGRTKTPTLDEFGSNLTQLAQDGKLDPVVGREKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRISNSDIPDILQEKRVVTLDIGLLVAGTKYRGEFEERLKKIMEEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RTAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL+GLR++YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVEETIEILIGLRQRYEEHHKLKIDDEALVAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHI---ELFKRKKE--QQTCILSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAIDL+DEAGSR + +L KE ++ + K DD ++ +
Sbjct: 384 DRFLPDKAIDLIDEAGSRVRLINSQLPPAAKELDKELRLTLKEKDDAVRK-------QDF 436
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAV-VGPDDIAAVASLWSGIPVQQI 612
+ + L+ ++ + + ++ A +D P + V +DIA + S W+G+PV +I
Sbjct: 437 DKAAELRDKEI--DLKQQIRALSQTKKAEAPTEDAPEIRVTEEDIAYIVSSWTGVPVLKI 494
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E + L+ +EE L RVIGQDEAV AISRA++R+RVGLK PNRP A+ +F GPTGVGK
Sbjct: 495 TESESVKLMQMEETLHSRVIGQDEAVKAISRAIRRARVGLKSPNRPIASFIFSGPTGVGK 554
Query: 673 TELAKSLAACYFGS 686
TEL K+LA+ +FGS
Sbjct: 555 TELTKALASYFFGS 568
>gi|428303861|ref|YP_007140686.1| ATPase [Crinalium epipsammum PCC 9333]
gi|428245396|gb|AFZ11176.1| ATPase AAA-2 domain protein [Crinalium epipsammum PCC 9333]
Length = 826
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 276/622 (44%), Positives = 387/622 (62%), Gaps = 70/622 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+ G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAEVG----------------- 149
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S GRT+ L++F +LT A++ +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 150 -AGASSQGRTKTPTLDEFGSNLTQMAADGKLDPVVGRSKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANNDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ ++ + IL GLRE+YE HH K + A+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPTVDETIEILHGLRERYEQHHKLKISDLALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYWQEI 544
DR+LPDKAIDLVDEAGSR + EL K KE+ + S+ D +
Sbjct: 384 DRFLPDKAIDLVDEAGSRVRLINSQLPAAAKELDKELRKVLKEKDEAVRSQDFDRAGE-- 441
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW 604
++ ++ + S+ T + S P +SD+ P VV +DIA + + W
Sbjct: 442 ---------LRDREMEIKAEIRSIAQT-----KKSDPKSSDEASP-VVTEEDIAQIVASW 486
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+G+PV ++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F
Sbjct: 487 TGVPVNKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIF 546
Query: 665 CGPTGVGKTELAKSLAACYFGS 686
GPTGVGKTELAKSLA+ +FGS
Sbjct: 547 SGPTGVGKTELAKSLASYFFGS 568
>gi|443323335|ref|ZP_21052342.1| ATPase with chaperone activity, ATP-binding subunit [Gloeocapsa sp.
PCC 73106]
gi|442786899|gb|ELR96625.1| ATPase with chaperone activity, ATP-binding subunit [Gloeocapsa sp.
PCC 73106]
Length = 820
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 271/613 (44%), Positives = 379/613 (61%), Gaps = 55/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 TEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A + GR + L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 149 AAGSTNQGRNKTPTLDEFGSNLTQMASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+V+L IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVVLVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ + + IL GLRE+YE HH EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPTVAETIEILYGLRERYEQHHKLSILDEALEAAAKLSHRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAGSR + L + +E+R Q + E R
Sbjct: 384 DRYLPDKAIDLIDEAGSRVRL---------LNSQLPPAAKELDRELR--QILKEKDDAVR 432
Query: 559 LKYDDVVASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ D+ M D ++I +S D+E VV ++IA + + W+G+PV ++T
Sbjct: 433 AQNFDLAGEMRDREMEIKAQIRAIASTKKTESDNENPVVDAEEIAHIVASWTGVPVNKLT 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKT
Sbjct: 493 ESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKT 552
Query: 674 ELAKSLAACYFGS 686
EL K+LAA +FGS
Sbjct: 553 ELTKALAAYFFGS 565
>gi|124022698|ref|YP_001017005.1| protein ClpC [Prochlorococcus marinus str. MIT 9303]
gi|123962984|gb|ABM77740.1| ClpC [Prochlorococcus marinus str. MIT 9303]
Length = 859
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 276/636 (43%), Positives = 390/636 (61%), Gaps = 67/636 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 SVNLKDA--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LGVD+ + V R+ GE A+ + G S KTA
Sbjct: 110 LGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE------VTAGGGGGKGSTKTA 162
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L ++F +LT A+E +DPV+GR+ EI R+IQIL RRTKNNP+L+GE
Sbjct: 163 TL-----------DEFGSNLTQLANESKLDPVVGRQNEIDRVIQILGRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 212 GVGKTAIAEGLAQRIQQGDIPDILEEKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKS 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 272 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV++ EPS + + IL GLRE+YE HH K T EA++AA +L RYISDR
Sbjct: 327 RDAALERRFQPVMVGEPSIAETIEILQGLRERYEQHHRLKITDEALDAAANLGDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDYWQ 542
+LPDKAIDL+DEAGSR + EL K +KE++ + +K + +
Sbjct: 387 FLPDKAIDLIDEAGSRVRLLNSKLPPAAKEVDKELRKVQKEKEDAVRDQDFAKAGELREK 446
Query: 543 EIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP-------- 594
E+ + + ++Q SR D S +E V SS + + E P
Sbjct: 447 EVELREKIRTLLQSSR---QDSEESPPAEAENAVRSSDETPTPQPEKDTTAPSIPPLTTP 503
Query: 595 ----DDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRV 650
+DIA + + W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+S+A++R+RV
Sbjct: 504 LVTEEDIANIVAAWTGVPVQKLTESESVKLLNMEETLHQRLIGQDEAVKAVSKAIRRARV 563
Query: 651 GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
GLK+PNRP A+ +F GPTGVGKTEL K+LA +FGS
Sbjct: 564 GLKNPNRPIASFIFSGPTGVGKTELTKALATYFFGS 599
>gi|75907133|ref|YP_321429.1| UvrB/UvrC protein [Anabaena variabilis ATCC 29413]
gi|75700858|gb|ABA20534.1| UvrB/UvrC protein [Anabaena variabilis ATCC 29413]
Length = 823
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 277/615 (45%), Positives = 389/615 (63%), Gaps = 58/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E S +G+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVSATGQ 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ GRT+ L++F +LT A++ +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 S------GRTKTPTLDEFGSNLTQMATDNKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLASRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLR++YE HH K + EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVDETIEILYGLRDRYEQHHKLKISDEALVAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDLVDEAGSR + L + +E+R Q + E R
Sbjct: 383 DRYLPDKAIDLVDEAGSRVRL---------MNSQLPPAAKELDKELR--QILKEKDDAVR 431
Query: 559 LKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ D + D +EI + +S ++ + + VV +DIA + + W+G+PV +
Sbjct: 432 SQDFDRAGELRDREMEIKAEIRAIAQSKTNASGTEGQEPVVTEEDIAHIVASWTGVPVNK 491
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVG
Sbjct: 492 LTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPTGVG 551
Query: 672 KTELAKSLAACYFGS 686
KTELAKSLA+ +FGS
Sbjct: 552 KTELAKSLASYFFGS 566
>gi|427717814|ref|YP_007065808.1| ATPase [Calothrix sp. PCC 7507]
gi|427350250|gb|AFY32974.1| ATPase AAA-2 domain protein [Calothrix sp. PCC 7507]
Length = 822
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 280/618 (45%), Positives = 388/618 (62%), Gaps = 64/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E S +G+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVSATGQ 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ GRT+ L++F +LT A++ +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 S------GRTKTPTLDEFGSNLTQMATDNKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLASRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ ++ + IL GLRE+YE HH K + EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPTVDETIEILHGLRERYEQHHKLKISDEALIAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QILKEKDD 428
Query: 556 GSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
R + D + D +EI + +S AS D VV +DIA + + W+G+P
Sbjct: 429 AVRSQDFDKAGELRDREMEIKAEIRAIAQSKTNGASGDGVEPVVTEEDIAHIVASWTGVP 488
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 489 VNKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPT 548
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAKSLA+ +FGS
Sbjct: 549 GVGKTELAKSLASYFFGS 566
>gi|428223959|ref|YP_007108056.1| ATPase [Geitlerinema sp. PCC 7407]
gi|427983860|gb|AFY65004.1| ATPase AAA-2 domain protein [Geitlerinema sp. PCC 7407]
Length = 822
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/620 (45%), Positives = 390/620 (62%), Gaps = 68/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E S G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVSTGG- 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S GRT+ L++F +LT A+E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 153 -----SQGRTKTPTLDEFGSNLTQMAAEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI A+VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANADVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLR++YE HH K + EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVQETIEILHGLRDRYEQHHKLKISDEALEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E +
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDRELR--QVLKEKDE 428
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS---------ASDDDEPAVVGPDDIAAVASLWSG 606
R + D + D E+ +++ + S + +D P V +DIA + + W+G
Sbjct: 429 AVRSQDFDRAGELRD-REMEIKAEIRSIAQNRKNEGGTTEDSPFVT-EEDIAQIVASWTG 486
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV ++T E L+ +E+ L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F G
Sbjct: 487 VPVNKLTESESEKLLHMEDTLHNRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASFIFSG 546
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTEL K+LA+ +FGS
Sbjct: 547 PTGVGKTELTKALASYFFGS 566
>gi|411117307|ref|ZP_11389794.1| ATPase with chaperone activity, ATP-binding subunit
[Oscillatoriales cyanobacterium JSC-12]
gi|410713410|gb|EKQ70911.1| ATPase with chaperone activity, ATP-binding subunit
[Oscillatoriales cyanobacterium JSC-12]
Length = 822
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 277/617 (44%), Positives = 385/617 (62%), Gaps = 63/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ S GRT+ L++F +LT A+E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VTSGGSQGRTKTPTLDEFGSNLTQLAAEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANDDVPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ ++ + IL GLRE+YE HH K + A+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPTVDETIEILRGLRERYEQHHKLKISDVALEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QVLKEKDD 428
Query: 556 GSRLKYDDVVASMGD-----TSEI-VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
R + D ++ D +EI + + + S DE VV +DIA + + W+G+PV
Sbjct: 429 AVRSQNFDRAGALRDREMEIKAEIRAIAQNKKTESSSDETPVVTEEDIAQIVASWTGVPV 488
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E+ L +R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPTG
Sbjct: 489 NKLTESESEKLLHMEDTLHQRLIGQDEAVRAVSRAIRRARVGLKNPNRPIASFIFSGPTG 548
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL K+LA+ +FGS
Sbjct: 549 VGKTELTKALASYFFGS 565
>gi|427706010|ref|YP_007048387.1| ATPase [Nostoc sp. PCC 7107]
gi|427358515|gb|AFY41237.1| ATPase AAA-2 domain protein [Nostoc sp. PCC 7107]
Length = 823
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 280/618 (45%), Positives = 388/618 (62%), Gaps = 64/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E S +G+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVSATGQ 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ GRT+ L++F +LT A++ +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 S------GRTKTPTLDEFGSNLTQMATDNKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLASRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLR++YE HH K + EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVDETIEILHGLRDRYEQHHKLKISDEALIAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QILKEKDD 428
Query: 556 GSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
R + D + D +EI + +S AS D VV +DIA + + W+G+P
Sbjct: 429 AVRSQDFDRAGELRDREMEIKAEIRAIAQSKTNGASGDGVEPVVTEEDIAHIVASWTGVP 488
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 489 VNKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPT 548
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAKSLA+ +FGS
Sbjct: 549 GVGKTELAKSLASYFFGS 566
>gi|298492878|ref|YP_003723055.1| ATPase AAA-2 domain-containing protein ['Nostoc azollae' 0708]
gi|298234796|gb|ADI65932.1| ATPase AAA-2 domain protein ['Nostoc azollae' 0708]
Length = 824
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 282/618 (45%), Positives = 388/618 (62%), Gaps = 63/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E S G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA----EVSPGGG--------- 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S GRT+ L++F +LT A++ +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 -----SSGRTKTPTLDEFGSNLTQMATDNKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLASRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RSAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLR++YE HH K + EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVDETIEILYGLRDRYEQHHKLKISDEALVAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDLVDEAGSR + I S+ P + +E+R Q + E
Sbjct: 384 DRYLPDKAIDLVDEAGSRVRL------------INSQLPPAAKELDKELR--QILKEKDD 429
Query: 556 GSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
R + D + D +EI + ++ +A D VV +DIA + + W+G+P
Sbjct: 430 AVRSQDFDRAGELRDREMEIKAEIRTIAQTKTNAAGGDGVEPVVTEEDIAHIVASWTGVP 489
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E+ L +R+IGQD+AV A+SRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 490 VNKLTESESEKLLHMEDTLHQRLIGQDDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPT 549
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAKSLA+ +FGS
Sbjct: 550 GVGKTELAKSLASYFFGS 567
>gi|440683788|ref|YP_007158583.1| ATPase AAA-2 domain protein [Anabaena cylindrica PCC 7122]
gi|428680907|gb|AFZ59673.1| ATPase AAA-2 domain protein [Anabaena cylindrica PCC 7122]
Length = 824
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 282/620 (45%), Positives = 386/620 (62%), Gaps = 67/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAK--EGREPSLAKGVRENSIS 256
+ LGL +G A RVL+ LGVD++ + V R+ GE A+ G PS
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAEVSPGGGPS----------- 155
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
GRT+ L++F +LT A++ +DPV+GR EI+R+IQIL RRTKNNP+L
Sbjct: 156 ---------GRTKTPTLDEFGSNLTQMATDNKLDPVVGRAKEIERVIQILGRRTKNNPVL 206
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++
Sbjct: 207 IGEPGVGKTAIAEGLASRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMD 266
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 267 EIRSAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYR 321
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
E+D AL RRFQPV++ EPS + + IL GLRE+YE HH K + EA+ AA LS RY
Sbjct: 322 KHIERDAALERRFQPVMVGEPSVAETIEILFGLRERYEQHHKLKISDEALEAAAKLSDRY 381
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEV 553
ISDRYLPDKAIDLVDEAGSR + I S+ P + +E+R Q + E
Sbjct: 382 ISDRYLPDKAIDLVDEAGSRVRL------------INSQLPPAAKELDKELR--QILKEK 427
Query: 554 VQGSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
R + D + D +EI + +S + D VV +DIA + + W+G
Sbjct: 428 DDAVRSQDFDRAGELRDREMEIKAEIRAIAQSKTNATGGDGLEPVVTEEDIAHIVASWTG 487
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV ++T E L+ +E+ L +R+IGQD+AV A+SRA++R+RVGLK+PNRP A+ +F G
Sbjct: 488 VPVNKLTESESEKLLHMEDTLHQRLIGQDDAVKAVSRAIRRARVGLKNPNRPIASFVFSG 547
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAKSLA+ +FGS
Sbjct: 548 PTGVGKTELAKSLASYFFGS 567
>gi|427728669|ref|YP_007074906.1| chaperone ATPase [Nostoc sp. PCC 7524]
gi|427364588|gb|AFY47309.1| ATPase with chaperone activity, ATP-binding subunit [Nostoc sp. PCC
7524]
Length = 815
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 276/618 (44%), Positives = 384/618 (62%), Gaps = 70/618 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT A+K ++ +Q EA+ LG + V T+ +LLGL+ E E G+T+ AR
Sbjct: 1 MFEHFTSEAIKVIMLAQEEARRLGHNFVGTEQILLGLMGEGTGVAAKVLTELGVTLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F ++PF+ K +FE + + S G+N+I EH
Sbjct: 61 REVEKII------------GRGSGFVPP-EIPFTPKVKSLFEQSFREAHSLGHNYINTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL+ LGVD+ ++ + + RL G +P++ G
Sbjct: 108 LLLGLTEAGEGVAAKVLQNLGVDLRNVRSAVIRRL-------GEDPTVVVGG-------- 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
SP R + E+F +LT A E +DPV+GR+ EI+R IQIL RRTKNNP+L+G
Sbjct: 153 ----GSPRRGQTLTTEEFGRNLTKLAQEGKLDPVVGRQKEIERAIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ +VP L K+++SLDMGLL+AG + RG+ E R+ ++ E+
Sbjct: 209 EPGVGKTAIAEGLAQRIINQDVPEVLEGKQVISLDMGLLVAGTRFRGDFEERIKKIVDEV 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G++IL IDE+HTL+G+G G +G GLD +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RTAGNIILVIDEIHTLVGAG----GTEG-GLDAANILKPALARGELQCIGATTLDEYRQH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+L+ EPS E+ + IL GLR YE HH + + EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPILVGEPSVEETIEILYGLRGVYEQHHKVQISDEAVVAAAELSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSR-----AHIEL---FKRKKEQQTCILSKPPDDYWQEIRTVQAM 550
DR+LPDKAIDL+DEAGSR +HI KRK Q T +A
Sbjct: 384 DRFLPDKAIDLIDEAGSRVRLRNSHISTDKELKRKLAQVT-----------------KAK 426
Query: 551 HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDD--EPAVVGPDDIAAVASLWSGIP 608
+E V RL+ D + D EI +E+ L +AS + P VV +DIA + + W+G+P
Sbjct: 427 NEAV---RLQNFDQAGELRD-QEIALETELQAASVEKVIYPIVVDEEDIAQIVASWTGVP 482
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E LL+ LE+ L KR+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 483 VNKLTESESELLLHLEDTLHKRLIGQEQAVTAVSRAIRRARVGLKNPNRPIASFIFSGPT 542
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAK+LAA +FG+
Sbjct: 543 GVGKTELAKALAAYFFGA 560
>gi|172039160|ref|YP_001805661.1| ATP-dependent Clp protease regulatory subunit [Cyanothece sp. ATCC
51142]
gi|354552562|ref|ZP_08971870.1| ATPase AAA-2 domain protein [Cyanothece sp. ATCC 51472]
gi|171700614|gb|ACB53595.1| ATP-dependent Clp protease, regulatory subunit [Cyanothece sp. ATCC
51142]
gi|353555884|gb|EHC25272.1| ATPase AAA-2 domain protein [Cyanothece sp. ATCC 51472]
Length = 822
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 277/617 (44%), Positives = 388/617 (62%), Gaps = 63/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + + +L GE A E + G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRTQVIRQL-GETA-------------EVAAGGG 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T PGRT+ L++F +LT A++ +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 T-----PGRTKTPTLDEFGSNLTQLAADGQLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+RT+ + +
Sbjct: 384 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELRTI--LKQKDD 429
Query: 556 GSRLKYDDVVASMGDTSEIVVES--SLPSA----SDDDEPAVVGPDDIAAVASLWSGIPV 609
R + D + D + E S+ SA ++DEP V ++IA + + W+G+PV
Sbjct: 430 AVRSQDFDRAGELRDQEMDIKEQIRSISSAKKGEGENDEP-FVDSEEIAHIVASWTGVPV 488
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTG
Sbjct: 489 NKLTETESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPTG 548
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL K+LA +FGS
Sbjct: 549 VGKTELTKALATYFFGS 565
>gi|254414473|ref|ZP_05028239.1| ATPase, AAA family [Coleofasciculus chthonoplastes PCC 7420]
gi|196178703|gb|EDX73701.1| ATPase, AAA family [Coleofasciculus chthonoplastes PCC 7420]
Length = 824
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 279/618 (45%), Positives = 382/618 (61%), Gaps = 65/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLTKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ S GRT+ L++F +LT A E +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VTSGASSGRTKTPTLDEFGSNLTQMAGEGKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANNDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ +VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RQAANVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K EA++AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDEALDAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QVLKEKDD 428
Query: 556 GSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
R + D + D EI + ++ DD P VV +DIA + + W+G+P
Sbjct: 429 AVRSQDFDRAGELRDREMEIKGEIRAIAQNKKAETGTDDSP-VVDEEDIAHIVASWTGVP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 488 VSKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPT 547
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAKSLAA +FGS
Sbjct: 548 GVGKTELAKSLAAYFFGS 565
>gi|67920889|ref|ZP_00514408.1| UvrB/UvrC protein:AAA ATPase, central region:Clp, N terminal:Clp, N
terminal [Crocosphaera watsonii WH 8501]
gi|67857006|gb|EAM52246.1| UvrB/UvrC protein:AAA ATPase, central region:Clp, N terminal:Clp, N
terminal [Crocosphaera watsonii WH 8501]
Length = 823
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 278/618 (44%), Positives = 388/618 (62%), Gaps = 65/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGV+++ + + +L GE A E + G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVNLSKVRTQVIRQL-GETA-------------EVAAGGG 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T PGRT+ L++F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 T-----PGRTKTPTLDEFGSNLTQLAGEGQLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ V IL GLRE+YE HH K EA++AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVDETVEILFGLRERYEQHHKLKILDEALDAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+RT+ + +
Sbjct: 384 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELRTI--LKQKDD 429
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSAS-------DDDEPAVVGPDDIAAVASLWSGIP 608
R + D + D E+ ++ + S S D EP V ++IA + + W+G+P
Sbjct: 430 AVRSQDFDRAGELRD-QEMDIKEQIRSISTAKKGEGDSAEP-FVDAEEIAQIVASWTGVP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 488 VNKLTETESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPT 547
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL KSLAA +FGS
Sbjct: 548 GVGKTELTKSLAAYFFGS 565
>gi|37521633|ref|NP_925010.1| endopeptidase Clp ATP-binding chain [Gloeobacter violaceus PCC
7421]
gi|35212631|dbj|BAC90005.1| endopeptidase Clp ATP-binding chain [Gloeobacter violaceus PCC
7421]
Length = 819
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 279/615 (45%), Positives = 384/615 (62%), Gaps = 59/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E S G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVSAGGN 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T GRT+ L++F +LT A+E +DPV+GRE EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 T------GRTKTPTLDEFGSNLTQMAAEGKLDPVVGREKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRISNNDIPDILADKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+V+L IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RAAGNVVLVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ ++ + IL GLRE+YE HH K T EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPTVDETIEILRGLRERYEQHHKLKITDEALIAAAQLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDLVDEAGSR + + L + +E+R Q + E R
Sbjct: 383 DRYLPDKAIDLVDEAGSRVRL---------LSSQLPPAAKELDKELR--QILKEKDDAVR 431
Query: 559 LKYDDVVASMGDTSEIVVESSL-------PSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + + D E+ ++S + S + ++E V +DIA + S W+G+PV +
Sbjct: 432 GQDYERAGELRD-REMEIKSQIRSIAQARKSETANEESPNVTEEDIAYIVSSWTGVPVSK 490
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L+ +E+ L +R+IGQ+EAV AISRA++R+RVGLK+P RP A+ +F GPTGVG
Sbjct: 491 LTESETEKLLHMEDVLHQRLIGQEEAVKAISRAIRRARVGLKNPKRPIASFIFSGPTGVG 550
Query: 672 KTELAKSLAACYFGS 686
KTELAKSLA +FGS
Sbjct: 551 KTELAKSLATYFFGS 565
>gi|428220165|ref|YP_007104335.1| chaperone ATPase [Synechococcus sp. PCC 7502]
gi|427993505|gb|AFY72200.1| ATPase with chaperone activity, ATP-binding subunit [Synechococcus
sp. PCC 7502]
Length = 828
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 277/615 (45%), Positives = 380/615 (61%), Gaps = 58/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+A GRT+ L++F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VSAGGGGGRTKTPTLDEFGSNLTQLAMEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRITSGDIPDILQDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ S +VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSSNNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K + AI+AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVEETIEILFGLRERYEQHHKLKISDLAIDAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR + L + +E+R Q + + R
Sbjct: 383 DRFLPDKAIDLIDEAGSRVRL---------LNSQLPPAAKELDKELR--QLLKDKDDAVR 431
Query: 559 LKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ D A + D EI + ++ + DD VV +DIA + S W+G+PV +
Sbjct: 432 SQDFDKAAKLRDRELEIKQEIRNLSQAKKAETTKDDVVPVVTEEDIAHIVSSWTGVPVSK 491
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E + L+ +EE L +R+IGQ+EAV A SRA++R+RVGLK+PNRP A+ +F GPTGVG
Sbjct: 492 LTESESLKLMQMEETLHQRLIGQEEAVKATSRAIRRARVGLKNPNRPIASFIFSGPTGVG 551
Query: 672 KTELAKSLAACYFGS 686
KTEL K+LAA +FGS
Sbjct: 552 KTELTKALAAYFFGS 566
>gi|428210348|ref|YP_007094701.1| ATPase [Chroococcidiopsis thermalis PCC 7203]
gi|428012269|gb|AFY90832.1| ATPase AAA-2 domain protein [Chroococcidiopsis thermalis PCC 7203]
Length = 824
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 274/619 (44%), Positives = 378/619 (61%), Gaps = 65/619 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKTMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+A GRT+ L++F +LT A E +DPV+GRE EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VSAGSQSGRTKTPTLDEFGSNLTQMAGEGKLDPVVGREKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLASRIANKDVPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLR++YE HH K + A+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVDETIEILFGLRDRYEQHHKLKISDAALEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QVLKEKDD 428
Query: 556 GSRLKYDDVVASMGDTS--------EIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
R + D + D I + + S+ D+ VV +DIA + + W+G+
Sbjct: 429 AVRTQDFDRAGELRDREMELRAEIRAIAQSKTGTTKSEGDDSPVVTEEDIAQIVASWTGV 488
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T E L+ +E+ L +R+IGQ+EAV A+S+A++R+RVGLK+PNRP A+ +F GP
Sbjct: 489 PVNKLTESESEKLLHMEDTLHQRLIGQEEAVRAVSKAIRRARVGLKNPNRPIASFVFSGP 548
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGKTEL KSLAA +FGS
Sbjct: 549 TGVGKTELTKSLAAYFFGS 567
>gi|422303962|ref|ZP_16391311.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9806]
gi|389791002|emb|CCI13172.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9806]
Length = 821
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 273/610 (44%), Positives = 382/610 (62%), Gaps = 49/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S GRT+ L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 149 AAGSSSQGRTKTPTLDEFGSNLTQMASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R Q +K D ++I ++ + V+G
Sbjct: 384 DRFLPDKAIDLIDEAGSRV------RLINSQLPPAAKELDKELRQI--LKQKDDAVRGQD 435
Query: 559 LKYDDVVAS--MGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
+ + M ++I +S D ++ V ++IA + + W+G+PV ++T E
Sbjct: 436 FEKAGELRDREMEIKTQIRNLASTKKGEDGNDEPFVDAEEIAHIVASWTGVPVNKLTETE 495
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTEL
Sbjct: 496 SEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELT 555
Query: 677 KSLAACYFGS 686
K+LAA +FGS
Sbjct: 556 KALAAYFFGS 565
>gi|218246261|ref|YP_002371632.1| ATPase AAA [Cyanothece sp. PCC 8801]
gi|218166739|gb|ACK65476.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 8801]
Length = 822
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 277/617 (44%), Positives = 388/617 (62%), Gaps = 63/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + + +L GE A E + G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRTQVIRQL-GETA-------------EVAAGGG 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T+ GRT+ L++F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 TS-----GRTKTPTLDEFGSNLTNLAGEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ ++ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPTVDETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R + + +
Sbjct: 384 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELRGI--LKQKDD 429
Query: 556 GSRLKYDDVVASMGD-----TSEI-VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
R + D + D +EI + SS + D+DEP V ++IA + + W+G+PV
Sbjct: 430 AVRAQDFDKAGELRDREMEIKAEIRAISSSKKAEGDNDEP-FVDAEEIAHIVASWTGVPV 488
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTG
Sbjct: 489 NKLTETESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPTG 548
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL K+LAA +FGS
Sbjct: 549 VGKTELTKALAAYFFGS 565
>gi|425437952|ref|ZP_18818364.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9432]
gi|389676952|emb|CCH94083.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9432]
Length = 821
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 272/610 (44%), Positives = 382/610 (62%), Gaps = 49/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S GRT+ L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 149 AAGSSSQGRTKTPTLDEFGSNLTQMASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+V+L IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVVLVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R Q +K D ++I ++ + V+G
Sbjct: 384 DRFLPDKAIDLIDEAGSRV------RLINSQLPPAAKELDKELRQI--LKQKDDAVRGQD 435
Query: 559 LKYDDVVAS--MGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
+ + M ++I +S D ++ V ++IA + + W+G+PV ++T E
Sbjct: 436 FEKAGELRDREMEIKTQIRNLASTKKGEDGNDEPFVDAEEIAHIVASWTGVPVNKLTETE 495
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTEL
Sbjct: 496 SEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELT 555
Query: 677 KSLAACYFGS 686
K+LAA +FGS
Sbjct: 556 KALAAYFFGS 565
>gi|425438612|ref|ZP_18818956.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9717]
gi|425462269|ref|ZP_18841743.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9808]
gi|425470166|ref|ZP_18849036.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9701]
gi|440752077|ref|ZP_20931280.1| clp amino terminal domain protein [Microcystis aeruginosa TAIHU98]
gi|443661761|ref|ZP_21132789.1| clp amino terminal domain protein [Microcystis aeruginosa
DIANCHI905]
gi|159029700|emb|CAO87778.1| clpC [Microcystis aeruginosa PCC 7806]
gi|389720211|emb|CCH96065.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9717]
gi|389824679|emb|CCI26165.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9808]
gi|389884278|emb|CCI35401.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9701]
gi|440176570|gb|ELP55843.1| clp amino terminal domain protein [Microcystis aeruginosa TAIHU98]
gi|443332247|gb|ELS46866.1| clp amino terminal domain protein [Microcystis aeruginosa
DIANCHI905]
Length = 821
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 272/610 (44%), Positives = 382/610 (62%), Gaps = 49/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S GRT+ L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 149 AAGSSSQGRTKTPTLDEFGSNLTQMASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+V+L IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVVLVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R Q +K D ++I ++ + V+G
Sbjct: 384 DRFLPDKAIDLIDEAGSRV------RLINSQLPPAAKELDKELRQI--LKQKDDAVRGQD 435
Query: 559 LKYDDVVAS--MGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
+ + M ++I +S D ++ V ++IA + + W+G+PV ++T E
Sbjct: 436 FEKAGELRDREMEIKTQIRNLASTKKGEDGNDEPFVDAEEIAHIVASWTGVPVNKLTETE 495
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTEL
Sbjct: 496 SEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELT 555
Query: 677 KSLAACYFGS 686
K+LAA +FGS
Sbjct: 556 KALAAYFFGS 565
>gi|425451878|ref|ZP_18831697.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 7941]
gi|389766574|emb|CCI07823.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 7941]
Length = 821
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 272/610 (44%), Positives = 382/610 (62%), Gaps = 49/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S GRT+ L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 149 AAGSSSQGRTKTPTLDEFGSNLTQMASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+V+L IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVVLVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R Q +K D ++I ++ + V+G
Sbjct: 384 DRFLPDKAIDLIDEAGSRV------RLINSQLPPAAKELDKELRQI--LKQKDDAVRGQD 435
Query: 559 LKYDDVVAS--MGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
+ + M ++I +S D ++ V ++IA + + W+G+PV ++T E
Sbjct: 436 FEKAGELRDREMEIKTQIRNLASTKKGEDGNDEPFVDAEEIAHIVASWTGVPVNKLTETE 495
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTEL
Sbjct: 496 SEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELT 555
Query: 677 KSLAACYFGS 686
K+LAA +FGS
Sbjct: 556 KALAAYFFGS 565
>gi|257059311|ref|YP_003137199.1| AAA ATPase [Cyanothece sp. PCC 8802]
gi|256589477|gb|ACV00364.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 8802]
Length = 822
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/617 (44%), Positives = 387/617 (62%), Gaps = 63/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + + +L GE A E + G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRTQVIRQL-GETA-------------EVAAGGG 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T+ GRT+ L++F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 TS-----GRTKTPTLDEFGSNLTNLAGEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ + + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPTVNETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R + + +
Sbjct: 384 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELRGI--LKQKDD 429
Query: 556 GSRLKYDDVVASMGD-----TSEI-VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
R + D + D +EI + SS + D+DEP V ++IA + + W+G+PV
Sbjct: 430 AVRAQDFDKAGELRDREMEIKAEIRAISSSKKAEGDNDEP-FVDAEEIAHIVASWTGVPV 488
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTG
Sbjct: 489 NKLTETESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPTG 548
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL K+LAA +FGS
Sbjct: 549 VGKTELTKALAAYFFGS 565
>gi|33863332|ref|NP_894892.1| protein ClpC [Prochlorococcus marinus str. MIT 9313]
gi|33640781|emb|CAE21236.1| ClpC [Prochlorococcus marinus str. MIT 9313]
Length = 859
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/636 (43%), Positives = 393/636 (61%), Gaps = 67/636 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 SVNLKDA--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LGVD+ + V R+ GE A+ + G S KTA
Sbjct: 110 LGLIREGEGVAARVLENLGVDLAKVR-TQVIRMLGETAE------VTAGGGGGKGSTKTA 162
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L ++F +LT A+E +DPV+GR+ EI R+IQIL RRTKNNP+L+GE
Sbjct: 163 TL-----------DEFGSNLTQLANESKLDPVVGRQNEIDRVIQILGRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 212 GVGKTAIAEGLAQRIQQGDIPDILEEKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKA 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 272 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV++ EPS + + IL GLRE+YE HH K T EA++AA +L RYISDR
Sbjct: 327 RDAALERRFQPVMVGEPSIAETIEILQGLRERYEQHHRLKITDEALDAAANLGDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDYWQ 542
+LPDKAIDL+DEAGSR + EL K +KE++ + +K + +
Sbjct: 387 FLPDKAIDLIDEAGSRVRLLNSKLPPAAKEVDKELRKVQKEKEDAVRDQDFAKAGELREK 446
Query: 543 EIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDE--------PAVVGP 594
E+ + + ++Q SR ++ S +E V SS + + E P + P
Sbjct: 447 EVELREKIRTLLQSSRQGSEE---SPPAEAENAVRSSDETPTPQPEKNTTAALIPHLTTP 503
Query: 595 ----DDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRV 650
+DIA + + W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+S+A++R+RV
Sbjct: 504 LVTEEDIANIVAAWTGVPVQKLTESESVKLLNMEETLHQRLIGQDEAVKAVSKAIRRARV 563
Query: 651 GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
GLK+PNRP A+ +F GPTGVGKTEL K+LA +FGS
Sbjct: 564 GLKNPNRPIASFIFSGPTGVGKTELTKALATYFFGS 599
>gi|166368696|ref|YP_001660969.1| ATP-dependent Clp protease ATPase subunit [Microcystis aeruginosa
NIES-843]
gi|425465251|ref|ZP_18844561.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9809]
gi|166091069|dbj|BAG05777.1| ATP-dependent Clp protease ATPase subunit [Microcystis aeruginosa
NIES-843]
gi|389832560|emb|CCI23740.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9809]
Length = 821
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 272/610 (44%), Positives = 382/610 (62%), Gaps = 49/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLRDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S GRT+ L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 149 AAGSSSQGRTKTPTLDEFGSNLTQMASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+V+L IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVVLVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R Q +K D ++I ++ + V+G
Sbjct: 384 DRFLPDKAIDLIDEAGSRV------RLINSQLPPAAKELDKELRQI--LKQKDDAVRGQD 435
Query: 559 LKYDDVVAS--MGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
+ + M ++I +S D ++ V ++IA + + W+G+PV ++T E
Sbjct: 436 FEKAGELRDREMEIKTQIRNLASTKKGEDGNDEPFVDAEEIAHIVASWTGVPVNKLTETE 495
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTEL
Sbjct: 496 SEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELT 555
Query: 677 KSLAACYFGS 686
K+LAA +FGS
Sbjct: 556 KALAAYFFGS 565
>gi|16331384|ref|NP_442112.1| ATP-dependent Clp protease regulatory subunit [Synechocystis sp.
PCC 6803]
gi|383323125|ref|YP_005383978.1| ATP-dependent Clp protease regulatory subunit [Synechocystis sp.
PCC 6803 substr. GT-I]
gi|383326294|ref|YP_005387147.1| ATP-dependent Clp protease regulatory subunit [Synechocystis sp.
PCC 6803 substr. PCC-P]
gi|383492178|ref|YP_005409854.1| ATP-dependent Clp protease regulatory subunit [Synechocystis sp.
PCC 6803 substr. PCC-N]
gi|384437446|ref|YP_005652170.1| ATP-dependent Clp protease regulatory subunit [Synechocystis sp.
PCC 6803]
gi|451815537|ref|YP_007451989.1| ATP-dependent Clp protease regulatory subunit [Synechocystis sp.
PCC 6803]
gi|1001555|dbj|BAA10182.1| ATP-dependent Clp protease regulatory subunit [Synechocystis sp.
PCC 6803]
gi|339274478|dbj|BAK50965.1| ATP-dependent Clp protease regulatory subunit [Synechocystis sp.
PCC 6803]
gi|359272444|dbj|BAL29963.1| ATP-dependent Clp protease regulatory subunit [Synechocystis sp.
PCC 6803 substr. GT-I]
gi|359275614|dbj|BAL33132.1| ATP-dependent Clp protease regulatory subunit [Synechocystis sp.
PCC 6803 substr. PCC-N]
gi|359278784|dbj|BAL36301.1| ATP-dependent Clp protease regulatory subunit [Synechocystis sp.
PCC 6803 substr. PCC-P]
gi|407961235|dbj|BAM54475.1| ATP-dependent Clp protease regulatory subunit [Synechocystis sp.
PCC 6803]
gi|451781506|gb|AGF52475.1| ATP-dependent Clp protease regulatory subunit [Synechocystis sp.
PCC 6803]
Length = 821
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 274/617 (44%), Positives = 385/617 (62%), Gaps = 63/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S GRT+ L++F +LT A+E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 149 AAGGGSGGRTKTPTLDEFGSNLTQMAAEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++IL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 384 DRFLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QILKEKDD 429
Query: 556 GSRLKYDDVVASMGDTSEIV------VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
R + + + D + + + SS + D+ EP V ++IA + + W+G+PV
Sbjct: 430 AVRNQDFEQAGELKDREDEIKKQIRAIASSKKAEGDNGEPEVT-SEEIAHIVASWTGVPV 488
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTG
Sbjct: 489 NKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTG 548
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL K+LAA +FGS
Sbjct: 549 VGKTELTKALAAYFFGS 565
>gi|126657032|ref|ZP_01728203.1| ATP-dependent Clp protease regulatory subunit [Cyanothece sp.
CCY0110]
gi|126621575|gb|EAZ92285.1| ATP-dependent Clp protease regulatory subunit [Cyanothece sp.
CCY0110]
Length = 822
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/617 (44%), Positives = 388/617 (62%), Gaps = 63/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + + +L GE A E + G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRTQVIRQL-GETA-------------EVAAGGG 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T PGRT+ L++F +LT A++ +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 T-----PGRTKTPTLDEFGSNLTQLAADGQLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVDETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+RT+ + +
Sbjct: 384 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELRTI--LKQKDD 429
Query: 556 GSRLKYDDVVASMGDTSEIVVES--SLPSA----SDDDEPAVVGPDDIAAVASLWSGIPV 609
R + D + D + E S+ SA ++DEP V ++IA + + W+G+PV
Sbjct: 430 AVRSQDFDRAGELRDQEMDIKEQIRSISSAKKGEGENDEP-FVDAEEIAHIVASWTGVPV 488
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTG
Sbjct: 489 NKLTETESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPTG 548
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL K+LA +FGS
Sbjct: 549 VGKTELTKALATYFFGS 565
>gi|302841992|ref|XP_002952540.1| hypothetical protein VOLCADRAFT_75431 [Volvox carteri f.
nagariensis]
gi|300262179|gb|EFJ46387.1| hypothetical protein VOLCADRAFT_75431 [Volvox carteri f.
nagariensis]
Length = 915
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 278/632 (43%), Positives = 390/632 (61%), Gaps = 50/632 (7%)
Query: 66 PICARK--RRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH 123
P ARK R + + S+FERFTE+A+K V+ +Q EA+ LG + V T+ LLLGLI E
Sbjct: 58 PTAARKSGRAGRLVVKSMFERFTEKAIKVVMLAQEEARRLGHNFVGTEQLLLGLIGESTG 117
Query: 124 -PNGFLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEA 181
L+S G+ + AR V I +G F A ++PF+ KRV E
Sbjct: 118 IAAKVLKSMGVNLKDARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLEM 164
Query: 182 AVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEG 241
++E +R G+N+I EHI LGL +G A RVL+ LG D + V R+ GE
Sbjct: 165 SLEEARQLGHNYIGTEHILLGLLREGEGVAARVLETLGADPAKIR-TQVIRMVGE----S 219
Query: 242 REPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQR 301
+EP + ++ G + L+++ +LT +A+E +DPV+GR+ +I+R
Sbjct: 220 QEP----------VGAGVGGSQAQGSNKTPTLQEYGTNLTQQAAEGKLDPVVGRKKQIER 269
Query: 302 IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361
+IQIL RRTKNNP L+GE GVGKTA+AEGLA +I +VP + K++++LDMGLL+AG
Sbjct: 270 VIQILGRRTKNNPCLIGEPGVGKTAVAEGLAQKIATGDVPETIEGKQVITLDMGLLVAGT 329
Query: 362 KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421
K RGE E R+ L+ EI+++ D+IL IDEVHTLIG+G +G +D +N+LKP+L R
Sbjct: 330 KYRGEFEERLKKLMDEIKQNDDIILMIDEVHTLIGAGAA----EGA-IDAANILKPALAR 384
Query: 422 GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKF 481
GELQCI +TT DE+R EKD AL RRFQPV + EP+ E+ IL GLRE+YE HH ++
Sbjct: 385 GELQCIGATTLDEYRKHIEKDPALERRFQPVTVPEPTIEETFEILQGLRERYETHHKLRY 444
Query: 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA---HIELFKR----KKEQQTCILS 534
T E++ AA S++YISDR+LPDKAIDL+DEAGSR HI+L + KE +
Sbjct: 445 TDESLMAAAKYSSQYISDRFLPDKAIDLIDEAGSRVRLRHIQLPEEARDLDKELRQVTKD 504
Query: 535 KPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP 594
K Q+ + + + K ++A + S+ ES VV
Sbjct: 505 KDAAVRAQDFEKAGQLRDREMELKAKIQAIIAGAKEASKAEAESVEGGGP------VVTE 558
Query: 595 DDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKD 654
DIA++ + W+GIP++++++DE L+ +EE L RVIGQ+EAV+AISRA++R+RVGLK+
Sbjct: 559 QDIASIVAQWTGIPIEKVSSDETERLIKMEEVLHGRVIGQEEAVSAISRAIRRARVGLKN 618
Query: 655 PNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
PNRP A+ +F GPTGVGK+ELAK+LA YFGS
Sbjct: 619 PNRPIASFIFAGPTGVGKSELAKTLANYYFGS 650
>gi|425443940|ref|ZP_18824003.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9443]
gi|425455767|ref|ZP_18835478.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9807]
gi|389732831|emb|CCI03294.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9443]
gi|389803296|emb|CCI17774.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9807]
Length = 821
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 272/610 (44%), Positives = 381/610 (62%), Gaps = 49/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S GRT+ L++F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 149 AAGSSSQGRTKTPTLDEFGSNLTQMAGEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R Q +K D ++I ++ + V+G
Sbjct: 384 DRFLPDKAIDLIDEAGSRV------RLINSQLPPAAKELDKELRQI--LKQKDDAVRGQD 435
Query: 559 LKYDDVV--ASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
+ + M ++I +S D ++ V ++IA + + W+G+PV ++T E
Sbjct: 436 FEKAGELRDREMEIKTQIRNLASTKKGEDGNDEPFVDAEEIAHIVASWTGVPVNKLTETE 495
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTEL
Sbjct: 496 SEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELT 555
Query: 677 KSLAACYFGS 686
K+LAA +FGS
Sbjct: 556 KALAAYFFGS 565
>gi|300864107|ref|ZP_07109004.1| ATPase AAA-2 [Oscillatoria sp. PCC 6506]
gi|300337892|emb|CBN54150.1| ATPase AAA-2 [Oscillatoria sp. PCC 6506]
Length = 823
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 275/616 (44%), Positives = 377/616 (61%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S GRT+ L++F +LT A + +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VTAGSSTGRTKTPTLDEFGANLTQMAVDGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANNDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ E+ + IL GLRE+YE HH K A+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPTVEETIEILFGLRERYEQHHKLKILDSALEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDLVDEAGSR + + L + +E+R Q + E + R
Sbjct: 383 DRYLPDKAIDLVDEAGSRVRL---------LSSQLPPAAKELDKELR--QVLKEKDEAVR 431
Query: 559 LKYDDVVASMGDTS-EIVVE-------SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ D + D EI E SD D V +DIA + + W+G+PV
Sbjct: 432 SQDFDKAGELRDREMEIKAEIRAISQTKKTEGKSDTDVSPNVTEEDIAQIVASWTGVPVN 491
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T E L+ +E+ L +R+IGQ+EAV A+SRA++R+RVGLK+PNRP A+ +F GPTGV
Sbjct: 492 KLTESESEKLLHMEDTLHQRLIGQEEAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGV 551
Query: 671 GKTELAKSLAACYFGS 686
GKTEL K+LA+ +FGS
Sbjct: 552 GKTELTKALASYFFGS 567
>gi|284929449|ref|YP_003421971.1| ATPase with chaperone activity, ATP-binding subunit [cyanobacterium
UCYN-A]
gi|284809893|gb|ADB95590.1| ATPase with chaperone activity, ATP-binding subunit [cyanobacterium
UCYN-A]
Length = 825
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 275/619 (44%), Positives = 392/619 (63%), Gaps = 67/619 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + + +L GE A+ A GV
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRTQVIRQL-GETAE-----VAAGGV-------- 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+PGRT+ L++F +LT A++ +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 -----APGRTKTPTLDEFGSNLTQLATDGQLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L K++++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIADQDIPDILEDKKVVTLDIGLLVAGTKYRGEFEERLKKIMEEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ ++IL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQTENIILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EP+ E+ V+IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IEKDAALERRFQPVMVGEPTVEETVQILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSK-PPD--DYWQEIRTV-QAMHEVV 554
DR+LPDKAIDL+DEAGSR + I S+ PP+ + +E+RT+ + + V
Sbjct: 384 DRFLPDKAIDLIDEAGSRVRL------------INSQLPPEAKELDKELRTILKQKDDAV 431
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSAS-------DDDEPAVVGPDDIAAVASLWSGI 607
+ + A E+ ++S + S S ++DEP V ++IA + + W+G+
Sbjct: 432 RSQDFNH----AGQLRDQEMEIKSKIRSISSTKKGEGENDEP-FVDSEEIAHIVASWTGV 486
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T E L+ +E L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GP
Sbjct: 487 PVNKLTETESEKLLNMETTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGP 546
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGKTEL K+LAA +FGS
Sbjct: 547 TGVGKTELTKALAAYFFGS 565
>gi|307154665|ref|YP_003890049.1| ATPase AAA-2 domain-containing protein [Cyanothece sp. PCC 7822]
gi|306984893|gb|ADN16774.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 7822]
Length = 821
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 275/614 (44%), Positives = 385/614 (62%), Gaps = 57/614 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E + G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVAAGGP 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T GR + L++F +LT A+E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 TT-----GRNKTPTLDEFGSNLTQMAAEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIATKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ ++ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPTVDETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAGSR + T L + +E+R Q + + R
Sbjct: 384 DRYLPDKAIDLIDEAGSRVRL---------ITSQLPPAAKELDKELR--QVLKQKDDAVR 432
Query: 559 LKYDDVVASMGD-----TSEI-VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ D + D +EI + S+ + + DEP+ V ++IA + + W+GIPV ++
Sbjct: 433 SQDFDRAGELRDREMEIKAEIRAIASAKKTEGESDEPS-VDAEEIANIVASWTGIPVNKL 491
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGK
Sbjct: 492 TETESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPTGVGK 551
Query: 673 TELAKSLAACYFGS 686
TEL K+LAA +FGS
Sbjct: 552 TELTKALAAYFFGS 565
>gi|428774264|ref|YP_007166052.1| ATPase [Cyanobacterium stanieri PCC 7202]
gi|428688543|gb|AFZ48403.1| ATPase AAA-2 domain protein [Cyanobacterium stanieri PCC 7202]
Length = 824
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 275/616 (44%), Positives = 382/616 (62%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKPMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE E G R N
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLGKVRT-QVIRMLGE--TESAPVGAGGGSRSN----- 159
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
K+P L++F +LT A+E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 160 ----KTP------TLDEFGSNLTNLATEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 210 EPGVGKTAIAEGLAQRIGNKDVPDLLEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMEEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 270 RQAGNVILVIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEYRKH 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D ALARRFQPV++ EPS ++ + IL GLRE+YE HH K + EA++AA LS RYIS
Sbjct: 325 IERDAALARRFQPVMVGEPSVDETIEILFGLRERYEQHHKLKISDEALDAAAKLSDRYIS 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAGSR + L + +E+R Q + E + R
Sbjct: 385 DRYLPDKAIDLIDEAGSRVRL---------LNSQLPAEAKELDKELR--QVLKEKDEAVR 433
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDD--------DEPAVVGPDDIAAVASLWSGIPVQ 610
+ D + D E+ +++ + +D D P VV ++IA + + W+G+PVQ
Sbjct: 434 SQDFDKAGELRD-REMEIKTEIRGLADQKKQNPDVSDNP-VVNEEEIAQIVASWTGVPVQ 491
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T E L+ +E+ L +R+IGQ++AV AISRA++R+RVGLK+PNRP A+ +F GPTGV
Sbjct: 492 KLTESESEKLLHMEDTLHQRIIGQEDAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGV 551
Query: 671 GKTELAKSLAACYFGS 686
GKTEL K+LA +FGS
Sbjct: 552 GKTELTKALATYFFGS 567
>gi|218438847|ref|YP_002377176.1| ATPase AAA [Cyanothece sp. PCC 7424]
gi|218171575|gb|ACK70308.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 7424]
Length = 821
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/614 (45%), Positives = 384/614 (62%), Gaps = 57/614 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E + G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVAAGGP 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T GR + L++F +LT A+E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 TT-----GRNKTPTLDEFGSNLTQMAAEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDVPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ ++ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPTVDETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAGSR + T L + +E+R Q + + R
Sbjct: 384 DRYLPDKAIDLIDEAGSRVRL---------ITSQLPPAAKELDKELR--QILKQKDDAVR 432
Query: 559 LKYDDVVASMGD-----TSEI-VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ D + D SEI + S+ + + DEP V ++IA + + W+GIPV ++
Sbjct: 433 AQDFDRAGELRDREMEIKSEIRAIASAKKNEGEGDEPH-VDAEEIANIVASWTGIPVNKL 491
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGK
Sbjct: 492 TETESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPTGVGK 551
Query: 673 TELAKSLAACYFGS 686
TEL K+LAA +FGS
Sbjct: 552 TELTKALAAYFFGS 565
>gi|119488402|ref|ZP_01621575.1| ATP-dependent Clp protease regulatory subunit [Lyngbya sp. PCC
8106]
gi|119455213|gb|EAW36353.1| ATP-dependent Clp protease regulatory subunit [Lyngbya sp. PCC
8106]
Length = 828
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 265/614 (43%), Positives = 379/614 (61%), Gaps = 55/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES--GITIDKAR 138
+FE F+++A+K V+ SQ EA+ LG + V T+ LLLG++ E L S G+T++ R
Sbjct: 1 MFEYFSDKAIKVVMLSQEEARRLGHNFVGTEQLLLGILGEGTSVAAKLLSDRGVTLEDGR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V SI +G F A ++PF+ KRVFE +++ +R G N+I PEH
Sbjct: 61 REVESII------------GRGSGFIPA-EIPFTPRAKRVFEGSLQEARQLGNNYIGPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL ++G A +VL+ ++ L + + + E++ S
Sbjct: 108 ILLGLLQDEEGVAAKVLENFSIERAKLRT-----------------DIIRALGEDAGSTV 150
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+A ++ G R L++F +L+ A+E +DPV+GRE EI+R+IQIL RRTKNNP+L+G
Sbjct: 151 SAGGRASGNKRTVTLDEFGTNLSKLAAEGKLDPVVGREREIERVIQILGRRTKNNPVLVG 210
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIVQ ++P L K++ SLDMG L+AG + RGE E R+ ++ EI
Sbjct: 211 EPGVGKTAIAEGLAQRIVQEDIPELLADKQVFSLDMGSLVAGTRFRGEFEERLKKIVEEI 270
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ G++IL IDE+HT++G+G + +G+ +D +N+LKP+L RGELQC+ +TT DE+R
Sbjct: 271 RSCGNIILVIDEIHTIVGAGAI----EGS-MDAANMLKPALARGELQCLGATTLDEYRKH 325
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ED V IL GLR YE HH T +A+ AA LS RYIS
Sbjct: 326 IERDAALERRFQPVMVGEPSVEDTVEILFGLRSAYEQHHRLTITDQAVYAAATLSDRYIS 385
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR + K +T L + D +E + +
Sbjct: 386 DRFLPDKAIDLIDEAGSRVRV--MNSKPSPETQELKRELSDIIREKEETVKKQDFEKAGE 443
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPA------VVGPDDIAAVASLWSGIPVQQI 612
L+ EI ++ + + + E + +VG +DIA V + W+ IPV ++
Sbjct: 444 LR----------DREIELKEKIEAVTTGKETSKAPLQLMVGEEDIAEVLAAWTSIPVSKL 493
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ +EE L +R+IGQDEAV+A+SRA++R+RVGLK+PNRP A+ +F GPTGVGK
Sbjct: 494 TESESQKLLHMEETLHQRLIGQDEAVSAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGK 553
Query: 673 TELAKSLAACYFGS 686
TEL K+LAA +FGS
Sbjct: 554 TELTKALAAYFFGS 567
>gi|434396958|ref|YP_007130962.1| ATPase AAA-2 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428268055|gb|AFZ33996.1| ATPase AAA-2 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 822
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 280/619 (45%), Positives = 386/619 (62%), Gaps = 65/619 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+ +A G SG
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------VAAG------SG- 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ GR + L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 -----TQGRNKTPTLDEFGSNLTQMASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ ++ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPTVDETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R V + +
Sbjct: 384 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELREV--LKQKDD 429
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASD--------DDEPAVVGPDDIAAVASLWSGI 607
R + D + D + E AS+ DD P VV ++IA + + W+G+
Sbjct: 430 AVRAQDFDRAGELRDREMEIKEEIRSIASNKKTEEDGGDDSP-VVDAEEIAHIVASWTGV 488
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV +IT E L+ +E+ L +R+IGQ++AV AISRA++R+RVGLK+PNRP A+ +F GP
Sbjct: 489 PVNKITESESEKLLHMEDTLHQRIIGQEDAVKAISRAIRRARVGLKNPNRPIASFVFSGP 548
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGKTEL K+LA +FGS
Sbjct: 549 TGVGKTELTKALATYFFGS 567
>gi|158335106|ref|YP_001516278.1| ATP-dependent protease, ATP-binding subunit ClpC [Acaryochloris
marina MBIC11017]
gi|158305347|gb|ABW26964.1| ATP-dependent protease, ATP-binding subunit ClpC [Acaryochloris
marina MBIC11017]
Length = 822
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 279/622 (44%), Positives = 381/622 (61%), Gaps = 72/622 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+A GRT+ L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VSAGGGQGRTKTPTLDEFGANLTNLASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANGDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ +VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RQASNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH E++ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLSILDESLEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYWQEI 544
DRYLPDKAIDL+DEAGSR + EL K K++ + S+ D E+
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRLINSQLPPAAKELDKELRKVLKDKDDAVRSQDFDKAG-EL 441
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW 604
R E+ S +K +A +SE + DD P V +DIA + + W
Sbjct: 442 RD----REMEIKSEIK---AIAQNKKSSE---------ENKDDSPKVT-EEDIAHIVASW 484
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+G+PV ++T E L+ +E+ L +R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F
Sbjct: 485 TGVPVSKLTESESEKLLHMEDTLHQRLIGQDEAVRAISRAIRRARVGLKNPNRPIASFIF 544
Query: 665 CGPTGVGKTELAKSLAACYFGS 686
GPTGVGKTEL K+LA +FGS
Sbjct: 545 SGPTGVGKTELTKALATYFFGS 566
>gi|427708390|ref|YP_007050767.1| ATPase [Nostoc sp. PCC 7107]
gi|427360895|gb|AFY43617.1| ATPase AAA-2 domain protein [Nostoc sp. PCC 7107]
Length = 813
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 272/609 (44%), Positives = 383/609 (62%), Gaps = 54/609 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT A+K ++ +Q EA+ LG + V T+ +LLGLI E E G+T+ +AR
Sbjct: 1 MFEHFTSEAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLSELGVTLKEAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F ++PF+ K +FE + + + G+N+I EH
Sbjct: 61 REVEKII------------GRGSGFVPP-EIPFTPKVKNLFEQSFKEAHGLGHNYINTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL+ LGVD+ L AV R GE + ++
Sbjct: 108 LLLGLTEAGEGVAAKVLQNLGVDL-RLVRTAVMRRLGE---------------DGNV--- 148
Query: 259 TAALKSPGRTR-ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
TA SP R + A LE+F +L+ A E +DPV+GRE EI+R IQIL RRTKNNP+L+
Sbjct: 149 TAGGNSPRRNQQALTLEEFGRNLSKLAQEGKLDPVVGREKEIERAIQILGRRTKNNPVLI 208
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RIV +VP LL+K+++SLDMGL++AG + RG+ E R+ ++ E
Sbjct: 209 GEPGVGKTAIAEGLAQRIVNQDVPELLLNKQVISLDMGLVVAGTRFRGDFEERLKKIMDE 268
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ G+++L IDE+HTL+G+G G +G GLD +N+LKP+L RGELQC+ +TT DE+R
Sbjct: 269 IRSVGNIVLVIDEIHTLVGAG----GTEG-GLDAANILKPALARGELQCLGATTLDEYRK 323
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQP+L+ EPS E+ ++IL GLR YE HH + T A+ AA LS RYI
Sbjct: 324 HIERDAALERRFQPILVGEPSVEETIQILYGLRGAYEQHHKVEITDAAVLAAAQLSDRYI 383
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
SDR+LPDKAIDL+DEAGSR + + +S + Q + +A HE V
Sbjct: 384 SDRFLPDKAIDLIDEAGSRVRL---------RNSQISANKELKRQLVSVTKAKHEAV--- 431
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADER 617
RL+ D + D E+ +E+ L + P VG +DIA + + W+G+PV ++T E
Sbjct: 432 RLQDFDKAGELRD-QELEIEAQLHTEQTISIPT-VGEEDIAQIVASWTGVPVNKLTESES 489
Query: 618 MLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAK 677
LL+ LE+ L +R+IGQ++AV ++SRA++R+RVGLK+PNRP A+ +F GPTGVGKTELAK
Sbjct: 490 ELLLHLEDTLHQRLIGQEQAVTSVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELAK 549
Query: 678 SLAACYFGS 686
+LAA +FG+
Sbjct: 550 ALAAYFFGA 558
>gi|153952834|ref|YP_001393599.1| protein ClpC [Clostridium kluyveri DSM 555]
gi|146345715|gb|EDK32251.1| ClpC [Clostridium kluyveri DSM 555]
Length = 812
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/612 (45%), Positives = 378/612 (61%), Gaps = 52/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+F RFTERA K +I++Q EA++L V T+H+LLG++ ED FL + ITI+ R
Sbjct: 2 MFGRFTERAQKVLIYAQEEAQALQHGYVGTEHILLGVLKEDGIAKNFLNNMNITIETVRS 61
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ ++ +G+ ++P + TKR+ E ++ +R+ +N+I+PEHI
Sbjct: 62 FI------------EEYEGRGEIDLYNKEIPLTPRTKRLLELSLFEARNLNHNYISPEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
L L +G A +L LG D N L + L GE + V N+ S K
Sbjct: 110 LLALIREAEGVAFTILNNLGADFNKLRKQLIDSLSGE-----------QSVSSNN-SKKE 157
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+P L+QF DLT A E +DPVIGRE E QR+++IL RRTKNNP L+G+
Sbjct: 158 NGEPTP------TLDQFGRDLTDMAREGKLDPVIGREKETQRVLEILSRRTKNNPCLIGD 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA +IV A +P L KR+++LD+ ++AG+K RGE E R+ ++ EI+
Sbjct: 212 PGVGKTAIAEGLAEKIVAANIPELLKGKRVVTLDLSSMIAGSKYRGEFEERLKKVMEEIR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
KSG+VILFIDE+HT+IG+G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 272 KSGNVILFIDEIHTIIGAGAAE-----GAIDASNILKPALARGEIQCIGATTIDEYRKYI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+L+ EP++E+AV IL GLR+KYEAHH K T EAI AAV+LS RYI+D
Sbjct: 327 EKDAALERRFQPILVGEPTKEEAVLILKGLRDKYEAHHRVKITDEAIEAAVNLSDRYITD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
RYLPDKAIDL+DEA ++ I Q I PPD E+ +A E RL
Sbjct: 387 RYLPDKAIDLIDEAAAKVRI---------QNLI--APPDLKNLEVELEKATKEKEDSIRL 435
Query: 560 KYDDVVASMGDTSEIV---VESSLPSASDDDEPA--VVGPDDIAAVASLWSGIPVQQITA 614
+ + A + D + + +E + E + +VG + IA+V S W+ +PV+++T
Sbjct: 436 QDFEKAAKLRDIEKELKDKLEGLKTNWKTKKEVSTLLVGEEKIASVVSQWTNVPVEKLTE 495
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ LE+ L KRVIGQDEAV +I+RAV+RSRVGLKDP RP + +F GPTGVGKTE
Sbjct: 496 KELQRLLKLEDILHKRVIGQDEAVKSIARAVRRSRVGLKDPKRPIGSFIFLGPTGVGKTE 555
Query: 675 LAKSLAACYFGS 686
L+K+LA FG
Sbjct: 556 LSKALAEAMFGD 567
>gi|434403231|ref|YP_007146116.1| ATPase with chaperone activity, ATP-binding subunit
[Cylindrospermum stagnale PCC 7417]
gi|428257486|gb|AFZ23436.1| ATPase with chaperone activity, ATP-binding subunit
[Cylindrospermum stagnale PCC 7417]
Length = 823
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 279/618 (45%), Positives = 384/618 (62%), Gaps = 64/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E S G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVSPGGP 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ GRT+ L++F +LT A + +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 S------GRTKTPTLDEFGSNLTQMAVDNKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLASRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS + + IL GLRE+YE HH K + EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVAETIEILFGLRERYEQHHKLKISDEALEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRFLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QILKEKDD 428
Query: 556 GSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
R + D + D +EI + +S ++ D VV +DIA + + W+G+P
Sbjct: 429 AVRSQDFDRAGELRDREMEIKAEIRAIAQSKTNASGGDGLEPVVTEEDIAHIVASWTGVP 488
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E+ L +R+IGQD+AV A+SRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 489 VNKLTESESEKLLHMEDTLHQRLIGQDDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPT 548
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAKSLA+ +FGS
Sbjct: 549 GVGKTELAKSLASYFFGS 566
>gi|219853499|ref|YP_002470621.1| hypothetical protein CKR_0156 [Clostridium kluyveri NBRC 12016]
gi|219567223|dbj|BAH05207.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 816
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/612 (45%), Positives = 378/612 (61%), Gaps = 52/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+F RFTERA K +I++Q EA++L V T+H+LLG++ ED FL + ITI+ R
Sbjct: 6 MFGRFTERAQKVLIYAQEEAQALQHGYVGTEHILLGVLKEDGIAKNFLNNMNITIETVRS 65
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ ++ +G+ ++P + TKR+ E ++ +R+ +N+I+PEHI
Sbjct: 66 FI------------EEYEGRGEIDLYNKEIPLTPRTKRLLELSLFEARNLNHNYISPEHI 113
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
L L +G A +L LG D N L + L GE + V N+ S K
Sbjct: 114 LLALIREAEGVAFTILNNLGADFNKLRKQLIDSLSGE-----------QSVSSNN-SKKE 161
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+P L+QF DLT A E +DPVIGRE E QR+++IL RRTKNNP L+G+
Sbjct: 162 NGEPTP------TLDQFGRDLTDMAREGKLDPVIGREKETQRVLEILSRRTKNNPCLIGD 215
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA +IV A +P L KR+++LD+ ++AG+K RGE E R+ ++ EI+
Sbjct: 216 PGVGKTAIAEGLAEKIVAANIPELLKGKRVVTLDLSSMIAGSKYRGEFEERLKKVMEEIR 275
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
KSG+VILFIDE+HT+IG+G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 276 KSGNVILFIDEIHTIIGAGAAE-----GAIDASNILKPALARGEIQCIGATTIDEYRKYI 330
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+L+ EP++E+AV IL GLR+KYEAHH K T EAI AAV+LS RYI+D
Sbjct: 331 EKDAALERRFQPILVGEPTKEEAVLILKGLRDKYEAHHRVKITDEAIEAAVNLSDRYITD 390
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
RYLPDKAIDL+DEA ++ I Q I PPD E+ +A E RL
Sbjct: 391 RYLPDKAIDLIDEAAAKVRI---------QNLI--APPDLKNLEVELEKATKEKEDSIRL 439
Query: 560 KYDDVVASMGDTSEIV---VESSLPSASDDDEPA--VVGPDDIAAVASLWSGIPVQQITA 614
+ + A + D + + +E + E + +VG + IA+V S W+ +PV+++T
Sbjct: 440 QDFEKAAKLRDIEKELKDKLEGLKTNWKTKKEVSTLLVGEEKIASVVSQWTNVPVEKLTE 499
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ LE+ L KRVIGQDEAV +I+RAV+RSRVGLKDP RP + +F GPTGVGKTE
Sbjct: 500 KELQRLLKLEDILHKRVIGQDEAVKSIARAVRRSRVGLKDPKRPIGSFIFLGPTGVGKTE 559
Query: 675 LAKSLAACYFGS 686
L+K+LA FG
Sbjct: 560 LSKALAEAMFGD 571
>gi|282896301|ref|ZP_06304323.1| UvrB/UvrC protein [Raphidiopsis brookii D9]
gi|281198797|gb|EFA73676.1| UvrB/UvrC protein [Raphidiopsis brookii D9]
Length = 823
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 280/620 (45%), Positives = 389/620 (62%), Gaps = 68/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E + G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVTPGG- 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S GRT+ L++F +LT A + +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 153 -----SSGRTKTPTLDEFGSNLTQMAVDNKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLASRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLR++YEAHH K + EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVDETIEILYGLRDRYEAHHKLKISDEALVAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDLVDEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRYLPDKAIDLVDEAGSRVRL------------INSQLPPAAKELDKELR--QILKEKDD 428
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDD---------EPAVVGPDDIAAVASLWSG 606
R + D + D E+ +++ + S + + EP VV +DIA + + W+G
Sbjct: 429 AVRSQDFDRAGELRD-REMEIKAEIRSIAQNKANGTSAEGVEP-VVTEEDIAHIVASWTG 486
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV ++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F G
Sbjct: 487 VPVNKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSG 546
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAKSLA+ +FGS
Sbjct: 547 PTGVGKTELAKSLASYFFGS 566
>gi|434393419|ref|YP_007128366.1| ATPase AAA-2 domain protein [Gloeocapsa sp. PCC 7428]
gi|428265260|gb|AFZ31206.1| ATPase AAA-2 domain protein [Gloeocapsa sp. PCC 7428]
Length = 825
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/620 (44%), Positives = 386/620 (62%), Gaps = 66/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+A GRT+ L++F +LT A+E +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 149 SAGSSQSGRTKTPTLDEFGSNLTQMAAEGKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLASRIANKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLRE+YE HH K + EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVDETIEILYGLRERYEQHHKLKISDEALVAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 384 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QVLKEKDD 429
Query: 556 GSRLKYDDVVASMGD-----TSEI--VVESSLPSA--SDDDEPAVVGPDDIAAVASLWSG 606
R + D + D +EI + +S S ++D P VV +DIA + + W+G
Sbjct: 430 AVRSQDFDRAGELRDREMEIKAEIRAIAQSKTTSTREGENDSP-VVTEEDIAQIVASWTG 488
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV ++T E L+ +E+ L +R+IGQ++AV A+S+A++R+RVGLK+PNRP A+ +F G
Sbjct: 489 VPVNKLTETESEKLLHMEDTLHQRLIGQEDAVKAVSKAIRRARVGLKNPNRPIASFVFSG 548
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTEL K+LAA +FGS
Sbjct: 549 PTGVGKTELTKALAAYFFGS 568
>gi|443329502|ref|ZP_21058087.1| ATPase with chaperone activity, ATP-binding subunit [Xenococcus sp.
PCC 7305]
gi|442790840|gb|ELS00342.1| ATPase with chaperone activity, ATP-binding subunit [Xenococcus sp.
PCC 7305]
Length = 822
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/618 (44%), Positives = 383/618 (61%), Gaps = 63/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + + R+ GE A E + G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QIIRMLGETA----EVATGGG--------- 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S GR + L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 -----SSGRNKTPTLDEFGSNLTQMASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIANQDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K EA+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R + + E
Sbjct: 384 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELRGI--LKEKDD 429
Query: 556 GSRLKYDDVVASMGDTSEIVVES--SLPSASDDDEPA-----VVGPDDIAAVASLWSGIP 608
R + D S+ D + E ++ SA +E V ++IA + + W+G+P
Sbjct: 430 AVRSQDFDKAGSLRDREMEIKEQIRNIASAKKSEEDTETNSPFVDSEEIAHIVASWTGVP 489
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E+ L +R+IGQ++AV AISRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 490 VNKLTETESEKLLHMEDTLHQRIIGQEDAVKAISRAIRRARVGLKNPNRPIASFVFSGPT 549
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL K+LA +FGS
Sbjct: 550 GVGKTELTKALATYFFGS 567
>gi|116073045|ref|ZP_01470307.1| ATPase [Synechococcus sp. RS9916]
gi|116068350|gb|EAU74102.1| ATPase [Synechococcus sp. RS9916]
Length = 859
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 279/632 (44%), Positives = 389/632 (61%), Gaps = 60/632 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+ +
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE---------------VGAG 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ + G T+ L++F +LT A E +DPV+GR+ EI R+IQIL RRTKNNP+L+G
Sbjct: 152 SSGGGAKGSTKTPTLDEFGSNLTQLAGEGKLDPVVGRQHEIDRVIQILGRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAIAEGLAQRIQTGDIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 272 KAAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV + EPS D + IL GLRE+YE HH K T EA+ AA L RYIS
Sbjct: 327 IERDAALERRFQPVNVGEPSIPDTIEILRGLRERYEQHHRLKITDEALEAAATLGDRYIS 386
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDY 540
DR+LPDKAIDL+DEAGSR + EL +KE++ + +K +
Sbjct: 387 DRFLPDKAIDLIDEAGSRVRLLNSKLPPAAKEVDKELRSVQKEKEEAVREQDFTKAGELR 446
Query: 541 WQEIRTVQAMHEVVQGSRLKYD-----DVVASMGDTSEIVVESSLPSA-SDDDEPAVVGP 594
+E+ + + ++Q SR + A G+++ V + PS S VV
Sbjct: 447 DKEVELREQIRSLLQNSRDGLEAPAADADSAPAGESTVTSVSADAPSGESATLTTPVVDE 506
Query: 595 DDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKD 654
+DIA + + W+G+PVQ++T E + L+ +EE L KR+IGQDEAV A+S+A++R+RVGLK+
Sbjct: 507 EDIAQIVASWTGVPVQKLTESESVKLLNMEETLHKRLIGQDEAVKAVSKAIRRARVGLKN 566
Query: 655 PNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
PNRP A+ +F GPTGVGKTEL K+LA +FGS
Sbjct: 567 PNRPIASFIFSGPTGVGKTELTKALATYFFGS 598
>gi|428770031|ref|YP_007161821.1| ATPase [Cyanobacterium aponinum PCC 10605]
gi|428684310|gb|AFZ53777.1| ATPase AAA-2 domain protein [Cyanobacterium aponinum PCC 10605]
Length = 822
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 280/618 (45%), Positives = 385/618 (62%), Gaps = 63/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + + L G + A GV S S K
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLGKVRTQVIRML-------GETETTAVGVGGGSRSNK 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T L++F +LT A + +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 161 T-----------PTLDEFGSNLTVLAVDGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 210 EPGVGKTAIAEGLAQRIANKDVPDLLEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 270 RQAGNVILVIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEYRKH 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D ALARRFQPV++ EPS E+ + IL GLREKYE HH K EA+ AA LS RYIS
Sbjct: 325 IERDAALARRFQPVMVGEPSVEETIEILFGLREKYEQHHKLKIADEALAAAAKLSDRYIS 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DRYLPDKAIDL+DEAGSR + PP+ + QE+R Q + E +
Sbjct: 385 DRYLPDKAIDLIDEAGSRVRL-----------LNSQLPPEAKELDQELR--QVLKEKDEA 431
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPSASD--------DDEPAVVGPDDIAAVASLWSGIP 608
R + D + D E+ +++ + S +D +D P +V ++IA + + W+G+P
Sbjct: 432 VRSQDFDKAGELRD-REMEIKAEIRSLADQKKKSADINDNP-IVDEEEIAHIVASWTGVP 489
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
VQ++T E L+ +EE L +R+IGQ++AV AISRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 490 VQKLTESEADKLLHMEETLHQRIIGQEDAVKAISRAIRRARVGLKNPNRPIASFIFSGPT 549
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL K+LA +FGS
Sbjct: 550 GVGKTELTKALATYFFGS 567
>gi|282900556|ref|ZP_06308498.1| UvrB/UvrC protein [Cylindrospermopsis raciborskii CS-505]
gi|281194356|gb|EFA69311.1| UvrB/UvrC protein [Cylindrospermopsis raciborskii CS-505]
Length = 823
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 280/620 (45%), Positives = 389/620 (62%), Gaps = 68/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E + G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVTPGG- 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S GRT+ L++F +LT A + +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 153 -----SSGRTKTPTLDEFGSNLTQMAVDNKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLASRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLR++YEAHH K + EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVDETIEILYGLRDRYEAHHKLKISDEALVAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDLVDEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRYLPDKAIDLVDEAGSRVRL------------INSQLPPAAKELDKELR--QILKEKDD 428
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDD---------EPAVVGPDDIAAVASLWSG 606
R + D + D E+ +++ + S + + EP VV +DIA + + W+G
Sbjct: 429 AVRSQDFDRAGELRD-REMEIKAEIRSIAQNKANGTSAEGVEP-VVTEEDIAHIVASWTG 486
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV ++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F G
Sbjct: 487 VPVNKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSG 546
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAKSLA+ +FGS
Sbjct: 547 PTGVGKTELAKSLASYFFGS 566
>gi|359457125|ref|ZP_09245688.1| ATP-dependent protease, ATP-binding subunit ClpC [Acaryochloris sp.
CCMEE 5410]
Length = 822
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 275/618 (44%), Positives = 381/618 (61%), Gaps = 64/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+A GRT+ L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VSAGGGQGRTKTPTLDEFGANLTNLASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANGDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ +VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RQASNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLRE+YE HH E++ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVDETIEILYGLRERYEQHHKLSILDESLEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R V + +
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELRKV--LKDKDD 428
Query: 556 GSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
R + D + D SEI + ++ S + D+ V +DIA + + W+G+P
Sbjct: 429 AVRSQDFDKAGELRDREMEIKSEIKAIAQNKKSSEDNKDDSPKVTEEDIAHIVASWTGVP 488
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E+ L +R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 489 VSKLTESESEKLLHMEDTLHQRLIGQDEAVRAISRAIRRARVGLKNPNRPIASFIFSGPT 548
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL K+LA +FGS
Sbjct: 549 GVGKTELTKALATYFFGS 566
>gi|260435541|ref|ZP_05789511.1| chaperone protein ClpB 1 [Synechococcus sp. WH 8109]
gi|260413415|gb|EEX06711.1| chaperone protein ClpB 1 [Synechococcus sp. WH 8109]
Length = 846
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 275/626 (43%), Positives = 388/626 (61%), Gaps = 60/626 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+ ++
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE---------------VTAG 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ G T+ L++F +LT A+E +DPV+GR EI R+IQIL RRTKNNP+L+G
Sbjct: 152 GGGGGAKGSTKTPTLDEFGNNLTQLATEAKLDPVVGRHNEIDRVIQILGRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAIAEGLAQRIQQGDIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 272 KAAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV + EPS +D + IL GLRE+YE HH K T +A+ AA L RYIS
Sbjct: 327 IERDAALERRFQPVNVGEPSIDDTIEILRGLRERYEQHHRLKITDDALVAAATLGDRYIS 386
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDY 540
DR+LPDKAIDL+DEAGSR + EL +K+++ + +K +
Sbjct: 387 DRFLPDKAIDLIDEAGSRVRLLNSKLPPAAKEVDKELRSVQKQKEDAVRDQDFTKAGELR 446
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
+E+ + + ++Q ++ D+V A D + E+ +S D +V +DIA +
Sbjct: 447 EKEVELREQIRSLLQANK---DEVKA---DATSGSGETVSAESSASDSSPMVNEEDIAQI 500
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+G+PVQ++T E + L+ +EE L KR+IGQDEAV A+S+A++R+RVGLK+PNRP A
Sbjct: 501 VASWTGVPVQKLTESESVKLLNMEETLHKRLIGQDEAVKAVSKAIRRARVGLKNPNRPIA 560
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGS 686
+ +F GPTGVGKTEL K+LA +FGS
Sbjct: 561 SFIFSGPTGVGKTELTKALATYFFGS 586
>gi|317970390|ref|ZP_07971780.1| ATPase [Synechococcus sp. CB0205]
Length = 850
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 277/626 (44%), Positives = 388/626 (61%), Gaps = 54/626 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F + ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFVAVVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+ V G
Sbjct: 109 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE----------VAGGGGGGG 157
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ K+P L++F +LT +AS+ +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 158 KGSTKTP------TLDEFGSNLTQQASDGKLDPVVGRQHEIERVIQILGRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAIAEGLAQRINSGDVPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 272 RGAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV + EPS ED + IL GL+E+YE+HH EA+ AA L RYIS
Sbjct: 327 IERDAALERRFQPVQVGEPSVEDTIEILRGLKERYESHHRLTIADEALVAAATLGDRYIS 386
Query: 499 DRYLPDKAIDLVDEAGSRAHI-----------------ELFKRKKEQ-QTCILSKPPDDY 540
DR+LPDKAIDL+DEAGSR + E+ K+K E + +K +
Sbjct: 387 DRFLPDKAIDLIDEAGSRVRLMNSKLPSAAKEVDKQLREIEKQKDEAVREQDFTKAGELR 446
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
+E+ + + ++Q + +S G V + P+A+ + +V +DIA +
Sbjct: 447 DKEVELREQIRSILQNRNEEKPAAESSEGSADTPVAVAEAPAAAVSESGPMVTEEDIAQI 506
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+G+PVQ++T E L+ +EE L +R+IGQDEAV A+SRA++R+RVGLK+PNRP A
Sbjct: 507 VASWTGVPVQKLTESESAKLLNMEETLHQRLIGQDEAVKAVSRAIRRARVGLKNPNRPIA 566
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGS 686
+ +F GPTGVGKTEL KSLAA +FGS
Sbjct: 567 SFIFSGPTGVGKTELTKSLAAYFFGS 592
>gi|428219225|ref|YP_007103690.1| ATPase [Pseudanabaena sp. PCC 7367]
gi|427991007|gb|AFY71262.1| ATPase AAA-2 domain protein [Pseudanabaena sp. PCC 7367]
Length = 831
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 281/618 (45%), Positives = 382/618 (61%), Gaps = 64/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+ PS
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAEV---PSGG----------- 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S GRT+ L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 153 -----SQGRTKTPTLDEFGSNLTQMASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRINDTDVPDILQEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + +VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSASNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV + EPS + + IL GLRE+YE HH K + +A+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVYVGEPSVAETIEILYGLRERYEQHHKLKISDDALEAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E +
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDKELR--QVVKEKEE 428
Query: 556 GSRLKYDDVVASMGDTS-EIVVE-SSLPSASDDDEPA-----VVGPDDIAAVASLWSGIP 608
+R + D + D EI E S+ A +E VV +DIA + S W+G+P
Sbjct: 429 AARAQEFDKAGELRDREMEIKQEIRSITQAKKSEETGEEVSPVVDEEDIAYIVSSWTGVP 488
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E+ L +R+IGQ+EAV AISRA++R+RVGLK P+RP A+ +F GPT
Sbjct: 489 VSKLTESESAKLMQMEDTLHQRIIGQEEAVKAISRAIRRARVGLKSPDRPIASFIFSGPT 548
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL K+LA +FGS
Sbjct: 549 GVGKTELTKALATYFFGS 566
>gi|78184962|ref|YP_377397.1| ATPase [Synechococcus sp. CC9902]
gi|78169256|gb|ABB26353.1| ATPase [Synechococcus sp. CC9902]
Length = 843
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 281/628 (44%), Positives = 384/628 (61%), Gaps = 67/628 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+ ++
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE---------------VTAG 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ G T+ L++F +LT A+E +DPV+GR EI R+IQIL RRTKNNP+L+G
Sbjct: 152 GGGGGAKGSTKTPTLDEFGTNLTQMATESKLDPVVGRYNEIDRVIQILGRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAIAEGLAQRIQQGDIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 272 KSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV + EPS +D + IL GLRE+YE HH K T EA+ AA L RYIS
Sbjct: 327 IERDAALERRFQPVNVGEPSIDDTIEILRGLRERYEQHHRLKITDEALVAAATLGDRYIS 386
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE---- 552
DR+LPDKAIDL+DEAGSR + L K PP+ + +E+RTVQ E
Sbjct: 387 DRFLPDKAIDLIDEAGSR--VRLMNSK---------LPPEAKEVDKELRTVQKDKEDAVR 435
Query: 553 ---VVQGSRLKYDDV-----VASMGDTSEIVVESSLPSASDDDEPAV------VGPDDIA 598
+ L+ +V + ++ TS E S PAV V +DIA
Sbjct: 436 DQDFAKAGELREKEVELREKIRALMQTSRSSSEEGSSDESAVSTPAVVDTTPMVSEEDIA 495
Query: 599 AVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRP 658
+ + W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+S+A++R+RVGLK+PNRP
Sbjct: 496 HIVASWTGVPVQKLTESESVKLLNMEETLHQRLIGQDEAVKAVSKAIRRARVGLKNPNRP 555
Query: 659 TAAMLFCGPTGVGKTELAKSLAACYFGS 686
A+ +F GPTGVGKTEL K+LA +FGS
Sbjct: 556 IASFIFSGPTGVGKTELTKALATYFFGS 583
>gi|443311631|ref|ZP_21041257.1| ATPase with chaperone activity, ATP-binding subunit [Synechocystis
sp. PCC 7509]
gi|442778360|gb|ELR88627.1| ATPase with chaperone activity, ATP-binding subunit [Synechocystis
sp. PCC 7509]
Length = 829
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 267/612 (43%), Positives = 379/612 (61%), Gaps = 51/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ R
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLRSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDA--RIEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 110 LGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE-------------------VN 149
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
A GRT+ L++F +LT A++ +DPV+GR EI+R+IQIL RRTKNNP+L+GE
Sbjct: 150 AGSPSGRTKTPTLDEFGSNLTQMAADGKLDPVVGRAKEIERVIQILGRRTKNNPVLIGEP 209
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 210 GVGKTAIAEGLASRIANKDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEIRS 269
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 270 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 324
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV++ EPS ++ + IL GLRE+YE HH K + EA+ AA LS RYISDR
Sbjct: 325 RDAALERRFQPVMVGEPSVDETIEILFGLRERYEQHHKLKISDEALFAAAKLSDRYISDR 384
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRL 559
+LPDKAIDL+DEAGSR + L D +E+R V + + V+G
Sbjct: 385 FLPDKAIDLMDEAGSRVRL---------INSALPPAAKDLDKELRKVLKEKDDAVRGQDF 435
Query: 560 KY-----DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITA 614
D + G+ + + + D ++ VV +DIA + + W+G+PV ++T
Sbjct: 436 GKAGELRDREMEIKGEIRALSQNKANTTRPDGEDAPVVTEEDIAHIVASWTGVPVSKLTE 495
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ +E+ L +R+IGQ+EAV A+S+A++R+RVGLK+PNRP A+ +F GPTGVGKTE
Sbjct: 496 SESEKLMHMEDTLHQRLIGQEEAVRAVSKAIRRARVGLKNPNRPIASFVFSGPTGVGKTE 555
Query: 675 LAKSLAACYFGS 686
L KSLAA +FGS
Sbjct: 556 LTKSLAAYFFGS 567
>gi|427420614|ref|ZP_18910797.1| ATPase with chaperone activity, ATP-binding subunit [Leptolyngbya
sp. PCC 7375]
gi|425756491|gb|EKU97345.1| ATPase with chaperone activity, ATP-binding subunit [Leptolyngbya
sp. PCC 7375]
Length = 822
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 280/619 (45%), Positives = 381/619 (61%), Gaps = 66/619 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E S G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVSTGG- 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S GRT+ L++F +LT ASE +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 153 -----SQGRTKTPTLDEFGSNLTQMASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANGDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + +VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAANVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLR++YE HH K E++ AA L+ RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVEETIEILHGLRDRYEQHHKLKILDESLEAAAKLADRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAGSR + I S+ P + +E+R+V + +
Sbjct: 383 DRFLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDRELRSV--LKDKDN 428
Query: 556 GSRLKYDDVVASMGDTS-EIVVE-------SSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
R + D + D EI E A D P V +DIA + + W+G+
Sbjct: 429 AVRSQDFDKAGELRDREMEIKAEIRAIAQSKRTDEAGSSDSPEVT-EEDIAHIVASWTGV 487
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T E L+ +E+ L +RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GP
Sbjct: 488 PVNKLTETESEKLLHMEDTLHQRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFVFSGP 547
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGKTEL K+LAA +FGS
Sbjct: 548 TGVGKTELTKALAAYFFGS 566
>gi|352093666|ref|ZP_08954837.1| ATPase AAA-2 domain protein [Synechococcus sp. WH 8016]
gi|351680006|gb|EHA63138.1| ATPase AAA-2 domain protein [Synechococcus sp. WH 8016]
Length = 860
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 282/634 (44%), Positives = 388/634 (61%), Gaps = 63/634 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+ V G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE----------VGAGGGGGA 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ K+P L++F +LT A+E +DPV+GR EI R+IQIL RRTKNNP+L+G
Sbjct: 157 KGSTKTP------TLDEFGTNLTQLATESKLDPVVGRHKEIDRVIQILGRRTKNNPVLIG 210
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 211 EPGVGKTAIAEGLAQRIQQGDIPDILEEKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 270
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 271 KSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 325
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV + EPS D + IL GLRE+YE HH K T A++AA L RYIS
Sbjct: 326 IERDAALERRFQPVTVGEPSIPDTIEILRGLRERYEQHHRLKITDAALDAAATLGDRYIS 385
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDY 540
DR+LPDKAIDL+DEAGSR + EL +KE++ + + +
Sbjct: 386 DRFLPDKAIDLIDEAGSRVRLLNSKLPPAAKEVDKELRAVQKEKEDAVRDQDFGRAGELR 445
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA--------VV 592
+E+ + + ++Q SR + G TSE V +L S S + A +V
Sbjct: 446 DKEVELREKIRTLLQSSREESPVNSGDTGQTSEGAVGEALSSDSAEGSTAQPQLLTTPIV 505
Query: 593 GPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGL 652
+DIA + + W+G+PVQ++T E + L+ +EE L KR+IGQDEAV A+S+A++R+RVGL
Sbjct: 506 DEEDIAHIVASWTGVPVQKLTESESVKLLNMEETLHKRLIGQDEAVKAVSKAIRRARVGL 565
Query: 653 KDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
K+PNRP A+ +F GPTGVGKTEL K+LAA +FGS
Sbjct: 566 KNPNRPIASFIFSGPTGVGKTELTKALAAYFFGS 599
>gi|254422552|ref|ZP_05036270.1| ATPase, AAA family [Synechococcus sp. PCC 7335]
gi|196190041|gb|EDX85005.1| ATPase, AAA family [Synechococcus sp. PCC 7335]
Length = 826
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 274/617 (44%), Positives = 382/617 (61%), Gaps = 59/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+ +SG
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE---------------VSGS 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T+ S GRT+ L++F +LT A++ +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 152 TS---SQGRTKTPTLDEFGANLTQMAADGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIGNNDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMEEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + +VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RAAANVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLR++YE HH K +A++AA LS RYIS
Sbjct: 324 IERDAALERRFQPVMVGEPSVDETIEILHGLRDRYEQHHKLKILDDALDAAAKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAGSR + L + +E+R Q + + R
Sbjct: 384 DRYLPDKAIDLIDEAGSRVRL---------LNSQLPPAAKELDKELR--QVLKDKDNAVR 432
Query: 559 LKYDDVVASMGD-----TSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIPV 609
+ D + D +EI + A D ++ P +DIA + + W+G+PV
Sbjct: 433 SQDFDKAGELRDREMEIKTEIRTIAQTKKAEDAEDAKADSPKVTEEDIAHIVASWTGVPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E+ L +R+IGQDEAV AISRA++R+RVGLK PNRP A+ +F GPTG
Sbjct: 493 NKLTESESEKLLHMEDVLHQRLIGQDEAVRAISRAIRRARVGLKSPNRPIASFVFSGPTG 552
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELAKSLA +FG+
Sbjct: 553 VGKTELAKSLATYFFGA 569
>gi|56751262|ref|YP_171963.1| ATP-dependent Clp protease regulatory subunit ClpC [Synechococcus
elongatus PCC 6301]
gi|56686221|dbj|BAD79443.1| ATP-dependent Clp protease regulatory subunit ClpC [Synechococcus
elongatus PCC 6301]
Length = 839
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 280/619 (45%), Positives = 388/619 (62%), Gaps = 63/619 (10%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKA 137
++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + A
Sbjct: 15 AMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDA 74
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F AA++PF+ KRV E ++E +R G+N+I E
Sbjct: 75 RIEVEKII------------GRGSGFV-AAEIPFTPRAKRVLELSLEEARQLGHNYIGTE 121
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LGVD++ + V R+ GE A E S G
Sbjct: 122 HLLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVSTGG 167
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
GRT+ L++F +LT +A++ +DPV+GR+ EI+R+IQIL RRTKNNP+L+
Sbjct: 168 ------GQGRTKTPTLDEFGSNLTQQAADGKLDPVVGRQKEIERVIQILGRRTKNNPVLI 221
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ E
Sbjct: 222 GEPGVGKTAIAEGLAQRIATGDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDE 281
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ +GDVIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 282 IRSAGDVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRK 336
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQPV++ EPS +D + IL GLRE+YE HH K EA+ AA L+ RYI
Sbjct: 337 HIERDAALERRFQPVMVGEPSVDDTIEILRGLRERYEQHHKLKIADEALEAAAKLADRYI 396
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
SDR+LPDKAIDL+DEAGSR + L + +E+R Q + +
Sbjct: 397 SDRFLPDKAIDLIDEAGSRVRL---------MNSQLPPAAKELDKELR--QVLKDKDDAV 445
Query: 558 RLKYDDVVASMGDTSEIVVESSLPS----------ASDDDEPAVVGPDDIAAVASLWSGI 607
R + D + D E+ +++ + S +S DD P +V +DIA + + W+G+
Sbjct: 446 RSQDFDKAGELRD-REMEIKTQIRSIAQSKKADGTSSTDDSP-IVTEEDIAHIVASWTGV 503
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GP
Sbjct: 504 PVNKLTESESTKLLNMEETLHSRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASFIFSGP 563
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGKTEL K+LAA +FGS
Sbjct: 564 TGVGKTELTKALAAYFFGS 582
>gi|427734429|ref|YP_007053973.1| chaperone ATPase [Rivularia sp. PCC 7116]
gi|427369470|gb|AFY53426.1| ATPase with chaperone activity, ATP-binding subunit [Rivularia sp.
PCC 7116]
Length = 831
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 276/622 (44%), Positives = 383/622 (61%), Gaps = 72/622 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A GR + L++F +LT A + +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VTATGQSGRNKTPTLDEFGSNLTQMALDGKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIGNKDVPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLR++YE HH K + EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVDETIEILYGLRDRYEQHHKLKISDEAVLAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYWQEI 544
DRYLPDKAIDL+DEAGSR + EL K KE+ + S+ D E+
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRLINSQLPPAAKELDKELRKILKEKDDAVRSQDFDKAG-EL 441
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW 604
R D + + I + S ++ +EP VV +DIA + + W
Sbjct: 442 R----------------DREMEIKAEIRAIAQSKAGTSGANGEEP-VVTEEDIAHIVASW 484
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+G+PV ++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F
Sbjct: 485 TGVPVNKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVF 544
Query: 665 CGPTGVGKTELAKSLAACYFGS 686
GPTGVGKTELAKSLA+ +FGS
Sbjct: 545 SGPTGVGKTELAKSLASYFFGS 566
>gi|116072469|ref|ZP_01469736.1| ATPase [Synechococcus sp. BL107]
gi|116064991|gb|EAU70750.1| ATPase [Synechococcus sp. BL107]
Length = 843
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 281/628 (44%), Positives = 385/628 (61%), Gaps = 67/628 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+ ++
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE---------------VTAG 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ G T+ L++F +LT A+E +DPV+GR EI R+IQIL RRTKNNP+L+G
Sbjct: 152 GGGSGAKGSTKTPTLDEFGNNLTQLATESKLDPVVGRHNEIDRVIQILGRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAIAEGLAQRIQQGDIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 272 KSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV + EPS +D + IL GLRE+YE HH K T EA+ AA L RYIS
Sbjct: 327 IERDAALERRFQPVNVGEPSIDDTIEILRGLRERYEQHHRLKITDEALVAAATLGDRYIS 386
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE---- 552
DR+LPDKAIDL+DEAGSR + L K PP+ + +E+RTVQ E
Sbjct: 387 DRFLPDKAIDLIDEAGSR--VRLMNSK---------LPPEAKEVDKELRTVQKDKEDAVR 435
Query: 553 ---VVQGSRLKYDDV-----VASMGDTSEIVVESSLPSASDDDEPAV------VGPDDIA 598
+ L+ +V + ++ TS E + S PAV V +DIA
Sbjct: 436 DQDFAKAGELREKEVELREKIRALMQTSRSSSEEASSDESAVTTPAVVDTTPMVSEEDIA 495
Query: 599 AVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRP 658
+ + W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+S+A++R+RVGLK+PNRP
Sbjct: 496 HIVASWTGVPVQKLTESESVKLLNMEETLHQRLIGQDEAVKAVSKAIRRARVGLKNPNRP 555
Query: 659 TAAMLFCGPTGVGKTELAKSLAACYFGS 686
A+ +F GPTGVGKTEL K+LA +FGS
Sbjct: 556 IASFIFSGPTGVGKTELTKALATYFFGS 583
>gi|434395188|ref|YP_007130135.1| ATPase AAA-2 domain protein [Gloeocapsa sp. PCC 7428]
gi|428267029|gb|AFZ32975.1| ATPase AAA-2 domain protein [Gloeocapsa sp. PCC 7428]
Length = 822
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 274/618 (44%), Positives = 384/618 (62%), Gaps = 64/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT++A+K ++ SQ E + LG ++V T+ +LLGLI E E G+++ AR
Sbjct: 1 MFEYFTDKAIKVIMLSQEETRRLGHNLVGTEQILLGLIGEGTGVAAKVLTELGVSLQDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRVFE A+ +R G N+I EH
Sbjct: 61 TEVEKII------------GRGNRFVPA-ELPFTPKVKRVFEQALAEARQLGNNYIDTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL DG A +VL LG+ + AV + GE+A +++ G + SG+
Sbjct: 108 ILLGLLREGDGVAAKVLSNLGIHPEQIRT-AVIKKHGEVA------AVSVGNTDRR-SGR 159
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
TA ++ + L++F +LT A+E +DPV+GRE EI+R IQIL RRTKNNP+L+G
Sbjct: 160 TA-------SKTATLDEFSTNLTKLAAEGKLDPVVGREKEIERAIQILGRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV VP L ++++SLDMGLL+AG + RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAIAEGLAQRIVNQNVPDILEDRQVVSLDMGLLIAGTRFRGDFEERIKAIMEEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G++IL IDE+HTLIG+G G +G G+D +N+LKP+L RGELQC+ +TT DE+R
Sbjct: 273 RAAGNIILVIDEIHTLIGTG----GVEG-GMDAANILKPALARGELQCLGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+++ EPS ++ + IL GLR YE HH K T A+ AA LS RYIS
Sbjct: 328 IERDAALERRFQPIMVGEPSVDETIEILHGLRATYEQHHRVKITDVALEAAAKLSDRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R + Q + T + E+VQ SR
Sbjct: 388 DRFLPDKAIDLIDEAGSRV------RLRNSQASV-------------TSEVKRELVQVSR 428
Query: 559 LKYDDVVASMGDTS------EIVVESSLPSASD----DDEPAVVGPDDIAAVASLWSGIP 608
K V A D + E+ +E+ + + ++ D VV +DIA + + W+G+P
Sbjct: 429 AKEAAVRAQDFDKAGQLRDRELELEAQIKAIAENQNKDVNTPVVDEEDIAQIVASWTGVP 488
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E LL+ LE+ L +R+IGQ EAV A+SRA++R+RVGLK P+RP A+ +F GPT
Sbjct: 489 VNKLTETESELLLHLEDTLHQRIIGQQEAVTAVSRAIRRARVGLKSPDRPIASFIFSGPT 548
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL K+LA+ +FGS
Sbjct: 549 GVGKTELTKALASYFFGS 566
>gi|428207100|ref|YP_007091453.1| ATPase [Chroococcidiopsis thermalis PCC 7203]
gi|428009021|gb|AFY87584.1| ATPase AAA-2 domain protein [Chroococcidiopsis thermalis PCC 7203]
Length = 828
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 276/621 (44%), Positives = 389/621 (62%), Gaps = 64/621 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+FE FT++A+KAV+ +Q EA+ LG ++V T+ +LLGLI E E G+T+ AR
Sbjct: 1 MFEHFTDKAIKAVMLAQEEARRLGHNLVGTEQILLGLIGEGTGIAAKVLTELGVTLQAAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I N +P + A++PF+ KRVFE A +R+ G+N+I PEH
Sbjct: 61 AEVEKIIGRGN-----------RP--AMAEIPFTPKVKRVFEQAFTEARTLGHNYIGPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G AG+VL+ LGVD++ + +L GE+A ++A R+ G+
Sbjct: 108 VLLGLLQEGEGVAGKVLQNLGVDLDEARGNTIRKL-GEVA------TVASAGRQ----GR 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P +T S L++F +LT A+E +DPV+GRE E+QR +QIL RRTKNNP+L+G
Sbjct: 157 KGFGTAPSKT--STLDEFGTNLTKLAAEGKLDPVVGREKEVQRAVQILGRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L+ K++ SLDMG L+AG + RG+ E R+ +++ E+
Sbjct: 215 EPGVGKTAIAEGLAQRIANNDVPDTLIDKQLYSLDMGSLVAGTRYRGDFEERIKSVLDEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + VILFIDE+HTLIG G G+D +N+LKP+L RGELQC+ +TT DE+R
Sbjct: 275 RSNSSVILFIDEIHTLIGVGG-----VEGGIDAANMLKPALARGELQCMGATTLDEYRKH 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS + + IL GLR++YE HH K + A+ AA LS RYIS
Sbjct: 330 IERDAALERRFQPVMVDEPSVVETIEILFGLRDRYEQHHKVKMSDLALAAAAQLSDRYIS 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR K+ E Q E+VQ ++
Sbjct: 390 DRFLPDKAIDLIDEAGSRVRFRNSKQSPETQAL------------------KQELVQVTK 431
Query: 559 LKYDDVVASMGDTS------EIVVESSLPSASDDDEPA-------VVGPDDIAAVASLWS 605
K V A D + E+ +E L + +D+ + VV +DIA + + W+
Sbjct: 432 EKEAAVSAQDFDNAGKLRDRELEIEQQLKAIADNRKQEIENASVPVVDEEDIAQIVASWT 491
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
G+PV ++T E LL+ LE+ L +R+IGQ+EAV A+S+A++R+RVGLK+P+RP A+ +F
Sbjct: 492 GVPVSKLTESESELLLHLEDTLHQRLIGQEEAVTAVSKAIRRARVGLKNPDRPIASFIFS 551
Query: 666 GPTGVGKTELAKSLAACYFGS 686
GPTGVGKTELAKSLAA +FGS
Sbjct: 552 GPTGVGKTELAKSLAAYFFGS 572
>gi|443309789|ref|ZP_21039475.1| ATPase with chaperone activity, ATP-binding subunit [Synechocystis
sp. PCC 7509]
gi|442780161|gb|ELR90368.1| ATPase with chaperone activity, ATP-binding subunit [Synechocystis
sp. PCC 7509]
Length = 822
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 272/613 (44%), Positives = 386/613 (62%), Gaps = 53/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL--ESGITIDKAR 138
+FE F++ A+K ++ +Q EA+ LG ++V ++ +LLGLI E+ + + GI I AR
Sbjct: 1 MFEHFSKEAIKVIMLAQEEARRLGHNLVGSEQVLLGLIGENTSIAAKVLNDLGINIKNAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F SA ++PF+ KRVF+ + E +R G NFIAPEH
Sbjct: 61 VEVEKII------------GRGSRFVSA-EIPFTPKMKRVFDKSFEAARQLGDNFIAPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKE--GREPSLAKGVRENSIS 256
+ LGL +G A +V++ LGVD AVA + EL K+ G + ++
Sbjct: 108 LFLGLIEEGEGVAIKVIENLGVD----TAVARKAVLDELEKQPVGANRGNVQSSTSRGVA 163
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
GKT + LE+F +LT A+E +DPV+GR+ EI+R +QIL RRTKNNP+L
Sbjct: 164 GKT-----------TTLEEFGTNLTKLAAEGKLDPVVGRDKEIERAVQILGRRTKNNPVL 212
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA RIV +P L K++ SLD+G L+AG + RG+ E R+ T++
Sbjct: 213 IGEPGVGKTAIAEGLAQRIVDKNIPDILEDKQVFSLDVGSLVAGTRHRGDFEERIKTIME 272
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ +G++IL IDEVH L+G+G+V +G G+D +N+LKP+L RGELQC+ +TT +E+R
Sbjct: 273 EIRAAGNIILVIDEVHNLVGAGSV----QG-GMDAANILKPALARGELQCLGATTLNEYR 327
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
E+D AL RRFQP+++ EPS E+ + IL GLR YE HH K + EAI AA LS RY
Sbjct: 328 QHIERDAALERRFQPIMVGEPSVEETIEILYGLRSVYEQHHKIKISDEAIFAAAKLSDRY 387
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQG 556
ISDR+LPDKAIDL+DEAGSRAH+ ++ E + QE+ ++ E
Sbjct: 388 ISDRFLPDKAIDLIDEAGSRAHLASSQQSPEVKQL---------KQELDSISKDKE---- 434
Query: 557 SRLKYDDV-VASMGDTSEIVVESSLPSASDDDEPAVVGPDD--IAAVASLWSGIPVQQIT 613
+K D VA EI V + AS++ + V D+ IA + + W+GIP+ ++T
Sbjct: 435 KAVKDQDFEVAGQLRDREIEVNEKIKLASENKQAVVTTVDEEAIAHIVASWTGIPLNKLT 494
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E +L+ LE+ L +R+IGQ+EAV A+SRA++R+RVGLK P+RP A+ +F GPTGVGKT
Sbjct: 495 ESESTVLLHLEDTLHQRIIGQEEAVTAVSRAIRRARVGLKSPDRPIASFIFSGPTGVGKT 554
Query: 674 ELAKSLAACYFGS 686
EL+K+LAA +FGS
Sbjct: 555 ELSKALAAYFFGS 567
>gi|414079261|ref|YP_007000685.1| ATP-dependent Clp family protein [Anabaena sp. 90]
gi|413972540|gb|AFW96628.1| ATP-dependent Clp family protein [Anabaena sp. 90]
Length = 838
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 276/620 (44%), Positives = 387/620 (62%), Gaps = 64/620 (10%)
Query: 79 SSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDK 136
+++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ +
Sbjct: 15 NAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKD 74
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 75 ARIEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGT 121
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EH+ LGL +G A RVL+ LGVD+ + V R+ GE A E +
Sbjct: 122 EHLLLGLIREGEGVAARVLENLGVDLTKVRT-QVIRMLGETA-------------EVTPG 167
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
G + GRT+ L++F +LT A + +DPV+GR EI+R+IQIL RRTKNNP+L
Sbjct: 168 GPS------GRTKTPTLDEFGSNLTQMAIDNKLDPVVGRAKEIERVIQILGRRTKNNPVL 221
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++
Sbjct: 222 IGEPGVGKTAIAEGLASRIASKDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMD 281
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 282 EIRSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYR 336
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
E+D AL RRFQPV++ EPS ++ + IL GLR++YEAHH K + EA+ AA LS RY
Sbjct: 337 KHIERDAALERRFQPVMVGEPSVDETIEILYGLRDRYEAHHKLKISDEALVAAAKLSDRY 396
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEV 553
ISDR+LPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 397 ISDRFLPDKAIDLMDEAGSRVRL------------INSQLPPAAKELDKELR--QILKEK 442
Query: 554 VQGSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
R + D + D +EI + ++ AS D VV +DIA + + W+G
Sbjct: 443 DDAVRSQDFDRAGELRDREMEIKAEIRTIAQTKSNGASGDGVEPVVTEEDIAHIVASWTG 502
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV ++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F G
Sbjct: 503 VPVNKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSG 562
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAKSLA+ +FG+
Sbjct: 563 PTGVGKTELAKSLASYFFGA 582
>gi|87303420|ref|ZP_01086208.1| endopeptidase Clp ATP-binding chain C [Synechococcus sp. WH 5701]
gi|87282068|gb|EAQ74030.1| endopeptidase Clp ATP-binding chain C [Synechococcus sp. WH 5701]
Length = 856
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 278/633 (43%), Positives = 391/633 (61%), Gaps = 63/633 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAEV-----------------T 149
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S G T+ L++F +LT A+E +DPV+GR EI R++QIL RRTKNNP+L+G
Sbjct: 150 AGGGGSKGSTKTPTLDEFGSNLTQLAAEGKLDPVVGRHNEIDRVVQILGRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ EVP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 210 EPGVGKTAIAEGLAQRIIIGEVPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 270 RGAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS D + IL GLRE+YE HH K + EA+ AA L RYIS
Sbjct: 325 IERDAALERRFQPVMVGEPSVVDTIEILRGLRERYEQHHRLKISDEALVAAATLGDRYIS 384
Query: 499 DRYLPDKAIDLVDEAGSRAHI----------ELFKR----KKEQQTCI----LSKPPDDY 540
DR+LPDKAIDLVDEAGSR + EL K+ +K+++ + K +
Sbjct: 385 DRFLPDKAIDLVDEAGSRVRLMNSKLPPAAKELDKQLRAIQKQKEDSVRQQDFGKAGELR 444
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDD-------DEPAVVG 593
+E+ + ++Q R + ++ ++E E+ +A+D+ + VV
Sbjct: 445 DKEVELRDQIRSILQARRDEEPVASTAVEGSAEATAEAKASTAADNALASSSGERHPVVT 504
Query: 594 PDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLK 653
+DIA + + W+G+PVQ++T E + L+ +EE L +R+IGQDEAV A+S+A++R+RVGLK
Sbjct: 505 EEDIAQIVASWTGVPVQKLTESESVKLLNMEETLHQRLIGQDEAVKAVSKAIRRARVGLK 564
Query: 654 DPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
+PNRP A+ +F GPTGVGKTEL K+LAA +FGS
Sbjct: 565 NPNRPIASFIFSGPTGVGKTELTKALAAYFFGS 597
>gi|428211987|ref|YP_007085131.1| chaperone ATPase [Oscillatoria acuminata PCC 6304]
gi|428000368|gb|AFY81211.1| ATPase with chaperone activity, ATP-binding subunit [Oscillatoria
acuminata PCC 6304]
Length = 822
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 274/619 (44%), Positives = 387/619 (62%), Gaps = 66/619 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+ SG
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE--------------VTSGA 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ A RT+ L++F +LT A+E +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 153 SNA-----RTKTPTLDEFGANLTQMAAEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANNDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + +VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSARNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ ++ + IL GLR++YE HH K + EA++AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPTVDETIEILFGLRDRYEQHHKLKISDEALDAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDLVDEAGSR + I S+ P + +E+R Q + +
Sbjct: 383 DRFLPDKAIDLVDEAGSRVRL------------INSQLPPAAKELDKELR--QVLKDKDD 428
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS--------ASDDDEPAVVGPDDIAAVASLWSGI 607
R + D + D E+ +++ + S SD + VV +DIA + + W+G+
Sbjct: 429 AVRSQDFDRAGELRD-REMEIKAEIRSIASNKKTGVSDSELSPVVTEEDIAQIVASWTGV 487
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T E L+ +E+ L +R+IGQ+EAV A+SRA++R+RVGLK+PNRP A+ +F GP
Sbjct: 488 PVNKLTESESEKLMHMEDTLHQRLIGQEEAVKAVSRAIRRARVGLKNPNRPIASFIFSGP 547
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGKTEL K+LA+ +FGS
Sbjct: 548 TGVGKTELTKALASYFFGS 566
>gi|409991063|ref|ZP_11274359.1| ATPase [Arthrospira platensis str. Paraca]
gi|291567331|dbj|BAI89603.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Arthrospira
platensis NIES-39]
gi|409938081|gb|EKN79449.1| ATPase [Arthrospira platensis str. Paraca]
Length = 824
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 269/609 (44%), Positives = 384/609 (63%), Gaps = 46/609 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FE F+++A+KAV+ SQ EA+ LG + V T+ LLLG+I E + + +D R
Sbjct: 1 MFEYFSDKAIKAVMLSQEEARRLGHNFVGTEQLLLGIIGEGTSIAAKVLSDQNLNLDNTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ SI +G F ++PF+ KRVFEAA++ +R G N+IAPEH
Sbjct: 61 REIESII------------GRGSGFMPP-EIPFTPRAKRVFEAAMKEARQLGNNYIAPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL ++G A +VL+ LG++ L + L E+ P+ A G
Sbjct: 108 ILLGLLQDEEGVAAKVLENLGIERRQLRTELIKNLGEEV------PASAGGTS------- 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+S GR A+ L++F +LT A++ +DP++GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 155 ----RSSGRKTAT-LDEFSTNLTQLAAQGKLDPIVGRDREIERVIQILGRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ VP L +++++SL+MG L+AG + RGE E R+ ++ EI
Sbjct: 210 EPGVGKTAIAEGLAQRIINGNVPELLENRQVVSLEMGTLVAGTRFRGEFEERLKKIVQEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ SG++IL IDE+HTL+G+G + +GT +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 270 KASGNIILLIDEIHTLVGAGAI----EGT-MDAANMLKPALARGELQCIGATTLDEYRKY 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLR YE HH + EA+ AA LS RYIS
Sbjct: 325 IERDAALERRFQPVMVGEPSVEETIEILFGLRSAYEQHHRLTISDEAVLAAAKLSHRYIS 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR + K E + + + D Q+ VQA + +
Sbjct: 385 DRFLPDKAIDLIDEAGSRVRVMHSKLPPEVRDLKV-ELSDIVKQKDAAVQA-QDFEKAGE 442
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
L+ ++ + VE+S+ + +V +DIA V S W+GIPV ++T E
Sbjct: 443 LRDRELQCKDQIEAASQVETSIKTN------LIVTEEDIADVLSAWTGIPVTKMTESESY 496
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ +E+ L +R+IGQ EAV+A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTEL K+
Sbjct: 497 KLMHMEDTLHQRLIGQHEAVSAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKA 556
Query: 679 LAACYFGSV 687
LA +FGSV
Sbjct: 557 LAYYFFGSV 565
>gi|318040228|ref|ZP_07972184.1| ATPase [Synechococcus sp. CB0101]
Length = 853
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 279/632 (44%), Positives = 390/632 (61%), Gaps = 64/632 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVR-TQVIRMLGETAEVA----------------- 149
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ G T+ L++F +LT +A++ +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 150 SGGGGGKGSTKTPTLDEFGSNLTQQAADGKLDPVVGRQHEIERVIQILGRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 210 EPGVGKTAIAEGLAQRINSGDVPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 270 RGAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV + EPS +D + IL GL+E+YEAHH EA+ AA L RYIS
Sbjct: 325 IERDAALERRFQPVQVGEPSVDDTIEILRGLKERYEAHHRLTIADEALVAAATLGDRYIS 384
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDY 540
DR+LPDKAIDL+DEAGSR + +L +KE++ + +K +
Sbjct: 385 DRFLPDKAIDLIDEAGSRVRLMNSKLPPAAKEVDKQLRAVQKEKEDAVREQDFTKAGELR 444
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESS------LPSASDDDEPAVVGP 594
+E+ + ++Q + + + VA G SE E+S + A DD +V
Sbjct: 445 DKEVELRDQIRSILQTRKEEPEAQVAEAG--SEATAETSAPAATAVAEAPADDRTPMVTE 502
Query: 595 DDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKD 654
+DIA + + W+G+PVQ++T E L+ +EE L +R+IGQDEAV A+SRA++R+RVGLK+
Sbjct: 503 EDIAQIVASWTGVPVQKLTESESAKLLNMEETLHQRLIGQDEAVKAVSRAIRRARVGLKN 562
Query: 655 PNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
PNRP A+ +F GPTGVGKTEL KSLAA +FGS
Sbjct: 563 PNRPIASFIFSGPTGVGKTELTKSLAAYFFGS 594
>gi|81299071|ref|YP_399279.1| ATPase [Synechococcus elongatus PCC 7942]
gi|81167952|gb|ABB56292.1| ATPase [Synechococcus elongatus PCC 7942]
Length = 824
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 278/618 (44%), Positives = 386/618 (62%), Gaps = 63/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E S G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVSTGG- 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
GRT+ L++F +LT +A++ +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 153 -----GQGRTKTPTLDEFGSNLTQQAADGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIATGDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS +D + IL GLRE+YE HH K EA+ AA L+ RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVDDTIEILRGLRERYEQHHKLKIADEALEAAAKLADRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR + L + +E+R Q + + R
Sbjct: 383 DRFLPDKAIDLIDEAGSRVRL---------MNSQLPPAAKELDKELR--QVLKDKDDAVR 431
Query: 559 LKYDDVVASMGDTSEIVVESSLPS----------ASDDDEPAVVGPDDIAAVASLWSGIP 608
+ D + D E+ +++ + S +S DD P +V +DIA + + W+G+P
Sbjct: 432 SQDFDKAGELRD-REMEIKTQIRSIAQSKKADGTSSTDDSP-IVTEEDIAHIVASWTGVP 489
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 490 VNKLTESESTKLLNMEETLHSRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASFIFSGPT 549
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL K+LAA +FGS
Sbjct: 550 GVGKTELTKALAAYFFGS 567
>gi|334118189|ref|ZP_08492279.1| ATPase AAA-2 domain protein [Microcoleus vaginatus FGP-2]
gi|428317617|ref|YP_007115499.1| ATPase AAA-2 domain protein [Oscillatoria nigro-viridis PCC 7112]
gi|333460174|gb|EGK88784.1| ATPase AAA-2 domain protein [Microcoleus vaginatus FGP-2]
gi|428241297|gb|AFZ07083.1| ATPase AAA-2 domain protein [Oscillatoria nigro-viridis PCC 7112]
Length = 825
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/622 (43%), Positives = 384/622 (61%), Gaps = 69/622 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
AA RT+ L++F +LT A + +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VAATGGGARTKTPTLDEFGANLTQMAVDGKLDPVVGRQKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIANNDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RTAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ ++ + IL GLRE+YE HH K A+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPTVDETIEILFGLRERYEQHHKLKILDTALEAAAKLSHRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDLVDEAGSR + I S+ P + +E+R Q + + +
Sbjct: 383 DRFLPDKAIDLVDEAGSRVRL------------INSQLPPAAKELDKELR--QVLKDKDE 428
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSAS-----------DDDEPAVVGPDDIAAVASLW 604
R + D + D E+ +++ + + S + D VV +DIA + + W
Sbjct: 429 AVRSQDFDKAGELRD-REMTIKAEIRAISQAKKTDSARTGETDPSPVVTEEDIAQIVASW 487
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+G+PV ++T E L+ +E+ L +R+IGQ+EAV A+SRA++R+RVGLK+PNRP A+ +F
Sbjct: 488 TGVPVNKLTESESEKLLHMEDTLHQRLIGQEEAVKAVSRAIRRARVGLKNPNRPIASFIF 547
Query: 665 CGPTGVGKTELAKSLAACYFGS 686
GPTGVGKTEL K+LA +FGS
Sbjct: 548 SGPTGVGKTELTKALAGYFFGS 569
>gi|428301853|ref|YP_007140159.1| ATPase [Calothrix sp. PCC 6303]
gi|428238397|gb|AFZ04187.1| ATPase AAA-2 domain protein [Calothrix sp. PCC 6303]
Length = 823
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 275/618 (44%), Positives = 389/618 (62%), Gaps = 64/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A E + G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVTQGGP 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ K+P L++F +LT A + +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 SSRTKTP------TLDEFGSNLTQMAIDGKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLATRISTKDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLR++YE HH K + EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVDETIEILYGLRDRYEQHHKLKISDEALVAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDLVDEAGSR + I S+ P + +E+R Q + E
Sbjct: 383 DRFLPDKAIDLVDEAGSRVRL------------INSQLPPAAKELDKELR--QILKEKDD 428
Query: 556 GSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
R + D + D +EI + ++ + ++ E VV +DIA + + W+G+P
Sbjct: 429 AVRSQDFDRAGELRDREMEIKAEIRTIAQNKTNAKGNEGEEPVVTEEDIAHIVASWTGVP 488
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 489 VNKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPT 548
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAKSLA+ +FGS
Sbjct: 549 GVGKTELAKSLASYFFGS 566
>gi|356513459|ref|XP_003525431.1| PREDICTED: chaperone protein ClpC, chloroplastic-like [Glycine max]
Length = 919
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 295/667 (44%), Positives = 402/667 (60%), Gaps = 69/667 (10%)
Query: 31 LQYVNPMSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAV 90
L+ +NPM S +S F N TS R+R K ++FERFTE+A+
Sbjct: 52 LRTLNPMDS------LSRPRHTFPLNTTSR---------RERAKRCVPKAMFERFTEKAI 96
Query: 91 KAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHST 148
K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + AR V I
Sbjct: 97 KVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII--- 153
Query: 149 NNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDD 208
+G F A ++PF+ KRV E ++E +R G+N+I EH+ LGL +
Sbjct: 154 ---------GRGSGFV-AVEIPFTPRAKRVLEFSLEEARQLGHNYIGSEHLLLGLLREGE 203
Query: 209 GSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRT 268
G A RVL+ LG D N++ A V R+ GE A +S+ G T S
Sbjct: 204 GVAARVLENLGADPNNIRA-QVIRMVGEGA--------------DSV-GATVGPGSSNNN 247
Query: 269 RASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIA 328
+ LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+GE GVGKTAIA
Sbjct: 248 KMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIA 307
Query: 329 EGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFI 388
EGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ EI++S ++ILFI
Sbjct: 308 EGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFI 367
Query: 389 DEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARR 448
DEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R EKD AL RR
Sbjct: 368 DEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERR 422
Query: 449 FQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508
FQPV + EP+ ++ ++IL GLRE+YE HH ++T +A+ AA LS +YISDR+LPDKAID
Sbjct: 423 FQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAQLSHQYISDRFLPDKAID 482
Query: 509 LVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR-TVQAMHEVVQGS--------RL 559
L+DEAGSR + Q L + + +E+R V+ E V+ R
Sbjct: 483 LIDEAGSRVRL---------QHAQLPEEARELDKEVRQIVKEKEEFVRNQDFEKAGELRD 533
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERML 619
+ D+ A + E E S + DE +V DI + S W+GIPV++++ DE
Sbjct: 534 REMDLKAQISALIEKGKEMSKAESEAGDEGPMVTEVDIQHIVSSWTGIPVEKVSTDESDR 593
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ +EE L KRVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+L
Sbjct: 594 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKAL 653
Query: 680 AACYFGS 686
AA YFGS
Sbjct: 654 AAYYFGS 660
>gi|428309114|ref|YP_007120091.1| chaperone ATPase [Microcoleus sp. PCC 7113]
gi|428250726|gb|AFZ16685.1| ATPase with chaperone activity, ATP-binding subunit [Microcoleus
sp. PCC 7113]
Length = 827
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 271/622 (43%), Positives = 398/622 (63%), Gaps = 67/622 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHP-----NGFLESGITID 135
+FERFT+RA+KA++ +Q EA+ LG ++V T+ +LLGL+ E + N F GIT++
Sbjct: 1 MFERFTDRAIKAIMLAQEEARRLGHNLVGTEQILLGLLGEGKGIASIVLNNF---GITLE 57
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSA-AKMPFSISTKRVFEAAVEYSRSRGYNFI 194
AR V ++ G+ + + A++PF+ KR+F+ + + +R G+N+I
Sbjct: 58 SARAEVENLI--------------GRGYRAVPAQLPFTPKAKRIFDQSFKEARQLGHNYI 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EH+ L + ++G A +V++ L VD+ + + AV + GE+A + S + +S
Sbjct: 104 GTEHLLLAITHDEEGVAAKVIENLDVDLGDVRS-AVIKAMGEVAAAAKTRS-----QGSS 157
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+ G+T T+ ++LE+F +LT A E +DPV+GR EI+R+IQIL RRTKNNP
Sbjct: 158 LFGETP-------TKKASLEEFGRNLTQLALEGKLDPVVGRAKEIERVIQILGRRTKNNP 210
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA RIV VP L K++ +LDMGLL++G + RG+ E R+ +
Sbjct: 211 VLIGEPGVGKTAIAEGLAQRIVDNHVPDLLEDKQVFTLDMGLLLSGTRYRGDFEERLKQI 270
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ E+++SG++IL IDE+HTL+G+G+ G+D +NLLKP+L RGELQC+ +TT DE
Sbjct: 271 MEEVRQSGNIILVIDEIHTLVGAGST-----EGGMDAANLLKPALARGELQCLGATTLDE 325
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R E+D AL RRFQPV++ EPS ED + IL GLR+ YE H K + +A+ AA LS
Sbjct: 326 YRKHIERDAALERRFQPVMVGEPSVEDTIEILYGLRDAYEQFHKVKISNQALEAAAKLSD 385
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP---PDDYWQEIRTV-QAM 550
RYI DR+LPDKAIDL+DEAGSR H+ I S P + QE+R + Q
Sbjct: 386 RYIQDRFLPDKAIDLIDEAGSRIHL------------IHSGPSPAAKELKQELRRITQKK 433
Query: 551 HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA------VVGPDDIAAVASLW 604
E V+ D + M D E+ +ES L + ++D+ V +DIA + + W
Sbjct: 434 EEAVKAQNF---DKASQMRD-RELELESQLQAMLNNDQEQNASLTPTVTEEDIAQIVASW 489
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+GIPV ++T E +L+ LE+ L +R++GQ+EAV A+SRA++R+RVGLK+PNRP A+ +F
Sbjct: 490 TGIPVNKLTESESAMLLHLEDTLHQRLVGQEEAVVAVSRAIRRARVGLKNPNRPIASFIF 549
Query: 665 CGPTGVGKTELAKSLAACYFGS 686
GPTGVGKTELAK+LAA +FGS
Sbjct: 550 SGPTGVGKTELAKALAAYFFGS 571
>gi|307104044|gb|EFN52300.1| hypothetical protein CHLNCDRAFT_32555 [Chlorella variabilis]
Length = 844
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/615 (44%), Positives = 382/615 (62%), Gaps = 49/615 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFTE+A+K V+ +Q EA+ LG + V T+ +LLGLI E L+S G+T+ AR
Sbjct: 7 MFERFTEKAIKVVMLAQEEARRLGHNFVGTEQILLGLIGESTGIAAKVLKSMGVTLKDAR 66
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R+ G+N+I EH
Sbjct: 67 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARALGHNYIGTEH 113
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL+ LG D + V R+ GE +EP + +S S K
Sbjct: 114 ILLGLLREGEGVASRVLETLGADPQKIR-TQVIRMVGE----SQEPVGSTVGGGSSGSNK 168
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
LE++ +LT +A E +DPV+GR+ EI+R+ QIL RRTKNNP L+G
Sbjct: 169 M-----------PTLEEYGTNLTQQAEEGKLDPVVGRKKEIERVTQILGRRTKNNPCLIG 217
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA +I +VP + K++++LDMGLL+AG K RGE E R+ L+ EI
Sbjct: 218 EPGVGKTAVAEGLAQKIATGDVPETIEGKQVVTLDMGLLVAGTKYRGEFEERLKKLMEEI 277
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ D+IL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 278 KQNDDIILMIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 332
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E+ I+LGLRE+YEAHH ++T EA+ AA S++YIS
Sbjct: 333 IEKDPALERRFQPVHVPEPSVEETYEIMLGLRERYEAHHKLRYTDEALRAAAKYSSQYIS 392
Query: 499 DRYLPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH 551
DR+LPDKAIDL+DEAGSR + E + KE + + K Q+ ++
Sbjct: 393 DRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELDKELRALLKEKDAAVRAQDFEKAGSLR 452
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + + + +S D++ +ES +V DIA + + W+GIP+++
Sbjct: 453 DREMELKSQISAITSSAKDSARAEMESGEGGGP------MVTEQDIANIVAQWTGIPIEK 506
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+++DE LV +E+ L RVIGQ+EAV AISRA++R+RVGLK+P+RP A+ +F GPTGVG
Sbjct: 507 VSSDETERLVKMEQVLHGRVIGQEEAVTAISRAIRRARVGLKNPSRPIASFIFSGPTGVG 566
Query: 672 KTELAKSLAACYFGS 686
K+ELAK+LA+ YFGS
Sbjct: 567 KSELAKTLASYYFGS 581
>gi|427715740|ref|YP_007063734.1| ATPase [Calothrix sp. PCC 7507]
gi|427348176|gb|AFY30900.1| ATPase AAA-2 domain protein [Calothrix sp. PCC 7507]
Length = 815
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 270/616 (43%), Positives = 381/616 (61%), Gaps = 66/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT A+K ++ +Q EA+ LG + V T+ +LLGL+ E E G+T+ AR
Sbjct: 1 MFEHFTSEAIKVIMLAQEEARRLGHNFVGTEQILLGLMGEGTGVAAKVLSELGVTLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F ++PF+ K +FE + + + S G+N+I EH
Sbjct: 61 REVEKII------------GRGSGFVPP-EIPFTPKVKSLFEQSFKEAHSLGHNYINTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL+ LGVD+ + + + RL G P++A G G+
Sbjct: 108 VLLGLTEAGEGVAAKVLQNLGVDLKSVRSAVIRRL-------GDNPNVAAG------GGQ 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
RT+ +LE+F +LT A E +DPV+GRE EI+R IQIL RRTKNNP+L+G
Sbjct: 155 R-------RTQTLSLEEFGRNLTKLAQEGRLDPVVGREKEIERTIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ +VP LL+K+++SLDMG L+AG + RG+ E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIINQDVPEVLLNKQVISLDMGSLVAGTRFRGDFEERLKKVMEEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ G++IL IDEVHTL+G+G G +G GLD +N+LKP+L RGELQCI +TT +E+R
Sbjct: 268 RSVGNIILVIDEVHTLVGAG----GTEG-GLDAANILKPALARGELQCIGATTLNEYRQH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+L+ EPS + V+IL GLR YE HH + A+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPILVGEPSVAETVQILYGLRSAYEQHHKVHISDAAVLAAAELSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAH-----IELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAIDL+DEAGSR H I K K + T + SK D+ + + +
Sbjct: 383 DRFLPDKAIDLIDEAGSRVHLRNSQISSNKELKRELTGV-SKSKDEAVR-------LQDF 434
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA---VVGPDDIAAVASLWSGIPVQ 610
+ +L+ E+ + S L +D+ +V +DIA + + W+G+PV
Sbjct: 435 GKAGKLR----------NQELQLTSQLHPELQNDQNVNIPIVDEEDIAQIVASWTGVPVN 484
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T E LL+ LE+ L KR+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGV
Sbjct: 485 KLTESESELLLHLEDTLHKRLIGQEQAVTAVSRAIRRARVGLKNPNRPIASFIFSGPTGV 544
Query: 671 GKTELAKSLAACYFGS 686
GKTELAK+LAA +FG+
Sbjct: 545 GKTELAKALAAYFFGA 560
>gi|147676618|ref|YP_001210833.1| ATPase with chaperone activity, ATP-binding subunit [Pelotomaculum
thermopropionicum SI]
gi|146272715|dbj|BAF58464.1| ATPase with chaperone activity, ATP-binding subunit [Pelotomaculum
thermopropionicum SI]
Length = 810
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 276/633 (43%), Positives = 382/633 (60%), Gaps = 66/633 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K ++F+Q EAKS V T+HLLLGLI E G+ DK R
Sbjct: 1 MFGRFTERAQKVLMFAQEEAKSASYPYVGTEHLLLGLIREGEGVAARALASLGVDADKVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
AV + A+G+P ++ + KRV E +V+ +R G+N++ EH
Sbjct: 61 TAVAQMVEP----------AKGQP---PVELVLTPRAKRVLELSVDEARRMGHNYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A ++L G D + + V++L G A +P+ + GK
Sbjct: 108 LLLGLIREGEGVAAQILNAFGADYRKVRTI-VAQLHGGQA----QPA-------GQVPGK 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++P L+QF DLTA A E+ +DPV+GRE EI+R+IQ+L RRTKNNP+L+G
Sbjct: 156 FKGGQTP------TLDQFGRDLTALAREDKLDPVVGREKEIERVIQVLSRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV VP L +KR+++LDMG L+AG K RGE E R+ +I EI
Sbjct: 210 EPGVGKTAIAEGLAQRIVAGNVPEILANKRVVTLDMGSLVAGTKYRGEFEERLKKVIEEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++I+FIDE+HTL+G+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 270 RQAGNIIMFIDELHTLVGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E+ ++IL GLR+KYEAHH + T A+ AA LS+RYI+
Sbjct: 325 IEKDAALERRFQPITVVEPTVEETIQILRGLRDKYEAHHRVRITDAALEAAAKLSSRYIT 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQ 555
DR+LPDKAIDLVDEAGSR ++ F PPD + +++ +Q E V
Sbjct: 385 DRFLPDKAIDLVDEAGSRVRLQAF-----------VPPPDLKELEKKLEVLQKEKEAAVN 433
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPV 609
G + A + D E V + L S + VV +DIA + S W+GIPV
Sbjct: 434 GQEFEK---AAELRD-QEQKVRAELESLRESWKQRQGGTELVVDEEDIAHIVSSWTGIPV 489
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+++ +E L+ +EE L +RV+GQDEA+ A+SRA++R+R GLKDP RP + +F GPTG
Sbjct: 490 KKLAEEESERLLKMEEVLHQRVVGQDEAIRAVSRAIRRARAGLKDPKRPIGSFIFLGPTG 549
Query: 670 VGKTELAKSLAACYFGS----VRIHYLFFPSPF 698
VGKTELA++LA FGS VRI + F
Sbjct: 550 VGKTELARALAEVLFGSEDAMVRIDMSEYMEKF 582
>gi|354567441|ref|ZP_08986610.1| ATPase AAA-2 domain protein [Fischerella sp. JSC-11]
gi|353542713|gb|EHC12174.1| ATPase AAA-2 domain protein [Fischerella sp. JSC-11]
Length = 851
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 275/620 (44%), Positives = 389/620 (62%), Gaps = 64/620 (10%)
Query: 79 SSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDK 136
+++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ +
Sbjct: 28 NAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKD 87
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 88 ARIEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGT 134
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EH+ LGL +G A RVL+ +GVD++ + V R+ GE A E +
Sbjct: 135 EHLLLGLIREGEGVAARVLENVGVDLSKVRT-QVIRMLGETA-------------EVTQG 180
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
G + K+P L++F +LT A + +DPV+GR EI+R+IQIL RRTKNNP+L
Sbjct: 181 GPSRGNKTP------TLDEFGSNLTQMALDGKLDPVVGRAKEIERVIQILGRRTKNNPVL 234
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++
Sbjct: 235 IGEPGVGKTAIAEGLAQRIANKDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMD 294
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+++G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 295 EIRQAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYR 349
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
E+D AL RRFQPV++ EPS ++ + IL GLR++YE HH K + EA+ AA LS RY
Sbjct: 350 KHIERDAALERRFQPVMVGEPSVDETIEILRGLRDRYEQHHKLKISDEALIAAAKLSDRY 409
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEV 553
ISDRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + E
Sbjct: 410 ISDRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDRELR--QILKEK 455
Query: 554 VQGSRLKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
R + D + D +EI + +S + + E VV +DIA + + W+G
Sbjct: 456 DDAVRAQDFDRAGELRDREMEIKAEIRAIAQSKTGTGRAEGEEPVVTEEDIAHIVASWTG 515
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV ++T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F G
Sbjct: 516 VPVNKLTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSG 575
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAK+LA+ +FGS
Sbjct: 576 PTGVGKTELAKALASYFFGS 595
>gi|11465497|ref|NP_045112.1| Clp protease ATP binding subunit [Cyanidium caldarium]
gi|14194537|sp|Q9TM05.1|CLPC_CYACA RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA
homolog
gi|6466400|gb|AAF12982.1|AF022186_105 unknown [Cyanidium caldarium]
Length = 854
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 269/651 (41%), Positives = 392/651 (60%), Gaps = 76/651 (11%)
Query: 52 FFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQ 111
F + T N N +C ++ ++FERFTE+AVK ++ +Q EA+ LG + V T+
Sbjct: 9 FLKAMLTLLNIKGNNMCWAHKK------NMFERFTEKAVKVIMLAQEEARRLGHNFVGTE 62
Query: 112 HLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKM 169
+LLG++ E GIT+ AR V I +G F A ++
Sbjct: 63 QILLGILGEGTGLAAKALKSMGITLKDARIEVEKII------------GRGSGFV-AIEI 109
Query: 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVA 229
PF+ K++ E A+E SR +N++ EH+ LGL +G A RVL+ LGVD+ L +
Sbjct: 110 PFTPRAKKILELAIEESRILTHNYVGTEHLLLGLIKEGEGVAARVLENLGVDLPKLRS-N 168
Query: 230 VSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELI 289
+ R+ GE + + + + GR++ LE+F +LT A E +
Sbjct: 169 IIRMIGE-------------------TSEVSVGATSGRSKVPTLEEFGTNLTQMAVEGKL 209
Query: 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349
DPV+GR EI+R++QIL RRTKNNP+L+GE GVGKTAIAEGLA RI+ EVP L K++
Sbjct: 210 DPVVGRAKEIERVVQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIINNEVPDTLEDKKV 269
Query: 350 MSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGL 409
++LD+ LL+AG K RGE E R+ ++ EI+ + +VIL IDEVHTLIG+G +
Sbjct: 270 ITLDVSLLVAGTKYRGEFEERLKKIMDEIRMADNVILVIDEVHTLIGAGAA-----EGAI 324
Query: 410 DISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGL 469
D +N+LKP+L RGELQCI +TT +E+R EKD AL RRFQPV++ EP+ E+ + IL GL
Sbjct: 325 DAANILKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVMVEEPTVEETIEILRGL 384
Query: 470 REKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQ 529
R++YEAHH K + AI AA LS +YI+DR+LPDKAIDLVDEA SR + +K
Sbjct: 385 RDRYEAHHRLKISDSAIVAAAKLSDQYIADRFLPDKAIDLVDEASSRVRLMNYKL----- 439
Query: 530 TCILSKPPDDYW--QEIRTVQAM-HEVV------QGSRLKYDDV-----VASMGDTSEIV 575
PP + +E+R +Q + +E++ + S+ + ++ +A++ +
Sbjct: 440 ------PPSAEYLDEELRHIQKIKNELIRSGDFEEASQFREREIEVKVQMAALMKAKKEA 493
Query: 576 VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQD 635
+E L P +V DDIA + S W+GIPV ++T E L+ +EE L R++GQ+
Sbjct: 494 IEEELAL-----NPPIVNEDDIANIVSSWTGIPVSKLTKSESEKLLHMEETLHSRIVGQN 548
Query: 636 EAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
EAV A+S+A++R+RVGLK+PNRP A+ +F GPTGVGKTEL K++A+ +FGS
Sbjct: 549 EAVIAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAMASYFFGS 599
>gi|428775828|ref|YP_007167615.1| ATPase [Halothece sp. PCC 7418]
gi|428690107|gb|AFZ43401.1| ATPase AAA-2 domain protein [Halothece sp. PCC 7418]
Length = 823
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 279/620 (45%), Positives = 388/620 (62%), Gaps = 67/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ S GRT+ L++F +LT A++ +DPV+GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VSSGSSQGRTKTPTLDEFGSNLTQLATDSKLDPVVGRQNEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L +KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRISNEDVPDILENKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP+ ED V IL GLR++YE HH + T A++AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPTVEDTVEILFGLRDRYEQHHKLRITDAALDAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DRYLPDKAIDL+DEAGSR + I S+ P + +E+R Q + +
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRL------------INSQLPPAAKELDEELR--QVLKQKDD 428
Query: 556 GSRLKYDDVVASMGDTSEIVVES---SLPSA------SDDDEPAVVGPDDIAAVASLWSG 606
R + D + D E+ ++S SL SA DD VV ++IA + + W+G
Sbjct: 429 AVRSQDFDRAGELRD-REMEIKSEIRSLASAKNTETSQDDQVGPVVDVEEIAHIVASWTG 487
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV +IT E L+ +E L +R+IGQ+EAV A+SRA++R+RVGLK+PNRP A+ +F G
Sbjct: 488 VPVSKITETESEKLLHMEGTLHERLIGQEEAVRAVSRAIRRARVGLKNPNRPIASFIFSG 547
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTEL K+LA +FGS
Sbjct: 548 PTGVGKTELTKALATYFFGS 567
>gi|119512929|ref|ZP_01631992.1| endopeptidase Clp ATP-binding chain [Nodularia spumigena CCY9414]
gi|119462425|gb|EAW43399.1| endopeptidase Clp ATP-binding chain [Nodularia spumigena CCY9414]
Length = 823
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 277/615 (45%), Positives = 385/615 (62%), Gaps = 58/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+A GRT+ L++F +LT A + +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 148 VSATGPSGRTKTPTLDEFGSNLTQMAVDNKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLASRIANKDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 RSAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLRE+YE HH K + EA+ AA LS RYIS
Sbjct: 323 IERDAALERRFQPVMVGEPSVDETIEILHGLRERYEQHHKLKISDEALVAAAKLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAGSR R Q +K D ++I ++ + V+G
Sbjct: 383 DRYLPDKAIDLIDEAGSRV------RLMNSQLPPAAKELDKELRQI--LKEKDDAVRGQD 434
Query: 559 LKYDDVVASMGD-----TSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
D + D EI + +S + + E VVG +DIA + + W+G+PV +
Sbjct: 435 F---DKAGELRDREMEIKGEIRAIAQSKTSATGTEGEEPVVGEEDIAHIVASWTGVPVNK 491
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVG
Sbjct: 492 LTESESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPTGVG 551
Query: 672 KTELAKSLAACYFGS 686
KTELAKSLA+ +FGS
Sbjct: 552 KTELAKSLASYFFGS 566
>gi|755163|gb|AAB67745.1| ClpC [Synechococcus elongatus PCC 7942]
Length = 839
Score = 474 bits (1219), Expect = e-130, Method: Compositional matrix adjust.
Identities = 277/619 (44%), Positives = 387/619 (62%), Gaps = 63/619 (10%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKA 137
++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + A
Sbjct: 15 AMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDA 74
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E ++E +R G+N+I E
Sbjct: 75 RIEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTE 121
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LGVD++ + V R+ GE A E S G
Sbjct: 122 HLLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETA-------------EVSTGG 167
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
GRT+ L++F +LT +A++ +DPV+GR+ EI+R+IQIL RRTKNNP+L+
Sbjct: 168 ------GQGRTKTPTLDEFGSNLTQQAADGKLDPVVGRQKEIERVIQILGRRTKNNPVLI 221
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ E
Sbjct: 222 GEPGVGKTAIAEGLAQRIATGDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDE 281
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ +G+VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 282 IRSAGNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRK 336
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQPV++ EPS +D + IL GLRE+YE HH K EA+ AA L+ RYI
Sbjct: 337 HIERDAALERRFQPVMLGEPSVDDTIEILRGLRERYEQHHKLKIADEALEAAAKLADRYI 396
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
SD +LPDKAIDL+DEAGSR + L+ + +E+R Q + +
Sbjct: 397 SDLFLPDKAIDLIDEAGSRVRL---------MNSQLAPAAKELDKELR--QVLKDKDDAV 445
Query: 558 RLKYDDVVASMGDTSEIVVESSLPS----------ASDDDEPAVVGPDDIAAVASLWSGI 607
R + D + D E+ +++ + S +S DD P +V +DIA + + W+G+
Sbjct: 446 RSQDFDKAGELRD-REMEIKTQIRSIAQSKKADGTSSTDDSP-IVTEEDIAHIVASWTGV 503
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GP
Sbjct: 504 PVNKLTESESTKLLNMEETLHSRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASFIFSGP 563
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGKTEL K+LAA +FGS
Sbjct: 564 TGVGKTELTKALAAYFFGS 582
>gi|428300697|ref|YP_007139003.1| ATPase [Calothrix sp. PCC 6303]
gi|428237241|gb|AFZ03031.1| ATPase AAA-2 domain protein [Calothrix sp. PCC 6303]
Length = 817
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 264/616 (42%), Positives = 384/616 (62%), Gaps = 63/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-----FLESGITID 135
+FE FT +A++ ++ +Q EA+ LG + V T+ +LLGLI E NG ++ G+T+
Sbjct: 1 MFEHFTSQAIRVIMLAQEEARRLGHNFVGTEQILLGLIGEG---NGVAAKVLVDLGVTLK 57
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F ++PF+ K +FE A + +RS G N+I+
Sbjct: 58 DARREVEKII------------GRGSGFVPP-EIPFTPKVKSLFEQAFKEARSLGNNYIS 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A +VL+ LG+D++ + + RL ++A + + G R N
Sbjct: 105 TEHLLLGLTEAGEGVAAKVLQNLGIDLSEVRTAVIRRLGDDVAVAPGAGASSGGQRRNQ- 163
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
++ LE+F +LT A E +DPV+GR EI+R +QIL RRTKNNP+
Sbjct: 164 -------------QSLMLEEFGKNLTKLAQEGKLDPVVGRANEIERAVQILGRRTKNNPV 210
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RIV +VP LL K+++SLDMGL++AG + RG+ E R+ ++
Sbjct: 211 LIGEPGVGKTAIAEGLAQRIVNQDVPEILLGKQVVSLDMGLMVAGTRFRGDFEERLKKVM 270
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ G++IL IDE+HTL+G+G V G+D +N++KP+L RGELQC+ +TT +E+
Sbjct: 271 EEIRTEGNIILVIDEIHTLVGAGGV-----EGGMDAANIMKPALARGELQCLGATTLNEY 325
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R E+D AL RRFQP+L+ EPS E+ + IL GLR YE HH T EA+ AA LS R
Sbjct: 326 RN-IERDAALERRFQPILVGEPSVEETIHILQGLRSVYEQHHRVTITDEALQAAAELSDR 384
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFK----RKKEQQTCILSKPPDDYWQEIRTVQAMH 551
YISDR+LPDKAIDL+DEAGSR + + R+ ++Q LSK D+ + +
Sbjct: 385 YISDRFLPDKAIDLIDEAGSRVRLRNSQISQSRELKRQLRSLSKEKDEAVR-------VQ 437
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDD-DEPAVVGPDDIAAVASLWSGIPVQ 610
+ + +L+ EI +E + + S D + +V +DIA + + W+G+PV
Sbjct: 438 DFEKAGQLR----------DKEIELEGQIQAESSDYNNNPIVNEEDIAQIVASWTGVPVN 487
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T E +L+ LE+ L +R+IGQ++AV A+SRAV+R+RVGLK+PNRP A+ +F GPTGV
Sbjct: 488 KLTESESEMLMHLEDTLHQRLIGQEQAVTAVSRAVRRARVGLKNPNRPIASFIFSGPTGV 547
Query: 671 GKTELAKSLAACYFGS 686
GKTELAKSLAA +FG+
Sbjct: 548 GKTELAKSLAAYFFGA 563
>gi|428201616|ref|YP_007080205.1| chaperone ATPase [Pleurocapsa sp. PCC 7327]
gi|427979048|gb|AFY76648.1| ATPase with chaperone activity, ATP-binding subunit [Pleurocapsa
sp. PCC 7327]
Length = 806
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 263/608 (43%), Positives = 376/608 (61%), Gaps = 75/608 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
VFE F E+A+KA+I +Q EA+ G ++V ++HLLLGLI E E+ I ++
Sbjct: 16 VFEYFNEKAIKAIILAQEEARRAGHNLVGSEHLLLGLIGE--------ETAIAATVLQDL 67
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+++ + + ++ +G P S +PF+ + K +FE A++ +R+ G I EHI
Sbjct: 68 GINLLDT--RRIIEELTGKG-PGYSPTNIPFTPTVKHIFEQALQEARNLGDKSIGSEHIL 124
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKE-GREPSLAKGVRENS-ISGK 258
L + D A +VL R G+D+ ++L+ EL K+ G + + A G +EN I G+
Sbjct: 125 LAIAAAPDTVAAKVLVRQGIDL--------AKLRTELIKKAGEKVTAAVGAQENPPIFGR 176
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ ++ ALE+F DLT A+E L+DPV+GR E++R IQ+L RRTKNNP+L+G
Sbjct: 177 QSQPRA-------ALEEFGTDLTKLAAEGLLDPVVGRTKEVERTIQVLGRRTKNNPVLVG 229
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV +VP L K ++SLDMGL++AG + RGE E RV ++ E+
Sbjct: 230 EPGVGKTAIAEGLAQRIVNGDVPEILKDKHVISLDMGLMLAGTRFRGEFEERVKAVVEEV 289
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+K+G++IL IDE+H L+G+G + G +D +N+LKP+L RGELQC+ +TT DE+R
Sbjct: 290 RKAGNIILVIDEIHNLVGAGAM-----GGAMDAANMLKPALARGELQCLGTTTLDEYRQH 344
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+++ EPS E+ + IL GLR+ YE HH KF+ AI AA L+ RYIS
Sbjct: 345 IERDPALERRFQPIMVGEPSVEETIEILRGLRKNYEEHHKVKFSDRAIEAAAKLADRYIS 404
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR H+ F R + R
Sbjct: 405 DRFLPDKAIDLIDEAGSRVHLRHFSRNR------------------------------GR 434
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
+ D+ D I +S +P VV ++IA + + W+GIPV +I E
Sbjct: 435 TRKDE---GEFDAPVINPQSLVP---------VVDEEEIAQIVASWTGIPVTKIAESESH 482
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ LE +L +R+IGQ++A+ A+SRA++R+RVGLKDPNRP A+ +F GPTGVGKTELAK+
Sbjct: 483 SLLHLEARLHERIIGQEQAIEAVSRAIRRARVGLKDPNRPIASFIFAGPTGVGKTELAKA 542
Query: 679 LAACYFGS 686
LA FGS
Sbjct: 543 LATYLFGS 550
>gi|461753|sp|P35100.1|CLPC_PEA RecName: Full=Chaperone protein ClpC, chloroplastic; AltName:
Full=ATP-dependent Clp protease ATP-binding subunit ClpC
homolog; AltName: Full=Casein lytic proteinase C; Flags:
Precursor
gi|169128|gb|AAA33680.1| nuclear encoded precursor to chloroplast protein [Pisum sativum]
Length = 922
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 289/663 (43%), Positives = 397/663 (59%), Gaps = 58/663 (8%)
Query: 37 MSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRR--KIIPISSVFERFTERAVKAVI 94
MS F + +H ++ + +R+ R + IP ++FERFTE+A+K ++
Sbjct: 46 MSGFSGLRTFNHLNTMMRPGLDFHSKVSKAVSSRRARAKRFIP-RAMFERFTEKAIKVIM 104
Query: 95 FSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHSTNNQD 152
+Q EA+ LG + V T+ +LLGLI E L+S GI + AR V I
Sbjct: 105 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII------- 157
Query: 153 TDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAG 212
+G F A ++PF+ KRV E + E +R G+N+I EH+ LGL +G A
Sbjct: 158 -----GRGSGFV-AVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVAA 211
Query: 213 RVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASA 272
RVL+ LG D ++ V R+ GE A +S++ + S +T
Sbjct: 212 RVLENLGADPTNIR-TQVIRMVGESA--------------DSVTATVGSGSSNNKT--PT 254
Query: 273 LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLA 332
LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+GE GVGKTAIAEGLA
Sbjct: 255 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLA 314
Query: 333 IRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVH 392
RI +VP + K++++LDMGLL+AG K RGE E R+ L+ EI++S D+ILFIDEVH
Sbjct: 315 QRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVH 374
Query: 393 TLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPV 452
TLIG+G +D +N+LKP+L RGELQCI +TT DE+R EKD L RRFQPV
Sbjct: 375 TLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPDLERRFQPV 429
Query: 453 LISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDE 512
+ EP+ ++ ++IL GLRE+YE HH ++T EA+ AA LS +YISDR+LPDKAIDLVDE
Sbjct: 430 KVPEPTVDETIQILKGLRERYEIHHKLRYTDEALIAAAQLSYQYISDRFLPDKAIDLVDE 489
Query: 513 AGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRT-VQAMHEVVQGS--------RLKYDD 563
AGSR + Q L + + +E+R V+ E V+ R K D
Sbjct: 490 AGSRVRL---------QHAQLPEEAKELDKEVRKIVKEKEEYVRNQDFEKAGELRDKEMD 540
Query: 564 VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGL 623
+ A + E E S DE +V DI + S W+GIPV +++ADE L+ +
Sbjct: 541 LKAQISALIEKGKEMSKAETETADEGPIVTEVDIQHIVSSWTGIPVDKVSADESDRLLKM 600
Query: 624 EEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683
E+ L KR+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+LAA Y
Sbjct: 601 EDTLHKRIIGQDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYY 660
Query: 684 FGS 686
FGS
Sbjct: 661 FGS 663
>gi|427722144|ref|YP_007069421.1| ATPase [Leptolyngbya sp. PCC 7376]
gi|427353864|gb|AFY36587.1| ATPase AAA-2 domain protein [Leptolyngbya sp. PCC 7376]
Length = 820
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 270/611 (44%), Positives = 385/611 (63%), Gaps = 51/611 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ R
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLRSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDA--RIEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LGVD++ + V R+ GE A+ +A G SG +
Sbjct: 110 LGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------VAAG------SGGSR 156
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ K+P L++F +LT A + +DPV+GR+ EI+R+IQIL RRTKNNP+L+GE
Sbjct: 157 SNKTP------TLDEFGSNLTQLAKDSKLDPVVGRQKEIERVIQILGRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ E+++
Sbjct: 211 GVGKTAIAEGLAQRISTGDVPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEVRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 271 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K EA++AA L+ RYISDR
Sbjct: 326 RDAALERRFQPVMVGEPSVEETIEILFGLRERYEQHHKLKILDEALDAAAKLADRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGSR + L + +E+R V + E + R +
Sbjct: 386 FLPDKAIDLIDEAGSRVRL---------INSQLPAEAKELDKELRGV--LKEKDEAVRSQ 434
Query: 561 YDDVVASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
D + D +EI ++ D AVV ++IA + + W+G+P+ ++T
Sbjct: 435 EFDKAGELRDREMSIKAEIRAIAASQKEKKTDIDAVVDAEEIAHIVASWTGVPLNKLTES 494
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +E+ L +R+IGQ+EAV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTEL
Sbjct: 495 ESTKLLNMEDTLHQRLIGQEEAVRAVSRAIRRARVGLKNPNRPIASFVFSGPTGVGKTEL 554
Query: 676 AKSLAACYFGS 686
KSLAA +FGS
Sbjct: 555 TKSLAAYFFGS 565
>gi|434389096|ref|YP_007099707.1| ATPase with chaperone activity, ATP-binding subunit [Chamaesiphon
minutus PCC 6605]
gi|428020086|gb|AFY96180.1| ATPase with chaperone activity, ATP-binding subunit [Chamaesiphon
minutus PCC 6605]
Length = 833
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 279/617 (45%), Positives = 387/617 (62%), Gaps = 57/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGINLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE + E + +G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLTKVRT-QVIRMLGETS-------------ETATAGT 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A +S G + L++F +LT A + +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 GA--RSSGSNKTPTLDEFGSNLTQLAHDGKLDPVVGRAKEIERVIQILGRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAIAEGLAQRIANQDIPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 272 RQAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS ++ + IL GLRE+YE HH K T A+ AA L+ RYIS
Sbjct: 327 IERDAALERRFQPVMVGEPSVDETIEILHGLRERYEQHHKLKITDLALEAAAKLADRYIS 386
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R Q +K D +E+R V + E + R
Sbjct: 387 DRFLPDKAIDLMDEAGSRV------RLLNSQLPAAAKELD---KELRKV--LKEKDEAVR 435
Query: 559 LKYDDVVASMGDTSEIVVESSLPS------ASDDDEPAV---VGPDDIAAVASLWSGIPV 609
+ D S+ D EI +++ + S SD+ E V V +DIA + + W+G+PV
Sbjct: 436 SQDFDKAGSLKD-REIEIKAEIKSIAQAKKTSDETEDRVMPEVTEEDIAQIVASWTGVPV 494
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E + L+ +EE L +R+IGQ+EAV A+SRA++R+RVGLK+PNRP A+ +F GPTG
Sbjct: 495 SKLTESESVKLLNMEETLHQRLIGQEEAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTG 554
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL K+LA +FGS
Sbjct: 555 VGKTELTKALATYFFGS 571
>gi|326490347|dbj|BAJ84837.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 603
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 237/348 (68%), Positives = 286/348 (82%), Gaps = 8/348 (2%)
Query: 343 FLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGR 402
+ +KRIMSLD+GLL+AGAKERGELE+R+T+LI E++++GDVILFIDEVH L+GSGT G+
Sbjct: 1 IMQAKRIMSLDIGLLIAGAKERGELESRITSLIREVREAGDVILFIDEVHNLVGSGTAGK 60
Query: 403 GNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDA 462
G LDISNLLKP L RGELQCIA+TT DEHR FEKDKAL RRFQPV + EPSQEDA
Sbjct: 61 GKGAG-LDISNLLKPPLARGELQCIAATTLDEHRMHFEKDKALNRRFQPVFVDEPSQEDA 119
Query: 463 VRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELF 522
V+ILLGLRE YE +H CKFTLEAINAAV+LSARYI DR LPDKAIDL+DEAGSRA IE +
Sbjct: 120 VKILLGLRENYETYHKCKFTLEAINAAVYLSARYIPDRQLPDKAIDLIDEAGSRARIESY 179
Query: 523 KRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLP- 581
++KKE Q+ +L K PD+YWQEI+ VQAMH+VV +++KY + + S + + P
Sbjct: 180 QKKKEGQSSVLLKEPDEYWQEIKAVQAMHDVVLSNKMKYSPNENNQQNAS---LNAEGPR 236
Query: 582 ---SASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAV 638
+ S +EP VVG ++IA VASLWSGIPVQQ+TAD++ +LVGL+++L+KRVIGQD+AV
Sbjct: 237 QDKAESTTEEPIVVGTEEIARVASLWSGIPVQQLTADDKKILVGLDDELRKRVIGQDDAV 296
Query: 639 AAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
AAISRAVKRSRVGL DP+RP A MLFCGPTGVGKTEL K+LAA YFGS
Sbjct: 297 AAISRAVKRSRVGLSDPDRPIATMLFCGPTGVGKTELTKALAASYFGS 344
>gi|423062414|ref|ZP_17051204.1| ATPase AAA-2 domain protein [Arthrospira platensis C1]
gi|406716322|gb|EKD11473.1| ATPase AAA-2 domain protein [Arthrospira platensis C1]
Length = 824
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 266/616 (43%), Positives = 380/616 (61%), Gaps = 60/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FE F+++A+KAV+ SQ EA+ LG + V T+ LLLG+I E + + +D R
Sbjct: 1 MFEYFSDKAIKAVMLSQEEARRLGHNFVGTEQLLLGIIGEGTSIAAKVLSDQNLNLDNTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ SI +G F ++PF+ KRVFE+A++ +R G N+IAPEH
Sbjct: 61 REIESII------------GRGSGFMPP-EIPFTPRAKRVFESAMKEARQLGNNYIAPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL ++G A +VL+ G++ L + L G E + G S S K
Sbjct: 108 ILLGLLQDEEGVAAKVLENFGIERRQLRTELIKNL-------GEEVPASAGGNSRSQSRK 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
TA L ++F +LT A++ +DP++GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 161 TATL-----------DEFSTNLTQLAAQGKLDPIVGRDREIERVIQILGRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ VP L +++++SL+MG L+AG + RGE E R+ ++ EI
Sbjct: 210 EPGVGKTAIAEGLAQRIINGNVPELLENRQVVSLEMGTLVAGTRFRGEFEERLKKIVQEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G++IL IDE+HTL+G+G + +GT +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 270 KANGNIILLIDEIHTLVGAGAI----EGT-MDAANMLKPALARGELQCIGATTLDEYRKY 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLR YE HH + EA+ AA LS RYIS
Sbjct: 325 IERDAALERRFQPVMVGEPSVEETIEILFGLRSAYEQHHRLTISDEAVLAAAKLSHRYIS 384
Query: 499 DRYLPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH 551
DR+LPDKAIDL+DEAGSR + E+ K E + K D +++
Sbjct: 385 DRFLPDKAIDLIDEAGSRVRVMHSKLPPEVRDLKVELSDIVKQK---DVAVQVQDFDKAG 441
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
E ++ LK D + + VE+S+ + +V +DIA V S W+GIPV +
Sbjct: 442 E-LRDRELKCKDQIEAASQ-----VETSIKTN------LIVTEEDIADVLSAWTGIPVTK 489
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L+ +E+ L +R+IGQ EAV+A+SRA++R+RVGLK+PNRP A+ +F GPTGVG
Sbjct: 490 MTESESYKLMHMEDTLHQRLIGQHEAVSAVSRAIRRARVGLKNPNRPIASFIFSGPTGVG 549
Query: 672 KTELAKSLAACYFGSV 687
KTEL K+LA +FGS+
Sbjct: 550 KTELTKALAYYFFGSM 565
>gi|148241887|ref|YP_001227044.1| ATP-dependent Clp protease ATP-binding subunit clpA-like protein
[Synechococcus sp. RCC307]
gi|147850197|emb|CAK27691.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Synechococcus sp. RCC307]
Length = 852
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 274/629 (43%), Positives = 383/629 (60%), Gaps = 60/629 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
G T+ L++F +LT ASE +DPV+GR EI R+IQIL RRTKNNP+L+G
Sbjct: 149 ATGGGGKGSTKTPTLDEFGSNLTQLASEGKLDPVVGRHNEIDRVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI E+P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIHAGEIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + +VIL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RGAANVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV + EPS ED + IL+GLRE+YEAHH K T +A+ AA L RYIS
Sbjct: 324 IERDAALERRFQPVNVGEPSVEDTIEILMGLRERYEAHHRLKITDDAVVAAATLGDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDY 540
DR+LPDKAIDL+DEAGSR + +L + +K+++T + +K +
Sbjct: 384 DRFLPDKAIDLIDEAGSRVRLLNSKLPPAAKELDKQLREVQKDKETAVREQDFTKAGELR 443
Query: 541 WQEIRTVQAMHEVVQGSR---LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDI 597
+E+ + + + Q R S + ++ + + D VV +DI
Sbjct: 444 EKEVELREQIRGITQNRRDEASSEASESGSTSADATTPASTTATADTIQDNSPVVNEEDI 503
Query: 598 AAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNR 657
A + + W+G+PVQ++T E L+ +EE L +R+IGQDEAV A+S+A++R+RVGLK+PNR
Sbjct: 504 AQIVASWTGVPVQKLTESESAKLLNMEETLHQRLIGQDEAVKAVSKAIRRARVGLKNPNR 563
Query: 658 PTAAMLFCGPTGVGKTELAKSLAACYFGS 686
P A+ +F GPTGVGKTEL K+LA+ +FGS
Sbjct: 564 PIASFIFSGPTGVGKTELTKALASYFFGS 592
>gi|86608097|ref|YP_476859.1| Clp protease, ATP-binding subunit ClpC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556639|gb|ABD01596.1| Clp protease, ATP-binding subunit ClpC [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 824
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 276/618 (44%), Positives = 378/618 (61%), Gaps = 63/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
TA S RT+ L++F +LT A E +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 149 TAGGGSSSRTKTPTLDEFGSNLTQLAQEGKLDPVVGRTREIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIVQ +VP L KR++SLD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIVQGDVPDILADKRVISLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G++IL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RNAGNIILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+++ EP+ + + IL GLRE+YE HH K + A++AA L+ +YIS
Sbjct: 324 IERDAALERRFQPIMVGEPTVSETIEILFGLRERYEQHHKLKISDAALDAAAKLADQYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEA SR + I S+ P + QE+R V + E
Sbjct: 384 DRFLPDKAIDLIDEAASRVRL------------INSQLPPAARELDQELRRV--LKEKDA 429
Query: 556 GSRLKYDDVVASMGDTSEIVVES-------SLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
R + D + D + + S E V +D+A V S W+G+P
Sbjct: 430 AVRAQNFDKAGELRDREMEIKQQIRAIAAAKKAEESSRSEMPEVTEEDVAQVVSAWTGVP 489
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E + L+ +EE L +R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 490 VAKLTESESVKLLNMEETLHQRIIGQDEAVRAISRAIRRARVGLKNPNRPIASFIFSGPT 549
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL K+LAA +FGS
Sbjct: 550 GVGKTELTKALAAYFFGS 567
>gi|440684474|ref|YP_007159269.1| ATPase AAA-2 domain protein [Anabaena cylindrica PCC 7122]
gi|428681593|gb|AFZ60359.1| ATPase AAA-2 domain protein [Anabaena cylindrica PCC 7122]
Length = 832
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 267/629 (42%), Positives = 391/629 (62%), Gaps = 57/629 (9%)
Query: 62 NNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAED 121
N+ +P A+ R+ P ++FE FT A++ ++ +Q EA+ LG + V T+ +LLGL+ E
Sbjct: 4 NSISP-TAQAAREQEP--AMFEHFTSEAIRVIMLAQEEARRLGHNFVGTEQILLGLMGEG 60
Query: 122 RHPNG--FLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVF 179
E G+T+ AR V I +G F ++PF+ K +F
Sbjct: 61 TGVAAKVLAELGVTLKDARREVEKII------------GRGSGFVPP-EIPFTPKVKSLF 107
Query: 180 EAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAK 239
E + + S G+N+I EH+ LGL +G A +VL+ LGVD++ + + +SRL ++A
Sbjct: 108 EQSFREAHSLGHNYINTEHLLLGLTESGEGVAAKVLQNLGVDLHAVRSAVISRLGDDVA- 166
Query: 240 EGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEI 299
LA G SP R + ++E+F +LT A E +DPV+GR+ EI
Sbjct: 167 -----VLAGG-------------NSPKRNKNLSIEEFGRNLTKLAQEGKLDPVVGRQKEI 208
Query: 300 QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA 359
+R +QIL RRTKNNP+L+GE GVGKTAIAEGLA RI+ +VP LL+K+++SLDMG ++A
Sbjct: 209 ERTVQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIINQDVPEVLLNKQVISLDMGSVVA 268
Query: 360 GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419
G + RG+ E R+ ++ E++ G++IL IDE+HTL+G+G G +G GLD +N+LKP+L
Sbjct: 269 GTRFRGDFEERLKKIMEEVRSEGNIILVIDEIHTLVGAG----GTEG-GLDAANILKPAL 323
Query: 420 GRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNC 479
RGELQCI +TT DE+R E+D AL RRFQP+L+ EPS E+ ++IL GLR YE HH
Sbjct: 324 ARGELQCIGATTLDEYRKHIERDAALERRFQPILVGEPSIEETIQILYGLRGAYEQHHKV 383
Query: 480 KFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD 539
+ A+ AA LS RYISDR+LPDKAIDL+DEAGSR R + +T +
Sbjct: 384 HISDAAVVAAAELSDRYISDRFLPDKAIDLIDEAGSRV------RLRNSRTA----TDKE 433
Query: 540 YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDD--EPAVVGPDDI 597
+E+ V E + RL+ D + D E+ ++ L + + + +V +DI
Sbjct: 434 LKRELVGVTKSKE--EAVRLQNFDKAGKLRD-QEVEIQGRLYTEETEKNAKTPIVDEEDI 490
Query: 598 AAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNR 657
A + + W+G+PV ++T E LL+ LE+ L KR+IGQ++AV +++RA++R+RVGLK+PNR
Sbjct: 491 AQIVASWTGVPVNKLTESESELLLHLEDTLHKRLIGQEQAVTSVARAIRRARVGLKNPNR 550
Query: 658 PTAAMLFCGPTGVGKTELAKSLAACYFGS 686
P A+ +F GPTGVGKTELAKSLAA +FG+
Sbjct: 551 PIASFIFSGPTGVGKTELAKSLAAYFFGA 579
>gi|392374710|ref|YP_003206543.1| chaperone [Candidatus Methylomirabilis oxyfera]
gi|258592403|emb|CBE68712.1| Chaperone [Candidatus Methylomirabilis oxyfera]
Length = 810
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 265/611 (43%), Positives = 380/611 (62%), Gaps = 55/611 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTERA K +I ++ EA LG + V T+HLLLGLI E G+ + ++
Sbjct: 1 MFERFTERARKVIILAREEAIRLGHNFVGTEHLLLGLIREG--------DGLAVAILKKL 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V+I S + + + G FS A ++PF+ K+V E A+ +RS G+N+I EH+
Sbjct: 53 NVNI--SAVKGEIEKIVSVGSEFSPAGEIPFTPQAKKVLEYAISEARSLGHNYIGTEHLL 110
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A VL+ GV V A A ++ Q L ++ +P+ +
Sbjct: 111 LGLIREGEGIASLVLRDFGVSV----ASAKAQAQELLGEQASKPTTS------------- 153
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
TR AL++F VDLTA A ++ +DPVIGRETEI+R+IQIL RRTKNNP+L+GE+
Sbjct: 154 -------TRTPALDEFGVDLTAMARQDRLDPVIGRETEIERVIQILSRRTKNNPVLIGEA 206
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAI EGLA RIV + VP LL KR++ LD+ ++AG K RG+ E R+ ++ EIQ+
Sbjct: 207 GVGKTAIVEGLAQRIVASNVPETLLRKRVVQLDLAGMVAGTKYRGQFEERLKAVVKEIQQ 266
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
S +ILFIDE+HTL+G+G +D S++LKP+L RGELQCI +TT DE+R E
Sbjct: 267 SQSIILFIDELHTLVGAGAA-----EGAIDASSMLKPALARGELQCIGATTLDEYRRHIE 321
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD+AL RRFQ V + PS E+ +RIL ++++YEAHH T EA+ AA LS RYI+DR
Sbjct: 322 KDRALERRFQAVQVGPPSVEETIRILREIKDRYEAHHCAIITDEAVTAAARLSQRYIADR 381
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAID++DEAGSRA + +T +L + + E+ ++A E R +
Sbjct: 382 FLPDKAIDVIDEAGSRARL---------KTLMLPQDLREMENEVERLRAQKE--DAIRTQ 430
Query: 561 YDDVVASMGDT-----SEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+V A + D+ +E+ + + S E +V +++A + S W+GIP+ QI +
Sbjct: 431 AFEVAARLRDSERKLRTELEEKKAHWKESRAKEKTMVTAEEVAYIVSKWTGIPLYQIEEE 490
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +E+ L KRV+GQ EA+ ++SRA++RSR G+K P+RP + +F GPTGVGKTEL
Sbjct: 491 ESAKLMRMEQDLTKRVVGQIEAIESVSRAIRRSRAGIKSPSRPVGSFIFLGPTGVGKTEL 550
Query: 676 AKSLAACYFGS 686
AK+LA FG+
Sbjct: 551 AKALAEFLFGT 561
>gi|356516495|ref|XP_003526929.1| PREDICTED: chaperone protein ClpC, chloroplastic-like [Glycine max]
Length = 922
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 289/668 (43%), Positives = 398/668 (59%), Gaps = 68/668 (10%)
Query: 31 LQYVNPMSSFFNISMISH-KVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERA 89
L+ NP+ + + H KV S+ + C P ++FERFTE+A
Sbjct: 52 LRTFNPLDTMLRPGIDFHSKVSIATSSRQARATRCVP------------KAMFERFTEKA 99
Query: 90 VKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHS 147
+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + AR V I
Sbjct: 100 IKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII-- 157
Query: 148 TNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVD 207
+G F A ++PF+ KRV E ++E +R G+N+I EH+ LGL
Sbjct: 158 ----------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREG 206
Query: 208 DGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGR 267
+G A RVL+ LG D ++ V R+ GE A +S++ T S G
Sbjct: 207 EGVAARVLENLGADPTNIRT-QVIRMVGESA--------------DSVTA-TVGSGSSG- 249
Query: 268 TRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAI 327
+ LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+GE GVGKTAI
Sbjct: 250 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAI 309
Query: 328 AEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILF 387
AEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ EI++S ++ILF
Sbjct: 310 AEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILF 369
Query: 388 IDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALAR 447
IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R EKD AL R
Sbjct: 370 IDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALER 424
Query: 448 RFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAI 507
RFQPV + EP+ ++ ++IL GLRE+YE HH ++T EA+ AA LS +YISDR+LPDKAI
Sbjct: 425 RFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAI 484
Query: 508 DLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR-TVQAMHEVVQGS--------R 558
DL+DEAGSR + Q L + + +E+R ++ E V+ R
Sbjct: 485 DLIDEAGSRVRL---------QHAQLPEEARELDKEVRQIIKEKEEAVRNQDFEKAGELR 535
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
+ D+ A + E E S DE +V DI + S W+GIPV++++ DE
Sbjct: 536 DREMDLKAQISTLVEKGKEMSKAETEAGDEGPIVTEADIQHIVSSWTGIPVEKVSTDESD 595
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ +EE L KRVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+
Sbjct: 596 RLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKA 655
Query: 679 LAACYFGS 686
LAA YFGS
Sbjct: 656 LAAYYFGS 663
>gi|428309817|ref|YP_007120794.1| chaperone ATPase [Microcoleus sp. PCC 7113]
gi|428251429|gb|AFZ17388.1| ATPase with chaperone activity, ATP-binding subunit [Microcoleus
sp. PCC 7113]
Length = 827
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 266/611 (43%), Positives = 373/611 (61%), Gaps = 47/611 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+FERFT+ A+K + +Q EA+ LG + V T+ +LLGLI E D L+S GITI + R
Sbjct: 1 MFERFTDTAIKVIRLAQEEARRLGHNFVGTEQILLGLIGEADGIAATVLQSLGITIQEVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E + I +G F A ++PF+ +KRV E ++E SR+ G +++ EH
Sbjct: 61 EEIEKII------------GRGSGFV-AVEIPFTPRSKRVLELSLEESRTLGQDYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL LGVD + A + L S
Sbjct: 108 LLLGLIRDGEGVAARVLLNLGVDSKEVRAKVIEML----------------------SEA 145
Query: 259 TAALKSPGRTRASA--LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
L +P RTR L++ +LT A++ +DPV+GR E++R+IQIL RRTKNNPIL
Sbjct: 146 KPTLNAPSRTRTKTPTLDECGTNLTQLAAQGKLDPVVGRRKEVERMIQILVRRTKNNPIL 205
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+AEGLA RI+ +VP+ L K++++LD G L+AG K RGE E R+ +I
Sbjct: 206 IGEPGVGKTALAEGLAQRIINNDVPISLQGKQVLTLDTGSLLAGTKYRGEFEERLKKIIE 265
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ ++IL +DEVHTL+G+G V LD +N+LKP+L RGE+QCI +TT DE+R
Sbjct: 266 EIRSCQNIILMVDEVHTLVGAGAV-----SGSLDAANILKPALARGEIQCIGATTLDEYR 320
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
E+D AL RRFQPV++ EPS E+ + IL GLR++YE HH K + A+ AA LS RY
Sbjct: 321 KYIERDAALERRFQPVMVDEPSVEETIEILYGLRDRYEQHHQIKISDLALEAAAKLSDRY 380
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQG 556
ISDR+LPDKAIDL+DEAGSR I K L K ++ + E +
Sbjct: 381 ISDRFLPDKAIDLIDEAGSRVRI--LNSKVPSSAKSLKKELRQVLKDKGDAIGLQEFSKA 438
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPSASDD-DEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+++ ++ + I E S S +D+ D +V +DIA + + W+GIPV ++T
Sbjct: 439 GQMRAQEIRIQAEIRALIQNEPSNVSDADEVDYAPIVNQEDIAHIVASWTGIPVNKLTES 498
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +E+ L +R++GQ+EAV AISRA++R+RVG+ +PNRP A+ +F GPTGVGKTEL
Sbjct: 499 ESSKLLQMEDILHQRLVGQEEAVKAISRAIRRARVGISNPNRPIASFIFSGPTGVGKTEL 558
Query: 676 AKSLAACYFGS 686
AKSLAA +FGS
Sbjct: 559 AKSLAAYFFGS 569
>gi|149071968|ref|YP_001293474.1| Clp protease ATP binding subunit [Rhodomonas salina]
gi|134302919|gb|ABO70723.1| Clp protease ATP binding subunit [Rhodomonas salina]
Length = 819
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 273/615 (44%), Positives = 381/615 (61%), Gaps = 58/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ L +D++ + V RL G+ A E + G
Sbjct: 108 LLLGLIREGEGVAARVLENLALDLSKVRT-QVIRLLGDTA-------------EVTAGGG 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
K+P LE+F +LT +A+E +DPVIGR+ EI+R+IQIL RRTKNNPIL+G
Sbjct: 154 QNKGKTP------TLEEFGTNLTQKAAEGKLDPVIGRQKEIERVIQILGRRTKNNPILIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ +I EI
Sbjct: 208 EPGVGKTAIAEGLAQRITNRDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIIDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + +VIL IDEVHTLIG+G +G +D +N+LKP+L RGE+QCI +TT +E+R
Sbjct: 268 RVANNVILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGEMQCIGATTLEEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EPS E+ + IL GLR++YE HH + EA++AA + +YI+
Sbjct: 323 IEKDSALERRFQPVMVGEPSVEETIEILYGLRDRYEKHHKLVISDEALSAAAKFADQYIA 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R Q ++ D +EI ++ E V+G
Sbjct: 383 DRFLPDKAIDLIDEAGSRV------RLMHSQLPPAARELDKELREI--LKQKDEAVRGQD 434
Query: 559 LKYDDVVASMGDTS-EI------VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+V + D EI + +S E +VV +DIA + + W+GIPV +
Sbjct: 435 F---EVAGQLRDREMEIKAQIAAIAQSKKGEEDTSKEVSVVTEEDIAQIVAAWTGIPVNK 491
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L+ +E+ L R+IGQDEAV A+S+A++R+RVGLK+PNRP A+ +F GPTGVG
Sbjct: 492 MTRSESEKLLHMEDTLHGRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFSGPTGVG 551
Query: 672 KTELAKSLAACYFGS 686
KTEL K+LA+ +FGS
Sbjct: 552 KTELTKALASYFFGS 566
>gi|333980531|ref|YP_004518476.1| ATPase AAA [Desulfotomaculum kuznetsovii DSM 6115]
gi|333824012|gb|AEG16675.1| ATPase AAA-2 domain protein [Desulfotomaculum kuznetsovii DSM 6115]
Length = 828
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 268/620 (43%), Positives = 363/620 (58%), Gaps = 65/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFT+RA K + +Q EA+ L V T+HLLLGLI E GI DK R
Sbjct: 2 LFGRFTQRAQKVLFLAQEEARRLNYPYVGTEHLLLGLIREGEGVAAKTLASLGIDADKVR 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V + + P ++P + KRV E AV+ +R G+N++ EH
Sbjct: 62 ATVEQMVEKVSG-----------PMPQ--EIPLTPRAKRVLELAVDEARRMGHNYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A R L LG D+N + +V + L +
Sbjct: 109 LLLGLIREGEGVAARALASLGADLNKVRSVIMQML--------------------GGAAG 148
Query: 259 TAALKSPGRTRASA-----LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN 313
PG R A L+QF DLTA A ++ +DPV+GRE EI+R+IQIL RRTKNN
Sbjct: 149 GPVPGQPGTARPQASSTPTLDQFGRDLTALARDDKLDPVVGREKEIERVIQILSRRTKNN 208
Query: 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373
P+L+GE GVGKTAIAEGLA RIVQ VP LL+KR+++LD+ ++AG K RGE E R+
Sbjct: 209 PVLIGEPGVGKTAIAEGLAQRIVQGNVPEVLLNKRVVTLDLASMVAGTKYRGEFEERIKK 268
Query: 374 LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433
+I EI K+G++I+FIDE+HTLIG+G +D +N+LKP+L RGELQCI +TT D
Sbjct: 269 VIDEIIKAGNIIVFIDELHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLD 323
Query: 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493
E+R E+D AL RRFQP+++ EP+ E+ + IL GLR+KYEAHH + T EA+ AA LS
Sbjct: 324 EYRKHIERDPALERRFQPIMVEEPTVEETIAILKGLRDKYEAHHRVRITDEALEAAARLS 383
Query: 494 ARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMH 551
RYI+DR+LPDKAIDLVDEA SR + F + PP+ D + I +Q
Sbjct: 384 DRYITDRFLPDKAIDLVDEASSRVRLRAF-----------TAPPNLKDLEKRIEEIQKEK 432
Query: 552 EVVQGSRLKYDDVVASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
E + + + A + D E+ A+ E VV +DIA + S W+G
Sbjct: 433 EAAVNN--QEFEKAAQLRDQEQQLKKELEARRQDWQAARGKEELVVTEEDIAQIVSSWTG 490
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV+++ +E L+ LEE L +RV+GQDEAV A++R+V+R+R GLKDP RP + +F G
Sbjct: 491 IPVKKLAEEETERLLRLEEILHQRVVGQDEAVRAVARSVRRARAGLKDPKRPIGSFIFLG 550
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELA++LA FG
Sbjct: 551 PTGVGKTELARALAEALFGD 570
>gi|300857273|ref|YP_003782257.1| ATPase [Clostridium ljungdahlii DSM 13528]
gi|300437388|gb|ADK17155.1| predicted ATPase with chaperone activity [Clostridium ljungdahlii
DSM 13528]
Length = 813
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 267/612 (43%), Positives = 371/612 (60%), Gaps = 53/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL-ESGITIDKARE 139
+F RFTERA K ++++Q EA++L V T+H+LLG++ E+ L + + I+ R
Sbjct: 2 MFGRFTERAQKVLVYAQEEAQALQHGYVGTEHILLGILKEEGISRNLLSDMNVNIETVRN 61
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ ++ +G+ ++P + TKR+ E ++ +R+ +N+I+PEHI
Sbjct: 62 FI------------EEYEGRGEINLYNKEIPLTPRTKRLLELSLFEARNLNHNYISPEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
L L +G A +L LGVD N L V L GE + S +
Sbjct: 110 LLALIREAEGVAFTILNNLGVDFNKLRKELVDSLSGEQS-----------------SMNS 152
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+ K L+QF DLT A E +DPVIGR+ E QR+++IL RRTKNNP L+G+
Sbjct: 153 NSTKKENGEPTPTLDQFGRDLTDMAKEGKLDPVIGRDKETQRVLEILSRRTKNNPCLIGD 212
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA +IV +P L KR+++LD+ ++AG+K RGE E R+ ++ EI+
Sbjct: 213 PGVGKTAIAEGLAEKIVSCNIPELLRGKRVVTLDLSSMIAGSKYRGEFEERLKKVMEEIR 272
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
KSG+VILFIDE+HT+IG+G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 273 KSGNVILFIDEIHTIIGAGAAE-----GAIDASNILKPALARGEIQCIGATTIDEYRKYI 327
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+++ EP++E+AV IL GLR+KYEAHH K EAI+AAV+LS RYI+D
Sbjct: 328 EKDAALERRFQPIIVGEPTKEEAVLILKGLRDKYEAHHRVKIIDEAIDAAVNLSDRYITD 387
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
RYLPDKAIDL+DEA ++ I Q I PPD E +A E R+
Sbjct: 388 RYLPDKAIDLIDEAAAKVRI---------QNLI--APPDLKNLEEELEKATKEKEDSIRV 436
Query: 560 KYDDVVASMGDTSEIVVESSLP------SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D E +++ L + VG D IA+V S W+ IPV+++T
Sbjct: 437 QDFEKAASLRD-KEKELKNKLEGLKTNWKTKKEVSTLTVGEDQIASVVSQWTNIPVEKLT 495
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L KRV+GQDEAV +IS+AV+R+RVGLKDP RP + +F GPTGVGKT
Sbjct: 496 EKESERLLKLEEILHKRVVGQDEAVKSISKAVRRARVGLKDPKRPIGSFIFLGPTGVGKT 555
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 556 ELSKALAEAMFG 567
>gi|170076773|ref|YP_001733411.1| endopeptidase Clp, ATP-binding subunit C [Synechococcus sp. PCC
7002]
gi|169884442|gb|ACA98155.1| endopeptidase Clp, ATP-binding chain C, protease regulatory subunit
[Synechococcus sp. PCC 7002]
Length = 821
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 273/614 (44%), Positives = 391/614 (63%), Gaps = 57/614 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +G+ R
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGVAAKVLRSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDA--RIEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LGVD++ + V R+ GE A+ +A G G +
Sbjct: 110 LGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------VAAG------GGSSR 156
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ K+P L++F +LT A + +DPV+GR+ EI+R+IQIL RRTKNNP+L+GE
Sbjct: 157 SNKTP------TLDEFGSNLTQLAKDGKLDPVVGRQNEIERVIQILGRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQRISNGDVPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 271 AGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV++ EPS E+ + IL GLRE+YE HH K EA++AA L+ RYISDR
Sbjct: 326 RDAALERRFQPVMVGEPSVEETIEILFGLRERYEQHHKLKILDEALDAAAKLADRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSK-PPD--DYWQEIRTVQAMHEVVQGS 557
+LPDKAIDL+DEAGSR + I S+ PP+ + +E+R V + + +
Sbjct: 386 FLPDKAIDLIDEAGSRVRL------------INSQLPPEAKELDKELRDV--LKQKDEAV 431
Query: 558 RLKYDDVVASMGDTS-EIVVESSLPSAS----DDDEPAVVGPDDIAAVASLWSGIPVQQI 612
R + D + D EI E +AS + D AVV ++IA + + W+G+P+ ++
Sbjct: 432 RSQDFDKAGELRDREMEIKTEIRAIAASQKEKNSDIDAVVDAEEIAHIVASWTGVPLNKL 491
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGK
Sbjct: 492 TESESTKLLNMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPTGVGK 551
Query: 673 TELAKSLAACYFGS 686
TEL K+LAA +FGS
Sbjct: 552 TELTKALAAYFFGS 565
>gi|356527573|ref|XP_003532383.1| PREDICTED: chaperone protein ClpC, chloroplastic-like [Glycine max]
Length = 919
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 294/675 (43%), Positives = 404/675 (59%), Gaps = 69/675 (10%)
Query: 27 RLPPLQYVNPMSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRR----KIIPISSVF 82
R+P L+ MSSF + ++ + S + P+ RR + +P ++F
Sbjct: 40 RIPALR----MSSFSGLRTLNP------LDSVSRPRHTFPLTTTSRRERAKRCVP-KAMF 88
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAREA 140
ERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + AR
Sbjct: 89 ERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVE 148
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V I +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 149 VEKII------------GRGSGFV-AVEIPFTSRAKRVLELSLEEARQLGHNYIGSEHLL 195
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ L D N++ A V R+ GE A +S+ G T
Sbjct: 196 LGLLREGEGVAARVLENLAADPNNIRA-QVIRMVGEGA--------------DSV-GATV 239
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
S + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+GE
Sbjct: 240 GPGSSNNNKMPTLEEYGTNLTKLAEEGKLDPVMGRQPQIERVTQILGRRTKNNPCLIGEP 299
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ EI++
Sbjct: 300 GVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ 359
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 360 SDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIE 414
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EP+ + ++IL GLRE+YE HH +T +A+ AA LS +YISDR
Sbjct: 415 KDPALERRFQPVKVPEPTVNETIQILKGLRERYEIHHKLHYTDDALVAAAQLSHQYISDR 474
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR-TVQAMHEVVQGS-- 557
+LPDKAIDL+DEAGSR + Q L + + +E+R V+ E V+
Sbjct: 475 FLPDKAIDLIDEAGSRVRL---------QHAQLPEEARELDKEVRQIVKEKEESVRNQDF 525
Query: 558 ------RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
R K D+ A + E E S + DE +V DI + S W+GIPV++
Sbjct: 526 EKAGELRDKEMDLKAQISALIEKGKEMSKAESEAGDEGPMVTEVDIQHIVSSWTGIPVEK 585
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
++ DE L+ +EE L KRVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVG
Sbjct: 586 VSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 645
Query: 672 KTELAKSLAACYFGS 686
K+ELAK+LAA YFGS
Sbjct: 646 KSELAKALAAYYFGS 660
>gi|427740130|ref|YP_007059674.1| chaperone ATPase [Rivularia sp. PCC 7116]
gi|427375171|gb|AFY59127.1| ATPase with chaperone activity, ATP-binding subunit [Rivularia sp.
PCC 7116]
Length = 852
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 267/621 (42%), Positives = 382/621 (61%), Gaps = 54/621 (8%)
Query: 70 RKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--F 127
R R+ PI +FE FT A+K V+ +Q EA+ LG + V T+ +LLGL+ E+
Sbjct: 27 RSAREQEPI--MFEHFTSEAIKVVMLAQEEARRLGHNFVGTEQILLGLLGEETGVAAKVL 84
Query: 128 LESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSR 187
+ G+T+ AR V I +G F ++PF+ K +FE + + +R
Sbjct: 85 TDMGVTLRDARREVEKII------------GRGSGFVPP-EIPFTPKVKTLFEQSFKEAR 131
Query: 188 SRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLA 247
S G+N+I EH+ LGL +G A +VL+ L VD+ L + RL
Sbjct: 132 SLGHNYIGTEHLLLGLTEAGEGVAAKVLQNLDVDLKQLRTAVIRRLG------------- 178
Query: 248 KGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILC 307
E + G S R + + LE+F +LT A+E +DPV+GRE EI+R +Q+L
Sbjct: 179 ----EVASVGAGVGGGSTRRNQMATLEEFGRNLTKLAAEGKLDPVVGREKEIERTVQVLG 234
Query: 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGEL 367
RRTKNNP+L+GE GVGKTAIAEGLA RI +VP L K+++SLDMGL++AG + RG+
Sbjct: 235 RRTKNNPVLIGEPGVGKTAIAEGLAQRIFNNDVPDILQEKQVISLDMGLVVAGTRFRGDF 294
Query: 368 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427
E R+ ++ EI+ +G+++L IDE+HTL+G+G G +G G+D +N+LKP+L RGELQCI
Sbjct: 295 EERLKKIMEEIRSAGNIVLVIDEIHTLVGAG----GMEG-GMDAANILKPALARGELQCI 349
Query: 428 ASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAIN 487
+TT DE+R E+D AL RRFQP+ I EPS ++ + IL GLR YE HHN + EA+
Sbjct: 350 GATTLDEYRKHIERDAALERRFQPIKIGEPSVDETIEILQGLRGAYEQHHNLTISDEALV 409
Query: 488 AAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV 547
AA LS RYI DR+LPDKAIDL+DEAGSR + + + S D Q
Sbjct: 410 AASQLSDRYIQDRFLPDKAIDLIDEAGSRVRL---------RHSMASNDRDLKRQITAVA 460
Query: 548 QAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDE--PAVVGPDDIAAVASLWS 605
+ +E V +L+ D + + D E+ +E L A ++ AVVG +DIA + + W+
Sbjct: 461 KEKNEAV---KLQDFDKASELRD-KEMELEVQLKDAESGEQINRAVVGEEDIAQIVASWT 516
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
G+PV ++T E +L+ LE+ L +R+IGQ++AV A+S+A++R+RVGLK+PNRP A+ +F
Sbjct: 517 GVPVNKLTESESEVLLHLEDTLHQRLIGQEQAVTAVSKAIRRARVGLKNPNRPIASFIFS 576
Query: 666 GPTGVGKTELAKSLAACYFGS 686
GPTGVGKTELAKSLA+ +FGS
Sbjct: 577 GPTGVGKTELAKSLASYFFGS 597
>gi|356508861|ref|XP_003523172.1| PREDICTED: chaperone protein ClpC, chloroplastic-like isoform 1
[Glycine max]
gi|356508863|ref|XP_003523173.1| PREDICTED: chaperone protein ClpC, chloroplastic-like isoform 2
[Glycine max]
Length = 922
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 289/668 (43%), Positives = 398/668 (59%), Gaps = 68/668 (10%)
Query: 31 LQYVNPMSSFFNISMISH-KVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERA 89
L+ NP+ + + H KV S+ + C P ++FERFTE+A
Sbjct: 52 LRTFNPLDTMLRPGIDFHSKVSIATSSRRARATRCVP------------KAMFERFTEKA 99
Query: 90 VKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHS 147
+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + AR V I
Sbjct: 100 IKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII-- 157
Query: 148 TNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVD 207
+G F A ++PF+ KRV E ++E +R G+N+I EH+ LGL
Sbjct: 158 ----------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREG 206
Query: 208 DGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGR 267
+G A RVL+ LG D ++ V R+ GE A +S++ T S G
Sbjct: 207 EGVAARVLENLGADPTNIR-TQVIRMVGESA--------------DSVTA-TVGSGSSG- 249
Query: 268 TRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAI 327
+ LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+GE GVGKTAI
Sbjct: 250 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAI 309
Query: 328 AEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILF 387
AEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ EI++S ++ILF
Sbjct: 310 AEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILF 369
Query: 388 IDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALAR 447
IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R EKD AL R
Sbjct: 370 IDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALER 424
Query: 448 RFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAI 507
RFQPV + EP+ ++ ++IL GLRE+YE HH ++T EA+ AA LS +YISDR+LPDKAI
Sbjct: 425 RFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAI 484
Query: 508 DLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR-TVQAMHEVVQGS--------R 558
DL+DEAGSR + Q L + + +E+R ++ E V+ R
Sbjct: 485 DLIDEAGSRVRL---------QHAQLPEEARELDKEVRQIIKEKEEAVRNQDFEKAGELR 535
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
+ D+ A + E E S + D VV DI + S W+GIPV++++ DE
Sbjct: 536 DREMDLKAQISTLVEKGKEMSKAESEAGDASPVVTEADIQHIVSSWTGIPVEKVSTDESD 595
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ +EE L KRVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+
Sbjct: 596 RLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKA 655
Query: 679 LAACYFGS 686
LAA YFGS
Sbjct: 656 LAAYYFGS 663
>gi|209522992|ref|ZP_03271549.1| ATPase AAA-2 domain protein [Arthrospira maxima CS-328]
gi|209496579|gb|EDZ96877.1| ATPase AAA-2 domain protein [Arthrospira maxima CS-328]
Length = 824
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 265/616 (43%), Positives = 379/616 (61%), Gaps = 60/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FE F+++A+KAV+ SQ EA+ LG + V T+ LLLG+I E + + +D R
Sbjct: 1 MFEYFSDKAIKAVMLSQEEARRLGHNFVGTEQLLLGIIGEGTSIAAKVLSDQNLNLDNTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ SI +G ++PF+ KRVFE+A++ +R G N+IAPEH
Sbjct: 61 REIESII------------GRGSGLMPP-EIPFTPRAKRVFESAMKEARQLGNNYIAPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL ++G A +VL+ G++ L + L G E + G S S K
Sbjct: 108 ILLGLLQDEEGVAAKVLENFGIERRQLRTELIKNL-------GEEVPASAGGNSRSQSRK 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
TA L ++F +LT A++ +DP++GR+ EI+R+IQIL RRTKNNP+L+G
Sbjct: 161 TATL-----------DEFSTNLTQLAAQGKLDPIVGRDREIERVIQILGRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ VP L +++++SL+MG L+AG + RGE E R+ ++ EI
Sbjct: 210 EPGVGKTAIAEGLAQRIINGNVPELLENRQVVSLEMGTLVAGTRFRGEFEERLKKIVQEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G++IL IDE+HTL+G+G + +GT +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 270 KANGNIILLIDEIHTLVGAGAI----EGT-MDAANMLKPALARGELQCIGATTLDEYRKY 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS E+ + IL GLR YE HH + EA+ AA LS RYIS
Sbjct: 325 IERDAALERRFQPVMVGEPSVEETIEILFGLRSAYEQHHRLTISDEAVLAAAKLSHRYIS 384
Query: 499 DRYLPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH 551
DR+LPDKAIDL+DEAGSR + E+ K E + K D +++
Sbjct: 385 DRFLPDKAIDLIDEAGSRVRVMHSKLPPEVRDLKVELSDIVKQK---DVAVQVQDFDKAG 441
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
E ++ LK D + + VE+S+ + +V +DIA V S W+GIPV +
Sbjct: 442 E-LRDRELKCKDQIEAASQ-----VETSIKTN------LIVTEEDIADVLSAWTGIPVTK 489
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L+ +E+ L +R+IGQ EAV+A+SRA++R+RVGLK+PNRP A+ +F GPTGVG
Sbjct: 490 MTESESYKLMHMEDTLHQRLIGQHEAVSAVSRAIRRARVGLKNPNRPIASFIFSGPTGVG 549
Query: 672 KTELAKSLAACYFGSV 687
KTEL K+LA +FGS+
Sbjct: 550 KTELTKALAYYFFGSM 565
>gi|86605369|ref|YP_474132.1| Clp protease, ATP-binding subunit ClpC [Synechococcus sp. JA-3-3Ab]
gi|86553911|gb|ABC98869.1| Clp protease, ATP-binding subunit ClpC [Synechococcus sp. JA-3-3Ab]
Length = 824
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 278/618 (44%), Positives = 376/618 (60%), Gaps = 63/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD++ + V R+ GE A+
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLSKVRT-QVIRMLGETAE------------------V 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
TA S RT+ L++F +LT A E +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 149 TAGGGSSSRTKTPTLDEFGSNLTQLAQEGKLDPVVGRTREIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIVQ +VP L KR++SLD+GLL+AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIVQGDVPDILADKRVVSLDIGLLVAGTKYRGEFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G++IL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RNAGNIILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+++ EPS + + IL GLRE+YE HH K + A+ AA L+ +YIS
Sbjct: 324 IERDAALERRFQPIMVGEPSVSETIEILFGLRERYEQHHKLKISDAALEAAAKLADQYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEA SR + I S+ P + QE+R V + E
Sbjct: 384 DRFLPDKAIDLIDEAASRVRL------------INSQLPPAARELDQELRRV--LKEKDA 429
Query: 556 GSRLKYDDVVASMGDTSEIVVES-------SLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
R + D + D + + S E V +DIA V S W+G+P
Sbjct: 430 AVRAQDFDRAGELRDREMEIKQQIRAIAAAKKAEESSRQEMPEVTEEDIAQVVSAWTGVP 489
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +EE L +R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 490 VAKLTESESEKLLHMEETLHQRIIGQDEAVRAISRAIRRARVGLKNPNRPIASFIFSGPT 549
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL K+LAA +FGS
Sbjct: 550 GVGKTELTKALAAYFFGS 567
>gi|333373136|ref|ZP_08465052.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Desmospora sp.
8437]
gi|332970715|gb|EGK09695.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Desmospora sp.
8437]
Length = 814
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 271/612 (44%), Positives = 374/612 (61%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + T+H+LLGL+ E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHGNIGTEHILLGLVREGEGIAAKALMGLGLGLEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ QG+P + A ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 KEVESLI----------GRGQGQPTNIA----YTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G + V + SG
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS----------TEAVSSHQASGS 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A +P L+ DLTA A E+ +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 157 GA--NTP------TLDSLAQDLTAAAKEDKLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA +I E P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAVAEGLAQKIHDGETPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS E+ + IL GLR++YEAHH K T EAI A+V LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDEPSSEETILILKGLRDRYEAHHRVKITDEAIEASVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + F + PPD E + + E +
Sbjct: 384 DRFLPDKAIDLIDEAASKVRLSSF-----------TVPPDLKEMEQKLEEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASDDD--EPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + + +ES+ +D + VGP+DIA V + W+GIPV+++
Sbjct: 433 SQEFEKAASLRDKEQKLREELESTRNRWKEDQGKTDSEVGPEDIAEVVANWTGIPVRKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ LEE L KRVIGQDEAV ++SRA++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEESDRLLNLEEILHKRVIGQDEAVLSVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|374249468|ref|YP_005088687.1| clpC gene product [Phaeocystis antarctica]
gi|340008159|gb|AEK26791.1| Clp protease ATP binding subunit [Phaeocystis antarctica]
Length = 830
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 268/622 (43%), Positives = 386/622 (62%), Gaps = 67/622 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E P G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGSGVGPKILKSMGVKLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KR E ++E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRCLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL++L DVN + +L+ E+ + +L + + NS S
Sbjct: 108 LLLGLIVEGEGVAARVLEQL--DVN------LPKLRTEIIR-----ALGENTKVNSDS-- 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ R+++ L++F +LT +A + +DPV+GRE EI+R+IQIL RRTKNNP+L+G
Sbjct: 153 -----NANRSKSPTLDEFGTNLTQKALDGKLDPVVGREKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L K +++LD+GLL+AG K RGE E R+ ++ E+
Sbjct: 208 EPGVGKTAIAEGLAQRIANRDVPDTLEGKLVVALDIGLLIAGTKYRGEFEERLKRIMEEV 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
SG++IL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT +E+R
Sbjct: 268 STSGEIILVIDEVHTLIGAGAA-----EGAIDAANILKPALSRGELQCIGATTIEEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV+++EPS ++ + IL GLR++YE HH + EA+ AA + +YI+
Sbjct: 323 IEKDAALERRFQPVMVNEPSVDETIEILFGLRDRYERHHKLTISDEALTAAAKFADQYIA 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAIDL+DEAGSR + F+ ++ E + L K D IR+ E+
Sbjct: 383 DRFLPDKAIDLIDEAGSRVRLMSFRLPAVAKQLEDEKRELLKSKD---AAIRSQD--FEL 437
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA---------VVGPDDIAAVASLW 604
RL+ ++ A +++ + SA D PA +V +DIA + S W
Sbjct: 438 AGKLRLRELEINAQ--------IQAVIWSAKGGDTPADQDQKVEAPIVTEEDIAQIVSSW 489
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+G+PV ++T E L+ +EE L R+IGQDEAVAA+S+A++R+RVGLK+PNRP A+ +F
Sbjct: 490 TGVPVNKLTRSESDKLLNMEETLHGRIIGQDEAVAAVSKAIRRARVGLKNPNRPIASFIF 549
Query: 665 CGPTGVGKTELAKSLAACYFGS 686
GPTGVGKTEL K+LA+ +FGS
Sbjct: 550 AGPTGVGKTELTKALASYFFGS 571
>gi|399212|sp|P31541.1|CLPAA_SOLLC RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA
homolog CD4A, chloroplastic; Flags: Precursor
gi|170433|gb|AAA34160.1| ATP-dependent protease (CD4A) [Solanum lycopersicum]
Length = 926
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 282/625 (45%), Positives = 388/625 (62%), Gaps = 57/625 (9%)
Query: 74 KIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-G 131
+ +P ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G
Sbjct: 87 RFVP-KAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMG 145
Query: 132 ITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGY 191
I + AR V I +G F A ++PF+ KRV E ++E +R G+
Sbjct: 146 INLKDARVEVEKII------------GRGSGFI-AVEIPFTPRAKRVLELSLEEARQLGH 192
Query: 192 NFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVR 251
N+I EH+ LGL +G A RVL+ LG D ++ V R+ GE S A G
Sbjct: 193 NYIGSEHLLLGLLREGEGVAARVLENLGADPTNIR-TQVIRMVGE-------SSEAVGA- 243
Query: 252 ENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTK 311
S+ G T+ LK P LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTK
Sbjct: 244 --SVGGGTSGLKMP------TLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTK 295
Query: 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV 371
NNP L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+
Sbjct: 296 NNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERL 355
Query: 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431
L+ EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT
Sbjct: 356 KKLMEEIKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATT 410
Query: 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491
DE+R EKD AL RRFQPV + EPS ++ ++IL GLRE+YE HH +T EAI AA
Sbjct: 411 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLHYTDEAIEAAAK 470
Query: 492 LSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAM 550
LS +YISDR+LPDKAIDL+DEAGSR + + L + + +E+R + +
Sbjct: 471 LSHQYISDRFLPDKAIDLIDEAGSRVRL---------RHAQLPEEARELEKELRQITKEK 521
Query: 551 HEVVQGSRLKY-----DDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVA 601
+E V+G + D + S ++ ++ S ++ + GP DI +
Sbjct: 522 NEAVRGQDFEKAGELRDREMDLKAQISALIDKNKEKSKAESEAGDAAGPIVTEADIQHIV 581
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
S W+GIPV++++ DE L+ +EE L RVIGQDEAV AISRA++R+RVGLK+PNRP A+
Sbjct: 582 SSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIAS 641
Query: 662 MLFCGPTGVGKTELAKSLAACYFGS 686
+F GPTGVGK+ELAKSLA YFGS
Sbjct: 642 FIFSGPTGVGKSELAKSLATYYFGS 666
>gi|30468134|ref|NP_849021.1| Clp protease ATP binding subunit [Cyanidioschyzon merolae strain
10D]
gi|30409234|dbj|BAC76183.1| ATP-dependent clp protease ATP-binding subunit (chloroplast)
[Cyanidioschyzon merolae strain 10D]
Length = 821
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 264/617 (42%), Positives = 381/617 (61%), Gaps = 60/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E G+ + +AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGLAARALKTLGVDLKEAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E +++ +R +N+I EH
Sbjct: 61 VEVEKI------------IGRGSGFV-AVEIPFTPRAKRVLELSLDEARILSHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ L ++ + L E E + G
Sbjct: 108 LLLGLIREGEGVAARVLESLGVDLATLRSLVLRMLD-----ETSEVVIGGGY-------- 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
R+R LE+F V+LT A E +DPV+GRE EI+R+IQIL RRTKNNP+L+G
Sbjct: 155 -------SRSRTPTLEEFGVNLTELAMEGELDPVVGREKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L ++++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQRIADRDIPDILEDMKVITLDIGLLVAGTKYRGEFEERLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
++ G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT +E+R
Sbjct: 268 REVGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLEEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EP+ ++ + IL GLR++YE HH + + A+ AA LS++YI+
Sbjct: 323 IEKDAALERRFQPVMVGEPTVDETIEILKGLRDRYEEHHRVRISDAALEAAAKLSSQYIA 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAGSR + +K L K + +E+R V + + + R
Sbjct: 383 DRYLPDKAIDLIDEAGSRVRLMYYK---------LPKVTLELDKELREVMRLKD--EMIR 431
Query: 559 LKYDDVVASMGD-TSEIVVESSLPSASDDDEPA--------VVGPDDIAAVASLWSGIPV 609
+ ++ A + D EI + + S +E VV +DIA + + W+GIPV
Sbjct: 432 EDHFEIAAELRDREKEIRSQIMAMTKSHREETQEQILQARPVVSEEDIAQIVASWTGIPV 491
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+++T E L+ +EE L +R++GQ+EAV+A+S+A++R+RVGLK+PNRP A+ +F GPTG
Sbjct: 492 KKLTRSESEKLLHMEETLHQRIVGQNEAVSAVSKAIRRARVGLKNPNRPIASFIFSGPTG 551
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL K+LA+ +FGS
Sbjct: 552 VGKTELTKALASYFFGS 568
>gi|374320677|ref|YP_005073806.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
terrae HPL-003]
gi|357199686|gb|AET57583.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
terrae HPL-003]
Length = 814
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 264/612 (43%), Positives = 370/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALIGLGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVETLIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G ++S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLGS---------------SEAVSSH 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 152 HGA---PANVSTPTLDSLARDLTASAKENNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQKIIANEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+++LFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIVLFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+AV+IL GLR++YEAHH K T EAI AAV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPSPEEAVQILYGLRDRYEAHHRVKITDEAIEAAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ E R E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLNSY-----------TVPPNLKQLENRLEDIRKEKDSAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDE-----PAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ DT + + E + + E + V P+DIA V ++W+G+PV Q+
Sbjct: 433 SQEFEKAAALRDTEQKIREELDVTKNQWKEQQGRTDSEVTPEDIAQVVAIWTGVPVSQLK 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE L RVIGQDEAV A+SRA++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETHRLLNMEELLHGRVIGQDEAVKAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESMFG 564
>gi|428319462|ref|YP_007117344.1| ATPase AAA-2 domain protein [Oscillatoria nigro-viridis PCC 7112]
gi|428243142|gb|AFZ08928.1| ATPase AAA-2 domain protein [Oscillatoria nigro-viridis PCC 7112]
Length = 822
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 264/612 (43%), Positives = 377/612 (61%), Gaps = 55/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFTE+A+KA++ +Q EA+ LG + V T+ +LLGL+ E L+ G+ + +AR
Sbjct: 1 MFERFTEQAIKAIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAKVLLDMGLNLKEAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ +I +G F ++PF+ KR+FE A+ +R G+N+I EH
Sbjct: 61 NEIENII------------GRGSGFLPP-EIPFTPRVKRIFETALNEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL D+G A +VL+ LG+D + V R GE+A G R +S
Sbjct: 108 ILLGLIQDDEGVAAKVLQNLGIDRQRVRT-QVIRAVGEVAA-------VPGGRGDS---- 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
G + LE+F +LT A+ +DPV+GRE EI+R+IQ+L RRTKNNP+L+G
Sbjct: 156 -------GDRKIPTLEEFGTNLTKLAAAGKLDPVVGRENEIERVIQVLGRRTKNNPVLVG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA RIV VP L K+++SLDMG L+AG K RGE E R+ +++EI
Sbjct: 209 EPGVGKTALAEGLAQRIVNRNVPEILEDKQVISLDMGSLIAGTKFRGEFEERLAKIMAEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G++IL IDE+HTL+G+G + +G+ +D SN+LKP+L RGELQC+ +TT DE+R
Sbjct: 269 RAAGNIILVIDEIHTLVGAGAI----QGS-MDASNMLKPALARGELQCVGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+ + EPS + + IL GLR YE HH + A+ AA LS RYI+
Sbjct: 324 IERDAALERRFQPIKVGEPSVAETIEILYGLRSAYEQHHRLTISDAALEAAATLSDRYIN 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R QT PP+ + + E R
Sbjct: 384 DRFLPDKAIDLIDEAGSRV------RVMNSQT-----PPEVKELKKQLPAVTKEKDAAVR 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIPVQQITA 614
+ D + D E+ +E+ + +A+ + P +DIA + + W+G+PV ++T
Sbjct: 433 EQDFDKAGKLRD-RELEIEAEIAAATINKSQLKTSPTVTEEDIAHIVANWTGVPVSKLTE 491
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E LL+ +E+ L +R+IGQ+EAV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTE
Sbjct: 492 SESELLLHMEDTLHQRLIGQEEAVTAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTE 551
Query: 675 LAKSLAACYFGS 686
L K+LA +FGS
Sbjct: 552 LTKALATYFFGS 563
>gi|424827469|ref|ZP_18252273.1| negative regulator of genetic competence MecB/ClpC [Clostridium
sporogenes PA 3679]
gi|365980083|gb|EHN16120.1| negative regulator of genetic competence MecB/ClpC [Clostridium
sporogenes PA 3679]
Length = 811
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 265/614 (43%), Positives = 368/614 (59%), Gaps = 56/614 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLE-SGITIDKARE 139
+F RFTERA K ++ +Q EA+ V T+H+LLG++ ED L SGIT DK R+
Sbjct: 2 MFGRFTERAQKVLMNAQEEAEKFKHGYVGTEHILLGILIEDGVAKQLLNNSGITEDKVRQ 61
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ + +G+ ++P + TKR+ E ++ +R+ +N+I PEHI
Sbjct: 62 LI------------ERYEGKGEMDLYKNEIPLTPRTKRLLEMSLLEARNLNHNYITPEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGE--LAKEGREPSLAKGVRENSISG 257
LGL +G A +L LG+DV L + L GE L EG S
Sbjct: 110 LLGLIREAEGVAFTILSNLGLDVERLKKELIKNLSGEEMLKDEG--------------SK 155
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
KT+ +P L+QF DLT A E IDPVIGR+ E QR+++ILCRRTKNNP L+
Sbjct: 156 KTSKSSTP------TLDQFGRDLTEMAEEGKIDPVIGRDKETQRVLEILCRRTKNNPCLI 209
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA I+ +P L +KR+++LD+ ++AGAK RGE E R+ ++ E
Sbjct: 210 GEPGVGKTAIAEGLAQNIINGNIPEILKNKRVVTLDLTSMIAGAKYRGEFEDRLKKIMEE 269
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++ S D ILFIDE+HT++G+G +D +N+LKP+L RGE+QCI +TT DE+R
Sbjct: 270 VRNSKDTILFIDEIHTIVGAGAAE-----GAIDAANILKPALARGEIQCIGATTLDEYRK 324
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EP++E+ + IL GLR+KYEAHH KFT +AI AAV+LS RYI
Sbjct: 325 YIEKDSALERRFQPINVGEPTKEETIEILKGLRDKYEAHHRVKFTDDAIYAAVNLSDRYI 384
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
DR+LPDKAIDL+DEAGS+ IE L PPD E + + + E
Sbjct: 385 RDRFLPDKAIDLIDEAGSKVRIE-----------NLIAPPDLKNIEEQLDKVVKEKEDAI 433
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQI 612
R++ + A++ D + + E D + +V IA+V S W+ IPV ++
Sbjct: 434 RVQDFEKAANLRDKEKELKEKLEGLKKDWNAEKEGSNLIVSEQQIASVVSKWTNIPVNKL 493
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ LE+ L RVIGQ+EA+ ++S++V+R+RVGLKDP RP + +F GPTGVGK
Sbjct: 494 TEKESERLLKLEDILHNRVIGQEEAIKSVSKSVRRARVGLKDPKRPIGSFIFLGPTGVGK 553
Query: 673 TELAKSLAACYFGS 686
TEL K+LA FG+
Sbjct: 554 TELTKALAEAMFGN 567
>gi|298490318|ref|YP_003720495.1| ATPase AAA-2 domain-containing protein ['Nostoc azollae' 0708]
gi|298232236|gb|ADI63372.1| ATPase AAA-2 domain protein ['Nostoc azollae' 0708]
Length = 815
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 259/609 (42%), Positives = 382/609 (62%), Gaps = 52/609 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT A++ ++ +Q EA+ LG + V T+ +LLGL+ E E G+T+ AR
Sbjct: 1 MFEHFTSEAIRVIMLAQEEARRLGHNFVGTEQILLGLMGEGTGVAAKVLAELGVTLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F ++PF+ K +FE + + S G+N+I EH
Sbjct: 61 REVEKII------------GRGSGFVPP-EIPFTPKVKSLFEQSFREAHSLGHNYINTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL+ LGV++ + A +SRL G + ++ G ++SG
Sbjct: 108 LLLGLTEAGEGVAAKVLQNLGVELQGIRAAVISRL-------GEDVTVFAG----TVSGS 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
R + ++E+F +LT A + +DPV+GR+ EI+R +QIL RRTKNNP+L+G
Sbjct: 157 K-------RNQNLSIEEFGRNLTKMAQDGKLDPVVGRQREIERTVQILGRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ +VP LL+K+++SLDMGLL+AG + RG+ E R+ ++ EI
Sbjct: 210 EPGVGKTAIAEGLAQRIINQDVPEVLLNKQVISLDMGLLVAGTRFRGDFEERLKKIMDEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ G++IL IDE+HTL+G+G G +G GLD +N+LKP+L RGELQCI +TT DE+R
Sbjct: 270 RSEGNIILVIDEIHTLVGAG----GTEG-GLDAANILKPALARGELQCIGATTLDEYRKH 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+L+ EPS + + IL GLR YE HH + A+ A LS RYIS
Sbjct: 325 IERDAALERRFQPILVGEPSVGETIEILYGLRSAYEQHHKVTISDAAVVVAAQLSDRYIS 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCI-LSKPPDDYWQEIRTVQAMHEVVQGS 557
DR+LPDKAIDL+DEAGSR + + ++ + L D + IR + + + S
Sbjct: 385 DRFLPDKAIDLIDEAGSRVRLRHSRIINNKEIKLQLKNISKDKAEAIR----VQDFGKAS 440
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADER 617
+L +++ ++I +E +L + A+V +DIA + + W+G+PV ++T E
Sbjct: 441 KLNQEELELQ----AKIDLEDNLQTVK-----AIVDEEDIAQIVASWTGVPVNKLTESES 491
Query: 618 MLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAK 677
LL+ LE+ L KR+IGQ++AVAA+SR+++R+RVGLK+P RP A+ +F GPTGVGKTELAK
Sbjct: 492 ELLLHLEDTLHKRLIGQEQAVAAVSRSIRRARVGLKNPKRPIASFIFSGPTGVGKTELAK 551
Query: 678 SLAACYFGS 686
+LAA +FG+
Sbjct: 552 ALAAYFFGA 560
>gi|113476893|ref|YP_722954.1| ATPase [Trichodesmium erythraeum IMS101]
gi|110167941|gb|ABG52481.1| ATPase AAA-2 [Trichodesmium erythraeum IMS101]
Length = 825
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 262/613 (42%), Positives = 389/613 (63%), Gaps = 55/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+++K ++ +Q EA+ LG + V T+ +LLGLI E +GI +E
Sbjct: 1 MFERFTEQSIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGIASKVLKEN 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + N + + +G F+ A ++PF+ KR+ E ++E +R +N+I EH+
Sbjct: 53 GVNLKDARN--EVEKIIGRGSGFTPA-EIPFTPRVKRMLEISLEEARKLDHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A +VL LGVD + + L GE+A ++A G G T
Sbjct: 110 LGLLQDSEGVAAKVLDNLGVDKGKIRTQVIRSL-GEVA------AVAPG-------GST- 154
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
P +A LE+F DLT A+E IDP++GR+TEI+R+IQ+L RRTKNNP+L+GE
Sbjct: 155 ----PSGKKAVTLEEFGTDLTKLAAEGKIDPIVGRKTEIERVIQVLGRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTA+AEGLA RI+ +VP L +K+++SL++G L+AG + RGE E R+ ++ EI+
Sbjct: 211 GVGKTALAEGLAQRIINQDVPDILENKQVVSLNIGSLIAGTRFRGEFEERLKKIMDEIRA 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++IL IDE+HT++G+G + +G+ +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 271 NGNIILVIDEIHTVVGAGAI----EGS-MDAANILKPALARGELQCIGATTLDEYRKHIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV + EPS E + IL G+R YE HH + EA+ AA LS RYISDR
Sbjct: 326 RDAALERRFQPVKVGEPSVEQTIEILYGVRSAYEQHHRLTISDEALRAAAQLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEV 553
+LPDKAIDL+DEAGSR + +L + ++E LS+ D + +R +
Sbjct: 386 FLPDKAIDLIDEAGSRVRVKNSMVSPQLRELRRE-----LSRVIKDKEETVR----QQDF 436
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ S+L+ + +G +EI +S + + VV DDIA + + W+G+PV ++T
Sbjct: 437 EKASQLRDRE----LGIQAEIEETTSNKQDKKNSKSPVVTEDDIADIVASWTGVPVSKLT 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E+ L +R+IGQ++AV A+SRA++R+RVGLK+P RP A+ +F GPTGVGKT
Sbjct: 493 ESESEKLLHIEDTLHQRLIGQEDAVKAVSRALRRARVGLKNPKRPIASFIFSGPTGVGKT 552
Query: 674 ELAKSLAACYFGS 686
EL K+LAA +FGS
Sbjct: 553 ELTKALAAYFFGS 565
>gi|17229455|ref|NP_486003.1| endopeptidase Clp ATP-binding chain [Nostoc sp. PCC 7120]
gi|17131053|dbj|BAB73662.1| endopeptidase Clp ATP-binding chain [Nostoc sp. PCC 7120]
Length = 814
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 261/609 (42%), Positives = 377/609 (61%), Gaps = 53/609 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT A+K ++ +Q EA+ LG + V T+ +LLGL+ E E G+T+ AR
Sbjct: 1 MFEHFTSEAIKVIMLAQEEARRLGHNFVGTEQILLGLMGEGTGVAAKVLTEMGVTLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F ++PF+ K +FE + + + G N+I EH
Sbjct: 61 REVEKII------------GRGSGFVPP-EIPFTPKVKSLFEQSFREAHNLGNNYINTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL+ LGVD+ + + + RL G +P++ G G
Sbjct: 108 LLLGLTEAGEGVAAKVLQNLGVDLKSVRSAVIRRL-------GEDPTVVVG------GGG 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ ++P +E+F +LT A E +DPV+GR+ EI+R +QIL RRTKNNP+L+G
Sbjct: 155 SRRNQTP------MMEEFGRNLTKLAKEGKLDPVVGRQKEIERTVQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ +VP L K+++SLDMG L+AG + RG+ E R+ ++ E+
Sbjct: 209 EPGVGKTAIAEGLAQRIINQDVPDILQDKQVVSLDMGSLVAGTRFRGDFEERIKKIVEEV 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G++IL IDE+HTL+G+G G +G GLD +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RSAGNIILVIDEIHTLVGAG----GTEG-GLDAANILKPALARGELQCIGATTLDEYRQY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+++ EPS + + IL GLR YE HH + EA+ AA L+ RYIS
Sbjct: 324 IERDAALERRFQPIMVGEPSVAETIDILYGLRGAYEQHHKVHISDEAVVAAAQLADRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR + + +S + Q ++ +E V R
Sbjct: 384 DRFLPDKAIDLIDEAGSRVRL---------RNSQISPNKELKRQLTDITKSKNEAV---R 431
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDE-PAVVGPDDIAAVASLWSGIPVQQITADER 617
L+ D A + D EI +E+ L +A+ VV +DIA + + W+G+PV ++T E
Sbjct: 432 LQDFDKAAKLRD-EEIALETELQAATTGQTIKPVVDEEDIAQIVASWTGVPVNKLTESES 490
Query: 618 MLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAK 677
LL+ LE+ L KR+IGQ++AV ++SRA++R+RVGLK PNRP A+ +F GPTGVGKTELAK
Sbjct: 491 ELLLHLEDTLHKRLIGQEQAVTSVSRAIRRARVGLKSPNRPIASFIFSGPTGVGKTELAK 550
Query: 678 SLAACYFGS 686
+LAA +FG+
Sbjct: 551 ALAAYFFGA 559
>gi|354564772|ref|ZP_08983948.1| ATPase AAA-2 domain protein [Fischerella sp. JSC-11]
gi|353549898|gb|EHC19337.1| ATPase AAA-2 domain protein [Fischerella sp. JSC-11]
Length = 820
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 272/615 (44%), Positives = 385/615 (62%), Gaps = 60/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT A+K V+ +Q EA+ LG + V T+ +LLGL+ E E G+T+ +AR
Sbjct: 1 MFEHFTSEAIKVVMLAQEEARRLGHNFVGTEQILLGLLGEGNGVAAKVLTELGVTLKEAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G + ++PF+ K +FE A + +RS G+N+I EH
Sbjct: 61 REVERII------------GRGSGYLPP-EIPFTPKVKTLFEQAFKEARSLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL+ LGVD+ ++ + + RL GE+ P G SG
Sbjct: 108 LLLGLTEAGEGVAAKVLQNLGVDLKNIRSTVI-RLLGEVT-----PMTVGG------SGS 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ SP RT+ LE+F +LT A E +DPV+GRE EI+R IQIL RRTKNNP+L+G
Sbjct: 156 S----SPRRTQTLTLEEFGRNLTKLAQEGKLDPVVGREKEIERAIQILGRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L K+++SLDMGLL+AG + RG+ E R+ ++ EI
Sbjct: 212 EPGVGKTAIAEGLAQRIHNQDVPDILQDKQVISLDMGLLVAGTRFRGDFEERLKKIMDEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ ++IL IDE+HTL+G+G G +G G+D +N+LKP+L +GELQCI +TT DE+R
Sbjct: 272 RSERNIILVIDEIHTLVGAG----GVEG-GMDAANILKPALAKGELQCIGATTLDEYRQH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+++ EPS ED + IL GLR YE HH + T +A+ AA +LS RYIS
Sbjct: 327 IERDAALERRFQPIMVGEPSVEDTIVILQGLRSVYEQHHRVEITDQALVAAANLSDRYIS 386
Query: 499 DRYLPDKAIDLVDEAGSRAHIE----LFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
DR+LPDKAIDL+DEAGSR + R+ +++ ++K D
Sbjct: 387 DRFLPDKAIDLIDEAGSRVRLRSSMVAANREIKRELATVTKNKD---------------- 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA---VVGPDDIAAVASLWSGIPVQQ 611
+ R + D A + D E+ +E+ L + D+ VV +DIA + + W+G+PV +
Sbjct: 431 EAVRAQDFDKAAELRD-RELELEAQLADTTQSDKSVNRLVVNEEDIAQIVAAWTGVPVNK 489
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E +L+ LE+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVG
Sbjct: 490 LTESESEMLLHLEDTLHQRLIGQEQAVTAVSRAIRRARVGLKNPNRPIASFVFSGPTGVG 549
Query: 672 KTELAKSLAACYFGS 686
KTELAKSLAA +FGS
Sbjct: 550 KTELAKSLAAYFFGS 564
>gi|308071007|ref|YP_003872612.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
polymyxa E681]
gi|305860286|gb|ADM72074.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
polymyxa E681]
Length = 814
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 262/612 (42%), Positives = 371/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALIGLGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVETLIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G ++S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLGS---------------SEAVSSH 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 152 HGA---PANVSTPTLDSLARDLTASAKENNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQKIIANEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+++LFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIVLFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+A++IL GLR++YEAHH K T EAI AAV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPSPEEAIQILYGLRDRYEAHHRVKITDEAIEAAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ E R E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLNSY-----------TVPPNLKQLENRLEDIRKEKDSAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDE-----PAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ DT + + E + + E + V P+DIA V ++W+G+PV ++
Sbjct: 433 SQEFEKAAALRDTEQKIREELDVTKNQWKEQQGRTDSEVTPEDIAQVVAIWTGVPVSKLK 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE L +RVIGQDEAV A+SRA++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETHRLLNMEELLHERVIGQDEAVKAVSRAIRRARAGLKDPKRPMGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESMFG 564
>gi|11467609|ref|NP_050661.1| Clp protease ATP binding subunit [Guillardia theta]
gi|5921798|sp|O78410.1|CLPC_GUITH RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA
homolog
gi|3602934|gb|AAC35595.1| Clp protease ATP binding subunit (chloroplast) [Guillardia theta]
Length = 819
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 269/612 (43%), Positives = 378/612 (61%), Gaps = 52/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ L +D+ + V RL G+ A+ ++ +G+
Sbjct: 108 LLLGLIREGEGVAARVLENLALDLTKVRT-QVIRLLGDTAEV------------SATNGQ 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T K+P LE+F +LT +A+E +DPVIGR+ EI+R+IQIL RRTKNNPIL+G
Sbjct: 155 TKG-KTP------TLEEFGSNLTQKAAEGKLDPVIGRQKEIERVIQILGRRTKNNPILIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ +I EI
Sbjct: 208 EPGVGKTAIAEGLAQRINNRDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIIDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + +VIL IDEVHTLIG+G +D +N+LKP+L RGE+QCI +TT +E+R
Sbjct: 268 RVANNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGEMQCIGATTLEEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EPS E+ + IL GLR++YE HH + EA++AA + +YI+
Sbjct: 323 IEKDSALERRFQPVMVGEPSVEETIEILYGLRDRYEKHHKLVISDEALSAAAKFADQYIA 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R Q ++ D +EI ++ E V+
Sbjct: 383 DRFLPDKAIDLIDEAGSRV------RLMNSQLPPAARELDKELREI--LKQKDEAVRSQD 434
Query: 559 L----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ D + + S + E +VV +DIA + + W+GIPV ++T
Sbjct: 435 FETAGQLRDREMEIKAQIAAIAHSKKGDEENTKEVSVVTEEDIAQIVAAWTGIPVNKMTR 494
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ +EE L R+IGQDEAV A+S+A++R+RVGLK+PNRP A+ +F GPTGVGKTE
Sbjct: 495 SESEKLLQMEETLHGRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTE 554
Query: 675 LAKSLAACYFGS 686
L K+LA+ +FGS
Sbjct: 555 LTKALASYFFGS 566
>gi|159481126|ref|XP_001698633.1| ClpD chaperone, Hsp100 family [Chlamydomonas reinhardtii]
gi|158282373|gb|EDP08126.1| ClpD chaperone, Hsp100 family [Chlamydomonas reinhardtii]
Length = 997
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 283/627 (45%), Positives = 388/627 (61%), Gaps = 44/627 (7%)
Query: 72 RRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR-HPNGFLES 130
RR+ + + +VFERFTER++K V+ +Q EAK+ G V T+H+LLGL+AE+ NG+L S
Sbjct: 65 RRQALKVQAVFERFTERSIKTVMIAQAEAKAFGHTEVNTEHILLGLVAEESLSKNGYLNS 124
Query: 131 GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRG 190
G++ ++A+ AV +++ + +P S +PFS +++FE A +
Sbjct: 125 GVSSERAKAAVEALF------------GRKRPVSHGESIPFSREVRKMFENATHECKRSN 172
Query: 191 YNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGV 250
N+I+PEHI L + ++ D + RVL L DV L A A RL+G+ E +
Sbjct: 173 VNWISPEHILLAMLSMPDCNGKRVLHSLSADVEGLKAEAGKRLKGDTDAEQAKKKQGAAA 232
Query: 251 RENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT 310
+E + P T E++C DL A IDPV+GR+ E+ R+ QIL RRT
Sbjct: 233 KE----------QGPKMT-----EEYCKDLCAEVRAGRIDPVVGRDREVGRVCQILARRT 277
Query: 311 KNNPILLGESGVGKTAIAEGLAIRIVQ---AEVPVFLLSKRIMSLDMGLLMAGAKERGEL 367
KNNPILLGE GVGKTAIAEGLA IV + +P FL SKRI+ LD+GLL+AGAKERGEL
Sbjct: 278 KNNPILLGEPGVGKTAIAEGLAAAIVHRAASPLPEFLHSKRILQLDVGLLIAGAKERGEL 337
Query: 368 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427
E+RVT LI+EI+++G++IL IDE+HTL+G+G+VGRG G LDI+NL+KP+L RGE Q I
Sbjct: 338 ESRVTKLIAEIREAGNIILMIDEIHTLVGAGSVGRGGGGG-LDIANLVKPALARGEFQVI 396
Query: 428 ASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAIN 487
+TT DEHR E+D AL RRFQPV + EP+ E + IL GL+E+YE HH C +T EA+
Sbjct: 397 GATTLDEHRKYIERDAALERRFQPVTVDEPTPEATLTILQGLKERYERHHRCAYTEEALA 456
Query: 488 AAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQ--------QTCILSKPPDD 539
AAV LS +YI+DR+LPDKAIDL+DEAGSRA I + ++ Q Q + P
Sbjct: 457 AAVALSHKYIADRFLPDKAIDLIDEAGSRARIAAYTARQNQARAGAGGRQQQLTMAPGGA 516
Query: 540 YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAA 599
R Q E + V+ + + E + PS P VVG +DI A
Sbjct: 517 GGDLSRGNQKQEEACINAN---PGVLPACLPQVDYRAELAGPSCEGSVLP-VVGVEDIEA 572
Query: 600 VASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPT 659
+ + W+ IPV++++ E+ L+ + L V+GQ +AV AIS A+ R+R GL P RP
Sbjct: 573 IVAAWTSIPVERMSDGEKERLLNMRHTLASHVVGQADAVEAISTALCRARCGLNLPRRPV 632
Query: 660 AAMLFCGPTGVGKTELAKSLAACYFGS 686
AA+LF GPTGVGKTELAK L+ Y+GS
Sbjct: 633 AALLFVGPTGVGKTELAKVLSEQYYGS 659
>gi|392407856|ref|YP_006444464.1| chaperone ATPase [Anaerobaculum mobile DSM 13181]
gi|390620992|gb|AFM22139.1| ATPase with chaperone activity, ATP-binding subunit [Anaerobaculum
mobile DSM 13181]
Length = 829
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 265/617 (42%), Positives = 375/617 (60%), Gaps = 57/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+++ FTERA + + + REA LG D++ T+H+LLGL+AE + + GI +D+ R
Sbjct: 1 MWQFFTERARRVIQLAHREALRLGHDVIGTEHILLGLLAEGDGVAAHVLMSLGIDLDEVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + +G+P +P S KRV + A+ +R+ G N++ EH
Sbjct: 61 KRVEQL------------VGKGQPKDKPIDLPLSPRAKRVLDLAMREARNMGVNYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG-ELAKEGREPSLAKGVRENSISG 257
I LGL +G A +VL +G+D + + L G E+ + + P L+K
Sbjct: 109 ILLGLLAEGEGIAAQVLMSMGLDTQKVYQEVIRYLSGGEVDQMSQSPGLSK--------- 159
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K + K+P L+Q +DL A +DPVIGRE EIQR+IQIL RRTKNNP L+
Sbjct: 160 KKSHTKTP------TLDQLGIDLVEMARRGELDPVIGREKEIQRVIQILSRRTKNNPCLI 213
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
G+ GVGKTAI EGLA +I EVP L +KRI+ L++G L+AG K RGE E R+ LI E
Sbjct: 214 GDPGVGKTAIVEGLAQKIALGEVPELLKNKRIVQLNIGNLVAGTKYRGEFEERMRKLIKE 273
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++ S DVI+FIDE+HTL+G+G G +G +D +N+LKPSL +GE Q I +TT DE+R
Sbjct: 274 VRDSRDVIVFIDEIHTLVGAG----GAEGA-VDAANILKPSLAKGEFQVIGATTLDEYRK 328
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EP+ ED + IL GLR+KYEAHH K+T A+ AA LSARYI
Sbjct: 329 YIEKDAALERRFQPVFVGEPTIEDTIEILKGLRDKYEAHHRVKYTDAALEAAAKLSARYI 388
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD---DYWQEIRTVQAMHEVV 554
SDR+LPDKAIDL+DEAG+R + PPD + +++ TV+ E
Sbjct: 389 SDRFLPDKAIDLIDEAGARVRLSAM------------NPPDFIKELEKKLETVRKEKEAA 436
Query: 555 QGSRLKYDDVVASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
S+ +++ A++ D + E+ + A + E +V +DIA + S W+GIPV
Sbjct: 437 VASQ-EFEK-AAALRDQERKLSEELEEKRKAWQAKNSQEEPIVDEEDIALIVSEWTGIPV 494
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
Q+T +E L+ +EE++ KR+I Q+EAV+ ++RA++R+R GLKDP RP + LF GPTG
Sbjct: 495 MQLTEEESQRLLRMEEEIHKRIIDQEEAVSVVARAIRRARSGLKDPKRPIGSFLFLGPTG 554
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 555 VGKTELSKALAEFLFGD 571
>gi|255540075|ref|XP_002511102.1| ATP-dependent clp protease, putative [Ricinus communis]
gi|223550217|gb|EEF51704.1| ATP-dependent clp protease, putative [Ricinus communis]
Length = 924
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 281/624 (45%), Positives = 389/624 (62%), Gaps = 48/624 (7%)
Query: 70 RKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFL 128
+K ++ +P ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L
Sbjct: 82 QKAKRFLP-RAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVL 140
Query: 129 ES-GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSR 187
+S GI + AR V I +G F A ++PF+ KRV E ++E +R
Sbjct: 141 KSMGINLKDARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEAR 187
Query: 188 SRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLA 247
G+N+I EH+ LGL +G A RVL+ LG D +++ V R+ GE + P
Sbjct: 188 QLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRT-QVIRMVGESTENIPAPVGP 246
Query: 248 KGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILC 307
G G + LE++ +LT A E +DPV+GR+ +I+R+IQIL
Sbjct: 247 GG----------------GSNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVIQILG 290
Query: 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGEL 367
RRTKNNP L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE
Sbjct: 291 RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIERKKVITLDMGLLVAGTKYRGEF 350
Query: 368 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427
E R+ L+ EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI
Sbjct: 351 EERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCI 405
Query: 428 ASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAIN 487
+TT DE+R EKD AL RRFQPV + EPS ++ ++IL GLRE+YE HH ++T EA+
Sbjct: 406 GATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALV 465
Query: 488 AAVHLSARYISDRYLPDKAIDLVDEAGSR-----AHIELFKRKKEQQTCILSKPPDDYWQ 542
AA LS +YISDR+LPDKAIDL+DEAGSR A + R+ E++ ++K D+ +
Sbjct: 466 AAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEARELEKEVRQITKEKDEAVR 525
Query: 543 EIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVAS 602
+ + E+ R + D+ A + E E S D +V DI + S
Sbjct: 526 S-QDFEKAGEL----RDREMDLRAQIAAIVEKGKEMSKAETEAGDVGPLVNESDIQHIVS 580
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
W+GIPV++++ DE L+ +EE L KRVIGQDEAV AISRA++R+RVGLK+PNRP A+
Sbjct: 581 SWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASF 640
Query: 663 LFCGPTGVGKTELAKSLAACYFGS 686
+F GPTGVGK+ELAK+LAA YFGS
Sbjct: 641 IFSGPTGVGKSELAKALAAYYFGS 664
>gi|75910545|ref|YP_324841.1| UvrB/UvrC protein [Anabaena variabilis ATCC 29413]
gi|75704270|gb|ABA23946.1| UvrB/UvrC protein [Anabaena variabilis ATCC 29413]
Length = 814
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 260/609 (42%), Positives = 377/609 (61%), Gaps = 53/609 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT A+K ++ +Q EA+ LG + V T+ +LLGL+ E E G+T+ AR
Sbjct: 1 MFEHFTSEAIKVIMLAQEEARRLGHNFVGTEQILLGLMGEGTGVAAKVLTEMGVTLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F ++PF+ K +FE + + + G N+I EH
Sbjct: 61 REVEKII------------GRGSGFVPP-EIPFTPKVKSLFEQSFREAHNLGNNYINTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL+ LGVD+ + + + RL G +P++ G G
Sbjct: 108 LLLGLTEAGEGVAAKVLQNLGVDLKSVRSAVIRRL-------GEDPTVVVG------GGG 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ ++P +E+F +LT A E +DPV+GR+ EI+R +QIL RRTKNNP+L+G
Sbjct: 155 SRRNQTP------TIEEFGRNLTKLAKEGKLDPVVGRQKEIERAVQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ +VP L K+++SLDMG L+AG + RG+ E R+ ++ E+
Sbjct: 209 EPGVGKTAIAEGLAQRIINQDVPDILQDKQVISLDMGSLVAGTRFRGDFEERIKKIVEEV 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G++IL IDE+HTL+G+G G +G GLD +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RSAGNIILVIDEIHTLVGAG----GTEG-GLDAANILKPALARGELQCIGATTLDEYRQH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+++ EPS + + IL GLR YE HH + EA+ AA L+ RYIS
Sbjct: 324 IERDAALERRFQPIMVGEPSVAETIDILYGLRGAYEQHHKVHISDEAVVAAAQLADRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR + + +S + Q ++ +E V R
Sbjct: 384 DRFLPDKAIDLIDEAGSRVRL---------RNSQISPNKELKRQLTDITKSKNEAV---R 431
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDE-PAVVGPDDIAAVASLWSGIPVQQITADER 617
++ D A + D EI +E+ L +A+ VV +DIA + + W+G+PV ++T E
Sbjct: 432 VQDFDKAAKLRD-EEIALETELQAATTGQTIKPVVDEEDIAQIVASWTGVPVNKLTESES 490
Query: 618 MLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAK 677
LL+ LE+ L KR+IGQ++AV ++SRA++R+RVGLK PNRP A+ +F GPTGVGKTELAK
Sbjct: 491 ELLLHLEDTLHKRLIGQEQAVTSVSRAIRRARVGLKSPNRPIASFIFSGPTGVGKTELAK 550
Query: 678 SLAACYFGS 686
+LAA +FG+
Sbjct: 551 ALAAYFFGA 559
>gi|332710153|ref|ZP_08430106.1| ATPase with chaperone activity, ATP-binding subunit [Moorea
producens 3L]
gi|332351111|gb|EGJ30698.1| ATPase with chaperone activity, ATP-binding subunit [Moorea
producens 3L]
Length = 795
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 263/608 (43%), Positives = 380/608 (62%), Gaps = 73/608 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT++A+K+++ +Q E + LG +V T+ LLLGLIA+ + G+T++ AR
Sbjct: 1 MFEHFTDKAIKSIMLAQEETRRLGHSLVGTEQLLLGLIAQRTAVAARVLRDFGVTLEDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+V ++ +G S+ ++PF+ K VF+ + + ++ G+N+I EH
Sbjct: 61 YSV------------ENTVGRGSRMVSS-ELPFTPKAKEVFQQSFQEAKQLGHNYIDTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ L + + A +VL LGVD+ L S S+A+ + GK
Sbjct: 108 LLLAIIHDKNSVASQVLVNLGVDLTELRTHVNS-------------SIAELTAATTAKGK 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ + + + + LE+F +LT A+E +DPV+GR+ EI+R++QIL RR+KNNPILLG
Sbjct: 155 GSSFRGNTQNQKATLEEFGTNLTKLAAEGKLDPVVGRQQEIERVVQILGRRSKNNPILLG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ +VP L K+++SLDM LL++G + RG+ E R+ ++SE+
Sbjct: 215 EPGVGKTAIAEGLAQRIISQDVPDLLADKQVISLDMALLVSGTRFRGDFEERLKQVVSEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
Q+SG++IL IDE+HTL+G+G++ +G G+D +NLLKP+L RGELQC+ +TT DE+R
Sbjct: 275 QQSGNIILVIDEIHTLVGAGSL----EG-GMDAANLLKPALARGELQCLGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++SEPS ED + IL GLR YE +H + + +A+ AA LS RYIS
Sbjct: 330 IEKDAALERRFQPVMVSEPSVEDTIDILHGLRSTYEEYHKVQISDQALLAAAQLSDRYIS 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAGSR H+ + SKP SR
Sbjct: 390 DRYLPDKAIDLIDEAGSRVHL------------MHSKP-------------------SSR 418
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
+ + S G ++ ++P +V +DIA + + W+GIPV ++T E
Sbjct: 419 ARAESEWESEGIEGKLSPSPTIP---------IVDQEDIAQIVASWTGIPVNKLTESESA 469
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
LL+ LEE L +R+IGQDEAV A+SRA++R+RVGLKDPNRP A+ +F GPTGVGKTELAKS
Sbjct: 470 LLLHLEETLHERIIGQDEAVTAVSRAIRRARVGLKDPNRPIASFIFSGPTGVGKTELAKS 529
Query: 679 LAACYFGS 686
LA+ FGS
Sbjct: 530 LASYLFGS 537
>gi|317126827|ref|YP_004093109.1| ATPase AAA [Bacillus cellulosilyticus DSM 2522]
gi|315471775|gb|ADU28378.1| ATPase AAA-2 domain protein [Bacillus cellulosilyticus DSM 2522]
Length = 816
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 273/641 (42%), Positives = 389/641 (60%), Gaps = 70/641 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAQEEAMRLGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+V++ S T+ GK ++ ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LVALGLSPEKIQTEVENLIGKGEEKTKQIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL +GV +N A V +L G + + ++ SG +
Sbjct: 110 LGLIREGEGVAARVLNNVGVSLNK-ARQQVLQLLG--------SNESTNNQQQGASGAGS 160
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ +P L+ DLTA A EE IDPVIGR EI+R+IQ+L RRTKNNP+L+GE
Sbjct: 161 NVNTP------TLDSLARDLTAIAKEEQIDPVIGRAKEIERVIQVLSRRTKNNPVLIGEP 214
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L +KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 215 GVGKTAIAEGLAQQIVNNEVPETLRNKRVMTLDMGTVVAGTKYRGEFEDRLKKVMEEIRQ 274
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 275 AGNVILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 329
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ +++++IL GLR++YEAHH + T +AI AAV LS RYISDR
Sbjct: 330 KDAALERRFQPIQVDEPTNDESIQILKGLRDRYEAHHRVEITDDAIEAAVKLSDRYISDR 389
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ ++ M + ++ +R +
Sbjct: 390 FLPDKAIDLIDEAASKVRLRSY-----------TAPPN--------LKEMEQKLEETRKE 430
Query: 561 YDDVV--------ASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSG 606
D V AS+ D + V E L + + E + V +DIA V S W+G
Sbjct: 431 KDAAVQSQEFEKAASLRDNEQRVRE-ELETMKKEWKEKQGQENSEVTTEDIALVVSSWTG 489
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++ +E L+ +EE L RVIGQ+EAV A+S+AV+R+R GLKDP RP + +F G
Sbjct: 490 IPVSKLAEEETERLLKMEEILHNRVIGQEEAVTAVSKAVRRARAGLKDPKRPIGSFIFLG 549
Query: 667 PTGVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
PTGVGKTELA+++A FG +RI + N+ ++
Sbjct: 550 PTGVGKTELARAVAESLFGDEDAIIRIDMSEYMEKHNTSRL 590
>gi|114567873|ref|YP_755027.1| ATPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114338808|gb|ABI69656.1| ATPases with chaperone activity, ATP-binding subunit
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 828
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 269/613 (43%), Positives = 379/613 (61%), Gaps = 37/613 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA AVI +Q EA+ L + T+H+LLGL+ E L SGI ++K R
Sbjct: 1 MFRRFTQRARNAVIHAQEEARQLNHPAIGTEHILLGLLREGEGVGARALLNSGIDLEKVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E + + + + A KP A +P + K+VF A + +R +G N++ EH
Sbjct: 61 EEINRVIGA-------NGEAVEKP---AGDLPVTPRAKKVFNLAFDEARLQGVNYVGTEH 110
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ L + ++G AG+VL +GV ++ + + L G+++ P+ +++ S
Sbjct: 111 LLLAVLREEEGVAGQVLHSMGVKLDQIREQVMLLLGGDVSSTYHNPN----AYQDTASQP 166
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ R++ L+ F DLT ASE +DPVIGR EI+R+IQIL RRTKNNP+L+G
Sbjct: 167 NQQARKRARSKTPTLDSFSRDLTQDASEGRLDPVIGRNNEIERVIQILSRRTKNNPVLIG 226
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTAI EGLA RI+ ++P L +KR+++LD+ ++AG K RGE E R+T +++EI
Sbjct: 227 DPGVGKTAIVEGLAQRIMDNQIPEILSNKRVVALDLSAMVAGTKYRGEFEERLTRIVNEI 286
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ SGDVI+FIDE+HT++G+G +D +N+LKPSL RGE QC+ +TT +E+R
Sbjct: 287 KSSGDVIVFIDELHTIVGAGAA-----EGAIDAANILKPSLARGEFQCVGATTLNEYRKH 341
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+L+ EPS E+++ IL GLR++YEAHH K EAI AA LSARYIS
Sbjct: 342 VEKDAALERRFQPILVEEPSIEESIEILKGLRDRYEAHHGVKIGDEAIEAAAKLSARYIS 401
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF-----KRKKEQQTCILSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAIDL+DEA SR + + +KKE Q +D +E E
Sbjct: 402 DRFLPDKAIDLIDEASSRVRLANYIIPEDLKKKESQL-------EDLIKEKEEAINGQEY 454
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ +RL+ D + D EI E S+ VG D+IAAV S WSGIPV ++
Sbjct: 455 EKAARLR--DEEQKLRD--EIENERKEWSSQRSLNAGSVGEDEIAAVVSSWSGIPVNKLA 510
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E LV +E+ L +RVIGQ+EAV A+SRAV+R+R GLK+P RP + +F GPTGVGKT
Sbjct: 511 EEESERLVQMEDVLHQRVIGQEEAVKAVSRAVRRARAGLKNPKRPIGSFVFLGPTGVGKT 570
Query: 674 ELAKSLAACYFGS 686
ELA+SLA FGS
Sbjct: 571 ELARSLAEAMFGS 583
>gi|113955104|ref|YP_730239.1| Clp protease ATP-binding subunit ClpC [Synechococcus sp. CC9311]
gi|113882455|gb|ABI47413.1| putative Clp protease, ATP-binding subunit ClpC [Synechococcus sp.
CC9311]
Length = 860
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 279/637 (43%), Positives = 387/637 (60%), Gaps = 69/637 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ + V R+ GE A+ G
Sbjct: 108 LLLGLIREGEGVAARVLENLGVDLAKVRT-QVIRMLGETAE----------------VGA 150
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S G T+ L++F +LT A+E +DPV+GR EI R+IQIL RRTKNNP+L+G
Sbjct: 151 GGGGGSKGSTKTPTLDEFGTNLTQLATEAKLDPVVGRHKEIDRVIQILGRRTKNNPVLIG 210
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI
Sbjct: 211 EPGVGKTAIAEGLAQRIQQGDIPDILEEKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEI 270
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 271 KSAGNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 325
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV + EPS D + IL GLRE+YE HH K T A++AA L RYIS
Sbjct: 326 IERDAALERRFQPVTVGEPSIADTIEILRGLRERYEQHHRLKITDAALDAAATLGDRYIS 385
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDY 540
DR+LPDKAIDL+DEAGSR + EL +K+++ + S+ +
Sbjct: 386 DRFLPDKAIDLIDEAGSRVRLLNSKLPPAAKEVDKELRAVQKDKEDAVRDQDFSRAGELR 445
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIV------VESSLPSASDDDEPA---- 590
+E+ + + ++Q SR ++ A+ GD + +S +P
Sbjct: 446 DKEVELREKIRTLLQSSR---EEAPANSGDADQTTDAAAGEAAASAAPEGSTAQPQLLTT 502
Query: 591 -VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSR 649
VV +DIA + + W+G+PVQ++T E + L+ +EE L KR+IGQDEAV A+S+A++R+R
Sbjct: 503 PVVDEEDIAHIVASWTGVPVQKLTESESVKLLNMEETLHKRLIGQDEAVKAVSKAIRRAR 562
Query: 650 VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
VGLK+PNRP A+ +F GPTGVGKTEL K+LAA +FGS
Sbjct: 563 VGLKNPNRPIASFIFSGPTGVGKTELTKALAAYFFGS 599
>gi|378787369|gb|AFC40000.1| Clp protease ATP binding subunit [Porphyra umbilicalis]
Length = 821
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 268/613 (43%), Positives = 377/613 (61%), Gaps = 51/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGL+ E +GI +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEG--------TGIAAQVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 NVNLKDA--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
+GL +G A RVL+ L VDV+ + A + L GE A E ++SG A
Sbjct: 110 MGLVREGEGVAARVLENLAVDVSSIRAEVIQML-GENA-------------EANVSGSNA 155
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ R++ LE+F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+GE
Sbjct: 156 ---TQARSKTPTLEEFGSNLTQMAIEGGLDPVVGRQKEIERVIQILGRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP L K +++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 213 GVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMDEIKS 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ +VIL IDEVHTLIG+G +D +NLLKP+L RGELQCI +TT +E+R E
Sbjct: 273 ADNVILVIDEVHTLIGAGAA-----EGAIDAANLLKPALARGELQCIGATTLEEYRKHIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV++ EPS E+ + IL GLR++YE HH + A+ AA + +YISDR
Sbjct: 328 KDPALERRFQPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRL 559
+LPDKAIDL+DEAGSR + L + +E+R V + E ++
Sbjct: 388 FLPDKAIDLIDEAGSRVRL---------LNSQLPPAARELDKELRAVLKTKDEAIRAQ-- 436
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVASLWSGIPVQQIT 613
KY+ EI + + + S +EP VV DDIA + + W+GIPV ++T
Sbjct: 437 KYETAEQYRAREMEIKAQIAAIAQSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKT
Sbjct: 497 KSESEKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKT 556
Query: 674 ELAKSLAACYFGS 686
EL K+LA+ +FGS
Sbjct: 557 ELTKALASYFFGS 569
>gi|387928140|ref|ZP_10130818.1| Class III stress response-related ATPase, ClpC [Bacillus
methanolicus PB1]
gi|387587726|gb|EIJ80048.1| Class III stress response-related ATPase, ClpC [Bacillus
methanolicus PB1]
Length = 814
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 274/612 (44%), Positives = 378/612 (61%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTN--NQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ ++ + ++ ++ GK S + ++ K+V E +++ +R G++++ EH
Sbjct: 50 LYALGLGSEKIQKEVENLIGTGKEVSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G G + A +S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGSNESGGHQSGTA-------VSAN 159
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T L S R DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 160 TPTLDSLAR-----------DLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIVNNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+++ EP+ E++++IL GLR++YEAHH T EAI+AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIMVDEPTPEESIQILKGLRDRYEAHHRVSITDEAIDAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + F + PP+ E++ + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEMKLEEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + +E + S + E + V +DIA+V S W+GIPV ++
Sbjct: 433 SQEFEKAASLRDTEQRLREQLEETKKSWKEKQGQENSEVTVEDIASVVSSWTGIPVSKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L RVIGQ+EAV AIS+AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETEKLLKLEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|295694806|ref|YP_003588044.1| ATPase AAA-2 domain-containing protein [Kyrpidia tusciae DSM 2912]
gi|295410408|gb|ADG04900.1| ATPase AAA-2 domain protein [Kyrpidia tusciae DSM 2912]
Length = 814
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 270/614 (43%), Positives = 370/614 (60%), Gaps = 59/614 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + + EA LG + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAHEEASRLGHSGIGTEHILLGLVREG--------DGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++S+ S+ + G+ A M ++ K+V E +++ +R G+N++ EHI
Sbjct: 50 LMSLGLSSEKIQREVEKIIGRGPGQGAAMTYTPRAKKVIELSIDEARKLGHNYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV + + L G+ A+ +E N S T
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLPKARQQVIQLLGGDSAETNQE---------NQQSANTP 160
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L S R DLT A + +DPVIGR EI+R+IQ+L RRTKNNP+L+GE
Sbjct: 161 TLDSLAR-----------DLTQMARDGKLDPVIGRNKEIERVIQVLSRRTKNNPVLIGEP 209
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RIV E+P L +KR+M LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 210 GVGKTAIAEGLAQRIVANEIPETLRNKRVMVLDMGTVVAGTKYRGEFEDRLKKIMDEIRQ 269
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R E
Sbjct: 270 AGNVILFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKHIE 324
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+++ +P+ E+A++IL GLR++YEAHH K + EA+ AAV LS RYISDR
Sbjct: 325 KDAALERRFQPIMVDQPTPEEAIQILHGLRDRYEAHHRVKISDEALEAAVRLSDRYISDR 384
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
YLPDKAIDL+DEA SR + + PP+ E + + E + +
Sbjct: 385 YLPDKAIDLIDEAASRVRLRTH-----------TAPPNLKELEEQLEEVRKEKEAAVQSQ 433
Query: 561 YDDVVASMGDTSEIVVES--------SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ A++ D + + E AS D +VV +DIA + S W+GIPV+++
Sbjct: 434 EFEKAAALRDKEQRLREELEKRKQEWQQKQASKD---SVVIEEDIAEIVSSWTGIPVKKL 490
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +EE L KRVIGQDEAV A+SRA++R+R GLKDP RP + +F GPTGVGK
Sbjct: 491 AEEESERLLHMEEILHKRVIGQDEAVEAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGK 550
Query: 673 TELAKSLAACYFGS 686
TELA++LA FG
Sbjct: 551 TELARALAEAMFGD 564
>gi|390456410|ref|ZP_10241938.1| ATPase AAA [Paenibacillus peoriae KCTC 3763]
Length = 814
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 261/612 (42%), Positives = 371/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALIGLGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVETLIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G ++S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLGS---------------SEAVSSH 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 152 HGA---PANVSTPTLDSLARDLTASAKENNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQKIIANEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+++LFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIVLFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+A++IL GLR++YEAHH K T EAI AAV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPSPEEAIQILYGLRDRYEAHHRVKITDEAIEAAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ E R E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLNSY-----------TVPPNLKQLENRLEDIRKEKDSAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDE-----PAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ DT + + E + + E + V P+DIA V ++W+G+PV ++
Sbjct: 433 SQEFEKAAALRDTEQKIREELDVTKNQWKEQQGRTDSEVTPEDIAQVVAIWTGVPVSKLK 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E+ L +RVIGQDEAV A+SRA++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETHRLLNMEQLLHERVIGQDEAVKAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESMFG 564
>gi|90994524|ref|YP_537014.1| Clp protease ATP binding subunit [Pyropia yezoensis]
gi|122194672|sp|Q1XDF4.1|CLPC_PORYE RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA
homolog
gi|90819088|dbj|BAE92457.1| Clp protease ATP binding subunit [Pyropia yezoensis]
Length = 821
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 267/613 (43%), Positives = 376/613 (61%), Gaps = 51/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGL+ E +GI +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEG--------TGIAAQVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 NVNLKDA--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
+GL +G A RVL+ L VDV+ + A + L GE A E ++SG
Sbjct: 110 MGLVREGEGVAARVLENLAVDVSSIRAEVIQML-GENA-------------EANVSGSNT 155
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ R++ LE+F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+GE
Sbjct: 156 ---TQARSKTPTLEEFGSNLTQMAMEGGLDPVVGRQKEIERVIQILGRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP L K +++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 213 GVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMDEIKS 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ +VIL IDEVHTLIG+G +D +NLLKP+L RGELQCI +TT +E+R E
Sbjct: 273 ADNVILVIDEVHTLIGAGAA-----EGAIDAANLLKPALARGELQCIGATTLEEYRKHIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV++ EPS E+ + IL GLR++YE HH + A+ AA + +YISDR
Sbjct: 328 KDPALERRFQPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRL 559
+LPDKAIDL+DEAGSR + L + +E+R V + E ++
Sbjct: 388 FLPDKAIDLIDEAGSRVRL---------LNSQLPPAARELDKELRAVLKTKDEAIRAQ-- 436
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVASLWSGIPVQQIT 613
KY+ EI + + + S +EP VV DDIA + + W+GIPV ++T
Sbjct: 437 KYETAEQYRAREMEIKAQIAAIAQSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKT
Sbjct: 497 KSESEKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKT 556
Query: 674 ELAKSLAACYFGS 686
EL K+LA+ +FGS
Sbjct: 557 ELTKALASYFFGS 569
>gi|428776416|ref|YP_007168203.1| ATPase [Halothece sp. PCC 7418]
gi|428690695|gb|AFZ43989.1| ATPase AAA-2 domain protein [Halothece sp. PCC 7418]
Length = 798
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 265/614 (43%), Positives = 377/614 (61%), Gaps = 81/614 (13%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FE FT++A+KAV+ +Q EA+ + +++V ++ +LLGLIAE N + G+ + AR
Sbjct: 1 MFEYFTDKAIKAVVLAQEEARRMKQNLVGSEQVLLGLIAEGSSDAANILSQLGVKLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + S ++ + A +PF+ KR+FE A+E +R + + I PEH
Sbjct: 61 QVVEGLVGSGSD-------------NVPANIPFTPRAKRIFEQALEIARQQSHQSILPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL---AKEGREPSL----AKGVR 251
I L + T ++G A +VL +LG D +AA RL+ L + EPS + G R
Sbjct: 108 ILLAM-TQEEGVATKVLSQLGADPQQVAA----RLEEALNNPSSGDEEPSAPATASMGER 162
Query: 252 ENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTK 311
G + G + L+ F ++LT +A E IDP+IGR+ E++R IQIL RRTK
Sbjct: 163 RQGRFGFNPQQQQQG---DNGLKSFAINLTEKAQNEEIDPIIGRDQEVERTIQILGRRTK 219
Query: 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV 371
NNP+L+GE GVGKTAIAEGLA RIV+ +VP L K++ SLDMGLL+AG + RGE E R+
Sbjct: 220 NNPVLVGEPGVGKTAIAEGLAQRIVRQDVPEALQDKQVYSLDMGLLVAGTRFRGEFEERL 279
Query: 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431
++ E+Q++G++IL IDE+HTLIG G + G+D +NLLKP+L RGELQC+ +TT
Sbjct: 280 KNIVKEVQEAGNIILVIDEIHTLIGGGAM-----EGGMDAANLLKPALARGELQCVGTTT 334
Query: 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491
DE+R E+D AL RRFQPV++ EPS E + IL G+R YE +H K +LEA+ AA
Sbjct: 335 MDEYRQYIEQDAALERRFQPVMVDEPSVEQTIDILEGIRSPYEEYHKVKISLEALEAAAK 394
Query: 492 LSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH 551
LS RYISDR+LPDKAID++DEAGSR H+ Q+M
Sbjct: 395 LSDRYISDRHLPDKAIDIIDEAGSRLHLS---------------------------QSMA 427
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
E ++ G+ E E+ P+ E VVG D++A++ S W+G+PV +
Sbjct: 428 E------------KSAEGEAEENTTET--PA-----EIPVVGLDEVASIVSSWTGVPVNK 468
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E LL+ LE+ L +R+IGQ EAV+A+SRA++R+RVG+KD +RP A+ +F GPTGVG
Sbjct: 469 MTQAESELLLHLEDTLHERIIGQSEAVSAVSRAIRRARVGMKDVDRPIASFIFSGPTGVG 528
Query: 672 KTELAKSLAACYFG 685
KTEL K+LA FG
Sbjct: 529 KTELTKALAQYMFG 542
>gi|334117325|ref|ZP_08491417.1| ATPase AAA-2 domain protein [Microcoleus vaginatus FGP-2]
gi|333462145|gb|EGK90750.1| ATPase AAA-2 domain protein [Microcoleus vaginatus FGP-2]
Length = 822
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 263/615 (42%), Positives = 384/615 (62%), Gaps = 61/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFTE+A+KA++ +Q EA+ LG + V T+ +LLGL+ E L+ G+ + +AR
Sbjct: 1 MFERFTEQAIKAIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAKVLLDMGLNLKEAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ +I +G F ++PF+ KR+FE A+ +R G+N+I EH
Sbjct: 61 NEIENII------------GRGSGFLPP-EIPFTPRVKRIFETALNEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL D+G A +VL+ LG+D + V R GE+A G R G+
Sbjct: 108 ILLGLIQDDEGVAAKVLQNLGIDRQRVRT-QVIRAVGEVAA-------VPGGR-----GE 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ K+P LE+F +LT A+ +DPV+GRE EI+R+IQ+L RRTKNNP+L+G
Sbjct: 155 SGDRKTP------TLEEFGTNLTKLAAAGKLDPVVGRENEIERVIQVLGRRTKNNPVLVG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA RIV VP L K+++SLDMG L+AG K RGE E R+T +++EI
Sbjct: 209 EPGVGKTALAEGLAQRIVNRNVPEILEDKQVISLDMGSLIAGTKFRGEFEERLTKIMAEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G++IL IDE+HTL+G+G + +G+ +D SN+LKP+L RGELQC+ +TT +E+R
Sbjct: 269 RAAGNIILVIDEIHTLVGAGAI----QGS-MDASNMLKPALARGELQCVGATTLEEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+ + EPS + + IL GLR YE HH + A+ AA LS RYI+
Sbjct: 324 IERDAALERRFQPIKVGEPSVAETIEILYGLRSAYEQHHRLTISDAALEAAATLSDRYIN 383
Query: 499 DRYLPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH 551
DR+LPDKAIDL+DEAGSR + E+ + KK Q ++K D +E
Sbjct: 384 DRFLPDKAIDLIDEAGSRVRVMNSQTPPEVKELKK--QLPAVTKEKDAAVRE-------Q 434
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + +L+ ++ + +S L ++ +V +DIA + + W+G+PV +
Sbjct: 435 DFDKAGKLRDRELEIEAEIAEATINKSQLKTSP------IVTEEDIAHIVANWTGVPVSK 488
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E LL+ +E+ L +R+IGQ+EAV+A+SRA++R+RVGLK+PNRP A+ +F GPTGVG
Sbjct: 489 LTESESELLLHMEDTLHQRLIGQEEAVSAVSRAIRRARVGLKNPNRPIASFIFSGPTGVG 548
Query: 672 KTELAKSLAACYFGS 686
KTEL K+LA +FGS
Sbjct: 549 KTELTKALATYFFGS 563
>gi|2921158|gb|AAC04687.1| ClpC [Arabidopsis thaliana]
Length = 928
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 285/668 (42%), Positives = 401/668 (60%), Gaps = 67/668 (10%)
Query: 36 PMSSFFNI------SMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERA 89
PM F + + Q FHS N +R + ++FERFTE+A
Sbjct: 47 PMQGFMGLRGNNALDTLGKSRQDFHSKVRQAMNVPKGKASR-----FTVKAMFERFTEKA 101
Query: 90 VKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHS 147
+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + AR V I
Sbjct: 102 IKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII-- 159
Query: 148 TNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVD 207
+G F A ++PF+ KRV E ++E +R G+N+I EH+ LGL
Sbjct: 160 ----------GRGSGFV-AVEIPFTPRAKRVLELSLEATRQLGHNYIGSEHLLLGLLREG 208
Query: 208 DGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGR 267
+G A RVL+ LG D +++ V R+ GE V N + G +++ K P
Sbjct: 209 EGVAARVLENLGADPSNIRT-QVIRMVGE----------NNEVTAN-VGGGSSSNKMP-- 254
Query: 268 TRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAI 327
LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+GE GVGKTAI
Sbjct: 255 ----TLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAI 310
Query: 328 AEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILF 387
AEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ EI++S ++ILF
Sbjct: 311 AEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILF 370
Query: 388 IDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALAR 447
IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R EKD AL R
Sbjct: 371 IDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALER 425
Query: 448 RFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAI 507
RFQPV + EP+ ++ ++IL GLRE+YE HH ++T E++ AA LS +YISDR+LPDKAI
Sbjct: 426 RFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDKAI 485
Query: 508 DLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRLKY----- 561
DL+DEAGSR + + +E + + +E+R + + +E V+G +
Sbjct: 486 DLIDEAGSRVRLRHAQVPEEVR---------ELEKELRQITKEKNEAVRGQDFEKAGTLR 536
Query: 562 DDVVASMGDTSEIVV---ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
D + + S I E S + +E +V DI + S W+GIPV++++ DE
Sbjct: 537 DREIELRAEVSAIQAKGKEMSKAESETGEEGPMVTESDIQHIVSSWTGIPVEKVSTDESD 596
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ +EE L KR+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+
Sbjct: 597 RLLKMEETLHKRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKA 656
Query: 679 LAACYFGS 686
LAA YFGS
Sbjct: 657 LAAYYFGS 664
>gi|18423214|ref|NP_568746.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Arabidopsis
thaliana]
gi|75170759|sp|Q9FI56.1|CLPC1_ARATH RecName: Full=Chaperone protein ClpC1, chloroplastic; AltName:
Full=ATP-dependent Clp protease ATP-binding subunit ClpC
homolog 1; AltName: Full=Casein lytic proteinase C1;
AltName: Full=Protein DE-REGULATED CAO ACCUMULATION 1;
AltName: Full=Protein IRON-RESCUED MUTANT 1; Flags:
Precursor
gi|9758239|dbj|BAB08738.1| ATP-dependent Clp protease, ATP-binding subunit [Arabidopsis
thaliana]
gi|20856956|gb|AAM26692.1| AT5g50920/K3K7_7 [Arabidopsis thaliana]
gi|110742601|dbj|BAE99213.1| ATP-dependent Clp protease [Arabidopsis thaliana]
gi|332008628|gb|AED96011.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Arabidopsis
thaliana]
Length = 929
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 282/647 (43%), Positives = 396/647 (61%), Gaps = 61/647 (9%)
Query: 51 QFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFT 110
Q FHS N +R + ++FERFTE+A+K ++ +Q EA+ LG + V T
Sbjct: 69 QDFHSKVRQAMNVPKGKASR-----FTVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 123
Query: 111 QHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAK 168
+ +LLGLI E L+S GI + AR V I +G F A +
Sbjct: 124 EQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII------------GRGSGFV-AVE 170
Query: 169 MPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAV 228
+PF+ KRV E ++E +R G+N+I EH+ LGL +G A RVL+ LG D +++
Sbjct: 171 IPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR-T 229
Query: 229 AVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEEL 288
V R+ GE V N + G +++ K P LE++ +LT A E
Sbjct: 230 QVIRMVGE----------NNEVTAN-VGGGSSSNKMP------TLEEYGTNLTKLAEEGK 272
Query: 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348
+DPV+GR+ +I+R++QIL RRTKNNP L+GE GVGKTAIAEGLA RI +VP + K+
Sbjct: 273 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKK 332
Query: 349 IMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTG 408
+++LDMGLL+AG K RGE E R+ L+ EI++S ++ILFIDEVHTLIG+G
Sbjct: 333 VITLDMGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAA-----EGA 387
Query: 409 LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468
+D +N+LKP+L RGELQCI +TT DE+R EKD AL RRFQPV + EP+ ++ ++IL G
Sbjct: 388 IDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKG 447
Query: 469 LREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQ 528
LRE+YE HH ++T E++ AA LS +YISDR+LPDKAIDL+DEAGSR + + +E
Sbjct: 448 LRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEA 507
Query: 529 QTCILSKPPDDYWQEIRTV-QAMHEVVQGSRLKY-----DDVVASMGDTSEIVV---ESS 579
+ + +E+R + + +E V+G + D + + S I E S
Sbjct: 508 R---------ELEKELRQITKEKNEAVRGQDFEKAGTLRDREIELRAEVSAIQAKGKEMS 558
Query: 580 LPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVA 639
+ +E +V DI + S W+GIPV++++ DE L+ +EE L KR+IGQDEAV
Sbjct: 559 KAESETGEEGPMVTESDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRIIGQDEAVK 618
Query: 640 AISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+LAA YFGS
Sbjct: 619 AISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS 665
>gi|434403529|ref|YP_007146414.1| ATPase with chaperone activity, ATP-binding subunit
[Cylindrospermum stagnale PCC 7417]
gi|428257784|gb|AFZ23734.1| ATPase with chaperone activity, ATP-binding subunit
[Cylindrospermum stagnale PCC 7417]
Length = 817
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 265/617 (42%), Positives = 377/617 (61%), Gaps = 67/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT A++ ++ +Q EA+ LG + V T+ +LLGL+ E E G+T+ AR
Sbjct: 1 MFEHFTSEAIRVIMLAQEEARRLGHNFVGTEQILLGLMGEGTGVAAKVLTELGVTLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F ++PF+ K +FE + + S G+N+I EH
Sbjct: 61 REVEKII------------GRGSGFVPP-EIPFTPKVKSLFEQSFREAHSLGHNYINTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL+ LGVD+ + + RL G + S+ G
Sbjct: 108 LLLGLTEAGEGVAAKVLQNLGVDLKAVRTAVMRRL-------GDDASVFVGG-------- 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S R + +E+F +LT A E +DPV+GR EI+R IQIL RRTKNNP+L+G
Sbjct: 153 ----NSQKRNQKLTIEEFGRNLTKLAQEGKLDPVVGRGKEIERTIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEG+A RIV + P LL+K+++SLDMG L++G + RG+ E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGIAQRIVNQDAPEILLNKQVISLDMGSLVSGTRFRGDFEERLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ G++IL IDEVHTL+G+G G +G GLD +N+LKP+L RGELQCI +TT E+R
Sbjct: 269 RSVGNIILVIDEVHTLVGAG----GTEG-GLDAANILKPALARGELQCIGATTLKEYRQH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+L+ EPS E+ V+IL GLR YE HH + AI AA LS RYIS
Sbjct: 324 IERDAALERRFQPILVGEPSIEETVQILYGLRSAYEQHHKVHISDAAILAAAELSERYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR H+ R T +E++ E++ ++
Sbjct: 384 DRFLPDKAIDLIDEAGSRVHL----RNSRSSTN----------KELK-----RELISVTK 424
Query: 559 LKYDDV-VASMGDT-----SEIVVESSLPSASDDDEPA---VVGPDDIAAVASLWSGIPV 609
K D + V G E+ +++ L + S+ D+ +VG +DIA + + W+G+PV
Sbjct: 425 SKEDAIRVQDFGKAVKLRGQELELQTQLHAESETDKTVTIPIVGEEDIAQIVASWTGVPV 484
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E LL+ LE+ L +R+IGQ++AV ++SRA++R+RVGLK+PNRP A+ +F GPTG
Sbjct: 485 NKLTESESELLLHLEDTLHQRLIGQEQAVTSVSRAIRRARVGLKNPNRPIASFIFSGPTG 544
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELAK+LAA +FGS
Sbjct: 545 VGKTELAKALAAYFFGS 561
>gi|357152345|ref|XP_003576089.1| PREDICTED: chaperone protein ClpC2, chloroplastic-like
[Brachypodium distachyon]
Length = 943
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 264/619 (42%), Positives = 389/619 (62%), Gaps = 38/619 (6%)
Query: 72 RRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESG 131
RR+ + ++FE FTE+A+K +I +Q E + LG + V ++ +LLGLI E +G
Sbjct: 91 RRRFVTTRAMFESFTEKAIKVIILAQEETRRLGHNTVGSEQILLGLIGEG--------TG 142
Query: 132 ITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGY 191
I + A +++ + + + A +G ++PF+ S K+V E + E SR G+
Sbjct: 143 IAARALKSAGLNLKDA--RVEVEKALGRGTGLIPV-EIPFTASAKKVIEFSAEESRQLGH 199
Query: 192 NFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVR 251
N+I EH+ LGL DDG+A +LK+ D N++ V R+ E++ EG+
Sbjct: 200 NYIGSEHLLLGLVREDDGAALIILKKFQADPNNIRN-EVMRMISEIS-EGQTVG------ 251
Query: 252 ENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTK 311
+ G + K P LE++ +LT A E +DPV+GR+ +I+R++QIL RRTK
Sbjct: 252 -TGVGGGSTGSKMP------TLEEYGTNLTKLAEEGKLDPVVGRQKQIERVLQILGRRTK 304
Query: 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV 371
NNP L+GE GVGKTA+AEGLA RIV +VP + K +++LDMGLL+AG K RGE E R+
Sbjct: 305 NNPCLIGEPGVGKTAVAEGLAQRIVTGDVPETVEGKTVITLDMGLLVAGTKYRGEFEERL 364
Query: 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431
L+ EI+++G++ILF+DEVHTL+G+G +D +N+LKP+L RGELQCI +TT
Sbjct: 365 KKLMDEIKQNGEIILFLDEVHTLVGAGAA-----EGAIDAANILKPALARGELQCIGATT 419
Query: 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491
DE+R EKD AL RRFQPV + EP ++A+ IL GL+E+YE HH ++T EA+ AA
Sbjct: 420 IDEYRKHIEKDPALERRFQPVKVPEPMVDEAIGILKGLQERYEIHHKLRYTDEALVAAAL 479
Query: 492 LSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH 551
LS +YISDR+LPDKAIDL+DEAGS + L K ++ +L K + ++
Sbjct: 480 LSHQYISDRFLPDKAIDLMDEAGSL--VRLRHAKLPEEAKVLDKKLKEVIKQKDDAIRCQ 537
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGI 607
+ L+ ++V TS +V ++ + ++ + A+ GP DI + S W+ +
Sbjct: 538 QFEMAGELRSEEVELKSQITS-LVAKNKEMNKAEVESGALAGPVVTEADIQQIVSTWTSV 596
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV++++ DE L+ +EE L +RVIGQDEAV AISRA++R+RVGL+DP+RP A+ +F GP
Sbjct: 597 PVEKVSVDESDRLLRMEETLHRRVIGQDEAVKAISRAIRRARVGLRDPSRPIASFIFAGP 656
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGK+ELAKSLA CY+GS
Sbjct: 657 TGVGKSELAKSLATCYYGS 675
>gi|186683718|ref|YP_001866914.1| ATPase [Nostoc punctiforme PCC 73102]
gi|186466170|gb|ACC81971.1| ATPase AAA-2 domain protein [Nostoc punctiforme PCC 73102]
Length = 817
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 266/611 (43%), Positives = 377/611 (61%), Gaps = 54/611 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT A++ ++ +Q EA+ LG + V T+ +LLGL+ E E G+T+ AR
Sbjct: 1 MFEHFTSEAIRVIMLAQEEARRLGHNFVGTEQILLGLMGEGTGVAAKVLAELGVTLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F ++PF+ K +FE + + + S G N+I EH
Sbjct: 61 REVEKII------------GRGSGFVPP-EIPFTPKVKSLFEQSFKEAHSLGQNYINTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL+ LGVD + + V RL GE A P+ A SG
Sbjct: 108 LLLGLTEAGEGVAAKVLQNLGVDFKSVRSAIVRRL-GENA-----PAFAG-------SG- 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S RT+ +E++ +LT A E +DPV+GRE EI+R IQIL RRTKNNP+L+G
Sbjct: 154 -----SQKRTQPLTMEEYGRNLTKLAQEGRLDPVVGREKEIERAIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ +VP L K+++SLDMG L+AG + RG+ E R+ ++ E+
Sbjct: 209 EPGVGKTAIAEGLAQRIINQDVPETLQDKQVISLDMGSLVAGTRFRGDFEERIKKVVEEV 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ G++IL IDE+HTL+G+G G +G GLD +N+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RTVGNIILVIDEIHTLVGAG----GTEG-GLDAANILKPALARGELQCIGATTLDEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+++ EPS E+ V+IL GLR YE HH A+ AA LS RYIS
Sbjct: 324 IERDAALERRFQPIMVGEPSVEETVQILYGLRGAYEQHHKVTILDSALVAAAELSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R + Q S P + +E+ V E R
Sbjct: 384 DRFLPDKAIDLIDEAGSRV------RLRNSQ----SSPNKELKRELAGVTKEKEA--AVR 431
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEP---AVVGPDDIAAVASLWSGIPVQQITAD 615
++ D ++ D + E + + +++P VV +DIA + + W+G+PV ++T
Sbjct: 432 VQDFDKAVTLRDQELKLAEQLQATFTPNEQPVNSTVVDEEDIAQIVASWTGVPVNKLTES 491
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E LL+ LE+ L +R+IGQ++AV+A+SR ++R+RVGLK+PNRP A+ +F GPTGVGKTEL
Sbjct: 492 ESELLLHLEDTLHQRLIGQEQAVSAVSRGIRRARVGLKNPNRPIASFIFSGPTGVGKTEL 551
Query: 676 AKSLAACYFGS 686
AK+LA+ +FG+
Sbjct: 552 AKALASYFFGA 562
>gi|415886308|ref|ZP_11548131.1| Class III stress response-related ATPase, ClpC [Bacillus
methanolicus MGA3]
gi|387588961|gb|EIJ81282.1| Class III stress response-related ATPase, ClpC [Bacillus
methanolicus MGA3]
Length = 814
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 274/610 (44%), Positives = 376/610 (61%), Gaps = 52/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI KA A
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLVREG--------EGIAA-KALNA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + ++ ++ GK A + ++ K+V E +++ +R G++++ EHI
Sbjct: 53 L-GLGSEKIQKEVENLIGTGKEV--AQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G G + A +S T
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGSNESGGHQSGTA-------VSANTP 161
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L S R DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 162 TLDSLAR-----------DLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIVNNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+++ EP+ E++++IL GLR++YEAHH T EAI+AAV LS RYISDR
Sbjct: 326 KDAALERRFQPIMVDEPTPEESIQILKGLRDRYEAHHRVSITDEAIDAAVKLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGS+ + + + PP+ E++ + E + +
Sbjct: 386 FLPDKAIDLIDEAGSKVRLRSY-----------TTPPNLKELEMKLEEVRKEKDAAVQSQ 434
Query: 561 YDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ DT + + +E + S + E + V +DIA+V S W+GIPV ++
Sbjct: 435 EFEKAASLRDTEQRLREQLEETKKSWKEKQGQENSEVTVEDIASVVSSWTGIPVSKLAET 494
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LEE L RVIGQ+EAV AIS+AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 495 ETEKLLKLEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 554
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 555 ARALAEAMFG 564
>gi|11465798|ref|NP_053942.1| Clp protease ATP binding subunit [Porphyra purpurea]
gi|1705925|sp|P51332.1|CLPC_PORPU RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA
homolog
gi|1276798|gb|AAC08218.1| Clp protease ATP binding subunit (chloroplast) [Porphyra purpurea]
Length = 821
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 267/613 (43%), Positives = 376/613 (61%), Gaps = 51/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGL+ E +GI +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEG--------TGIAAQVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 NVNLKDA--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
+GL +G A RVL+ L VDV+ + A + L GE A E ++SG A
Sbjct: 110 MGLVREGEGVAARVLENLAVDVSSIRAEVIQML-GENA-------------EANVSGSNA 155
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ R++ LE+F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+GE
Sbjct: 156 ---TQARSKTPTLEEFGSNLTQMAIEGGLDPVVGRQKEIERVIQILGRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP L K +++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 213 GVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMDEIKS 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ +VIL IDEVHTLIG+G +D +NLLKP+L RGELQCI +TT +E+R E
Sbjct: 273 ADNVILVIDEVHTLIGAGAA-----EGAIDAANLLKPALARGELQCIGATTLEEYRKHIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRF PV++ EPS E+ + IL GLR++YE HH + A+ AA + +YISDR
Sbjct: 328 KDPALERRFHPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRL 559
+LPDKAIDL+DEAGSR + L + +E+R V + E ++
Sbjct: 388 FLPDKAIDLIDEAGSRVRL---------LNSQLPPAARELDKELRAVLKTKDEAIRAQ-- 436
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVASLWSGIPVQQIT 613
KY+ EI + + + S +EP VV DDIA + + W+GIPV ++T
Sbjct: 437 KYETAEQYRAREMEIKAQIAAIAQSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKT
Sbjct: 497 KSESEKLMQMEETLHGRIIGQDEAVIAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKT 556
Query: 674 ELAKSLAACYFGS 686
EL K+LA+ +FGS
Sbjct: 557 ELTKALASYFFGS 569
>gi|310644235|ref|YP_003948994.1| ATPase AAA [Paenibacillus polymyxa SC2]
gi|309249186|gb|ADO58753.1| ATPase AAA-2 domain-containing protein [Paenibacillus polymyxa SC2]
gi|392304928|emb|CCI71291.1| ATP-dependent Clp protease ATP-binding subunit clpC [Paenibacillus
polymyxa M1]
Length = 814
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 260/612 (42%), Positives = 371/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALIGLGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVETLIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G ++S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLGS---------------SEAVSSH 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 152 HGA---PANVSTPTLDSLARDLTASAKENNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQKIIANEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+++LFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIVLFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+A++IL GLR++YEAHH K T EAI AAV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPSPEEAIQILYGLRDRYEAHHRVKITDEAIEAAVRLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ E R E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLNSY-----------TVPPNLKQLENRLEDIRKEKDSAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDE-----PAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ DT + + E + + E + V P+DIA V ++W+G+PV ++
Sbjct: 433 SQEFEKAAALRDTEQKIREELDVTKNQWKEQQGRTDSEVTPEDIAQVVAIWTGVPVSKLK 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E+ L +RVIGQ+EAV A+SRA++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETHRLLNMEQLLHERVIGQEEAVKAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESMFG 564
>gi|119511432|ref|ZP_01630543.1| UvrB/UvrC protein [Nodularia spumigena CCY9414]
gi|119463897|gb|EAW44823.1| UvrB/UvrC protein [Nodularia spumigena CCY9414]
Length = 817
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 262/611 (42%), Positives = 379/611 (62%), Gaps = 54/611 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT A+K ++ +Q EA+ LG + V T+ +LLGLI E E G+T+ +AR
Sbjct: 1 MFEHFTSEAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLAELGVTLKEAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F ++PF+ K +FE + + S G+N+I EH
Sbjct: 61 REVEKII------------GRGSGFVPP-EIPFTPKVKSLFEQSFREANSLGHNYINTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL+ LGVD+ ++ + RL EG ++
Sbjct: 108 LLLGLTEAGEGVAAKVLQNLGVDLKNVRTNVIRRL-----GEG-----------GTVFAS 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T + S R+++ LE+F +LT A E +DPV+GR EI+R IQIL RRTKNNP+L+G
Sbjct: 152 TGS--SSKRSQSVTLEEFGRNLTKLAQEGKLDPVVGRAKEIERTIQILGRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV + P LL K+++SLDMG++++G + RG+ E R+ ++ E+
Sbjct: 210 EPGVGKTAIAEGLAQRIVNQDAPEILLDKQVISLDMGMVVSGTRFRGDFEERLKKIVEEV 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G++IL IDEVHTL+G+G G +G GLD +N+LKP+L RGELQCI +TT +E+R
Sbjct: 270 RSAGNIILVIDEVHTLVGAG----GTEG-GLDAANILKPALARGELQCIGATTLNEYRQH 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQ +LI EPS E+ V IL GLR YE HH + +A+ AA LS RYIS
Sbjct: 325 IERDAALERRFQSILIGEPSVEETVEILYGLRGAYEQHHKVHISDQAVLAAAELSDRYIS 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR + + +S + Q + +A E V R
Sbjct: 385 DRFLPDKAIDLIDEAGSRVRL---------RNSRISTNKELKKQLVGVSKAKQEAV---R 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDE---PAVVGPDDIAAVASLWSGIPVQQITAD 615
++ + D E+ +E+ L + + +++ +V +DIA + + W+G+PV ++T
Sbjct: 433 VQNFGKAGELRD-EEMKLEADLQAEAQNEDFVKSPIVDEEDIAQIVASWTGVPVNKLTES 491
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E LL+ LE+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTEL
Sbjct: 492 ESELLLHLEDTLHERLIGQEQAVTAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTEL 551
Query: 676 AKSLAACYFGS 686
AKSLA+ +F S
Sbjct: 552 AKSLASYFFSS 562
>gi|375310836|ref|ZP_09776101.1| ATPase aaa-2 domain-containing protein [Paenibacillus sp. Aloe-11]
gi|375077204|gb|EHS55447.1| ATPase aaa-2 domain-containing protein [Paenibacillus sp. Aloe-11]
Length = 814
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 260/612 (42%), Positives = 371/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALIGLGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVETLIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G ++S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLGS---------------SEAVSSH 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 152 HGA---PANVSTPTLDSLARDLTASAKENNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQKIIANEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+++LFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIVLFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+A++IL GLR++YEAHH K T EAI AAV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPSPEEAIQILYGLRDRYEAHHRVKITDEAIEAAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ E R E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLNSY-----------TVPPNLKQLENRLEDIRKEKDSAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDE-----PAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ DT + + E + + E + V P+DIA V ++W+G+PV ++
Sbjct: 433 SQEFEKAAALRDTEQKIREELDVTKNQWKEQQGRTDSEVTPEDIAQVVAIWTGVPVSKLK 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E+ L +RVIGQ+EAV A+SRA++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETHRLLNMEQLLHERVIGQEEAVKAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESMFG 564
>gi|289522311|ref|ZP_06439165.1| negative regulator of genetic competence ClpC/MecB [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289504147|gb|EFD25311.1| negative regulator of genetic competence ClpC/MecB [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 832
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 267/616 (43%), Positives = 374/616 (60%), Gaps = 55/616 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+++ FTERA + V + REA LG D++ T+H+LLGL+AE + + GI +D+ R
Sbjct: 1 MWQFFTERARRVVQLAHREALRLGHDVIGTEHILLGLLAEGDGVAAHVLMSLGIDLDEVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V Q A+ KP +P S KRV + A+ +R+ G N++ EH
Sbjct: 61 KRV--------EQLVGKGQAKDKPID----LPLSPRAKRVLDLAMREARNMGVNYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG-ELAKEGREPSLAKGVRENSISG 257
I LGL +G A +VL +G+D+ + V L G E+ + G+ L++
Sbjct: 109 ILLGLLAEGEGIAAQVLTSMGLDMQKVYQEVVRYLSGGEVDQMGQSQGLSR--------- 159
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K + K+P L+Q +DL A + +DPVIGRE EIQR+IQIL RRTKNNP L+
Sbjct: 160 KKSHTKTP------TLDQLGIDLVEMARQGELDPVIGREREIQRVIQILSRRTKNNPCLI 213
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
G+ GVGKTAI EGLA RI EVP L +KRI+ L++G L+AG K RGE E R+ L+ E
Sbjct: 214 GDPGVGKTAIVEGLAQRIATGEVPEVLKNKRIVQLNIGNLVAGTKYRGEFEERMRKLVKE 273
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++ S DVI+FIDE+HTL+G+G G +G +D +N+LKPSL +GE Q I +TT DE+R
Sbjct: 274 VRDSKDVIVFIDEIHTLVGAG----GAEGA-VDAANILKPSLAKGEFQVIGATTLDEYRK 328
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EP+ ED + IL GLR+KYEAHH K T +A+ AA LSARYI
Sbjct: 329 YIEKDSALERRFQPVFVGEPNIEDTIEILKGLRDKYEAHHRVKITDKALEAAARLSARYI 388
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD---DYWQEIRTVQAMHEVV 554
SDRYLPDKAIDL+DEAG+R + PP+ + +++ TV+ E
Sbjct: 389 SDRYLPDKAIDLIDEAGARVRLSTM------------NPPEFIKELEKKLETVRKEKEAA 436
Query: 555 QGSRLKYDDVVASMGD----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
S+ +++ A + + E+ + A E +V +DIA V S W+GIPV
Sbjct: 437 VASQ-EFEKAAALRDEERKLSEELEEKRKEWQAKKSQEEPIVDEEDIALVVSEWTGIPVT 495
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
Q+T +E L+ +EE++ KR+I Q+EAV+ +++A++R+R GLKDP RP + LF GPTGV
Sbjct: 496 QMTEEESQRLLRMEEEIHKRIIDQEEAVSIVAKAIRRARSGLKDPQRPIGSFLFLGPTGV 555
Query: 671 GKTELAKSLAACYFGS 686
GKTEL+K+LA FG
Sbjct: 556 GKTELSKALAEFMFGD 571
>gi|297795893|ref|XP_002865831.1| heat shock protein 93-V [Arabidopsis lyrata subsp. lyrata]
gi|297311666|gb|EFH42090.1| heat shock protein 93-V [Arabidopsis lyrata subsp. lyrata]
Length = 929
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 281/647 (43%), Positives = 396/647 (61%), Gaps = 61/647 (9%)
Query: 51 QFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFT 110
Q FHS N +R + ++FERFTE+A+K ++ +Q EA+ LG + V T
Sbjct: 69 QDFHSKVRQAMNVPKGKASR-----FTVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 123
Query: 111 QHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAK 168
+ +LLGLI E L+S GI + AR V I +G F A +
Sbjct: 124 EQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII------------GRGSGFV-AVE 170
Query: 169 MPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAV 228
+PF+ KRV E ++E +R G+N+I EH+ LGL +G A RVL+ LG D +++
Sbjct: 171 IPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR-T 229
Query: 229 AVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEEL 288
V R+ GE V N + G +++ K P LE++ +LT A E
Sbjct: 230 QVIRMVGE----------NNEVTAN-VGGGSSSNKMP------TLEEYGTNLTKLAEEGK 272
Query: 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348
+DPV+GR+ +I+R++QIL RRTKNNP L+GE GVGKTAIAEGLA RI +VP + K+
Sbjct: 273 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKK 332
Query: 349 IMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTG 408
+++LDMGLL+AG K RGE E R+ L+ EI++S ++ILFIDEVHTLIG+G
Sbjct: 333 VITLDMGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAA-----EGA 387
Query: 409 LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468
+D +N+LKP+L RGELQCI +TT DE+R EKD AL RRFQPV + EP+ ++ ++IL G
Sbjct: 388 IDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKG 447
Query: 469 LREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQ 528
LRE+YE HH ++T +++ AA LS +YISDR+LPDKAIDL+DEAGSR + + +E
Sbjct: 448 LRERYEIHHKLRYTDDSLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEA 507
Query: 529 QTCILSKPPDDYWQEIRTV-QAMHEVVQGSRLKY-----DDVVASMGDTSEIVV---ESS 579
+ + +E+R + + +E V+G + D + + S I E S
Sbjct: 508 R---------ELEKELRQITKEKNEAVRGQDFEKAGTLRDREIELRAEVSAIQAKGKEMS 558
Query: 580 LPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVA 639
+ +E +V DI + S W+GIPV++++ DE L+ +EE L KR+IGQDEAV
Sbjct: 559 KAESETGEEGPMVTESDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRIIGQDEAVK 618
Query: 640 AISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+LAA YFGS
Sbjct: 619 AISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS 665
>gi|261409551|ref|YP_003245792.1| ATPase AAA-2 domain-containing protein [Paenibacillus sp. Y412MC10]
gi|261286014|gb|ACX67985.1| ATPase AAA-2 domain protein [Paenibacillus sp. Y412MC10]
Length = 818
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 265/612 (43%), Positives = 366/612 (59%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGDGIAAKALIGLGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVETLIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLG------------------SSEAV 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 149 SSHHGTPQNVSTPTLDSLARDLTAIAKEGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIINNEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+A++IL GLR++YEAHH K T EAI AV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPSPEEAIQILYGLRDRYEAHHRVKITDEAIEQAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ QE E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLHTY-----------TIPPNLKDQEAHLEDIRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDT-----SEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ DT E+ V + + V P+DIA V + W+GIPV ++
Sbjct: 433 SQEFEKAAALRDTEQKLREELEVTKNQWKEKQGRTDSEVTPEDIADVVANWTGIPVNKLK 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ LEE L RVIGQ+EAV A+SRAV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETERLLNLEEILHSRVIGQEEAVKAVSRAVRRARAGLKDPKRPMGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|224136316|ref|XP_002322299.1| predicted protein [Populus trichocarpa]
gi|222869295|gb|EEF06426.1| predicted protein [Populus trichocarpa]
Length = 932
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 282/634 (44%), Positives = 399/634 (62%), Gaps = 61/634 (9%)
Query: 70 RKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFL 128
+K ++ +P ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L
Sbjct: 82 QKAKRFVP-RAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVL 140
Query: 129 ES-GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSR 187
+S GI + AR V I +G F A ++PF+ KRV E ++E +R
Sbjct: 141 KSMGINLKDARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEAR 187
Query: 188 SRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLA 247
G+N+I EH+ LGL +G A RVL+ LG D +++ A S EL +P+
Sbjct: 188 QLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQA-SNASFELC----QPNF- 241
Query: 248 KGVRENSISGKTAALKSPGRT--RASALEQFCVDLTARASEELIDPVIGRETEIQRIIQI 305
+ EN ++G T PG + + LE++ +LT A E +DPV+GR+ +I+R+IQI
Sbjct: 242 --LTEN-LAGSTVG---PGSSNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVIQI 295
Query: 306 LCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG 365
L RRTKNNP L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RG
Sbjct: 296 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRG 355
Query: 366 ELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQ 425
E E R+ L+ EI++S +++LFIDEVHTLIG+G +D +N+LKP+L RGELQ
Sbjct: 356 EFEERLKKLMEEIKQSDEIMLFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQ 410
Query: 426 CIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA 485
CI +TT DE+R EKD AL RRFQPV + EPS ++ ++IL GLRE+YE HH ++T E+
Sbjct: 411 CIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDES 470
Query: 486 INAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR 545
+ AA LS +YISDR+LPDKAIDL+DEAGSR + + +E + + +E+R
Sbjct: 471 LVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEAR---------ELEKEVR 521
Query: 546 TV-QAMHEVVQGS--------RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP-- 594
+ + E V+G R + D+ A + +VE + + E VGP
Sbjct: 522 QITKEKDEAVRGQDFEKAGELRDREMDLRAQIA----AIVEKGKEMSKAETEAGDVGPTV 577
Query: 595 --DDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGL 652
DI + S W+GIPV++++ DE L+ +E+ L KRV+GQDEAV AISRA++R+RVGL
Sbjct: 578 TESDIQHIVSSWTGIPVEKVSTDESDRLLKMEDTLHKRVVGQDEAVKAISRAIRRARVGL 637
Query: 653 KDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
K+PNRP A+ +F GPTGVGK+ELAK+LAA YFGS
Sbjct: 638 KNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS 671
>gi|433461663|ref|ZP_20419269.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Halobacillus
sp. BAB-2008]
gi|432189835|gb|ELK46900.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Halobacillus
sp. BAB-2008]
Length = 819
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 266/614 (43%), Positives = 376/614 (61%), Gaps = 53/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL++E G +T
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLVSE---GEGIAAKALT------- 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + S Q+ + +G+ S + ++ K+V E +++ +R G++++ EHI
Sbjct: 52 ALGLESSKIQQEVEKLIGKGEKVSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G E + + R + G+
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG-----NNESTGGQNRRGGASGGQAT 163
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLTA A E IDPVIGR EI+R+IQ+L RRTKNNP+L+GE
Sbjct: 164 NANTP------TLDSLARDLTAIAKEGNIDPVIGRSKEIERVIQVLSRRTKNNPVLVGEP 217
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 218 GVGKTAIAEGLAQQIMNNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMEEIRQ 277
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 278 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 332
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ +++++IL GLR++YEAHH T ++I +AV S RYI+DR
Sbjct: 333 KDAALERRFQPIKVDEPTLDESIQILKGLRDRYEAHHRVTITDDSIESAVRFSDRYITDR 392
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQGS 557
+LPDKAIDL+DEA S+ + + + PP+ + Q++ V+ + VQ
Sbjct: 393 FLPDKAIDLIDEAASKVRLRSY-----------TAPPNLKELEQKLEEVRKEKDAAVQSQ 441
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPVQQ 611
+ AS+ D SE + L D+ E + V +DIA+V S W+G+PV +
Sbjct: 442 EFEK---AASLRD-SEQRLRDELEETKDEWKEKQGQEDSEVTVEDIASVVSTWTGVPVSK 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T DE L+ LEE L RVIGQ+EAV AIS+A++R+R GLKDP RP + +F GPTGVG
Sbjct: 498 MTKDESERLLNLEETLHNRVIGQEEAVKAISKAIRRARAGLKDPKRPIGSFIFLGPTGVG 557
Query: 672 KTELAKSLAACYFG 685
KTELA++LA FG
Sbjct: 558 KTELARALAESMFG 571
>gi|329929240|ref|ZP_08282999.1| negative regulator of genetic competence ClpC/MecB [Paenibacillus
sp. HGF5]
gi|328936799|gb|EGG33238.1| negative regulator of genetic competence ClpC/MecB [Paenibacillus
sp. HGF5]
Length = 818
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 265/612 (43%), Positives = 366/612 (59%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGDGIAAKALIGLGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVETLIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLG------------------SSEAV 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 149 SSHHGTPQNVSTPTLDSLARDLTAIAKEGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIINNEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+A++IL GLR++YEAHH K T EAI AV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPSPEEAIQILYGLRDRYEAHHRVKITDEAIEQAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ QE E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLHTY-----------TIPPNLKDQEAHLEDIRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDT-----SEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ DT E+ V + + V P+DIA V + W+GIPV ++
Sbjct: 433 SQEFEKAAALRDTEQKLREELEVTKNQWKEKQGRTDSEVTPEDIADVVANWTGIPVNKLK 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ LEE L RVIGQ+EAV A+SRAV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETERLLNLEEILHSRVIGQEEAVKAVSRAVRRARAGLKDPKRPMGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|167629433|ref|YP_001679932.1| clpc ATPase [Heliobacterium modesticaldum Ice1]
gi|167592173|gb|ABZ83921.1| clpc ATPase [Heliobacterium modesticaldum Ice1]
Length = 814
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 267/610 (43%), Positives = 372/610 (60%), Gaps = 54/610 (8%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAV 141
RFTERA K ++ ++ EA +L V ++HLLLGLI E L + +++ R V
Sbjct: 4 RFTERAQKVLLLAKEEAVALKHPAVGSEHLLLGLIREGEGIGAKALLSMHLDLEQVRRQV 63
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ + G+ S +++ + KR E A E R +G N++ EHI L
Sbjct: 64 IRLV--------------GEGASEPSEIGLTPRAKRALELANEEGRRQGVNYVGTEHILL 109
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL +G A RVL LG+ + + ++ L G +P+ S +G +AA
Sbjct: 110 GLIREGEGVAARVLAELGLTLEKVRHQVMTLLGGP------QPT-------PSGNGSSAA 156
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
+ +T AL +F DLT A + +DPVIGRE EI+R++QIL RRTKNNP+L+GE G
Sbjct: 157 AERGRKT--PALNEFGRDLTQLARDGKLDPVIGREREIERVVQILSRRTKNNPVLIGEPG 214
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTA+AEGLA RIV +VP L KR+++LD+ ++AG+K RGE E R+ ++ EI+++
Sbjct: 215 VGKTAVAEGLAQRIVDGKVPETLTGKRVVTLDLSSVVAGSKYRGEFEERLKKVMDEIRQA 274
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G+V+LFIDE+HTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E+
Sbjct: 275 GNVVLFIDELHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIER 329
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQP+ + EP +E+AV IL GLR++YEAHH + T EAI AAV LS RYISDRY
Sbjct: 330 DPALERRFQPITVGEPKREEAVAILKGLRDRYEAHHRVQITDEAIEAAVRLSDRYISDRY 389
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561
LPDKAIDL+DEA SR ++ F + PPD E R ++ + + + + L
Sbjct: 390 LPDKAIDLIDEAASRVRLQTF-----------TAPPDMKELESR-LEGLRKEKEAAVLSQ 437
Query: 562 DDVVASMGDTSEIVVESSLPSASDDDEPA------VVGPDDIAAVASLWSGIPVQQITAD 615
+ A+ E+ + + L D E A VV +DIA + S W+G+PV ++
Sbjct: 438 EFEKAAQLRDQEMQLRAQLEKQKSDWEHARGSANTVVREEDIAQIVSSWTGVPVTRLAES 497
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LEE+L +RVIGQDEAVAA+SRAV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 498 ESARLLKLEEELHRRVIGQDEAVAAVSRAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 557
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 558 ARALAEALFG 567
>gi|15896437|ref|NP_349786.1| ABC transporter ATPase [Clostridium acetobutylicum ATCC 824]
gi|337738395|ref|YP_004637842.1| ABC transporter ATPase [Clostridium acetobutylicum DSM 1731]
gi|384459905|ref|YP_005672325.1| ATPase with chaperone activity clpC, two ATP-binding domain protein
[Clostridium acetobutylicum EA 2018]
gi|15026259|gb|AAK81126.1|AE007814_4 ATPases with chaperone activity clpC, two ATP-binding domain
[Clostridium acetobutylicum ATCC 824]
gi|325510594|gb|ADZ22230.1| ATPase with chaperone activity clpC, two ATP-binding domain protein
[Clostridium acetobutylicum EA 2018]
gi|336293592|gb|AEI34726.1| ABC transporter ATPase [Clostridium acetobutylicum DSM 1731]
Length = 813
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 266/615 (43%), Positives = 372/615 (60%), Gaps = 58/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-----GITID 135
+F RF++RA K + ++Q EA++ V T+H+LLG++ R NG +S G+TI+
Sbjct: 2 MFGRFSDRAQKMIYYAQEEAQNFKHGYVGTEHILLGIL---RDENGKAQSLLANMGVTIE 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K R + ++ G + P + TKR+ E ++ +R+ +N+I
Sbjct: 59 KVRRLI------------EEYEGFGDSDLYKEEPPLTPRTKRLLEISLLEARNLNHNYIN 106
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
PEH+ L L +G A +L LGVD L + L G RE +
Sbjct: 107 PEHVLLALIRESEGVAFTILGNLGVDFERLRKEILDSLSG---------------REENT 151
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
KT+ S + L Q+ DLT A E +DPVIGR+ E QRI++ILCRRTKNNP
Sbjct: 152 GIKTSF--SSNTSVTPTLNQYGTDLTQMALEGKLDPVIGRDNETQRILEILCRRTKNNPC 209
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+G+ GVGKTAIAEGLA +IV+ +P L KR+++LD+ L+AG+K RGE E R+ ++
Sbjct: 210 LIGDPGVGKTAIAEGLAQKIVEGNIPEILKDKRVITLDVSSLVAGSKYRGEFEERLKKVM 269
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
+EI+ + +VILFIDE+HT++G+G G +G +D SN+LKPSL RGE+QCI +TT +E+
Sbjct: 270 TEIKAAKNVILFIDEIHTIVGAG----GAEG-AIDASNILKPSLARGEIQCIGATTTEEY 324
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS+E+AV+IL GLR+KYEAHH K T +AI AAV+LS R
Sbjct: 325 RRYIEKDAALERRFQPVDVGEPSKEEAVQILEGLRDKYEAHHGVKITDDAIEAAVNLSTR 384
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI DR+LPDKAIDL+DEA ++ I+ L+ PPD QE + E
Sbjct: 385 YIQDRFLPDKAIDLIDEAAAKVRIQ-----------NLTAPPDLKNQEEELEKTTREKSD 433
Query: 556 GSRLKYDDVVASMGDTSE---IVVESSLPSASD--DDEPAVVGPDDIAAVASLWSGIPVQ 610
RL+ + A + D + I +E + + D+E +V +AAV + W+ IPV+
Sbjct: 434 AIRLQDFEKAAKLRDKEKKLRIAIEEFKKNWKNTSDNENYIVTQKQVAAVVAKWTSIPVE 493
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T E L+ LE L KRVIGQ+EAV +SRAV+R+RVGLKDP RP + +F GPTGV
Sbjct: 494 KLTEKESERLLKLESILHKRVIGQEEAVEYVSRAVRRARVGLKDPKRPIGSFIFLGPTGV 553
Query: 671 GKTELAKSLAACYFG 685
GKTEL+K+LA FG
Sbjct: 554 GKTELSKALAEAMFG 568
>gi|354585457|ref|ZP_09004344.1| ATPase AAA-2 domain protein [Paenibacillus lactis 154]
gi|353188726|gb|EHB54246.1| ATPase AAA-2 domain protein [Paenibacillus lactis 154]
Length = 818
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 265/612 (43%), Positives = 368/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGDGIAAKALIGLGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVETLIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLG------------------SSEAV 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 149 SSHHGTPQNVSTPTLDSLARDLTAIAKEGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIINNEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+A++IL GLR++YEAHH K T EAI AV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPSPEEAIQILYGLRDRYEAHHRVKITDEAIEQAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ QE E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLNTY-----------TIPPNLKDQEAHLEDIRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ DT + + E + + E + V P+DIA V + W+GIPV ++
Sbjct: 433 SQEFEKAAALRDTEQKLREELEITKNQWKEKQGRTDSEVTPEDIADVVANWTGIPVNKLK 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ LEE L RVIGQ+EAV A+SRAV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETERLLNLEEILHSRVIGQEEAVKAVSRAVRRARAGLKDPKRPMGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|118488171|gb|ABK95905.1| unknown [Populus trichocarpa]
Length = 835
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 277/623 (44%), Positives = 389/623 (62%), Gaps = 66/623 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LG D +++ V R+ GE + +++G
Sbjct: 108 LLLGLLREGEGVAARVLENLGADPSNIRT-QVIRMVGESTE--------------NLAGS 152
Query: 259 TAALKSPGRT--RASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
T PG + + LE++ +LT A E +DPV+GR+ +I+R+IQIL RRTKNNP L
Sbjct: 153 TVG---PGSSNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVIQILGRRTKNNPCL 209
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 210 IGEPGVGKTAIAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLME 269
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI++S +++LFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 270 EIKQSDEIMLFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYR 324
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQPV + EPS ++ ++IL GLRE+YE HH ++T E++ AA LS +Y
Sbjct: 325 KHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLSYQY 384
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQ 555
ISDR+LPDKAIDL+DEAGSR + + +E + + +E+R + + E V+
Sbjct: 385 ISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEAR---------ELEKEVRQITKEKDEAVR 435
Query: 556 GS--------RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASL 603
G R + D+ A + +VE + + E VGP DI + S
Sbjct: 436 GQDFEKAGELRDREMDLRAQIA----AIVEKGKEMSKAETEAGDVGPTVTESDIQHIVSS 491
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIPV++++ DE L+ +E+ L KRV+GQDEAV AISRA++R+RVGLK+PNRP A+ +
Sbjct: 492 WTGIPVEKVSTDESDRLLKMEDTLHKRVVGQDEAVKAISRAIRRARVGLKNPNRPIASFI 551
Query: 664 FCGPTGVGKTELAKSLAACYFGS 686
F GPTGVGK+ELAK+LAA YFGS
Sbjct: 552 FSGPTGVGKSELAKALAAYYFGS 574
>gi|148239871|ref|YP_001225258.1| ATP-dependent Clp protease ATP-binding subunit clpA-like protein
[Synechococcus sp. WH 7803]
gi|147848410|emb|CAK23961.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Synechococcus sp. WH 7803]
Length = 844
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 271/618 (43%), Positives = 379/618 (61%), Gaps = 59/618 (9%)
Query: 94 IFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAREAVVSIWHSTNNQ 151
+ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR V I
Sbjct: 1 MLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARVEVEKII------ 54
Query: 152 DTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSA 211
+G F A ++PF+ KRV E ++E +R G+N+I EH+ LGL +G A
Sbjct: 55 ------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVA 107
Query: 212 GRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRAS 271
RVL+ LGVD++ + V R+ GE A+ + + S G T+
Sbjct: 108 ARVLENLGVDLSKVR-TQVIRMLGETAE---------------VGAGGSGSGSKGSTKTP 151
Query: 272 ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGL 331
L++F +LT A E +DPV+GR++EI R+IQIL RRTKNNP+L+GE GVGKTAIAEGL
Sbjct: 152 TLDEFGNNLTQLAGEAKLDPVVGRQSEIDRVIQILGRRTKNNPVLIGEPGVGKTAIAEGL 211
Query: 332 AIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391
A RI Q ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI+ +G+VIL IDEV
Sbjct: 212 AQRIQQGDIPDILEDKRVLTLDIGLLVAGTKYRGEFEERLKKIMEEIKAAGNVILVIDEV 271
Query: 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQP 451
HTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+R E+D AL RRFQP
Sbjct: 272 HTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKHIERDAALERRFQP 326
Query: 452 VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511
V + EPS +D + IL GLRE+YE HH + T EA+ AA L RYISDR+LPDKAIDL+D
Sbjct: 327 VTVGEPSIDDTIEILKGLRERYEQHHRLRITDEALEAAATLGDRYISDRFLPDKAIDLID 386
Query: 512 EAGSRAHI--------------ELFKRKKEQQTCI----LSKPPDDYWQEIRTVQAMHEV 553
EAGSR + EL +KE++ + S+ + +E+ + +
Sbjct: 387 EAGSRVRLMNSKLPPEAKEVDKELRAVQKEKEDAVREQDFSRAGELRDKEVELRDKIRSL 446
Query: 554 VQGSRLKY-DDVVASMGDTSEIVVESSLPSASDD----DEPAVVGPDDIAAVASLWSGIP 608
+Q SR D S +++ V S+ + + VV +DIA + + W+G+P
Sbjct: 447 LQSSREDSPSDNQQSEDQATDVDVASTESEGATELAVTGTTPVVNEEDIAQIVASWTGVP 506
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
VQ++T E + L+ +EE L KR+IGQDEAV A+S+A++R+RVGLK+PNRP A+ +F GPT
Sbjct: 507 VQKLTESESVKLLNMEETLHKRLIGQDEAVKAVSKAIRRARVGLKNPNRPIASFIFSGPT 566
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL K+LAA +FGS
Sbjct: 567 GVGKTELTKALAAYFFGS 584
>gi|187776547|ref|ZP_02993020.1| hypothetical protein CLOSPO_00059 [Clostridium sporogenes ATCC
15579]
gi|187775206|gb|EDU39008.1| ATPase family associated with various cellular activities (AAA)
[Clostridium sporogenes ATCC 15579]
Length = 814
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 265/617 (42%), Positives = 370/617 (59%), Gaps = 56/617 (9%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLE-SGITIDK 136
I+ +F RFTERA K ++ +Q EA+ V T+H+LLG++ ED L SGIT DK
Sbjct: 2 INMMFGRFTERAQKVLMNAQEEAEKFKHGYVGTEHILLGILIEDGVAKQLLNNSGITEDK 61
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
R+ + + +G+ ++P + TKR+ E ++ +R+ +N+I P
Sbjct: 62 VRQLI------------ERYEGKGEMDLYKNEIPLTPRTKRLLEMSLLEARNLNHNYITP 109
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGE--LAKEGREPSLAKGVRENS 254
EHI LGL +G A +L LG+DV L + L GE L EG
Sbjct: 110 EHILLGLIREAEGVAFTILSNLGLDVERLKKELIKNLSGEEMLKDEG------------- 156
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S K++ +P L+QF DLT A E IDPVIGR+ E QR+++ILCRRTKNNP
Sbjct: 157 -SKKSSKSSTP------TLDQFGRDLTEMAEEGKIDPVIGRDKETQRVLEILCRRTKNNP 209
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
L+GE GVGKTAIAEGLA I+ +P L +KR+++LD+ ++AGAK RGE E R+ +
Sbjct: 210 CLIGEPGVGKTAIAEGLAQNIINGNIPEILKNKRVVTLDLTSMIAGAKYRGEFEDRLKKI 269
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ E++ S D ILFIDE+HT++G+G +D +N+LKP+L RGE+QCI +TT DE
Sbjct: 270 MEEVRNSKDTILFIDEIHTIVGAGAAE-----GAIDAANILKPALARGEIQCIGATTLDE 324
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + EP++E+ + IL GLR+KYEAHH KFT +AI AAV+LS
Sbjct: 325 YRKYIEKDSALERRFQPINVGEPTKEETIEILKGLRDKYEAHHRVKFTDDAIYAAVNLSD 384
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI DR+LPDKAIDL+DEAGS+ IE L PPD E + + + E
Sbjct: 385 RYIRDRFLPDKAIDLIDEAGSKVRIE-----------NLIAPPDLKNIEEQLDKVVKEKE 433
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPV 609
R++ + A++ D + + E D + +V IA+V S W+ IPV
Sbjct: 434 DAIRVQDFEKAANLRDKEKELKEKLEGLKKDWNAEKEGSNLIVSEQQIASVVSKWTNIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ LE+ L RVIGQ+EA+ ++S++V+R+RVGLKDP RP + +F GPTG
Sbjct: 494 NKLTEKESERLLKLEDILHNRVIGQEEAIKSVSKSVRRARVGLKDPKRPIGSFIFLGPTG 553
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL K+LA FG+
Sbjct: 554 VGKTELTKALAEAMFGN 570
>gi|406983152|gb|EKE04399.1| hypothetical protein ACD_20C00084G0019 [uncultured bacterium]
Length = 837
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 269/610 (44%), Positives = 378/610 (61%), Gaps = 49/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +GI +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGIAAKTLKAM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ S + + +G F A ++PF+ KRV E + + +R G+N+I EH+
Sbjct: 53 GVNLKDS--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSWDEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LGVD+N + + V R+ GE + G +
Sbjct: 110 LGLIREGEGVAARVLENLGVDLNKVRS-NVIRMLGE-TRTG-----------------AS 150
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ S GR++ L++F +LT A E+ +DPV+GRE EI+R++QIL RRTKNNP+L+GE
Sbjct: 151 STTSQGRSKTPTLDEFGTNLTQAAQEQRLDPVVGREKEIERVVQILGRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RIV ++P L KR++ LDMGLL+AG K RGE E R+ ++ EI+
Sbjct: 211 GVGKTAIAEGLANRIVSGDIPEILEDKRLVQLDMGLLVAGTKYRGEFEERLKKIMDEIRG 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VIL IDE+HTLIG+G +D +N+LKP L RGELQ I +TT DE+R E
Sbjct: 271 AGNVILIIDELHTLIGAGAA-----EGAIDAANILKPVLSRGELQVIGATTLDEYRKHVE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRFQPV + +PS E+ + I+ GLR KYE HH + AI+ AV LS RYI+DR
Sbjct: 326 RDAALERRFQPVFVDQPSVEETMEIIRGLRHKYEEHHKLIISDAAIDYAVKLSDRYITDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIE---LFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+LPDKAIDL+DEA SR ++ L KE + L + D Q IR E + S
Sbjct: 386 FLPDKAIDLIDEASSRVRLQASSLPPEGKEIEKE-LKQVIRDKEQAIRD----QEFEKAS 440
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDD-EPAVVGPDDIAAVASLWSGIPVQQITADE 616
+L+ D+ A D E + E S ++ + +VV ++IA + S W+G+PV ++T E
Sbjct: 441 QLR--DIEA---DLKEKIREISQKWKTEQEANKSVVTEEEIAYIVSSWTGVPVTKLTEGE 495
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ LE+ L KRVIGQ A+ +IS+A++R+RVGLK P+RP + +F GPTGVGKTELA
Sbjct: 496 TDRLLKLEDTLHKRVIGQHSAIVSISKAIRRARVGLKSPSRPIGSFIFSGPTGVGKTELA 555
Query: 677 KSLAACYFGS 686
K+LA FGS
Sbjct: 556 KALAESMFGS 565
>gi|408355460|ref|YP_006843991.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Amphibacillus
xylanus NBRC 15112]
gi|407726231|dbj|BAM46229.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Amphibacillus
xylanus NBRC 15112]
Length = 811
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 272/612 (44%), Positives = 369/612 (60%), Gaps = 53/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA LG + T+H+LLGLI E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRLGHHNIGTEHILLGLIREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ + + A G ++ + ++ K+V E +++ +R G+ ++ EHI
Sbjct: 50 LHALNLEKDKIQEEVEALIGVGSQTSQALHYTPRAKKVIELSMDEARKLGHTYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L G S+ KG ++ S
Sbjct: 110 LGLIREGEGIAARVLNNLGVSLNRARQQVLQLL-------GSNESVRKGQARHTQS---- 158
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P T L+ DLT A E +DPVIGRE EI+R+IQ+L RRTKNNP+L+GE
Sbjct: 159 ---NPAST--PTLDSLARDLTQTAREGNVDPVIGREKEIERVIQVLSRRTKNNPVLIGEP 213
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTA+AEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 214 GVGKTAVAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMEEIRQ 273
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 274 AGNVILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTIDEYRKYIE 328
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E+++ IL GLR++YEAHH T EAI AA HLS+RYI+DR
Sbjct: 329 KDAALERRFQPIRVDEPTVEESIEILKGLRDRYEAHHRVTITDEAIEAAAHLSSRYITDR 388
Query: 501 YLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQAMHEV 553
+LPDKAIDL+DEAGSR + + ++ E + + K D QE A+ +
Sbjct: 389 FLPDKAIDLIDEAGSRVRLRSYTAPSNLKELENKLTEIRKEKDAAVQSQEFEKAAALRD- 447
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
Q +LK + E+ E +D VV +DIA+V S W+G+PV +T
Sbjct: 448 -QEQKLKKE---------LELTKEKWQEKQGKEDSRVVV--EDIASVVSNWTGVPVDSLT 495
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
DE L+ LE L RVIGQ EAV A+S+A++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 496 KDEADRLLNLESILHGRVIGQSEAVTAVSKAIRRARAGLKDPKRPIGSFIFLGPTGVGKT 555
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 556 ELARALAEAMFG 567
>gi|297582418|ref|YP_003698198.1| ATPase AAA-2 domain-containing protein [Bacillus selenitireducens
MLS10]
gi|297140875|gb|ADH97632.1| ATPase AAA-2 domain protein [Bacillus selenitireducens MLS10]
Length = 815
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 272/638 (42%), Positives = 377/638 (59%), Gaps = 56/638 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + T+H+LLGLI E G+ DK +
Sbjct: 2 MFGRFTERAQKVLSLAQEEASRLGHSNIGTEHILLGLIREGEGIAAKALKGLGLGADKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G A ++ ++ K+V E +++ +R G++++ EH
Sbjct: 62 DEVEKLI--------------GVGEQPAGQVHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N + L G+ S+A G
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGNSDNGNGQNGSMAG-------QGG 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A +P L+ DLTA A E +DPVIGR EIQR+IQIL RRTKNNP+L+G
Sbjct: 161 QAGASTP------TLDSLARDLTAIAKEGQVDPVIGRSKEIQRVIQILSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAI+EGLA +IV EVP L +KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 215 EPGVGKTAISEGLAQQIVDNEVPEILRNKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 275 RNAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPSLARGELQCIGATTMDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++V+IL GLR++YEAHH T EAI AAV +S RYIS
Sbjct: 330 IEKDAALERRFQPIQVDEPTVEESVQILAGLRDRYEAHHRVTITDEAIKAAVEMSDRYIS 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ +E + E +
Sbjct: 390 DRFLPDKAIDLIDEAGSKVRLSTY-----------TAPPNLKEKEQELEELRKEKDASVQ 438
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + AS+ D +E ++ L + D+ E + V +DIA V S W+G+PV ++
Sbjct: 439 SQEFEKAASLRD-NEQKLKDELETLKDEWKKKQGQEDSEVTMEDIAQVVSTWTGVPVSKL 497
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +E+ L RVIGQDEAV A+S+AV+R+R GLKDP RP + +F GPTGVGK
Sbjct: 498 AEEETDRLLKMEDILHGRVIGQDEAVTAVSKAVRRARAGLKDPKRPIGSFIFLGPTGVGK 557
Query: 673 TELAKSLAACYFGS----VRIHYLFFPSPFNSVKVALS 706
TELA+++A FG +RI + N+ ++ S
Sbjct: 558 TELARAVAETLFGDEDAIIRIDMSEYMEKHNTSRLVGS 595
>gi|20808693|ref|NP_623864.1| chaperone ATPase [Thermoanaerobacter tengcongensis MB4]
gi|254478740|ref|ZP_05092109.1| ATPase, AAA family [Carboxydibrachium pacificum DSM 12653]
gi|20517331|gb|AAM25468.1| ATPases with chaperone activity, ATP-binding subunit
[Thermoanaerobacter tengcongensis MB4]
gi|214035305|gb|EEB76010.1| ATPase, AAA family [Carboxydibrachium pacificum DSM 12653]
Length = 816
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 266/614 (43%), Positives = 366/614 (59%), Gaps = 55/614 (8%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKA 137
++F RFTERA KA+ +Q EA+S + V T+H+LLGL+ ED + G+T +
Sbjct: 2 AMFGRFTERAQKALYLAQEEARSFYHNYVGTEHILLGLLKEDEGIAARVLKKLGVTYEAT 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
RE V+S+ N P P KRV E ++ +R +++ E
Sbjct: 62 REKVLSLIGMGNI-----------PGDVVGYTP---RAKRVLELSLSEARRFNTSYVGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A R+L G+D N + V L E A + S AK
Sbjct: 108 HILLGLLREGEGVAVRILMEQGIDFNRVREEIVKMLSEEPAAGPSKVSKAKN-------- 159
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
T L QF DLT A + +DPVIGRE EI+R+IQIL RRTKNNP+L+
Sbjct: 160 ----------TNTPTLNQFGRDLTDLARDGKLDPVIGREKEIERVIQILSRRTKNNPVLI 209
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI EGLA +IV+ EVP L KR+++LD+ L+AG K RGE E R+ T+I+E
Sbjct: 210 GEPGVGKTAIVEGLAQKIVEGEVPEILKDKRVVTLDLASLVAGTKYRGEFEDRLKTVINE 269
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+ K+G+VILF+DE+HTLIG+G +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 270 VIKAGNVILFVDEMHTLIGAGAA-----EGAIDASNILKPALARGEIQVIGATTLDEYRK 324
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQP+++ EP+ E+ + IL GLR+KYEAHH K T EA+ AA LS RYI
Sbjct: 325 YVERDPALERRFQPIMVEEPTVEETIEILKGLRDKYEAHHRVKITDEALEAAAKLSHRYI 384
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDL+DEA SR ++ ++ PP+ E + + E +
Sbjct: 385 TDRFLPDKAIDLIDEAASRVRLK-----------TVTAPPEIKELEDKINDLIKEKEEAI 433
Query: 558 RLKYDDVVASMGDTSEIVVE--SSLPSASDDD---EPAVVGPDDIAAVASLWSGIPVQQI 612
R + + A + D + + E L + + E VGP++IA V S+W+GIPV+++
Sbjct: 434 RTQEYEKAAKIRDEEQKLREQLEELKAKWQQNSLSEEKSVGPEEIAQVVSMWTGIPVKKL 493
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ LEE L +RVIGQDEAV A+++A++R+RVGLKDP RP + +F GPTGVGK
Sbjct: 494 AEEESERLLHLEEILHERVIGQDEAVEAVAKAIRRARVGLKDPKRPIGSFIFLGPTGVGK 553
Query: 673 TELAKSLAACYFGS 686
TEL+K+LA FG
Sbjct: 554 TELSKALAEALFGD 567
>gi|416380079|ref|ZP_11684027.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Crocosphaera
watsonii WH 0003]
gi|357265734|gb|EHJ14459.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Crocosphaera
watsonii WH 0003]
Length = 809
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 269/604 (44%), Positives = 375/604 (62%), Gaps = 65/604 (10%)
Query: 95 FSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAREAVVSIWHSTNNQD 152
+Q EA+ LG + V T+ +LLGLI E L+S G+ + AR V I
Sbjct: 1 MAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKII------- 53
Query: 153 TDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAG 212
+G F A ++PF+ KRV E ++E +R G+N+I EH+ LGL +G A
Sbjct: 54 -----GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAA 107
Query: 213 RVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASA 272
RVL+ LGV+++ + + +L GE A E + G T PGRT+
Sbjct: 108 RVLENLGVNLSKVRTQVIRQL-GETA-------------EVAAGGGT-----PGRTKTPT 148
Query: 273 LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLA 332
L++F +LT A + +DPV+GR+ EI+R+IQIL RRTKNNP+L+GE GVGKTAIAEGLA
Sbjct: 149 LDEFGSNLTQLAGDGQLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLA 208
Query: 333 IRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVH 392
RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ EI+++G+VIL IDEVH
Sbjct: 209 QRIANKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEIRQAGNVILVIDEVH 268
Query: 393 TLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPV 452
TLIG+G +D +N+LKP+L RGELQCI +TT DE+R E+D AL RRFQPV
Sbjct: 269 TLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIERDAALERRFQPV 323
Query: 453 LISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDE 512
++ EPS ++ V IL GLRE+YE HH K EA++AA LS RYISDRYLPDKAIDL+DE
Sbjct: 324 MVGEPSVDETVEILFGLRERYEQHHKLKILDEALDAAAKLSDRYISDRYLPDKAIDLIDE 383
Query: 513 AGSRAHIELFKRKKEQQTCILSKPP---DDYWQEIRTVQAMHEVVQGSRLKYDDVVASMG 569
AGSR + I S+ P + +E+RT+ + + R + D +
Sbjct: 384 AGSRVRL------------INSQLPPAAKELDKELRTI--LKQKDDAVRSQDFDRAGELR 429
Query: 570 DTSEIVVESSLPSAS-------DDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVG 622
D E+ ++ + S S D EP V ++IA + + W+G+PV ++T E L+
Sbjct: 430 D-QEMDIKEQIRSISTAKKGEGDSAEP-FVDAEEIAHIVASWTGVPVNKLTETESEKLLH 487
Query: 623 LEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAAC 682
+E+ L +R+IGQ++AV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTEL KSLAA
Sbjct: 488 MEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFVFSGPTGVGKTELTKSLAAY 547
Query: 683 YFGS 686
+FGS
Sbjct: 548 FFGS 551
>gi|51209900|ref|YP_063564.1| Clp protease ATP binding subunit [Gracilaria tenuistipitata var.
liui]
gi|50657654|gb|AAT79639.1| Clp protease ATP binding subunit [Gracilaria tenuistipitata var.
liui]
Length = 823
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 260/613 (42%), Positives = 373/613 (60%), Gaps = 51/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +GI +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGIAAQVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 NVNLKDA--RIEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
+GL +G A RVL+ L V+V + + L + + +
Sbjct: 110 MGLVREGEGVAARVLENLAVNVASIRTEVIQMLG-----------------DTTEANTNG 152
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ R++ LE+F +LT A E ++DPV+GR+ EI+R+IQIL RRTKNNP+L+GE
Sbjct: 153 NNNTQTRSKTPTLEEFGSNLTELAIEGILDPVVGRQKEIERVIQILGRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI ++P L K +++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 213 GVGKTAIAEGLAQRIANKDIPSILEDKLVVTLDVGLLVAGTKYRGEFEERLKRIMDEIKS 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ +++L IDEVHTLIG+G +D +NLLKP+L RGELQCI +TT +E+R E
Sbjct: 273 ANNIVLVIDEVHTLIGAGAA-----EGAIDAANLLKPALARGELQCIGATTLEEYRKHIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPVL+ EPS E+ + IL GLR++YE HH K + EA+ AA + +YISDR
Sbjct: 328 KDAALERRFQPVLVGEPSVEETIEILFGLRDRYEKHHQLKMSDEALAAAAKYANQYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRL 559
+LPDKAIDL+DEAGSR + L + +E+R+V + E ++
Sbjct: 388 FLPDKAIDLIDEAGSRVRL---------LNSQLPPAARELDKELRSVLKTKDEAIRAQ-- 436
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPA------VVGPDDIAAVASLWSGIPVQQIT 613
KY+ EI + + + S +EP VV DDIA + + W+GIPV ++T
Sbjct: 437 KYEKAEQYRTREMEIKAQIAAIAQSKKNEPNVQIEDPVVTEDDIAEIVAFWTGIPVTKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKT
Sbjct: 497 KSESEKLMHMEETLHNRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKT 556
Query: 674 ELAKSLAACYFGS 686
EL K+LA+ +FGS
Sbjct: 557 ELTKALASYFFGS 569
>gi|149183498|ref|ZP_01861926.1| ClpC [Bacillus sp. SG-1]
gi|148848792|gb|EDL63014.1| ClpC [Bacillus sp. SG-1]
Length = 813
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 268/612 (43%), Positives = 366/612 (59%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + +Q EA L + T+H+LLGL+ E G G++ +K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLSHSNIGTEHILLGLVREGEGIAAKGLTALGLSPEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ GK ++ + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI--------------GKGKENSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G G + G
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGSNESNGHQ------------GGS 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 155 NTNANTP------TLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIVNNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++V+IL GLR++YEAHH T EAI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIQVDEPTAEESVQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DE+GS+ + + + PP+ E++ + E +
Sbjct: 384 DRFLPDKAIDLIDESGSKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVES-----SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + E E V +DIA V S W+GIPV ++
Sbjct: 433 SQEFEKAASLRDTEQRLREELEDTKKTWKEKQGQENTEVTVEDIAKVVSSWTGIPVSKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L RVIGQDEAV A+S+AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETDKLLKLEEILHSRVIGQDEAVKAVSKAVRRARAGLKDPKRPIGSFVFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESMFG 564
>gi|315649734|ref|ZP_07902818.1| ATPase AAA-2 domain protein [Paenibacillus vortex V453]
gi|315274922|gb|EFU38298.1| ATPase AAA-2 domain protein [Paenibacillus vortex V453]
Length = 818
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 264/612 (43%), Positives = 368/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGDGIAAKALIGLGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVETLIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLG------------------SSEAV 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 149 SSHHGTPQNVSTPTLDSLARDLTAIAKEGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIINNEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+++LFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIVLFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+A++IL GLR++YEAHH K T EAI AV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPSPEEAIQILYGLRDRYEAHHRVKITDEAIEQAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ QE E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLHTY-----------TIPPNLKDQEAHLEDIRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ DT + + E + + E + V P+DIA V + W+GIPV ++
Sbjct: 433 SQEFEKAAALRDTEQKLREELEITKNQWKEKQGRTDSEVTPEDIADVVANWTGIPVNKLK 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ LEE L RVIGQ+EAV A+SRAV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETERLLNLEEILHSRVIGQEEAVKAVSRAVRRARAGLKDPKRPMGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|312127146|ref|YP_003992020.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311777165|gb|ADQ06651.1| ATPase AAA-2 domain protein [Caldicellulosiruptor hydrothermalis
108]
Length = 829
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 279/639 (43%), Positives = 379/639 (59%), Gaps = 69/639 (10%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAED-------RHPNGFLESGITIDK 136
RFTERA KA++ +Q+ A LG + V T+HLLLGLI E H G E + ID+
Sbjct: 5 RFTERAEKAIMLAQQAAAELGHNYVGTEHLLLGLIREGGGIAARVLHSQGVTEEKV-IDE 63
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
E + +G F+ TKRVFE A +R G ++I+
Sbjct: 64 IEELI----------------GRGDYQLPQPPTGFTPRTKRVFEIAFMEARRLGSSYIST 107
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EHI L + + A R+L LGVD L + +L E AK ++
Sbjct: 108 EHILLAIMREGESVAVRILMDLGVDPQRLFE-EIMKLLNEDAK--------------NVG 152
Query: 257 GKTAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
G + + +T+ + L QF DLT A E IDPVIGRE EI+R+IQIL RRTKNNP
Sbjct: 153 GVSPQQQINFQTQNTPTLNQFSRDLTQLALEGKIDPVIGREKEIERVIQILSRRTKNNPC 212
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAI EGLA +IV+ VP L +KR+++LD+ ++AG+K RGE E R+ +
Sbjct: 213 LIGEPGVGKTAIVEGLAQKIVEGNVPELLRNKRVVALDLSAMVAGSKFRGEFEERLKKAM 272
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
E++K+G+VILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE+
Sbjct: 273 EEVRKAGNVILFIDEMHTIIGAGAAE-----GAIDASNILKPALARGEIQVIGATTLDEY 327
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+L+ EP+ E+A++IL GLR+KYEAHH K T EAI AAV LS +
Sbjct: 328 RKHIEKDAALERRFQPILVGEPTPEEAIQILKGLRDKYEAHHGVKITDEAIKAAVELSTK 387
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI+DRYLPDKAIDL+DEA SR + ++ + PP E + + E +
Sbjct: 388 YITDRYLPDKAIDLIDEAASRVRLRMY-----------TLPPHVKEFEEKIEKLEKEKEE 436
Query: 556 GSRLKYDDVVASMGDTSEIV-----VESSLPSASDDDEPA--VVGPDDIAAVASLWSGIP 608
RL+ + A + D EI+ +E S ++D + +V DDIA + S W+GIP
Sbjct: 437 AIRLQEYEKAAKIRD--EIMKLRQELEKIKNSWTNDQQKTQPIVTEDDIAYIVSSWTGIP 494
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T DE L+ LEE L +RV+GQDEAV A++RA++R RVGLKDP RP + +F GPT
Sbjct: 495 VNKLTEDESERLLKLEEVLHRRVVGQDEAVKAVARAIRRGRVGLKDPKRPIGSFIFLGPT 554
Query: 669 GVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GVGKTELA++LA FG+ +RI + FN K+
Sbjct: 555 GVGKTELARALAEALFGTEDAMIRIDMSEYMEKFNVSKL 593
>gi|302872270|ref|YP_003840906.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
obsidiansis OB47]
gi|302575129|gb|ADL42920.1| ATPase AAA-2 domain protein [Caldicellulosiruptor obsidiansis OB47]
Length = 829
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 279/639 (43%), Positives = 379/639 (59%), Gaps = 69/639 (10%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAED-------RHPNGFLESGITIDK 136
RFTERA KA++ +Q+ A LG + V T+HLLLGLI E H G E + ID+
Sbjct: 5 RFTERAEKAIMLAQQAAAELGHNYVGTEHLLLGLIREGGGIAARVLHSQGVTEEKV-IDE 63
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
E + +G F+ TKRVFE A +R G ++I+
Sbjct: 64 IEELI----------------GRGDYQLPQPPTGFTPRTKRVFEIAFMEARRLGSSYIST 107
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EHI L + + A R+L LGVD L + +L E AK ++
Sbjct: 108 EHILLAIMREGESVAVRILMDLGVDPQRLFE-EIMKLLNEDAK--------------NVG 152
Query: 257 GKTAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
G + + +T+ + L QF DLT A E IDPVIGRE EI+R+IQIL RRTKNNP
Sbjct: 153 GVSPQQQINFQTQNTPTLNQFSRDLTQLALEGKIDPVIGREKEIERVIQILSRRTKNNPC 212
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAI EGLA +IV+ VP L +KR+++LD+ ++AG+K RGE E R+ +
Sbjct: 213 LIGEPGVGKTAIVEGLAQKIVEGNVPELLRNKRVVALDLSAMVAGSKFRGEFEERLKKAM 272
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
E++K+G+VILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE+
Sbjct: 273 EEVRKAGNVILFIDEMHTIIGAGAAE-----GAIDASNILKPALARGEIQVIGATTLDEY 327
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+L+ EP+ E+A++IL GLR+KYEAHH K T EAI AAV LS +
Sbjct: 328 RKHIEKDAALERRFQPILVGEPTPEEAIQILKGLRDKYEAHHGVKITDEAIKAAVELSTK 387
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI+DRYLPDKAIDL+DEA SR + ++ + PP E + + E +
Sbjct: 388 YITDRYLPDKAIDLIDEAASRVRLRMY-----------TLPPHVKEFEEKIEKLEKEKEE 436
Query: 556 GSRLKYDDVVASMGDTSEIV-----VESSLPSASDDDEPA--VVGPDDIAAVASLWSGIP 608
RL+ + A + D EI+ +E S ++D + +V DDIA + S W+GIP
Sbjct: 437 AIRLQEYEKAAKIRD--EIMKLRQELEKIKNSWTNDQQKTQPIVTEDDIAYIVSSWTGIP 494
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T DE L+ LEE L +RV+GQDEAV A++RA++R RVGLKDP RP + +F GPT
Sbjct: 495 VNKLTEDESERLLKLEEVLHRRVVGQDEAVKAVARAIRRGRVGLKDPKRPIGSFIFLGPT 554
Query: 669 GVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GVGKTELA++LA FG+ +RI + FN K+
Sbjct: 555 GVGKTELARALAEALFGTEDAMIRIDMSEYMEKFNVSKL 593
>gi|345021357|ref|ZP_08784970.1| ATP-dependent Clp protease [Ornithinibacillus scapharcae TW25]
Length = 808
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 268/620 (43%), Positives = 374/620 (60%), Gaps = 72/620 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F RFTERA K + SQ EA LG + + T+H+LLGL+ R G LES G+ +
Sbjct: 2 MFGRFTERAQKVLALSQEEAVRLGHNNIGTEHILLGLV---REGEGIAAKALESLGLEVS 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K +E V + + +P + P K+V E + + +R G++++
Sbjct: 59 KIQEEVEKLIGTGK-----------QPMQTIHYTP---RAKKVVELSQDEARKLGHSYVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL---QGELAKEGREPSLAKGVRE 252
EHI LGL +G A RVL LGV +N + L + + A++GR
Sbjct: 105 TEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESQAARQGR---------- 154
Query: 253 NSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKN 312
G+ + +P L+ DLTA A E IDPVIGR EI+R+IQ+L RRTKN
Sbjct: 155 ----GQASNANTP------TLDSLARDLTASAKEGNIDPVIGRSKEIERVIQVLSRRTKN 204
Query: 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVT 372
NP+L+GE GVGKTA+AEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+
Sbjct: 205 NPVLIGEPGVGKTAVAEGLAQQIINNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLK 264
Query: 373 TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432
++ EI+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT
Sbjct: 265 KVMEEIRQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTL 319
Query: 433 DEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492
+E+R EKD AL RRFQP+ + EP+ E+ ++IL GLR++YEAHH T EAI+AA L
Sbjct: 320 EEYRKYIEKDAALERRFQPIQVDEPTLEETIQILKGLRDRYEAHHRVTITDEAIDAAAKL 379
Query: 493 SARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAM 550
S RYI+DR+LPDKAIDL+DEAGS+ + + + PP+ D Q++ V+
Sbjct: 380 SDRYITDRFLPDKAIDLIDEAGSKVRLRSY-----------TVPPNLKDLEQKLEEVRKE 428
Query: 551 HE-VVQGSRLKYDDVVASMGDT-----SEIVVESSLPSASDDDEPAVVGPDDIAAVASLW 604
+ VQ + AS+ D+ E+ + E + V +DIA++ S+W
Sbjct: 429 KDAAVQSQEF---EKAASLRDSEQRLREELETTKNQWKEKQGQEDSQVTVEDIASIVSIW 485
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+G+PV ++T DE L+ LEE L RVIGQ+EAV AIS+A++R+R GLKDP RP + +F
Sbjct: 486 TGVPVSKLTKDETNRLLNLEEVLHDRVIGQEEAVKAISKAIRRARAGLKDPKRPIGSFIF 545
Query: 665 CGPTGVGKTELAKSLAACYF 684
GPTGVGKTELA++LA F
Sbjct: 546 LGPTGVGKTELARALAEAMF 565
>gi|282898552|ref|ZP_06306540.1| UvrB/UvrC protein [Cylindrospermopsis raciborskii CS-505]
gi|281196420|gb|EFA71329.1| UvrB/UvrC protein [Cylindrospermopsis raciborskii CS-505]
Length = 817
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 256/611 (41%), Positives = 380/611 (62%), Gaps = 55/611 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT A++ ++ +Q EA+ LG + V T+ +LLGLI E + G+T+ AR
Sbjct: 1 MFEHFTSEAIRVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLTDLGVTLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F ++PF+ K +FE + + G+N+I EH
Sbjct: 61 REVEKII------------GRGSGFVPP-EIPFTPKVKSLFEQSFREAHGLGHNYINTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VLK LG+++ + + +S L G + + G ++N
Sbjct: 108 LLLGLTDAGEGVAAKVLKSLGIELQTVRSRVMSIL-------GEDNRVVAGRQDN----- 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
P R + ++E+F +LT A + +DPV+GR+TEI+R +QIL RRTKNNP+L+G
Sbjct: 156 ------PRRNQNLSIEEFGRNLTKLAQQGRLDPVVGRQTEIERTVQILGRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV +VP LL+K+++SLDMGLL+AG + RG+ E R+ ++ EI
Sbjct: 210 EPGVGKTAIAEGLAQRIVNQDVPEILLNKQVISLDMGLLVAGTRFRGDFEERLKKVMEEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ G++IL IDE+HT++G+G G +G GLD +N+LKP+L RGELQCI +TT DE+R
Sbjct: 270 RSVGNIILVIDEIHTIVGAG----GTEG-GLDAANILKPALARGELQCIGATTLDEYRKY 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+L+ EPS + + IL GLR YE HH + +A+ AA LS RYIS
Sbjct: 325 IERDAALERRFQPILVGEPSVAETIEILGGLRSAYEQHHKVTISDDAVIAAAELSDRYIS 384
Query: 499 DRYLPDKAIDLVDEAGSRA---HIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAGSR H + K+ +Q L + + +R + + +
Sbjct: 385 DRFLPDKAIDLIDEAGSRVRLRHSRIIDNKELKQQ--LKNTSQEKAEAVR----VQDFGK 438
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
S+L+ +++ +++ + +LP + V +DIA + + W+G+PV ++T
Sbjct: 439 ASKLRQEELDLQ----TQLAIAQNLPKIT----IPQVDEEDIAEIVASWTGVPVNKLTES 490
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E LL+ LE+ L KR+IGQ++AV A+SR+++R+RVGLK PNRP A+ +F GPTGVGKTEL
Sbjct: 491 ESELLLHLEDTLHKRLIGQEQAVTAVSRSLRRARVGLKSPNRPIASFIFSGPTGVGKTEL 550
Query: 676 AKSLAACYFGS 686
AK+LA +FG+
Sbjct: 551 AKALATYFFGA 561
>gi|410454418|ref|ZP_11308357.1| Class III stress response-related ATPase, ClpC [Bacillus
bataviensis LMG 21833]
gi|409932233|gb|EKN69200.1| Class III stress response-related ATPase, ClpC [Bacillus
bataviensis LMG 21833]
Length = 813
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 265/612 (43%), Positives = 369/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLVREGEGIAAKALYGLGLGSDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ GK ++ + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVENLI--------------GKGQETSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G G + G
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGSNESGGHQ------------GGA 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+A+ +P L+ DLT+ A E +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 155 SASANTP------TLDGLARDLTSIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIVNNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH T EAI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIRVDEPTAEESIQILEGLRDRYEAHHRVSITDEAIQAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ E++ + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSY-----------TTPPNLKELEVKLDEVRKEKDSAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVES-----SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + E E V +DIA+V S W+G+PV ++
Sbjct: 433 SQEFEKAASLRDTEQRLREQLEETKKTWKEKQGKENNEVTVEDIASVVSSWTGVPVSKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L R+IGQ+EAV A+S+AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 ETETAKLLNLEEILHSRIIGQEEAVIAVSKAVRRARAGLKDPKRPIGSFVFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|312793061|ref|YP_004025984.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180201|gb|ADQ40371.1| ATPase AAA-2 domain protein [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 829
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 279/637 (43%), Positives = 383/637 (60%), Gaps = 65/637 (10%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITIDKAR 138
RFTERA KA++ +Q+ A LG + V T+HLLLGLI R G L+S G+T +K
Sbjct: 5 RFTERAEKAIMLAQQAAAELGHNYVGTEHLLLGLI---REGGGIAARVLQSQGVTEEKVI 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + ++ +G F+ TKRVFE A +R G ++I+ EH
Sbjct: 62 DEI------------EELIGRGDYQLPQPPTGFTPRTKRVFEIAFMEARRLGSSYISTEH 109
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L + + A R+L LGVD L + +L E AK ++ G
Sbjct: 110 ILLAIMREGESVAVRILMDLGVDPQRLFE-EIMKLLNEDAK--------------NVGGV 154
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ + +T+ + L QF DLT A E IDPVIGRE EI+R+IQIL RRTKNNP L+
Sbjct: 155 SPQQQINFQTQNTPTLNQFSRDLTQLALEGKIDPVIGREKEIERVIQILSRRTKNNPCLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI EGLA +IV+ VP L +KR+++LD+ ++AG+K RGE E R+ + E
Sbjct: 215 GEPGVGKTAIVEGLAQKIVEGNVPELLRNKRVVALDLSAMVAGSKFRGEFEERLKKAMEE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++K+G+VILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 275 VRKAGNVILFIDEMHTIIGAGAAE-----GAIDASNILKPALARGEIQVIGATTLDEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+L+ EP+ E+A++IL GLR+KYEAHH K T EAI AAV LS +YI
Sbjct: 330 HIEKDAALERRFQPILVGEPTPEEAIQILKGLRDKYEAHHGVKITDEAIKAAVELSTKYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DRYLPDKAIDL+DEA SR + ++ + PP E + + E +
Sbjct: 390 TDRYLPDKAIDLIDEAASRVRLRMY-----------TLPPHVKEFEEKIEKLEKEKEEAI 438
Query: 558 RLKYDDVVASMGDTSEIV-----VESSLPSASDDDEPA--VVGPDDIAAVASLWSGIPVQ 610
RL+ + A + D EI+ +E S ++D + +V DDIA + S W+GIPV
Sbjct: 439 RLQEYEKAAKIRD--EIMKLRQELEKIKNSWTNDQQKTQPIVTEDDIAYIVSSWTGIPVN 496
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T DE L+ LEE L +RV+GQDEAV A++RA++R RVGLKDP RP + +F GPTGV
Sbjct: 497 RLTEDESERLLKLEEVLHRRVVGQDEAVKAVARAIRRGRVGLKDPKRPIGSFIFLGPTGV 556
Query: 671 GKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GKTELA++LA FG+ +RI + FN K+
Sbjct: 557 GKTELARALAEALFGTEDAMIRIDMSEYMEKFNVSKL 593
>gi|384253876|gb|EIE27350.1| ATP-dependent Clp protease ATPase subunit [Coccomyxa subellipsoidea
C-169]
Length = 844
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 281/592 (47%), Positives = 382/592 (64%), Gaps = 43/592 (7%)
Query: 108 VFTQHLLLGLIAED-RHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSA 166
V T+ LL+GLI+E+ GF SGITID+AR AV ++ + D G SS
Sbjct: 6 VSTEFLLMGLISEEPASKTGFYNSGITIDRARTAVEALQERSRQAD-------GSSLSSP 58
Query: 167 A-KMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHL 225
A ++PFS KRVFE A E +R G+N+I+PEH+ L LF+V + A +V+++LG+
Sbjct: 59 APELPFSRDAKRVFETAAEEARKLGHNYISPEHVVLALFSVGNVGAKQVIEKLGLTDGGK 118
Query: 226 AAV--AVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTAR 283
A A RL+GE K R+ ++SGK K AL++FC DL +
Sbjct: 119 AIKDNARERLKGE--------GEVKEQRKKTVSGKEVTTK--------ALDEFCRDLCEQ 162
Query: 284 ASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVP-- 341
A ++ +DPVIGR+ E+ R++Q+L R+ KNNP+LLGE GVGKTAIAEGLA IV +P
Sbjct: 163 ARKKGMDPVIGRDKEVARVVQVLARKRKNNPVLLGEPGVGKTAIAEGLARAIVSGSLPDG 222
Query: 342 ----VFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS 397
FL KR+M+LD+GLL+AGAKERGELE+RVT +I+EI+ +G+++L IDEVH L+G+
Sbjct: 223 SALPAFLEGKRVMALDLGLLIAGAKERGELESRVTNIIAEIRAAGNIVLMIDEVHMLVGA 282
Query: 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEP 457
G+V R LDISNLLKP L RGELQCI +TT D+HR E+D AL RRFQPV ++EP
Sbjct: 283 GSVSRSGGSG-LDISNLLKPPLARGELQCIGATTLDDHRKYIERDAALERRFQPVHVAEP 341
Query: 458 SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517
+ +A++IL GL++ YE HH+C +T +A+ AAV LSARYI+DR LPDKAIDL+DEAGSRA
Sbjct: 342 TVTEALQILHGLQDSYEKHHHCLYTPDAVEAAVTLSARYIADRQLPDKAIDLLDEAGSRA 401
Query: 518 HIELFKRKKEQQTCILSKPPDDY---WQEIRTV-QAMHEVVQGSRLKYDDVVASMGDTSE 573
I +++ + +P D W E++ V +A E ++ + ++ +
Sbjct: 402 RIAAHVARRDALSG--GRPVADIVAPWLELQQVLEAKDEAIKEGLFEEAGLLRER-EVDM 458
Query: 574 IVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIG 633
V S LP + D+ AV S W+GIPVQ++T D+R L +E LK++VIG
Sbjct: 459 KVRLSGLPEEAPTVVTVTTA--DVEAVVSAWTGIPVQRMTQDDRERLSRMEPALKEKVIG 516
Query: 634 QDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685
Q +AV A++RA++R+R GLKDP RP AAMLF GPTGVGKTEL K LA YFG
Sbjct: 517 QADAVGAVARAMRRARSGLKDPARPIAAMLFAGPTGVGKTELTKVLADQYFG 568
>gi|344996728|ref|YP_004799071.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964947|gb|AEM74094.1| ATPase AAA-2 domain protein [Caldicellulosiruptor lactoaceticus 6A]
Length = 829
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 279/637 (43%), Positives = 383/637 (60%), Gaps = 65/637 (10%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITIDKAR 138
RFTERA KA++ +Q+ A LG + V T+HLLLGLI R G L+S G+T +K
Sbjct: 5 RFTERAEKAIMLAQQAAAELGHNYVGTEHLLLGLI---REGGGIAARVLQSQGVTEEKVI 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + ++ +G F+ TKRVFE A +R G ++I+ EH
Sbjct: 62 DEI------------EELIGRGDYQLPQPPTGFTPRTKRVFEIAFMEARRLGSSYISTEH 109
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L + + A R+L LGVD L + +L E AK ++ G
Sbjct: 110 ILLAIMREGESVAVRILMDLGVDPQRLFE-EIMKLLNEDAK--------------NVGGV 154
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ + +T+ + L QF DLT A E IDPVIGRE EI+R+IQIL RRTKNNP L+
Sbjct: 155 SPQQQINFQTQNTPTLNQFSRDLTQLALEGKIDPVIGREKEIERVIQILSRRTKNNPCLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI EGLA +IV+ VP L +KR+++LD+ ++AG+K RGE E R+ + E
Sbjct: 215 GEPGVGKTAIVEGLAQKIVEGNVPELLRNKRVVALDLSAMVAGSKFRGEFEERLKKAMEE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++K+G+VILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 275 VRKAGNVILFIDEMHTIIGAGAAE-----GAIDASNILKPALARGEIQVIGATTLDEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+L+ EP+ E+A++IL GLR+KYEAHH K T EAI AAV LS +YI
Sbjct: 330 HIEKDAALERRFQPILVGEPTPEEAIQILKGLRDKYEAHHGVKITDEAIKAAVELSTKYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DRYLPDKAIDL+DEA SR + ++ + PP E + + E +
Sbjct: 390 TDRYLPDKAIDLIDEAASRVRLRMY-----------TLPPHVKEFEEKIEKLEKEKEEAI 438
Query: 558 RLKYDDVVASMGDTSEIV-----VESSLPSASDDDEPA--VVGPDDIAAVASLWSGIPVQ 610
RL+ + A + D EI+ +E S ++D + +V DDIA + S W+GIPV
Sbjct: 439 RLQEYEKAAKIRD--EIMKLRQDLEKIKNSWTNDQQKTQPIVTEDDIAYIVSSWTGIPVN 496
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T DE L+ LEE L +RV+GQDEAV A++RA++R RVGLKDP RP + +F GPTGV
Sbjct: 497 RLTEDESERLLKLEEVLHRRVVGQDEAVKAVARAIRRGRVGLKDPKRPIGSFIFLGPTGV 556
Query: 671 GKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GKTELA++LA FG+ +RI + FN K+
Sbjct: 557 GKTELARALAEALFGTEDAMIRIDMSEYMEKFNVSKL 593
>gi|205372096|ref|ZP_03224913.1| class III stress response-related ATPase [Bacillus coahuilensis
m4-4]
Length = 816
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 273/614 (44%), Positives = 372/614 (60%), Gaps = 60/614 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA L + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLSHSNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ S+ + GK + + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LYALGLSSEKIQKEVETLIGKGKETTQNIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G E S +G G A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG-----SSESSSHQG-------GGNA 156
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 157 GANTP------TLDSLARDLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+Q EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIIQNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ +++++IL GLR++YEAHH T AI AAV LS RYISDR
Sbjct: 326 KDAALERRFQPIQVDEPTVDESIQILQGLRDRYEAHHRVSITDAAIQAAVKLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQGS 557
+LPDKAIDL+DEAGS+ + + + PP+ + Q + TV+ + VQ
Sbjct: 386 FLPDKAIDLIDEAGSKVRLRSY-----------TTPPNLKELEQRLETVRKEKDAAVQSQ 434
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPVQQ 611
+ AS+ DT + + E L S + E V DDIA V S+W+G+PV +
Sbjct: 435 EFEK---AASLRDTEQKLRE-ELDSTKNTWKEKQGQENTEVTVDDIAHVVSVWTGVPVSK 490
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
I E L+ LE L RVIGQ+EAV A+S+AV+R+R GLKDP RP + +F GPTGVG
Sbjct: 491 IAQTETDKLLNLESILHSRVIGQEEAVKAVSKAVRRARAGLKDPKRPIGSFIFLGPTGVG 550
Query: 672 KTELAKSLAACYFG 685
KTELA++LA FG
Sbjct: 551 KTELARALAEAMFG 564
>gi|222529809|ref|YP_002573691.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor bescii
DSM 6725]
gi|222456656|gb|ACM60918.1| ATPase AAA-2 domain protein [Caldicellulosiruptor bescii DSM 6725]
Length = 829
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 279/637 (43%), Positives = 383/637 (60%), Gaps = 65/637 (10%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITIDKAR 138
RFTERA KA++ +Q+ A LG + V T+HLLLGLI R G L+S G+T +K
Sbjct: 5 RFTERAEKAIMLAQQAAAELGHNYVGTEHLLLGLI---REGGGIAARVLQSQGVTEEKVI 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + ++ +G F+ TKRVFE A +R G ++I+ EH
Sbjct: 62 DEI------------EELIGRGDYQLPQPPTGFTPRTKRVFEIAFMEARRLGSSYISTEH 109
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L + + A R+L LGVD L + +L E AK ++ G
Sbjct: 110 ILLAIMREGESVAVRILMDLGVDPQRLFE-EIMKLLNEDAK--------------NVGGV 154
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ + +T+ + L QF DLT A E IDPVIGRE EI+R+IQIL RRTKNNP L+
Sbjct: 155 SPQQQINFQTQNTPTLNQFSRDLTQLALEGKIDPVIGREKEIERVIQILSRRTKNNPCLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI EGLA +IV+ VP L +KR+++LD+ ++AG+K RGE E R+ + E
Sbjct: 215 GEPGVGKTAIVEGLAQKIVEGNVPELLRNKRVVALDLSAMVAGSKFRGEFEERLKKAMEE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++K+G+VILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 275 VRKAGNVILFIDEMHTIIGAGAAE-----GAIDASNILKPALARGEIQVIGATTLDEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+L+ EP+ E+A++IL GLR+KYEAHH K T EAI AAV LS +YI
Sbjct: 330 HIEKDAALERRFQPILVGEPTPEEAIQILKGLRDKYEAHHGVKITDEAIKAAVELSTKYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DRYLPDKAIDL+DEA SR + ++ + PP E + + E +
Sbjct: 390 TDRYLPDKAIDLIDEAASRVRLRMY-----------TLPPHVKEFEEKIEKLEKEKEEAI 438
Query: 558 RLKYDDVVASMGDTSEIV-----VESSLPSASDDDEPA--VVGPDDIAAVASLWSGIPVQ 610
RL+ + A + D EI+ +E S ++D + +V DDIA + S W+GIPV
Sbjct: 439 RLQEYEKAAKIRD--EIMKLRQELEKIKNSWTNDQQKTQPIVTEDDIAYIVSSWTGIPVN 496
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T DE L+ LEE L +RV+GQDEAV A++RA++R RVGLKDP RP + +F GPTGV
Sbjct: 497 KLTEDESERLLKLEEVLHRRVVGQDEAVKAVARAIRRGRVGLKDPKRPIGSFIFLGPTGV 556
Query: 671 GKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GKTELA++LA FG+ +RI + FN K+
Sbjct: 557 GKTELARALAEALFGTEDAMIRIDMSEYMEKFNVSKL 593
>gi|357149201|ref|XP_003575034.1| PREDICTED: chaperone protein ClpC1, chloroplastic-like
[Brachypodium distachyon]
Length = 879
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 271/620 (43%), Positives = 381/620 (61%), Gaps = 55/620 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 45 VRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 104
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 105 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 151
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D N++ V R+ GE ++
Sbjct: 152 SEHLLLGLLREGEGVAARVLESLGADPNNIRT-QVIRMVGE----------------STE 194
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP
Sbjct: 195 AVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQDQIERVTQILGRRTKNNPC 254
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 255 LIGEPGVGKTAIAEGLAQRITNGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 314
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI++S D+ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 315 EEIKQSDDIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEY 369
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T +A+ AA LS +
Sbjct: 370 RKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHKLRYTDDALTAAAKLSYQ 429
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVV 554
YISDR+LPDKAIDL+DEAGSR + + L + +E+R V + +E V
Sbjct: 430 YISDRFLPDKAIDLIDEAGSRVRL---------RHAQLPDEAKELDKELRKVTKDKNEAV 480
Query: 555 QGSRL----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSG 606
+G + D + +++ S + E VGP DI + S W+G
Sbjct: 481 RGQDFEKAGELRDKEMELKAQITAIIDKSKEMVKAETESGEVGPLVTEADIQHIVSSWTG 540
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV+++++DE L+ +EE L +R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F G
Sbjct: 541 IPVEKVSSDESDRLLKMEETLHQRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 600
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGK+ELAK+LA+ YFGS
Sbjct: 601 PTGVGKSELAKALASYYFGS 620
>gi|312621967|ref|YP_004023580.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202434|gb|ADQ45761.1| ATPase AAA-2 domain protein [Caldicellulosiruptor kronotskyensis
2002]
Length = 829
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 279/637 (43%), Positives = 383/637 (60%), Gaps = 65/637 (10%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITIDKAR 138
RFTERA KA++ +Q+ A LG + V T+HLLLGLI R G L+S G+T +K
Sbjct: 5 RFTERAEKAIMLAQQAAAELGHNYVGTEHLLLGLI---REGGGIAARVLQSQGVTEEKVI 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + ++ +G F+ TKRVFE A +R G ++I+ EH
Sbjct: 62 DEI------------EELIGRGDYQLPQPPTGFTPRTKRVFEIAFMEARRLGSSYISTEH 109
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L + + A R+L LGVD L + +L E AK ++ G
Sbjct: 110 ILLAIMREGESVAVRILMDLGVDPQRLFE-EIMKLLNEDAK--------------NVGGV 154
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ + +T+ + L QF DLT A E IDPVIGRE EI+R+IQIL RRTKNNP L+
Sbjct: 155 SPQQQINFQTQNTPTLNQFSRDLTQLALEGKIDPVIGREKEIERVIQILSRRTKNNPCLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI EGLA +IV+ VP L +KR+++LD+ ++AG+K RGE E R+ + E
Sbjct: 215 GEPGVGKTAIVEGLAQKIVEGNVPELLRNKRVVALDLSAMVAGSKFRGEFEERLKKAMEE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++K+G+VILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 275 VRKAGNVILFIDEMHTIIGAGAAE-----GAIDASNILKPALARGEIQVIGATTLDEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+L+ EP+ E+A++IL GLR+KYEAHH K T EAI AAV LS +YI
Sbjct: 330 HIEKDAALERRFQPILVGEPTPEEAIQILKGLRDKYEAHHGVKITDEAIKAAVELSTKYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DRYLPDKAIDL+DEA SR + ++ + PP E + + E +
Sbjct: 390 TDRYLPDKAIDLIDEAASRVRLRMY-----------TLPPHVKEFEEKIEKLEKEKEEAI 438
Query: 558 RLKYDDVVASMGDTSEIV-----VESSLPSASDDDEPA--VVGPDDIAAVASLWSGIPVQ 610
RL+ + A + D EI+ +E S ++D + +V DDIA + S W+GIPV
Sbjct: 439 RLQEYEKAAKIRD--EIMKLRQELEKIKNSWTNDQQKTQPIVTEDDIAYIVSSWTGIPVN 496
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T DE L+ LEE L +RV+GQDEAV A++RA++R RVGLKDP RP + +F GPTGV
Sbjct: 497 KLTEDESERLLKLEEVLHRRVVGQDEAVKAVARAIRRGRVGLKDPKRPIGSFIFLGPTGV 556
Query: 671 GKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GKTELA++LA FG+ +RI + FN K+
Sbjct: 557 GKTELARALAEALFGTEDAMIRIDMSEYMEKFNVSKL 593
>gi|357012846|ref|ZP_09077845.1| ClpC [Paenibacillus elgii B69]
Length = 814
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 265/612 (43%), Positives = 369/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLSLAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALIALGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVESLI--------------GRGQEQPSNIAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G + E P+
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG--SSEVVSPNHG----------- 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 154 -----NPTNVNTPTLDGLARDLTAYAKEGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQKIVANEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+++LFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIVLFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+A++IL GLR++YEAHH K T EAI AV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPSPEEAIQILHGLRDRYEAHHRVKITDEAIEQAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + + + PPD E R E +
Sbjct: 384 DRFLPDKAIDLIDEASSKVRLRSY-----------TVPPDLKKLESRLDDIRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + E + ++ E + V PDDIA V + W+GIPV ++
Sbjct: 433 SQEFEKAASLRDTEQKLREELDSTKNEWKEKQGRTDSEVTPDDIAQVVASWTGIPVVKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E+ L RVIGQDEAV A+SRA++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETQRLLKMEDILHDRVIGQDEAVKAVSRAIRRARAGLKDPKRPMGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESLFG 564
>gi|258512699|ref|YP_003186133.1| ATPase AAA-2 domain-containing protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257479425|gb|ACV59744.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 812
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 267/617 (43%), Positives = 375/617 (60%), Gaps = 65/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
++ RFTERA K + +Q EA +L V T+H+LLGLI R G + +
Sbjct: 2 MYARFTERAQKVLALAQEEASNLNHPGVGTEHILLGLI---REGEGIAAKALQM------ 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + Q+ + +G+ +A M ++ K+V E +++ +R G++++ EH+
Sbjct: 53 -LGVQADKVQQEIERMVGRGQTPVTA--MTYTPRAKKVIELSIDEARKLGHSYVGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG-KT 259
LGL +G A RVL + V++N + L G+ I+G K
Sbjct: 110 LGLIREGEGVAARVLANMNVNLNKARQQVLQLLGGDAM---------------DIAGDKD 154
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A++ +P L+ DLT A + +DPVIGRE EI+R+IQ+L RRTKNNP+L+GE
Sbjct: 155 ASVGTP------TLDSLARDLTQMARDGKLDPVIGREKEIERVIQVLSRRTKNNPVLIGE 208
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA RIV +VP L +KR+M LDMG ++AG K RGE E R+ ++ EI+
Sbjct: 209 PGVGKTAIAEGLAQRIVTGDVPETLRNKRVMVLDMGTVVAGTKYRGEFEDRLKKIMDEIR 268
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++G+VILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 QAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKHI 323
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+++ EPS E+A+ IL GLR++YEAHH K T EA+ AAV LS RYISD
Sbjct: 324 EKDPALERRFQPIMVDEPSPEEALEILKGLRDRYEAHHRVKITDEALEAAVKLSDRYISD 383
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQG 556
R+LPDKAIDL+DEA SR + + PP+ + Q++ V++ + VQ
Sbjct: 384 RFLPDKAIDLIDEAASRVRLRTH-----------TAPPNLKELEQKLEKVRSEKDAAVQS 432
Query: 557 SRLKYDDVVASMGDTS-------EIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
++ AS+ D E + E+ + DD V +DIA + S W+GIPV
Sbjct: 433 QEF---ELAASLRDEEQKIKEELERLKETWQKTQQLDD--VRVTAEDIAHIVSSWTGIPV 487
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
QQ+ DE L+ LE+ L +RVIGQDEAV A+++A++R+R GLKDP RP + +F GPTG
Sbjct: 488 QQLQQDESERLLNLEKILHERVIGQDEAVEAVAKAIRRARAGLKDPKRPIGSFIFLGPTG 547
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELA++LA FG
Sbjct: 548 VGKTELARALAEALFGD 564
>gi|449440498|ref|XP_004138021.1| PREDICTED: chaperone protein ClpC, chloroplastic-like [Cucumis
sativus]
Length = 929
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 282/660 (42%), Positives = 406/660 (61%), Gaps = 52/660 (7%)
Query: 37 MSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRR--KIIPISSVFERFTERAVKAVI 94
+ F ++ + Q FHS + I +R+R+ + +P ++FERFTE+A+K ++
Sbjct: 53 LRGFNSLDNMLRSRQNFHSKVAT------AISSRRRKASRCVP-RAMFERFTEKAIKVIM 105
Query: 95 FSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHSTNNQD 152
+Q EA+ LG + V T+ +LLGLI E L+S GI + AR V I
Sbjct: 106 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII------- 158
Query: 153 TDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAG 212
+G F A ++PF+ KRV E ++E +R G+N+I EH+ LGL +G A
Sbjct: 159 -----GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAA 212
Query: 213 RVLKRLG-VDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRAS 271
RVL+ LG + + +L +S+ + + V E++ + +
Sbjct: 213 RVLENLGKLFIFNLMFYKLSK------------QVIRMVGESTEAVGAGVGGGSSGNKMP 260
Query: 272 ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGL 331
LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+GE GVGKTAIAEGL
Sbjct: 261 TLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGL 320
Query: 332 AIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391
A RI +VP + K++++LDMGLL+AG K RGE E R+ L+ EI++S ++ILFIDEV
Sbjct: 321 AQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEV 380
Query: 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQP 451
HTLIG+G +D +N+LKP+L RGELQCI +TT DE+R EKD AL RRFQP
Sbjct: 381 HTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQP 435
Query: 452 VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511
V + EPS ++ ++IL GLRE+YE HH ++T EA+ AA LS +YISDR+LPDKAIDLVD
Sbjct: 436 VKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVD 495
Query: 512 EAGSRA---HIELFK--RKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVA 566
EAGSR H +L + R+ E++ ++K ++ + +A ++ ++ ++
Sbjct: 496 EAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGE--LRDREMELKTKIS 553
Query: 567 SMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQ 626
++ D + E S + D VV DI + S W+GIPV++++ DE L+ +EE
Sbjct: 554 ALVDKGK---EMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEET 610
Query: 627 LKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
L KRVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+LAA YFGS
Sbjct: 611 LHKRVIGQDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS 670
>gi|421858335|ref|ZP_16290606.1| ATPase [Paenibacillus popilliae ATCC 14706]
gi|410832093|dbj|GAC41043.1| ATPase [Paenibacillus popilliae ATCC 14706]
Length = 812
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 265/621 (42%), Positives = 374/621 (60%), Gaps = 74/621 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALVALGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVESLIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G + V +S +G+
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLGS----------TEAV--SSHNGQ 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ + +P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 155 SQNVSTP------TLDGLARDLTATAKEGNLDPVIGRTKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA +I+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAVAEGLAQKIINNEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +P+ E+ ++IL GLR++YEAHH K + EAI+ AV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPTIEETIQILKGLRDRYEAHHRVKISDEAIDQAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHI----------ELFKR----KKEQQTCILSKPPDDYWQEI 544
DR+LPDKAIDL+DEAGS+ + EL R +KE+ + S QE
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLNSYTVPPNLKELEARLEDIRKEKDASVQS-------QEF 436
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW 604
A+ + Q R + D V + D E V P+DIA + S W
Sbjct: 437 EKAAALRDTEQKMREELDSVRNQWKE----------KQGRMDSE---VTPEDIAQIVSSW 483
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+G+PV ++ +E L+ +EE L +RVIGQDEAV A+SRA++R+R GLKDP RP + +F
Sbjct: 484 TGVPVVKLKEEETQRLLNMEEVLHERVIGQDEAVKAVSRAIRRARAGLKDPKRPMGSFIF 543
Query: 665 CGPTGVGKTELAKSLAACYFG 685
GPTGVGKTELA++LA FG
Sbjct: 544 LGPTGVGKTELARALAESLFG 564
>gi|296131785|ref|YP_003639032.1| ATPase AAA [Thermincola potens JR]
gi|296030363|gb|ADG81131.1| ATPase AAA-2 domain protein [Thermincola potens JR]
Length = 810
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/610 (43%), Positives = 359/610 (58%), Gaps = 48/610 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K ++ +Q EAK L V T+H+LLGLI E E G+ +K R
Sbjct: 1 MFARFTERAQKVLMLAQEEAKRLNYTYVGTEHILLGLIQEGSGIAAKVLYELGVDFNKVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V + +G+ F + ++ + K+V E A + +R G+N+I EH
Sbjct: 61 SEV------------EKMIGKGE-FYTFGEIGLTPRAKKVLELAFDEARKLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL LGVD + ++ L G P+
Sbjct: 108 LLLGLIREGEGVAARVLHNLGVDFQSVQKSVINMLGTAQPHGG--PA------------- 152
Query: 259 TAALKSPGRTRASA--LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
PG+ +A+ L +F DLT A E +DPV+GRE EI+R++Q+L RRTKNNP+L
Sbjct: 153 -----QPGKKQANTPTLNEFGRDLTEMAREGKLDPVVGREKEIERVVQVLSRRTKNNPVL 207
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA RI+ VP L KR+++LDM ++AG K RGE E R+ +I
Sbjct: 208 IGEPGVGKTAIAEGLAQRIIAGNVPETLNDKRVVTLDMASVVAGTKFRGEFEDRLKKVID 267
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ +G+VILFIDE+HTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 268 EIRAAGNVILFIDELHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYR 322
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
E+D AL RRFQP+ + EP+ E+++ IL GLR++YEAHH + T EAIN+AV LS RY
Sbjct: 323 KHIERDPALERRFQPITVDEPTVEESIDILKGLRDRYEAHHRVQITDEAINSAVRLSDRY 382
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQG 556
I+DR+LPDKAIDL+DEA SR ++ F + + +E E G
Sbjct: 383 ITDRFLPDKAIDLIDEAASRVRLQTFTVPPDVKKLEAELEEIKKEKEAAISAQEFEKAAG 442
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
R K + A + DT + E + V DDIA + S W+GIPV ++ +E
Sbjct: 443 LRDKEQKLKAKLEDTKKGWEEKKGLAKK------AVTEDDIAHIVSSWTGIPVSKLAQEE 496
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ +EE L +RVIGQDEAV A+SRAV+R+R GLKDP RP + +F GPTGVGKTELA
Sbjct: 497 TTRLLNMEEILHQRVIGQDEAVKAVSRAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 556
Query: 677 KSLAACYFGS 686
++LA FG
Sbjct: 557 RALAEALFGD 566
>gi|71842249|ref|YP_277337.1| Clp protease ATP binding subunit [Emiliania huxleyi]
gi|52547750|gb|AAU81910.1| Clp protease ATP binding subunit [Emiliania huxleyi]
gi|60101492|gb|AAX13836.1| Clp protease ATP binding subunit [Emiliania huxleyi]
gi|336286162|gb|AEI29498.1| Clp protease ATP binding subunit [Emiliania huxleyi]
Length = 817
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/617 (42%), Positives = 374/617 (60%), Gaps = 62/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E P G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIGPKILKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KR+ E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRILELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ L VD++ + + + L G +A G NS
Sbjct: 108 LLLGLIREGEGVAARVLENLEVDLSKVRSQIIRSL-------GESTDVAAG---NS---- 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S R++ LE+F +LT +A+E +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 -----STTRSKTPTLEEFGTNLTQKATEGRLDPVVGRSKEIERVIQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ ++ E+
Sbjct: 209 EPGVGKTAVAEGLAQRIANRDVPDTLEDKRVVALDIGLLIAGTKYRGEFEERLKKIMDEV 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + ++IL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT +E+R
Sbjct: 269 RTANNIILVIDEVHTLIGAGAA-----EGAIDAANILKPALSRGELQCIGATTIEEYRKH 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EP+ E+ + IL GLR++YE HH + EA+ AA + +YI+
Sbjct: 324 IEKDAALERRFQPVMVGEPTVEETIEILYGLRDRYERHHKLVISDEALAAAAKFADQYIA 383
Query: 499 DRYLPDKAIDLVDEAGSRAHI---------ELFKRKKEQQTCILSKPPDDYWQEIRTVQA 549
DR+LPDKAIDL+DEAGSR + +L +E + + SK Q+
Sbjct: 384 DRFLPDKAIDLIDEAGSRVRLLNSQLPPAAKLL--DQELRDVLKSKDEAVRNQDFEKAGQ 441
Query: 550 MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ E R + + V+ D S SS+P+ + V +DIA + + W+ IPV
Sbjct: 442 LREREMEVRAQINAVIQVSKDPS-----SSVPTPT-------VTEEDIAQIVAAWTSIPV 489
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ LF GPTG
Sbjct: 490 NKLTKSESEKLLQMEETLHSRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFLFSGPTG 549
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL K+LA +FGS
Sbjct: 550 VGKTELTKALATYFFGS 566
>gi|307150870|ref|YP_003886254.1| ATPase AAA-2 domain-containing protein [Cyanothece sp. PCC 7822]
gi|306981098|gb|ADN12979.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 7822]
Length = 790
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 261/627 (41%), Positives = 376/627 (59%), Gaps = 77/627 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FE F+++AVKA++F+Q EA+ G ++V T+HLLLG+I E E+ I R+
Sbjct: 1 MFEHFSDKAVKAIMFAQEEARRTGHNVVGTEHLLLGVIGE--------ETSIAATVLRDL 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+++ + + ++ +G P S A +PF+ KR+FEAA + +R G I+P H+
Sbjct: 53 GINLPQT--RRTIENITGRG-PGYSPANIPFTPKVKRIFEAAFQEARQLGNRVISPVHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L + + + A +VL + GVD+ L ++R ++A P+
Sbjct: 110 LAISSDQESLAAKVLTQQGVDLKVLRTELINR-NAQMAAASVTPT------------DEP 156
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ G +R+ +L +F +LT A+E IDPV+GR E++R IQIL RRTKNNP+L+GE
Sbjct: 157 NRFAMGNSRSFSLAEFGSNLTQLAAEGKIDPVVGRHREVERTIQILGRRTKNNPVLVGEP 216
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RIV EVP L K++ SLD+GLL+AG + RGE E R+ +++ E++
Sbjct: 217 GVGKTAIAEGLAQRIVSREVPELLQDKQVFSLDLGLLLAGTRFRGEFEERLKSIVEEVRA 276
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ ++IL IDE+HTL+G+G + G LD +N++KP+L RGELQC+ +TT +E+R E
Sbjct: 277 AKNIILVIDEIHTLVGAGAL-----GGSLDAANMIKPALARGELQCLGTTTLNEYRQYIE 331
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV++ EP+ E+ + IL GLR+ YE H KF+ EA+ AA LS RYISDR
Sbjct: 332 KDAALERRFQPVMVGEPTVEETIEILQGLRKSYEDFHKVKFSDEALVAAAKLSDRYISDR 391
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGSR ++ KK P+ +E
Sbjct: 392 FLPDKAIDLIDEAGSRMRVQYSHNKKTH--------PEKQLEE----------------- 426
Query: 561 YDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLL 620
S I+ SL D++E IA + S W+G+PV +++ E L
Sbjct: 427 -----------STIINPDSLVPVVDEEE--------IAEIVSSWTGVPVNKVSETESESL 467
Query: 621 VGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
+ LE +L +R+IGQDEAV A+SRAV+R+RVG+KDPNRP A+ +F GPTGVGKTELAK+LA
Sbjct: 468 IYLEARLHERIIGQDEAVKAVSRAVRRARVGMKDPNRPIASFIFAGPTGVGKTELAKALA 527
Query: 681 ACYFGS----VRIHYLFFPSPFNSVKV 703
FGS +R+ F P K+
Sbjct: 528 TFLFGSADAMIRLDMSEFMEPHTVSKL 554
>gi|456062009|ref|YP_007476253.1| Clp protease ATP binding subunit (chloroplast) [Pavlova lutheri]
gi|449327196|gb|AGE93752.1| Clp protease ATP binding subunit (chloroplast) [Pavlova lutheri]
Length = 845
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 263/616 (42%), Positives = 375/616 (60%), Gaps = 52/616 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFTE+A+K ++ +Q E++ LG + V T+ +LLGLI E L S G+T+ AR
Sbjct: 1 MFERFTEKAIKVIMLAQEESRRLGHNFVGTEQILLGLIGEGTGLAFKVLNSMGVTLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V + +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 IEV------------EKVIGRGTGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL ++G A RVL+ LGV V +S+L+ ++ + + G E G
Sbjct: 108 LLLGLIRENEGVATRVLENLGV-------VFLSKLRTQVIR-------SLGETEEVFVGS 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ + GR +A LE+F DLT +A +DPVIGRE EI+R+IQIL RRTKNNPIL+G
Sbjct: 154 NS--QGQGRNKAPTLEEFGTDLTEKAEAGTLDPVIGREKEIERVIQILGRRTKNNPILIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKT+IAEGLA RI+ +VP L K +++LD+GLL+AG K RGE E R+ ++ E+
Sbjct: 212 EPGVGKTSIAEGLAQRIIAKDVPDILEDKSVVTLDIGLLVAGTKYRGEFEERLKKIMEEV 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + ++IL IDEVHTL+G+G +D +N+LKP+L RGELQCI +TT +E+R
Sbjct: 272 RVNSEIILVIDEVHTLVGAGAA-----EGAIDAANILKPALARGELQCIGATTLEEYRKH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EPS ++ + IL GLRE+YE HH EAI AA L+ +YI+
Sbjct: 327 IEKDAALERRFQPVMVGEPSVDETIEILYGLRERYEKHHKLVIRDEAICAAATLADQYIA 386
Query: 499 DRYLPDKAIDLVDEAGSRAHI--ELF-----KRKKEQQTCILSKPPDDYWQEIRTVQAMH 551
DR+LPDKAIDL+DE SR + L + KE + I K Q+ +
Sbjct: 387 DRFLPDKAIDLIDEGSSRVRLLNSLLPPAAKQLDKELRKIIKEKDEAVRSQDFEKAGELR 446
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
E ++ + V + G+ + + V D+IA + + W+GIPV +
Sbjct: 447 ERELETKTQIALVGRNKGEGGRF---------AKNKGELFVSEDNIAEIVASWTGIPVNK 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
++ E L+ +E+ L R+IGQ+EAV AISRA++R+RVGLK+PNRP A+ +F GPTGVG
Sbjct: 498 LSKSESEKLMNMEKTLHGRIIGQNEAVVAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 557
Query: 672 KTELAKSLAACYFGSV 687
KTEL K+LA+ +FGSV
Sbjct: 558 KTELTKALASYFFGSV 573
>gi|108804998|ref|YP_644935.1| ATPase [Rubrobacter xylanophilus DSM 9941]
gi|108766241|gb|ABG05123.1| ATPase AAA-2 [Rubrobacter xylanophilus DSM 9941]
Length = 834
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 261/618 (42%), Positives = 366/618 (59%), Gaps = 56/618 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFTERA K V+ +Q EA+ + + T+HLLLGL+ E+ G+T+D R
Sbjct: 1 MFERFTERARKVVVLAQEEARHFNHNYIGTEHLLLGLLREEDGVAAQALNHLGVTLDDVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V SI S ++ PF+ +K+V E A+ + G+N+I EH
Sbjct: 61 EQVESIVGYGEE-------------GSGSQAPFTPRSKKVLELALREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL L VD + + V RL G + GR + A+G + GK
Sbjct: 108 ILLGLVRESEGVAARVLSNLDVDPDKVRREVVRRLGGGRTQRGRAEASARG----GVEGK 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
R + L+Q+ +LTA A E +DPVIGR EI+RI+QIL RRTKNNP+++G
Sbjct: 164 --------RPKTRQLDQYGRNLTALAEEGKLDPVIGRTQEIERIMQILVRRTKNNPVIIG 215
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAI EGLA I VP L K + +LD+G L+AG+K RGE E R+ ++ EI
Sbjct: 216 EPGVGKTAIVEGLANEIAAGRVPEILADKEVYTLDLGALVAGSKYRGEFEERLKKIMKEI 275
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+H L+G+G +D +++LKP+L RGE+Q I +TT DE+R
Sbjct: 276 IDHGDIILFIDEIHNLVGAGAA-----EGAIDAASILKPALARGEIQVIGATTIDEYRKY 330
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKDKAL RRFQ + + EP+ E+ IL GLRE+YE HH + T EA+ AA L RYIS
Sbjct: 331 VEKDKALERRFQTIQVGEPTVEETELILKGLRERYEEHHKIEITDEALRAASRLGDRYIS 390
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAM--- 550
DR+LPDKAIDLVDEA S+ I+ +S+PP DD E+R +
Sbjct: 391 DRFLPDKAIDLVDEAASKMKIK-----------TMSQPPYYKEIDDELAEVRRRKEAAID 439
Query: 551 -HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAV-VGPDDIAAVASLWSGIP 608
E + +RL+ + ++ +E +++ V +G ++IA + S+W+GIP
Sbjct: 440 SQEYEEAARLRDSEKKLALRKRE---LERQWREGKGEEQRRVSIGENEIAEIVSMWTGIP 496
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V+++T +E L+ +EE L RV+GQDEA+ A+SR+++R+ GLKDPNRP+ + +F GPT
Sbjct: 497 VRKLTEEESARLLKMEEALHGRVVGQDEAIKAVSRSIRRTMAGLKDPNRPSGSFVFLGPT 556
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELA++LA FG
Sbjct: 557 GVGKTELARTLAEYLFGD 574
>gi|407474767|ref|YP_006789167.1| chaperone protein ClpB [Clostridium acidurici 9a]
gi|407051275|gb|AFS79320.1| chaperone protein ClpB [Clostridium acidurici 9a]
Length = 818
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 266/614 (43%), Positives = 366/614 (59%), Gaps = 55/614 (8%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKA 137
+ F RFTERA + V +Q EA+ L + + T+H+LLGL+AE N + GI +D
Sbjct: 2 ATFGRFTERAQRVVYLAQEEAERLNHNYIGTEHILLGLVAEGEGIAANALINIGIDLDDL 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V+ +A +GK + F+ TK+VFE + E +R+ G N+I E
Sbjct: 62 RAQVI------------EAVGEGKEIVKV--LGFTPRTKKVFELSFEEARTFGQNYIGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A +L+ G+D+ +S L K S + N+
Sbjct: 108 HLLLGLIKEGEGVAAAILRNSGIDLETARKEVISMLNQNYGKGNSNNS-----QYNANLN 162
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
KT L GR DLT A+E IDPVIGR EI+R+IQ+L RRTKNNP L+
Sbjct: 163 KTPTLDEYGR-----------DLTVLANEGKIDPVIGRSKEIERVIQVLSRRTKNNPCLI 211
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA +IV EVP L KR+++LD+ ++AGAK RGE E R+ ++ E
Sbjct: 212 GEPGVGKTAIAEGLAQKIVSGEVPELLKDKRVVTLDLPSMVAGAKYRGEFEERLKKVMEE 271
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+ ++ +VILFIDE+HT+IG+G +G+ +D SN+LKP+L RGELQ I +TT DE+R
Sbjct: 272 LIETKNVILFIDEMHTIIGAGAA----EGS-IDASNILKPALARGELQTIGATTIDEYRK 326
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV++ EPS ED ++IL GLR++YEAHH + EA+ AAV LS+RYI
Sbjct: 327 YIEKDPALERRFQPVMVEEPSVEDTIKILEGLRDRYEAHHRVNISDEALKAAVELSSRYI 386
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DRYLPDKAIDL+DEA SR ++ ++ PP+ E + + HE +
Sbjct: 387 TDRYLPDKAIDLIDEAASRIRLKS-----------VTPPPELNELEGKLEELNHEKEEAI 435
Query: 558 RLKYDDVVASMGDTSEIVVE------SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + A + D + + E E VV +DIA V S W+GIPV++
Sbjct: 436 NTQDYEKAAKIRDEEKSIKEQLEKRQEEWNQTKHTSEKEVV-YEDIAHVVSTWTGIPVKK 494
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
++ +E L+ LEE L K+VIGQD+AV +++ AV+R+RVGLKDPN+P +F GPTGVG
Sbjct: 495 MSMEESERLLNLEEILHKKVIGQDQAVKSLASAVRRARVGLKDPNKPIGTFIFVGPTGVG 554
Query: 672 KTELAKSLAACYFG 685
KT L KSLA FG
Sbjct: 555 KTYLTKSLAEALFG 568
>gi|442803766|ref|YP_007371915.1| chaperone protein ClpB [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442739616|gb|AGC67305.1| chaperone protein ClpB [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 810
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 267/617 (43%), Positives = 364/617 (58%), Gaps = 62/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
++ RFT+RA +A+ ++ + SLG + + T+H+L GL+ E N + +G+T D+
Sbjct: 2 IYGRFTQRAAQALNLARECSNSLGHNYIGTEHILWGLVKEGGGIAANVLISNGVTADRVL 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E ++SI G+ S ++ TKRV E A +R G NFI EH
Sbjct: 62 EKILSIV--------------GRGDGSLPITGYTPRTKRVMELAYAETRRMGQNFIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L + + A R+L LGVD+N L ++ LQ E++ +
Sbjct: 108 IMLAILREGESVAVRILMELGVDINKLYDSLITMLQ-----------------EDTPAAV 150
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A + L+QF DLTA A E IDPVIGR+ EI+RIIQIL RRTKNNP L+G
Sbjct: 151 VANKPRAEEIQTPTLDQFGRDLTAMAREGKIDPVIGRDKEIERIIQILSRRTKNNPCLIG 210
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAI EGLA +I++ +P L KR+++LD+ ++AGAK RGE E R+ I E+
Sbjct: 211 EPGVGKTAICEGLAQKIIEGNIPEILKGKRVVALDLSSMVAGAKYRGEFEERLKKSIEEV 270
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VILFIDE+HT++G+G +D SN+LKP L RGE+Q I +TT DE+R
Sbjct: 271 RNAGNVILFIDELHTIVGAGAA-----EGAIDASNILKPLLARGEIQVIGATTIDEYRKY 325
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ I EP+QE+A+ IL G+R+KYEAHHN K T +AI AAV LS RYI+
Sbjct: 326 IEKDAALERRFQPIQIGEPTQEEAIEILKGIRDKYEAHHNVKITDKAIEAAVRLSVRYIT 385
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE--VV 554
DR+LPDKAIDL+DEA S+ ++ F PPD + Q+I V M E ++
Sbjct: 386 DRFLPDKAIDLIDEAASKVRLKSF-----------IAPPDLKELEQKIEQVHKMKEDAII 434
Query: 555 QGSRLKYDDVVASMGDTSEIVVE--SSLPSA---SDDDEPAVVGPDDIAAVASLWSGIPV 609
K AS+ D + E +SL + E V ++IA V S W+GIPV
Sbjct: 435 NQEFEK----AASLRDQENALKEQMNSLKEKWRMKNQTETQSVTEEEIAEVVSSWTGIPV 490
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++ +E L LE L KRVIGQDEAV A+++A++R RVGLKDP RP + +F GPTG
Sbjct: 491 SRLAQEETEKLKNLENVLHKRVIGQDEAVKAVAKAIRRGRVGLKDPKRPVGSFIFLGPTG 550
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 551 VGKTELSKALAEALFGD 567
>gi|218290044|ref|ZP_03494211.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
gi|218239878|gb|EED07066.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
Length = 812
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 267/617 (43%), Positives = 374/617 (60%), Gaps = 65/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
++ RFTERA K + +Q EA L V T+H+LLGLI R G + +
Sbjct: 2 MYARFTERAQKVLALAQEEASRLNHPGVGTEHILLGLI---REGEGIAAKALQM------ 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + Q+ + +G+ +A M ++ K+V E +++ +R G++++ EH+
Sbjct: 53 -LGVQADKVQQEIERMVGRGQTPVTA--MTYTPRAKKVIELSIDEARKLGHSYVGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG-KT 259
LGL +G A RVL + V++N + L G+ I+G K
Sbjct: 110 LGLIREGEGVAARVLANMNVNLNKARQQVLQLLGGDAM---------------DIAGDKD 154
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A++ +P L+ DLT A + +DPVIGRE EI+R+IQ+L RRTKNNP+L+GE
Sbjct: 155 ASVGTP------TLDSLARDLTQMARDGKLDPVIGREKEIERVIQVLSRRTKNNPVLIGE 208
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA RIV +VP L +KR+M LDMG ++AG K RGE E R+ ++ EI+
Sbjct: 209 PGVGKTAIAEGLAQRIVTGDVPETLRNKRVMVLDMGTVVAGTKYRGEFEDRLKKIMDEIR 268
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++G+VILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 QAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKHI 323
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+++ EPS E+A+ IL GLR++YEAHH K T EA+ AAV LS RYISD
Sbjct: 324 EKDPALERRFQPIMVDEPSPEEALEILKGLRDRYEAHHRVKITDEALEAAVKLSDRYISD 383
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQG 556
R+LPDKAIDL+DEA SR + + PP+ + Q++ V++ + VQ
Sbjct: 384 RFLPDKAIDLIDEAASRVRLRTH-----------TAPPNLKELEQKLEKVRSEKDAAVQS 432
Query: 557 SRLKYDDVVASMGDTS-------EIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
++ AS+ D E + E+ + DD V +DIA + S W+GIPV
Sbjct: 433 QEF---ELAASLRDEEQKIKEELERLKETWQKTQQLDD--VRVTAEDIAHIVSSWTGIPV 487
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
QQ+ DE L+ LE+ L +RVIGQDEAV A+++A++R+R GLKDP RP + +F GPTG
Sbjct: 488 QQLQQDESERLLNLEKILHERVIGQDEAVEAVAKAIRRARAGLKDPKRPIGSFIFLGPTG 547
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELA++LA FG
Sbjct: 548 VGKTELARALAEALFGD 564
>gi|357149204|ref|XP_003575035.1| PREDICTED: chaperone protein ClpC1, chloroplastic-like
[Brachypodium distachyon]
Length = 921
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 271/620 (43%), Positives = 381/620 (61%), Gaps = 55/620 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 87 VRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 146
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 147 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 193
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D N++ V R+ GE ++
Sbjct: 194 SEHLLLGLLREGEGVAARVLESLGADPNNIRT-QVIRMVGE----------------STE 236
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP
Sbjct: 237 AVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQDQIERVTQILGRRTKNNPC 296
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 297 LIGEPGVGKTAIAEGLAQRITNGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 356
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI++S D+ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 357 EEIKQSDDIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEY 411
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T +A+ AA LS +
Sbjct: 412 RKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHKLRYTDDALIAAAKLSYQ 471
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVV 554
YISDR+LPDKAIDL+DEAGSR + + L + +E+R V + +E V
Sbjct: 472 YISDRFLPDKAIDLIDEAGSRVRL---------RHAQLPDEAKELDKELRQVTKDKNEAV 522
Query: 555 QGSRL----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSG 606
+G + D + +++ S + E VGP DI + S W+G
Sbjct: 523 RGQDFEKAGELRDKEMELKAQITAIIDKSKEMVKAETESGEVGPLVTEADIQHIVSSWTG 582
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV+++++DE L+ +EE L +R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F G
Sbjct: 583 IPVEKVSSDESDRLLKMEETLHQRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 642
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGK+ELAK+LA+ YFGS
Sbjct: 643 PTGVGKSELAKALASYYFGS 662
>gi|253577148|ref|ZP_04854468.1| ATPase AAA-2 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251843392|gb|EES71420.1| ATPase AAA-2 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 814
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 260/612 (42%), Positives = 368/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHVLLGLIREGEGIAAKALIGLGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVETLIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLG------------------SSEAV 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 149 SSHHGTPTNVNTPTLDSLARDLTAAAKEGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQKIINNEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+A++IL GLR++YEAHH K T EAI AV LS RYI
Sbjct: 324 IEKDAALERRFQPITVDQPSVEEAIQILHGLRDRYEAHHRVKITDEAIEQAVKLSDRYIQ 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ E R E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLNSY-----------TVPPNLKQLESRLEDIRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ DT + + E + + E + V P+DIA V + W+GIPV ++
Sbjct: 433 SQEFEKAAALRDTEQKIREELDTTKNQWKEKQGRTDSEVTPEDIAQVVASWTGIPVNKLK 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E+ L +RVIGQ+EAV A+SRA++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETERLLNMEKILHERVIGQEEAVKAVSRAIRRARAGLKDPKRPMGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|384136760|ref|YP_005519474.1| ATPase [Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|339290845|gb|AEJ44955.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 812
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 267/617 (43%), Positives = 374/617 (60%), Gaps = 65/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
++ RFTERA K + +Q EA L V T+H+LLGLI R G + +
Sbjct: 2 MYARFTERAQKVLALAQEEASRLNHPGVGTEHILLGLI---REGEGIAAKALQM------ 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + Q+ + +G+ +A M ++ K+V E +++ +R G++++ EH+
Sbjct: 53 -LGVQADKVQQEIERMVGRGQTPVTA--MTYTPRAKKVIELSIDEARKLGHSYVGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG-KT 259
LGL +G A RVL + V++N + L G+ I+G K
Sbjct: 110 LGLIREGEGVAARVLANMNVNLNKARQQVLQLLGGDAM---------------DIAGDKD 154
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A++ +P L+ DLT A + +DPVIGRE EI+R+IQ+L RRTKNNP+L+GE
Sbjct: 155 ASVGTP------TLDSLARDLTQMARDGKLDPVIGREKEIERVIQVLSRRTKNNPVLIGE 208
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA RIV +VP L +KR+M LDMG ++AG K RGE E R+ ++ EI+
Sbjct: 209 PGVGKTAIAEGLAQRIVTGDVPETLRNKRVMVLDMGTVVAGTKYRGEFEDRLKKIMDEIR 268
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++G+VILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 QAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKHI 323
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+++ EPS E+A+ IL GLR++YEAHH K T EA+ AAV LS RYISD
Sbjct: 324 EKDPALERRFQPIMVDEPSPEEALEILKGLRDRYEAHHRVKITDEALEAAVKLSDRYISD 383
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQG 556
R+LPDKAIDL+DEA SR + + PP+ + Q++ V++ + VQ
Sbjct: 384 RFLPDKAIDLIDEAASRVRLRTH-----------TAPPNLKELEQKLEKVRSEKDAAVQS 432
Query: 557 SRLKYDDVVASMGDTS-------EIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
++ AS+ D E + E+ + DD V +DIA + S W+GIPV
Sbjct: 433 QEF---ELAASLRDEEQKIKEELERLKETWQKTQQLDD--VRVTEEDIAHIVSSWTGIPV 487
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
QQ+ DE L+ LE+ L +RVIGQDEAV A+++A++R+R GLKDP RP + +F GPTG
Sbjct: 488 QQLQQDESERLLNLEKILHERVIGQDEAVEAVAKAIRRARAGLKDPKRPIGSFIFLGPTG 547
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELA++LA FG
Sbjct: 548 VGKTELARALAEALFGD 564
>gi|323703791|ref|ZP_08115429.1| ATPase AAA-2 domain protein [Desulfotomaculum nigrificans DSM 574]
gi|323531260|gb|EGB21161.1| ATPase AAA-2 domain protein [Desulfotomaculum nigrificans DSM 574]
Length = 818
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 265/617 (42%), Positives = 375/617 (60%), Gaps = 58/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+F+RFTERA ++ +Q EA+ L + T+H+LLGLI + D LE GIT DK
Sbjct: 1 MFQRFTERAKHVLVLAQEEARRLRYPNIGTEHILLGLIKQGDSFAAKALEQLGITADK-- 58
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V ++ + T +P +P + KRV E AVE SR G+N++ EH
Sbjct: 59 --VSAVLEQMVEKGT-------QPI--LGDIPPTPRAKRVLELAVEESRMLGHNYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VLK LG D++ + ++ L +
Sbjct: 108 LLLGLIREGEGVAAQVLKSLGADLDRVRQQIINMLG---------------GAPGGAAPG 152
Query: 259 TAALKSP-GRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
P G + +L+QF DLT A E +DPV+GR EI+R+IQ+L RRTKNNP+L+
Sbjct: 153 GQGQSCPAGGCKTVSLDQFGRDLTGLAKEGKLDPVVGRAKEIERVIQVLSRRTKNNPVLI 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RIV+ VP LL++R+++LD+ ++AG K RGE E R+ ++ E
Sbjct: 213 GEPGVGKTAIAEGLAQRIVEGNVPEILLNRRVVTLDLAGMVAGTKYRGEFEDRLKKIMEE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++G+VILFIDE+HTLIG+G +D +N+LKP+L RGE+Q I +TT DE+R
Sbjct: 273 IRQAGNVILFIDELHTLIGAGAA-----EGAIDAANILKPALARGEIQTIGATTLDEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EP+ E+ ++IL G+R+KYEAHH + T EAI AA LS RYI
Sbjct: 328 YIEKDPALERRFQPIQVDEPTVEETIQILQGIRDKYEAHHRVRITDEAITAAARLSDRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
+DR+LPDKAIDL+DEA SR I+ F + PPD D +E+ ++ E
Sbjct: 388 TDRFLPDKAIDLIDEAASRVRIKAF-----------TAPPDLKDKEKELEALRKEKEAAI 436
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA------VVGPDDIAAVASLWSGIPV 609
++ +++ A + D ++++ S L A + A VV +DIA + S W+G+PV
Sbjct: 437 NNQ-EFEK-AAELRDREQVLM-SELNQARESWNQAKGGDGLVVTEEDIAGIVSSWTGVPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
Q++ +E L+ LEE L +RV+GQD+AV A+SRAV+R+R GLKDP RP + +F GPTG
Sbjct: 494 QKLAQEESEKLLNLEEVLHQRVVGQDDAVKAVSRAVRRARAGLKDPKRPVGSFIFLGPTG 553
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELA++LA FG
Sbjct: 554 VGKTELARALAEALFGD 570
>gi|125974293|ref|YP_001038203.1| ATPase AAA-2 [Clostridium thermocellum ATCC 27405]
gi|256003489|ref|ZP_05428479.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 2360]
gi|281418347|ref|ZP_06249367.1| ATPase AAA-2 domain protein [Clostridium thermocellum JW20]
gi|385779762|ref|YP_005688927.1| ATPase [Clostridium thermocellum DSM 1313]
gi|419722358|ref|ZP_14249502.1| ATPase AAA-2 domain protein [Clostridium thermocellum AD2]
gi|419725938|ref|ZP_14252972.1| ATPase AAA-2 domain protein [Clostridium thermocellum YS]
gi|125714518|gb|ABN53010.1| ATPase AAA-2 domain protein [Clostridium thermocellum ATCC 27405]
gi|255992513|gb|EEU02605.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 2360]
gi|281409749|gb|EFB40007.1| ATPase AAA-2 domain protein [Clostridium thermocellum JW20]
gi|316941442|gb|ADU75476.1| ATPase AAA-2 domain protein [Clostridium thermocellum DSM 1313]
gi|380770714|gb|EIC04600.1| ATPase AAA-2 domain protein [Clostridium thermocellum YS]
gi|380781543|gb|EIC11197.1| ATPase AAA-2 domain protein [Clostridium thermocellum AD2]
Length = 818
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 269/620 (43%), Positives = 368/620 (59%), Gaps = 70/620 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
++ RFTE+A KA+ SQ A LG + V T+HLLLGL+ E L+S G+T +K
Sbjct: 1 MYGRFTEKAQKAINISQNMAIELGHNYVGTEHLLLGLVKEGSGVAARVLQSQGVTEEKVI 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + G+P F+ TKRV E + +R G+N+I EH
Sbjct: 61 REIEELIGR--------GEMMGQPLD------FTPRTKRVLELSYREARRMGHNYIGTEH 106
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LG+ + A R+LK LGV+ L ++ L E P G
Sbjct: 107 LLLGIMKEGESVAVRILKDLGVEHQKLVQEIMNMLSEEAPNSTGVPK-----------GH 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P L QF DLT A E DPVIGR+ EI+R+IQIL RRTKNNP L+G
Sbjct: 156 SSYSNTP------TLNQFGRDLTEMAREAKFDPVIGRDKEIERVIQILSRRTKNNPCLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ +P L KR+++LD+ ++AGAK RGE E R+ + EI
Sbjct: 210 EPGVGKTAIAEGLAQKIVEGNIPEILKDKRVVTLDLSSMVAGAKYRGEFEERLKKALDEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HT+IG+G +D SN+LKPSL RGE+Q I +TT DE+R
Sbjct: 270 RRAGNVILFIDEMHTIIGAGAAE-----GAIDASNILKPSLARGEIQVIGATTIDEYRKH 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+L+ EP++E+A+ IL GLR+KYEAHH+ K T EA+ AAV++S RYI+
Sbjct: 325 IEKDAALERRFQPILVGEPTKEEAIEILRGLRDKYEAHHSVKITDEALVAAVNMSDRYIT 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA SR ++ F + PPD ++ + E V+ R
Sbjct: 385 DRFLPDKAIDLIDEAASRVRLKSF-----------TAPPD--------LKHLEEKVERLR 425
Query: 559 LKYDDVV-------ASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWS 605
+ +D + A+ E +++ L A D VV DDIA + S W+
Sbjct: 426 KEKEDAIVCQEFEKAARIRDEEQRLKNELEKAKDSWRQKNQTTTNVVSEDDIAVIVSDWT 485
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV+++ +E L+ +E+ L KRVIGQDEAV AIS+A++R RVGLKDP RP + +F
Sbjct: 486 GIPVKRLAEEESERLMKMEDILHKRVIGQDEAVKAISKAIRRGRVGLKDPKRPVGSFIFL 545
Query: 666 GPTGVGKTELAKSLAACYFG 685
GPTGVGKTEL+K+LA FG
Sbjct: 546 GPTGVGKTELSKALAEALFG 565
>gi|312135577|ref|YP_004002915.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
owensensis OL]
gi|311775628|gb|ADQ05115.1| ATPase AAA-2 domain protein [Caldicellulosiruptor owensensis OL]
Length = 829
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 278/634 (43%), Positives = 379/634 (59%), Gaps = 59/634 (9%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVS 143
RFTERA KA++ +Q+ A LG + V T+HLLLGLI E GI A + S
Sbjct: 5 RFTERAEKAIMLAQQAAAELGHNYVGTEHLLLGLIREG--------GGI----AARVLQS 52
Query: 144 IWHSTNNQDTDDAAAQGKPFSSAAKMP--FSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ + G+ + P F+ TKRVFE A +R G ++I+ EHI L
Sbjct: 53 QGVTEEKIIDEIEELIGRGDYQLPQPPTGFTPRTKRVFEIAFMEARRLGSSYISTEHILL 112
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
+ + A R+L LGVD L + +L E AK ++ G +
Sbjct: 113 AIMREGESVAVRILMDLGVDPQRLFE-EIMKLLNEDAK--------------NVGGVSPQ 157
Query: 262 LKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ +T+ + L QF DLT A E IDPVIGRE EI+R+IQIL RRTKNNP L+GE
Sbjct: 158 QQINFQTQNTPTLNQFSRDLTQLALEGKIDPVIGREKEIERVIQILSRRTKNNPCLIGEP 217
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAI EGLA +IV+ VP L +KR+++LD+ ++AG+K RGE E R+ + E++K
Sbjct: 218 GVGKTAIVEGLAQKIVEGNVPELLRNKRVVALDLSAMVAGSKFRGEFEERLKKAMEEVRK 277
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE+R E
Sbjct: 278 AGNVILFIDEMHTIIGAGAAE-----GAIDASNILKPALARGEIQVIGATTLDEYRKHIE 332
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+L+ EP+ E+A++IL GLR+KYEAHH K T EAI AAV LS +YI+DR
Sbjct: 333 KDAALERRFQPILVGEPTPEEAIQILKGLRDKYEAHHGVKITDEAIKAAVELSTKYITDR 392
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
YLPDKAIDL+DEA SR + ++ + PP E + + E + RL+
Sbjct: 393 YLPDKAIDLIDEAASRVRLRMY-----------TLPPHVKEFEEKIEKLEKEKEEAIRLQ 441
Query: 561 YDDVVASMGDTSEIV-----VESSLPSASDDDEPA--VVGPDDIAAVASLWSGIPVQQIT 613
+ A + D EI+ +E S ++D + +V DDIA + S W+GIPV ++T
Sbjct: 442 EYEKAAKIRD--EIMKLRQELEKIKNSWTNDQQKTQPIVTEDDIAYIVSSWTGIPVNKLT 499
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
DE L+ LEE L +RV+GQDEAV A++RA++R RVGLKDP RP + +F GPTGVGKT
Sbjct: 500 EDESERLLKLEEVLHRRVVGQDEAVKAVARAIRRGRVGLKDPKRPIGSFIFLGPTGVGKT 559
Query: 674 ELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
ELA++LA FG+ +RI + FN K+
Sbjct: 560 ELARALAEALFGTEDALIRIDMSEYMEKFNVSKL 593
>gi|392958574|ref|ZP_10324083.1| Class III stress response-related ATPase, ClpC [Bacillus macauensis
ZFHKF-1]
gi|391875475|gb|EIT84086.1| Class III stress response-related ATPase, ClpC [Bacillus macauensis
ZFHKF-1]
Length = 810
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 265/610 (43%), Positives = 373/610 (61%), Gaps = 52/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + V T+H+LLGLI E G I
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHNNVGTEHILLGLIRE----------GEGIAAKALH 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V+ + ++ + +G+ S + ++ K+V E +++ +R G++++ EHI
Sbjct: 52 VLGLGPEKIQKEVETLIGRGQ--ESVQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G E S ++ G +A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG-----SNEAS-------SNHRGSSA 156
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLTA A + +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 157 NANTP------TLDSLARDLTAVAKDGSLDPVIGRAKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIINNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ ++EP+++++ +IL GLR++YEAHH K T EAI AAV LS RYISDR
Sbjct: 326 KDAALERRFQPITVNEPTKDESTQILQGLRDRYEAHHRVKITDEAIEAAVTLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 386 FLPDKAIDLIDEAASKVRLRSY-----------TAPPNLKELEVKLEEVRKEKDAAVQSQ 434
Query: 561 YDDVVASMGDTSEIVVES-----SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ DT + + E ++ E V P+DIA V S W+G+PV ++ +
Sbjct: 435 EFEKAASLRDTEQRLREELEKTKNVWKEKQGQENTEVTPEDIAQVVSSWTGVPVAKLAQE 494
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LEE L RVIGQDEAV +IS+A++R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 495 ETERLLKLEEILHNRVIGQDEAVQSISKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 554
Query: 676 AKSLAACYFG 685
A+++A FG
Sbjct: 555 ARAVAESLFG 564
>gi|186510816|ref|NP_566912.2| Clp ATPase [Arabidopsis thaliana]
gi|75213256|sp|Q9SXJ7.1|CLPC2_ARATH RecName: Full=Chaperone protein ClpC2, chloroplastic; AltName:
Full=ATP-dependent Clp protease ATP-binding subunit ClpC
homolog 2; AltName: Full=AtClpC; AltName: Full=Casein
lytic proteinase C2; Flags: Precursor
gi|5360574|dbj|BAA82062.1| AtClpC [Arabidopsis thaliana]
gi|332644945|gb|AEE78466.1| Clp ATPase [Arabidopsis thaliana]
Length = 952
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 272/616 (44%), Positives = 389/616 (63%), Gaps = 51/616 (8%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKARE 139
++FERFTE+A+K ++ SQ EA+ LG + V T+ +LLGLI E +GI +
Sbjct: 113 AMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEG--------TGIAAKVLKS 164
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 165 MGINLKDS--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHL 221
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A RVL+ LG D +++ V R+ GE N ++
Sbjct: 222 LLGLLREGEGVAARVLENLGADPSNIR-TQVIRMVGE---------------NNEVTASV 265
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
S ++ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+GE
Sbjct: 266 GGGSSG-NSKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILARRTKNNPCLIGE 324
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA RI +VP + K +++LDMGLL+AG K RGE E R+ L+ EI+
Sbjct: 325 PGVGKTAIAEGLAQRIASGDVPETIEGKTVITLDMGLLVAGTKYRGEFEERLKKLMEEIR 384
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
+S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 385 QSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTIDEYRKHI 439
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPV + EP+ E+A++IL GLRE+YE HH ++T EA+ AA LS +YISD
Sbjct: 440 EKDPALERRFQPVKVPEPTVEEAIQILQGLRERYEIHHKLRYTDEALVAAAQLSHQYISD 499
Query: 500 RYLPDKAIDLVDEAGSRA---HIELFK--RKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
R+LPDKAIDL+DEAGSR H +L + R+ E+Q ++K ++ +R+ E+
Sbjct: 500 RFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKQLRQITKEKNEA---VRSQD--FEMA 554
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIPVQ 610
R + ++ A + + V+ A ++E GP DI + + W+GIPV+
Sbjct: 555 GSHRDREIELKAEIAN----VLSRGKEVAKAENEAEEGGPTVTESDIQHIVATWTGIPVE 610
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++++DE L+ +E+ L RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGV
Sbjct: 611 KVSSDESSRLLQMEQTLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGV 670
Query: 671 GKTELAKSLAACYFGS 686
GK+ELAK+LAA YFGS
Sbjct: 671 GKSELAKALAAYYFGS 686
>gi|379724697|ref|YP_005316828.1| protein ClpC [Paenibacillus mucilaginosus 3016]
gi|386727451|ref|YP_006193777.1| protein ClpC [Paenibacillus mucilaginosus K02]
gi|378573369|gb|AFC33679.1| ClpC [Paenibacillus mucilaginosus 3016]
gi|384094576|gb|AFH66012.1| protein ClpC [Paenibacillus mucilaginosus K02]
Length = 814
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 266/612 (43%), Positives = 371/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLSLAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALIALGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVESLI--------------GRGQEQPSNIAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G + E P+ G
Sbjct: 108 ILLGLIREGEGVAARVLGNLGVSLNK-ARQQVLQLLG--SSEVVSPN----------HGN 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A + +P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 155 PANVNTP------TLDGLARDLTAYAKEGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQKIVANEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+++LFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIVLFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS ++A++IL GLR++YEAHH K T EAI AV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPSPDEAIQILHGLRDRYEAHHRVKITDEAIEQAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + + + PPD E R E +
Sbjct: 384 DRFLPDKAIDLIDEASSKVRLRSY-----------TVPPDLKKLESRLEDIRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + E + ++ E + V PDDIA V + W+GIPV ++
Sbjct: 433 SQEFEKAASLRDTEQKLREELDSTKNEWKEKQGRTDSEVTPDDIAQVVASWTGIPVVKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E L RVIGQDEAV A+SRA++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETQRLLQMESILHDRVIGQDEAVKAVSRAIRRARAGLKDPKRPMGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESLFG 564
>gi|255527257|ref|ZP_05394138.1| ATPase AAA-2 domain protein [Clostridium carboxidivorans P7]
gi|296187235|ref|ZP_06855631.1| negative regulator of genetic competence ClpC/MecB [Clostridium
carboxidivorans P7]
gi|255509042|gb|EET85401.1| ATPase AAA-2 domain protein [Clostridium carboxidivorans P7]
gi|296048106|gb|EFG87544.1| negative regulator of genetic competence ClpC/MecB [Clostridium
carboxidivorans P7]
Length = 812
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 262/613 (42%), Positives = 366/613 (59%), Gaps = 54/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+F RFTERA K + ++Q EA+ L V T+H+LLG++ E L IT+D R+
Sbjct: 2 MFGRFTERAQKVLFYAQEEAQVLQHGYVGTEHILLGILKEQGIAKQLLNDINITVDDVRD 61
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
V ++ +G ++P + TKR+ E ++ +R+ +N+I+PEHI
Sbjct: 62 LV------------EEYEGKGDIDLYKNEIPLTPRTKRLLELSLFEARNLNHNYISPEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
L L +G A +L LG D + L L GE NS K+
Sbjct: 110 LLALIREAEGVAFTILNNLGADFDKLRKELTEALSGEQTGN------------NSDFNKS 157
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+P L+QF DLT A E +DPV+GR+ E QR+++ILCRRTKNNP L+G+
Sbjct: 158 NVEPTP------TLDQFGRDLTEMAKEGKLDPVVGRDKETQRVLEILCRRTKNNPCLIGD 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTA+AEGLA +IV +P L KR+++L++ ++AG+K RGE E R+ ++ EI+
Sbjct: 212 PGVGKTAVAEGLAQKIVVGNIPELLKDKRVVTLELSSMVAGSKYRGEFEERLKKVMEEIR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
KSG+VILFIDE+HT++G+G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 272 KSGNVILFIDEIHTIVGAGAAE-----GAIDASNILKPALARGEIQCIGATTIDEYRKYI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EP++E+AV IL GLR+KYEAHH K T +AI AAV+LS RYI+D
Sbjct: 327 EKDSALERRFQPITVGEPNKEEAVLILKGLRDKYEAHHRVKITDDAIEAAVNLSDRYITD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEA S+ IE L PPD E + + E R+
Sbjct: 387 RFLPDKAIDLMDEAASKIRIE-----------SLVAPPDLKNSEEQLEKITKEKEDSIRV 435
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPA------VVGPDDIAAVASLWSGIPVQQIT 613
+ + A + D E ++ L ++ + VV +IA+V S W+ IPV+++T
Sbjct: 436 QDFEKAARLRD-KEKELKDELEGLKNNWKTKKEVSNLVVSEKEIASVVSKWTNIPVEKLT 494
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L RV+GQ+EAV +ISRAV+R+RVGLKDP RP + +F GPTGVGKT
Sbjct: 495 EKESQRLLKLEEILHNRVVGQNEAVKSISRAVRRARVGLKDPKRPIGSFIFLGPTGVGKT 554
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 555 ELSKALAEAMFGD 567
>gi|28212201|ref|NP_783145.1| negative regulator of genetic competence mecB/clpC [Clostridium
tetani E88]
gi|28204645|gb|AAO37082.1| negative regulator of genetic competence mecB/clpC [Clostridium
tetani E88]
Length = 811
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 255/612 (41%), Positives = 364/612 (59%), Gaps = 53/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RF ERA K ++F+Q A++ V T+H+LLG++ E+ L+ + E+
Sbjct: 2 IFGRFNERAQKVLVFAQESARNYRHGYVGTEHILLGILKEEGISKNILKDMNVELEDVES 61
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++ + + D + ++P + TKR+ E ++ +R+ +NFI PEHI
Sbjct: 62 LIEEYEGKGDLDL-----------YSNEIPLTPRTKRLLEISLLEARNLNHNFITPEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L L +G A +L LGVD N L + + GE + V +S
Sbjct: 111 LALIKESEGIAFTILSNLGVDFNRLRKELLENVAGE-----------RSVNRSSSDTNKK 159
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L +F DLT A E +DPVIGR+ E QR++QILCRRTKNNP L+G+
Sbjct: 160 NQDTP------TLNEFGRDLTDMAMEGKLDPVIGRDKETQRVLQILCRRTKNNPCLIGDP 213
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV+ +P L KR+++LD+ ++AGAK RGE E R+ ++ EI+K
Sbjct: 214 GVGKTAIAEGLAQKIVEGNIPEILKDKRVVTLDLSSMIAGAKYRGEFEDRLKKVMEEIRK 273
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
SG+VILFIDE+HT+IG+G +D SN+LKP+L RGE+QCI +TT DE+R E
Sbjct: 274 SGNVILFIDEIHTIIGAGAA-----EGAIDASNILKPALARGEIQCIGATTIDEYRKHIE 328
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP++E+A+ IL GLR+KYEAHH T EAI AAV+LS RYI++R
Sbjct: 329 KDSALERRFQPITVGEPTKEEAILILRGLRDKYEAHHRANITDEAIEAAVNLSDRYITER 388
Query: 501 YLPDKAIDLVDEAGSRAHIELF-----KRKKEQQTCILSKPPDDYW--QEIRTVQAMHEV 553
YLPDKAIDL+DEA S+ IE ++ E+ ++K +D Q+ + +
Sbjct: 389 YLPDKAIDLMDEAASKVRIENMIAPTDMKELEENLEKVTKEKEDAIRVQDFEKAAQLRDH 448
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + + +++ + ++ V IAAV S W+ IPV+++T
Sbjct: 449 EKDLKYRLENLKSDWKTQKQVAT-------------LTVDETQIAAVVSKWTNIPVRKLT 495
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L RVIGQ+EAV ++SRAV+R+RVGLKDPNRP + +F GPTGVGKT
Sbjct: 496 EKESERLLKLEETLHNRVIGQNEAVKSVSRAVRRARVGLKDPNRPIGSFIFLGPTGVGKT 555
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 556 ELSKALAEAMFG 567
>gi|333922411|ref|YP_004495991.1| ATPase AAA-2 domain-containing protein [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333747972|gb|AEF93079.1| ATPase AAA-2 domain protein [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 818
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/617 (42%), Positives = 375/617 (60%), Gaps = 58/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+F+RFTERA ++ +Q EA+ L + T+H+LLGLI + D LE GIT DK
Sbjct: 1 MFQRFTERAKHVLVLAQEEARRLRYPNIGTEHILLGLIKQGDSFAAKALEQLGITADK-- 58
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V ++ + T +P +P + KRV E AVE SR G+N++ EH
Sbjct: 59 --VSAVLEQMVEKGT-------QPI--LGDIPPTPRAKRVLELAVEESRMLGHNYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VLK LG D++ + ++ L +
Sbjct: 108 LLLGLIREGEGVAAQVLKSLGADLDRVRQQIINMLG---------------GAPGGAAPG 152
Query: 259 TAALKSP-GRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
P G + +L+QF DLT A E +DPV+GR EI+R+IQ+L RRTKNNP+L+
Sbjct: 153 GQGQSCPAGGCKTVSLDQFGRDLTGLAKEGKLDPVVGRAKEIERVIQVLSRRTKNNPVLI 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RIV+ VP LL++R+++LD+ ++AG K RGE E R+ ++ E
Sbjct: 213 GEPGVGKTAIAEGLAQRIVEGNVPEILLNRRVVTLDLAGMVAGTKYRGEFEDRLKKIMEE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++G+VILFIDE+HTLIG+G +D +N+LKP+L RGE+Q I +TT DE+R
Sbjct: 273 IRQAGNVILFIDELHTLIGAGAA-----EGAIDAANILKPALARGEIQTIGATTLDEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EP+ E+ ++IL G+R+KYEAHH + T EAI AA LS RYI
Sbjct: 328 YIEKDPALERRFQPIQVDEPTVEETIQILQGIRDKYEAHHRVRITDEAITAAARLSDRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
+DR+LPDKAIDL+DEA SR I+ F + PPD D +E+ ++ E
Sbjct: 388 TDRFLPDKAIDLIDEAASRVRIKAF-----------TAPPDLKDKEKELEALRKEKEAAI 436
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPV 609
++ +++ A + D ++++ S L A + + VV +DIA + S W+G+PV
Sbjct: 437 NNQ-EFEK-AAELRDREQVLM-SELNQARESWNQTKGGDGLVVTEEDIAGIVSSWTGVPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
Q++ +E L+ LEE L +RV+GQD+AV A+SRAV+R+R GLKDP RP + +F GPTG
Sbjct: 494 QKLAQEESEKLLNLEEVLHQRVVGQDDAVKAVSRAVRRARAGLKDPKRPVGSFIFLGPTG 553
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELA++LA FG
Sbjct: 554 VGKTELARALAEALFGD 570
>gi|302763781|ref|XP_002965312.1| hypothetical protein SELMODRAFT_439163 [Selaginella moellendorffii]
gi|300167545|gb|EFJ34150.1| hypothetical protein SELMODRAFT_439163 [Selaginella moellendorffii]
Length = 937
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 272/620 (43%), Positives = 384/620 (61%), Gaps = 55/620 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ +
Sbjct: 100 VVAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLK 159
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
+AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 160 EARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 206
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D ++ V R+ GE ++
Sbjct: 207 SEHLLLGLLREGEGVAARVLENLGADPGNIR-TQVIRMVGE----------------STE 249
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP
Sbjct: 250 AVGASVGGGSSSNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPC 309
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 310 LIGEPGVGKTAIAEGLAQRIATGDVPETIEGKKVVTLDMGLLVAGTKYRGEFEERLKKLM 369
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI++S D+IL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 370 EEIKQSDDIILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTIDEY 424
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T EA+ AA LS +
Sbjct: 425 RKHIEKDPALERRFQPVNVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQ 484
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVV 554
YISDR+LPDKAIDL+DEAGSR + + L + D +E+R + + +E V
Sbjct: 485 YISDRFLPDKAIDLIDEAGSRVRL---------RHAQLPEEARDLDKELRQITKEKNEAV 535
Query: 555 QGS--------RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
+G R + ++ A + +E E S + +V DI + S W+G
Sbjct: 536 RGQDFEKAGELRDREMELKAQISAITEKGKEKSKAETEAGETGPLVTEADIQQIVSAWTG 595
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV++++ DE L+ +EE L +RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F G
Sbjct: 596 IPVEKVSTDESDRLMKMEETLHQRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 655
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGK+ELAK+LAA YFGS
Sbjct: 656 PTGVGKSELAKALAAYYFGS 675
>gi|1168972|sp|P46523.1|CLPA_BRANA RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA
homolog, chloroplastic; Flags: Precursor
gi|406311|emb|CAA53077.1| clpA [Brassica napus]
Length = 874
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 273/618 (44%), Positives = 378/618 (61%), Gaps = 55/618 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 38 VKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 97
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 98 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 144
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D +++ V R+ GE N +
Sbjct: 145 SEHLLLGLLREGEGVAARVLENLGADPSNIRT-QVIRMVGE---------------NNEV 188
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ G + LE++ +LT A E +DPV+GR +I+R++QIL RRTKNNP
Sbjct: 189 TANVGG--GSGTNKMPTLEEYGTNLTKLAEEGKLDPVVGRHPQIERVVQILGRRTKNNPC 246
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI V K++++LDMGLL AG K RGE E RV L+
Sbjct: 247 LIGEPGVGKTAIAEGLAQRIASGVVRETSEGKKVITLDMGLLAAGTKYRGEFEERVKKLM 306
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 307 EEIKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEY 361
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T E++ AA LS +
Sbjct: 362 RKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLSYQ 421
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YISDR+LPD+AIDL+DEAGSR + + +E + + +E+R + +E V+
Sbjct: 422 YISDRFLPDRAIDLMDEAGSRVRLRHAQVPEEAR---------ELEKELRQITKENEAVR 472
Query: 556 GSRLKY-----DDVVASMGDTSEIVV---ESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
G + D + + S I E S + DE +V DI + S W+GI
Sbjct: 473 GQDFEKAGTLRDREIELRAEVSAIQAKGKEMSKAESETGDEGPMVTESDIQHIVSSWTGI 532
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
V++++ DE LL+ +EE L KRVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GP
Sbjct: 533 LVEKVSTDESDLLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFFGP 592
Query: 668 TGVGKTELAKSLAACYFG 685
TGVGK+ELAK+LAA YFG
Sbjct: 593 TGVGKSELAKALAAYYFG 610
>gi|334185828|ref|NP_001190035.1| Clp ATPase [Arabidopsis thaliana]
gi|332644946|gb|AEE78467.1| Clp ATPase [Arabidopsis thaliana]
Length = 921
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 272/616 (44%), Positives = 389/616 (63%), Gaps = 51/616 (8%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKARE 139
++FERFTE+A+K ++ SQ EA+ LG + V T+ +LLGLI E +GI +
Sbjct: 82 AMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEG--------TGIAAKVLKS 133
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 134 MGINLKDS--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHL 190
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A RVL+ LG D +++ V R+ GE N ++
Sbjct: 191 LLGLLREGEGVAARVLENLGADPSNIR-TQVIRMVGE---------------NNEVTASV 234
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
S ++ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+GE
Sbjct: 235 GGGSSG-NSKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILARRTKNNPCLIGE 293
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA RI +VP + K +++LDMGLL+AG K RGE E R+ L+ EI+
Sbjct: 294 PGVGKTAIAEGLAQRIASGDVPETIEGKTVITLDMGLLVAGTKYRGEFEERLKKLMEEIR 353
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
+S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 354 QSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTIDEYRKHI 408
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPV + EP+ E+A++IL GLRE+YE HH ++T EA+ AA LS +YISD
Sbjct: 409 EKDPALERRFQPVKVPEPTVEEAIQILQGLRERYEIHHKLRYTDEALVAAAQLSHQYISD 468
Query: 500 RYLPDKAIDLVDEAGSRA---HIELFK--RKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
R+LPDKAIDL+DEAGSR H +L + R+ E+Q ++K ++ +R+ E+
Sbjct: 469 RFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKQLRQITKEKNEA---VRSQD--FEMA 523
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIPVQ 610
R + ++ A + + V+ A ++E GP DI + + W+GIPV+
Sbjct: 524 GSHRDREIELKAEIAN----VLSRGKEVAKAENEAEEGGPTVTESDIQHIVATWTGIPVE 579
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++++DE L+ +E+ L RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGV
Sbjct: 580 KVSSDESSRLLQMEQTLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGV 639
Query: 671 GKTELAKSLAACYFGS 686
GK+ELAK+LAA YFGS
Sbjct: 640 GKSELAKALAAYYFGS 655
>gi|347751623|ref|YP_004859188.1| ATPase AAA [Bacillus coagulans 36D1]
gi|347584141|gb|AEP00408.1| ATPase AAA-2 domain protein [Bacillus coagulans 36D1]
Length = 816
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 266/613 (43%), Positives = 371/613 (60%), Gaps = 59/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + SQ EA L + + T+H+LLGL+ E G++ +K +
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRLKHNNIGTEHILLGLVREGEGIAAKALYGLGLSAEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V ++ G+ S + ++ K+V E +++ +R G++++ EH
Sbjct: 62 EEVETLI------------GNGQEISQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N + L G E S+ G
Sbjct: 108 ILLGLIREGEGVAARVLTNLGVSLNKARQQVLQLL---------------GNSEASVQGG 152
Query: 259 TAA-LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+AA + +P L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+
Sbjct: 153 SAASVSTP------TLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI 206
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ E
Sbjct: 207 GEPGVGKTAIAEGLAQQIVHNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDE 266
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 267 IRQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRK 321
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EP+ +++++IL GLR++YEAHH T EAI AAV LS RYI
Sbjct: 322 YIEKDAALERRFQPIQVDEPTIDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYI 381
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDL+DEAGS+ + F + PP+ E++ + E
Sbjct: 382 ADRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELELKLEEVRKEKDAAV 430
Query: 558 RLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + + A++ DT + + E + A E + V DDIA V S W+G+PV ++
Sbjct: 431 QSQEFEKAAALRDTEQKLREQLEETKKNWKAKQGQENSEVTVDDIALVVSSWTGVPVTKL 490
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
E L+ LEE L RVIGQ+EAV A+++AV+R+R GLKDP RP + +F GPTGVGK
Sbjct: 491 AQTETERLLHLEEILHSRVIGQEEAVLAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGK 550
Query: 673 TELAKSLAACYFG 685
TELA++LA FG
Sbjct: 551 TELARALAEAMFG 563
>gi|168028746|ref|XP_001766888.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681867|gb|EDQ68290.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 836
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 274/617 (44%), Positives = 378/617 (61%), Gaps = 55/617 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFTE+A+K ++ SQ EA+ LG + V T+ +LLGLI E L+S G+ + +AR
Sbjct: 1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKEAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LG D +++ V R+ GE N+ +
Sbjct: 108 LLLGLLREGEGVAARVLENLGADPSNIRT-QVIRMVGE----------------NTEAVG 150
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ + LE++ +LT A E +DPV+GR ++I+R+ QIL RRTKNNP L+G
Sbjct: 151 VRSGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRISQIERVTQILGRRTKNNPCLIG 210
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA RI +VP + K +++LDMGLL+AG K RGE E R+ L+ EI
Sbjct: 211 EPGVGKTAVAEGLAQRIASGDVPETIEGKNVVTLDMGLLVAGTKYRGEFEERLKKLMEEI 270
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ D+IL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 271 KQADDIILVIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEYRKH 325
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPVL+ EP+ E+ + IL GLRE+YE HH ++T EA+ AA LS +YIS
Sbjct: 326 IEKDPALERRFQPVLVPEPTVEETIEILRGLRERYEIHHKLRYTDEALIAAAQLSYQYIS 385
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGS 557
DR+LPDKAIDL+DEAGS+ R K Q L + + +E+R V + +E V+G
Sbjct: 386 DRFLPDKAIDLIDEAGSKV------RLKHAQ---LPEEAKELDKELRAVTKEKNEAVRGQ 436
Query: 558 RL----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPD----DIAAVASLWSGIPV 609
+ D + +E + E VGP DI + S W+GIPV
Sbjct: 437 DFEKAGELRDREMELKAQISAFIEKDKEKVKAESETGDVGPTVEEADIQQIVSAWTGIPV 496
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+++++DE L+ +E+ L RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTG
Sbjct: 497 EKVSSDESDRLLKMEDTLHNRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTG 556
Query: 670 VGKTELAKSLAACYFGS 686
VGK+ELAKSLA+ YFGS
Sbjct: 557 VGKSELAKSLASYYFGS 573
>gi|7576225|emb|CAB87915.1| AtClpC [Arabidopsis thaliana]
Length = 952
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 272/616 (44%), Positives = 389/616 (63%), Gaps = 51/616 (8%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKARE 139
++FERFTE+A+K ++ SQ EA+ LG + V T+ +LLGLI E +GI +
Sbjct: 113 AMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEG--------TGIAAKVLKS 164
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 165 MGINLKDS--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHL 221
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A RVL+ LG D +++ V R+ GE N ++
Sbjct: 222 LLGLLREGEGVAARVLENLGADPSNIR-TQVIRMVGE---------------NNEVTASV 265
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
S ++ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+GE
Sbjct: 266 GGGSSG-NSKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERMVQILARRTKNNPCLIGE 324
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA RI +VP + K +++LDMGLL+AG K RGE E R+ L+ EI+
Sbjct: 325 PGVGKTAIAEGLAQRIASGDVPETIEGKTVITLDMGLLVAGTKYRGEFEERLKKLMEEIR 384
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
+S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 385 QSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTIDEYRKHI 439
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPV + EP+ E+A++IL GLRE+YE HH ++T EA+ AA LS +YISD
Sbjct: 440 EKDPALERRFQPVKVPEPTVEEAIQILQGLRERYEIHHKLRYTDEALVAAAQLSHQYISD 499
Query: 500 RYLPDKAIDLVDEAGSRA---HIELFK--RKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
R+LPDKAIDL+DEAGSR H +L + R+ E+Q ++K ++ +R+ E+
Sbjct: 500 RFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKQLRQITKEKNEA---VRSQD--FEMA 554
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIPVQ 610
R + ++ A + + V+ A ++E GP DI + + W+GIPV+
Sbjct: 555 GSHRDREIELKAEIAN----VLSRGKEVAKAENEAEEGGPTVTESDIQHIVATWTGIPVE 610
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++++DE L+ +E+ L RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGV
Sbjct: 611 KVSSDESSRLLQMEQTLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGV 670
Query: 671 GKTELAKSLAACYFGS 686
GK+ELAK+LAA YFGS
Sbjct: 671 GKSELAKALAAYYFGS 686
>gi|334136731|ref|ZP_08510188.1| negative regulator of genetic competence ClpC/MecB [Paenibacillus
sp. HGF7]
gi|333605752|gb|EGL17109.1| negative regulator of genetic competence ClpC/MecB [Paenibacillus
sp. HGF7]
Length = 815
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/620 (42%), Positives = 375/620 (60%), Gaps = 72/620 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLSLAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALVALGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVESLI--------------GRGQEQPSNIAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G ++ V N SG
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLGS----------SEVVSSNHGSGN 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 157 N--VNTP------TLDSLARDLTAIAKEGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQKIINNEIPETLKDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +P+ E+A++IL GLR++YEAHH K T EAI AV LS RYI
Sbjct: 324 IEKDAALERRFQPITVDQPTPEEAIQILHGLRDRYEAHHRVKITDEAIEEAVKLSDRYIP 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + + + PP +++ + + ++ R
Sbjct: 384 DRFLPDKAIDLIDEASSKVRLHSY-----------TVPP--------SLKELEQKLENIR 424
Query: 559 LKYDDVV--------ASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWS 605
+ D V AS+ DT + + E + +D E V PDDIA V + W+
Sbjct: 425 KEKDAAVQSQEFEKAASLRDTEQKLREELDSTKNDWKEKQGRMDTEVTPDDIAQVVASWT 484
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV+++ +E L+ +E+ L RVIGQ+EAV A+SRA++R+R GLKDP RP + +F
Sbjct: 485 GIPVRKLAEEETERLLKMEDILHNRVIGQEEAVKAVSRAIRRARAGLKDPKRPMGSFIFL 544
Query: 666 GPTGVGKTELAKSLAACYFG 685
GPTGVGKTELA++LA FG
Sbjct: 545 GPTGVGKTELARALAESLFG 564
>gi|302790788|ref|XP_002977161.1| hypothetical protein SELMODRAFT_176012 [Selaginella moellendorffii]
gi|300155137|gb|EFJ21770.1| hypothetical protein SELMODRAFT_176012 [Selaginella moellendorffii]
Length = 901
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 272/620 (43%), Positives = 384/620 (61%), Gaps = 55/620 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ +
Sbjct: 64 VVAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLK 123
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
+AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 124 EARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 170
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D ++ V R+ GE ++
Sbjct: 171 SEHLLLGLLREGEGVAARVLENLGADPGNIR-TQVIRMVGE----------------STE 213
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP
Sbjct: 214 AVGASVGGGSSSNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPC 273
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 274 LIGEPGVGKTAIAEGLAQRIATGDVPETIEGKKVVTLDMGLLVAGTKYRGEFEERLKKLM 333
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI++S D+IL IDEVHTLIG+G +G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 334 EEIKQSDDIILVIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQCIGATTIDEY 388
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T EA+ AA LS +
Sbjct: 389 RKHIEKDPALERRFQPVNVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQ 448
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVV 554
YISDR+LPDKAIDL+DEAGSR + + L + D +E+R + + +E V
Sbjct: 449 YISDRFLPDKAIDLIDEAGSRVRL---------RHAQLPEEARDLDKELRQITKEKNEAV 499
Query: 555 QGS--------RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
+G R + ++ A + +E E S + +V DI + S W+G
Sbjct: 500 RGQDFEKAGELRDREMELKAQISAITEKGKEKSKAETEAGETGPLVTEADIQQIVSAWTG 559
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV++++ DE L+ +EE L +RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F G
Sbjct: 560 IPVEKVSTDESDRLMKMEETLHQRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 619
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGK+ELAK+LAA YFGS
Sbjct: 620 PTGVGKSELAKALAAYYFGS 639
>gi|336112769|ref|YP_004567536.1| ATPase AAA-2 domain-containing protein [Bacillus coagulans 2-6]
gi|335366199|gb|AEH52150.1| ATPase AAA-2 domain protein [Bacillus coagulans 2-6]
Length = 816
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 267/622 (42%), Positives = 367/622 (59%), Gaps = 77/622 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + SQ EA L + + T+H+LLGL+ E G++ +K +
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRLKHNNIGTEHILLGLVREGEGIAAKALYGLGLSAEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V ++ G+ S + ++ K+V E +++ +R G++++ EH
Sbjct: 62 EEVETLI------------GNGQEISQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N + L G E S+ G
Sbjct: 108 ILLGLIREGEGVAARVLTNLGVSLNKARQQVLQLL---------------GNSEASVQGG 152
Query: 259 TAA-LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+AA + +P L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+
Sbjct: 153 SAASVSTP------TLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI 206
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ E
Sbjct: 207 GEPGVGKTAIAEGLAQQIVHNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDE 266
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 267 IRQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRK 321
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EP+ +++++IL GLR++YEAHH T EAI AAV LS RYI
Sbjct: 322 YIEKDAALERRFQPIQVDEPTIDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYI 381
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKR--------------KKEQQTCILSKPPDDYWQE 543
+DR+LPDKAIDL+DEAGS+ + F +KE+ + S QE
Sbjct: 382 ADRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELELKLEEVRKEKDAAVQS-------QE 434
Query: 544 IRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
A+ + Q R + ++ S A E + V DDIA V S
Sbjct: 435 FEKAAALRDTEQKLREQLEETKKSW-------------KAKQGRENSEVTVDDIALVVSS 481
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+G+PV ++ E L+ LEE L RVIGQ+EAV A+++AV+R+R GLKDP RP + +
Sbjct: 482 WTGVPVTKLAQTETERLLHLEEILHSRVIGQEEAVLAVAKAVRRARAGLKDPKRPIGSFI 541
Query: 664 FCGPTGVGKTELAKSLAACYFG 685
F GPTGVGKTELA++LA FG
Sbjct: 542 FLGPTGVGKTELARALAEAMFG 563
>gi|297819504|ref|XP_002877635.1| AtClpC [Arabidopsis lyrata subsp. lyrata]
gi|297323473|gb|EFH53894.1| AtClpC [Arabidopsis lyrata subsp. lyrata]
Length = 953
Score = 457 bits (1176), Expect = e-125, Method: Compositional matrix adjust.
Identities = 269/613 (43%), Positives = 385/613 (62%), Gaps = 45/613 (7%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKARE 139
++FERFTE+A+K ++ SQ EA+ LG + V T+ +LLGLI E +GI +
Sbjct: 113 AMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEG--------TGIAAKVLKS 164
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 165 MGINLKDS--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHL 221
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A RVL+ LG D +++ V R+ GE N ++
Sbjct: 222 LLGLLREGEGVAARVLENLGADPSNIR-TQVIRMVGE---------------NNEVTASV 265
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
S ++ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+GE
Sbjct: 266 GGGSSG-NSKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILARRTKNNPCLIGE 324
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA RI +VP + K +++LDMGLL+AG K RGE E R+ L+ EI+
Sbjct: 325 PGVGKTAIAEGLAQRIASGDVPETIEGKTVITLDMGLLVAGTKYRGEFEERLKKLMEEIR 384
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
+S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 385 QSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHI 439
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPV + EP+ E+A++IL GLRE+YE HH ++T EA+ AA LS +YISD
Sbjct: 440 EKDPALERRFQPVKVPEPTVEEAIQILHGLRERYEIHHKLRYTDEALVAAAQLSHQYISD 499
Query: 500 RYLPDKAIDLVDEAGSR-----AHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
R+LPDKAIDL+DEAGSR A + R+ E+Q ++K ++ V+ +
Sbjct: 500 RFLPDKAIDLIDEAGSRVRLRHAQVPEEARELEKQLRQITKEKNE------AVRGQDFEM 553
Query: 555 QGS-RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
GS R + ++ A + + + E + ++ V DI + + W+GIPV++++
Sbjct: 554 AGSHRDREIELRAEIANVLALGKEVAKAENEAEEGGPTVTESDIQHIVATWTGIPVEKVS 613
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+DE L+ +E+ L RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+
Sbjct: 614 SDESSRLLQMEQTLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKS 673
Query: 674 ELAKSLAACYFGS 686
ELAK+LAA YFGS
Sbjct: 674 ELAKALAAYYFGS 686
>gi|335039209|ref|ZP_08532387.1| ATPase AAA-2 domain protein [Caldalkalibacillus thermarum TA2.A1]
gi|334180907|gb|EGL83494.1| ATPase AAA-2 domain protein [Caldalkalibacillus thermarum TA2.A1]
Length = 811
Score = 457 bits (1176), Expect = e-125, Method: Compositional matrix adjust.
Identities = 266/616 (43%), Positives = 371/616 (60%), Gaps = 61/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID--KAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E + +D K R
Sbjct: 2 MFGRFTERAQKVLALAQEEAMRLGHNNIGTEHILLGLVREGEGIAAKALQALNLDMEKIR 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ G+ + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 KEVETLI--------------GRGTQTTDNIHYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL LGV +N A V +L G P +G
Sbjct: 108 VLLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGSNEAMAATPQGGQG------GAS 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T L S R DLTA A + +DPVIGR+ EI+R+IQ+L RRTKNNP+L+G
Sbjct: 161 TPTLDSLAR-----------DLTAIAKNDELDPVIGRDKEIERVIQVLSRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 210 EPGVGKTAIAEGLAQRIVNNEIPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 270 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+++ PS ED + IL GLR++YEAHH K T EAI AV LS RYI+
Sbjct: 325 IEKDAALERRFQPIMVDPPSIEDTILILRGLRDRYEAHHRVKITDEAIEQAVKLSDRYIT 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQ 555
DR+LPDKAIDL+DEA S+ ++ + + PP+ + Q++ V+ + VQ
Sbjct: 385 DRFLPDKAIDLIDEAASKVRLKSY-----------TVPPNLKELEQKLEEVRKEKDAAVQ 433
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQ 610
+ AS+ DT + + E + ++ E + V +DIA + S W+GIPV+
Sbjct: 434 SQEFEK---AASLRDTEQKLREELEKTKNEWKEKQGQTDSEVTAEDIADIVSSWTGIPVK 490
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++ +E L+ +EE L +RVIGQDEAV AIS+A++R+R GLKDP RP + +F GPTGV
Sbjct: 491 KLAQEESERLLNMEEILHERVIGQDEAVKAISKAIRRARAGLKDPKRPIGSFIFLGPTGV 550
Query: 671 GKTELAKSLAACYFGS 686
GKTELAK+LA FG
Sbjct: 551 GKTELAKALAESLFGD 566
>gi|338813698|ref|ZP_08625791.1| clpc ATPase [Acetonema longum DSM 6540]
gi|337274331|gb|EGO62875.1| clpc ATPase [Acetonema longum DSM 6540]
Length = 811
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/611 (43%), Positives = 373/611 (61%), Gaps = 51/611 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ RFTERA KA+ +++EA + T+HLLLGLI E G KA EA
Sbjct: 1 MLNRFTERAQKALELARQEAIRFRHGYIGTEHLLLGLIKE---------GGGVAAKALEA 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + T + + A G+ ++ + +K+V E AV++++ G+N++ EH+
Sbjct: 52 L-DVDAETVQEQIEQAIGYGQ--EQPGEVVLTPRSKKVLELAVQHAQQMGHNYVGTEHLL 108
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL + DG A +VL LG D+ + A + L G +ISG+
Sbjct: 109 LGLISEGDGVAAQVLVSLGADLQAVQAKVIELLGG-----------------FAISGQAP 151
Query: 261 ALKSPGRTRAS--ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
K+PG+ +++ A+ +F DL A E IDPVIGR EI+R+IQIL RRTKNNP+L+G
Sbjct: 152 QPKAPGQGQSTTPAVNEFGRDLNQLAQEGKIDPVIGRNAEIERVIQILSRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA +IV+ VP L KR++SL+M ++AG+K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAVAEGLAQQIVEGRVPEILRDKRVVSLNMASIVAGSKYRGEFEERLKKVMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G +D +N+LKPSL RGELQ I +TT DE++
Sbjct: 272 RQAGNIILFIDELHTLIGAGAA-----EGAIDAANILKPSLARGELQVIGATTLDEYKKH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+++ EP+ EDA+ IL GLR++YEA H + T EAI+AAV LS RYI+
Sbjct: 327 IEKDAALERRFQPIIVGEPTVEDAIAILRGLRDRYEAFHKAQITDEAIDAAVKLSHRYIA 386
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ ++ F S PPD E R + E S+
Sbjct: 387 DRFLPDKAIDLMDEAASKVRLQAF-----------SLPPDVKEIEQRLERISLEKEAASK 435
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASD----DDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ + A + D + V E + E VV +DIA V + W+GIPV+++
Sbjct: 436 AQEFEKAAQLRDEEKQVREELETRQKEWKHKGGEQVVVTAEDIAQVVASWTGIPVKKLAE 495
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
+E L+ LE+ L RVIGQ+EAV+A+++AV+R+R GLKDP RP + +F GPTGVGKTE
Sbjct: 496 EESERLLKLEQVLHNRVIGQEEAVSAVAKAVRRARSGLKDPKRPIGSFIFLGPTGVGKTE 555
Query: 675 LAKSLAACYFG 685
LA++LA FG
Sbjct: 556 LARALAEAMFG 566
>gi|449470390|ref|XP_004152900.1| PREDICTED: chaperone protein ClpC, chloroplastic-like [Cucumis
sativus]
gi|449505877|ref|XP_004162592.1| PREDICTED: chaperone protein ClpC, chloroplastic-like [Cucumis
sativus]
Length = 924
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 273/614 (44%), Positives = 383/614 (62%), Gaps = 47/614 (7%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKA 137
++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + A
Sbjct: 91 AMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDA 150
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E ++E +R G+N+I E
Sbjct: 151 RVEVEKII------------GRGGGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSE 197
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LG D ++ V R+ GE ++ +
Sbjct: 198 HLLLGLLREGEGVAARVLENLGADPANIR-TQVIRMVGE----------------STEAV 240
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+
Sbjct: 241 GAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLI 300
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ E
Sbjct: 301 GEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 360
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 361 IKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRK 415
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EPS ++ ++IL GLRE+YE HH ++T EA+ AA LS +YI
Sbjct: 416 HIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALEAAAQLSYQYI 475
Query: 498 SDRYLPDKAIDLVDEAGSRA---HIELFKRKKEQQTCI--LSKPPDDYWQEIRTVQAMHE 552
SDR+LPDKAIDL+DEAGSR H +L + KE + + ++K +D + +A
Sbjct: 476 SDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKEVEKELRQITKEKNDAVRSQDFEKAGE- 534
Query: 553 VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
++ ++ ++++ D + E S + D VV DI + S W+GIPV+++
Sbjct: 535 -LRDREMELKAKISALIDKGK---EMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKV 590
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+ DE L+ +EE L +RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK
Sbjct: 591 STDESDRLLKMEETLHRRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGK 650
Query: 673 TELAKSLAACYFGS 686
+ELAK+LAA YFGS
Sbjct: 651 SELAKALAAYYFGS 664
>gi|365157357|ref|ZP_09353630.1| chaperone ClpB [Bacillus smithii 7_3_47FAA]
gi|363625258|gb|EHL76300.1| chaperone ClpB [Bacillus smithii 7_3_47FAA]
Length = 811
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 268/612 (43%), Positives = 367/612 (59%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + S + GK A + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LYGLGLSPEKIQNEVENLIGKGQGVAQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LG+ +N A V +L G G SG +A
Sbjct: 110 LGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLGSNETNGH------------ASGSSA 156
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLTA A + +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 157 HANTP------TLDSLARDLTAIARDGKLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E++++IL GLR++YEAHH T EAI AAV LS RYISDR
Sbjct: 326 KDAALERRFQPIQVDEPTIEESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQAMHEV 553
+LPDKAIDL+DEAGS+ + F ++ EQ+ + K D QE ++ +
Sbjct: 386 FLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLEEIRKEKDAAVQSQEFEKAASLRDA 445
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
Q R + ++ S + E + V +DIA V S W+GIPV ++
Sbjct: 446 EQKLREQLEETKKSWKEKQ-------------GKENSEVTVEDIATVVSSWTGIPVSKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L RVIGQ+EAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETERLLNLEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|399213|sp|P31542.1|CLPAB_SOLLC RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA
homolog CD4B, chloroplastic; Flags: Precursor
gi|170435|gb|AAA34161.1| ATP-dependent protease (CD4B) [Solanum lycopersicum]
Length = 923
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 279/623 (44%), Positives = 387/623 (62%), Gaps = 54/623 (8%)
Query: 74 KIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-G 131
+ +P ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G
Sbjct: 85 RFVP-KAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMG 143
Query: 132 ITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGY 191
I + AR V I +G F A ++PF+ KRV E ++E +R G+
Sbjct: 144 INLKDARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGH 190
Query: 192 NFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVR 251
N+I EH+ LGL +G A RVL+ LG D +++ V R+ GE + A G
Sbjct: 191 NYIGSEHLLLGLLREGEGVAARVLENLGADPSNIR-TQVIRMVGE-------SNEAVGA- 241
Query: 252 ENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTK 311
S+ G T+ K P LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTK
Sbjct: 242 --SVGGGTSGQKMP------TLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTK 293
Query: 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV 371
NNP L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+
Sbjct: 294 NNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERL 353
Query: 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431
L+ EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT
Sbjct: 354 KKLMEEIKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATT 408
Query: 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491
DE+R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T E + AA
Sbjct: 409 LDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEDLVAAAQ 468
Query: 492 LSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH 551
LS +YISDR+LPDKAIDL+DEAGSR R + Q +K + ++I + +
Sbjct: 469 LSYQYISDRFLPDKAIDLIDEAGSRV------RLRHAQLPEEAKELEKELRQI--TKEKN 520
Query: 552 EVVQGS--------RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
E V+G R + D+ A + + E S + D +V DI + S
Sbjct: 521 EAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSS 580
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIPV++++ DE L+ +EE L R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +
Sbjct: 581 WTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFI 640
Query: 664 FCGPTGVGKTELAKSLAACYFGS 686
F GPTGVGK+ELAK+LAA YFGS
Sbjct: 641 FSGPTGVGKSELAKALAAYYFGS 663
>gi|283794929|ref|YP_003359282.1| Clp protease ATP binding subunit [Cryptomonas paramecium]
gi|253981901|gb|ACT46818.1| Clp protease ATP binding subunit [Cryptomonas paramecium]
Length = 817
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 268/615 (43%), Positives = 376/615 (61%), Gaps = 58/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+F+RFTE+++K ++ +Q EA+ + + V T+ LLLG+I E L+S GITI AR
Sbjct: 1 MFDRFTEKSIKVIMLAQEEARRMNHNFVGTEQLLLGIIVEGTGVAAKVLKSMGITIKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V + +G S A +PF+ K+V E+A+E SR G+N+I EH
Sbjct: 61 AEV------------EKLVGRGAGMS-AVDIPFTPRAKKVLESALEESRMLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +DG A +VL+ L +D+ + + R G+ E I G
Sbjct: 108 ILLGLLEDEDGVATQVLESLELDLTDIRT-EIFRFLGDQI-------------ELLIGG- 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ R R L+++ DLT +A++ +DPVIGR EI+R+IQIL RR+KNNPIL+G
Sbjct: 153 -----AQSRGRIPTLDEYGTDLTQKAADGKLDPVIGRFKEIERVIQILGRRSKNNPILIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA RIV +VP L K++++LD+GLL+AG K RGE E R+ +I EI
Sbjct: 208 EPGVGKTAVAEGLAQRIVYKDVPDILEDKKVVTLDIGLLVAGTKYRGEFEERLKRVIDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + +VIL IDEVHTLIG+G +D +N+LKP+L RGE+QCI +TT +E R
Sbjct: 268 KATNNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGEMQCIGATTLEEFRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV+++EPS V IL GLR+KYE HH + EAI+AA + +YI+
Sbjct: 323 IEKDPALERRFQPVIVNEPSVTQTVEILFGLRDKYEKHHKLVISDEAISAAATFADQYIA 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRT-------VQAMH 551
DR+LPDKAIDL+DEAGSR R Q +K D +EI T ++ H
Sbjct: 383 DRFLPDKAIDLLDEAGSRV------RLLHSQIPPAAKELDKELREILTQKDDFVRMEDFH 436
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
R + ++ A M V++++ E +VV +DIA + + W+GIPVQ+
Sbjct: 437 SAAN-LRDRETEIRAQMA----AVIQANKGEWVPAPEISVVTEEDIAQIVASWTGIPVQK 491
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L+ +EE L R+IGQDEAV A+++A+KR+RVG+K+PNRP A+ +F GPTGVG
Sbjct: 492 MTRTETEKLLQMEETLHSRIIGQDEAVTAVAKAIKRARVGMKNPNRPIASFIFSGPTGVG 551
Query: 672 KTELAKSLAACYFGS 686
KTEL K+LA+ +FGS
Sbjct: 552 KTELTKALASYFFGS 566
>gi|443320270|ref|ZP_21049382.1| ATPase with chaperone activity, ATP-binding subunit [Gloeocapsa sp.
PCC 73106]
gi|442790005|gb|ELR99626.1| ATPase with chaperone activity, ATP-binding subunit [Gloeocapsa sp.
PCC 73106]
Length = 782
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 264/610 (43%), Positives = 366/610 (60%), Gaps = 93/610 (15%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL--ESGITIDKAR 138
+FE FTE+A+++V+ +Q EA+ G ++V ++HLLLGLI E+ G + E GI ++K R
Sbjct: 1 MFEYFTEKAIRSVMLAQEEARRSGHNLVGSEHLLLGLIGENTSIAGVVLREYGIKLEKTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E + + ++G FS + +PF+ K +FE + + ++ G N+IAPEH
Sbjct: 61 EII------------NGLVSKGSGFSPS-NIPFTPKVKSIFEQSFQEAQKLGTNYIAPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L D A + L G++ L A+ + E+ G +G+R+ S
Sbjct: 108 ILLATIKDQDAVATKALTSQGINSEELR-TAIIKKAAEMVPVG------QGIRDES---- 156
Query: 259 TAALKSPGRTRAS--ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
RT +S L+ F +LT A+E IDP+ GR EI R IQIL RRTKNNPIL
Sbjct: 157 --------RTNSSPIKLKDFSKNLTELAAEGKIDPITGRNEEIARTIQILGRRTKNNPIL 208
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGK+AIAEGLA RIV +VP LL K+++SLDMG L+AG + RG+ E R+ +I+
Sbjct: 209 VGEPGVGKSAIAEGLAQRIVAKDVPETLLDKQVISLDMGSLLAGTRFRGDFEERLKAIIN 268
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
E++ S ++IL IDE+HT++G+G G +D +N+LKPSL RGELQC+ +TT DE+R
Sbjct: 269 EVRNSDNIILVIDEIHTIVGAGATG-----GAMDAANMLKPSLARGELQCLGTTTLDEYR 323
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQ VLI EPS ED + IL GLR+ YE H K+T EAI AA LS RY
Sbjct: 324 QYIEKDPALERRFQKVLIKEPSVEDTLEILQGLRKTYEDFHKVKYTDEAIAAAAQLSKRY 383
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQG 556
ISDRYLPDKAIDL+DEAGSR H++ +V+A E+V
Sbjct: 384 ISDRYLPDKAIDLLDEAGSRLHLK------------------------HSVRAEVEMV-- 417
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
I +S +P VVG ++IA + W+GIPVQ++T E
Sbjct: 418 -----------------INPQSLVP---------VVGKEEIAEILCAWTGIPVQKMTESE 451
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L++ LE +L++RVIGQ EAV A++RA++R+R GLK P RP A++ F GPTGVGKTEL+
Sbjct: 452 SELVINLEAKLQERVIGQTEAVKAVARALRRTRAGLKAPQRPIASLFFSGPTGVGKTELS 511
Query: 677 KSLAACYFGS 686
K++A FG+
Sbjct: 512 KAIAQAMFGA 521
>gi|146297365|ref|YP_001181136.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410941|gb|ABP67945.1| ATPase AAA-2 domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 830
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 280/638 (43%), Positives = 380/638 (59%), Gaps = 67/638 (10%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITIDKAR 138
RFTERA KA++ +Q+ A LG + V T+HLLLGLI R G L+S G+T +K
Sbjct: 5 RFTERAEKAIMLAQQSAAELGHNYVGTEHLLLGLI---REGGGIAARVLQSQGVTEEKVI 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + ++ +G F+ TKRVFE A +R G +I+ EH
Sbjct: 62 DEI------------EELIGRGDYQLPQPPTGFTPRTKRVFEIAFMEARRLGSTYISTEH 109
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKE--GREPSLAKGVRENSIS 256
I L + + A R+L LGVD L + +L E AK G P + I+
Sbjct: 110 ILLAIMREGESVAVRILMDLGVDPQKLFE-EIMKLLNEDAKNMGGVSP-------QQQIN 161
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
+T L QF DLT A E IDPVIGRE EI+R+IQIL RRTKNNP L
Sbjct: 162 FQT--------QNTPTLNQFSRDLTQLALEGKIDPVIGREKEIERVIQILSRRTKNNPCL 213
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAI EGLA +IV+ VP L +KR+++LD+ ++AG+K RGE E R+ +
Sbjct: 214 IGEPGVGKTAIVEGLAQKIVEGNVPELLRNKRVVALDLSAMVAGSKFRGEFEERLKKAME 273
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
E++K+G+VILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 274 EVRKAGNVILFIDEMHTIIGAGAAE-----GAIDASNILKPALARGEIQVIGATTLDEYR 328
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+L+ EP+ E+ V+IL GLR+KYEAHH K T EAI AAV LS +Y
Sbjct: 329 KHIEKDAALERRFQPILVGEPTPEETVQILKGLRDKYEAHHGVKITDEAIKAAVDLSTKY 388
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQG 556
I+DRYLPDKAIDL+DEA SR ++++ + PP E + + E +
Sbjct: 389 ITDRYLPDKAIDLIDEAASRVRLKMY-----------TLPPHVKEHEEKIEKLEKEKEEA 437
Query: 557 SRLKYDDVVASMGDTSEIV-----VESSLPSASDDDEPA--VVGPDDIAAVASLWSGIPV 609
RL+ + A + D EI+ +E S ++D + A +V +DIA + + W+GIPV
Sbjct: 438 IRLQEYEKAAKIRD--EIIKLRQELEKVKNSWTNDQQKAQPIVTENDIAYIVASWTGIPV 495
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T DE L+ LEE L KRV+GQDEAV A++RA++R RVGLKDP RP + +F GPTG
Sbjct: 496 NKLTEDESERLLKLEEVLHKRVVGQDEAVRAVARAIRRGRVGLKDPKRPIGSFIFLGPTG 555
Query: 670 VGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
VGKTEL ++LA FG+ +RI + FN K+
Sbjct: 556 VGKTELCRALAEALFGTEDALIRIDMSEYMEKFNVSKL 593
>gi|254425327|ref|ZP_05039045.1| ATPase, AAA family [Synechococcus sp. PCC 7335]
gi|196192816|gb|EDX87780.1| ATPase, AAA family [Synechococcus sp. PCC 7335]
Length = 822
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 272/618 (44%), Positives = 373/618 (60%), Gaps = 63/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL--ESGITIDKAR 138
+FE FT A+ ++ +Q EA+ LG + V ++ LLLG+I E+ + E GI + AR
Sbjct: 1 MFEHFTNTAIAVIMQAQEEARRLGHNFVGSEQLLLGIIKENTSIAAKVLDEFGINLANAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V SI + + ++PF+ K+VFE A + +R + +I PEH
Sbjct: 61 TEVESIIGRGSG-------------NGPVEIPFTPKVKQVFEQAFQEARKLDHPYIEPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ L L + A RV+ L VD + V + R+ GE + V + G
Sbjct: 108 LLLSLTQNSESVAYRVIANLDVDPEKIR-VQLVRVIGE----------STPVASGRVGGS 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
K ++ +S L ++ DLT A+E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 157 Q---KKERKSDSSVLTEYGTDLTEVAAEGKLDPVIGRRQEIERVVQVLGRRTKNNPVLVG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV +VP L+ KR++SLDMGLL++G + RG+ E R+T +I E+
Sbjct: 214 EPGVGKTAIAEGLAQRIVNQDVPEALIDKRVISLDMGLLVSGTRFRGDFEERITQVIDEV 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+KS DVIL IDE+HTL+G+G++ +G G+D +NLLKP+L RGE+QCI +TT DE+R
Sbjct: 274 RKSQDVILVIDEIHTLVGAGSL----EG-GMDAANLLKPALARGEMQCIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV I+ PS ED V IL GLR +YE H T EA+ AA LS RYI+
Sbjct: 329 IEKDAALERRFQPVTIAPPSVEDTVEILYGLRSRYEQFHRLNITDEAVEAAATLSDRYIT 388
Query: 499 DRYLPDKAIDLVDEAGSRAHI---------ELFKRKKEQQTCILSK-PPDDYWQEIRTVQ 548
DR+LPDKAIDL+DEAGSR + EL ++ Q IL DY Q + Q
Sbjct: 389 DRHLPDKAIDLIDEAGSRVRLRYSRNIPASELRSELRQVQKNILEAVQQQDYDQAVTLRQ 448
Query: 549 AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ Q K D + GD S I + P SD +DIA + S W+G+P
Sbjct: 449 KESALTQ----KIQDTLE--GDVSII----NQPEVSD---------EDIADIVSSWTGVP 489
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V IT E +++ LE+ L +RV+GQDEAV A+SRAV+R+RVGL+ +RP A+++F GPT
Sbjct: 490 VNAITETESAMMMHLEQTLHERVVGQDEAVEAVSRAVRRARVGLRGLDRPIASLVFSGPT 549
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAK+LA+ FGS
Sbjct: 550 GVGKTELAKALASAVFGS 567
>gi|218244917|ref|YP_002370288.1| ATPase AAA [Cyanothece sp. PCC 8801]
gi|218165395|gb|ACK64132.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 8801]
Length = 789
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/629 (41%), Positives = 373/629 (59%), Gaps = 80/629 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL--ESGITIDKAR 138
+FE FT++A+KA++ SQ EA+ G+++V T+HLLLGLI E + E G+T+ + R
Sbjct: 1 MFEYFTDKAIKAIMLSQEEARRTGQNLVGTEHLLLGLIGEGTSITSMVLEEFGLTLAQTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ D +G FS A +PF+ KR+ E A SR G ++ PEH
Sbjct: 61 YTI------------DQIRGKGGGFSPA-NIPFTPIVKRILEQAFNNSRQEGDRYVNPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L L + + A +VL GV+ + L + ++ + EP + G
Sbjct: 108 ILLALISDSNTVAAKVLNLQGVEPSQLRISLLKKIAEQ------EPVTV------AARGN 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ SP RT+ + L+ F ++LT RA E +DP++GR E++R+IQIL RRTKNNP+L+G
Sbjct: 156 ESIFDSPPRTQ-TRLQDFGINLTQRAKEGKLDPMVGRNQELERVIQILGRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV ++P L K++++LDM LL+AG + RGE E R+ ++ E+
Sbjct: 215 EPGVGKTAIAEGLAQRIVNKDLPETLQDKQVIALDMTLLVAGTRFRGEFEERLKAIVEEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++IL IDE+HTL+G+G +G G LD +NLLKP+L RGELQC+ +TT DE+R
Sbjct: 275 RQAGNIILVIDEIHTLVGAGALG----GV-LDAANLLKPALARGELQCLGTTTLDEYRQY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS + + IL GLR++YEA+H KF A+ AA L+ RYIS
Sbjct: 330 IERDAALERRFQPVMVGEPSVTETIEILYGLRKEYEAYHKVKFEDCALEAAATLADRYIS 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR H+ R
Sbjct: 390 DRFLPDKAIDLIDEAGSRIHL--------------------------------------R 411
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
V + GD + SL D P VV +DIA + + W+GIP+ +++ E
Sbjct: 412 HSLQTKVTTSGDNN----SQSLVINPDSLVP-VVDAEDIAQIVTAWTGIPINKLSETESE 466
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ LE QL + +IGQ+EAV A+SRAV+R+RVGLK+P+RP A+ +F GPTGVGKTEL K+
Sbjct: 467 SLLHLEAQLHESIIGQEEAVKAVSRAVRRARVGLKNPHRPVASFIFAGPTGVGKTELTKA 526
Query: 679 LAACYFGS----VRIHYLFFPSPFNSVKV 703
LA FGS +R+ F P K+
Sbjct: 527 LARYLFGSEEAMIRLDMSEFMEPHTVSKL 555
>gi|337751755|ref|YP_004645917.1| protein ClpC [Paenibacillus mucilaginosus KNP414]
gi|336302944|gb|AEI46047.1| ClpC [Paenibacillus mucilaginosus KNP414]
Length = 814
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 266/612 (43%), Positives = 370/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLSLAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALIALGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVESLI--------------GRGQEQPSNIAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G + E P+ G
Sbjct: 108 ILLGLIREGEGVAARVLGNLGVSLNK-ARQQVLQLLG--SSEVVSPN----------HGN 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A + +P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 155 PANVNTP------TLDGLARDLTAYAKEGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQKIVANEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+++LFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIVLFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS ++A++IL GLR++YEAHH K T EAI AV LS RYI
Sbjct: 324 IEKDAALERRFQPITVDQPSPDEAIQILHGLRDRYEAHHRVKITDEAIEQAVKLSDRYIP 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + + + PPD E R E +
Sbjct: 384 DRFLPDKAIDLIDEASSKVRLRSY-----------TVPPDLKKLESRLEDIRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + E + ++ E + V PDDIA V + W+GIPV ++
Sbjct: 433 SQEFEKAASLRDTEQKLREELDSTKNEWKEKQGRTDSEVTPDDIAQVVASWTGIPVVKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E L RVIGQDEAV A+SRA++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETQRLLQMESILHDRVIGQDEAVKAVSRAIRRARAGLKDPKRPMGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESLFG 564
>gi|452910065|ref|ZP_21958747.1| ATP-dependent Clp protease [Kocuria palustris PEL]
gi|452834683|gb|EME37482.1| ATP-dependent Clp protease [Kocuria palustris PEL]
Length = 884
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 266/620 (42%), Positives = 374/620 (60%), Gaps = 62/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI E+ GIT++ AR
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHLLLGLIHENEGVAAKALDSLGITLNGAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I Q P + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQDII----------GPGQQAP---SGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LG+ +G A +VL +LG + + + + + G G E +G
Sbjct: 108 ILLGIIRAGEGVAAQVLTKLGTEPQKVRSTVLDLISG----------YQSGGEEKETAGA 157
Query: 259 TAALKSPGRTRASA-LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A G SA L+QF +LTA A E +DPVIGR E++R++Q+L RRTKNNP+L+
Sbjct: 158 GARTSGEGTPAGSAVLDQFGRNLTAAARESQLDPVIGRAREMERVMQVLSRRTKNNPVLI 217
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ +VP L K + +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 218 GEPGVGKTAVVEGLAQAIVRGDVPETLKDKHLYTLDLGSLVAGSRYRGDFEERLKKVLKE 277
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 278 IKSRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRK 332
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS+ ++ IL GLR+KYEAHH + EA+ AAVH SARYI
Sbjct: 333 HIEKDAALERRFQPIQVDEPSEAHSIEILKGLRDKYEAHHRVSISDEALEAAVHQSARYI 392
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTV-QAMHEVV 554
SDR+LPDKAIDL+DEAG+R I KR ++ PP+ + + I V QA E +
Sbjct: 393 SDRFLPDKAIDLIDEAGARLRI---KR--------MTAPPEIKELDERIAKVKQAKEEAI 441
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDD---------DEPAVVGPDDIAAVASLWS 605
+G + AS+ D E L S DD D+ A V PD I+ V S +
Sbjct: 442 EGQDYEK---AASLRDQ-----EQKLLSERDDKDTAWREGGDQVAEVTPDVISDVLSAAT 493
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
G+P+ ++T +E L+ +EE+L KRV+GQ+EA+ A+SR+++R+R GLKDP RP + +F
Sbjct: 494 GVPLYRLTDEESGRLIRMEEELHKRVVGQEEAIKALSRSIRRTRAGLKDPKRPGGSFIFA 553
Query: 666 GPTGVGKTELAKSLAACYFG 685
GPTGVGKTELA+SLA FG
Sbjct: 554 GPTGVGKTELARSLAEFLFG 573
>gi|168026983|ref|XP_001766010.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682653|gb|EDQ69069.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 836
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 270/615 (43%), Positives = 377/615 (61%), Gaps = 51/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +GI +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGIAAKVMKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKEA--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LG D +++ V R+ GE N+ +
Sbjct: 110 LGLLREGEGVAARVLENLGADPSNIRT-QVIRMVGE----------------NTEAVGVG 152
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
A + LE++ +LT A E +DPV+GR +I+R+ QIL RRTKNNP L+GE
Sbjct: 153 AGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRVAQIERVTQILGRRTKNNPCLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTA+AEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ EI++
Sbjct: 213 GVGKTAVAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ D+IL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 273 ADDIILVIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEYRKHIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPVL+ EP+ E+ + IL GLRE+YE HH ++T EA+ AA LS +YISDR
Sbjct: 328 KDPALERRFQPVLVPEPTVEETIEILRGLRERYEIHHKLRYTDEALIAAAQLSYQYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRL 559
+LPDKAIDL+DEAGS+ R K Q L + + +E+R V + +E V+G
Sbjct: 388 FLPDKAIDLIDEAGSKV------RLKHAQ---LPEEAKELDKELRAVTKEKNEAVRGQDF 438
Query: 560 ----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIPVQQ 611
+ D + +E + E VGP DI + S W+GIPV++
Sbjct: 439 EKAGELRDREMELKAQISAFIEKDKEQMKAESETGDVGPTVEESDIQQIVSAWTGIPVEK 498
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+++DE L+ +E+ L RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVG
Sbjct: 499 VSSDESDRLLKMEDTLHNRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 558
Query: 672 KTELAKSLAACYFGS 686
K+ELAKSLA+ YFGS
Sbjct: 559 KSELAKSLASYYFGS 573
>gi|307136002|gb|ADN33858.1| ATP-dependent clp protease [Cucumis melo subsp. melo]
Length = 929
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 282/660 (42%), Positives = 404/660 (61%), Gaps = 52/660 (7%)
Query: 37 MSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRR--KIIPISSVFERFTERAVKAVI 94
+ F ++ + Q FHS I +R+R+ + +P ++FERFTE+A+K ++
Sbjct: 53 LRGFNSLDNMLRSGQDFHSKMAIT------ISSRRRKASRCVP-RAMFERFTEKAIKVIM 105
Query: 95 FSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHSTNNQD 152
+Q EA+ LG + V T+ +LLGLI E L+S GI + AR V I
Sbjct: 106 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII------- 158
Query: 153 TDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAG 212
+G F A ++PF+ KRV E ++E +R G+N+I EH+ LGL +G A
Sbjct: 159 -----GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAA 212
Query: 213 RVLKRLG-VDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRAS 271
RVL+ LG + + +L +S + + V E++ + +
Sbjct: 213 RVLENLGKLFIFNLMFYNLSE------------QVIRMVGESTEAVGAGVGGGSSGNKMP 260
Query: 272 ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGL 331
LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+GE GVGKTAIAEGL
Sbjct: 261 TLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGL 320
Query: 332 AIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391
A RI +VP + K++++LDMGLL+AG K RGE E R+ L+ EI++S ++ILFIDEV
Sbjct: 321 AQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEV 380
Query: 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQP 451
HTLIG+G +D +N+LKP+L RGELQCI +TT DE+R EKD AL RRFQP
Sbjct: 381 HTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQP 435
Query: 452 VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511
V + EPS ++ ++IL GLRE+YE HH ++T EA+ AA LS +YISDR+LPDKAIDLVD
Sbjct: 436 VKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVD 495
Query: 512 EAGSRA---HIELFK--RKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVA 566
EAGSR H +L + R+ E++ ++K ++ + +A ++ ++ ++
Sbjct: 496 EAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGE--LRDREMELKTKIS 553
Query: 567 SMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQ 626
++ D + E S + D VV DI + S W+GIPV++++ DE L+ +EE
Sbjct: 554 ALVDKGK---EMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEET 610
Query: 627 LKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
L KRVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+LAA YFGS
Sbjct: 611 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS 670
>gi|15612666|ref|NP_240969.1| class III stress response-related ATPase [Bacillus halodurans
C-125]
gi|10172715|dbj|BAB03822.1| class III stress response-related ATPase [Bacillus halodurans
C-125]
Length = 813
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 268/611 (43%), Positives = 365/611 (59%), Gaps = 52/611 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGLI E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLIREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ + GK A + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LQALGLGPEKIQKEVETLIGKGQDGAKTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L G E S S +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLL---------------GSNETSSSSQQG 154
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ T L+ DLTA A EE +DPVIGR EI+R+IQ+L RRTKNNP+L+GE
Sbjct: 155 GGAANANT--PTLDSLARDLTAIAREEGLDPVIGRSKEIERVIQVLSRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA I+ EVP L +KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 213 GVGKTAIAEGLAQAIIHNEVPETLRNKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 273 AGNVILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ ++EPS +++++IL GLR++YEAHH T EAI AV LS RYI DR
Sbjct: 328 KDAALERRFQPIQVNEPSLDESIQILKGLRDRYEAHHRVTITDEAIEEAVKLSDRYIQDR 387
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E + + E + +
Sbjct: 388 FLPDKAIDLIDEAASKVRLRSY-----------TAPPNLKELEQKLEETRKEKDAAVQSQ 436
Query: 561 YDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ AS+ D SE + L +D E V DDIA V + W+GIPV ++
Sbjct: 437 EFEKAASLRD-SEQRIREELDQMKNDWKQKQGQENTQVVVDDIAQVVASWTGIPVSKLAE 495
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
+E L+ +EE L KRVIGQ+EAV AIS+AV+R+R GLKDP RP + +F GPTGVGKTE
Sbjct: 496 EETERLLKMEEILHKRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 555
Query: 675 LAKSLAACYFG 685
LA+++A FG
Sbjct: 556 LARAVAETLFG 566
>gi|357520587|ref|XP_003630582.1| ATP-dependent Clp protease ATP-binding subunit clpA-like protein
[Medicago truncatula]
gi|355524604|gb|AET05058.1| ATP-dependent Clp protease ATP-binding subunit clpA-like protein
[Medicago truncatula]
Length = 926
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 286/685 (41%), Positives = 397/685 (57%), Gaps = 64/685 (9%)
Query: 14 RCLFANQPPPPR-HRLPPLQYVNPMSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKR 72
R +F + PR L+ +N + S Q FHS + R
Sbjct: 35 RMMFTTRTASPRLSSYSGLRTLNSLDSMLRPG------QDFHSKVLTQIGTNRAKGGRGS 88
Query: 73 RKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES- 130
R + ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S
Sbjct: 89 RCVT--KAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSM 146
Query: 131 GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRG 190
GI + AR V I +G F A ++PF+ KRV E ++E +R G
Sbjct: 147 GINLKDARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLG 193
Query: 191 YNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGV 250
+N+I EH+ LGL +G A RVL+ LG D ++ V R+ GE A
Sbjct: 194 HNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIR-TQVIRMVGEGA------------ 240
Query: 251 RENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT 310
+S+ + S + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRT
Sbjct: 241 --DSVGATVGSGSS--NNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRT 296
Query: 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370
KNNP L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R
Sbjct: 297 KNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEER 356
Query: 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430
+ L+ EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +T
Sbjct: 357 LKKLMEEIKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGAT 411
Query: 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490
T DE+R EKD AL RRFQPV + EP+ + ++IL GLRE+YE HH ++T EA+ AA
Sbjct: 412 TLDEYRKHIEKDPALERRFQPVKVPEPTVPETIQILKGLRERYEIHHKLRYTDEALVAAA 471
Query: 491 HLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR-TVQA 549
LS +YISDR+LPDKAIDL+DEAGSR + Q L + +E+R V+
Sbjct: 472 ELSHQYISDRFLPDKAIDLIDEAGSRVRL---------QHAQLPEEARGLEKEVRQIVKE 522
Query: 550 MHEVVQGS--------RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
E V+ R K D+ + E E + + D A+V DI +
Sbjct: 523 KDEAVRNQEFEKAGELRDKEMDLKTQISALIEKNKEMNKAESEAGDVGALVTEVDIQHIV 582
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
+ W+GIPV +++ DE L+ +E+ L KR+IGQ EAV AISRA++R+RVGLK+PNRP A+
Sbjct: 583 ASWTGIPVDKVSVDESDRLLKMEDTLHKRIIGQHEAVEAISRAIRRARVGLKNPNRPIAS 642
Query: 662 MLFCGPTGVGKTELAKSLAACYFGS 686
+F GPTGVGK+ELAK+LA+ YFGS
Sbjct: 643 FIFSGPTGVGKSELAKALASYYFGS 667
>gi|413918180|gb|AFW58112.1| hypothetical protein ZEAMMB73_120778 [Zea mays]
Length = 921
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 270/619 (43%), Positives = 377/619 (60%), Gaps = 53/619 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E GI +
Sbjct: 87 VRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVMKSMGINLK 146
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 147 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 193
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D N++ V R+ GE ++
Sbjct: 194 SEHLLLGLLREGEGVAARVLESLGADPNNIRT-QVIRMVGE----------------STE 236
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP
Sbjct: 237 AVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQDQIERVTQILGRRTKNNPC 296
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 297 LIGEPGVGKTAIAEGLAQRISNGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 356
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+++ D+ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 357 EEIKQNEDIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEY 411
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T +A+ AA LS +
Sbjct: 412 RKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHKLRYTDDALIAAAQLSYQ 471
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YISDR+LPDKAIDL+DEAGSR R + Q +K D ++I + +E V+
Sbjct: 472 YISDRFLPDKAIDLIDEAGSRV------RLRHAQLPDEAKELDKELRQI--TKQKNEAVR 523
Query: 556 GSRL----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGI 607
G + D + +++ S + E VGP DI + S W+GI
Sbjct: 524 GQDFEKAGELRDREMELKAQITAIIDKSKEMIKAETESGDVGPLVTEADIQHIVSSWTGI 583
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV+++++DE L+ +EE L R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F GP
Sbjct: 584 PVEKVSSDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGP 643
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGK+ELAK+LAA YFGS
Sbjct: 644 TGVGKSELAKALAAYYFGS 662
>gi|326514880|dbj|BAJ99801.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 920
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 277/660 (41%), Positives = 390/660 (59%), Gaps = 54/660 (8%)
Query: 37 MSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFS 96
M++F + + SN+ S + R RR ++FERFTE+A+K ++ +
Sbjct: 46 MAAFVGLRSVHSFSAMRSSNFRSTVASYR-FSRRGRRASFVTRAMFERFTEKAIKVIMLA 104
Query: 97 QREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHSTNNQDTD 154
Q EA+ LG + V T+ +LLGL+ E L+S GI + AR V I
Sbjct: 105 QEEARRLGHNFVGTEQVLLGLVGEGTGIAAKVLKSMGINLKDARVEVEKII--------- 155
Query: 155 DAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRV 214
+G F A ++PF+ KRV E ++E +R G+N+I EH+ LGL +G A RV
Sbjct: 156 ---GRGNGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARV 211
Query: 215 LKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALE 274
L+ LG D +++ V R+ GE + + + LE
Sbjct: 212 LESLGADPSNIRTQVV-RMIGETTE----------------AVGAGVGGGSSGNKMPTLE 254
Query: 275 QFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIR 334
++ +LT A E +DPV+GRE +I+R++QIL RRTKNNP L+GE GVGKTAIAEGLA R
Sbjct: 255 EYGTNLTKLAEEGKLDPVVGREPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQR 314
Query: 335 IVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTL 394
I +VP + K++++LDMGLL+AG K RGE E R+ L+ EI++S ++ILFIDEVHTL
Sbjct: 315 ISNGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTL 374
Query: 395 IGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLI 454
IG+G +D +N+LKP+L RGELQCI +TT DE+R EKD AL RRFQPV +
Sbjct: 375 IGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHVEKDPALERRFQPVKV 429
Query: 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAG 514
EP+ ++ + IL GLRE+YE HH ++T +++ AA LS +YISDR+LPDKAIDL+DEAG
Sbjct: 430 PEPTVDETIEILRGLRERYEIHHKLRYTDDSLIAAAKLSYQYISDRFLPDKAIDLIDEAG 489
Query: 515 SRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL----KYDDVVASMGD 570
SR R + Q ++ D ++I + +E V+G + D +
Sbjct: 490 SRV------RLRHAQVPEEARELDKELKQI--TKDKNEAVRGQDFEKAGELRDREMELKA 541
Query: 571 TSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIPVQQITADERMLLVGLEEQ 626
+++ S + E GP DI + S W+GIPV++++ DE L+ +EE
Sbjct: 542 QITTLIDKSKEMTKAETESGETGPMVNESDIQHIVSSWTGIPVEKVSTDESDKLLKMEET 601
Query: 627 LKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
L KRVIGQDEAV AISR+V+R+RVGLK PNRP A+ +F GPTGVGK+ELAK+LA+ YFGS
Sbjct: 602 LHKRVIGQDEAVKAISRSVRRARVGLKSPNRPIASFIFAGPTGVGKSELAKTLASYYFGS 661
>gi|347602486|sp|Q7F9I1.2|CLPC1_ORYSJ RecName: Full=Chaperone protein ClpC1, chloroplastic; AltName:
Full=ATP-dependent Clp protease ATP-binding subunit ClpC
homolog 1; AltName: Full=Casein lytic proteinase C1;
Flags: Precursor
Length = 918
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 270/620 (43%), Positives = 380/620 (61%), Gaps = 55/620 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 84 VRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 143
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 144 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 190
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D N++ V R+ GE ++
Sbjct: 191 SEHLLLGLLREGEGVAARVLESLGADPNNIRT-QVIRMVGE----------------STE 233
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP
Sbjct: 234 AVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQDQIERVTQILGRRTKNNPC 293
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 294 LIGEPGVGKTAIAEGLAQRISNGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 353
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+++ D+ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 354 EEIKQNDDIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEY 408
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T +++ AA LS +
Sbjct: 409 RKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHKLRYTDDSLIAAAQLSYQ 468
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVV 554
YISDR+LPDKAIDL+DEAGSR + + L + +E+R V + +E V
Sbjct: 469 YISDRFLPDKAIDLIDEAGSRVRL---------RHAQLPDEAKELDKELRQVTKDKNEAV 519
Query: 555 QGSRL----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSG 606
+G + D + +++ S + E VGP DI + S W+G
Sbjct: 520 RGQDFEKAGELRDREMELKAQITAIIDKSKEMVKAETESGEVGPLVTEADIQHIVSSWTG 579
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV+++++DE L+ +EE L R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F G
Sbjct: 580 IPVEKVSSDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 639
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGK+ELAK+LAA YFGS
Sbjct: 640 PTGVGKSELAKALAAYYFGS 659
>gi|168053476|ref|XP_001779162.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669421|gb|EDQ56008.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 922
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 270/618 (43%), Positives = 380/618 (61%), Gaps = 55/618 (8%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKA 137
++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G+ + +A
Sbjct: 100 AMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKEA 159
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E ++E +R G+N+I E
Sbjct: 160 RVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTE 206
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LG D +++ V R+ GE N+ +
Sbjct: 207 HLLLGLLREGEGVAARVLENLGADPSNIR-TQVIRMVGE----------------NNEAV 249
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
G + LE++ +LT A E +DPV+GR +I+R+ QIL RRTKNNP L+
Sbjct: 250 GVGGGSGSGSNKMPTLEEYGTNLTKLAEEGKLDPVVGRVAQIERVTQILGRRTKNNPCLI 309
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+AEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ E
Sbjct: 310 GEPGVGKTAVAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 369
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++ D+IL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 370 IKQADDIILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRK 424
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPVL+ EP+ E+ + IL GLRE+YE HH ++T EA+ AA LS +YI
Sbjct: 425 HIEKDPALERRFQPVLVPEPTVEETIEILKGLRERYEIHHKLRYTDEALIAAAQLSYQYI 484
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQG 556
SDR+LPDKAIDL+DEAGS+ R K Q L + + +++R V + +E V+G
Sbjct: 485 SDRFLPDKAIDLIDEAGSKV------RLKHAQ---LPEEARELDKQLRAVTKEKNEAVRG 535
Query: 557 SRL----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIP 608
+ D + + +E + E VGP DI + + W+GIP
Sbjct: 536 QDFEKAGELRDKEMELKAQISVFIEKGKEQMKAESETGDVGPTVEESDIQQIVAAWTGIP 595
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
++++++DE L+ +E+ L RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPT
Sbjct: 596 MEKVSSDESDRLLKMEDTLHNRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPT 655
Query: 669 GVGKTELAKSLAACYFGS 686
GVGK+ELAK+LA+ YFGS
Sbjct: 656 GVGKSELAKALASYYFGS 673
>gi|399055773|ref|ZP_10743423.1| ATPase with chaperone activity, ATP-binding subunit [Brevibacillus
sp. CF112]
gi|433543324|ref|ZP_20499734.1| negative regulator of genetic competence [Brevibacillus agri
BAB-2500]
gi|398046636|gb|EJL39230.1| ATPase with chaperone activity, ATP-binding subunit [Brevibacillus
sp. CF112]
gi|432185453|gb|ELK42944.1| negative regulator of genetic competence [Brevibacillus agri
BAB-2500]
Length = 816
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 264/614 (42%), Positives = 364/614 (59%), Gaps = 53/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + + EA LG + T+H+LLGLI E G+ +DK +
Sbjct: 2 MFGRFTERAQKVLALALEEAVRLGHKDIGTEHVLLGLIREGEGIAAKALQSLGLGLDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMP-FSISTKRVFEAAVEYSRSRGYNFIAPE 197
V S+ +G S + P ++ K+V E +++ +R G+ ++ E
Sbjct: 62 SEVESLI------------GRGTEQSGSNYTPNYTPRAKKVIELSMDEARKLGHTYVGTE 109
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A R++ LGV +N + L +PS G
Sbjct: 110 HILLGLIREGEGIAARIMNNLGVSLNKARQQVLQLLGSSEMMASHQPS-----------G 158
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A +P L+ DLTA A + +DPVIGR+ EI+R+IQ+L RRTKNNP+L+
Sbjct: 159 GNPAANTP------TLDGLARDLTAIARDGGLDPVIGRQKEIERVIQVLSRRTKNNPVLI 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA +IV E+P L KR+M+LDMG ++AG K RGE E R+ ++ E
Sbjct: 213 GEPGVGKTAIAEGLAQKIVNNEIPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKIMDE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQC+ +TT DE+R
Sbjct: 273 IRQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCVGATTLDEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EP+ EDA+RIL GLR++YEAHH K T EAI AV LS RYI
Sbjct: 328 YIEKDAALERRFQPIQVDEPTAEDAIRILHGLRDRYEAHHRVKITDEAIEQAVKLSDRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDLVDEA S+ ++ F + PP+ E R + E
Sbjct: 388 TDRFLPDKAIDLVDEAASKVRLQSF-----------TVPPNLKELEGRLEEVRKEKDAAV 436
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDE-----PAVVGPDDIAAVASLWSGIPVQQI 612
+ + + A++ D + + E + D E V P+DIA V + W+GIPV ++
Sbjct: 437 QSQEFEEAAALRDQEQKLREELDKTKKDWKERQGQLNMEVTPEDIATVVASWTGIPVLKL 496
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +EE L RVIGQDEAV +ISRA++R+R GLKDP RP + +F GPTGVGK
Sbjct: 497 KEEETERLLKMEEILHDRVIGQDEAVKSISRAIRRARAGLKDPKRPIGSFIFLGPTGVGK 556
Query: 673 TELAKSLAACYFGS 686
TELA+++A FG
Sbjct: 557 TELARAVAETLFGD 570
>gi|428305782|ref|YP_007142607.1| ATPase [Crinalium epipsammum PCC 9333]
gi|428247317|gb|AFZ13097.1| ATPase AAA-2 domain protein [Crinalium epipsammum PCC 9333]
Length = 815
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 270/612 (44%), Positives = 380/612 (62%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FER T++AVK +I +Q E + LG +V T+ +LLGLI E +E G + KAR
Sbjct: 1 MFERLTDKAVKVIIVAQEETRRLGHTLVGTEQILLGLIGEGTSVAAKILVERGANLQKAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I +G F ++P + KR+F+ A+ S+ G+N+I+PEH
Sbjct: 61 KEVEKII------------GRGSRFVPE-QIPVTPKVKRIFDQALIESQQLGHNYISPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LGVD+ L + +L E P+ R+ S
Sbjct: 108 LLLGLLNEGEGVATRVLQNLGVDLKELQLAVLKQLTVE------APAEVGTTRQRS---- 157
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ + L++F DLT A++ +DPV+GRE EI+R IQIL RRTKNNP+L+G
Sbjct: 158 --------QNKTPILDEFGTDLTELAAKGKLDPVVGREREIERAIQILGRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ VP L K+++SLDMG L+AG K RGE E R+ ++ E+
Sbjct: 210 EPGVGKTAIAEGLAQRIINKNVPGTLEDKQVISLDMGSLVAGTKFRGEFEERLKGIVEEV 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ SG++IL IDE+H +IG+G+V +G GLD +N+LKP+L RGELQCI TT DE+R
Sbjct: 270 RSSGNIILVIDELHNIIGTGSV----QG-GLDAANMLKPALARGELQCIGMTTLDEYRKH 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS + + IL GLRE YE H K + +AI+AA LS +YIS
Sbjct: 325 IEKDAALERRFQPIKVGEPSVVETIEILFGLREAYEQFHKVKISDDAIDAAAKLSDQYIS 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGS 557
DR+LPDKAIDL+DEAGSR ++ +S + +E+R V +A E VQ
Sbjct: 385 DRFLPDKAIDLIDEAGSRLRVQ----------NTMSPAHRELKRELRQVSKAKQEAVQ-- 432
Query: 558 RLKYDDVVASMGDTSEIVVESSLP---SASDDDEPAVVGPDDIAAVASLWSGIPVQQITA 614
++ D + D E+ +E L ++ D + VV + IA + ++W+G+PV ++T
Sbjct: 433 -VQDFDQAGKLRD-KELELEGQLKKMATSQDSADIPVVDAEKIAEIVAVWTGVPVSKLTE 490
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ LE+ L +R+IGQD+AV A+S+A++R+RVGLK PNRP A+ +F GPTGVGKTE
Sbjct: 491 SESAKLLDLEDTLHQRLIGQDQAVTAVSKAIRRARVGLKSPNRPIASFIFSGPTGVGKTE 550
Query: 675 LAKSLAACYFGS 686
LAK+LAA +FGS
Sbjct: 551 LAKALAAHFFGS 562
>gi|170760517|ref|YP_001788851.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum A3 str. Loch Maree]
gi|169407506|gb|ACA55917.1| putative negative regulator of genetic competence MecB/ClpC
[Clostridium botulinum A3 str. Loch Maree]
Length = 811
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 258/612 (42%), Positives = 363/612 (59%), Gaps = 52/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+F RFTERA K ++ +Q EA+ V T+H+LLG++ ED L + IT DK R+
Sbjct: 2 MFGRFTERAQKVLMNAQEEAEKFKHGYVGTEHILLGILIEDGVAKQLLNNFSITEDKVRQ 61
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ + +G+ S ++P + TKR+ E ++ +R+ +N+I PEHI
Sbjct: 62 LI------------ERYEGKGEMDLSKNEIPLTPRTKRLLEMSLLEARNLNHNYITPEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A +L LG+D L + L G+ + K
Sbjct: 110 LLGLIREAEGVAFTILSNLGLDAERLKKELIKNLSGQE------------------TPKD 151
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
K ++ L+QF DLT A E +DPVIGR+ E QR+++ILCRRTKNNP L+GE
Sbjct: 152 EDSKKSSKSSTPTLDQFGRDLTEMAEEGKVDPVIGRDKETQRVLEILCRRTKNNPCLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA I+ +P L SKR+++LD+ ++AGAK RGE E R+ ++ E++
Sbjct: 212 PGVGKTAIAEGLAQNIINGNIPEILKSKRVVTLDLTSMIAGAKYRGEFEDRLKKIMEEVR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
S D ILFIDE+HT++G+G +D +N+LKP+L RGE+QCI +TT DE+R
Sbjct: 272 SSKDTILFIDEIHTIVGAGAA-----EGAIDAANILKPALARGEIQCIGATTLDEYRKYI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EP++E+ + IL GLR+KYEAHH KFT +AI AAV+LS RYI D
Sbjct: 327 EKDSALERRFQPINVGEPTKEETIEILKGLRDKYEAHHRVKFTDDAIYAAVNLSDRYIRD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEAGS+ I+ L PPD E + + + E R+
Sbjct: 387 RFLPDKAIDLMDEAGSKVRIQ-----------NLIAPPDLKNIEEQLDKVVKEKEDAIRV 435
Query: 560 KYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ + A++ D + + E D + +V IAAV S W+ IPV ++T
Sbjct: 436 QDFEKAANLRDKEKELKEKLEGLKKDWNAEKEGSNLIVSEQQIAAVVSNWTNIPVNKLTE 495
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ LE+ L RVIGQ+EA+ ++SR+V+R+RVGLKDP RP + +F GPTGVGKTE
Sbjct: 496 KESERLLKLEDILHNRVIGQEEAIKSVSRSVRRARVGLKDPKRPIGSFIFLGPTGVGKTE 555
Query: 675 LAKSLAACYFGS 686
L K+LA FG+
Sbjct: 556 LTKALAEAMFGN 567
>gi|218194777|gb|EEC77204.1| hypothetical protein OsI_15716 [Oryza sativa Indica Group]
Length = 785
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 270/620 (43%), Positives = 380/620 (61%), Gaps = 55/620 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 84 VRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 143
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 144 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 190
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D N++ V R+ GE ++
Sbjct: 191 SEHLLLGLLREGEGVAARVLESLGADPNNIR-TQVIRMVGE----------------STE 233
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP
Sbjct: 234 AVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQDQIERVTQILGRRTKNNPC 293
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 294 LIGEPGVGKTAIAEGLAQRISNGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 353
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+++ D+ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 354 EEIKQNDDIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEY 408
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T +++ AA LS +
Sbjct: 409 RKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHKLRYTDDSLIAAAQLSYQ 468
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVV 554
YISDR+LPDKAIDL+DEAGSR + + L + +E+R V + +E V
Sbjct: 469 YISDRFLPDKAIDLIDEAGSRVRL---------RHAQLPDEAKELDKELRQVTKDKNEAV 519
Query: 555 QGSRL----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSG 606
+G + D + +++ S + E VGP DI + S W+G
Sbjct: 520 RGQDFEKAGELRDREMELKAQITAIIDKSKEMVKAETESGEVGPLVTEADIQHIVSSWTG 579
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV+++++DE L+ +EE L R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F G
Sbjct: 580 IPVEKVSSDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 639
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGK+ELAK+LAA YFGS
Sbjct: 640 PTGVGKSELAKALAAYYFGS 659
>gi|434398661|ref|YP_007132665.1| ATPase AAA-2 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428269758|gb|AFZ35699.1| ATPase AAA-2 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 788
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 260/608 (42%), Positives = 357/608 (58%), Gaps = 77/608 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FE F ++A+K++I +Q EA+S G ++V ++HLLLG+I E + GI +++ R
Sbjct: 1 MFEYFNDKAIKSIILAQEEARSTGHNLVGSEHLLLGVIGEGTSIAATVLADKGINVNQTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + + + +G FS A +PF+ K +F+ A+ +R I P H
Sbjct: 61 KLI------------EQYSGRGSGFSPA-NLPFTPKVKSIFDQALIEARQLDRKNITPAH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L + D A +VL + G+ +N L + +L EP A REN +
Sbjct: 108 ILLAIAKDSDSVAAKVLIQQGIKLNQLRTDLLKKLAEP------EPIGAANKRENPFNFG 161
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
P L++F V+LT A E +DPVIGRE EI R +QIL RRTKNNP+L+G
Sbjct: 162 NPNAAKP------TLKEFGVNLTQLAKEGKLDPVIGREAEIARTVQILGRRTKNNPVLVG 215
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV +VP + K+++SLDMGLL+AG K RGE E R+ ++ E+
Sbjct: 216 EPGVGKTAIAEGLAQRIVDEDVPELIKDKQVISLDMGLLLAGTKFRGEFEERLKAIVDEV 275
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++IL IDE+HTL+G+G + G +D +NLLKP+L RGE QC+ STT DE+R
Sbjct: 276 RQAGNIILVIDEIHTLVGAGAM-----GGAMDAANLLKPALARGEFQCLGSTTLDEYRQH 330
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQ V+I EPS DA+ I+ GLR+ YE H K+T +A+ AAV LS RYIS
Sbjct: 331 IERDAALERRFQKVMIGEPSVADAIAIIRGLRKTYEEFHQVKYTEKALEAAVTLSERYIS 390
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR H+ + QQT D QE
Sbjct: 391 DRFLPDKAIDLIDEAGSRIHL-----RHSQQT-------DQKHQE--------------- 423
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
E+ +P + VV +IA + + W+GIPV +I E
Sbjct: 424 ------------------ETQVPIINPKSLTPVVDEAEIAHIVASWTGIPVNKINQTESE 465
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
+L+ LE L +RVIGQDEAV A+SRA++R+R GL PNRP A+ +F GPTGVGKTELAK+
Sbjct: 466 VLLNLEANLHERVIGQDEAVCAVSRALRRARAGLSSPNRPIASFIFSGPTGVGKTELAKA 525
Query: 679 LAACYFGS 686
LA FGS
Sbjct: 526 LATYMFGS 533
>gi|38347158|emb|CAE05148.2| OSJNBa0039C07.4 [Oryza sativa Japonica Group]
Length = 888
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 270/620 (43%), Positives = 380/620 (61%), Gaps = 55/620 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 54 VRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 113
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 114 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 160
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D N++ V R+ GE ++
Sbjct: 161 SEHLLLGLLREGEGVAARVLESLGADPNNIRT-QVIRMVGE----------------STE 203
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP
Sbjct: 204 AVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQDQIERVTQILGRRTKNNPC 263
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 264 LIGEPGVGKTAIAEGLAQRISNGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 323
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+++ D+ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 324 EEIKQNDDIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEY 378
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T +++ AA LS +
Sbjct: 379 RKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHKLRYTDDSLIAAAQLSYQ 438
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVV 554
YISDR+LPDKAIDL+DEAGSR + + L + +E+R V + +E V
Sbjct: 439 YISDRFLPDKAIDLIDEAGSRVRL---------RHAQLPDEAKELDKELRQVTKDKNEAV 489
Query: 555 QGSRL----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSG 606
+G + D + +++ S + E VGP DI + S W+G
Sbjct: 490 RGQDFEKAGELRDREMELKAQITAIIDKSKEMVKAETESGEVGPLVTEADIQHIVSSWTG 549
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV+++++DE L+ +EE L R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F G
Sbjct: 550 IPVEKVSSDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 609
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGK+ELAK+LAA YFGS
Sbjct: 610 PTGVGKSELAKALAAYYFGS 629
>gi|319654839|ref|ZP_08008914.1| class III stress response-like ATPase [Bacillus sp. 2_A_57_CT2]
gi|317393402|gb|EFV74165.1| class III stress response-like ATPase [Bacillus sp. 2_A_57_CT2]
Length = 816
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 267/612 (43%), Positives = 366/612 (59%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLVREGEGIAAKALYALGLGSDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ G+ ++ + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVENLI--------------GRGQDASQTIHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G E +G G
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG-----SNESGSHQG-------GS 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A +P L+ DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 155 AANANTP------TLDGLARDLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIINNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++V+IL GLR++YEAHH T AI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPITVDEPTAEESVQILEGLRDRYEAHHRVTITDAAIQAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ E++ E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSY-----------TTPPNLKELEVKLEDVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVES-----SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + E E + V +DIA V + W+GIPV ++
Sbjct: 433 SQEFEKAASLRDTEQRLREQLEETKKTWKEKQGKENSEVTVEDIANVVASWTGIPVSKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L RVIGQ+EAV AIS+AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETEKLLNLEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFVFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|257057942|ref|YP_003135830.1| AAA ATPase [Cyanothece sp. PCC 8802]
gi|256588108|gb|ACU98994.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 8802]
Length = 789
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 263/629 (41%), Positives = 372/629 (59%), Gaps = 80/629 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL--ESGITIDKAR 138
+FE FT++A+KA++ SQ EA+ G+++V T+HLLLGLI E + E G+T+ + R
Sbjct: 1 MFEYFTDKAIKAIMLSQEEARRTGQNLVGTEHLLLGLIGEGTSITSMVLEEFGLTLAQTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ D +G FS A +PF+ KR+ E A SR G ++ PEH
Sbjct: 61 YTI------------DQIRGKGGGFSPA-NIPFTPIVKRILEQAFNNSRQEGDRYVNPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L L + + A +VL GV+ + L + ++ + EP + G
Sbjct: 108 ILLALISDSNTVAAKVLNLQGVEPSQLRISLLKKIAEQ------EPVTV------AARGN 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ SP RT+ + L+ F ++LT RA E +DP++GR E++R+IQIL RRTKNNP+L+G
Sbjct: 156 ESIFDSPPRTQ-TRLQDFGINLTQRAKEGKLDPMVGRNQELERVIQILGRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV ++P L K++++LDM LL+AG + RGE E R+ ++ E+
Sbjct: 215 EPGVGKTAIAEGLAQRIVNKDLPETLQDKQVIALDMTLLVAGTRFRGEFEERLKAIVEEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
++G++IL IDE+HTL+G+G +G G LD +NLLKP+L RGELQC+ +TT DE+R
Sbjct: 275 CQAGNIILVIDEIHTLVGAGALG----GV-LDAANLLKPALARGELQCLGTTTLDEYRQY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EPS + + IL GLR++YEA+H KF A+ AA L+ RYIS
Sbjct: 330 IERDAALERRFQPVMVGEPSVTETIEILYGLRKEYEAYHKVKFEDCALEAAATLADRYIS 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR H+ R
Sbjct: 390 DRFLPDKAIDLIDEAGSRIHL--------------------------------------R 411
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
V + GD + SL D P VV +DIA + + W+GIP+ +++ E
Sbjct: 412 HSLQTKVTTSGDNN----SQSLVINPDSLVP-VVDAEDIAQIVTAWTGIPINKLSETESE 466
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ LE QL + +IGQ+EAV A+SRAV+R+RVGLK+P+RP A+ +F GPTGVGKTEL K+
Sbjct: 467 SLLHLEAQLHESIIGQEEAVKAVSRAVRRARVGLKNPHRPVASFIFAGPTGVGKTELTKA 526
Query: 679 LAACYFGS----VRIHYLFFPSPFNSVKV 703
LA FGS +R+ F P K+
Sbjct: 527 LARYLFGSEEAMIRLDMSEFMEPHTVSKL 555
>gi|374603227|ref|ZP_09676209.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
dendritiformis C454]
gi|374391096|gb|EHQ62436.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
dendritiformis C454]
Length = 812
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 264/621 (42%), Positives = 372/621 (59%), Gaps = 74/621 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALVALGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVETLIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G ++ V +S G+
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLGS----------SEAV--SSHHGQ 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ + +P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 155 SQNVSTP------TLDGLARDLTAAAKEGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA +I+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAVAEGLAQKIINNEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +P+ E+ + IL GLR++YEAHH K + EAI AV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPTIEETILILKGLRDRYEAHHRVKISDEAIEQAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHI----------ELFKR----KKEQQTCILSKPPDDYWQEI 544
DR+LPDKAIDL+DEAGS+ + EL R +KE+ + S QE
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLNSYTVPPNLKELEARLDDIRKEKDASVQS-------QEF 436
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW 604
A+ + Q R + D V + D E V P+DIA + S W
Sbjct: 437 EKAAALRDTEQKMREELDSVRNQWKEK----------QGRMDSE---VTPEDIAQIVSSW 483
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+G+PV ++ +E L+ +EE L +RVIGQDEAV A+SRA++R+R GLKDP RP + +F
Sbjct: 484 TGVPVVKLKEEETQRLLNMEEVLHERVIGQDEAVKAVSRAIRRARAGLKDPKRPMGSFIF 543
Query: 665 CGPTGVGKTELAKSLAACYFG 685
GPTGVGKTELA++LA FG
Sbjct: 544 LGPTGVGKTELARALAESLFG 564
>gi|293332601|ref|NP_001169540.1| uncharacterized protein LOC100383416 [Zea mays]
gi|224029989|gb|ACN34070.1| unknown [Zea mays]
gi|413916758|gb|AFW56690.1| cytokinin inducible protease1 [Zea mays]
Length = 921
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 268/613 (43%), Positives = 381/613 (62%), Gaps = 45/613 (7%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKA 137
++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + A
Sbjct: 89 AMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDA 148
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E ++E +R G+N+I E
Sbjct: 149 RVEVEKII------------GRGNGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSE 195
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LG D +++ V R+ GE + +
Sbjct: 196 HLLLGLLREGEGVAARVLESLGADPSNIRT-QVIRMIGETTE----------------AV 238
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+
Sbjct: 239 GAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 298
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ E
Sbjct: 299 GEPGVGKTAIAEGLAQRISTGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 358
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 359 IKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRK 413
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EP+ ++ + IL GLRE+YE HH ++T EA+ AA LS +YI
Sbjct: 414 HIEKDPALERRFQPVKVPEPTVDETIEILRGLRERYEIHHKLRYTDEALIAAAKLSYQYI 473
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
SDR+LPDKAIDL+DEAGSR ++ + +E + L K ++ + +
Sbjct: 474 SDRFLPDKAIDLIDEAGSRVRLQHAQVPEEARE--LDKELKQVTKQKNEAVRSQDFEKAG 531
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIPVQQIT 613
L+ ++ T+ +++ S + ++E GP +DI + S W+GIPV++++
Sbjct: 532 ELRDREMELKAQITA--LIDKSKELSKAEEESGETGPMVNEEDIQHIVSSWTGIPVEKVS 589
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+DE L+ +EE L KRVIGQDEAV AISR+++R+RVGLK+PNRP A+ +F GPTGVGK+
Sbjct: 590 SDESDKLLKMEETLHKRVIGQDEAVVAISRSIRRARVGLKNPNRPIASFIFAGPTGVGKS 649
Query: 674 ELAKSLAACYFGS 686
ELAK+LAA YFGS
Sbjct: 650 ELAKALAAYYFGS 662
>gi|215400791|ref|YP_002327552.1| caseinolytic-like Clp protease [Vaucheria litorea]
gi|194441241|gb|ACF70969.1| caseinolytic-like Clp protease [Vaucheria litorea]
Length = 862
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 262/619 (42%), Positives = 375/619 (60%), Gaps = 36/619 (5%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F+RFTE+A++A+I Q E++ LG + V T+ +LLGLI E+ +G+ +
Sbjct: 1 MFDRFTEKALQAIILGQEESRRLGHNFVGTEQILLGLIGEN--------TGVAYRALKSF 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + +G F A ++PF+ K++ E ++E R +++I EH+
Sbjct: 53 RVTLKDARLEVERMLGRGRGTTFP-AGEIPFTPRAKKILEMSMEQGRKYNHSYINTEHLL 111
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL--AKEGREPSLAKGVRENSISGK 258
L + +G+A +L +LGV++ L V L GE+ A S K +N G+
Sbjct: 112 LAIIEDTNGAANNILIQLGVNLLRLKT-KVLELMGEIVEATATLLTSPPKSNDKNKKVGE 170
Query: 259 TAALKSPGRT------RASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKN 312
L +T + LE+F +LT A + +DPVIGRE EI+R+IQIL RR KN
Sbjct: 171 IFVLHGQNQTDEDGVIKRPTLEEFTTNLTDAALKGNLDPVIGREKEIERVIQILSRRRKN 230
Query: 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVT 372
NPIL+GE GVGKTA+AEGLA RIVQ E P L K+I+ LD+GLL+AG K RGE E R+
Sbjct: 231 NPILIGEPGVGKTAVAEGLAQRIVQKEAPATLHDKKIIVLDVGLLLAGTKYRGEFEERLK 290
Query: 373 TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432
++ EIQ S D+I+ IDEVHTLIG+G ++G LD +N+LKP L RGELQCI +TT
Sbjct: 291 RIVEEIQSSDDIIIVIDEVHTLIGAG----ASEG-ALDAANILKPVLARGELQCIGATTL 345
Query: 433 DEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492
DE+R EKD AL RRFQPV + EPS + + IL GLR++YE HH + A+ AA +L
Sbjct: 346 DEYRQHIEKDAALERRFQPVQVDEPSITETIEILKGLRQRYEHHHQLTISTAALVAAANL 405
Query: 493 SARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHE 552
A+YI+DR+LPDKAIDL+DEAGSR + + + ++ D +EI +QA +
Sbjct: 406 GAQYIADRFLPDKAIDLIDEAGSRVRLNNYYVPES------ARELDKELREI--LQAKDD 457
Query: 553 VVQGSRLKY-----DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
V+ + D + + + I+ L + E V +DIA V W+GI
Sbjct: 458 AVRAQNFEKAGELRDREMETRSMITAIIKSQKLIKKPVNVEKPTVEEEDIAHVVGAWTGI 517
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV +IT +E L+ +E L +RV+GQ +AV A+SRA++R+RVGL++PNRP A+ LF GP
Sbjct: 518 PVNKITKNETAKLLDMENILHQRVVGQSQAVTAVSRAIRRARVGLRNPNRPIASFLFAGP 577
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGKTEL K+LA+ +FGS
Sbjct: 578 TGVGKTELTKALASYFFGS 596
>gi|452990568|emb|CCQ98240.1| class III stress response-related ATPase, AAA+ superfamily
[Clostridium ultunense Esp]
Length = 812
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 260/616 (42%), Positives = 369/616 (59%), Gaps = 60/616 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKA 137
++F RFTERA KA++ +Q EAK L + V T+H+LLGL+AE + G+ ++
Sbjct: 2 AMFGRFTERAQKAILLAQEEAKRLRHNYVGTEHILLGLLAEGEGVAATSLNKRGVDLEIV 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V+ A G+ +A M F+ TKR+FE + +R+ G+N++ E
Sbjct: 62 RNEVIK--------------AIGEGSYNADIMGFTPRTKRIFELSFLEARNLGHNYVGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A +LK+LGVD L +S L AK
Sbjct: 108 HILLGLLEESEGVAVAILKKLGVDTLKLRDDILSMLSDGTAK------------------ 149
Query: 258 KTAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
+A S GR ++ L+++ DLT + + IDPVIGR EI+R+IQIL RRTKNNP+L
Sbjct: 150 --SASSSEGRQDSTPNLDKYGRDLTKLSIDGKIDPVIGRAKEIERVIQILSRRTKNNPVL 207
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA +IV+ +VP + KR+++LD+ ++AGAK RGE E R+ +++
Sbjct: 208 IGEPGVGKTAIAEGLAQKIVEGQVPEIIKDKRVVTLDLPGMLAGAKYRGEFEERLKSVMK 267
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
E++++G++ILFIDE+HT+IG+G +D SN+LKP L RGELQ I +TT DE+R
Sbjct: 268 ELKEAGNIILFIDELHTIIGAGAA-----EGAIDASNILKPVLARGELQVIGATTIDEYR 322
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+++ EP+ ED ++IL GLR++YEAHH K + EA+ AA LS+RY
Sbjct: 323 KHIEKDSALERRFQPIMVEEPTVEDTIKILEGLRDRYEAHHRVKISDEALKAAAELSSRY 382
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD---DYWQEIRTV-QAMHE 552
I+DR+LPDKAIDL+DEA S I + PD D +++ + Q E
Sbjct: 383 ITDRFLPDKAIDLIDEAASMIRINSY------------VAPDGLKDLEEKLEELSQEKEE 430
Query: 553 VVQGSRLKYDDVVASMGDT--SEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ + + M E+ E + VVG D+IA V S W+G+PV
Sbjct: 431 AINTQNFEKAAKIRDMEKNIREELQKEKNRWEKEKQTSDMVVGYDEIAHVVSNWTGVPVS 490
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L+ LE+ L ++VIGQ++AV A+S AV+R+RVGLKDP +P +F GPTGV
Sbjct: 491 RMTTEESQRLLNLEDTLHEKVIGQNQAVEAVSNAVRRARVGLKDPKKPVGTFIFVGPTGV 550
Query: 671 GKTELAKSLAACYFGS 686
GKT LAK+LA FG
Sbjct: 551 GKTYLAKALAETLFGD 566
>gi|399889691|ref|ZP_10775568.1| negative regulator of genetic competence mecB/clpC [Clostridium
arbusti SL206]
Length = 813
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 268/613 (43%), Positives = 371/613 (60%), Gaps = 57/613 (9%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-----GITIDKAR 138
RF ER K + +++ EA+ + T+H+LLG++ E+ NG + G+TID R
Sbjct: 5 RFNERTEKVLFYAKEEAQMFQHGYIGTEHVLLGILKEE---NGISKKILNNLGVTIDGVR 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + +G ++P + TKR+ E + + + +N+I+PEH
Sbjct: 62 NLIA------------EYEGKGDIDLYRNEVPLTPRTKRLLEISALEATNLNHNYISPEH 109
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L L +G A +L L D + L + G A EG +NS S
Sbjct: 110 ILLALIREGEGVAFTILGNLNADFDRLRK---EIMDGLAAGEGNNA-------KNSNSVN 159
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A +P AL+QF DLT ASE +DPVIGR+ E QR+++ILCRRTKNNP L+G
Sbjct: 160 QANSATP------ALDQFGRDLTVMASEGKLDPVIGRDGETQRVLEILCRRTKNNPCLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTAIAEGLA RIV +P L KR+++LD+ ++AG+K RGE E R+ +++EI
Sbjct: 214 DPGVGKTAIAEGLAQRIVSGNIPEILKDKRVVTLDISSMVAGSKYRGEFEERLKRVMTEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ SG+VI+FIDE+HT+IG+G G +G +D SN+LKPSL RGE+QCI +TT DE+R
Sbjct: 274 RNSGNVIIFIDEIHTIIGAG----GAEG-AIDASNILKPSLARGEIQCIGATTIDEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS+E+AV IL GLR+KYEAHH K T +A+ AAV+L+ RYI+
Sbjct: 329 IEKDSALERRFQPVTVGEPSKEEAVLILRGLRDKYEAHHRVKITDDALEAAVNLADRYIT 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAG++ IE L+ PPD QE + E R
Sbjct: 389 DRYLPDKAIDLIDEAGAKVRIE-----------NLTAPPDLKNQEEELEKTEKEKADAIR 437
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASD--DDEPAVVGPDDIAAVASLWSGIPVQQIT 613
L+ + A + D + + +E + + D + +V IAAV + W+ IPV+++T
Sbjct: 438 LQDFEKAARLRDKEKELKGKIEDFKKNWKNRKDVQNHIVSETQIAAVVAKWANIPVEKLT 497
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L KRVIGQ+EAV ++SRAV+R+RVGLKDP RP + +F GPTGVGKT
Sbjct: 498 EKESEKLLKLEEILHKRVIGQNEAVKSVSRAVRRARVGLKDPKRPIGSFIFLGPTGVGKT 557
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 558 ELSKALAEAMFGD 570
>gi|125590233|gb|EAZ30583.1| hypothetical protein OsJ_14634 [Oryza sativa Japonica Group]
Length = 1033
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 273/623 (43%), Positives = 381/623 (61%), Gaps = 61/623 (9%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 199 VRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 258
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 259 DARVEVEKI------------IGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 305
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D N++ V R+ GE ++
Sbjct: 306 SEHLLLGLLREGEGVAARVLESLGADPNNIRT-QVIRMVGE----------------STE 348
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP
Sbjct: 349 AVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQDQIERVTQILGRRTKNNPC 408
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 409 LIGEPGVGKTAIAEGLAQRISNGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 468
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+++ D+ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 469 EEIKQNDDIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEY 523
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T +++ AA LS +
Sbjct: 524 RKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHKLRYTDDSLIAAAQLSYQ 583
Query: 496 YISDRYLPDKAIDLVDEAGSRA---HIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMH 551
YISDR+LPDKAIDL+DEAGSR H +L KE +E+R V + +
Sbjct: 584 YISDRFLPDKAIDLIDEAGSRVRLRHAQLPDEAKELD------------KELRQVTKDKN 631
Query: 552 EVVQGSRL----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASL 603
E V+G + D + +++ S + E VGP DI + S
Sbjct: 632 EAVRGQDFEKAGELRDREMELKAQITAIIDKSKEMVKAETESGEVGPLVTEADIQHIVSS 691
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIPV+++++DE L+ +EE L R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +
Sbjct: 692 WTGIPVEKVSSDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFI 751
Query: 664 FCGPTGVGKTELAKSLAACYFGS 686
F GPTGVGK+ELAK+LAA YFGS
Sbjct: 752 FSGPTGVGKSELAKALAAYYFGS 774
>gi|367467387|ref|ZP_09467329.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Patulibacter
sp. I11]
gi|365817543|gb|EHN12499.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Patulibacter
sp. I11]
Length = 866
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 266/622 (42%), Positives = 374/622 (60%), Gaps = 62/622 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTERA + V+ +Q EA++L + + T+H+LLGL+ E+ LES IT+++ R
Sbjct: 1 MFERFTERARQVVVLAQEEARTLKHNYIGTEHILLGLLREEEGLAARVLESLDITVERVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
VV I S G+ +S ++PF+ K+V E A+ + S G+N+I EH
Sbjct: 61 AQVVRIVGS------------GEEVTSG-QIPFTPRAKKVLELALREALSLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL ++G A R+L D + + L G P + +S+ G
Sbjct: 108 ILLGLVRENEGVAARILLDFDADSEKIRNEVIRMLSG--------PGGRRQTAGSSVGGA 159
Query: 259 TAALK-SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A+ + +P + + L+QF DLT A+E +DPV+GRETEI+RI+QIL RRTKNNP+L+
Sbjct: 160 PASGEGTPQKRSSKVLDQFGRDLTKLAAEGKLDPVVGRETEIERIMQILSRRTKNNPVLI 219
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA RI +VP L K+I +LD+ L+AG+K RGE E R+ ++ E
Sbjct: 220 GEPGVGKTAVVEGLAQRISSGDVPELLRDKQIYTLDLAALVAGSKYRGEFEERLKKVMKE 279
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I GDVILFIDE+H L+G+G +D +++LKP+L RGELQ I +TT DE+R
Sbjct: 280 IANKGDVILFIDEIHNLVGAGAA-----EGAIDAASILKPALARGELQTIGATTIDEYRK 334
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQ V + +PS E+AV+IL GLR++YE HH + T EA+ AAV L+ RYI
Sbjct: 335 YLERDSALERRFQQVRVEQPSTEEAVQILQGLRDRYEQHHKVEITDEALVAAVELADRYI 394
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR LPDKAIDLVDEA SR I + PP Q + E + +
Sbjct: 395 ADRQLPDKAIDLVDEAASRKRIR-----------SMGSPP--------VFQEVEEQIAEA 435
Query: 558 RLKYD--------DVVASMGDTSEIVVESSLP-----SASDDDEPAV-VGPDDIAAVASL 603
R K D + AS+ D +V + ++P + +G ++IA + S+
Sbjct: 436 RRKKDAAIEAQEYEAAASLRDEERKLVGKKRELVEQWEQGEGEQPRLSIGEEEIADIVSM 495
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIPV ++T E L+ +EE+L +RVIGQ++AV +S+A++RSR GLKDP RPT + +
Sbjct: 496 WTGIPVFKLTEAETRRLMRMEEELHERVIGQEQAVQVVSKAIRRSRAGLKDPKRPTGSFI 555
Query: 664 FCGPTGVGKTELAKSLAACYFG 685
F GPTGVGKTELAKSLA FG
Sbjct: 556 FLGPTGVGKTELAKSLAHFLFG 577
>gi|357039780|ref|ZP_09101572.1| ATPase AAA-2 domain protein [Desulfotomaculum gibsoniae DSM 7213]
gi|355357586|gb|EHG05359.1| ATPase AAA-2 domain protein [Desulfotomaculum gibsoniae DSM 7213]
Length = 815
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 262/630 (41%), Positives = 373/630 (59%), Gaps = 55/630 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K ++ +Q EAK V T+H+LLGLI+E G+ DK R
Sbjct: 2 LFGRFTQRAQKVLMLAQEEAKRFNHPYVGTEHILLGLISEGEGVAAKALASLGVQADKVR 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V + + QG+ + +M + KRV E +V+ +R G N++ EH
Sbjct: 62 AMV------------EQSIGQGE--GTPREMALTPRVKRVLELSVDEARRMGTNYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL L V+ + + + L G A G+ +
Sbjct: 108 LLLGLIREGEGVAAQVLGALDVNQERVRQIVIQLLGG-----------AGGMSQGQQPQP 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A + G T+ + L+Q+ DLT+ A E+ +DPV+GRE EI+R++QIL RRTKNNP+L+G
Sbjct: 157 GCAGGACG-TKTATLDQYGRDLTSMAREDNLDPVVGREKEIERVVQILSRRTKNNPVLIG 215
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTA+ EGLA RIV VP LL KR+++LD+ L+AG K RGE E R+ ++ EI
Sbjct: 216 DPGVGKTAVVEGLAQRIVAGNVPEILLQKRLVTLDLASLVAGTKYRGEFEERLKKVVEEI 275
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ DVI+FIDE+HT+IG+G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 276 TREKDVIVFIDELHTIIGAGAA----EGA-IDAANILKPALARGELQCIGATTLDEYRKH 330
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+ + EPS E+ V+IL GLR+KYEAHH + T +A+ AA LS RYI+
Sbjct: 331 IERDSALERRFQPITVEEPSVEETVQILTGLRDKYEAHHRVRITDDALKAAARLSDRYIT 390
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR ++ F + PPD D Q I + E
Sbjct: 391 DRFLPDKAIDLMDEAGSRVRLQAF-----------TAPPDVKDLEQRIEEICKEKEAAVN 439
Query: 557 SRLKYDDVVASMGDTSEIVVE----SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
++ +++ + S++ E S + V +DIA + + W+GIPV+++
Sbjct: 440 NQ-EFEKAAQLRDEESKLRQELDGKRSTWQQQKGGKKLEVTAEDIAQIVASWTGIPVKKL 498
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +EE L +RV+GQDEAVAA+SRA++R+R GLKDP RP + +F GPTGVGK
Sbjct: 499 AEEESDRLLRMEEILHQRVVGQDEAVAAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGK 558
Query: 673 TELAKSLAACYFGS----VRIHYLFFPSPF 698
TELA++LA FG VRI + F
Sbjct: 559 TELARALAEAMFGDEDAMVRIDMSEYMEKF 588
>gi|118444397|ref|YP_877171.1| negative regulator of genetic competence clpC/mecB [Clostridium
novyi NT]
gi|118134853|gb|ABK61897.1| Negative regulator of genetic competence clpC/mecB [Clostridium
novyi NT]
Length = 813
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 254/617 (41%), Positives = 373/617 (60%), Gaps = 60/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA + ++++ A+ + T+H+LLGL+ ED+ + L + + +
Sbjct: 2 IFGRFTERAQNILYYAKQAAQEFRHGYIGTEHILLGLLKEDKGMSKNLLNDMNV------ 55
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFS----SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
N ++ + AQ + F + ++P + TKR+ E ++ +R +G+N+I P
Sbjct: 56 --------NEENVKNLIAQYESFGEFELNQKEIPLTPRTKRLLELSLLEARDKGHNYITP 107
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EH+ L L +DG A +L LGV+ L A +L+ + P+L +G + + S
Sbjct: 108 EHMLLALIKKEDGLAYTILNDLGVNFEKLEA----QLEND-------PNLKQGKQVSGES 156
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
+ + +P L++ DLT A E +DPVIGR E +R+++ILCRR KNNP L
Sbjct: 157 NERVSHNTP------TLDKHGRDLTKMAEEGKLDPVIGRGAETERVLEILCRRIKNNPCL 210
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+G+ GVGKTAIAEGLA +IVQ +P L +KR+++LD+ ++AG+K RGE E RV ++
Sbjct: 211 IGDPGVGKTAIAEGLAQKIVQGNIPEILKNKRVIALDISSMVAGSKYRGEFEERVKKIMD 270
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI K +VILFIDE+HT++G+G G +G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 271 EIYKDKNVILFIDEIHTIVGAG----GAEG-AIDASNILKPALARGEIQCIGATTIDEYR 325
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQPV + EP++E+++ IL GLR+KYEAHH K T +AI AAV LS RY
Sbjct: 326 KYIEKDSALERRFQPVNVGEPTKEESIEILKGLRDKYEAHHGVKITDDAIVAAVELSDRY 385
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIE-------LFKRKKEQQTCILSKPPDDYWQEIRTVQA 549
I+DR+LPDKAIDL+DEAG++ I+ L + E + + K Q+ +
Sbjct: 386 ITDRFLPDKAIDLIDEAGAKVRIKNLTAPPSLKDMEAELEKVVKEKEDAVIVQDFEKAAS 445
Query: 550 MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ + + + + D + S +V E +V D IA V S WS +PV
Sbjct: 446 LRDKEKNLKQQLKDFTDNWKKQSHMVTE-------------IVSEDQIAEVVSTWSNVPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+++T E L+ LEE L KRVIGQ+EAV +I+RAV+R+RVGLKD RP + +F GPTG
Sbjct: 493 EKLTEKEADRLLKLEETLHKRVIGQNEAVKSIARAVRRARVGLKDSKRPIGSFIFLGPTG 552
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEAMFGD 569
>gi|242075576|ref|XP_002447724.1| hypothetical protein SORBIDRAFT_06g014590 [Sorghum bicolor]
gi|241938907|gb|EES12052.1| hypothetical protein SORBIDRAFT_06g014590 [Sorghum bicolor]
Length = 921
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 271/619 (43%), Positives = 378/619 (61%), Gaps = 53/619 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 87 VRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 146
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 147 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 193
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D N++ V R+ GE ++
Sbjct: 194 SEHLLLGLLREGEGVAARVLESLGADPNNIRT-QVIRMVGE----------------STE 236
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + LE++ +LT A E +DPV+GR +I+R+ QIL RRTKNNP
Sbjct: 237 AVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRRDQIERVTQILGRRTKNNPC 296
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 297 LIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 356
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+++ D+ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 357 EEIKQNEDIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEY 411
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T +A+ AA LS +
Sbjct: 412 RKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHKLRYTDDALIAAAQLSYQ 471
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YISDR+LPDKAIDL+DEAGSR R + Q +K D ++I + +E V+
Sbjct: 472 YISDRFLPDKAIDLIDEAGSRV------RLRHAQLPDEAKELDKELRQI--TKQKNEAVR 523
Query: 556 GSRL----KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGI 607
+ D + +++ S + E VGP DI + S W+GI
Sbjct: 524 SQDFEKAGELRDREMELKAQITAIIDKSKEMIKAETESGEVGPLVTEADIQHIVSSWTGI 583
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV+++++DE L+ +EE L R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F GP
Sbjct: 584 PVEKVSSDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGP 643
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGK+ELAK+LAA YFGS
Sbjct: 644 TGVGKSELAKALAAYYFGS 662
>gi|425446237|ref|ZP_18826247.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9443]
gi|389733621|emb|CCI02634.1| ATP-dependent Clp protease ATP-binding subunit clpA homolog
[Microcystis aeruginosa PCC 9443]
Length = 795
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 260/608 (42%), Positives = 364/608 (59%), Gaps = 78/608 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL--ESGITIDKAR 138
+FE F ++A+KAV+F+Q EA+ G +V T+HLLLGLI E + + +T+ ++R
Sbjct: 1 MFEYFNQKAIKAVMFAQEEARRTGHSVVGTEHLLLGLIGEATATAALILKDLKVTLHESR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + +G +S +PF+ K++FE A + +R G IAPEH
Sbjct: 61 RVI------------EGMTGRGTGYSPV-NIPFTPKAKKMFEQAFQEARQLGEQAIAPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ L + T + A ++L GVD+ +L+G L K E +A G R + S
Sbjct: 108 LLLAITTDPESLAAKILIMQGVDL--------IKLRGLLLKNAGE-KVASG-RFTASSDY 157
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + L Q+ +L+ IDPVIGRE EIQR+IQIL RR KNNPILLG
Sbjct: 158 EDQKNAP---KGGILAQYSRNLSQEVKNGKIDPVIGREPEIQRVIQILGRRGKNNPILLG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
GVGKTAIAEGLA RI ++P L K++++LDMG L+AG + RG+ E R+ ++ E+
Sbjct: 215 APGVGKTAIAEGLAQRIHNGDIPELLRDKQVIALDMGSLLAGTRFRGDFEERLKGVVEEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+KSG +ILFIDE+HTL+G+G++G +D SNLLKP+L RGELQC+ +TT DE++
Sbjct: 275 RKSGSIILFIDEIHTLVGAGSMG-----GAMDASNLLKPALARGELQCLGATTLDEYKQH 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV++ EP++E A+ IL GL+ YE H K+ +AI AAVHLS+RYI+
Sbjct: 330 IERDAALERRFQPVMVGEPTKEQAIEILRGLKATYEDFHQVKYAQKAIEAAVHLSSRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR H+ + + SK P + +E
Sbjct: 390 DRFLPDKAIDLLDEAGSRTHL---------RYSLQSKSPAEVNEE--------------- 425
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
+ I ES +P VV ++IA + + W+GIPV Q+T E
Sbjct: 426 ------------SPLINPESLIP---------VVDAEEIAQIVAAWTGIPVTQLTETESE 464
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ LE QL +R+IGQ EAV A+SRA++R+RV LK+PNRP A+ +F GPTGVGKTEL K+
Sbjct: 465 SLLNLEYQLHERIIGQQEAVNAVSRAIRRARVNLKNPNRPIASFIFAGPTGVGKTELTKA 524
Query: 679 LAACYFGS 686
LA FGS
Sbjct: 525 LAKLLFGS 532
>gi|168187707|ref|ZP_02622342.1| negative regulator of genetic competence ClpC/mecB [Clostridium
botulinum C str. Eklund]
gi|169294451|gb|EDS76584.1| negative regulator of genetic competence ClpC/mecB [Clostridium
botulinum C str. Eklund]
Length = 813
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 257/617 (41%), Positives = 371/617 (60%), Gaps = 60/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR-HPNGFLESGITIDKARE 139
+F RFTERA + ++Q+ A+ + T+H+L+GL+ ED+ FL
Sbjct: 2 MFGRFTERAQNVLYYAQQSAQEFRHGYIGTEHILMGLLKEDKGMSKKFLND--------- 52
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFS----SAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
+ N + + +Q + F + ++P + TKR+ E ++ +R +G+N+I
Sbjct: 53 ------MNVNEDNVKNLISQYESFGEFELNKKEIPLTPRTKRLLELSLLEARDKGHNYIT 106
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
PEH+ L L +DG A +L LGV+ L A K +P+L +G + +
Sbjct: 107 PEHMLLALIKKEDGLAYTILNDLGVNFEKLQA-----------KLENDPNLKQGKQVSGE 155
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + +P L+++ DLT A E +DPVIGR E +R+++ILCRR KNNP
Sbjct: 156 NNERVTHNTP------TLDKYGRDLTKMAEEGKLDPVIGRGAETERVLEILCRRIKNNPC 209
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+G+ GVGKTAIAEGLA +IVQ +P L +KR+++LD+ ++AG+K RGE E RV ++
Sbjct: 210 LIGDPGVGKTAIAEGLAQKIVQGNIPEILKNKRVVALDISSMVAGSKYRGEFEERVKKIM 269
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI + +VILFIDE+HT++G+G G +G +D SN+LKP+L RGE+QCI +TT DE+
Sbjct: 270 DEIYRDKNVILFIDEIHTIVGAG----GAEG-AIDASNILKPALARGEIQCIGATTIDEY 324
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP++E+++ IL GLR+KYEAHH K T EAI AAV LS R
Sbjct: 325 RKYIEKDSALERRFQPVNVGEPTKEESIEILRGLRDKYEAHHGVKITDEAIVAAVELSDR 384
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI+DR+LPDKAIDL+DEAG++ I+ L+ PP E+ + M E
Sbjct: 385 YITDRFLPDKAIDLIDEAGAKVRIK-----------NLTAPPSLKDMEVELEKIMKEKED 433
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVASLWSGIPV 609
++ + AS+ D E ++ L +D+ + V D IA V S WS +PV
Sbjct: 434 AVIVQDFEKAASLRD-KEKNLKQQLKDFTDNWKKQSHMITETVSEDQIAEVVSTWSNVPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+++T E L+ LEE L KRVIGQ+EAV +I+RAV+R+RVGLKD RP + +F GPTG
Sbjct: 493 EKLTEKEADRLLKLEETLHKRVIGQNEAVKSIARAVRRARVGLKDSKRPIGSFIFLGPTG 552
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEAMFGD 569
>gi|168007899|ref|XP_001756645.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692241|gb|EDQ78599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 933
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 272/642 (42%), Positives = 385/642 (59%), Gaps = 55/642 (8%)
Query: 56 NYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLL 115
++ S N + R +++FERFTE+A+K ++ +Q EA+ LG + V T+ +LL
Sbjct: 73 DFKSVVANSTAVTGHSRPSRGVTTAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILL 132
Query: 116 GLIAEDRH-PNGFLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSI 173
GLI E L+S G+ + +AR V I +G F A ++PF+
Sbjct: 133 GLIGEGTGIAAKVLKSMGVNLKEARVEVEKII------------GRGSGFV-AVEIPFTP 179
Query: 174 STKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233
KRV E ++E +R G+N+I EH+ LGL +G A RVL+ LG D +++ V R+
Sbjct: 180 RAKRVLELSLEEARQLGHNYIGTEHLLLGLLREGEGVAARVLENLGADPSNIR-TQVIRM 238
Query: 234 QGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVI 293
GE N+ + + LE++ +LT A E +DPV+
Sbjct: 239 VGE----------------NTEAVGVGGGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVV 282
Query: 294 GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353
GR +I+R+ QIL RRTKNNP L+GE GVGKTA+AEGLA RI +VP + K++++LD
Sbjct: 283 GRVAQIERVTQILGRRTKNNPCLIGEPGVGKTAVAEGLAQRIASGDVPETIEGKKVITLD 342
Query: 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413
MGLL+AG K RGE E R+ L+ EI+++ D+IL IDEVHTLIG+G +D +N
Sbjct: 343 MGLLVAGTKYRGEFEERLKKLMEEIKQADDIILVIDEVHTLIGAGAAE-----GAIDAAN 397
Query: 414 LLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKY 473
+LKP+L RGELQCI +TT DE+R EKD AL RRFQPVL+ EP+ E+ + IL GLRE+Y
Sbjct: 398 ILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVLVPEPTVEETIDILKGLRERY 457
Query: 474 EAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCIL 533
E HH ++T EA+ AA LS +YISDR+LPDKAIDL+DEAGS+ R K Q L
Sbjct: 458 EIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSKV------RLKHAQ---L 508
Query: 534 SKPPDDYWQEIRTV-QAMHEVVQGSRL----KYDDVVASMGDTSEIVVESSLPSASDDDE 588
+ + +++R V + +E V+G + D + +E + E
Sbjct: 509 PEEARELDKQLRAVTKEKNEAVRGQDFEKAGELRDKEMELKAQISAFIEKGKEQMKAESE 568
Query: 589 PAVVGP----DDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRA 644
VGP DI + + W+GIP++++++DE L+ +E+ L RVIGQDEAV AISRA
Sbjct: 569 TGDVGPTVEESDIQQIVAAWTGIPMEKVSSDESDRLLKMEDTLHTRVIGQDEAVKAISRA 628
Query: 645 VKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+LA+ YFGS
Sbjct: 629 IRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALASYYFGS 670
>gi|126657055|ref|ZP_01728226.1| ATP-dependent Clp protease regulatory subunit [Cyanothece sp.
CCY0110]
gi|126621598|gb|EAZ92308.1| ATP-dependent Clp protease regulatory subunit [Cyanothece sp.
CCY0110]
Length = 788
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 251/606 (41%), Positives = 371/606 (61%), Gaps = 74/606 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FE FT++A+K ++ +Q EA+ +G+++V T+HLLLGL+ + + + G+ ++
Sbjct: 1 MFENFTDKAIKVIMLAQEEAQRMGQNLVGTEHLLLGLLGQGNSLSAKILQGMGLN----- 55
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+T Q + +G FS +PF+ + K++ E + E +R + +++ PE+I
Sbjct: 56 -----LNTTRQAIERLRGKGAGFS-PNNLPFTPTVKQILEKSFEVAR-KDNSYVTPEYIF 108
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L L + + A +VL G+D+ L V RL G EP + KT+
Sbjct: 109 LVLLSDPNTVAVKVLVAQGIDIKELRTTLVKRL-------GEEPVPV------TAGQKTS 155
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
S + + + LEQF DLT +A E +DPV+GR EI+R+IQIL RRTKNNP+L+GE
Sbjct: 156 PFDSFSQPKPT-LEQFGTDLTKKAREGQLDPVVGRTREIERVIQILGRRTKNNPVLVGEP 214
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI++ ++P L ++R+++LDMGLL+AG + RGE E R+ +++ ++++
Sbjct: 215 GVGKTAIAEGLAQRIIEGDIPELLQNQRVIALDMGLLVAGTRFRGEFEERLKSIVKQVKE 274
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
G++IL IDE+HTL+G+G++G +D SNLLKP+L RGELQC+ +TT DE+R E
Sbjct: 275 DGNIILVIDEIHTLVGAGSMG-----GAMDASNLLKPALARGELQCLGTTTLDEYRQHIE 329
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV++ EPS E+ + IL GLR++YEAHH KF+ +A+ AA +L RYISDR
Sbjct: 330 KDTALERRFQPVMVGEPSVEETIEILQGLRKEYEAHHQVKFSQQALEAAANLGERYISDR 389
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGSR H+ +KK Q +
Sbjct: 390 FLPDKAIDLIDEAGSRIHLRHSLQKKMQPS------------------------------ 419
Query: 561 YDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLL 620
E P + D VV +DIA + + W+G+PV ++T E L
Sbjct: 420 -------------FEAEKEAPVINPDSLVPVVDEEDIAQIVTAWTGVPVNKLTETESESL 466
Query: 621 VGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
+ LE+ L +R+IGQ+ AV A+S+AV+RSR+GL++P RP A+ +F GPTGVGKTEL K+LA
Sbjct: 467 MYLEDNLHERIIGQENAVKAVSKAVRRSRIGLQNPKRPIASFIFAGPTGVGKTELTKALA 526
Query: 681 ACYFGS 686
FGS
Sbjct: 527 QFLFGS 532
>gi|299890930|gb|ADJ57429.1| clp protease ATP binding subunit [uncultured prymnesiophyte C19847]
Length = 817
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 261/612 (42%), Positives = 371/612 (60%), Gaps = 52/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGL+ E P G+ + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLLGEGTGLGPKVLKSMGVNLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 TEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LG+D++ + + + L G+ A E ++ G
Sbjct: 108 LLLGLIREGEGVASRVLENLGIDLSRVRSQTIREL-GDNA-------------EATVGGS 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ KSP LE+F +LT +A E +DPV+GR EI+R+IQIL RRTKNNP+L+G
Sbjct: 154 STKSKSP------TLEEFGTNLTQKAVEGRLDPVVGRAKEIERVIQILGRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI ++P L KR+++LD+GLL+AG K RGE E R+ ++ E+
Sbjct: 208 EPGVGKTAIAEGLAQRIANRDIPDTLEDKRVVALDIGLLIAGTKYRGEFEERLKKIMDEV 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + +VIL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT +E+R
Sbjct: 268 RTANNVILIIDEVHTLIGAGAA-----EGAIDAANILKPALSRGELQCIGATTLEEYRKH 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EPS E+ + IL GLR++YE HH + +A+ AA S +YI+
Sbjct: 323 IEKDAALERRFQPVMVGEPSVEETIEILYGLRDRYEKHHKLVISDDALAAAAKFSDQYIA 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR R Q +K D +EI ++ E V+
Sbjct: 383 DRFLPDKAIDLIDEAGSRV------RLMNSQLPAAAKELDGELREI--LKTKDEAVRAQD 434
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIPVQQITA 614
+ + + + + S E + + P +DIA + + W+ IPV ++T
Sbjct: 435 FEKAGQLREREMEIKAQINAIAQSKKGASETSTITPTVTEEDIAQIVAAWTSIPVNKLTK 494
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ +E+ L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTE
Sbjct: 495 SESEKLLKMEDTLHSRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTE 554
Query: 675 LAKSLAACYFGS 686
L K+LA +FGS
Sbjct: 555 LTKALATYFFGS 566
>gi|295702321|ref|YP_003595396.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
megaterium DSM 319]
gi|294799980|gb|ADF37046.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
megaterium DSM 319]
Length = 813
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 262/613 (42%), Positives = 369/613 (60%), Gaps = 57/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLG++ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGIVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ ST + A G+ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LSALGLSTEKIQKEVEALIGRGQELTQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A + G ++
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLHLLGSNEAASSHQ------------GGGSS 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVAREGSLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E++++IL GLR++YEAHH + EAI AV LS RYISDR
Sbjct: 327 KDAALERRFQPIQVDEPTLEESIQILKGLRDRYEAHHRVSISDEAIEQAVKLSDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEV-VQGS 557
+LPDKAIDL+DEAGS+ + F + PP+ + Q++ +V+ + VQ
Sbjct: 387 FLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLESVRNEKDASVQSQ 435
Query: 558 RLKYDDVVASMGDTSEIVVES-----SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ AS+ DT + + E + E + V +DIA V S W+G+PV ++
Sbjct: 436 EFEK---AASLRDTEQRLREELEDTKKIWKEQQGKENSAVTVEDIAMVVSSWTGVPVSKL 492
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +EE L RVIGQ+EAV A+++AV+R+R GLKDP RP + +F GPTGVGK
Sbjct: 493 AQEETERLLNMEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGK 552
Query: 673 TELAKSLAACYFG 685
TELA++LA FG
Sbjct: 553 TELARALAESIFG 565
>gi|398813140|ref|ZP_10571842.1| ATPase with chaperone activity, ATP-binding subunit [Brevibacillus
sp. BC25]
gi|398039301|gb|EJL32439.1| ATPase with chaperone activity, ATP-binding subunit [Brevibacillus
sp. BC25]
Length = 816
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/614 (42%), Positives = 364/614 (59%), Gaps = 53/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + + EA LG + T+H+LLGLI E G+ +DK +
Sbjct: 2 MFGRFTERAQKVLALALEEAVRLGHKDIGTEHVLLGLIREGEGIAAKALQSLGLGLDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMP-FSISTKRVFEAAVEYSRSRGYNFIAPE 197
V S+ +G S + P ++ K+V E +++ +R G+ ++ E
Sbjct: 62 SEVESLI------------GRGTEQSGSNYTPNYTPRAKKVIELSMDEARKLGHTYVGTE 109
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A R++ LGV +N + L +PS G
Sbjct: 110 HILLGLIREGEGIAARIMNNLGVSLNKARQQVLQLLGSSEMMASHQPS-----------G 158
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A +P L+ DLTA A + +DPVIGR+ EI+R+IQ+L RRTKNNP+L+
Sbjct: 159 GNPAANTP------TLDGLARDLTAIARDGGLDPVIGRQKEIERVIQVLSRRTKNNPVLI 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA +IV E+P L KR+M+LDMG ++AG K RGE E R+ ++ E
Sbjct: 213 GEPGVGKTAIAEGLAQKIVNNEIPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKIMDE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQC+ +TT DE+R
Sbjct: 273 IRQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCVGATTLDEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EP+ EDA+RIL GLR++YEAHH K T EAI AV LS RYI
Sbjct: 328 YIEKDAALERRFQPIQVDEPTAEDAIRILHGLRDRYEAHHRVKITDEAIEQAVKLSDRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
++R+LPDKAIDLVDEA S+ ++ F + PP+ E R + E
Sbjct: 388 TERFLPDKAIDLVDEAASKVRLQSF-----------TVPPNLKELEGRLEEVRKEKDAAV 436
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDE-----PAVVGPDDIAAVASLWSGIPVQQI 612
+ + + A++ D + + E + D E V P+DIA V + W+GIPV ++
Sbjct: 437 QSQEFEEAAALRDQEQKLREELDKTKKDWKERQGQLNMEVTPEDIAQVVASWTGIPVLKL 496
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +EE L RVIGQDEAV +ISRA++R+R GLKDP RP + +F GPTGVGK
Sbjct: 497 KEEETERLLKMEEILHDRVIGQDEAVKSISRAIRRARAGLKDPKRPIGSFIFLGPTGVGK 556
Query: 673 TELAKSLAACYFGS 686
TELA+++A FG
Sbjct: 557 TELARAVAETLFGD 570
>gi|226309775|ref|YP_002769669.1| negative regulator of genetic competence [Brevibacillus brevis NBRC
100599]
gi|226092723|dbj|BAH41165.1| negative regulator of genetic competence [Brevibacillus brevis NBRC
100599]
Length = 815
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/614 (42%), Positives = 364/614 (59%), Gaps = 53/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + + EA LG + T+H+LLGLI E G+ +DK +
Sbjct: 1 MFGRFTERAQKVLALALEEAVRLGHKDIGTEHVLLGLIREGEGIAAKALQSLGLGLDKIQ 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMP-FSISTKRVFEAAVEYSRSRGYNFIAPE 197
V S+ +G S + P ++ K+V E +++ +R G+ ++ E
Sbjct: 61 SEVESLI------------GRGTEQSGSNYTPNYTPRAKKVIELSMDEARKLGHTYVGTE 108
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A R++ LGV +N + L +PS G
Sbjct: 109 HILLGLIREGEGIAARIMNNLGVSLNKARQQVLQLLGSSEMMASHQPS-----------G 157
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A +P L+ DLTA A + +DPVIGR+ EI+R+IQ+L RRTKNNP+L+
Sbjct: 158 GNPAANTP------TLDGLARDLTAIARDGGLDPVIGRQKEIERVIQVLSRRTKNNPVLI 211
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA +IV E+P L KR+M+LDMG ++AG K RGE E R+ ++ E
Sbjct: 212 GEPGVGKTAIAEGLAQKIVNNEIPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKIMDE 271
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQC+ +TT DE+R
Sbjct: 272 IRQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCVGATTLDEYRK 326
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EP+ EDA+RIL GLR++YEAHH K T EAI AV LS RYI
Sbjct: 327 YIEKDAALERRFQPIQVDEPTAEDAIRILHGLRDRYEAHHRVKITDEAIEQAVKLSDRYI 386
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
++R+LPDKAIDLVDEA S+ ++ F + PP+ E R + E
Sbjct: 387 TERFLPDKAIDLVDEAASKVRLQSF-----------TVPPNLKELEGRLEEVRKEKDAAV 435
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDE-----PAVVGPDDIAAVASLWSGIPVQQI 612
+ + + A++ D + + E + D E V P+DIA V + W+GIPV ++
Sbjct: 436 QSQEFEEAAALRDQEQKLREELDKTKKDWKERQGQLNMEVTPEDIAQVVASWTGIPVLKL 495
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +EE L RVIGQDEAV +ISRA++R+R GLKDP RP + +F GPTGVGK
Sbjct: 496 KEEETERLLKMEEILHDRVIGQDEAVKSISRAIRRARAGLKDPKRPIGSFIFLGPTGVGK 555
Query: 673 TELAKSLAACYFGS 686
TELA+++A FG
Sbjct: 556 TELARAVAETLFGD 569
>gi|412988426|emb|CCO17762.1| ClpC [Bathycoccus prasinos]
Length = 1022
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 286/688 (41%), Positives = 413/688 (60%), Gaps = 91/688 (13%)
Query: 78 ISSVFERFTERAVKAVIFSQREAK---SLGKDMVFTQHLLLGLIAE--DRHPNGFLESGI 132
IS+VFERFTERA+K+V+ +Q EAK SL + V L++GL+ E D +GFL +G+
Sbjct: 49 ISAVFERFTERAIKSVMLAQLEAKENPSLTE--VTPACLVIGLMVEAKDDGEHGFLNTGV 106
Query: 133 TIDKAREAVVSIWHST------------------NNQDTDDAAAQGKPFSSAAK------ 168
++ +ARE + I ++ + + AA+ +P + K
Sbjct: 107 SVGRAREVLKDIAAASASASASLDDDDSDDDDAKKEKPSPKPAARSRPIAPGKKSSSGSN 166
Query: 169 -MPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL-GLFTVDDGSAGRVLKRLGVDVNHLA 226
+PFS +K +F+ A+E S + +IAPEH+ + T DD ++LG+D L
Sbjct: 167 DVPFSKGSKVLFQQALELSETMNIGYIAPEHLCIVACNTFDDDEIVAFFEKLGIDRTVLR 226
Query: 227 AVAVSRLQ--GELA-------------------KEGREPSLAKGVRENSISGKTA----A 261
A ++L+ GEL K G + + + N+ GK A
Sbjct: 227 NAANAKLEADGELTGSTSSSMSGDNNSNNNNNNKTGLQAK--RPYQSNTQQGKLVQDDPA 284
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
+ + SAL +F DLT +A +DPVIGRE E+ R IQIL R++KNNPILLGE G
Sbjct: 285 QHAGAGAKESALAKFAFDLTEKARSGKVDPVIGREEEVTRCIQILARKSKNNPILLGEPG 344
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA RIV +VP LL KR+ SLD+GL+MAGAKERGELE+RV ++ E+
Sbjct: 345 VGKTAIAEGLAQRIVACDVPSHLLGKRVCSLDIGLIMAGAKERGELESRVKEILQEVADD 404
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
D+IL +DE+HT++G+G V G G+DISNL+KP+L RGEL CI TT DEHR FEK
Sbjct: 405 KDIILVVDEIHTMVGAGAV----NGGGMDISNLMKPALARGELSCIGCTTLDEHRKYFEK 460
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQP+++ EP++E+AV IL G+R K+E HHNCKFT EAI +V +S+RYISDR+
Sbjct: 461 DPALNRRFQPIIVEEPTEEEAVEILFGIRHKFEYHHNCKFTDEAIRESVRISSRYISDRF 520
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQ------------QTCILSKPPDDY---WQEIRT 546
LPDKAIDL+DEAGSRA + ++++++ + +++ P + WQE ++
Sbjct: 521 LPDKAIDLMDEAGSRAKMLSYEKRQKDVAEAKRLEKESGEEEVITAPNAELISLWQEHKS 580
Query: 547 VQ---------AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDI 597
+ + E R + +V + + V + S + +E +V ++I
Sbjct: 581 ITLAKNQAAEAGLFEEAATLRKRELEVTERL---EAMDVNAKGLSLTKSNENLIVTENEI 637
Query: 598 AAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNR 657
A VA+ W+ IPV ++T+DE ++L ++++L K VIGQD AV A++R+++R+R GL + NR
Sbjct: 638 AEVATAWTRIPVTKMTSDESVILQDIDKKLTKSVIGQDVAVQAVARSLRRARCGLANENR 697
Query: 658 PTAAMLFCGPTGVGKTELAKSLAACYFG 685
P A+M+F GPTGVGKTEL K+LA YFG
Sbjct: 698 PIASMMFAGPTGVGKTELTKALAKEYFG 725
>gi|225456471|ref|XP_002284518.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpA
homolog CD4A, chloroplastic-like [Vitis vinifera]
Length = 923
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 270/616 (43%), Positives = 376/616 (61%), Gaps = 51/616 (8%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKA 137
++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + A
Sbjct: 90 AMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDA 149
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E ++E +R G+N+I E
Sbjct: 150 RVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSE 196
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LG D +++ V R+ GE ++ +
Sbjct: 197 HLLLGLLREGEGVAARVLENLGADPSNIR-TQVIRMVGE----------------STEAV 239
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+
Sbjct: 240 GAGVGGGTTGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLI 299
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ E
Sbjct: 300 GEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 359
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 360 IKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRK 414
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EPS ++ ++IL GLRE+YE HH ++T EA+ +A LS +YI
Sbjct: 415 HIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAARLSYQYI 474
Query: 498 SDRYLPDKAIDLVDEAGSRA---HIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
SDR+LPDKAIDL+DEAGSR H +L + +E L K +E +
Sbjct: 475 SDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARE-----LEKELRQITKEKNEAVRSQDFE 529
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPD----DIAAVASLWSGIPVQ 610
+ L+ D + +++ + E +GP DI + S W+GIPV+
Sbjct: 530 KAGELR--DREMDLKAQISTLIDKGKEMTKAETEAGDIGPMVTEVDIQHIVSAWTGIPVE 587
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
+++ DE L+ +EE L +RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGV
Sbjct: 588 KVSTDESDRLLKMEETLHRRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGV 647
Query: 671 GKTELAKSLAACYFGS 686
GK+ELAK+LAA YFGS
Sbjct: 648 GKSELAKALAAYYFGS 663
>gi|332295188|ref|YP_004437111.1| ATPase AAA [Thermodesulfobium narugense DSM 14796]
gi|332178291|gb|AEE13980.1| ATPase AAA-2 domain protein [Thermodesulfobium narugense DSM 14796]
Length = 812
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 253/611 (41%), Positives = 371/611 (60%), Gaps = 56/611 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FE+FTE+A KA+I +Q EAK LG + V T+H+LLGL+AE G I
Sbjct: 1 MFEKFTEKAAKAIILAQEEAKRLGHNFVGTEHILLGLLAE----------GTGIANKVIN 50
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ I ++ + +G + +++PF+ KRV E + E +R G+N I EHI
Sbjct: 51 SMDIEPQDIRREVERLIGRGGG-TLISEIPFTPRAKRVLELSWEEARLLGHNHIGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G RVLK +D+ + + + + G G
Sbjct: 110 LGLLREGEGIGARVLKSFNMDIGKVRSQIIQIISG---------------------GSVI 148
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
K GRT L +F DLTA A E+ +DPVIGR+ EI+R+IQI+CRRTKNNP+L+G+
Sbjct: 149 KSKESGRT--PLLNEFGRDLTALAREKKLDPVIGRDKEIRRLIQIMCRRTKNNPVLIGDP 206
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAI EGLA IV VP L KR++SLD+GLL+AG K RGE E R+ + EI+
Sbjct: 207 GVGKTAIVEGLAQAIVDNNVPPMLRKKRLISLDLGLLIAGTKYRGEFEDRLKKITEEIKN 266
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HT++G+G +D +N+LKP+L RGE+QCI +TT +++R E
Sbjct: 267 AGNIILFIDELHTIVGAGAA-----EGAVDAANILKPALARGEIQCIGATTVEDYRKHLE 321
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD L RRF P+ + EP+QE+A++IL GL+EKYEAHH K T +AI ++V L+ RYISDR
Sbjct: 322 KDAGLERRFHPIHVEEPTQEEAIQILFGLKEKYEAHHGVKITEDAITSSVKLAKRYISDR 381
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAID++DEA ++ + + ++S+ + ++++ V E V R++
Sbjct: 382 FLPDKAIDILDEASAKVKL---------KEPVMSEAWKELYKKLENVIEEKENV--IRMQ 430
Query: 561 YDDVVASMGDTSEIVVESSLPSASDDD-----EPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ A + D +E + + + S ++ + E VV +DIA V S W+GI ++++T
Sbjct: 431 DFEKAAVLRD-NEQKIRNEISSFTNQEEVNALEVKVVTEEDIAEVVSEWTGIELKKLTES 489
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LEE L KR++ Q EAV +I++ ++R+R GL+DP +P + LF GPTGVGKTEL
Sbjct: 490 EMKKLLNLEEALHKRIVSQHEAVVSIAKTLRRTRAGLQDPKKPLGSFLFLGPTGVGKTEL 549
Query: 676 AKSLAACYFGS 686
AK+LA FGS
Sbjct: 550 AKTLAEYLFGS 560
>gi|384049297|ref|YP_005497314.1| Class III stress response ATPase, ClpC [Bacillus megaterium
WSH-002]
gi|345446988|gb|AEN92005.1| Class III stress response ATPase, ClpC [Bacillus megaterium
WSH-002]
Length = 813
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 262/613 (42%), Positives = 369/613 (60%), Gaps = 57/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLG++ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGIVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ ST + A G+ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LSALGLSTEKIQKEVEALIGRGQELTQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A + G ++
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLHLLGSNEAASSHQ------------GGGSS 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVAREGSLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E++++IL GLR++YEAHH + EAI AV LS RYISDR
Sbjct: 327 KDAALERRFQPIQVDEPTLEESIQILKGLRDRYEAHHRVSISDEAIEQAVKLSDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEV-VQGS 557
+LPDKAIDL+DEAGS+ + F + PP+ + Q++ +V+ + VQ
Sbjct: 387 FLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLESVRNEKDASVQSQ 435
Query: 558 RLKYDDVVASMGDTSEIVVES-----SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ AS+ DT + + E + E + V +DIA V S W+G+PV ++
Sbjct: 436 EFEK---AASLRDTEQRLREELEDTKKIWKEQQGKENSAVTVEDIAMVVSSWTGVPVSKL 492
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +EE L RVIGQ+EAV A+++AV+R+R GLKDP RP + +F GPTGVGK
Sbjct: 493 AQEETERLLNMEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGK 552
Query: 673 TELAKSLAACYFG 685
TELA++LA FG
Sbjct: 553 TELARALAESIFG 565
>gi|294496954|ref|YP_003560654.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
megaterium QM B1551]
gi|294346891|gb|ADE67220.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
megaterium QM B1551]
Length = 812
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 262/613 (42%), Positives = 369/613 (60%), Gaps = 57/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLG++ E GI A +A
Sbjct: 1 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGIVREG--------EGI----AAKA 48
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ ST + A G+ + ++ K+V E +++ +R G++++ EHI
Sbjct: 49 LSALGLSTEKIQKEVEALIGRGQELTQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 108
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A + G ++
Sbjct: 109 LGLIREGEGVAARVLNNLGVSLNKARQQVLHLLGSNEAASSHQ------------GGGSS 156
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 157 NANTP------TLDSLARDLTVVAREGSLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIVNNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E++++IL GLR++YEAHH + EAI AV LS RYISDR
Sbjct: 326 KDAALERRFQPIQVDEPTLEESIQILKGLRDRYEAHHRVSISDEAIEQAVKLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEV-VQGS 557
+LPDKAIDL+DEAGS+ + F + PP+ + Q++ +V+ + VQ
Sbjct: 386 FLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLESVRNEKDASVQSQ 434
Query: 558 RLKYDDVVASMGDTSEIVVES-----SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ AS+ DT + + E + E + V +DIA V S W+G+PV ++
Sbjct: 435 EFEK---AASLRDTEQRLREELEDTKKIWKEQQGKENSAVTVEDIAMVVSSWTGVPVSKL 491
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +EE L RVIGQ+EAV A+++AV+R+R GLKDP RP + +F GPTGVGK
Sbjct: 492 AQEETERLLNMEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGK 551
Query: 673 TELAKSLAACYFG 685
TELA++LA FG
Sbjct: 552 TELARALAESIFG 564
>gi|242624367|ref|YP_003002285.1| ATP-dependent clp protease ATP-binding subunit [Aureoumbra
lagunensis]
gi|239997475|gb|ACS36997.1| ATP-dependent clp protease ATP-binding subunit [Aureoumbra
lagunensis]
Length = 833
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 264/621 (42%), Positives = 372/621 (59%), Gaps = 64/621 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-----FLES-GITI 134
+FERFTE+A+K V+ SQ E++ LG + V T+ +LLGLI E NG L S G+T+
Sbjct: 1 MFERFTEKAIKVVMLSQEESRRLGHNFVGTEQILLGLIGE----NGGVAYKVLRSLGVTL 56
Query: 135 DKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
+AR V I +G F A ++PF+ KRV E A+E +R G+ +I
Sbjct: 57 REARTEVERII------------GRGSGFV-AVEIPFTPRAKRVLEIAIEEARDLGHGYI 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI L L + G RVL++LG++V+ + + ++ L E
Sbjct: 104 GTEHILLALLEEEVGVGVRVLQQLGLEVSQIRTEVLMQIGETL--------------EVV 149
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+ G + ++E+F +LT A +DPV+GR+ EI+R+IQIL RR KNNP
Sbjct: 150 LGGDRSEFFE---MSGVSIEEFTTNLTEAAFNGKLDPVVGRDEEIERVIQILARRRKNNP 206
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+AEGLA RIV+ +VP L K+++SLD+GLL+AG K RGE E R+ +
Sbjct: 207 VLIGEPGVGKTAVAEGLAQRIVKRDVPDLLDEKQVISLDIGLLLAGTKYRGEFEERLKRI 266
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
I E++ S ++IL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE
Sbjct: 267 IDEVRSSNNIILVIDEVHTLIGAGAA-----EGAVDAANILKPALARGELQCIGATTIDE 321
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R E+D AL RRFQPV I EPS D V+IL LR YE HH K + EA+ AA + A
Sbjct: 322 YRKHIERDSALERRFQPVQIDEPSVSDTVQILRCLRPSYERHHGLKISDEALEAAASMGA 381
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
+YI+DR+LPDKAIDL+DEAGSR ++ + + D +E+R + +
Sbjct: 382 QYIADRFLPDKAIDLIDEAGSRVRLKAVR---------MPDAASDLDRELRDIIKEKDTA 432
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA---------VVGPDDIAAVASLWS 605
+ ++ ++ E+ + S A+ D P VV DDIA V S W+
Sbjct: 433 IADQ-NFEVAATALDRELELRAQLSAILATVDRIPGPAIKKMVDPVVTEDDIANVVSAWT 491
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV +I+ E L+ +EE L R+IGQ++AV+A+SRA++R+RVGL++PNRP A+ LF
Sbjct: 492 GIPVNKISKSESEKLLHMEETLHSRIIGQEQAVSAVSRAIRRARVGLRNPNRPIASFLFS 551
Query: 666 GPTGVGKTELAKSLAACYFGS 686
GPTGVGKTEL K+LA +FG+
Sbjct: 552 GPTGVGKTELTKALALYFFGA 572
>gi|172035917|ref|YP_001802418.1| ATP-dependent Clp protease regulatory subunit [Cyanothece sp. ATCC
51142]
gi|354556035|ref|ZP_08975333.1| ATPase AAA-2 domain protein [Cyanothece sp. ATCC 51472]
gi|171697371|gb|ACB50352.1| ATP-dependent Clp protease, regulatory subunit [Cyanothece sp. ATCC
51142]
gi|353552034|gb|EHC21432.1| ATPase AAA-2 domain protein [Cyanothece sp. ATCC 51472]
Length = 789
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 253/609 (41%), Positives = 369/609 (60%), Gaps = 79/609 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FE FT++A+K ++ +Q EA+ +G+++V T+HLLLGL+ + + + G+ ++
Sbjct: 1 MFENFTDKAIKTIMLAQEEAQRMGQNLVGTEHLLLGLLGQGNSLSAKILQGMGLN----- 55
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+T Q + +G FS +PF+ + K++ E + E +R + +++ PE+I
Sbjct: 56 -----LTTTRQAIEKLRGKGVGFS-PNNLPFTPTVKQILEKSFEVAR-KDNSYVTPEYIF 108
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL---AKEGREPSLAKGVRENSISG 257
L L + + A +VL G+D+ L V RL E G++PS
Sbjct: 109 LVLLSDPNTVAVKVLVAQGIDIQQLRTTLVKRLGEEEPIPVTAGQKPS------------ 156
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ P T LEQF DLT +A E +DPV+GR EI+R+IQ+L RRTKNNP+L+
Sbjct: 157 PFDSFSQPKPT----LEQFGTDLTKKAREGQLDPVVGRTREIERVIQVLGRRTKNNPVLV 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RIV+ ++P L KR+++LDMGLL+AG + RGE E R+ +++++
Sbjct: 213 GEPGVGKTAIAEGLAQRIVEGDIPELLQDKRVIALDMGLLVAGTRFRGEFEERLKSIVNQ 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+++ G++IL IDE+HTL+G+G++G +D SNLLKP+L RGELQC+ +TT DE+R
Sbjct: 273 VKEDGNIILVIDEIHTLVGAGSMG-----GAMDASNLLKPALARGELQCLGTTTLDEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV++ EPS E+ + IL GLR++YEAHH KF+ EA+ AA L RYI
Sbjct: 328 HIEKDAALERRFQPVMVGEPSVEETIEILQGLRKEYEAHHQVKFSQEALEAAASLGERYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
SDR+LPDKAIDL+DEAGSR H+ +KK Q +
Sbjct: 388 SDRFLPDKAIDLIDEAGSRIHLRHSLQKKMQPS--------------------------- 420
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADER 617
E P + D VV +DIA + + W+G+PV ++T E
Sbjct: 421 ----------------FEAEQEAPVINPDSLVPVVDEEDIAQIVTSWTGVPVNKLTETES 464
Query: 618 MLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAK 677
L+ LE+ L +R+IGQ+EAV A+S+A++RSR+GL++P RP A+ +F GPTGVGKTEL K
Sbjct: 465 ESLMYLEDNLHERIIGQEEAVKAVSKAIRRSRIGLQNPKRPIASFIFAGPTGVGKTELTK 524
Query: 678 SLAACYFGS 686
+LA FGS
Sbjct: 525 ALAQFLFGS 533
>gi|89100727|ref|ZP_01173582.1| class III stress response-related ATPase [Bacillus sp. NRRL
B-14911]
gi|89084544|gb|EAR63690.1| class III stress response-related ATPase [Bacillus sp. NRRL
B-14911]
Length = 817
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 268/610 (43%), Positives = 372/610 (60%), Gaps = 52/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHSNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ + + G+ S+ ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LYALGLGSEKIQKEVENLIGRGQDSSQTPHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G S G + G A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG---------SNDSGSHQ---GGSAA 156
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ +P L+ DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 157 SANTP------TLDSLARDLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEGA-IDASNILKPSLARGELQCIGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ +++V+IL GLR++YEAHH T EAI AAV LS RYISDR
Sbjct: 326 KDAALERRFQPITVDEPTADESVQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGS+ + + + PP+ E++ + E + +
Sbjct: 386 FLPDKAIDLIDEAGSKVRLRSY-----------TTPPNLKELELKLEEVRKEKDAAVQSQ 434
Query: 561 YDDVVASMGDTSEIV---VESSLPSASDDD--EPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D+ + + +E + S + E + V DDIA V + W+GIPV ++
Sbjct: 435 EFEKAASLRDSEQRLREQLEETKKSWKEKQGKENSEVTVDDIAHVVASWTGIPVAKLAQT 494
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +EE L RVIGQ+EAV AIS+AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 495 ETAKLLNMEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFVFLGPTGVGKTEL 554
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 555 ARALAEAMFG 564
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 13/93 (13%)
Query: 79 SSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAED-----RHPNGFLESGIT 133
SS +T RA K + S EA+ LG V T+H+LLGLI E R N G++
Sbjct: 74 SSQTPHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNL---GVS 130
Query: 134 IDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSA 166
++KAR+ V+ + S D + QG +SA
Sbjct: 131 LNKARQQVLQLLGS-----NDSGSHQGGSAASA 158
>gi|403071334|ref|ZP_10912666.1| ATP-dependent Clp protease [Oceanobacillus sp. Ndiop]
Length = 809
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 261/612 (42%), Positives = 361/612 (58%), Gaps = 55/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + SQ EA LG + + T+H+LLGL+ E G+ + K +
Sbjct: 2 MFGRFTERAQKVLALSQEEAVRLGHNNIGTEHILLGLVREGEGIAAKALQSLGLEVSKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V + +P S P K+V E + + +R G++++ EH
Sbjct: 62 EEVEKLI-----------GVGKQPMQSIHYTP---RAKKVVELSQDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N + L ++ GR+ +G+
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESQAGRQGR----------TGQ 157
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P L+ DLT A E IDPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 158 QSNASTP------TLDSLARDLTVSAKEGKIDPVIGRAKEIERVIQVLSRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAVAEGLAQQIIDNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 272 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E+ ++IL GLR++YEAHH T EAI AA LS RYI+
Sbjct: 327 IEKDAALERRFQPIQVDEPTLEETIQILNGLRDRYEAHHRVTITDEAIEAAATLSDRYIT 386
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ E + + E +
Sbjct: 387 DRFLPDKAIDLIDEAGSKVRLHSY-----------TVPPNLKELEQKLEEVRKEKDAAVQ 435
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + AS+ D SE L D+ + V +DIA+V S+W+G+PV ++
Sbjct: 436 SQEFEKAASLRD-SEQRFREELEKTKDEWKEKQGQTDSEVTVEDIASVVSIWTGVPVSKL 494
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T DE L+ +E L RVIGQ EAV A+S+A++R+R GLKDP RP + +F GPTGVGK
Sbjct: 495 TKDESERLLNMESVLHNRVIGQSEAVDAVSKAIRRARAGLKDPKRPIGSFIFLGPTGVGK 554
Query: 673 TELAKSLAACYF 684
TELA++LA F
Sbjct: 555 TELARALAEVMF 566
>gi|225175258|ref|ZP_03729254.1| ATPase AAA-2 domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225169434|gb|EEG78232.1| ATPase AAA-2 domain protein [Dethiobacter alkaliphilus AHT 1]
Length = 818
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 259/614 (42%), Positives = 364/614 (59%), Gaps = 56/614 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K ++ +Q EAK V T+H+L+GL+ E L G+ +D R
Sbjct: 3 MFGRFTERAQKVLVLAQDEAKRFNHSFVGTEHILMGLVREGEGIAAKVLLSLGMQLDSVR 62
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + +G S + ++ K+V E A+E ++ G+N++ EH
Sbjct: 63 SEIEKLI------------GKGDQRSLPQGVNYTPRAKKVIELAIEEGQNLGHNYVGTEH 110
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL +GVD+ ++ L E EP
Sbjct: 111 LLLGLIREGEGIAAQVLTNMGVDLTRARKSVLALLGDEDEPLPEEPG------------- 157
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
K+P T ++QF DLT A + +DPVIGR+ EI+R+IQ+L RRTKNNP L+G
Sbjct: 158 ----KAPSST--PTVDQFGRDLTKLAKDNKLDPVIGRDIEIERVIQVLSRRTKNNPCLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI++ +VP L KR+ +L++ ++AG K RGE E R+ L+ E+
Sbjct: 212 EPGVGKTAIAEGLAQRIIEGKVPENLRDKRVATLELAAVVAGTKYRGEFEERLRKLMEEL 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+G+VI+FIDE+HTLIG+G +D SN+LKP+L RGELQ I +TT DE+R
Sbjct: 272 HAAGNVIVFIDELHTLIGAGAAE-----GAIDASNILKPALARGELQAIGATTLDEYRKH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+ + EPS+E+++ IL GLR++YEAHH K T EA+N+AV L+ RYI+
Sbjct: 327 IERDPALERRFQPITVGEPSKEESLEILKGLRDRYEAHHRVKITDEALNSAVQLADRYIT 386
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA SR ++ + + PPD E R +E R
Sbjct: 387 DRFLPDKAIDLIDEAASRVRMKAY-----------TAPPDLKEMEGRLDTLRNEKESAVR 435
Query: 559 LKYDDVVASMGDTSEIVVE--SSLPSASDD----DEPAVVGPDDIAAVASLWSGIPVQQI 612
+ +V A + D + + E SL + D +VV +DIA + S W+GIPV+++
Sbjct: 436 GQEFEVAAQLRDKEQQLKEELQSLKKEWEQRKSTDTQSVVS-EDIAQIVSAWTGIPVKRL 494
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
A+E L+ +E L KRVIGQDEAV AISRA++R+R GLKDP RP + +F GPTGVGK
Sbjct: 495 AAEETERLLNMESILHKRVIGQDEAVKAISRAIRRARAGLKDPKRPIGSFIFLGPTGVGK 554
Query: 673 TELAKSLAACYFGS 686
TELA++LA FG
Sbjct: 555 TELARALAESLFGD 568
>gi|302390927|ref|YP_003826747.1| ATPase AAA [Acetohalobium arabaticum DSM 5501]
gi|302203004|gb|ADL11682.1| ATPase AAA-2 domain protein [Acetohalobium arabaticum DSM 5501]
Length = 813
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 272/607 (44%), Positives = 366/607 (60%), Gaps = 44/607 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K ++ +Q EAK LG V T+HLLLGLI+E + K+ E
Sbjct: 2 IFGRFTERARKVLVLAQEEAKDLGHSYVGTEHLLLGLISEGEGIASKTLEDFDL-KSEEL 60
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V + N+ D +G P A K+ F+ TK+V A+E +R G N+I EH+
Sbjct: 61 KVEV-----NKLIGD---KGSPVQ-ADKLNFTPRTKKVLNLAMEEARRLGQNYIGTEHLL 111
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVLK GV+++ L ++ L + K
Sbjct: 112 LGLVKEGEGVAARVLKNSGVELDKLRKKIMNEL--------------------GTTEKAG 151
Query: 261 ALKSPGRTRAS---ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
GR R S L+ F DLTA A EE +DPVIGR+ EIQR+IQ+L RR KNNP L+
Sbjct: 152 KFNQQGRKRNSNTPTLDDFSRDLTALAEEEKLDPVIGRKQEIQRVIQVLSRRKKNNPCLI 211
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA+ I +VP L KR+++LD+ L+AG+K RGE E R+ +++E
Sbjct: 212 GEPGVGKTAIAEGLALMIANDDVPETLTDKRVLALDLSSLVAGSKYRGEFEKRLKAVMNE 271
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I ++GD+I+FIDE+H L+G+G G +G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 272 INEAGDIIIFIDELHNLVGAG----GAEG-AIDAANILKPALARGELQCIGATTLDEYRK 326
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQ VL+ EPS E+ V IL GLR+ YEAHH K T EAI AA +LS RYI
Sbjct: 327 HIEKDSALERRFQSVLVEEPSIEETVSILEGLRDVYEAHHRVKITDEAIKAAANLSHRYI 386
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDLVDEAGS+ I L + L+K + +E E + +
Sbjct: 387 TDRFLPDKAIDLVDEAGSK--IRLQDNTVPSEIKELNKELESVEKEKEAAVKAQEFEKAA 444
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADER 617
L+ +S + DE +++ +DIA + S WSG+PV ++T DE
Sbjct: 445 NLRD---KEKQLKEELEETKSEWKNQKGRDE-SLITKEDIAEIVSDWSGVPVTKLTEDES 500
Query: 618 MLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAK 677
L+ LEE+L +R++GQDEA+ A+S+AV+R+R GLKDP RP + +F GPTGVGKTELAK
Sbjct: 501 KKLLRLEEELHERIVGQDEAIEAVSQAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELAK 560
Query: 678 SLAACYF 684
+LA F
Sbjct: 561 TLAEAMF 567
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 77 PISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITI 134
P+ + FT R K + + EA+ LG++ + T+HLLLGL+ E SG+ +
Sbjct: 74 PVQADKLNFTPRTKKVLNLAMEEARRLGQNYIGTEHLLLGLVKEGEGVAARVLKNSGVEL 133
Query: 135 DKAREAVVSIWHST 148
DK R+ +++ +T
Sbjct: 134 DKLRKKIMNELGTT 147
>gi|304405673|ref|ZP_07387332.1| ATPase AAA-2 domain protein [Paenibacillus curdlanolyticus YK9]
gi|304345712|gb|EFM11547.1| ATPase AAA-2 domain protein [Paenibacillus curdlanolyticus YK9]
Length = 822
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/612 (42%), Positives = 367/612 (59%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALIGLGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVEALIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLG------------------SSEAV 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+++ +P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 149 SSSHGAPANVSTPTLDGLARDLTAFAREGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQKIIAGEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ ++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQANNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+A++IL GLR++YEAHH K T EAI AV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPSPEEAIQILHGLRDRYEAHHRVKITDEAIEQAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ ++ + + PP+ E R E +
Sbjct: 384 DRFLPDKAIDLIDEASSKVRLKTY-----------TVPPNLKLLENRLEDIRKEKDSAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ DT + + E + + E + V P+DIA V + W+G+PV ++
Sbjct: 433 SQEFEKAAALRDTEQKLREELDITRNQWKEKQGRTDSEVTPEDIAQVVASWTGVPVSKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE L RVIGQ +AV A+SRA++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETQRLLKMEEILHDRVIGQTDAVKAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESIFG 564
>gi|320159863|ref|YP_004173087.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Anaerolinea
thermophila UNI-1]
gi|319993716|dbj|BAJ62487.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
[Anaerolinea thermophila UNI-1]
Length = 839
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 261/612 (42%), Positives = 368/612 (60%), Gaps = 41/612 (6%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKA 137
S ERFT+RA + + + +EA+ L +D + T+HLLLGLI ED G E G+ D+
Sbjct: 2 SGMERFTQRARRVLSLAHQEAERLRQDTINTEHLLLGLIEEDGGIAGRVLRELGLEPDRV 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
RE V + G K+ + T++V E A+E +R G+++I E
Sbjct: 62 REMVERLG--------------GIGTYRGGKIDLAPGTQQVLEYAIEEARRMGHHYIGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL DG VL++LGV A + R + +E SG
Sbjct: 108 HLLLGLVRSTDGLGMEVLRKLGV-----TAEQIRRQTRRILQESSSAPTGAPAGTAPASG 162
Query: 258 KTA-ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
+ A A + R + ++Q VDLTA+A E +DPVIGR+ EI+R+IQIL RR+KNNP L
Sbjct: 163 RPASARQEKERPKTPLVDQLAVDLTAKAEEGKLDPVIGRQMEIERVIQILARRSKNNPAL 222
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAI EGLA RIV+ +VP LL KR++ LD+G L+AG RG+ E R+ +I
Sbjct: 223 IGEPGVGKTAIVEGLAQRIVEGDVPPLLLGKRVLQLDVGSLVAGTMYRGQFEERLKRVID 282
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
E++ SG ILFIDEVH L+G+G G + +D +N+LKP+L RGELQ I +TT DE+R
Sbjct: 283 ELKSSG-AILFIDEVHMLVGAGAAG-----SSVDAANILKPALSRGELQVIGATTLDEYR 336
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
E D AL RRFQP++++EPS E+ + IL G++ YE HH T EA+ AA LSARY
Sbjct: 337 KHIESDAALERRFQPIIVNEPSIEETIEILKGIKTAYEEHHRLTITDEALEAAAKLSARY 396
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEV-VQ 555
++DR+LPDKAIDLVDEA SR + ++K + + +++R V+ H + V+
Sbjct: 397 VTDRFLPDKAIDLVDEAASR--VRMYKSSA-------AATAREIMKKLREVRQNHALAVE 447
Query: 556 GSRLKYDDVVASMGDTSEIVVE-SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITA 614
R+ DD + +E+ + L + D V DDIA V S+W+G+PV Q+
Sbjct: 448 DGRM--DDAQEFLEREAELEEQLERLRTGWDRAASPKVTADDIAEVVSMWTGVPVMQMAT 505
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
+E L+ +EE+L+K ++GQDEA+ AI++AV+R+R GLKDP RP + +F GPTGVGKTE
Sbjct: 506 EESERLLHMEEELRKHIVGQDEAIDAIAKAVRRARAGLKDPRRPIGSFIFLGPTGVGKTE 565
Query: 675 LAKSLAACYFGS 686
L K+LA FGS
Sbjct: 566 LTKALARFMFGS 577
>gi|428211805|ref|YP_007084949.1| chaperone ATPase [Oscillatoria acuminata PCC 6304]
gi|428000186|gb|AFY81029.1| ATPase with chaperone activity, ATP-binding subunit [Oscillatoria
acuminata PCC 6304]
Length = 828
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 257/620 (41%), Positives = 378/620 (60%), Gaps = 62/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FE FTE+++KA++ +Q+EA+ LG + V T+ LLLGLIAE G+T++KAR
Sbjct: 1 MFEYFTEKSIKAIMLAQQEARRLGHNFVGTEQLLLGLIAEGTGIAAQVLKSEGVTLNKAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F ++PF+ K + E ++ + G +IA EH
Sbjct: 61 VEVEKII------------GRGSGFVPV-EIPFTPRGKSILEMSLREASQLGQQYIATEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ L L +G A ++L+ LGV + + A + R+ G P+ A V G+
Sbjct: 108 LLLALTQSREGVAFKILENLGVSLERVRAEVIKRV-------GENPAPAGAV----FGGE 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ PG +A L +F V+LT +A E +DPV+GR+ EI+RIIQIL RRTKNNP+L+G
Sbjct: 157 RG--RGPGSQKALQLSEFGVNLTEKALEGNLDPVVGRKKEIERIIQILGRRTKNNPVLVG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA RI +VP L K++ +LDMG ++AG + RG+ E R+ ++ E+
Sbjct: 215 EPGVGKTALAEGLAQRIANQDVPETLKDKQVFTLDMGSILAGTRFRGDFEERIKMIMEEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ ++IL IDE+HTL+G+G+V G+D +NLLKP+L RGE QCI +TT DE+R
Sbjct: 275 RQAKNIILVIDEIHTLVGAGSV-----EGGMDAANLLKPALARGEFQCIGATTLDEYRKH 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV I EP+ ++ + IL G+R +YE HH + EA+ AA LS RYI+
Sbjct: 330 IERDAALERRFQPVTIGEPTIQETIEILQGVRVRYEEHHKLTISDEALVAAAELSERYIT 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAIDL+DEAGSR + K R+ ++Q L++ + +RT +
Sbjct: 390 DRFLPDKAIDLIDEAGSRVRLRNGKMPSALRQMKKQ---LTEVTAEKEAAVRT----QDF 442
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA-------VVGPDDIAAVASLWSG 606
+ S+L+ E+ +E L ++ VV +DIA + + W+
Sbjct: 443 EKASKLR----------DRELTLEEELDQRIKNEHAEVQNTKNLVVTGEDIAQIVAFWTS 492
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV ++T E L+ +EE L +R+IGQ+EAV A+SRA++R+RVGLK+PNRP A+ +F G
Sbjct: 493 VPVSKLTESESEKLMLMEETLHQRLIGQEEAVKAVSRAIRRARVGLKNPNRPIASFIFSG 552
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTEL K+LAA +FGS
Sbjct: 553 PTGVGKTELTKALAAYFFGS 572
>gi|170757820|ref|YP_001783151.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum B1 str. Okra]
gi|429246823|ref|ZP_19210119.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum CFSAN001628]
gi|169123032|gb|ACA46868.1| putative negative regulator of genetic competence MecB/ClpC
[Clostridium botulinum B1 str. Okra]
gi|428756157|gb|EKX78733.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum CFSAN001628]
Length = 811
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/612 (41%), Positives = 362/612 (59%), Gaps = 52/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+F RFTERA K ++ +Q EA+ V T+H+LLG++ ED L + IT DK R+
Sbjct: 2 MFGRFTERAQKVLMNAQEEAEKFKHGYVGTEHILLGILIEDGVAKELLNNFSITEDKVRQ 61
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ + +G+ ++P + TKR+ E ++ +R+ +N+I PEHI
Sbjct: 62 LI------------ERYEGKGEMDLYKNEIPLTPRTKRLLEMSLLEARNLNHNYITPEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A +L LG+D L + L G+ + K
Sbjct: 110 LLGLIREAEGVAFTILSNLGLDAERLRKELIKNLSGQE------------------TPKD 151
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
K ++ L+QF DLT A E +DPVIGR+ E QR+++ILCRRTKNNP L+GE
Sbjct: 152 EGSKKSSKSSTPTLDQFGRDLTEMAEEGKVDPVIGRDKETQRVLEILCRRTKNNPCLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA I+ +P L +KR+++LD+ ++AGAK RGE E R+ ++ E++
Sbjct: 212 PGVGKTAIAEGLAQNIIDGNIPEILKNKRVVTLDLTSMIAGAKYRGEFEDRLKKIMEEVR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
S D ILFIDE+HT++G+G +D +N+LKP+L RGE+QCI +TT DE+R
Sbjct: 272 SSKDTILFIDEIHTIVGAGAAE-----GAIDAANILKPALARGEIQCIGATTLDEYRKYI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EP++E+ + IL GLR+KYEAHH KFT +AI AAV+LS RYI D
Sbjct: 327 EKDSALERRFQPINVGEPTKEETIEILKGLRDKYEAHHRVKFTDDAIYAAVNLSDRYIRD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEAGS+ I+ L PPD E + + + E R+
Sbjct: 387 RFLPDKAIDLMDEAGSKVRIQ-----------NLIAPPDLKNIEEQLDKVVKEKEDAIRV 435
Query: 560 KYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ + A++ D + + E D + +V IAAV S W+ IPV ++T
Sbjct: 436 QDFEKAANLRDKEKELKEKLEGLKKDWNAEKEGSNLIVSEQQIAAVVSNWTNIPVNKLTE 495
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ LE+ L RVIGQ+EA+ ++SR+V+R+RVGLKDP RP + +F GPTGVGKTE
Sbjct: 496 KESERLLKLEDILHNRVIGQEEAIKSVSRSVRRARVGLKDPKRPIGSFIFLGPTGVGKTE 555
Query: 675 LAKSLAACYFGS 686
L K+LA FG+
Sbjct: 556 LTKALAEAMFGN 567
>gi|358446330|ref|ZP_09156877.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
casei UCMA 3821]
gi|356607742|emb|CCE55201.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
casei UCMA 3821]
Length = 905
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/620 (41%), Positives = 371/620 (59%), Gaps = 46/620 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIQEGEGVAAKALESMGISLEDVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V +I H T + +PF+ K+V E ++ G+ +I E
Sbjct: 61 GEVEAIIGHGTQPHN--------------GHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
+ LGL +G A +VL +LG D+ + + L G +G +P G
Sbjct: 107 FLLLGLIREGEGVAAQVLTKLGADLPRVRQQVIQLLSGYEGNQGEKPEAGPGPVGAGTGP 166
Query: 258 KTAALKSPG----RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN 313
+ + PG R+ + L+QF +LT A + +DPV+GRE+EI+RI+Q+L RRTKNN
Sbjct: 167 QNPGRQGPGNQGERSNSLVLDQFGRNLTQAAKDGKLDPVVGRESEIERIMQVLSRRTKNN 226
Query: 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373
P+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+
Sbjct: 227 PVLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQVYSLDLGSLVAGSRYRGDFEERLKK 286
Query: 374 LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433
++ EI + GD+ILFIDE+HTL+G+G +G +D ++LLKP L RGELQ I +TT D
Sbjct: 287 VLKEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASLLKPKLARGELQTIGATTLD 341
Query: 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493
E+R EKD AL RRFQPV + EPS ED + IL GLR+KYEAHH +T +A+ AA LS
Sbjct: 342 EYRKHIEKDAALERRFQPVKVDEPSMEDTITILRGLRDKYEAHHRVSYTDDALKAAASLS 401
Query: 494 ARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEV 553
RYI+DR+LPDKA+DL+DEAG+R I+ K + DD E+R +
Sbjct: 402 DRYINDRFLPDKAVDLLDEAGARMRIKRMTAPKGIRDV------DDRIAEVRKEKE---- 451
Query: 554 VQGSRLKYDDV--VASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSG 606
S + D A + DT + E + D +E A + + IA V + W+G
Sbjct: 452 ---SAIDAQDFEKAAGLRDTERKLHEERSAKEKQWRSGDLEEIAEISEEQIAEVLAHWTG 508
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E++L KR+IGQ+EAV A+SRA++R+R GLKDP RP+ + +F G
Sbjct: 509 IPVLKLTEKESSRLLNMEDELHKRIIGQNEAVKAVSRAIRRTRAGLKDPRRPSGSFIFAG 568
Query: 667 PTGVGKTELAKSLAACYFGS 686
P+GVGKTEL+K+LA FGS
Sbjct: 569 PSGVGKTELSKALANFLFGS 588
>gi|297734500|emb|CBI15747.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 270/616 (43%), Positives = 376/616 (61%), Gaps = 51/616 (8%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKA 137
++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + A
Sbjct: 138 AMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDA 197
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E ++E +R G+N+I E
Sbjct: 198 RVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSE 244
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LG D +++ V R+ GE ++ +
Sbjct: 245 HLLLGLLREGEGVAARVLENLGADPSNIR-TQVIRMVGE----------------STEAV 287
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+
Sbjct: 288 GAGVGGGTTGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLI 347
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ E
Sbjct: 348 GEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 407
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 408 IKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRK 462
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EPS ++ ++IL GLRE+YE HH ++T EA+ +A LS +YI
Sbjct: 463 HIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAARLSYQYI 522
Query: 498 SDRYLPDKAIDLVDEAGSRA---HIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
SDR+LPDKAIDL+DEAGSR H +L + +E L K +E +
Sbjct: 523 SDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARE-----LEKELRQITKEKNEAVRSQDFE 577
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPD----DIAAVASLWSGIPVQ 610
+ L+ D + +++ + E +GP DI + S W+GIPV+
Sbjct: 578 KAGELR--DREMDLKAQISTLIDKGKEMTKAETEAGDIGPMVTEVDIQHIVSAWTGIPVE 635
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
+++ DE L+ +EE L +RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGV
Sbjct: 636 KVSTDESDRLLKMEETLHRRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGV 695
Query: 671 GKTELAKSLAACYFGS 686
GK+ELAK+LAA YFGS
Sbjct: 696 GKSELAKALAAYYFGS 711
>gi|226950963|ref|YP_002806054.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum A2 str. Kyoto]
gi|226843529|gb|ACO86195.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum A2 str. Kyoto]
Length = 811
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 257/612 (41%), Positives = 361/612 (58%), Gaps = 52/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+F RFTERA K ++ +Q EA+ V T+H+LLG++ ED L + IT DK R+
Sbjct: 2 MFGRFTERAQKVLMNAQEEAEKFKHGYVGTEHILLGILIEDGVAKELLNNFSITEDKVRQ 61
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ + +G+ ++P + TKR+ E ++ +R+ +N+I PEHI
Sbjct: 62 LI------------ERYEGKGEMDLYKNEIPLTPRTKRLLEMSLLEARNLNHNYITPEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A +L LG+D L V L G+ + K
Sbjct: 110 LLGLIREAEGVAFTILSNLGLDAERLRKELVKNLSGQE------------------TPKD 151
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
K ++ L+QF DLT A E +DPVIGR+ E QR+++ILCRRTKNNP L+GE
Sbjct: 152 EGSKKSSKSSTPTLDQFGRDLTEMAEEGKVDPVIGRDKETQRVLEILCRRTKNNPCLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA I+ +P L +KR+++LD+ ++AGAK RGE E R+ ++ E++
Sbjct: 212 PGVGKTAIAEGLAQNIIDGNIPEILKNKRVVTLDLTSMIAGAKYRGEFEDRLKKIMEEVR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
S D ILFIDE+HT++G+G +D +N+LKP+L RGE+QCI +TT DE+R
Sbjct: 272 SSKDTILFIDEIHTIVGAGAAE-----GAIDAANILKPALARGEIQCIGATTLDEYRKYI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EP++E+ + IL GLR+KYEAHH KFT +AI AAV+LS RYI D
Sbjct: 327 EKDSALERRFQPINVGEPTKEETIEILKGLRDKYEAHHRVKFTDDAIYAAVNLSDRYIRD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEAGS+ I+ L PPD E + + + E R+
Sbjct: 387 RFLPDKAIDLMDEAGSKVRIQ-----------NLIAPPDLKNIEEQLDKVVKEKEDAIRV 435
Query: 560 KYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ + A++ D + + E D + +V IAAV S W+ IPV ++T
Sbjct: 436 QDFEKAANLRDKEKELKEKLEGLKKDWNAEKEGSNLIVSEQQIAAVVSNWTNIPVNKLTE 495
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ LE L RVIGQ+EA+ ++SR+V+R+RVGLKDP RP + +F GPTGVGKTE
Sbjct: 496 KESERLLKLENILHNRVIGQEEAIKSVSRSVRRARVGLKDPKRPIGSFIFLGPTGVGKTE 555
Query: 675 LAKSLAACYFGS 686
L K+LA FG+
Sbjct: 556 LTKALAEAMFGN 567
>gi|168181833|ref|ZP_02616497.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum Bf]
gi|237796972|ref|YP_002864524.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum Ba4 str. 657]
gi|182674884|gb|EDT86845.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum Bf]
gi|229263581|gb|ACQ54614.1| putative negative regulator of genetic competence MecB/ClpC
[Clostridium botulinum Ba4 str. 657]
Length = 811
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/612 (41%), Positives = 362/612 (59%), Gaps = 52/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+F RFTERA K ++ +Q EA+ V T+H+LLG++ ED L + IT DK R+
Sbjct: 2 MFGRFTERAQKVLMNAQEEAEKFKHGYVGTEHILLGILIEDGVAKELLNNFSITEDKVRQ 61
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ + +G+ ++P + TKR+ E ++ +R+ +N+I PEHI
Sbjct: 62 LI------------ERYEGKGEMDLYKNEIPLTPRTKRLLEMSLLEARNLNHNYITPEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A +L LG+D L + L G+ + K
Sbjct: 110 LLGLIREAEGVAFTILSNLGLDAERLRKELIKNLSGQE------------------TPKD 151
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
K ++ L+QF DLT A E +DPVIGR+ E QR+++ILCRRTKNNP L+GE
Sbjct: 152 EGSKKSSKSSTPTLDQFGRDLTEMAEEGKVDPVIGRDKETQRVLEILCRRTKNNPCLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA I+ +P L +KR+++LD+ ++AGAK RGE E R+ ++ E++
Sbjct: 212 PGVGKTAIAEGLAQNIINGNIPEILKNKRVVTLDLTSMIAGAKYRGEFEDRLKKIMEEVR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
S D ILFIDE+HT++G+G +D +N+LKP+L RGE+QCI +TT DE+R
Sbjct: 272 SSKDTILFIDEIHTIVGAGAAE-----GAIDAANILKPALARGEIQCIGATTLDEYRKYI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EP++E+ + IL GLR+KYEAHH KFT +AI AAV+LS RYI D
Sbjct: 327 EKDSALERRFQPINVGEPTKEETIEILKGLRDKYEAHHRVKFTDDAIYAAVNLSDRYIRD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEAGS+ I+ L PPD E + + + E R+
Sbjct: 387 RFLPDKAIDLMDEAGSKVRIQ-----------NLIAPPDLKNIEEQLDKVVKEKEDAIRV 435
Query: 560 KYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ + A++ D + + E D + +V IAAV S W+ IPV ++T
Sbjct: 436 QDFEKAANLRDKEKELKEKLEGLKKDWNAEKEGSNLIVSEQQIAAVVSNWTNIPVNKLTE 495
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ LE+ L RVIGQ+EA+ ++SR+V+R+RVGLKDP RP + +F GPTGVGKTE
Sbjct: 496 KESERLLKLEDILHNRVIGQEEAIKSVSRSVRRARVGLKDPKRPIGSFIFLGPTGVGKTE 555
Query: 675 LAKSLAACYFGS 686
L K+LA FG+
Sbjct: 556 LTKALAEAMFGN 567
>gi|188584788|ref|YP_001916333.1| ATPase AAA [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179349475|gb|ACB83745.1| ATPase AAA-2 domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 814
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/614 (41%), Positives = 364/614 (59%), Gaps = 49/614 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFT+RA K + SQ EAK L + + T+HLLLGLI E F G+ +++ R
Sbjct: 1 MFARFTQRAQKVMALSQDEAKRLNHNYIGTEHLLLGLIREGEGIAAQTFKNLGVDLEEVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
EAV ++ Q + + ++ K V E ++E +R G+N+I EH
Sbjct: 61 EAVENLVQPGEEQ-------------VSGNVGYTPRVKTVIELSMEEARRMGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL+ LGVD++ + + G +G+ + G+
Sbjct: 108 LLLGLVKEGEGIAAKVLQELGVDLDKAREEVLKIIGGSQQPKGQ-----------ANFGQ 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
K R + L+ F DLT A E +DPVIGR+ EI+R+IQ+L RRTKNNP L+G
Sbjct: 157 AQNPKMANRDKTPTLDNFGRDLTKLAEEGKLDPVIGRKKEIERVIQVLSRRTKNNPCLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I++ EVP L +KR+++L++ ++AG K RGE E R+ LI E+
Sbjct: 217 EPGVGKTAIAEGLAQKIIEGEVPKILENKRVVTLELSAVVAGTKYRGEFEERLRKLIDEL 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
SG+VI+FIDE+HT+IG+G +D SN+LKP+L +GELQCI +TT DE+R
Sbjct: 277 TDSGEVIIFIDEIHTMIGAGAA-----EGAIDASNILKPALAKGELQCIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS+E V IL GLR++YEAHH + T +AI A+V +S RYI+
Sbjct: 332 IEKDSALERRFQPVTVDEPSKEATVEILKGLRDRYEAHHRVQITDDAIEASVKMSDRYIT 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEA S ++ + PPD E + E +
Sbjct: 392 DRYLPDKAIDLIDEAASNVKLKTN-----------TAPPDMRKLEEDLEEIEKEKEAAVK 440
Query: 559 LKYDDVVASMGDTSEIV------VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + A + D + + +E S DE A V +DIA + S W+GIPV+++
Sbjct: 441 SQDFEQAAKLRDKEQEIKKELEDMEKSWEKKQLSDE-AQVTEEDIARIVSDWTGIPVKRL 499
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +E+ L +RV+GQ+EAV ++S A++R+R GLKDP RP + +F GPTGVGK
Sbjct: 500 AQEETERLLNMEDALHQRVVGQEEAVQSVSNAIRRARSGLKDPKRPIGSFIFLGPTGVGK 559
Query: 673 TELAKSLAACYFGS 686
TELA++LA FG
Sbjct: 560 TELARALADVLFGD 573
>gi|251799676|ref|YP_003014407.1| ATPase AAA [Paenibacillus sp. JDR-2]
gi|247547302|gb|ACT04321.1| ATPase AAA-2 domain protein [Paenibacillus sp. JDR-2]
Length = 817
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/612 (42%), Positives = 368/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALIGLGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q T+ + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVEALIGRGQEQPTN--------------IAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLG------------------SSEAV 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+++ SP L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 149 SSSHGSPSNVSTPTLDGLARDLTAYAREGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQKIIANEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+A++IL GLR++YEAHH K T +AI AV LS RYI+
Sbjct: 324 IEKDAALERRFQPITVDQPSPEEAIQILHGLRDRYEAHHRVKITDDAIVQAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + + + PP+ E R E +
Sbjct: 384 DRFLPDKAIDLIDEASSKVRLNSY-----------TVPPNLKQLENRLEDIRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ DT + + E + + E + V P+DIA V + W+GIPV ++
Sbjct: 433 SQEFEKAAALRDTEQKIREELDVTKNQWKEKQGRTDSEVTPEDIAQVVASWTGIPVSKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E+ L RVIGQ++AV A+SRA++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETERLLKMEDILHDRVIGQEDAVKAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|433447284|ref|ZP_20410881.1| Class III stress response-related ATPase, ClpC subunit
[Anoxybacillus flavithermus TNO-09.006]
gi|431999948|gb|ELK20855.1| Class III stress response-related ATPase, ClpC subunit
[Anoxybacillus flavithermus TNO-09.006]
Length = 810
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 267/616 (43%), Positives = 368/616 (59%), Gaps = 64/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALMALGLGPDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI--------------GRGNEVGQTIHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G S +
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG--------------------SSE 146
Query: 259 TAALKSPGRTRASA--LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
+A+ G T A+ L+ DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L
Sbjct: 147 SASGHHGGATHANTPTLDSLARDLTAIAREGGLDPVIGRSKEIQRVIEVLSRRTKNNPVL 206
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++
Sbjct: 207 IGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMD 266
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 267 EIRQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPSLARGELQCIGATTLDEYR 321
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH + EAI AV LS RY
Sbjct: 322 KYIEKDAALERRFQPIHVGEPTVEESIQILKGLRDRYEAHHRVSISDEAIEQAVKLSDRY 381
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQA 549
ISDR+LPDKAIDL+DEA S+ + F ++ EQ+ + K D QE +
Sbjct: 382 ISDRFLPDKAIDLIDEACSKVRLRSFTTPPNLKELEQKLEEIRKEKDAAVQSQEFEKAAS 441
Query: 550 MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ + Q R + ++ + + E + V +DIAAV S W+GIPV
Sbjct: 442 LRDAEQKLREQLEETKRAWKEKQ-------------GQENSEVTVEDIAAVVSSWTGIPV 488
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++ E L+ LEE L RVIGQ+EAV A+++AV+R+R GLKDP RP + +F GPTG
Sbjct: 489 SKLAQTETERLLKLEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTG 548
Query: 670 VGKTELAKSLAACYFG 685
VGKTELA++LA FG
Sbjct: 549 VGKTELARALAEAMFG 564
>gi|386712438|ref|YP_006178760.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Halobacillus
halophilus DSM 2266]
gi|384071993|emb|CCG43483.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Halobacillus
halophilus DSM 2266]
Length = 819
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 264/614 (42%), Positives = 375/614 (61%), Gaps = 53/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL++E G +T
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLVSE---GEGIAAKSLT------- 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + S Q+ + +G+ S + ++ K+V E +++ +R G++++ EHI
Sbjct: 52 ALGLEASKIQQEVEKLIGKGEKVSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G E + + R G+ A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG-----NNESTGGQNRRGGGSGGQAA 163
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ +P L+ DLT A E IDPVIGR EI+R+IQ+L RRTKNNP+L+GE
Sbjct: 164 SANTP------TLDSLARDLTTIAKEGNIDPVIGRGKEIERVIQVLSRRTKNNPVLVGEP 217
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 218 GVGKTAIAEGLAQQIINNEIPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMEEIRQ 277
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 278 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTIDEYRKYIE 332
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ +++V+IL GLR++YEAHH ++I +AV S RYI+DR
Sbjct: 333 KDAALERRFQPIQVDEPTLDESVQILQGLRDRYEAHHRVTIPDDSIESAVRFSDRYITDR 392
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQGS 557
+LPDKAIDL+DEA S+ + + + PP+ + Q++ V+ + VQ
Sbjct: 393 FLPDKAIDLIDEAASKVRLRSY-----------TAPPNLKELEQKLEEVRKEKDAAVQSQ 441
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPVQQ 611
+ AS+ D SE + L D+ E + V +DIA+V S W+G+PV +
Sbjct: 442 EFEK---AASLRD-SEQRLRDELEETKDEWKEKQGQEDSEVTVEDIASVVSTWTGVPVSK 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T DE L+ LE+ L RVIGQDEAV +IS+A++R+R GLKDP RP + +F GPTGVG
Sbjct: 498 MTKDESERLLQLEDTLHNRVIGQDEAVKSISKAIRRARAGLKDPKRPIGSFIFLGPTGVG 557
Query: 672 KTELAKSLAACYFG 685
KTELA++LA FG
Sbjct: 558 KTELARALAESMFG 571
>gi|302876561|ref|YP_003845194.1| ATPase AAA-2 domain-containing protein [Clostridium cellulovorans
743B]
gi|307687233|ref|ZP_07629679.1| ATPase AAA-2 domain-containing protein [Clostridium cellulovorans
743B]
gi|302579418|gb|ADL53430.1| ATPase AAA-2 domain protein [Clostridium cellulovorans 743B]
Length = 812
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 266/613 (43%), Positives = 378/613 (61%), Gaps = 56/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAED--RHPNGFLESGITIDKAR 138
+F RFTERA K + F+Q EA++L + T+H+LLG++ E+ E +T++K R
Sbjct: 2 MFGRFTERAQKIIYFAQEEAQNLQHGYIGTEHILLGILKEEGGLSKQALNEMNVTLEKVR 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E + ++ +G + ++P + TKR+ + + +R+ +N+++PEH
Sbjct: 62 ELI------------EEYEGKGDAEVAKNEIPLTPRTKRLLDLSFSEARALSHNYVSPEH 109
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L L +G A +L LGVD L V L G+ ++G +++N K
Sbjct: 110 ILLALIKEGEGVAFTILNNLGVDFKRLRDNIVDSLSGK-QQQG-------DIKDN----K 157
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T ++ +P L+QF DLT A E +DPVIGR+ E +R+++IL RRTKNNP L+G
Sbjct: 158 THSMPTP------TLDQFGRDLTKMAKEAKLDPVIGRDKETERVLEILSRRTKNNPCLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ +P L KR+++LD+ L+AG+K RGE E R+ +++EI
Sbjct: 212 EPGVGKTAIAEGLAQKIVEGNIPEILKDKRVVTLDLSSLIAGSKYRGEFEERLKKVMAEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
K+G+V+LFIDE+HT++G+G G +G +D SN+LKPSL RGE+QCI +TT DE+R
Sbjct: 272 TKAGNVLLFIDEIHTIVGAG----GAEG-AIDASNILKPSLARGEIQCIGATTLDEYRKY 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP++E+A+ IL GLR+KYEAHH K T AI+AAV+LS RYI+
Sbjct: 327 IEKDSALERRFQPVKVGEPTKEEALLILKGLRDKYEAHHRVKITDAAIDAAVNLSDRYIT 386
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAG+R I+ L+ PPD E + E
Sbjct: 387 DRYLPDKAIDLIDEAGARVRIQ-----------NLTAPPDLKSLEEELEKISKEKADAIG 435
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDD-------DEPAVVGPDDIAAVASLWSGIPVQQ 611
++ + A + DT E + L S D E VG ++IA V S W+ +PV++
Sbjct: 436 VQDFEKAARLRDT-EKETKERLEKLSKDWKNNNSRTENQEVGEEEIATVVSKWTNVPVEK 494
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L+ LEE L RVIGQ+EAV +++RAV+R+RVGLKDP RP + +F GPTGVG
Sbjct: 495 LTEKESERLLKLEEILHNRVIGQEEAVISVARAVRRARVGLKDPKRPIGSFIFLGPTGVG 554
Query: 672 KTELAKSLAACYF 684
KTEL K+LA F
Sbjct: 555 KTELTKALAEAMF 567
>gi|168178801|ref|ZP_02613465.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum NCTC 2916]
gi|182670016|gb|EDT81992.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum NCTC 2916]
Length = 811
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/612 (41%), Positives = 361/612 (58%), Gaps = 52/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+F RFTERA K ++ +Q EA+ V T+H+LLG++ ED L + IT DK R+
Sbjct: 2 MFGRFTERAQKVLMNAQEEAEKFKHGYVGTEHILLGILIEDGVAKELLNNFSITEDKVRQ 61
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ + +G+ ++P + TKR+ E ++ +R+ +N+I PEHI
Sbjct: 62 LI------------ERYEGKGEMDLYKNEIPLTPRTKRLLEMSLLEARNLNHNYITPEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A +L LG+D L + L G+ + K
Sbjct: 110 LLGLIREAEGVAFTILSNLGLDAERLRKELIKNLSGQE------------------TPKD 151
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
K ++ L+QF DLT A E +DPVIGR+ E QR+++ILCRRTKNNP L+GE
Sbjct: 152 EGSKKSSKSSTPTLDQFGRDLTEMAEEGKVDPVIGRDKETQRVLEILCRRTKNNPCLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA I+ +P L +KR+++LD+ ++AGAK RGE E R+ ++ E++
Sbjct: 212 PGVGKTAIAEGLAQNIIDGNIPEILKNKRVVTLDLTSMIAGAKYRGEFEDRLKKIMEEVR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
S D ILFIDE+HT++G+G +D +N+LKP+L RGE+QCI +TT DE+R
Sbjct: 272 SSKDTILFIDEIHTIVGAGAAE-----GAIDAANILKPALARGEIQCIGATTLDEYRKYI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EP++E+ + IL GLR+KYEAHH KFT +AI AAV+LS RYI D
Sbjct: 327 EKDSALERRFQPINVGEPTKEETIEILKGLRDKYEAHHRVKFTDDAIYAAVNLSDRYIRD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEAGS+ I+ L PPD E + + + E R+
Sbjct: 387 RFLPDKAIDLMDEAGSKVRIQ-----------NLIAPPDLKNIEEQLDKVVKEKEDAIRV 435
Query: 560 KYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ + A++ D + + E D + +V IAAV S W+ IPV ++T
Sbjct: 436 QDFEKAANLRDKEKELKEKLEGLKKDWNAEKEGSNLIVSEQQIAAVVSNWTNIPVNKLTE 495
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ LE L RVIGQ+EA+ ++SR+V+R+RVGLKDP RP + +F GPTGVGKTE
Sbjct: 496 KESERLLKLENILHNRVIGQEEAIKSVSRSVRRARVGLKDPKRPIGSFIFLGPTGVGKTE 555
Query: 675 LAKSLAACYFGS 686
L K+LA FG+
Sbjct: 556 LTKALAEAMFGN 567
>gi|153940994|ref|YP_001392864.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum F str. Langeland]
gi|384463825|ref|YP_005676420.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum F str. 230613]
gi|152936890|gb|ABS42388.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum F str. Langeland]
gi|295320842|gb|ADG01220.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum F str. 230613]
Length = 811
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/612 (41%), Positives = 361/612 (58%), Gaps = 52/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+F RFTERA K ++ +Q EA+ V T+H+LLG++ ED L + IT DK R+
Sbjct: 2 MFGRFTERAQKVLMNAQEEAEKFKHGYVGTEHILLGILIEDGVAKELLNNFSITEDKVRQ 61
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ + +G+ ++P + TKR+ E ++ +R+ +N+I PEHI
Sbjct: 62 LI------------ERYEGKGEMDLYKNEIPLTPRTKRLLEMSLLEARNLNHNYITPEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A +L LG+D L + L G+ + K
Sbjct: 110 LLGLIREAEGVAFTILSNLGLDAERLRKELIKNLSGQE------------------TPKD 151
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
K ++ L+QF DLT A E +DPVIGR+ E QR+++ILCRRTKNNP L+GE
Sbjct: 152 EGSKKSSKSSTPTLDQFGRDLTEMAEEGKVDPVIGRDKETQRVLEILCRRTKNNPCLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA I+ +P L +KR+++LD+ ++AGAK RGE E R+ ++ E++
Sbjct: 212 PGVGKTAIAEGLAQNIIDGNIPEILKNKRVVTLDLTSMIAGAKYRGEFEDRLKKIMEEVR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
S D ILFIDE+HT++G+G +D +N+LKP+L RGE+QCI +TT DE+R
Sbjct: 272 SSKDTILFIDEIHTIVGAGAAE-----GAIDAANILKPALARGEIQCIGATTLDEYRKYI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EP++E+ + IL GLR+KYEAHH KFT +AI AAV+LS RYI D
Sbjct: 327 EKDSALERRFQPINVGEPTKEETIEILKGLRDKYEAHHRVKFTDDAIYAAVNLSDRYIRD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEAGS+ I+ L PPD E + + + E R+
Sbjct: 387 RFLPDKAIDLMDEAGSKVRIQ-----------NLIAPPDLKNIEEQLDKVVKEKEDAIRV 435
Query: 560 KYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ + A++ D + + E D + +V IAAV S W+ IPV ++T
Sbjct: 436 QDFEKAANLRDKEKELKEKLEGLKKDWNAEKEGSNLIVSEQQIAAVVSNWTNIPVNKLTE 495
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ LE L RVIGQ+EA+ ++SR+V+R+RVGLKDP RP + +F GPTGVGKTE
Sbjct: 496 KESERLLKLENILHNRVIGQEEAIKSVSRSVRRARVGLKDPKRPIGSFIFLGPTGVGKTE 555
Query: 675 LAKSLAACYFGS 686
L K+LA FG+
Sbjct: 556 LTKALAEAMFGN 567
>gi|260578411|ref|ZP_05846325.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Corynebacterium jeikeium ATCC 43734]
gi|258603433|gb|EEW16696.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Corynebacterium jeikeium ATCC 43734]
Length = 885
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 265/615 (43%), Positives = 375/615 (60%), Gaps = 40/615 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA++L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARALNHNYIGTEHILLGLIQEGEGVAAKALESMGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I + G P S +PF+ K+V E A+ + G+ +I EH
Sbjct: 61 TEVKDIIGTG-----------GHPPSGY--IPFTPRAKKVLELALREALQLGHKYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D++ + + L G EG E A G + G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLSRVRQQVIQLLSG---YEGNEEESAGGEPATAGVGS 164
Query: 259 T--AALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ A PG+ S L+QF +LT A + +DPV+GRE EI+R++Q+L RRTKNNP+
Sbjct: 165 SPEGAPSRPGQKSNSLVLDQFGRNLTQAAKDGKLDPVVGRENEIERVMQVLSRRTKNNPV 224
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ ++
Sbjct: 225 LIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKVL 284
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI + GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+
Sbjct: 285 KEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEY 339
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS E V IL GLR++YEAHH T A+ AA L+ R
Sbjct: 340 RKHIEKDAALERRFQPVQVPEPSVELTVEILKGLRDRYEAHHRVSITDGALKAAAQLADR 399
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM----H 551
YI+DR+LPDKA+DL+DEAG+R I+ K Q DD E+R +
Sbjct: 400 YINDRFLPDKAVDLIDEAGARMRIKRMTAPKAIQDI------DDKIAEVRRKKEAAIDEQ 453
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + + L+ D+ +G+ E + A + DE A VG + IA V W+GIPV +
Sbjct: 454 DFEKAASLRDDE--RKLGE--ERAEKEKAWRAGELDEVAEVGEEQIAEVMGNWTGIPVFK 509
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E++L KR+IGQD+AV A+SRA++R+R GLKDP RP+ + +F GP+GVG
Sbjct: 510 LTEEESTRLLHMEDELHKRIIGQDDAVKAVSRAIRRTRAGLKDPKRPSGSFIFAGPSGVG 569
Query: 672 KTELAKSLAACYFGS 686
KTEL+K+LA FG
Sbjct: 570 KTELSKALAEFLFGD 584
>gi|332981035|ref|YP_004462476.1| ATPase AAA-2 domain-containing protein [Mahella australiensis 50-1
BON]
gi|332698713|gb|AEE95654.1| ATPase AAA-2 domain protein [Mahella australiensis 50-1 BON]
Length = 815
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 270/622 (43%), Positives = 378/622 (60%), Gaps = 72/622 (11%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-----GITI 134
+ F RFTE+A KA+I++Q EA++LG + V T+H+LLGL+ R +G G I
Sbjct: 2 AFFGRFTEKAQKALIYAQEEARALGHNYVGTEHMLLGLL---REEDGIAAKVLRNMGADI 58
Query: 135 DKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
+ R+ VV++ N F+ ++ TKRV E + +R+ G+N+I
Sbjct: 59 ENVRQEVVNLVGKGN-------------FNFNEGFGYTPRTKRVMELSFYEARNLGHNYI 105
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EH+ LGL +G A RVL LG+D+ + L+ +EG P KG
Sbjct: 106 GTEHLLLGLLREGEGVAARVLMDLGIDLQRARDEVIKMLK----EEGGAPQ--KG----- 154
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
P T L+QF DLT A E +DPVIGRE EI+R+IQIL RRTKNNP
Sbjct: 155 ---------QPKNTNTPNLDQFGRDLTELAREGKLDPVIGREKEIERVIQILSRRTKNNP 205
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
L+GE GVGKTAIAEGLA +I + VP L KR+++LD+ ++AG K RGE E R+ +
Sbjct: 206 CLIGEPGVGKTAIAEGLAQQIAEGNVPELLKDKRVVALDLPAMVAGTKYRGEFEERLKNV 265
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
++E++K+G++ILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE
Sbjct: 266 LNEVKKAGNIILFIDELHTVIGAGAA-----EGAIDASNILKPALARGEMQAIGATTLDE 320
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R E D AL RRFQPV++ EPS++DA+ IL GLR+KYEA+H + T EA+ AAV LS
Sbjct: 321 YRKHVEGDPALERRFQPVVVGEPSRDDALLILKGLRDKYEAYHRVRITDEALEAAVDLSM 380
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDY------WQEIRTVQ 548
RYI+DRYLPDKAIDL+DEA +R + PPDD ++IR +
Sbjct: 381 RYITDRYLPDKAIDLIDEAAARVKLRTV------------TPPDDIKELEDKLEDIRKEK 428
Query: 549 ----AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW 604
A + + ++L+ D+ + + E + ES S++ + AVV +DIA + S W
Sbjct: 429 EEAVANQDYEKAAKLRDDE--QKLKEEIEKLKESW--SSNANTTAAVVTAEDIAQIVSSW 484
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
SG+PV+Q+T E L+ LE+ L +RVIGQDEAV A+++A++R+R GLKDP RP + +F
Sbjct: 485 SGVPVKQLTEAESERLLNLEKILHERVIGQDEAVEAVAKAIRRARAGLKDPKRPIGSFIF 544
Query: 665 CGPTGVGKTELAKSLAACYFGS 686
GPTGVGKTELA++LA FG
Sbjct: 545 LGPTGVGKTELARALAEAMFGD 566
>gi|148381451|ref|YP_001255992.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum A str. ATCC 3502]
gi|153932782|ref|YP_001385826.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum A str. ATCC 19397]
gi|153936468|ref|YP_001389233.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum A str. Hall]
gi|387819793|ref|YP_005680140.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB [Clostridium
botulinum H04402 065]
gi|148290935|emb|CAL85071.1| negative regulator of genetic competence [Clostridium botulinum A
str. ATCC 3502]
gi|152928826|gb|ABS34326.1| putative negative regulator of genetic competence MecB/ClpC
[Clostridium botulinum A str. ATCC 19397]
gi|152932382|gb|ABS37881.1| putative negative regulator of genetic competence MecB/ClpC
[Clostridium botulinum A str. Hall]
gi|322807837|emb|CBZ05412.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB [Clostridium
botulinum H04402 065]
Length = 811
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/612 (41%), Positives = 361/612 (58%), Gaps = 52/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+F RFTERA K ++ +Q EA+ V T+H+LLG++ ED L + IT DK R+
Sbjct: 2 MFGRFTERAQKVLMNAQEEAEKFKHGYVGTEHILLGILIEDGVAKELLNNFSITEDKVRQ 61
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ + +G+ ++P + TKR+ E ++ +R+ +N+I PEHI
Sbjct: 62 LI------------ERYEGKGEMDLYKNEIPLTPRTKRLLEMSLLEARNLNHNYITPEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A +L LG+D L + L G+ + K
Sbjct: 110 LLGLIREAEGVAFTILSNLGLDAERLRKELIKNLSGQE------------------TPKD 151
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
K ++ L+QF DLT A E +DPVIGR+ E QR+++ILCRRTKNNP L+GE
Sbjct: 152 EGSKKSSKSSTPTLDQFGRDLTEMAEEGKVDPVIGRDKETQRVLEILCRRTKNNPCLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA I+ +P L +KR+++LD+ ++AGAK RGE E R+ ++ E++
Sbjct: 212 PGVGKTAIAEGLAQNIIDGNIPEILKNKRVVTLDLTSMIAGAKYRGEFEDRLKKIMEEVR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
S D ILFIDE+HT++G+G +D +N+LKP+L RGE+QCI +TT DE+R
Sbjct: 272 SSKDTILFIDEIHTIVGAGAAE-----GAIDAANILKPALARGEIQCIGATTLDEYRKYI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EP++E+ + IL GLR+KYEAHH KFT +AI AAV+LS RYI D
Sbjct: 327 EKDSALERRFQPINVGEPTKEETIEILKGLRDKYEAHHRVKFTDDAIYAAVNLSDRYIRD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEAGS+ I+ L PPD E + + + E R+
Sbjct: 387 RFLPDKAIDLMDEAGSKVRIQ-----------NLIAPPDLKNIEEQLDKVVKEKEDAIRV 435
Query: 560 KYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ + A++ D + + E D + +V IAAV S W+ IPV ++T
Sbjct: 436 QDFEKAANLRDKEKELKEKLEGLKKDWNAEKEGSNLIVSEQQIAAVVSNWTNIPVNKLTE 495
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ LE L RVIGQ+EA+ ++SR+V+R+RVGLKDP RP + +F GPTGVGKTE
Sbjct: 496 KESERLLKLENILHNRVIGQEEAIKSVSRSVRRARVGLKDPKRPIGSFIFLGPTGVGKTE 555
Query: 675 LAKSLAACYFGS 686
L K+LA FG+
Sbjct: 556 LTKALAEAMFGN 567
>gi|134298058|ref|YP_001111554.1| ATPase [Desulfotomaculum reducens MI-1]
gi|134050758|gb|ABO48729.1| ATPase AAA-2 domain protein [Desulfotomaculum reducens MI-1]
Length = 812
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 253/614 (41%), Positives = 363/614 (59%), Gaps = 55/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F+RFT+RA K +I +Q EA+ L + T+H+LLGLI E + I DK +
Sbjct: 1 MFQRFTQRAQKVLILAQEEARRLKYPYIGTEHILLGLIREGEGIAARALEQMNINADKVK 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I N + + ++P + K+V E AVE SRS G+N++ EH
Sbjct: 61 TTVEQIVEIGNE-------------AVSGEIPPTPRAKKVLELAVEESRSMGHNYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL LG D+ + ++ L +
Sbjct: 108 LLLGLVKEGEGVAAQVLVSLGADLGKVRQQVINMLG----------------SGGGQTPG 151
Query: 259 TAALKSP-GRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
P G + +L+QF DLT A EE +DPV+GR EI+R+IQ+L RRTKNNP+L+
Sbjct: 152 GNGQGCPAGGCKTVSLDQFSRDLTRLAKEEKLDPVVGRAKEIERVIQVLSRRTKNNPVLI 211
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI++ VP LL++R+++LD+ ++AG K RGE E R+ ++ E
Sbjct: 212 GEPGVGKTAIAEGLAQRIIEGNVPEILLNRRVVTLDLAAMVAGTKYRGEFEDRLKKIMEE 271
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++G++I+FIDE+HTLIG+G +D +N+LKP+L RGE+Q I +TT DE+R
Sbjct: 272 IRQAGNIIVFIDELHTLIGAGAA-----EGAIDAANILKPALARGEIQTIGATTLDEYRK 326
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EP+ E+ ++IL G+R+KYEAHH T EA+ AA LS RYI
Sbjct: 327 YIEKDSALERRFQPIQVDEPTVEETLQILKGIRDKYEAHHRVSITDEALEAAAKLSDRYI 386
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDL+DE+ SR I+ F + PPD +E + E
Sbjct: 387 TDRFLPDKAIDLIDESASRVRIKAF-----------TAPPDLKQKEKDLEEIRKEKESAI 435
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + A + D + ++ + + A ++ VV DIA + + W+G+PVQ+
Sbjct: 436 NNQEFEKAAELRDREQALL-TEINQARENWNQTKGGNNLVVSEQDIAHIVASWTGVPVQK 494
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
I +E L+ LEE L +RV+GQD+AV A+SRAV+R+R GLKDP RP + +F GPTGVG
Sbjct: 495 IAQEESEKLLNLEEVLHRRVVGQDDAVKAVSRAVRRARAGLKDPKRPVGSFIFLGPTGVG 554
Query: 672 KTELAKSLAACYFG 685
KTELA++LA FG
Sbjct: 555 KTELARALAESLFG 568
>gi|158319507|ref|YP_001512014.1| ATPase [Alkaliphilus oremlandii OhILAs]
gi|158139706|gb|ABW18018.1| ATPase AAA-2 domain protein [Alkaliphilus oremlandii OhILAs]
Length = 813
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/612 (42%), Positives = 365/612 (59%), Gaps = 52/612 (8%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKA 137
++F RFTERA + + SQ+ A+ LG V T+HLLLGL+ E+ G+ ++
Sbjct: 2 AMFGRFTERAQRVITLSQQIAQQLGHSYVGTEHLLLGLVREEEGIAAKALKNLGVEVEDI 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
++ +V N KP P TK+VFE +V +R+ +N++ E
Sbjct: 62 QQIIVQSIGVGN-----------KPVELLGYTP---RTKKVFELSVAEARNLNHNYVGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL + DG A ++L +LGV++ ++ RE L K + NS +
Sbjct: 108 HLLLGLISEGDGIASKILVQLGVNLQNV----------------REAVL-KLLNSNSSAS 150
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ L QF DL A E IDPVIGR EI R+IQ+L RRTKNNP L+
Sbjct: 151 NAKNYTASSDKETPTLNQFGRDLNDLAREGKIDPVIGRSKEIDRVIQVLSRRTKNNPCLI 210
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+AEGLA +IV+ VP L KR+++LD+ ++AGAK RGE E R+ ++ E
Sbjct: 211 GEPGVGKTAVAEGLAQQIVEGNVPDILKDKRVVTLDLASMVAGAKYRGEFEDRLKKVMEE 270
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ +VILFIDE+HT+IG+G +D +N+LKP+L RGE+Q I +TT +E+R
Sbjct: 271 IRSVDNVILFIDEMHTIIGAGAAE-----GAIDAANILKPALARGEMQVIGATTLNEYRK 325
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS EDA+RIL GLR+KYEAHH K T EA+ AAV LSARYI
Sbjct: 326 HIEKDAALERRFQPITVEEPSIEDAIRILEGLRDKYEAHHGVKITDEALKAAVELSARYI 385
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDL+DEA S+ I ++ PPD E R + +E +
Sbjct: 386 TDRFLPDKAIDLIDEAASKVKI-----------FTVTTPPDLRDLEERLEKLSNEKEEAI 434
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDD---EPAVVGPDDIAAVASLWSGIPVQQITA 614
++ + A + D + E+ +D + + A+V ++IA + S W+G+PV+++
Sbjct: 435 SVQDFERAAKLRDEEKQTKEALAERKNDVNKRHKDAIVSSEEIANIVSDWTGVPVRRLQQ 494
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ +EE L RVIGQ+EAV +I+RA++R+RVGLKDP RP + +F GPTGVGKTE
Sbjct: 495 GESEKLLNMEEILHNRVIGQEEAVKSIARAIRRARVGLKDPKRPIGSFIFLGPTGVGKTE 554
Query: 675 LAKSLAACYFGS 686
L+K+LA FG+
Sbjct: 555 LSKALAESMFGN 566
>gi|212637926|ref|YP_002314446.1| Class III stress response-related ATPase, ClpC [Anoxybacillus
flavithermus WK1]
gi|212559406|gb|ACJ32461.1| Class III stress response-related ATPase, ClpC [Anoxybacillus
flavithermus WK1]
Length = 813
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 267/616 (43%), Positives = 368/616 (59%), Gaps = 64/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ DK +
Sbjct: 5 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALMALGLGPDKIQ 64
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ + ++ K+V E +++ +R G++++ EH
Sbjct: 65 KEVESLI--------------GRGNEVGQTIHYTPRAKKVIELSMDEARKLGHSYVGTEH 110
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G S +
Sbjct: 111 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG--------------------SNE 149
Query: 259 TAALKSPGRTRASA--LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
+A+ G T A+ L+ DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L
Sbjct: 150 SASGHHGGTTHANTPTLDSLARDLTAIAREGGLDPVIGRSKEIQRVIEVLSRRTKNNPVL 209
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++
Sbjct: 210 IGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMD 269
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 270 EIRQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPSLARGELQCIGATTLDEYR 324
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH + EAI AV LS RY
Sbjct: 325 KYIEKDAALERRFQPIHVGEPTVEESIQILKGLRDRYEAHHRVSISDEAIEQAVKLSDRY 384
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQA 549
ISDR+LPDKAIDL+DEA S+ + F ++ EQ+ + K D QE +
Sbjct: 385 ISDRFLPDKAIDLIDEACSKVRLRSFTTPPNLKELEQKLEEIRKEKDAAVQSQEFEKAAS 444
Query: 550 MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ + Q R + ++ + + E + V +DIAAV S W+GIPV
Sbjct: 445 LRDAEQKLREQLEETKRAWKEKQ-------------GQENSEVTVEDIAAVVSSWTGIPV 491
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++ E L+ LEE L RVIGQ+EAV A+++AV+R+R GLKDP RP + +F GPTG
Sbjct: 492 SKLAQTETERLLKLEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTG 551
Query: 670 VGKTELAKSLAACYFG 685
VGKTELA++LA FG
Sbjct: 552 VGKTELARALAEAMFG 567
>gi|403382836|ref|ZP_10924893.1| protein ClpC [Paenibacillus sp. JC66]
Length = 807
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/610 (43%), Positives = 367/610 (60%), Gaps = 52/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGLI E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ + A G+ A ++ K+V E +++ +R G+ ++ EHI
Sbjct: 50 LIALGLGLEKIQDEVEALIGRGQEQPANFAYTPRAKKVIELSMDEARKLGHTYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L L +S G T
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQL------------LGSNEVVSSNHGSTN 156
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ +P L+ DLTA A E +DPVIGR EI+R+IQ+L RRTKNNP+L+GE
Sbjct: 157 NVNTP------TLDSLARDLTAIAKEGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQKIINNEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + +PS E+A++IL GLR++YEAHH K +I AV LS RYI+DR
Sbjct: 326 KDAALERRFQPITVDQPSPEEAIQILHGLRDRYEAHHRVKIPDVSIETAVKLSDRYITDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGS+ + + + PP+ E R E + +
Sbjct: 386 FLPDKAIDLIDEAGSKVRLRSY-----------TVPPNLKELESRLENIRKEKDSAVQSQ 434
Query: 561 YDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ DT + + E + ++ E + V P+DIA V + W+GIPV ++ +
Sbjct: 435 EFEKAASLRDTEQKLREELEVTKNEWKEKQGRTDSEVTPEDIAQVVASWTGIPVIKLKEE 494
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +E+ L RVIGQ EAV A+S+A++R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 495 ETERLLKMEDILHSRVIGQSEAVKAVSQAIRRARAGLKDPKRPMGSFIFLGPTGVGKTEL 554
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 555 ARALAESMFG 564
>gi|427418168|ref|ZP_18908351.1| ATPase with chaperone activity, ATP-binding subunit [Leptolyngbya
sp. PCC 7375]
gi|425760881|gb|EKV01734.1| ATPase with chaperone activity, ATP-binding subunit [Leptolyngbya
sp. PCC 7375]
Length = 817
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/616 (41%), Positives = 389/616 (63%), Gaps = 63/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFL-ESGITIDKAR 138
+FE F ++A+ A++ +Q++A L + V T+ +L+G++A+ D + + E+GIT+ +
Sbjct: 1 MFELFNDKAISAIMIAQQQASRLRQHYVGTELILVGVMAQGDSLVSPIVREAGITLQVLQ 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
EAV + S + Q +A++PF+ S K++ E +++ ++ +++ PEH
Sbjct: 61 EAVEATLKSDSKQ-------------PSAEIPFTPSAKQLLEQSLKEAQQLDQSYVGPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ L + + D SA ++L LGVD+ L +A+ R GE R P G G+
Sbjct: 108 LLLAVTSSDKSSAAKILTTLGVDLVKLR-IAIIRAVGE-----RLPVPTTG-------GQ 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A R ALE+F DLT A+E IDPV+GR EI+R++QIL RR+KNNP+L+G
Sbjct: 155 DAR-----GFRGKALEEFATDLTKLAAEGNIDPVVGRRQEIERVVQILGRRSKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI+ +VP LL +R++SLD+ L+AG + RGE E R+ +++E+
Sbjct: 210 EPGVGKTAIAEGLAQRIINQDVPELLLDQRVLSLDINSLVAGTRFRGEFEERLKQIVAEV 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
K+G++IL IDE+HTL+G+G G +G G+D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 270 NKAGNIILLIDEIHTLVGAG----GMEG-GMDAANMLKPALARGELQCIGATTLDEYRKY 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV+++EPS E+ + IL G+R YE HHN + +A+ A LS RYI+
Sbjct: 325 IEKDGALERRFQPVMVNEPSVEETIEILQGVRASYEQHHNLLISDDALVTAAKLSNRYIA 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS- 557
DRYLPDKAIDL+DEAGS H+ + QT + +E++ Q++ +++Q
Sbjct: 385 DRYLPDKAIDLIDEAGSCVHL------RHSQTSL--------AKELK--QSLRKIIQDKD 428
Query: 558 ---RLKYDDVVASMGDTSEIVVESSLPSASDD----DEPAVVGPDDIAAVASLWSGIPVQ 610
+ + D + + D E+ +E+ L ++D D VV +DIA V + W+G+P
Sbjct: 429 AAVKAQEFDRASELRD-QELELEAKLQDFNEDRAATDTRPVVTVEDIAQVVASWTGVPAN 487
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
+IT E +L+ LEE L +R+IGQ+ AV A+++A++R+RVGL+ RP A+ +FCGPTGV
Sbjct: 488 RITKSESAMLMKLEETLHQRIIGQENAVNAVAKAIRRARVGLRSEQRPIASFIFCGPTGV 547
Query: 671 GKTELAKSLAACYFGS 686
GKTEL K+LA FG+
Sbjct: 548 GKTELTKALADIVFGA 563
>gi|416386179|ref|ZP_11684917.1| ATP-dependent Clp protease regulatory subunit [Crocosphaera
watsonii WH 0003]
gi|357264720|gb|EHJ13568.1| ATP-dependent Clp protease regulatory subunit [Crocosphaera
watsonii WH 0003]
Length = 789
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 249/609 (40%), Positives = 371/609 (60%), Gaps = 79/609 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FE FT++A+KA++ +Q EA+ +G+++V T+HLLLGL+++ + L+S G+ + R
Sbjct: 1 MFENFTDKAIKAIMLAQEEAQRMGQNLVGTEHLLLGLLSQGNSLSARVLQSMGLNLTSTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + + +G FS + +PF+ + K+ E + E + S+ +F+ PE+
Sbjct: 61 QTIERLR------------GKGAGFS-PSNLPFTPTVKQTLEKSFEIA-SKDNSFVTPEY 106
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I + L + + A +VL G+D+ L V +L E EP ++
Sbjct: 107 ILMVLLSDANTVAVKVLISQGIDIQELRTTLVKKLGEE------EPV--------PVTAG 152
Query: 259 TAALKSPGRTRASA-LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ SP +++ A LEQF +L +A + IDPV+GR EI+R+IQIL RR+KNN +L+
Sbjct: 153 EKSAPSPSFSQSKATLEQFATNLNQKARDGQIDPVVGRSQEIERVIQILGRRSKNNAVLV 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RIV+ ++P L K++ +LDMGLL+AG + RG+ E R+ +++ +
Sbjct: 213 GEPGVGKTAIAEGLAQRIVEGDIPEILQDKQVFALDMGLLVAGTRFRGDFEERLKSIVKQ 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+++SG++IL IDE+HTL+G+GT+G G +D NLLKP+L RGELQC+ +TT DE+R
Sbjct: 273 VKESGNIILVIDEIHTLVGAGTMG----GV-MDAGNLLKPALARGELQCLGTTTLDEYRQ 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV++ EPS E+ + IL GL ++YEAHH KF+ +A+ AA +L RYI
Sbjct: 328 HIEKDAALERRFQPVMVGEPSVEETIEILQGLCKEYEAHHQVKFSPKALEAAANLGDRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
SDR+LPDKAIDL+DEAGSR H+ + K Q +
Sbjct: 388 SDRFLPDKAIDLIDEAGSRIHLRHSLQTKMQPS--------------------------- 420
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADER 617
E+ P + D VV +DIA + + W+G+PV Q+T E
Sbjct: 421 ----------------FEAENEAPVINPDSLIPVVDEEDIAEIVTAWTGVPVNQLTETES 464
Query: 618 MLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAK 677
L+ LE+ L K++IGQD AV A+SRA++R+R+GL++P RP A+ +F GPTGVGKTEL K
Sbjct: 465 ESLMYLEDNLHKKIIGQDAAVEAVSRAIRRARIGLQNPKRPIASFIFAGPTGVGKTELTK 524
Query: 678 SLAACYFGS 686
+LA FGS
Sbjct: 525 ALAEFLFGS 533
>gi|23097548|ref|NP_691014.1| ATP-dependent Clp protease [Oceanobacillus iheyensis HTE831]
gi|54035854|sp|Q8EU05.1|CLPB_OCEIH RecName: Full=Chaperone protein ClpB
gi|22775771|dbj|BAC12049.1| ATP-dependent Clp protease (ATP-binding subunit) [Oceanobacillus
iheyensis HTE831]
Length = 809
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 260/611 (42%), Positives = 362/611 (59%), Gaps = 53/611 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + SQ EA LG + + T+H+LLGL+ E G+ + K +
Sbjct: 2 MFGRFTERAQKVLALSQEEAVRLGHNNIGTEHILLGLVREGEGIAAKALQSLGLEVSKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V + +P S P K+V E + + +R G++++ EH
Sbjct: 62 EEVEKLI-----------GVGKQPTQSIHYTP---RAKKVVELSQDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N + L ++ GR+ SG+
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESQAGRQGR----------SGQ 157
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P L+ DLT A E IDPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 158 QSNASTP------TLDSLARDLTVSAKEGKIDPVIGRSKEIERVIQVLSRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAVAEGLAQQIIDNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 272 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E+ ++IL GLR++YEAHH T EAI AA LS RYI+
Sbjct: 327 IEKDAALERRFQPIQVDEPTLEETIQILNGLRDRYEAHHRVTITDEAIEAAASLSDRYIT 386
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ E + + E +
Sbjct: 387 DRFLPDKAIDLIDEAGSKVRLRSY-----------TVPPNLKELEQKLDEVRKEKDAAVQ 435
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D+ + E + + E + V +DIAAV S W+G+PV ++T
Sbjct: 436 SQEFEKAASLRDSEQRFREELETTKNQWKEKQGQTDSEVTMEDIAAVVSTWTGVPVSKLT 495
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
DE L+ +E+ L RVIGQ EAV A+++A++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 496 KDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKT 555
Query: 674 ELAKSLAACYF 684
ELA++LA F
Sbjct: 556 ELARALAEVMF 566
>gi|218186618|gb|EEC69045.1| hypothetical protein OsI_37876 [Oryza sativa Indica Group]
Length = 1412
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 267/613 (43%), Positives = 381/613 (62%), Gaps = 45/613 (7%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKA 137
S+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + A
Sbjct: 580 SMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDA 639
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E ++E +R G+N+I E
Sbjct: 640 RVEVEKI------------IGRGNGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSE 686
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LG D +++ V R+ GE + +
Sbjct: 687 HLLLGLLREGEGVAARVLESLGADPSNIR-TQVIRMIGETTE----------------AV 729
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+
Sbjct: 730 GAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 789
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ E
Sbjct: 790 GEPGVGKTAIAEGLAQRISTGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 849
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 850 IKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRK 904
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EP+ ++ + IL GLRE+YE HH ++T +A+ +A LS +YI
Sbjct: 905 HIEKDPALERRFQPVRVPEPTVDETIEILRGLRERYEIHHKLRYTDDALISAAKLSYQYI 964
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV-- 553
SDR+LPDKAIDL+DEAGSR + + +E + L + D + +R+ Q +
Sbjct: 965 SDRFLPDKAIDLIDEAGSRVRLRHAQVPEEARELDKELKQITKDKNEAVRS-QDFEKAGE 1023
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
++ ++ + ++ D S+ E S + +V DI + S W+GIPV++++
Sbjct: 1024 LRDREMELKAQITALIDKSK---EMSKAETESGETGPLVNEADIQHIVSSWTGIPVEKVS 1080
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+DE L+ +EE L +RVIGQDEAV AISR+++R+RVGLK+PNRP A+ +F GPTGVGK+
Sbjct: 1081 SDESDKLLKMEETLHQRVIGQDEAVKAISRSIRRARVGLKNPNRPIASFIFAGPTGVGKS 1140
Query: 674 ELAKSLAACYFGS 686
ELAK+LAA YFGS
Sbjct: 1141 ELAKALAAYYFGS 1153
>gi|403743591|ref|ZP_10953143.1| ATPase AAA-2 domain-containing protein [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122621|gb|EJY56826.1| ATPase AAA-2 domain-containing protein [Alicyclobacillus hesperidum
URH17-3-68]
Length = 810
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/617 (42%), Positives = 366/617 (59%), Gaps = 65/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
++ RFTERA + + +Q EA L V T+H+LLGL+ E G+ DK +
Sbjct: 1 MYARFTERAQRVLALAQEEATRLSHPGVGTEHILLGLVREGEGIAARALQMLGVQADKVQ 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I GK + M ++ K+V E +++ +R ++++ EH
Sbjct: 61 QEVERII--------------GKGQGQVSAMTYTPRAKKVIELSIDEARKLNHSYVGTEH 106
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL + V +N + L G+ LA G +++S+
Sbjct: 107 ILLGLIREGEGVAARVLANMNVSLNKARQQVLQLLGGDAV------DLA-GDKDSSVGTP 159
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T L+ DLT A + +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 160 T-------------LDSLARDLTQMARDGKLDPVIGRANEIERVIQVLSRRTKNNPVLIG 206
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV ++P L +KR+M LDMG ++AG K RGE E R+ ++ EI
Sbjct: 207 EPGVGKTAIAEGLAQRIVAGDIPETLRNKRVMVLDMGTVVAGTKYRGEFEDRLKKIMDEI 266
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 267 RQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKH 321
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E+A+ IL GLR++YEAHH K T EA+ AAV +S RYIS
Sbjct: 322 IEKDAALERRFQPITVDQPSPEEALEILRGLRDRYEAHHRVKITDEALEAAVRMSDRYIS 381
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQA------- 549
DR+LPDKAIDL+DEAGSR + + PP+ + Q++ V++
Sbjct: 382 DRFLPDKAIDLIDEAGSRVRLRTH-----------TAPPNLKELEQKLEKVRSEKDAAVQ 430
Query: 550 MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
E Q + L+ D + E + E + DD V DDIA V + W+GIPV
Sbjct: 431 SQEFEQAASLR--DQEQKIKQELEQLKERWQQTQQHDD--VRVTADDIAHVVAAWTGIPV 486
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+Q+ +E L+ +E+ L +RVIGQDEAV A+SRA++R+R GLKDP RP + +F GPTG
Sbjct: 487 KQLAQEESERLLHMEQLLHERVIGQDEAVQAVSRAIRRARAGLKDPKRPIGSFIFLGPTG 546
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELA++LA FG
Sbjct: 547 VGKTELARALAESMFGD 563
>gi|402299365|ref|ZP_10818976.1| class III stress response-related ATPase [Bacillus alcalophilus
ATCC 27647]
gi|401725403|gb|EJS98688.1| class III stress response-related ATPase [Bacillus alcalophilus
ATCC 27647]
Length = 813
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 264/615 (42%), Positives = 373/615 (60%), Gaps = 60/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGLI E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLIREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ + + GK + + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LQALGLGSEKIQKEVETLIGKGQEGSKTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG--ELAKEGREPSLAKGVRENSISGK 258
LGL +G A RVL LGV +N A V +L G E+ ++ SG
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGSNEVGSSSQQ------------SGA 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T+ +P L+ DLTA A EE +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 157 TSHASTP------TLDSLARDLTAIAREEALDPVIGRSKEIERVIQVLSRRTKNNPVLIG 210
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA I+ EVP L +KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 211 EPGVGKTAIAEGLAQSIIANEVPETLRNKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 270
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 271 RQAGNVILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 325
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EP+ E++++IL GLR++YEAHH T +AI+ AV LS RYI+
Sbjct: 326 IEKDAALERRFQPIQVNEPTLEESIQILTGLRDRYEAHHRVTITDDAISEAVKLSDRYIT 385
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + + + PP+ E R + E +
Sbjct: 386 DRFLPDKAIDLIDEAASKVRLRSY-----------TAPPNLKELEQRLEETRKEKDAAVQ 434
Query: 559 LKYDDVVASMGDT--------SEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ + AS+ D+ E+ E ++ E V DDIA V + W+G+PV
Sbjct: 435 SQEFEKAASLRDSEQRLREEVDEMKNEWKKKQGQENTEVVV---DDIAQVVASWTGVPVS 491
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++ +E L+ +EE L RV+GQ+EAV +IS+AV+R+R GLKDP RP + +F GPTGV
Sbjct: 492 KLAEEETERLLRMEEILHGRVVGQEEAVVSISKAVRRARAGLKDPKRPIGSFIFLGPTGV 551
Query: 671 GKTELAKSLAACYFG 685
GKTELA+++A FG
Sbjct: 552 GKTELARAVAETLFG 566
>gi|340356808|ref|ZP_08679449.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Sporosarcina
newyorkensis 2681]
gi|339620146|gb|EGQ24717.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Sporosarcina
newyorkensis 2681]
Length = 817
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 269/610 (44%), Positives = 367/610 (60%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFT+RA K + +Q EA L + + T+H+LLGLI E G KA +A
Sbjct: 4 MFNRFTQRAQKVLQLAQEEAIRLKHESIGTEHILLGLIRE---------GGGIAAKALDA 54
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ S+ T ++ + G + ++ KRV E +V+ SR G+++I EHI
Sbjct: 55 I-SVNADTIEREVEALVGVGSK-DVGPIVHYTPRAKRVIELSVDESRKLGHSYIGTEHIL 112
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L L +G A RVL GV +N A V +L G E S+ G N+ S T
Sbjct: 113 LALIREGEGVAARVLNNAGVSLNK-ARQQVLQLLG-----NDESSV--GSTSNNASAATP 164
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L S R DLT A E +DPVIGR EI R+I++L RRTKNNP+L+GE
Sbjct: 165 TLDSLAR-----------DLTEIAREGTLDPVIGRSKEITRVIEVLARRTKNNPVLIGEP 213
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA ++V EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 214 GVGKTAIAEGLAQQVVNNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRMKKVMEEIRQ 273
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 274 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 328
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E+ ++I+ GLR++YEAHH K T EA+ AA +S RYISDR
Sbjct: 329 KDAALERRFQPIQVDEPTVEETIQIIRGLRDRYEAHHRVKITDEAVEAAAKMSDRYISDR 388
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGS+ + + + PP+ E++ E + +
Sbjct: 389 FLPDKAIDLMDEAGSKVRLRSY-----------TTPPNLKELEVKLEAIRSEKNAAVQSQ 437
Query: 561 YDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS DT + + E + + E + V DDIAAV ++W+G+PV +I
Sbjct: 438 EFEKAASYRDTEQKMKEELETTKAAWKEKQGKTESEVTVDDIAAVVAMWTGVPVDKIAET 497
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +EE L +RVIGQ+EAV AISRA++R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 498 ESAKLLKMEEILHERVIGQNEAVLAISRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 557
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 558 ARALAEVMFG 567
>gi|297618415|ref|YP_003703574.1| ATPase AAA [Syntrophothermus lipocalidus DSM 12680]
gi|297146252|gb|ADI03009.1| ATPase AAA-2 domain protein [Syntrophothermus lipocalidus DSM
12680]
Length = 830
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 258/615 (41%), Positives = 367/615 (59%), Gaps = 36/615 (5%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+ RFT+RA +A+I +Q EA++LG V T+H+LLGLI E L G+ ++ R
Sbjct: 1 MLRRFTQRAQRAIIHAQEEARNLGHPAVGTEHILLGLIREGEGVGAKAILALGVDLETVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + + K +++ +P + K+V A E +R +G N++ EH
Sbjct: 61 NELKKVLGDVGER---------KESATSTDLPITPRAKKVLNLAFEEARLQGVNYVGTEH 111
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGE-LAKEGREPSLAKGVRENSISG 257
+ L L + A +VL LG+ + + + L E +EP + ++ S
Sbjct: 112 LLLALLREEQSVAAQVLNSLGIRPDAVREQVMLLLGAEGFQANYQEPGTGE-MKNQSQGP 170
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A + GR + L+ F DLT A E +DPVIGRE EI R+ Q+L RRTKNNP+L+
Sbjct: 171 GVAGRRGRGRGKTPVLDTFSRDLTQLAREHKLDPVIGREKEIDRVTQVLSRRTKNNPVLI 230
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
G+ GVGKTAI EGLA RIV+ +VP L KR++ LD+ ++AG K RGE E R+T +++E
Sbjct: 231 GDPGVGKTAIVEGLAQRIVENKVPEVLSDKRVVVLDLSTMVAGTKYRGEFEDRLTKVVNE 290
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ +GD+I+FIDE+HT++G+G +D +N+LKP+L RGE QCI +TT DE+R
Sbjct: 291 IRNAGDIIVFIDELHTIVGAGAA-----EGAIDAANILKPALARGEFQCIGATTIDEYRK 345
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+++ EP+ E+ + IL GLR++YEAHH K T EAI AA LSARYI
Sbjct: 346 HVEKDAALERRFQPIMVDEPTVEETIEILRGLRDRYEAHHGVKITDEAIEAAARLSARYI 405
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQ-EIRTVQAMHEVVQG 556
+DR+LPDKAIDL+DEA S+ + + +L PD+ + E R + E +
Sbjct: 406 TDRFLPDKAIDLIDEAASKVRL---------RNYVL---PDELKEMEARLEEIEKEKEEA 453
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + A + D + V E + D + VV PD+IA V S W+GIPV Q
Sbjct: 454 IMAQEYEKAAGLRDEEQRVKEEIEKQRKEWMSRRDRDSGVVTPDEIAHVVSSWTGIPVVQ 513
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ +E LV LEE L +RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVG
Sbjct: 514 MAEEESERLVKLEEILHQRVIGQDEAVKAVAQAVRRARAGLKDPKRPIGSFIFLGPTGVG 573
Query: 672 KTELAKSLAACYFGS 686
KTELA++LA FGS
Sbjct: 574 KTELARALAEALFGS 588
>gi|150392194|ref|YP_001322243.1| ATPase [Alkaliphilus metalliredigens QYMF]
gi|149952056|gb|ABR50584.1| ATPase AAA-2 domain protein [Alkaliphilus metalliredigens QYMF]
Length = 812
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 260/614 (42%), Positives = 362/614 (58%), Gaps = 56/614 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHP--NGFLESGITIDKA 137
++F +FTERA K ++ SQ+ A++LG + V T+HLLLGLI E G+ D+
Sbjct: 2 AMFGKFTERAQKVIVLSQQAAQALGHNYVGTEHLLLGLIDEGEGVAFQALKNLGVASDQL 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
++ VVS + N S + F+ TKRVFE + +RS ++I E
Sbjct: 62 KKKVVSYVGTGEN--------------SGELLGFTPRTKRVFELSFAETRSLNQSYIGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A +VL LGVD+ K+ RE + K +
Sbjct: 108 HLLLGLIREGEGIAAKVLIELGVDL----------------KKARE-EVIKIINSAGSHP 150
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
TA K+ + AL+Q+ DL + E +DP+IGR EI R+IQ+L RRTKNNP L+
Sbjct: 151 NTAKPKTSPKGNTPALDQYGRDLNEMSREGKLDPIIGRRIEIDRVIQVLSRRTKNNPCLI 210
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA +I + VP L KR+++LD+ ++AG K RGE E R+ +++E
Sbjct: 211 GEPGVGKTAIAEGLAQKIEEGNVPEMLTGKRVVNLDVASMIAGTKYRGEFEERMKKIMTE 270
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++ S DVILFIDE+HT+IG+G +D +N+LKP+L RGELQ I +TT DE R
Sbjct: 271 LRDSTDVILFIDEIHTIIGAGAAE-----GAMDAANILKPALARGELQVIGATTLDEFRK 325
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
FEKD AL RRFQP+ + EP+ ED ++IL GLR++YEAHH K T EA+ AA LS RYI
Sbjct: 326 HFEKDAALERRFQPITVEEPTVEDTIKILAGLRDRYEAHHRVKITDEALEAAAELSDRYI 385
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
DRYLPDKAIDL+DEA S+ IE ++ PP+ E + E +
Sbjct: 386 MDRYLPDKAIDLIDEAASKIRIE-----------TVTAPPNLRTLEDNIEKLAKEKEEAI 434
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSA------SDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
++ + A + D E L SA S ++ +VG ++IA + S W+G+PV +
Sbjct: 435 SIQDFERAAKIRD-EEKKSREDLDSAQRKWKSSKENRNGIVGAEEIAQIVSSWTGVPVMK 493
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ +E L+ LEE L RVIGQ+ AV +IS+A++R+RVGLKDP RP + +F GPTGVG
Sbjct: 494 LQEEESQRLLKLEEALHHRVIGQEPAVKSISQAIRRARVGLKDPKRPIGSFIFLGPTGVG 553
Query: 672 KTELAKSLAACYFG 685
KTEL+++LA FG
Sbjct: 554 KTELSRALAEVMFG 567
>gi|115487910|ref|NP_001066442.1| Os12g0230100 [Oryza sativa Japonica Group]
gi|122248633|sp|Q2QVG9.2|CLPC2_ORYSJ RecName: Full=Chaperone protein ClpC2, chloroplastic; AltName:
Full=ATP-dependent Clp protease ATP-binding subunit ClpC
homolog 2; AltName: Full=Casein lytic proteinase C2;
Flags: Precursor
gi|108862366|gb|ABA96309.2| ATP-dependent Clp protease ATP-binding subunit clpA
CD4B,chloroplast precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|108862367|gb|ABG21929.1| ATP-dependent Clp protease ATP-binding subunit clpA
CD4B,chloroplast precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648949|dbj|BAF29461.1| Os12g0230100 [Oryza sativa Japonica Group]
Length = 919
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 267/613 (43%), Positives = 381/613 (62%), Gaps = 45/613 (7%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKA 137
S+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + A
Sbjct: 87 SMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDA 146
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E ++E +R G+N+I E
Sbjct: 147 RVEVEKII------------GRGNGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSE 193
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LG D +++ V R+ GE + +
Sbjct: 194 HLLLGLLREGEGVAARVLESLGADPSNIRT-QVIRMIGETTE----------------AV 236
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+
Sbjct: 237 GAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 296
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ E
Sbjct: 297 GEPGVGKTAIAEGLAQRISTGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 356
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 357 IKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRK 411
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EP+ ++ + IL GLRE+YE HH ++T +A+ +A LS +YI
Sbjct: 412 HIEKDPALERRFQPVRVPEPTVDETIEILRGLRERYEIHHKLRYTDDALISAAKLSYQYI 471
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV-- 553
SDR+LPDKAIDL+DEAGSR + + +E + L + D + +R+ Q +
Sbjct: 472 SDRFLPDKAIDLIDEAGSRVRLRHAQVPEEARELDKELKQITKDKNEAVRS-QDFEKAGE 530
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
++ ++ + ++ D S+ E S + +V DI + S W+GIPV++++
Sbjct: 531 LRDREMELKAQITALIDKSK---EMSKAETESGETGPLVNEADIQHIVSSWTGIPVEKVS 587
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+DE L+ +EE L +RVIGQDEAV AISR+++R+RVGLK+PNRP A+ +F GPTGVGK+
Sbjct: 588 SDESDKLLKMEETLHQRVIGQDEAVKAISRSIRRARVGLKNPNRPIASFIFAGPTGVGKS 647
Query: 674 ELAKSLAACYFGS 686
ELAK+LAA YFGS
Sbjct: 648 ELAKALAAYYFGS 660
>gi|410461714|ref|ZP_11315360.1| Class III stress response-related ATPase, ClpC [Bacillus
azotoformans LMG 9581]
gi|409925481|gb|EKN62692.1| Class III stress response-related ATPase, ClpC [Bacillus
azotoformans LMG 9581]
Length = 807
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/610 (43%), Positives = 367/610 (60%), Gaps = 50/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + T+H+LLGLI E G I
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHSNIGTEHILLGLIRE----------GEGIAAKALL 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+++ ++ + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 52 ALNLGPEKIQEEVE--ALIGRGDEASQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G + G A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGSNES----------TSSSHSGGVVA 158
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 159 NANTP------TLDSLARDLTQIAREGSLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IVQ EVP L +KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 213 GVGKTAIAEGLAQQIVQNEVPEILRNKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 273 AGNIILFIDELHTLIGAG----GAEGA-IDASNILKPSLARGELQCIGATTLDEYRKYIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+QE+A++IL GLR++YEAHH T EAI AV LSARYISDR
Sbjct: 328 KDAALERRFQPIQVGEPTQEEAIQILYGLRDRYEAHHRVSITDEAIEEAVKLSARYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAG++ + + + PP+ E + + E + +
Sbjct: 388 FLPDKAIDLIDEAGAKVRLRSY-----------TAPPNLKELEQKLEEIRKEKDAAVQSQ 436
Query: 561 YDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ DT + + E + + E + V +DIA V S W+G+PV ++
Sbjct: 437 EFEKAASLRDTEQRLREDVEKTKKEWKERQGKENSEVTTEDIALVVSAWTGVPVSKLAQA 496
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +E L RVIGQ+EAV AI++A++R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 497 ETDRLLNMESILHSRVIGQEEAVKAIAKAIRRARSGLKDPKRPIGSFIFLGPTGVGKTEL 556
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 557 ARALAEAMFG 566
>gi|4105131|gb|AAD02267.1| ClpC protease [Spinacia oleracea]
Length = 891
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 272/620 (43%), Positives = 379/620 (61%), Gaps = 55/620 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 87 VRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 146
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 147 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 193
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D +++ V R+ GE N+
Sbjct: 194 SEHLLLGLLREGEGVAARVLENLGADPSNIRT-QVIRMVGE----------------NTE 236
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP
Sbjct: 237 AVGAGVGGGTTGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTKNNPC 296
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++L MGLL+AG K RGE E R+ L+
Sbjct: 297 LIGEPGVGKTAIAEGLAQRIATGDVPETIEGKKVITLHMGLLVAGTKYRGEFEERLKKLM 356
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI++S ++ILFIDEVHTLIG+G +D +N+LKP RGELQCI +TT DE+
Sbjct: 357 EEIKQSDEIILFIDEVHTLIGAGAA-----EGAIDRANILKPRFRRGELQCIGATTLDEY 411
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T EA+ AA LS +
Sbjct: 412 RKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQ 471
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVV 554
YISDR+LPDKAIDL+DEAGSR L K+ ++ + + +E+R + + +E V
Sbjct: 472 YISDRFLPDKAIDLIDEAGSRV---LPSSLKKLESWL------QHEKELRQLTKEKNEAV 522
Query: 555 QGS--------RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
+G R + D+ A + E E S D +V DI + S W+G
Sbjct: 523 RGQDFEKAGELRDREMDLKAQISALVEKKKEMSKAETEAGDVGPMVTESDIQHIVSSWTG 582
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV++++ DE L+ +E+ L RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F G
Sbjct: 583 IPVEKVSTDESDRLLKMEDTLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 642
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGK+ELAK+LAA YFGS
Sbjct: 643 PTGVGKSELAKALAAYYFGS 662
>gi|68535364|ref|YP_250069.1| ATP-dependent Clp protease [Corynebacterium jeikeium K411]
gi|68262963|emb|CAI36451.1| ATP-dependent Clp protease [Corynebacterium jeikeium K411]
Length = 885
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 266/617 (43%), Positives = 376/617 (60%), Gaps = 44/617 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA++L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARALNHNYIGTEHILLGLIQEGEGVAAKALESMGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I + G P S +PF+ K+V E A+ + G+ +I EH
Sbjct: 61 TEVKDIIGTG-----------GHPPSGY--IPFTPRAKKVLELALREALQLGHKYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKE----GREPSLAKGVRENS 254
I LGL +G A +VL +LG D++ + + L G + G EP+ A GV
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLSRVRQQVIQLLSGYEGNDEESGGGEPATA-GVG--- 163
Query: 255 ISGKTAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN 313
S A PG+ S L+QF +LT A + +DPV+GRE EI+R++Q+L RRTKNN
Sbjct: 164 -SSPEGAPSRPGQKSNSLVLDQFGRNLTQAAKDGKLDPVVGRENEIERVMQVLSRRTKNN 222
Query: 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373
P+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+
Sbjct: 223 PVLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKK 282
Query: 374 LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433
++ EI + GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT D
Sbjct: 283 VLKEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLD 337
Query: 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493
E+R EKD AL RRFQPV + EPS E V IL GLR++YEAHH T A+ AA L+
Sbjct: 338 EYRKHIEKDAALERRFQPVQVPEPSVELTVEILKGLRDRYEAHHRVSITDGALKAAAQLA 397
Query: 494 ARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM--- 550
RYI+DR+LPDKA+DL+DEAG+R I+ K Q DD E+R +
Sbjct: 398 DRYINDRFLPDKAVDLIDEAGARMRIKRMTAPKAIQDI------DDKIAEVRRKKEAAID 451
Query: 551 -HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ + + L+ D+ +G+ E + A + DE A VG + IA V W+GIPV
Sbjct: 452 DQDFEKAAALRDDE--RKLGE--ERAEKEKAWRAGELDEVAEVGEEQIAEVMGTWTGIPV 507
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQD+AV A+SRA++R+R GLKDP RP+ + +F GP+G
Sbjct: 508 FKLTEEESTRLLHMEDELHKRIIGQDDAVKAVSRAIRRTRAGLKDPKRPSGSFIFAGPSG 567
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 568 VGKTELSKALAEFLFGD 584
>gi|357160412|ref|XP_003578756.1| PREDICTED: chaperone protein ClpC2, chloroplastic-like
[Brachypodium distachyon]
Length = 920
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 268/620 (43%), Positives = 382/620 (61%), Gaps = 59/620 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKA 137
++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGL+ E L+S GI + A
Sbjct: 88 AMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAKVLKSMGINLKDA 147
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E ++E +R G+N+I E
Sbjct: 148 RVEVEKII------------GRGNGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSE 194
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LG D +++ V R+ GE + +
Sbjct: 195 HLLLGLLREGEGVAARVLESLGADPSNIRTQVV-RMIGETTE----------------AV 237
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+
Sbjct: 238 GAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 297
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ E
Sbjct: 298 GEPGVGKTAIAEGLAQRISSGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 357
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 358 IKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRK 412
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EPS ++ + IL GL+E+YE HH ++T +A+ AA LS +YI
Sbjct: 413 HVEKDPALERRFQPVKVPEPSVDETIEILRGLQERYEIHHKLRYTDDALIAAAKLSYQYI 472
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
SDR+LPDKAIDL+DEAGSR R + Q ++ D ++I + +E V+G
Sbjct: 473 SDRFLPDKAIDLIDEAGSRV------RLRHAQVPEEARELDKELKQI--TKDKNEAVRGQ 524
Query: 558 -----------RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
++ + ++ D S+ ++++ S + +V DI + S W+G
Sbjct: 525 DFEKAGELRDREMELKAQITALIDKSKEMIKAETDSG---ETGPMVTEADIQHIVSSWTG 581
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV++++ DE L+ +EE L KRVIGQDEAV AISR+V+R+RVGLK+PNRP A+ +F G
Sbjct: 582 IPVEKVSTDESDKLLKMEETLHKRVIGQDEAVKAISRSVRRARVGLKNPNRPIASFIFAG 641
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGK+ELAK+LA+ YFGS
Sbjct: 642 PTGVGKSELAKALASYYFGS 661
>gi|428779009|ref|YP_007170795.1| chaperone ATPase [Dactylococcopsis salina PCC 8305]
gi|428693288|gb|AFZ49438.1| ATPase with chaperone activity, ATP-binding subunit
[Dactylococcopsis salina PCC 8305]
Length = 793
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 260/623 (41%), Positives = 367/623 (58%), Gaps = 104/623 (16%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL--ESGITIDKAR 138
+FE FT++A+KAV+ +Q EA+ + +++V ++ +LLGLIAE L + G+ + AR
Sbjct: 1 MFEYFTDKAIKAVVLAQEEARRMKQNLVGSEQVLLGLIAEASSDAAKLLNQMGVKLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + S + + + +PF+ KR+FE A+E +R R + I PEH
Sbjct: 61 QVVEGLVGSGSG-------------NVPSNIPFTPRAKRIFEQALEIARQRSHESILPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L + T ++G A +VL +LGVD +A G E SL +N SG
Sbjct: 108 ILLAM-TREEGVATKVLSQLGVDPKQVA-------------NGLEESL-----DNPSSGD 148
Query: 259 -------TAALK---------SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRI 302
TA++ +P + L+ + V+LT RA + IDP+IGR+ E++R
Sbjct: 149 DEPAAPATASMGERRQRGFGFNPQQQGEGGLKSYAVNLTDRAQNDEIDPIIGRDQEVERT 208
Query: 303 IQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362
IQIL RRTKNNP+L+GE GVGKTAIAEGLA RI + +VP L K++ SLDMGLL+AG +
Sbjct: 209 IQILGRRTKNNPVLVGEPGVGKTAIAEGLAQRIARKDVPETLHDKQVYSLDMGLLIAGTR 268
Query: 363 ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG 422
RGE E R+ ++ E+Q++G++IL IDE+HTLIG G + G+D +NLLKP+L RG
Sbjct: 269 FRGEFEERLKGIVKEVQEAGNIILVIDEIHTLIGGGAM-----EGGMDAANLLKPALARG 323
Query: 423 ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFT 482
ELQC+ +TT DE+R EKD AL RRFQPV++ EPS E + IL G+R+ YE +H +
Sbjct: 324 ELQCVGTTTMDEYRQYIEKDAALERRFQPVMVDEPSVEQTIEILEGIRKPYEEYHKVTIS 383
Query: 483 LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQ 542
EA+ AA LS RYI+DR LPDKAIDL+DEAGSR H+
Sbjct: 384 PEALEAAAKLSDRYINDRQLPDKAIDLIDEAGSRLHLN---------------------- 421
Query: 543 EIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVAS 602
S+ + S E + SA E VVG +++AA+ S
Sbjct: 422 -----------------------HSLAEKSSDETEKAKLSA----ETPVVGLEEVAAIVS 454
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
W+G+PV ++T E +L+ LE L +R+IGQ EAV+A+SRA++R+RVG+KD +RP A+
Sbjct: 455 SWTGVPVTKMTQAESEVLLNLEGTLHERIIGQSEAVSAVSRAIRRARVGMKDRDRPIASF 514
Query: 663 LFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTEL K+LA FG
Sbjct: 515 IFSGPTGVGKTELTKALAQYLFG 537
>gi|311029019|ref|ZP_07707109.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus sp. m3-13]
Length = 812
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 262/611 (42%), Positives = 363/611 (59%), Gaps = 52/611 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMP-FSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
++++ + G+ S +P ++ K+V E +++ +R G++++ EH+
Sbjct: 50 LIALGLGPEKIQKEVENLIGRGQDSGQSIPHYTPRAKKVIELSMDEARKLGHSYVGTEHV 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A RVL LGV +N + L + G +
Sbjct: 110 LLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLG------------SNESSGGHSGGAS 157
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A + +P L+ DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 ANVNTP------TLDSLARDLTAVAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI+
Sbjct: 212 PGVGKTAIAEGLAQQIVSNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 272 QAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EP+ ++++IL GLR++YEAHH T EAI AV LS RYISD
Sbjct: 327 EKDAALERRFQPITVDEPTTAESIQILRGLRDRYEAHHRVSITDEAIEQAVKLSDRYISD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEAGS+ + F + PP+ E++ +E +
Sbjct: 387 RFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEVKLESVRNEKDAAVQS 435
Query: 560 KYDDVVASMGDTSEIVVES-----SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ + AS+ DT + + E E + V +DIA V S W+GIPV ++
Sbjct: 436 QEFEKAASLRDTEQRLREQLEETKKTWKEKQGQENSEVTVEDIAMVVSSWTGIPVSKLAQ 495
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ +E L RVIGQDEAV A+S+AV+R+R GLKDP RP + +F GPTGVGKTE
Sbjct: 496 TETDKLLNMESLLHSRVIGQDEAVKAVSKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 555
Query: 675 LAKSLAACYFG 685
LA++LA FG
Sbjct: 556 LARALAESIFG 566
>gi|326504928|dbj|BAK06755.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 886
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 254/611 (41%), Positives = 376/611 (61%), Gaps = 40/611 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FE FTE+A++ ++ +Q E++ LG V ++ +LLGL+ E +GI R A
Sbjct: 52 MFESFTEKAIRVIMLAQEESRRLGHHTVGSEQILLGLVGEG--------TGIAAKVLRSA 103
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+++ + + + +G P ++PF+ S K+V E++ E SR G+N+I EH+
Sbjct: 104 GLNLKDA--RAEVEKVLGRG-PGLIPVEIPFTASAKKVIESSNEESRQLGHNYIGTEHLL 160
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL DDG+A VLK D+ + V ++ E++++ +
Sbjct: 161 LGLIREDDGAAAIVLKNFQADLGDIRN-EVIKMITEMSEDQ--------------TVGAG 205
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+GE
Sbjct: 206 VGGGSSGAKMPTLEEYGTNLTKLAQEGKLDPVVGRKKQIERVLQILGRRTKNNPCLIGEP 265
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP + K +++LDMGLL+AG K RGE E R+ L+ EI++
Sbjct: 266 GVGKTAIAEGLAQRIATGDVPETVEGKTVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ 325
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+GD+ILF+DEVHTL+G+G +D +N+LKP+L RGELQC+ +TT DE+R E
Sbjct: 326 NGDIILFLDEVHTLVGAGAA-----EGAIDAANILKPALARGELQCLGATTIDEYRKHIE 380
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EP+ ++ + IL GLRE+YE HH ++T EA+ AA LS +YISDR
Sbjct: 381 KDPALERRFQPVKVPEPTVDETIGILKGLRERYEIHHKLRYTDEALIAAAQLSYQYISDR 440
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQE----IRTVQ-AMHEVVQ 555
+LPDKAIDLVDEAGS + K E + L K + ++ IR+ Q ++
Sbjct: 441 FLPDKAIDLVDEAGSLVRLRHAKLPDEAKD--LDKKLKEITRQKNDAIRSQQFETAAELR 498
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
L+ + S+ D S+ V ++ + S + +V DI + + W+ +PV++++ D
Sbjct: 499 SEELELKTQIMSLVDKSKEVSKAEVESGASTG--PMVTEADIQRIVASWTSVPVEKVSVD 556
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +EE L RVIGQDEAV AI RA++R+RVGL++PNRP A+ +F GPTGVGK+EL
Sbjct: 557 ESSRLLKMEETLHGRVIGQDEAVRAIGRAIRRARVGLRNPNRPVASFIFAGPTGVGKSEL 616
Query: 676 AKSLAACYFGS 686
AK+LAA Y+GS
Sbjct: 617 AKALAASYYGS 627
>gi|381208304|ref|ZP_09915375.1| ATP-dependent Clp protease [Lentibacillus sp. Grbi]
Length = 810
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 259/609 (42%), Positives = 367/609 (60%), Gaps = 49/609 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F RFTERA K + SQ EA LG + + T+H+LLGL+ R NG LES G+ +
Sbjct: 2 MFGRFTERAQKVLALSQEEAVRLGHNNIGTEHILLGLV---REGNGIAAKALESLGLEVT 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K ++ V + + +P + P K+V E + + +R G++++
Sbjct: 59 KIQQEVEKLIGTGK-----------QPMQTIHYTP---RAKKVVELSQDEARKLGHSYVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL +G A RVL LGV +N + L ++ GR ++
Sbjct: 105 TEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESQAGR----------HNR 154
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S +++ +P L+ DLT A E +DPVIGR EI+R+IQ+L RRTKNNP+
Sbjct: 155 SSQSSNANTP------TLDSLARDLTESAKEGNVDPVIGRSQEIERVIQVLSRRTKNNPV 208
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+AEGLA +IV E+P L KR+M+LDMG ++AG K RGE E R+ ++
Sbjct: 209 LIGEPGVGKTAVAEGLAQQIVNNEIPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVM 268
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+++ ++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 269 EEIRQANNIILFIDELHTLIGAG----GAEG-AIDASNILKPALSRGELQCIGATTLDEY 323
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EP+ ++ V+IL GLR++YEAHH E+I AA +LS R
Sbjct: 324 RKYIEKDAALERRFQPIQVDEPTLDETVQILKGLRDRYEAHHRVTIPDESIEAAANLSDR 383
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI+DR+LPDKAIDL+DEAGS+ + + + + L + DD +E + E +
Sbjct: 384 YITDRFLPDKAIDLIDEAGSKVRLSSYTVPPDLKE--LEQKLDDVRKEKDSAVQSQEFEK 441
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ L+ D + E + D E V +DIA V S+W+G+PV ++T D
Sbjct: 442 AASLR-DSEQRLREELEETKNKWKEKQGQKDSEVTV---EDIAKVVSIWTGVPVSRLTKD 497
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LEE L RVIGQ+EAV A+++A++R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 498 ESERLLNLEETLHNRVIGQEEAVEAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 557
Query: 676 AKSLAACYF 684
A++LA F
Sbjct: 558 ARALAESMF 566
>gi|440785432|ref|ZP_20962189.1| ATPase with chaperone activity clpC, two ATP-binding domain protein
[Clostridium pasteurianum DSM 525]
gi|440218328|gb|ELP57550.1| ATPase with chaperone activity clpC, two ATP-binding domain protein
[Clostridium pasteurianum DSM 525]
Length = 812
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/613 (43%), Positives = 364/613 (59%), Gaps = 58/613 (9%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-----GITIDKAR 138
RF ER K + +++ EA+ + T+H+LLG++ E+ NG + GITID R
Sbjct: 5 RFNERTEKVLFYAKEEAQMFQHGYIGTEHILLGILKEE---NGISKKILNNLGITIDAVR 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + +G ++P + TKR+ E + + + +N+I+PEH
Sbjct: 62 NLIA------------EYEGKGDVDLYRNEVPLTPRTKRLLEISALEATNLNHNYISPEH 109
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L L +G A +L L D + L + +L A EG +
Sbjct: 110 ILLALIREGEGVAFTILGNLNADFDRLRKEILEKLA---AGEG--------------NVS 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ AL QF DLT A+E +DPVIGR+ E QR+++ILCRRTKNNP L+G
Sbjct: 153 NNKTSNSTNNSTPALNQFGRDLTLMAAEGKLDPVIGRDGETQRVLEILCRRTKNNPCLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTAIAEGLA RIV +P L KR+++LD+ ++AG+K RGE E R+ +++EI
Sbjct: 213 DPGVGKTAIAEGLAQRIVSGNIPEILKDKRVITLDISSMVAGSKYRGEFEERLKRVMTEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ SG+VILFIDE+HT+IG+G G +G +D SN+LKPSL RGE+QCI +TT DE+R
Sbjct: 273 RNSGNVILFIDEIHTIIGAG----GAEG-AIDASNILKPSLARGEIQCIGATTIDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS+E+AV IL GLR+KYEAHH K T +A+ AAV+LS RYI+
Sbjct: 328 IEKDSALERRFQPVTVGEPSKEEAVLILKGLRDKYEAHHRVKITDDALEAAVNLSDRYIT 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAG++ IE L+ PPD QE + E R
Sbjct: 388 DRYLPDKAIDLIDEAGAKVRIE-----------NLTAPPDLKNQEEELEKTEKEKADAIR 436
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQIT 613
L+ + A + D + + E + D + +V IAAV + W+ IPV+++T
Sbjct: 437 LQDFEKAARLRDKEKELKEKIEDFKKNWKNRKDVKNHIVAEAQIAAVVAKWANIPVEKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L KRVIGQ+EAV ++SRAV+R+RVGLKDP RP + +F GPTGVGKT
Sbjct: 497 EKESEKLLKLEEILHKRVIGQNEAVKSVSRAVRRARVGLKDPKRPIGSFIFLGPTGVGKT 556
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 557 ELSKALAEAMFGD 569
>gi|428223611|ref|YP_007107708.1| ATPase [Geitlerinema sp. PCC 7407]
gi|427983512|gb|AFY64656.1| ATPase AAA-2 domain protein [Geitlerinema sp. PCC 7407]
Length = 822
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 276/612 (45%), Positives = 377/612 (61%), Gaps = 52/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL--ESGITIDKAR 138
+FE FT+RAV ++F+Q EA+ LG + T+ +LLG++ + P L + G+T AR
Sbjct: 1 MFEYFTDRAVAVIVFAQEEARRLGHSFIGTEQILLGVLRVESSPAARLLTDMGVTAAAAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G A +P + T++VFE A++ + ++ PEH
Sbjct: 61 REVEGII------------GRGSGIVPA-DIPPTPRTRQVFEQALQGVQQESQAYVTPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L L D A +VL LGVD+ A RLQ +A E + A+ R S +
Sbjct: 108 ILLSLVQAGDSVAAKVLTNLGVDL----AEVRDRLQALMADPA-EMAFAQPSR----SAQ 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
TAA GR ALE F ++LT RA +DP++GRE E++R++QIL RRTKNNPILLG
Sbjct: 159 TAA--PMGR----ALETFGINLTMRAIAGELDPMVGREAEVERVVQILGRRTKNNPILLG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTAIAEGLA RIV +VP L ++I+SL MG LMAGA+ RGE E R+T +++E+
Sbjct: 213 DPGVGKTAIAEGLAQRIVNGDVPEILRDRQIISLAMGTLMAGARFRGEFEERLTQILAEV 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VI+FIDE+H+L+G+G GLD SNLLKP+L RGELQCI +TT DE+R
Sbjct: 273 RQAGNVIVFIDEIHSLVGAGAT-----AGGLDASNLLKPALARGELQCIGATTLDEYRQH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV + P+ + + IL GLR++YE HH+ + EA+ AA LS RYI
Sbjct: 328 IEQDAALERRFQPVKVEAPTLTETIEILWGLRDRYEQHHHLTISNEALVAAARLSDRYIP 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR + + P Q++R V A E ++
Sbjct: 388 DRHLPDKAIDLIDEAGSRVRLRHTRH----------SPAQRIRQDLRAVTAEKEAAVTAQ 437
Query: 559 LKYDDVVASMGDTSEIVVESSLP---SASDDDEP-AVVGPDDIAAVASLWSGIPVQQITA 614
+D A E+ ++ +L +A D EP VV +DIA V S W+GIPV +T
Sbjct: 438 -DFDQ--AGKLRDRELALQQTLADLRTAQRDAEPRPVVTAEDIAQVISAWTGIPVNHLTE 494
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E ++L+ LE+ L +RVIGQ EAV A +RA++RSRVGL P+RP A++LF GPTGVGKTE
Sbjct: 495 SESLMLMHLEDTLHERVIGQQEAVTAAARAIRRSRVGLGSPHRPIASLLFSGPTGVGKTE 554
Query: 675 LAKSLAACYFGS 686
LAK+LAA FGS
Sbjct: 555 LAKALAATVFGS 566
>gi|255087254|ref|XP_002505550.1| predicted protein [Micromonas sp. RCC299]
gi|226520820|gb|ACO66808.1| predicted protein [Micromonas sp. RCC299]
Length = 886
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 278/629 (44%), Positives = 384/629 (61%), Gaps = 51/629 (8%)
Query: 68 CARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNG 126
R RR + ++FERFTE+A+K V+ +Q EA+ LG + V T+ ++LGLI E
Sbjct: 37 SGRGRRFVT--KAMFERFTEKAIKVVMLAQEEARRLGHNFVGTEQIMLGLIGEGTGIAAK 94
Query: 127 FLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEY 185
L+S GI++ +AR V I +G F A ++PF+ KRV E A+E
Sbjct: 95 VLKSMGISLKEARIEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELALEE 141
Query: 186 SRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS 245
+R G+N+I EH+ LGL +G A RVL+ L D + + + V R+ GE
Sbjct: 142 ARQLGHNYIGTEHLLLGLLREGEGVAARVLENLDADPSKIRS-QVIRMVGE--------- 191
Query: 246 LAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQI 305
+ ++ A + G ++ LE+F DLT +A E +DP IGR EI R+ QI
Sbjct: 192 -----SQEAVGAAPGAGGAAGGSKTPTLEEFGSDLTKQAEEAKLDPCIGRSNEIIRVTQI 246
Query: 306 LCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG 365
L RRTKNNP L+GE GVGK+AIAEGLA +I +VP L KR+M+LDMGLL+AG K RG
Sbjct: 247 LGRRTKNNPCLIGEPGVGKSAIAEGLAQKIAANDVPETLEGKRMMTLDMGLLVAGTKYRG 306
Query: 366 ELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQ 425
E E R+ L+ E++ D+ILFIDEVHTLIG+G +G +D +N+LKP+L RGELQ
Sbjct: 307 EFEERLKKLMDEVKADEDIILFIDEVHTLIGAGAA----EGA-IDAANILKPALARGELQ 361
Query: 426 CIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA 485
CI +TT DE+R EKD AL RRFQPV + EPS E+A+ IL GLRE+YE HH ++T EA
Sbjct: 362 CIGATTIDEYRKHIEKDPALERRFQPVQVPEPSVEEAILILQGLRERYETHHKLRYTDEA 421
Query: 486 INAAVHLSARYISDRYLPDKAIDLVDEAGSR---AHIELFKRKKEQQTCILSKPPDDYWQ 542
I AA + +YISDR+LPDKAIDL+DEAGSR AH L + KE L K +
Sbjct: 422 IEAAAKFAHQYISDRFLPDKAIDLIDEAGSRVRLAHAALPEEAKE-----LDKELKALLK 476
Query: 543 EIRTVQAMHEVVQGSRLKYDDV-----VASMGDTSEIVVESSLPSASDDDEPAVVGPDDI 597
E T + L+ +V + + + +++L + + P V DI
Sbjct: 477 EKDTAIRAQDFEAAGALRDKEVELKTEIQKITKAKQEENKAALEAGGGEAGPTVT-ESDI 535
Query: 598 AAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNR 657
A + + W+GIPV+++++DE L+ +EE L R+IGQ+EAV A SRA++R+R GLK+PNR
Sbjct: 536 AKIVASWTGIPVEKVSSDEGNQLMNMEETLHSRLIGQEEAVVACSRAIRRARTGLKNPNR 595
Query: 658 PTAAMLFCGPTGVGKTELAKSLAACYFGS 686
P A+ +F GPTGVGK+ELAKS+++ YFGS
Sbjct: 596 PVASFIFSGPTGVGKSELAKSISSFYFGS 624
>gi|377574374|ref|ZP_09803404.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobilicoccus
pelagius NBRC 104925]
gi|377536930|dbj|GAB48569.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobilicoccus
pelagius NBRC 104925]
Length = 880
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/616 (42%), Positives = 376/616 (61%), Gaps = 51/616 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I +S+ +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVEEIIGKGQQ-------------ASSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL++LG D+N + + L G +G + + A GV S SG+
Sbjct: 108 ILLGLIREGEGVAAQVLQKLGADLNRVRQQVIQLLSG---YQGGKETAAAGVGGQSTSGE 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNPIL+G
Sbjct: 165 GTPAGS------LVLDQFGRNLTQAAREGKLDPVIGRAQEIERVMQVLSRRTKNNPILIG 218
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K I +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 219 EPGVGKTAVVEGLAQDIVKGEVPETLKDKHIYTLDLGALVAGSRYRGDFEERLKKVLKEI 278
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 279 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKH 333
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EP+ A+ IL GLR++YEAHH T A+ AA +++ RYI+
Sbjct: 334 IEKDPALERRFQPIQVAEPTLSHAIEILKGLRDRYEAHHRVSITDGALVAAANMADRYIN 393
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQ 555
DRYLPDKAIDL+DEAG+R I KR ++ PPD ++ ++I V+ E +
Sbjct: 394 DRYLPDKAIDLIDEAGARLRI---KR--------MTAPPDLREFDEKIAHVRREKEAAID 442
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
G + A + D + ++E+ A D D A V D IA V + +GIPV
Sbjct: 443 GQDFEK---AAKLRDDEKQLIEAKNTREKEWKAGDMDVVAEVNEDLIAEVLAASTGIPVF 499
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L+ +E++L KR++G D+A+ A+S+A++R+R GLKDP RP + +F GPTGV
Sbjct: 500 KLTEEESTRLLNMEDELHKRIVGNDDAIKALSQAIRRTRAGLKDPRRPGGSFIFAGPTGV 559
Query: 671 GKTELAKSLAACYFGS 686
GKTELAK+LA FG
Sbjct: 560 GKTELAKALAEFLFGD 575
>gi|359426609|ref|ZP_09217692.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
amarae NBRC 15530]
gi|358238174|dbj|GAB07274.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
amarae NBRC 15530]
Length = 845
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 258/613 (42%), Positives = 372/613 (60%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P + + L+QF +LTA ASE +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 SSESGTP--STSLVLDQFGRNLTAAASEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGQVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDERIAEARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKTLVAERAEREKQWRSGDMDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|374709167|ref|ZP_09713601.1| class III stress response-related ATPase [Sporolactobacillus
inulinus CASD]
Length = 816
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 266/621 (42%), Positives = 361/621 (58%), Gaps = 72/621 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGIT------- 133
+F RFTERA K + SQ EA LG + + T+H+LLGL+ R +G +
Sbjct: 2 MFGRFTERAQKVLALSQEEAMRLGHNNIGTEHILLGLV---REGDGIAAKALLALNLDPE 58
Query: 134 -IDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYN 192
I K EA++ G+ ++ KRV E +++ +R G++
Sbjct: 59 KIQKEVEALI-----------------GRGTDEVQTPHYTPRAKRVIELSMDEARKIGHS 101
Query: 193 FIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRE 252
++ EHI LGL +G A RVL LGV +N + L A G
Sbjct: 102 YVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSHEANSG----------- 150
Query: 253 NSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKN 312
S G+ A+ S L+ DLTA AS+ +DPVIGR EI+R+I++L RRTKN
Sbjct: 151 -SAQGRNASHAS-----TPTLDSLARDLTAMASDGSLDPVIGRSKEIERVIEVLSRRTKN 204
Query: 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVT 372
NP+L+GE GVGKTA+AEGLA IV EVP L KR+M+LDMG ++AG K RGE E R+
Sbjct: 205 NPVLIGEPGVGKTAVAEGLAQEIVNNEVPEILREKRVMTLDMGTVVAGTKYRGEFEDRLK 264
Query: 373 TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432
++ EI+++G+VILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT
Sbjct: 265 KVMDEIRQAGNVILFIDELHTLIGAG----GAEG-AIDASNILKPSLSRGELQCIGATTL 319
Query: 433 DEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492
DE+R EKD AL RRFQP+ + EP++E +V IL GLR++YEAHH K T EAI AV L
Sbjct: 320 DEYRKYIEKDAALERRFQPIKVKEPTKEQSVLILKGLRDRYEAHHRVKITDEAIKEAVRL 379
Query: 493 SARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAM 550
S RYISDR+LPDKAIDL+DEA S+ + + + PP+ + Q + +V+
Sbjct: 380 SDRYISDRFLPDKAIDLIDEAASKVRLRSY-----------TAPPNLKEMEQHLESVKKE 428
Query: 551 HE-VVQGSRLKYDDVVASMGDTSEIVVES-----SLPSASDDDEPAVVGPDDIAAVASLW 604
+ VQ + AS+ D + + E E V PDD+A V S W
Sbjct: 429 KDSAVQSQEF---EKAASLRDQEQKLKEQVDRCKKEWKEKQGKENTQVLPDDVALVVSNW 485
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+GIPV ++ E L+ +E L +RVIGQ+EA+ AIS A++R+R GLKDP RP + +F
Sbjct: 486 TGIPVVKMEQKESERLLNMESILHERVIGQNEAINAISHAIRRARAGLKDPKRPIGSFIF 545
Query: 665 CGPTGVGKTELAKSLAACYFG 685
GPTGVGKTELA+++A FG
Sbjct: 546 LGPTGVGKTELARAVAETLFG 566
>gi|381184365|ref|ZP_09892990.1| ClpC ATPase [Listeriaceae bacterium TTU M1-001]
gi|380315745|gb|EIA19239.1| ClpC ATPase [Listeriaceae bacterium TTU M1-001]
Length = 820
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 266/639 (41%), Positives = 371/639 (58%), Gaps = 71/639 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E GI+ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISAEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G+ + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GQGEKTVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N + L G G
Sbjct: 108 ILLGLIREGEGVAARVLSNLGVSLNKARQQVLQLLGG---------------------GD 146
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+AA T+A+ L+ DLT A EE +DPVIGR EIQR+I++L RRTKNNP+L+
Sbjct: 147 SAASGRQTNTQATPTLDSLARDLTVIAREENLDPVIGRAKEIQRVIEVLSRRTKNNPVLI 206
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ E
Sbjct: 207 GEPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDE 266
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 267 IRQAGNVILFIDELHTLIGAG----GAEG-AIDASNILKPPLARGELQCIGATTLDEYRK 321
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS E++++IL GLR++YEAHH T +A++AAV LS RYI
Sbjct: 322 YIEKDAALERRFQPIKVDEPSVEESIQILHGLRDRYEAHHRVAITDDALDAAVRLSDRYI 381
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHE---VV 554
SDR+LPDKAID++DEAGS+ ++ + + P D E+ + E V
Sbjct: 382 SDRFLPDKAIDVIDEAGSKVRLKAY-----------TTPTDLKEMELELSELKKEKDAAV 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVES------SLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
QG + AS D + +S S D V D +A V + W+GIP
Sbjct: 431 QGQEFEK---AASFRDREHKLRKSLEEEKLSWKEKQGRDNSQVT-EDIVAEVVASWTGIP 486
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++ E L+ +E+ L +RVIGQDEAV A+S AV+R+R GLKDP RP + +F GPT
Sbjct: 487 VMKLAETETDKLLNMEKLLHERVIGQDEAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPT 546
Query: 669 GVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GVGKTELA++LA FG +R+ + F++ ++
Sbjct: 547 GVGKTELARALAESMFGDEDAMIRVDMSEYMEKFSTARL 585
>gi|414079572|ref|YP_007000996.1| ATP-dependent Clp protease [Anabaena sp. 90]
gi|413972851|gb|AFW96939.1| ATP-dependent Clp protease [Anabaena sp. 90]
Length = 816
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 260/613 (42%), Positives = 375/613 (61%), Gaps = 61/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE FT A++ ++ +Q EA+ LG + V T+ +LLGL+ E E G+T+ +AR
Sbjct: 1 MFEHFTSEAIRVIMLAQEEARRLGHNFVGTEQILLGLMGEGTGVAAKVLAELGVTLKEAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F ++PF+ K +FE + + G+N+I EH
Sbjct: 61 REVEKII------------GRGSGFVPP-EIPFTPKVKSLFEQSFREAHGLGHNYINTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL+ LGVD+ + + +SRL G + ++ G R NS
Sbjct: 108 LLLGLTEAGEGVAAKVLQNLGVDLPVIRSAVMSRL-------GEDTAVVTGGRSNS---- 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
R + ++E F +LT A + +DPV+GR+ EI+R +QIL RRTKNNP+L+G
Sbjct: 157 -------QRNQNLSIEAFGRNLTKLAQDGRLDPVVGRQKEIERTVQILGRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV +VP LL K+++SLDMG ++AG + RG+ E R+ ++ E+
Sbjct: 210 EPGVGKTAIAEGLAQRIVNQDVPEILLDKQVISLDMGSVVAGTRFRGDFEERLKKIMEEV 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G++IL IDE+HTL+G+G G +G GLD +N+LKP+L RGELQCI +TT DE+R
Sbjct: 270 RSAGNIILVIDEIHTLVGAG----GTEG-GLDAANILKPALARGELQCIGATTLDEYRQH 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+L+ EPS + + IL GLR YE HH T EA+ AA L+ RYIS
Sbjct: 325 IERDAALERRFQPILVGEPSVAETIDILYGLRGAYEQHHRVNITDEAVVAAAELADRYIS 384
Query: 499 DRYLPDKAIDLVDEAGSR-----AHIELFKR-KKEQQTCILSKPPDDYWQEIRTVQAMHE 552
DR+LPDKAIDL+DEAGSR +HI K K+E T +K + IR + +
Sbjct: 385 DRFLPDKAIDLIDEAGSRVRLRHSHIANNKELKRELTTATKAKS-----EAIR----VQD 435
Query: 553 VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ +L+ ++ E+ L + +V +DIA + + W+G+PV ++
Sbjct: 436 FSKAGKLRIQEL--------ELQTRLDLEENQETVNAPLVNEEDIAQIVASWTGVPVNKL 487
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E LL+ LE+ L R+IGQ++AV ++SRA++R+RVGLK PNRP A+ +F GPTGVGK
Sbjct: 488 TESESELLLHLEDTLHTRLIGQEQAVTSVSRAIRRARVGLKSPNRPIASFIFSGPTGVGK 547
Query: 673 TELAKSLAACYFG 685
TELAK+LAA +FG
Sbjct: 548 TELAKALAAYFFG 560
>gi|222616839|gb|EEE52971.1| hypothetical protein OsJ_35634 [Oryza sativa Japonica Group]
Length = 832
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 266/612 (43%), Positives = 380/612 (62%), Gaps = 45/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + AR
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E ++E +R G+N+I EH
Sbjct: 61 VEVEKII------------GRGNGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ LG D +++ V R+ GE + +
Sbjct: 108 LLLGLLREGEGVAARVLESLGADPSNIRT-QVIRMIGETTE----------------AVG 150
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+G
Sbjct: 151 AGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIG 210
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ EI
Sbjct: 211 EPGVGKTAIAEGLAQRISTGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEI 270
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 271 KQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKH 325
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ ++ + IL GLRE+YE HH ++T +A+ +A LS +YIS
Sbjct: 326 IEKDPALERRFQPVRVPEPTVDETIEILRGLRERYEIHHKLRYTDDALISAAKLSYQYIS 385
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV--V 554
DR+LPDKAIDL+DEAGSR + + +E + L + D + +R+ Q + +
Sbjct: 386 DRFLPDKAIDLIDEAGSRVRLRHAQVPEEARELDKELKQITKDKNEAVRS-QDFEKAGEL 444
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ ++ + ++ D S+ E S + +V DI + S W+GIPV+++++
Sbjct: 445 RDREMELKAQITALIDKSK---EMSKAETESGETGPLVNEADIQHIVSSWTGIPVEKVSS 501
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
DE L+ +EE L +RVIGQDEAV AISR+++R+RVGLK+PNRP A+ +F GPTGVGK+E
Sbjct: 502 DESDKLLKMEETLHQRVIGQDEAVKAISRSIRRARVGLKNPNRPIASFIFAGPTGVGKSE 561
Query: 675 LAKSLAACYFGS 686
LAK+LAA YFGS
Sbjct: 562 LAKALAAYYFGS 573
>gi|404330422|ref|ZP_10970870.1| class III stress response-related ATPase [Sporolactobacillus vineae
DSM 21990 = SL153]
Length = 815
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 271/626 (43%), Positives = 369/626 (58%), Gaps = 82/626 (13%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLE--------SGI 132
+F RFTERA K + SQ EA LG + + T+H+LLGL+ R +G S
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRLGHNNIGTEHILLGLV---REGDGIAAKALLALNLSPE 58
Query: 133 TIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYN 192
I K EA++ G+ + ++ KRV E +++ +R G++
Sbjct: 59 KIQKEVEALI-----------------GRGSETVQNPHYTPRAKRVIELSMDEARKIGHS 101
Query: 193 FIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRE 252
++ EHI LGL +G A RVL LGV +N A V +L G
Sbjct: 102 YVGTEHILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG----------------- 143
Query: 253 NSISGKTAALKSPGRTRASA----LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR 308
S + A + GR A A L+ DLTA A E +DPVIGR EI+R+I++L R
Sbjct: 144 ---SHEATAGGAQGRASAHASTPTLDSLARDLTAMAGEGGLDPVIGRSKEIERVIEVLSR 200
Query: 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368
RTKNNP+L+GE GVGKTA+AEGLA IV EVP L KR+M+LDMG ++AG K RGE E
Sbjct: 201 RTKNNPVLIGEPGVGKTAVAEGLAQEIVNNEVPEILRDKRVMTLDMGTVVAGTKYRGEFE 260
Query: 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA 428
R+ ++ EI+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI
Sbjct: 261 DRLKKVMDEIRQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPSLSRGELQCIG 315
Query: 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINA 488
+TT DE+R EKD AL RRFQP+ + EP++E++V IL GLR++YEAHH K T A+ A
Sbjct: 316 ATTLDEYRKYIEKDAALERRFQPIKVKEPTKEESVLILKGLRDRYEAHHRVKITDAAVEA 375
Query: 489 AVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRT 546
AV+LS RYISDR+LPDKAIDL+DEA S+ + + + PPD + Q++ T
Sbjct: 376 AVNLSDRYISDRFLPDKAIDLMDEASSKVRLRSY-----------TAPPDLKELEQKLET 424
Query: 547 VQAMHE-VVQGSRLKYDDVVASMGDTSEI------VVESSLPSASDDDEPAVVGPDDIAA 599
V+ + VQ + AS+ D+ + V E + V+ DD+A
Sbjct: 425 VKKEKDAAVQSQEFEK---AASLRDSEQKLKEQVDVCEKEWKEKQGKENTQVLA-DDVAQ 480
Query: 600 VASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPT 659
V + W+GIPV ++ E L+ +E+ L KRVIGQDEA+ AIS AV+R+R GLKDP RP
Sbjct: 481 VVANWTGIPVVRLEQKESERLLHMEDILHKRVIGQDEAIRAISHAVRRARAGLKDPKRPI 540
Query: 660 AAMLFCGPTGVGKTELAKSLAACYFG 685
+ +F GPTGVGKTELA+++A FG
Sbjct: 541 GSFIFLGPTGVGKTELARAVAETLFG 566
>gi|427414117|ref|ZP_18904307.1| hypothetical protein HMPREF9282_01714 [Veillonella ratti
ACS-216-V-Col6b]
gi|425714493|gb|EKU77496.1| hypothetical protein HMPREF9282_01714 [Veillonella ratti
ACS-216-V-Col6b]
Length = 816
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 273/612 (44%), Positives = 376/612 (61%), Gaps = 53/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+FERFT+ A +A+ +Q ++K G D V T+HLLLGL+ ED + L S G+ + +
Sbjct: 1 MFERFTDGAQRALGIAQEKSKEFGHDYVGTEHLLLGLLEEDSVASKALHSLGLEDEVTEK 60
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
AV+ DA +G S+ ++ + TKRV + AV + +N++ EH+
Sbjct: 61 AVL------------DAVGRGNSHSN--ELYITPRTKRVLQLAVGIANQMQHNYVGAEHL 106
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LG+ DG A VL +G+ N + A++ + G +G E + +G
Sbjct: 107 LLGILQDGDGVAVNVLYSMGIRSNDVVK-AINNIYGS----------EQGGAEGAGNGSG 155
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+A G + L+ F DL A + IDPVIGR+ EI R+IQIL RRTKNNP+L+GE
Sbjct: 156 SA---NGSSNLGDLKDFATDLNEVAKQGKIDPVIGRDNEINRVIQILSRRTKNNPVLIGE 212
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA RIV VP L +KRI+SL + ++AGAK RGE E R+ I E+Q
Sbjct: 213 PGVGKTAIAEGLAQRIVSQNVPEILRNKRIISLSLTAMVAGAKYRGEFEERLKKAIDEVQ 272
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
K D+I+FIDE+HTLIG+G ++G+ +D +N+LKP+L RG Q I +TT DE++
Sbjct: 273 KHDDMIIFIDELHTLIGAGA----SEGS-MDAANILKPALARGTFQVIGATTLDEYKKHI 327
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPVL+ EPS+E+A+ IL GLR++YEA H K T EA+ AAV LS+RYISD
Sbjct: 328 EKDAALERRFQPVLVGEPSEEEALEILKGLRDRYEAFHKAKITDEALKAAVELSSRYISD 387
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHE---VVQG 556
R+LPDKAID++DEA S+ +++F + PPD E R E V G
Sbjct: 388 RFLPDKAIDVMDEAASKVRMKVF-----------TAPPDVKDLETRLADVRKEKEAAVTG 436
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPSAS---DDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
Y++ + ++V E A+ +D+E VV DDIAAV S WSG+PV +I
Sbjct: 437 Q--NYEEAAKLRDEEKKLVDEIEAKQAARSKEDEEKLVVTEDDIAAVVSQWSGVPVAKIA 494
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ LE++L +RV+GQDEAV A+S+AV+R+R GLKDP RP + LF GPTGVGKT
Sbjct: 495 EEESERLLRLEDELHERVVGQDEAVVAVSKAVRRARAGLKDPKRPIGSFLFLGPTGVGKT 554
Query: 674 ELAKSLAACYFG 685
ELA++LAA FG
Sbjct: 555 ELARALAANLFG 566
>gi|430748562|ref|YP_007211470.1| chaperone ATPase [Thermobacillus composti KWC4]
gi|430732527|gb|AGA56472.1| ATPase with chaperone activity, ATP-binding subunit [Thermobacillus
composti KWC4]
Length = 818
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/612 (42%), Positives = 370/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E G+ ++K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALTALGLGLEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ A + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 DEVESLI--------------GRGQEQPANIAYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N A V +L G S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLNK-ARQQVLQLLG------------------SSEAI 148
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+++ +P L+ DLTA A + +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 149 SSSHGAPTNVNTPTLDGLARDLTAAARDGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV E+P L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQRIVANEIPETLRDKRVMTLDMGSVVAGTKYRGEFEDRLKKIMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+++ +P+ E+A++IL GLR++YEAHH K T EAI AAV LS RYI+
Sbjct: 324 IEKDAALERRFQPIMVEQPTPEEAIQILHGLRDRYEAHHRVKITDEAIEAAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + + + PP+ E R + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLHSY-----------TVPPNLKQLEARLEEIRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVES-----SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ DT + + E ++ + V P+DIA V S W+GIPV ++
Sbjct: 433 SQEFEKAAALRDTEQKIREELETTKNMWKEKQGRTDSEVTPEDIAQVVSSWTGIPVSKLK 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE L RVIGQDEAV A++RA++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 EEETERLLKMEEILHSRVIGQDEAVKAVARAIRRARAGLKDPKRPMGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|407797861|ref|ZP_11144776.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Salimicrobium
sp. MJ3]
gi|407017624|gb|EKE30381.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Salimicrobium
sp. MJ3]
Length = 821
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 260/610 (42%), Positives = 371/610 (60%), Gaps = 42/610 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA LG + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAVRLGHSNIGTEHVLLGLVKEG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ T+ G + + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LTALGLEAETIQTEVENLIGAGEQKSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G E +G + + + +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGN--NESTGGQGRRGGNQGGGAAQGS 166
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT+ A E +DPVIGR EIQR+IQ+L RRTKNNP+L+GE
Sbjct: 167 GQTTP------TLDSLAQDLTSIAKEGNVDPVIGRSEEIQRVIQVLSRRTKNNPVLVGEP 220
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTA+AEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 221 GVGKTAVAEGLAQQIVENEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMEEIRQ 280
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RG+LQCI +TT DE+R E
Sbjct: 281 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGDLQCIGATTLDEYRKYIE 335
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E++ +IL GLR++YEAHH T EAI +AV S RYI+DR
Sbjct: 336 KDAALERRFQPIQVDEPTTEESTQILQGLRDRYEAHHRVTITDEAIESAVRFSDRYITDR 395
Query: 501 YLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
+LPDKAIDL+DEA S+ + + ++ EQ+ + K D Q E +
Sbjct: 396 FLPDKAIDLIDEAASKVRLRSYTAPPNLKELEQKLEEVRKEKDAAVQS-------QEFEK 448
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ L+ DD + E + +D E V +DIA++ SLW+G+PV+++T +
Sbjct: 449 AASLR-DDEQKLREELEETQKKWKEKQGQEDSEVTV---EDIASIVSLWTGVPVKKMTTE 504
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE+ L RVIGQ+EAV ++++A++R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 505 ESEQLLHLEDTLHNRVIGQEEAVDSVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 564
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 565 ARALAESMFG 574
>gi|269798082|ref|YP_003311982.1| ATPase AAA [Veillonella parvula DSM 2008]
gi|269094711|gb|ACZ24702.1| ATPase AAA-2 domain protein [Veillonella parvula DSM 2008]
Length = 815
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 260/618 (42%), Positives = 363/618 (58%), Gaps = 67/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGL--IAEDRHPNGFLESGITIDKAR 138
+ +RFT+ A + + +Q A LG D V T+H+L+GL + E G+ +
Sbjct: 1 MMQRFTDDAQRVLSLAQEAALELGHDYVGTEHVLIGLTKVKNGVAAKALEELGLVTEDIF 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
EAV G+ A + + K V E A++ + +N++ EH
Sbjct: 61 EAV--------------EEHVGRGNKKATSIYMTPRVKHVLELAIQVANHMNHNYVGTEH 106
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL + G A +L+ + + N + A+ + G + +G +G+ N+ G+
Sbjct: 107 ILLGLLSDGSGVAVAILRAMNIRSNDVVE-AIRSILG--SNKGSNNGGQEGINSNNDLGE 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L F DL A + IDPVIGR+TEIQR+IQIL RRTKNNP+L+G
Sbjct: 164 --------------LSDFATDLNESAKQGKIDPVIGRDTEIQRVIQILSRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV VP L +KRI+SL +G ++AGAK RGE E R+ I E+
Sbjct: 210 EPGVGKTAIAEGLAQRIVTGNVPEILRNKRIISLSIGSMLAGAKYRGEFEERLKKAIDEV 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
Q+ D+I+FIDE+HTL+G+G +D +N+LKP+L RGE Q I +TT DE++
Sbjct: 270 QQHDDMIIFIDEIHTLVGAGAT-----EGAMDAANILKPALARGEFQVIGATTLDEYKKH 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP++EDA+ IL GLR++YEA H K T EA+ AAV LS+RYI+
Sbjct: 325 IEKDAALERRFQPVQVGEPNEEDALEILKGLRDRYEAFHKAKITDEALTAAVSLSSRYIT 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR--TVQAMHEVV-- 554
DR+LPDKAID+VDEA S+ +++F S PD E R TV+ E
Sbjct: 385 DRFLPDKAIDVVDEAASKVRMKVF-----------SAAPDVKALEDRLNTVKKEKEAAVT 433
Query: 555 -----QGSRLKYDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
+ ++L+ ++ +V +GD I E S D+ +V +DIAAV + W+GI
Sbjct: 434 SQDFEKAAKLRDEEQSLVKEIGDKKSIAKEKS-------DQKLIVTEEDIAAVVAQWTGI 486
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV +I +E L+ LEE+L KRV+GQDEAV A+++AV+R+R GLKDP RP + LF GP
Sbjct: 487 PVAKIAEEESATLLHLEEELHKRVVGQDEAVTAVAKAVRRARAGLKDPKRPIGSFLFLGP 546
Query: 668 TGVGKTELAKSLAACYFG 685
TGVGKTELA++LA+ FG
Sbjct: 547 TGVGKTELARALASSLFG 564
>gi|282850309|ref|ZP_06259688.1| negative regulator of genetic competence ClpC/MecB [Veillonella
parvula ATCC 17745]
gi|282579802|gb|EFB85206.1| negative regulator of genetic competence ClpC/MecB [Veillonella
parvula ATCC 17745]
Length = 815
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 262/618 (42%), Positives = 366/618 (59%), Gaps = 67/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGL--IAEDRHPNGFLESGITIDKAR 138
+ +RFT+ A + + +Q A LG D V T+H+L+GL + E G+ +
Sbjct: 1 MMQRFTDDAQRVLSLAQEAALELGHDYVGTEHVLIGLTKVKNGVAAKALEELGLVTEDIF 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
EAV G+ A + + K V E A++ + +N++ EH
Sbjct: 61 EAV--------------EEHVGRGNKKATSIYMTPRVKHVLELAIQVANHMNHNYVGTEH 106
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL + G A +L+ + + N + A+ + G + +G +G+ N+ G+
Sbjct: 107 ILLGLLSDGSGVAVAILRSMNIRSNDVVE-AIRSILG--SNKGSNNGGQEGINSNNDLGE 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L F DL A + IDPVIGR+TEIQR+IQIL RRTKNNP+L+G
Sbjct: 164 --------------LSDFATDLNESAKQGKIDPVIGRDTEIQRVIQILSRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV VP L +KRI+SL +G L+AGAK RGE E R+ I E+
Sbjct: 210 EPGVGKTAIAEGLAQRIVTDNVPEILRNKRIISLSIGSLLAGAKYRGEFEERLKKAIDEV 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
Q+ D+I+FIDE+HTL+G+G +GT +D +N+LKP+L RGE Q I +TT DE++
Sbjct: 270 QQHDDMIIFIDEIHTLVGAG----ATEGT-MDAANILKPALARGEFQVIGATTLDEYKKY 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP++EDA+ IL GLR++YEA H K T EA+ AAV LS+RYI+
Sbjct: 325 IEKDAALERRFQPVQVGEPNEEDALEILKGLRDRYEAFHKAKITDEALTAAVSLSSRYIT 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR--TVQAMHEVV-- 554
DR+LPDKAID+VDEA S+ +++F S PD E R TV+ E
Sbjct: 385 DRFLPDKAIDVVDEAASKVRMKVF-----------SAAPDVKALEDRLNTVKKEKEAAVT 433
Query: 555 -----QGSRLKYDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
+ ++L+ ++ ++ +GD I E S D+ +V +DIAAV + W+GI
Sbjct: 434 SQDFEKAAKLRDEEQSLLKEIGDKKSIAKEKS-------DQKLIVTEEDIAAVVAQWTGI 486
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV +I +E L+ LEE+L KRV+GQDEAV A+++AV+R+R GLKDP RP + LF GP
Sbjct: 487 PVVKIAEEESATLLHLEEELHKRVVGQDEAVTAVAKAVRRARAGLKDPKRPIGSFLFLGP 546
Query: 668 TGVGKTELAKSLAACYFG 685
TGVGKTELA++LA+ FG
Sbjct: 547 TGVGKTELARALASSLFG 564
>gi|294791953|ref|ZP_06757101.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
6_1_27]
gi|294457183|gb|EFG25545.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
6_1_27]
Length = 815
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 260/618 (42%), Positives = 363/618 (58%), Gaps = 67/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGL--IAEDRHPNGFLESGITIDKAR 138
+ +RFT+ A + + +Q A LG D V T+H+L+GL + E G+ +
Sbjct: 1 MMQRFTDDAQRVLSLAQEAALELGHDYVGTEHVLIGLTKVKNGVAAKALEELGLVTEDIF 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
EAV G+ A + + K V E A++ + +N++ EH
Sbjct: 61 EAV--------------EEHVGRGNKKATSIYMTPRVKHVLELAIQVANHMNHNYVGTEH 106
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL + G A +L+ + + N + A+ + G + +G +G+ N+ G+
Sbjct: 107 ILLGLLSDGSGVAVAILRAMNIRSNDVVE-AIRSILG--SNKGSNNGGQEGINSNNDLGE 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L F DL A + IDPVIGR+TEIQR+IQIL RRTKNNP+L+G
Sbjct: 164 --------------LSDFATDLNESAKQGKIDPVIGRDTEIQRVIQILSRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV VP L +KRI+SL +G ++AGAK RGE E R+ I E+
Sbjct: 210 EPGVGKTAIAEGLAQRIVTGNVPEILRNKRIISLSIGSMLAGAKYRGEFEERLKKAIDEV 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
Q+ D+I+FIDE+HTL+G+G +D +N+LKP+L RGE Q I +TT DE++
Sbjct: 270 QQHDDMIIFIDEIHTLVGAGAT-----EGAMDAANILKPALARGEFQVIGATTLDEYKKH 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP++EDA+ IL GLR++YEA H K T EA+ AAV LS+RYI+
Sbjct: 325 IEKDAALERRFQPVQVGEPNEEDALEILKGLRDRYEAFHKAKITDEALTAAVSLSSRYIT 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR--TVQAMHEVV-- 554
DR+LPDKAID+VDEA S+ +++F S PD E R TV+ E
Sbjct: 385 DRFLPDKAIDVVDEAASKVRMKVF-----------SAAPDVKALEDRLNTVKKEKEAAVT 433
Query: 555 -----QGSRLKYDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
+ ++L+ ++ +V +GD I E S D+ +V +DIAAV + W+GI
Sbjct: 434 SQDFEKAAKLRDEEQSLVKEIGDKKSIAKEKS-------DQKLIVTEEDIAAVVAQWTGI 486
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV +I +E L+ LEE+L KRV+GQDEAV A+++AV+R+R GLKDP RP + LF GP
Sbjct: 487 PVAKIAEEESATLLHLEEELHKRVVGQDEAVTAVAKAVRRARAGLKDPKRPIGSFLFLGP 546
Query: 668 TGVGKTELAKSLAACYFG 685
TGVGKTELA++LA+ FG
Sbjct: 547 TGVGKTELARALASSLFG 564
>gi|224119922|ref|XP_002318196.1| predicted protein [Populus trichocarpa]
gi|222858869|gb|EEE96416.1| predicted protein [Populus trichocarpa]
Length = 422
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/263 (82%), Positives = 237/263 (90%)
Query: 424 LQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTL 483
LQCIASTT DE+RT FE DKALARRFQPVLI+EPSQEDA+RILLGLR++YEAHHNC+FT
Sbjct: 4 LQCIASTTLDEYRTHFEIDKALARRFQPVLINEPSQEDAIRILLGLRQRYEAHHNCRFTP 63
Query: 484 EAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQE 543
EAINAAVHLSARYI+DRYLPDKAIDL+DEAGSRA IE ++RKKEQQT ILSK PDDYWQE
Sbjct: 64 EAINAAVHLSARYIADRYLPDKAIDLIDEAGSRARIEAYRRKKEQQTFILSKTPDDYWQE 123
Query: 544 IRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
IRTVQAMHEVV SRL D ++SM + EI +ESSLP AS+ DEPAVVGPDDIAAVASL
Sbjct: 124 IRTVQAMHEVVLASRLANDCSLSSMDGSGEITIESSLPPASNADEPAVVGPDDIAAVASL 183
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
WSGIPVQQ+TADER LVGLEE+L+KRVIGQDEAVAAISRAVKRSRVGLKDP+RP AAML
Sbjct: 184 WSGIPVQQLTADERKFLVGLEEELRKRVIGQDEAVAAISRAVKRSRVGLKDPDRPIAAML 243
Query: 664 FCGPTGVGKTELAKSLAACYFGS 686
FCGPTGVGKTEL K+LA YFGS
Sbjct: 244 FCGPTGVGKTELTKALARNYFGS 266
>gi|323357510|ref|YP_004223906.1| ATPase with chaperone activity, ATP-binding subunit [Microbacterium
testaceum StLB037]
gi|323273881|dbj|BAJ74026.1| ATPase with chaperone activity, ATP-binding subunit [Microbacterium
testaceum StLB037]
Length = 841
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 266/614 (43%), Positives = 378/614 (61%), Gaps = 52/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEAKMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I Q T +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQDIIGQGQQQPT-------------GHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS-LAKGVRENSISG 257
I LGL +G A +VL +LG D+N + + L G +G+EP+ +A G E S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNKVRQQVIQLLSG---YQGKEPAGVASGAGEQS--- 161
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ + ++ L+QF +LT A + +DPVIGRE EI+R++QIL RR+KNNP+L+
Sbjct: 162 -----QGAAQGGSAVLDQFGRNLTQAARDNKLDPVIGREKEIERVMQILSRRSKNNPVLI 216
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ +VP L K++ SLD+G L+AG++ RG+ E R+ + E
Sbjct: 217 GEPGVGKTAVVEGLAQAIVKGDVPETLKDKQVYSLDLGSLIAGSRYRGDFEERLKKVTKE 276
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+I+FIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 IRTRGDIIVFIDEIHTLVGAGAA----EGA-IDAASILKPLLARGELQTIGATTLDEYRK 331
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
FEKD AL RRFQP+ ++EPS A+ IL GLR++YEAHH + T AI AA +L+ RYI
Sbjct: 332 HFEKDAALERRFQPIQVAEPSLPHAINILKGLRDRYEAHHKVQITDGAIVAAANLADRYI 391
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
SDR+LPDKAIDL+DEAG+R + ILS PP+ ++ ++I V+ E Q
Sbjct: 392 SDRFLPDKAIDLIDEAGARLRL-----------SILSSPPELREFDEKIAKVREQKE--Q 438
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
S + + AS+ D + ++ L + D AVV IA V + +GIPV
Sbjct: 439 ASEEQDFEKAASLRDEEKSLLAERLRLEKQWRSGDVASHAVVDEGLIAEVLAQATGIPVF 498
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L+ +E+ L +RVIGQ+EA+AA+SR ++R R GLKDP RP+ + +F GPTGV
Sbjct: 499 KLTEEESSRLMFMEKTLHQRVIGQEEAIAALSRTIRRQRAGLKDPKRPSGSFIFAGPTGV 558
Query: 671 GKTELAKSLAACYF 684
GKTELAK+LA F
Sbjct: 559 GKTELAKALAEFLF 572
>gi|407475965|ref|YP_006789842.1| class III stress response-related ATPase [Exiguobacterium
antarcticum B7]
gi|407060044|gb|AFS69234.1| class III stress response-related ATPase [Exiguobacterium
antarcticum B7]
Length = 815
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/619 (42%), Positives = 374/619 (60%), Gaps = 70/619 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA + + +Q EA LG + T+H+LLGL+ R +G A +A
Sbjct: 2 MFGRFTERAQRVLALAQEEAVRLGHHNIGTEHILLGLV---REGDGI---------AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ S++ + A G+ A + ++ K+V E +++ +R G++++ EH+
Sbjct: 50 LTALGLSSDKIQMEVEALIGRGQDGATTIHYTPRAKKVIELSMDEARKLGHSYVGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LG+ ++ A V +L G NS + A
Sbjct: 110 LGLIREGEGVAARVLNNLGISLSK-ARQQVLQLLG-----------------NSETTANA 151
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ G L+ DLT +A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 152 SQAGSG-VATPTLDGLARDLTQQARETRLDPVIGRAKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTA+ EGLA +IV EVP L +KR+M LDMG L+AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAVVEGLAQQIVNNEVPETLRNKRVMVLDMGTLVAGTKYRGEFEDRLKKVMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQC+ +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCVGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ ++EP+ ++A +IL GLR++YEAHH T EAI+ AV LS RYISDR
Sbjct: 326 KDAALERRFQPIQVAEPTTDEATQILFGLRDRYEAHHRVTITDEAIHEAVTLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDLVDEA S+ + + + PP+ ++ V+A ++G R
Sbjct: 386 FLPDKAIDLVDEAASKVRLRSY-----------TAPPN-----LKEVEAK---LEGIRKD 426
Query: 561 YDDVV--------ASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSG 606
D+ V AS+ DT E + L ++ +E V DDIA V + W+G
Sbjct: 427 KDEAVQSQEFEKAASLRDT-EQKLRDELERLKEEWQNKQGNEKLEVTKDDIAQVVANWTG 485
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV +I +E L+ LEE L RVIGQ+EAV +IS+A++R+R GLKDP RP + +F G
Sbjct: 486 VPVTKIAEEETDRLLRLEEILHGRVIGQNEAVKSISKAIRRARAGLKDPKRPIGSFIFLG 545
Query: 667 PTGVGKTELAKSLAACYFG 685
PTGVGKTELA+++A FG
Sbjct: 546 PTGVGKTELARAVAEAMFG 564
>gi|126697592|ref|YP_001086489.1| class III stress response-related ATPase [Clostridium difficile
630]
gi|254973677|ref|ZP_05270149.1| ATP-dependent Clp protease [Clostridium difficile QCD-66c26]
gi|255091069|ref|ZP_05320547.1| ATP-dependent Clp protease [Clostridium difficile CIP 107932]
gi|255099184|ref|ZP_05328161.1| ATP-dependent Clp protease [Clostridium difficile QCD-63q42]
gi|255304967|ref|ZP_05349139.1| ATP-dependent Clp protease [Clostridium difficile ATCC 43255]
gi|255312722|ref|ZP_05354305.1| ATP-dependent Clp protease [Clostridium difficile QCD-76w55]
gi|255515482|ref|ZP_05383158.1| ATP-dependent Clp protease [Clostridium difficile QCD-97b34]
gi|255648575|ref|ZP_05395477.1| ATP-dependent Clp protease [Clostridium difficile QCD-37x79]
gi|306518705|ref|ZP_07405052.1| ATP-dependent Clp protease [Clostridium difficile QCD-32g58]
gi|384359346|ref|YP_006197198.1| ATP-dependent Clp protease [Clostridium difficile BI1]
gi|423080678|ref|ZP_17069297.1| negative regulator of genetic competence ClpC/MecB [Clostridium
difficile 002-P50-2011]
gi|423085125|ref|ZP_17073582.1| negative regulator of genetic competence ClpC/MecB [Clostridium
difficile 050-P50-2011]
gi|423089367|ref|ZP_17077727.1| negative regulator of genetic competence ClpC/MecB [Clostridium
difficile 70-100-2010]
gi|115249029|emb|CAJ66840.1| class III stress response-related ATPase, AAA+ superfamily
[Clostridium difficile 630]
gi|357550773|gb|EHJ32582.1| negative regulator of genetic competence ClpC/MecB [Clostridium
difficile 050-P50-2011]
gi|357552742|gb|EHJ34509.1| negative regulator of genetic competence ClpC/MecB [Clostridium
difficile 002-P50-2011]
gi|357558303|gb|EHJ39802.1| negative regulator of genetic competence ClpC/MecB [Clostridium
difficile 70-100-2010]
Length = 815
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/614 (42%), Positives = 371/614 (60%), Gaps = 57/614 (9%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
F RFT+RA KA+ + AKSLG ++V ++H+LLGL+ E E GI A + +
Sbjct: 3 FNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLRE--------EEGI----AAKVL 50
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ + + +GK + + S +K++ E + ++ N+I EHI L
Sbjct: 51 SKVGFTEAYLEGKIVDMEGKGEEISEDIVLSPRSKQILELSGMFANKLKTNYIGTEHILL 110
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
+ +G A ++L GV+ LA + + + ++ + + + ENS +G
Sbjct: 111 AIIQEGEGIANKILNYAGVNDRTLAQLTIDMMG--ISDKNQYKA------ENSYTG---- 158
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
+ + + L+++ +LT A + IDPVIGRE EIQR+IQIL RRTKNNP+L+G+ G
Sbjct: 159 --NQNQAESKVLDKYGRNLTLYAKQNKIDPVIGREKEIQRVIQILSRRTKNNPVLIGDPG 216
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA I VP L +K + SL+MG L+AGAK RGE E R+ ++ E+ K+
Sbjct: 217 VGKTAIAEGLATNIALGNVPETLKNKTLYSLEMGSLLAGAKYRGEFEERIKEVVDEVVKN 276
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G++ILFIDE+HT+IG+G+ G G+ +D SN+LKP+L RGE+Q I +TT DE+R EK
Sbjct: 277 GNIILFIDEMHTIIGAGSTGEGS----IDASNILKPALARGEIQVIGATTIDEYRKHVEK 332
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQPV++ EP++ED+++IL GLR+KYEAHH K T +AI AAV LS RYISDRY
Sbjct: 333 DSALERRFQPVMVDEPTKEDSIKILEGLRDKYEAHHKVKITDDAIKAAVELSTRYISDRY 392
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQ---EIRTVQAMHEVVQGSR 558
LPDKAIDL+DEA S+ R KE + PP + + EI + E + R
Sbjct: 393 LPDKAIDLIDEAASKV------RLKE------NTPPSEIKKLELEIENIDKEKE--EAVR 438
Query: 559 LKYDDVVASMGDTS-------EIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + A + D E V E S+ D +V + IA V LW+GIPV +
Sbjct: 439 CQDFEKAAKIRDEQGLLKKQLEDVRERWNKSSKHSD---LVDGEVIAEVVGLWTGIPVNK 495
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
I +E L+ LEE L RVIGQ++AV +IS+A++RSR GLKDPNRP + LF GPTGVG
Sbjct: 496 ILEEEADRLLRLEEILHNRVIGQEQAVKSISKAIRRSRAGLKDPNRPIGSFLFLGPTGVG 555
Query: 672 KTELAKSLAACYFG 685
KTEL+K+LA FG
Sbjct: 556 KTELSKALAEVQFG 569
>gi|172056112|ref|YP_001812572.1| ATPase [Exiguobacterium sibiricum 255-15]
gi|171988633|gb|ACB59555.1| ATPase AAA-2 domain protein [Exiguobacterium sibiricum 255-15]
Length = 815
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/619 (42%), Positives = 373/619 (60%), Gaps = 70/619 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA + + +Q EA LG + T+H+LLGL+ R +G A +A
Sbjct: 2 MFGRFTERAQRVLALAQEEAVRLGHHNIGTEHILLGLV---REGDGI---------AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ S++ + A G+ A + ++ K+V E +++ +R G++++ EH+
Sbjct: 50 LTALGLSSDKIQMEVEALIGRGQDGATTIHYTPRAKKVIELSMDEARKLGHSYVGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LG+ ++ A V +L G NS + A
Sbjct: 110 LGLIREGEGVAARVLNNLGISLSK-ARQQVLQLLG-----------------NSETTANA 151
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ G L+ DLT +A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 152 SQAGSG-VATPTLDGLARDLTQQARETRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTA+ EGLA +I+ EVP L +KR+M LDMG L+AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAVVEGLAQQIINNEVPETLRNKRVMVLDMGTLVAGTKYRGEFEDRLKKVMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ ++EP+ ++A +IL GLR++YEAHH T EAI AV LS RYISDR
Sbjct: 326 KDAALERRFQPIQVAEPTTDEATQILFGLRDRYEAHHRVTITDEAIQEAVTLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ ++ V+A ++G R
Sbjct: 386 FLPDKAIDLIDEAASKVRLRSY-----------TAPPN-----LKEVEAK---LEGIRKD 426
Query: 561 YDDVV--------ASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSG 606
D+ V AS+ DT E + L ++ +E V DDIA V + W+G
Sbjct: 427 KDEAVQSQEFEKAASLRDT-EQKLRDELERLKEEWQNKQGNEKLEVTKDDIAQVVANWTG 485
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV +I +E L+ LEE L RVIGQ+EAV +IS+A++R+R GLKDP RP + +F G
Sbjct: 486 VPVTKIAEEETDRLLRLEEILHGRVIGQNEAVKSISKAIRRARAGLKDPKRPIGSFIFLG 545
Query: 667 PTGVGKTELAKSLAACYFG 685
PTGVGKTELA+++A FG
Sbjct: 546 PTGVGKTELARAVAEAMFG 564
>gi|229917386|ref|YP_002886032.1| ATPase AAA [Exiguobacterium sp. AT1b]
gi|229468815|gb|ACQ70587.1| ATPase AAA-2 domain protein [Exiguobacterium sp. AT1b]
Length = 811
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/613 (43%), Positives = 369/613 (60%), Gaps = 58/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA + + +Q EA LG + T+H+LLGL+ E G+T +K +
Sbjct: 2 MFGRFTERAQRVLALAQEEAVRLGHHNIGTEHILLGLVREGEGIAAKALFALGLTSEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ + + + ++ K+V E +++ +R G++++ EH
Sbjct: 62 QEVESLI--------------GRGSENGSTIHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ + A V +L G N+ S
Sbjct: 108 ILLGLIREGEGVAARVLNNLGISLTK-ARQQVLQLLG-----------------NTESSS 149
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A+ PG + A+ L+ DLT +A E +DPVIGR EIQR+I++L RRTKNNP+L+
Sbjct: 150 NAS--QPGASAATPTLDGLARDLTQQARESRLDPVIGRAGEIQRVIEVLSRRTKNNPVLI 207
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA +I+ EVP L +KR+M LDMG L+AG K RGE E R+ ++ E
Sbjct: 208 GEPGVGKTAVVEGLAQQIINNEVPETLRNKRVMVLDMGTLVAGTKYRGEFEDRLKKVMDE 267
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++G+VILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 268 IRQAGNVILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRK 322
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ ++EP+ E+A +ILLGLR++YEAHH T AI+ AV LS RYI
Sbjct: 323 YIEKDAALERRFQPIQVNEPTTEEAEQILLGLRDRYEAHHRVTITDTAIHEAVVLSDRYI 382
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
SDR+LPDKAIDLVDEA S+ + F + PP+ E R E
Sbjct: 383 SDRFLPDKAIDLVDEAASKVRLRSF-----------TAPPNLKELESRLESIRKEKDSAV 431
Query: 558 RLKYDDVVASMGDTSEIVVE--SSLPSASDD---DEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + + AS+ DT + + + L + + +E V +DIA V + W+G+PV +I
Sbjct: 432 QSQEFEKAASLRDTEQKLRDELEELKAEWQNKQGNEKLEVTKEDIAQVVANWTGVPVTKI 491
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ LE L RVIGQD+AV +ISRA++R+R GLKDP RP + +F GPTGVGK
Sbjct: 492 AEEETDRLLKLESILHNRVIGQDDAVKSISRAIRRARAGLKDPKRPIGSFIFLGPTGVGK 551
Query: 673 TELAKSLAACYFG 685
TELA+++A FG
Sbjct: 552 TELARAVAEAMFG 564
>gi|184201561|ref|YP_001855768.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Kocuria
rhizophila DC2201]
gi|183581791|dbj|BAG30262.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Kocuria
rhizophila DC2201]
Length = 872
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/617 (42%), Positives = 378/617 (61%), Gaps = 54/617 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI E LES G+T+ AR
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHLLLGLIHEGEGVAAKALESMGVTLSAAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I Q P + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQDII----------GPGQQAP---SGHIPFTPRAKKVLEHSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LG+ +G A +VL +LG D + A + + G + A G E +G
Sbjct: 108 ILLGIIRAGEGVASQVLVKLGADPAKVRATVLELISG------YQSGNAGG--EKEAAGV 159
Query: 259 TAALKSPGRTRASA-LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ ++ G SA L+QF +LTA A E +DPVIGR E++R++Q+L RRTKNNP+L+
Sbjct: 160 GSGGRAEGTPAGSAVLDQFGRNLTAAARESKLDPVIGRYREMERVMQVLSRRTKNNPVLI 219
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ +VP L K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 220 GEPGVGKTAVVEGLAQAIVRGDVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKE 279
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 280 IRTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRK 334
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS+ AV IL GLR+KYEAHH + EA+ +AV +SARY+
Sbjct: 335 HIEKDAALERRFQPIQVDEPSEAHAVEILKGLRDKYEAHHRVSISDEALESAVSMSARYV 394
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAMHE 552
SDR+LPDKAIDL+DEAG+R I KR ++ PP D+ E +T A
Sbjct: 395 SDRFLPDKAIDLIDEAGARLRI---KR--------MTAPPEIKALDEKIAETKT--AKEA 441
Query: 553 VVQGSRLKYDDVVASMGDTSEIVV----ESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ G + AS+ DT + ++ E DD+ + V P+ I+ V S +G+P
Sbjct: 442 AIDGQDYEK---AASLRDTEQKLIAERDEKDKAWREGDDQISEVTPEVISDVLSASTGVP 498
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V +++ +E L+ +E++L KRVIGQ+EA+ A+SR+++R+R GLKDP RP + +F GPT
Sbjct: 499 VYKLSEEESGRLLHMEDELHKRVIGQNEAIKALSRSIRRTRAGLKDPRRPGGSFIFAGPT 558
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTELAK+LA FG
Sbjct: 559 GVGKTELAKALAEFLFG 575
>gi|56961903|ref|YP_173625.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
clausii KSM-K16]
gi|56908137|dbj|BAD62664.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
clausii KSM-K16]
Length = 818
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/612 (43%), Positives = 369/612 (60%), Gaps = 50/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + SQ EA L + T+H+LLGLI E + G+ +K +
Sbjct: 2 IFGRFTERAQKVLALSQEEAIRLSHHNIGTEHILLGLIREGEGIAAKALQQLGLGSEKLQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ Q S + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVETLV----------GKGQEGQKSIHSTPHYTPRAKKVIELSMDEARKLGHSYVGTEH 111
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G + EG S + G N+
Sbjct: 112 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG--SNEGGSSSQSNGAATNA---- 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P L+ DLTA A EE +DPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 165 ----NTP------TLDSLARDLTAIAREETLDPVIGRSREIERVIQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA IV EVP L +KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 215 EPGVGKTAIAEGLAQSIVANEVPETLRNKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 275 RQAGNVILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ +++++IL GLR++YEAHH T EA+ AV LS RYIS
Sbjct: 330 IEKDAALERRFQPIQVDEPTIDESIQILYGLRDRYEAHHRVTITDEAVEEAVKLSDRYIS 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + + + PP+ E + + E +
Sbjct: 390 DRFLPDKAIDLIDEAASKVRLRSY-----------TAPPNLKELEAKLEETRKEKDASVQ 438
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + E ++ E V +DIA V S W+GIPV ++
Sbjct: 439 SQEFEKAASLRDTEQRLREELEEMKNEWKKKQGQENTEVLVEDIAQVVSSWTGIPVSKLA 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE L +RV+GQ+EAV +IS+A++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 499 EEETERLLKMEEILHERVVGQEEAVKSISKAIRRARAGLKDPKRPIGSFIFLGPTGVGKT 558
Query: 674 ELAKSLAACYFG 685
ELA+++A FG
Sbjct: 559 ELARAVAETLFG 570
>gi|412985529|emb|CCO18975.1| predicted protein [Bathycoccus prasinos]
Length = 944
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 269/622 (43%), Positives = 377/622 (60%), Gaps = 59/622 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKA 137
++FERFTE+A+K V+ +Q EA+ LG + V T+ ++LGLI E L+S GI++ +A
Sbjct: 105 AMFERFTEKAIKVVMLAQEEARRLGHNFVGTEQIMLGLIGEGTGIAAKVLKSMGISLKEA 164
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E A+E +R G+N+I E
Sbjct: 165 RVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELALEEARQLGHNYIGTE 211
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ L D + + V R+ GE +E +G
Sbjct: 212 HLLLGLLREGEGVAARVLENLDADPAKIRS-QVIRMVGE-------------SQEAVGAG 257
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A + ++ LE+F DLT +A E +DP +GR EI+R+ QIL RRTKNNP L+
Sbjct: 258 AGATGGAASGSKTPTLEEFGSDLTKQAEEAKLDPCVGRTNEIRRVTQILGRRTKNNPCLV 317
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGK+AIAEGLA +I VP L KR+M+LDMGLL+AG K RGE E R+ L+ E
Sbjct: 318 GEPGVGKSAIAEGLAQQIASGTVPETLEGKRMMTLDMGLLVAGTKYRGEFEERLKKLMDE 377
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+++ +ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 378 VKQDDAIILFIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTIDEYRK 432
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EP+ ++ + IL GLRE+YE HH K+T EA+ A S++YI
Sbjct: 433 HIEKDPALERRFQPVQVPEPTVDETIEILKGLRERYEVHHKLKYTDEALECAAKFSSQYI 492
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
SDR+LPDKAIDL+DEAGSR +E T I P++ + + ++A+ + +
Sbjct: 493 SDRFLPDKAIDLIDEAGSRVRLE--------HTSI----PEEAKELDKELKALQKEKDTA 540
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAV---------VGP----DDIAAVASLW 604
D A E+ ++S + + ++ + GP DIA V + W
Sbjct: 541 IRGQDFEAAGSIRDKEVELKSQIKAITEKKQEEAKAEIESGKETGPTVTEQDIADVVAAW 600
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+GIPV ++ +DE L+G+EE+L +R+IGQ+EA+ A SRA++R+R GLK PNRP A+ +F
Sbjct: 601 TGIPVDKVASDEAQRLMGMEEKLHERLIGQEEAIVACSRAIRRARTGLKSPNRPVASFIF 660
Query: 665 CGPTGVGKTELAKSLAACYFGS 686
GPTGVGK+ELAKSL+ YFGS
Sbjct: 661 AGPTGVGKSELAKSLSQFYFGS 682
>gi|218437024|ref|YP_002375353.1| ATPase AAA [Cyanothece sp. PCC 7424]
gi|218169752|gb|ACK68485.1| ATPase AAA-2 domain protein [Cyanothece sp. PCC 7424]
Length = 792
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 263/629 (41%), Positives = 383/629 (60%), Gaps = 79/629 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FE F+++AVKA++F+Q EA+ G ++V T+HLLLG+I E+ + + GI + + R
Sbjct: 1 MFEHFSDKAVKAIMFAQEEARRTGHNVVGTEHLLLGVIGEETSLAASVLRDLGINLPQTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ +D +G P S A +PF+ KR+FE A + +R G I P H
Sbjct: 61 RII------------EDMTGRG-PGYSPANIPFTPKVKRIFEGAFQEARQLGDRVITPVH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ L + T + AG++L + GVD+ +L+ EL + E S A + +
Sbjct: 108 LLLAITTEKESLAGKILTQQGVDLK--------KLRTELINKNAEKSAAGATV--GATNE 157
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+PG R ++L +F ++LT +A+E +DPV+GR+ E++R IQIL RRTKNNP+L+G
Sbjct: 158 PYRFGTPG-GRQASLSEFGINLTQQAAEGKLDPVVGRDREVERTIQILGRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIVQ +VP L K++ SLD+GLL+AG + RGE E R+ ++ E+
Sbjct: 217 EPGVGKTAIAEGLAQRIVQGDVPPLLHDKQVFSLDLGLLLAGTRFRGEFEERLKGIVEEV 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++IL IDE+HTL+G+G + G LD +N++KP+L RGELQC+ +TT +E+R
Sbjct: 277 RQAGNIILVIDEIHTLVGAGAL-----GGSLDAANMIKPALARGELQCLGTTTLNEYRQY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS + + IL GLR++YE HH KF+ A+ AA LS RYIS
Sbjct: 332 IEKDAALERRFQPVKVGEPSITETIEILHGLRKQYEDHHKVKFSDAALTAAAKLSDRYIS 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR H++ ++KK P+ +E
Sbjct: 392 DRFLPDKAIDLIDEAGSRMHVQYSQKKKAH--------PETEAEE--------------- 428
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
S I+ SL D++E IA + S W+G+PV ++ E
Sbjct: 429 -------------SPIINPQSLVPVVDEEE--------IAEIVSSWTGVPVNKVNETESE 467
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ LE +L +R+IGQ+EAV+A++RAV+R+RVG+KDPNRP A+ +F GPTGVGKTELAK+
Sbjct: 468 SLIYLEARLHERIIGQNEAVSAVARAVRRARVGMKDPNRPIASFVFAGPTGVGKTELAKA 527
Query: 679 LAACYFGS----VRIHYLFFPSPFNSVKV 703
LA FG+ +R+ F P K+
Sbjct: 528 LATFLFGAADAMIRLDMSEFMEPHTVSKL 556
>gi|147866973|emb|CAN78847.1| hypothetical protein VITISV_010724 [Vitis vinifera]
Length = 890
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 267/616 (43%), Positives = 370/616 (60%), Gaps = 58/616 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKA 137
++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + A
Sbjct: 64 AMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDA 123
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E ++E +R G+N+I E
Sbjct: 124 RVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSE 170
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LG D +++ A S +
Sbjct: 171 HLLLGLLREGEGVAARVLENLGADPSNIRTQA------------------------SKAV 206
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+
Sbjct: 207 GAGVGGGTTGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLI 266
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ E
Sbjct: 267 GEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 326
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 327 IKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRK 381
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EPS ++ ++I GLRE+YE HH ++T EA+ +A LS +YI
Sbjct: 382 HIEKDPALERRFQPVKVPEPSVDETIQIXKGLRERYEIHHKLRYTDEALVSAARLSYQYI 441
Query: 498 SDRYLPDKAIDLVDEAGSRA---HIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
SDR+LPDKAIDL+DEAGSR H +L + +E L K +E +
Sbjct: 442 SDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARE-----LEKELRQITKEKNEAVRSQDFE 496
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPD----DIAAVASLWSGIPVQ 610
+ L+ D + +++ + E +GP DI + S W+GIPV+
Sbjct: 497 KAGELR--DREMDLKAQISTLIDKGKEMTKAETEAGDIGPMVTEVDIQHIVSAWTGIPVE 554
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
+++ DE L+ +EE L +RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGV
Sbjct: 555 KVSTDESDRLLKMEETLHRRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGV 614
Query: 671 GKTELAKSLAACYFGS 686
GK+ELAK+LAA YFGS
Sbjct: 615 GKSELAKALAAYYFGS 630
>gi|294793817|ref|ZP_06758954.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
3_1_44]
gi|294455387|gb|EFG23759.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
3_1_44]
Length = 815
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 259/618 (41%), Positives = 363/618 (58%), Gaps = 67/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGL--IAEDRHPNGFLESGITIDKAR 138
+ +RFT+ A + + +Q A LG D V T+H+L+GL + E G+ +
Sbjct: 1 MMQRFTDDAQRVLSLAQEAALELGHDYVGTEHVLIGLTKVKNGVAAKALEELGLVTEDIF 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
EAV G+ A + + K V E A++ + +N++ EH
Sbjct: 61 EAV--------------EEHVGRGNKKATSIYMTPRVKHVLELAIQVANHMNHNYVGTEH 106
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL + G A +L+ + + N + A+ + G + +G +G+ N+ G+
Sbjct: 107 ILLGLLSDGSGVAVAILRAMNIRSNDVVE-AIRSILG--SNKGSNNGGQEGINSNNDLGE 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L F DL A + IDPVIGR+TEIQR+IQIL RRTKNNP+L+G
Sbjct: 164 --------------LSDFATDLNESAKQGKIDPVIGRDTEIQRVIQILSRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV VP L +KRI+SL +G ++AGAK RGE E R+ I E+
Sbjct: 210 EPGVGKTAIAEGLAQRIVTGNVPEILRNKRIISLSIGSMLAGAKYRGEFEERLKKAIDEV 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
Q+ D+I+FIDE+HTL+G+G +D +N+LKP+L RGE Q I +TT DE++
Sbjct: 270 QQHDDMIIFIDEIHTLVGAGAT-----EGAMDAANILKPALARGEFQVIGATTLDEYKKH 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP++EDA+ IL GLR++YEA H K T EA+ AAV LS+RYI+
Sbjct: 325 IEKDAALERRFQPVQVGEPNEEDALEILKGLRDRYEAFHKAKITDEALTAAVSLSSRYIT 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR--TVQAMHEVV-- 554
DR+LPDKAID+VDEA S+ +++F S PD E R TV+ E
Sbjct: 385 DRFLPDKAIDVVDEAASKVRMKVF-----------SAAPDVKALEDRLNTVKKEKEAAVT 433
Query: 555 -----QGSRLKYDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
+ ++L+ ++ ++ +GD I E S D+ +V +DIAAV + W+GI
Sbjct: 434 SQDFEKAAKLRDEEQSLLKEIGDKKSIAKEKS-------DQKLIVTEEDIAAVVAQWTGI 486
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV +I +E L+ LEE+L KRV+GQDEAV A+++AV+R+R GLKDP RP + LF GP
Sbjct: 487 PVAKIAEEESATLLHLEEELHKRVVGQDEAVTAVAKAVRRARAGLKDPKRPIGSFLFLGP 546
Query: 668 TGVGKTELAKSLAACYFG 685
TGVGKTELA++LA+ FG
Sbjct: 547 TGVGKTELARALASSLFG 564
>gi|397669226|ref|YP_006510761.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium propionicum F0230a]
gi|395143331|gb|AFN47438.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium propionicum F0230a]
Length = 831
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 254/616 (41%), Positives = 371/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EAK L + + T+HLLLGLI E + GI++ AR
Sbjct: 1 MFERFTDRARRVIVLAQDEAKLLNHNYIGTEHLLLGLIHEGEGVAAKALEQMGISLQAAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E VV I QG+ S +PFS KRV E ++ + +N+I EH
Sbjct: 61 EQVVEIM------------GQGQQVPSG-HIPFSPRAKRVLELSLREALQMNHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+ + + + L G +G+E S+A
Sbjct: 108 ILLGLVREGEGVAAQVLLKLGADLGRVRSTVIQLLAG---YQGKEASMA----------- 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A P ++ + L+QF +LT A E +DPVIGR +EI+R++ +L RRTKNNP+L+G
Sbjct: 154 GAPEAGPEKSSSQVLDQFGRNLTQAARENRLDPVIGRVSEIERVMTVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGL+ IV+ +VP L K+I +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLSQAIVRGDVPETLRDKQIYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 KTRGDIMLFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ AA ++ RYI
Sbjct: 329 IEKDAALERRFQPIQVAEPSVALTIDILKGLRDRYEAHHRITITDEALTAAATMADRYIQ 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV-- 554
DR+LPDKAIDL+DEAG+R I+ ++ PPD ++ ++I ++ +
Sbjct: 389 DRFLPDKAIDLIDEAGARLRIQR-----------MTAPPDLREFDEQIAKLKMEKDAAID 437
Query: 555 -----QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+RL+ DDV +E + D D PAVVG ++IA V S +GIPV
Sbjct: 438 AQDFETAARLR-DDVTRIQAQRAE---KEEAWKQGDSDIPAVVGEEEIAVVLSSSTGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR IGQ++AV A++R+++R+R GLKDP RP+ + +F GP+G
Sbjct: 494 FKLTEEESARLLRMEQELGKRYIGQEDAVKALARSIRRTRAGLKDPKRPSGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL K+L FG
Sbjct: 554 VGKTELTKALTEFLFG 569
>gi|392392052|ref|YP_006428654.1| chaperone ATPase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390523130|gb|AFL98860.1| ATPase with chaperone activity, ATP-binding subunit
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 826
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 263/615 (42%), Positives = 381/615 (61%), Gaps = 57/615 (9%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-----DRHPNGFLESGITIDKA 137
E++TE+A+KA+ F+ EAK +G ++ T+HLLLGL+AE + +G G+T +K
Sbjct: 3 EKYTEKALKALQFASEEAKRMGSSVIGTEHLLLGLVAEGEGIASKSLHGI---GVTPEKI 59
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
RE + ++ G+PF+ ++ + KRV E A E +R G ++I E
Sbjct: 60 REQIGNL------------TGIGQPFT--GEVSLTPRVKRVLELAHEEARRHGVSYIGTE 105
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LGV+ + V L G+ + + P A G
Sbjct: 106 HLLLGLLMEGEGVAARVLRNLGVNPERIWKQVVQLLGGQ-SDDIPMPGGAPG-------- 156
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ +K+ G AL +F DLT +A + +DPV+GRE EI+R++Q+L RRTKNNP+L+
Sbjct: 157 -PSPVKNNGTANTPALNEFGRDLTQQARDGKLDPVVGREDEIERVVQVLSRRTKNNPVLI 215
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RIV +VP L KR+++LD+ ++AG+K RGE E R+ ++ E
Sbjct: 216 GEPGVGKTAIAEGLAQRIVSNKVPETLAGKRVVTLDLSAVVAGSKYRGEFEERLKKVMEE 275
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ G +I+FIDE+HTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 276 IRVDGRIIVFIDELHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRK 330
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EP+ E A++IL GLR++YEAHH K T EA+ AAV +S RYI
Sbjct: 331 YIEKDPALERRFQPITVGEPTVEQAIQILFGLRDRYEAHHRTKITDEAVEAAVKMSDRYI 390
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
SDR+LPDKAIDL+DEA SR + F + PPD ++I T++ E
Sbjct: 391 SDRFLPDKAIDLMDEAASRVRLAAF-----------TAPPDLKSLEEKIETLKGEKEAAV 439
Query: 556 GSRLKYDDVVASMGDTSEIVVE-----SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
S+ +++ + ++ E ++ S D ++ V DDIA + + W+GIPV+
Sbjct: 440 LSQ-EFEKAAKFRDEEHQLREELSQLRNTWESKRDVNQSEVTA-DDIAQIVASWTGIPVK 497
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++ +E L+GLEE L +RV+GQ++AV A+SRAV+R+R GLKDP RP + +F GPTGV
Sbjct: 498 KLAQEESERLLGLEETLHQRVVGQEDAVKAVSRAVRRARAGLKDPKRPVGSFIFLGPTGV 557
Query: 671 GKTELAKSLAACYFG 685
GKTELA++L+ FG
Sbjct: 558 GKTELARALSEALFG 572
>gi|296138309|ref|YP_003645552.1| ATPase AAA [Tsukamurella paurometabola DSM 20162]
gi|296026443|gb|ADG77213.1| ATPase AAA-2 domain protein [Tsukamurella paurometabola DSM 20162]
Length = 855
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 263/612 (42%), Positives = 372/612 (60%), Gaps = 43/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------VGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KEG EP+ A G R +S G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEGGEPAGA-GARASS--GG 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S + L+QF +LTA A++ +DPVIGR EI+RI+Q+L RRTKNNP+L+G
Sbjct: 165 EAGTPST----SLVLDQFGRNLTAAAAQGKLDPVIGRSKEIERIMQVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQAIVNGNVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLRKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 281 DTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E A+ IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 336 IEKDAALERRFQPVQVGEPSVEHAIEILKGLRDRYEAHHRISITDSALVAAATLADRYIN 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 396 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLRQFDDKIADARREKESAID 444
Query: 559 LKYDDVVASMGDTSEIVV-----ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + ++ A D D A V + IA V W+GIPV ++T
Sbjct: 445 EQDFEKAASLRDKEKQLIGERAEREKQWRAGDLDVVAEVDEEQIAEVLGNWTGIPVFKLT 504
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 505 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 564
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 565 ELSKALANFLFG 576
>gi|297627171|ref|YP_003688934.1| ATP-dependent Clp protease ATP-binding protein [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296922936|emb|CBL57518.1| chaperone clpC (Clp-family ATP-binding protease) (ATP-dependent Clp
protease ATP-binding subunit) [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 858
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 252/617 (40%), Positives = 369/617 (59%), Gaps = 56/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EAK L + + T+H+LLGLI E + GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQDEAKMLNHNYIGTEHILLGLIHEGEGVAAKALEQMGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V+ I + T +PF+ K+V E ++ + +++I EH
Sbjct: 61 EQVIEIIGQGSTPPT-------------GHIPFTPRAKKVLEYSLREALQMNHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G + G +P+ A
Sbjct: 108 ILLGLIREGEGVAAQVLIKLGADLNRVRTTVLQLLSGYQEEGGGQPATAG---------- 157
Query: 259 TAALKSPG-RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A PG T AL+QF +LT A + +DPVIGR+ E++R++ +L RRTKNNP+L+
Sbjct: 158 -APEMGPGTSTNNGALDQFGRNLTQAARDNKLDPVIGRQKEVERVMTVLSRRTKNNPVLI 216
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ +VP L K+I +LD+G L+AG++ RG+ E R ++ E
Sbjct: 217 GEPGVGKTAVVEGLAQAIVRGDVPETLRDKQIYTLDLGALVAGSRYRGDFEERFKKVLKE 276
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GDV+LFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 IKTRGDVMLFIDELHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRK 331
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS + + IL GLR++YEAHH T EA++A +L+ RYI
Sbjct: 332 HIEKDAALERRFQPIQVDEPSVQLTIEILKGLRDRYEAHHRVTITDEALSAGANLADRYI 391
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAG+R I ++ PPD ++ +I +A E
Sbjct: 392 QDRFLPDKAIDLIDEAGARMRI-----------ARMTAPPDLREFDDKIAATRAEKEAA- 439
Query: 556 GSRLKYDD--VVASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ + D A + D T+ + + + D PAVVG ++IA V S +G+P
Sbjct: 440 ---IDHQDFEAAAKLRDDERKLTAARAEKETAWREGESDTPAVVGEEEIAEVLSSSTGVP 496
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T +E L+ +E+++ KR IGQDEAV AISR+++R+R GLKDPNRP+ + +F GP+
Sbjct: 497 VARLTEEESQRLLNMEDEIHKRYIGQDEAVKAISRSIRRTRAGLKDPNRPSGSFIFAGPS 556
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTEL K+L FG
Sbjct: 557 GVGKTELTKALTEFLFG 573
>gi|377565955|ref|ZP_09795231.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia sputi
NBRC 100414]
gi|377526869|dbj|GAB40396.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia sputi
NBRC 100414]
Length = 847
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/612 (42%), Positives = 372/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P + + L+QF +LTA A+E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 SSEAGTP--STSLVLDQFGRNLTAAAAEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGQVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE HH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYETHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDERIADARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVNERAEREKQWRSGDMDVVAEVNDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|255654110|ref|ZP_05399519.1| ATP-dependent Clp protease [Clostridium difficile QCD-23m63]
gi|296449851|ref|ZP_06891618.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
difficile NAP08]
gi|296877915|ref|ZP_06901935.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
difficile NAP07]
gi|296261338|gb|EFH08166.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
difficile NAP08]
gi|296431112|gb|EFH16939.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
difficile NAP07]
Length = 815
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 263/614 (42%), Positives = 370/614 (60%), Gaps = 57/614 (9%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
F RFT+RA KA+ + AK LG ++V ++H+LLGL+ E E GI A + +
Sbjct: 3 FNRFTQRAKKAIDLAFESAKGLGHNIVGSEHILLGLLRE--------EEGI----AAKVL 50
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ + + +GK + + S +K++ E + ++ N+I EHI L
Sbjct: 51 SKVGFTEAYLEGKIVDMEGKGEEISEDIVLSPRSKQILELSGMFANKLKTNYIGTEHILL 110
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
+ +G A ++L GV+ LA + + + ++ + + + ENS +G
Sbjct: 111 AIIQEGEGIANKILNYAGVNDRTLAQLTIDMMG--ISDKNQYKA------ENSYTG---- 158
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
+ + + L+++ +LT A + IDPVIGRE EIQR+IQIL RRTKNNP+L+G+ G
Sbjct: 159 --NQNQAESKVLDKYGRNLTLYAKQNKIDPVIGREKEIQRVIQILSRRTKNNPVLIGDPG 216
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA I VP L +K + SL+MG L+AGAK RGE E R+ ++ E+ K+
Sbjct: 217 VGKTAIAEGLATNIALGNVPETLKNKTLYSLEMGSLLAGAKYRGEFEERIKEVVDEVVKN 276
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G++ILFIDE+HT+IG+G+ G G+ +D SN+LKP+L RGE+Q I +TT DE+R EK
Sbjct: 277 GNIILFIDEMHTIIGAGSTGEGS----IDASNILKPALARGEIQVIGATTIDEYRKHVEK 332
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQPV++ EP++ED+++IL GLR+KYEAHH K T +AI AAV LS RYISDRY
Sbjct: 333 DSALERRFQPVMVDEPTKEDSIKILEGLRDKYEAHHKVKITDDAIKAAVELSTRYISDRY 392
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQ---EIRTVQAMHEVVQGSR 558
LPDKAIDL+DEA S+ R KE + PP + + EI + E + R
Sbjct: 393 LPDKAIDLIDEAASKV------RLKE------NTPPSEIKKLELEIENIDKEKE--EAVR 438
Query: 559 LKYDDVVASMGDTS-------EIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + A + D E V E S+ D +V + IA V LW+GIPV +
Sbjct: 439 CQDFEKAAKIRDEQGLLKKQLEDVRERWSKSSKHSD---LVDGEVIAEVVGLWTGIPVNK 495
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
I +E L+ LEE L RVIGQ++AV +IS+A++RSR GLKDPNRP + LF GPTGVG
Sbjct: 496 ILEEEADRLLRLEEILHNRVIGQEQAVKSISKAIRRSRAGLKDPNRPIGSFLFLGPTGVG 555
Query: 672 KTELAKSLAACYFG 685
KTEL+K+LA FG
Sbjct: 556 KTELSKALAEVQFG 569
>gi|410867351|ref|YP_006981962.1| Negative regulator of genetic competence ClpC/MecB
[Propionibacterium acidipropionici ATCC 4875]
gi|410823992|gb|AFV90607.1| Negative regulator of genetic competence ClpC/MecB
[Propionibacterium acidipropionici ATCC 4875]
Length = 841
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 259/614 (42%), Positives = 375/614 (61%), Gaps = 52/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK+L + + T+HLLLGLI+E LES I+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I NN + A +PF+ K+V E ++ + +++I EH
Sbjct: 61 AQVEEIIGHGNN-------------TPAGHIPFTPRAKKVLELSLREALQMNHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL RLG D+N + + LQG + +E + +G
Sbjct: 108 ILLGLIREGEGVAAQVLIRLGADLNTVRNTVLQLLQGYQGND----------KEAATAG- 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A P ++ A+ L+QF +LT A + +DPVIGRETEI+R++ +L RRTKNNP+L+G
Sbjct: 157 -APDVGPAQSSATVLDQFGRNLTQAAKDGELDPVIGRETEIERVMTVLSRRTKNNPVLIG 215
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGK+A EGLA IV+ +VP L K+I SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 216 EPGVGKSACVEGLAQAIVRGDVPETLRGKQIYSLDLGSMVAGSRYRGDFEERMKKVLKEI 275
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HTL+G+G +G +D +++LKP L RGELQ + +TT DE+R
Sbjct: 276 KTRGDIVLFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTVGATTLDEYRKH 330
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR+KYEAHH T EAI+AA +LSARY+
Sbjct: 331 IEKDAALERRFQPIQVAEPSVPLTIEILKGLRDKYEAHHKITITDEAISAAANLSARYVQ 390
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I +R ++ PPD +EI A + + S
Sbjct: 391 DRFLPDKAIDLIDEAGARMRI---RR--------MTAPPD--LREIDDKIAQVRIDKESA 437
Query: 559 LKYDDVVASMG---DTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ D + G D +++ E A D PAVVG ++IA V S +GIPV +
Sbjct: 438 IDAQDFERAAGLRDDEKKLISEREAKEEAWKAGDSSVPAVVGEEEIAEVLSSSTGIPVFK 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E+++ KR +GQ +AV A+SR+++R+R GLKDP RP + +F GP+GVG
Sbjct: 498 LTEEESERLLHMEDEIGKRYVGQTDAVKALSRSIRRTRAGLKDPKRPMGSFIFAGPSGVG 557
Query: 672 KTELAKSLAACYFG 685
KTEL K+L FG
Sbjct: 558 KTELTKALTEFLFG 571
>gi|256372657|ref|YP_003110481.1| ATPase AAA-2 domain-containing protein [Acidimicrobium ferrooxidans
DSM 10331]
gi|256009241|gb|ACU54808.1| ATPase AAA-2 domain protein [Acidimicrobium ferrooxidans DSM 10331]
Length = 829
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 256/615 (41%), Positives = 377/615 (61%), Gaps = 52/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFT+RA + ++ +Q EAK L + + T+H+LLGL+ E LES G+++D+ R
Sbjct: 1 MFERFTDRARRVLVLAQEEAKLLHHNYIGTEHILLGLVHEGEGIAAKALESLGVSLDQLR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V ++ P + F++ K+V E ++ + G+N+I EH
Sbjct: 61 EEVTR-------------QSEPSPGPTPNSPAFTVRAKKVLEYSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G+ +VL LGVD+ + + L + EGR P++ +G +G
Sbjct: 108 MLLGLVREGEGTGAKVLLALGVDLTRVRQQVMQILS---STEGR-PTVGQG------AGP 157
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +PG + L+QF +LT A + +DPV+GR+ EI+R++Q+L RR KNNP+L+G
Sbjct: 158 SQGQDAPGGS--PILDQFGRNLTQMARDRKLDPVVGRDNEIERMMQVLSRRQKNNPVLIG 215
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGK+AI EGLA RIV EVP L K+I +LD+G L+AG++ RG+ E R+ ++ E+
Sbjct: 216 EPGVGKSAIVEGLAQRIVAGEVPDTLRGKQIYTLDLGALVAGSRYRGDFEERLKKVLKEV 275
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ ++ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 276 RTKENIILFIDEIHTLVGAGAAE-----GAIDAASILKPMLARGELQTIGATTIDEYRKH 330
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS ED IL GLRE+YEAHHN T EA+ AA +++ RYIS
Sbjct: 331 LEKDAALERRFQPIKVGEPSIEDTFEILKGLRERYEAHHNVTITDEALVAAANMADRYIS 390
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQE---IRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAGSR I KR ++ PP+ E RT + +
Sbjct: 391 DRFLPDKAIDLIDEAGSRLRI---KR--------VTSPPELRQVENDLTRTRRDKEGAI- 438
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSAS----DDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+R +D+ SE+V + A+ D+ VV + IA V ++W+GIPV Q
Sbjct: 439 -ARQNFDEAKRLAARESELVSRKAELEAAWKREGDERFGVVDEEVIAEVLAMWTGIPVNQ 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E++L R++GQ+EA++A+SRA++R+R GLKDP RP+ + +F GPTGVG
Sbjct: 498 LTEEETSKLLRMEDELHHRIVGQEEAISALSRAIRRTRAGLKDPRRPSGSFIFLGPTGVG 557
Query: 672 KTELAKSLAACYFGS 686
KTELAK+LA FG
Sbjct: 558 KTELAKTLAEFLFGD 572
>gi|409388485|ref|ZP_11240462.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
rubripertincta NBRC 101908]
gi|403201559|dbj|GAB83696.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
rubripertincta NBRC 101908]
Length = 848
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/612 (42%), Positives = 373/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P + + L+QF +LTA A+E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 SSETGTP--STSLVLDQFGRNLTAAAAEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGQVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE+HH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYESHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDERIADARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVAERAEREKQWRSGDMDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|441512961|ref|ZP_20994794.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
amicalis NBRC 100051]
gi|441452336|dbj|GAC52755.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
amicalis NBRC 100051]
Length = 848
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/612 (42%), Positives = 373/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P + + L+QF +LTA A+E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 SSESGTP--STSLVLDQFGRNLTAAAAEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGQVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE+HH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYESHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDRIADARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVAERAEREKQWRSGDMDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|373859602|ref|ZP_09602328.1| ATPase AAA-2 domain protein [Bacillus sp. 1NLA3E]
gi|372450597|gb|EHP24082.1| ATPase AAA-2 domain protein [Bacillus sp. 1NLA3E]
Length = 813
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/610 (42%), Positives = 364/610 (59%), Gaps = 53/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA L + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLSHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ + + G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LYALGLGSEKIQKEVENLIGRGQEASQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L G S +G G TA
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLL-------GSNESGHQG-------GGTA 155
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 156 NANTP------TLDSLARDLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 209
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 210 GVGKTAIAEGLAQQIVNNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 269
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 270 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 324
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ ++++ IL GLR++YEAHH T EAI AAV LS RYI DR
Sbjct: 325 KDAALERRFQPIRVDEPTADESILILKGLRDRYEAHHRVSITDEAIEAAVSLSDRYIPDR 384
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGS+ + + + PP+ E++ E + +
Sbjct: 385 FLPDKAIDLIDEAGSKVRLRSY-----------TTPPNLKELEVKLEVVRKEKDAAVQSQ 433
Query: 561 YDDVVASMGDTSEIVVES-----SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D+ + + E E + V +DIA V + W+GIPV ++
Sbjct: 434 EFEKAASLRDSEQRLREQLEETKKTWKEKQGQENSEVTVEDIATVVANWTGIPVSKLAQT 493
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LEE + RVIGQ+EAV A+S+AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 494 ETDKLLKLEEIIHSRVIGQEEAVVAVSKAVRRARAGLKDPKRPIGSFVFLGPTGVGKTEL 553
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 554 ARALAEAMFG 563
>gi|149275671|gb|ABR23161.1| ATP-dependent Clp protease regulatory subunit ClpC [Ulva fasciata]
Length = 904
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 273/693 (39%), Positives = 397/693 (57%), Gaps = 73/693 (10%)
Query: 10 SVNSRCLFANQPPPPRHRLPPLQYVNPMSSFFNISMISHKVQFFHSNYTSNNNNCNPICA 69
+V S L A + P R ++ Q ++ + F +++ H S + +
Sbjct: 7 TVGSCRLVAGRRVPARRKV---QVLSTFTGFRRGNVVDAATACPHGAVKSKTSRSSQSGT 63
Query: 70 RKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGF 127
+K P + +FERFTE+A+K V+ +Q E++ LG + V T+ +LLGLI E
Sbjct: 64 KK-----PTTMMFERFTEKAIKVVMLAQEESRRLGHNFVGTEQILLGLIGEATGIAAKVL 118
Query: 128 LESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSR 187
+ G+ + +AR V I +G F A ++PF+ KRV E ++E +R
Sbjct: 119 KQMGVNLKEARTEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEAR 165
Query: 188 SRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLA 247
G+++I EHI LGL +G A RVL+ +G D + V R+ GE +EP A
Sbjct: 166 QLGHSYIGTEHILLGLLREGEGIAARVLESMGADSEKIRHQVV-RMVGE----SQEPVGA 220
Query: 248 KGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILC 307
+ G ++ K+P LE++ +LT +A E +DPV+GR EI R+IQIL
Sbjct: 221 ------GVGGSQSSNKTP------TLEEYGTNLTKQAEEGKLDPVVGRTKEIDRVIQILG 268
Query: 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGEL 367
RRTKNNP L+ S V + AEGLA +I +VP + K+ ++LDMGLL+AG K RGE
Sbjct: 269 RRTKNNPCLI-VSLVSVDSSAEGLAQKIASGDVPETIEGKQAVTLDMGLLVAGTKYRGEF 327
Query: 368 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427
E + L+ EI+++ D+IL IDEVHTLIG+G +D +N+LKP+L RGELQC+
Sbjct: 328 EEHLKKLMDEIKQNDDIILMIDEVHTLIGAGAAE-----GAIDAANILKPALARGELQCM 382
Query: 428 ASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAIN 487
+TT DE+R EKD AL RRF+PV ++EPS ++ +IL GLRE+YEAHH ++T +A+
Sbjct: 383 GATTLDEYRKHIEKDPALERRFRPVRVNEPSVDETYQILTGLRERYEAHHKLRYTDDALL 442
Query: 488 AAVHLSARYISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCIL 533
AA S +YISDR+LPDKAIDL+DEAGSR + EL +KE+ +C+
Sbjct: 443 AAAQYSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAREVEKELRGIQKEKDSCVR 502
Query: 534 SKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG 593
+ QE + + + K D +V S+ + + + V
Sbjct: 503 A-------QEFEKAGELRDREVELKAKIDTIV------SDKKAQDDAEADAAGGAGPTVQ 549
Query: 594 PDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLK 653
DIA + + W+GIPV+++++DE LV +E L RVIGQ+EAV AISRA++R+RVGLK
Sbjct: 550 ETDIANIVAQWTGIPVEKVSSDETERLVNMESVLHNRVIGQEEAVVAISRAIRRARVGLK 609
Query: 654 DPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
+PNRP A+ +F GPTGVGK+ELAK+LA YFGS
Sbjct: 610 NPNRPIASFIFSGPTGVGKSELAKTLATYYFGS 642
>gi|296118950|ref|ZP_06837523.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Corynebacterium ammoniagenes DSM 20306]
gi|295968048|gb|EFG81300.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Corynebacterium ammoniagenes DSM 20306]
Length = 905
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/620 (41%), Positives = 368/620 (59%), Gaps = 46/620 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIQEGEGVAAKALESMGISLEDVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V +I H T + +PF+ K+V E ++ G+ +I E
Sbjct: 61 GEVEAIIGHGTQPHN--------------GHVPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGV------R 251
+ LGL +G A +VL +LG D+ + + L G +G +P G +
Sbjct: 107 FLLLGLIREGEGVAAQVLTKLGADLPRVRQQVIQLLSGYEGNQGDKPEAGSGPVGAGTGQ 166
Query: 252 ENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTK 311
+N R+ + L+QF +LT A + +DPV+GRE+EI+RI+Q+L RRTK
Sbjct: 167 QNPGRQGPGGQGE--RSNSLVLDQFGRNLTQAAKDGKLDPVVGRESEIERIMQVLSRRTK 224
Query: 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV 371
NNP+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+
Sbjct: 225 NNPVLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQVYSLDLGSLVAGSRYRGDFEERL 284
Query: 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431
++ EI + GD+ILFIDE+HTL+G+G +G +D ++LLKP L RGELQ I +TT
Sbjct: 285 KKVLKEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASLLKPKLARGELQTIGATT 339
Query: 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491
DE+R EKD AL RRFQPV + EPS ED + IL GLR+KYEAHH +T +A+ AA
Sbjct: 340 LDEYRKHIEKDAALERRFQPVQVDEPSMEDTITILRGLRDKYEAHHRVSYTDDALKAAAS 399
Query: 492 LSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH 551
LS RYI+DR+LPDKA+DL+DEAG+R I K + DD ++R +
Sbjct: 400 LSDRYINDRFLPDKAVDLLDEAGARMRIRRMTAPKGIREV------DDRIADVRKEKEAA 453
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSG 606
Q + A + DT + E + D +E A + D IA V + W+G
Sbjct: 454 IDAQDF-----EKAAGLRDTERKLHEERSTKEKQWRSGDLEEIAEITEDQIAEVLAHWTG 508
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +EE+L KR+IGQ+EAV A+SRA++R+R GLKDP RP+ + +F G
Sbjct: 509 IPVLKLTEKESSRLLNMEEELHKRIIGQNEAVKAVSRAIRRTRAGLKDPRRPSGSFIFAG 568
Query: 667 PTGVGKTELAKSLAACYFGS 686
P+GVGKTEL+K+LA FGS
Sbjct: 569 PSGVGKTELSKALANFLFGS 588
>gi|403385695|ref|ZP_10927752.1| negative regulator of genetic competence clpC/mecB [Kurthia sp.
JC30]
Length = 820
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/613 (43%), Positives = 367/613 (59%), Gaps = 55/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F FT+RA K + +Q EA + D + T+H+LLGLI E G KA EA
Sbjct: 2 MFNHFTQRAQKVLQLAQEEAIRMKHDAIGTEHILLGLIRE---------GGGIAAKALEA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + + + G + ++ K+V E +V+ SR G+ +I EHI
Sbjct: 53 I-EVTPEVIEEGIEKLVGVGTK-DVGPVVHYTPRAKKVIELSVDESRKLGHTYIGTEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L L +G A RVL GV +N A V +L G ++ +
Sbjct: 111 LALIREGEGVAARVLNNAGVSLNK-ARQQVLQLLG---------------NHDTNTNGNN 154
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P + + L+ DLT A E +DPVIGR EI R+I++L RRTKNNP+L+GE
Sbjct: 155 TNAAPTASTPT-LDSLARDLTQIAREGSLDPVIGRSKEITRVIEVLSRRTKNNPVLIGEP 213
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 214 GVGKTAIAEGLAQQIVNNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 273
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 274 AGNVILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 328
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E+AV+I+ GLR++YEAHH K T EA+ AAV LS RYISDR
Sbjct: 329 KDAALERRFQPIQVDEPTPEEAVQIIRGLRDRYEAHHRVKITDEAVEAAVQLSNRYISDR 388
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQA-MHEVVQGS 557
+LPDKAIDL+DEAGS+ + + + PP+ + Q++ V+A + VQ
Sbjct: 389 FLPDKAIDLMDEAGSKVRLRSY-----------TTPPNLKELEQKLEAVKAEKNAAVQSQ 437
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQI 612
+ A++ D+ + + E + + E + V +DIA V ++W+GIPV +I
Sbjct: 438 EFEK---AANLRDSEQKIKEELETTKKEWKEKQGRSESEVTVNDIAEVVAMWTGIPVAKI 494
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ LE++L KRV+GQ EAV AISRA++R+R GLKDP RP + +F GPTGVGK
Sbjct: 495 AQEESAKLLNLEDELHKRVVGQGEAVEAISRAIRRARAGLKDPKRPIGSFIFLGPTGVGK 554
Query: 673 TELAKSLAACYFG 685
TELA++LA FG
Sbjct: 555 TELARALAEVMFG 567
>gi|384250946|gb|EIE24424.1| hypothetical protein COCSUDRAFT_28166 [Coccomyxa subellipsoidea
C-169]
Length = 849
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/621 (41%), Positives = 378/621 (60%), Gaps = 59/621 (9%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAREAVV 142
+ ++A+K V+ +Q EA+ LG + V T+ +LLGLI E L+S G+ + AR V
Sbjct: 8 WYQQAIKVVMLAQEEARRLGHNFVGTEQILLGLIGESTGIAAKVLKSMGVNLKDARVEVE 67
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
I +G F A ++PF+ KRV E ++E +R G+N+I EHI LG
Sbjct: 68 KII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHILLG 114
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
L +G A RVL+ LG D + + V R+ GE +++++
Sbjct: 115 LLREGEGVAARVLETLGADASKIRT-QVIRMVGE--------------SQDTVT--VGGG 157
Query: 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322
+ LE++ +LT +A+E +DPV+GR+ EI+R+ QIL RRTKNNP L+GE GV
Sbjct: 158 SGSSSNKMPTLEEYGTNLTTQATEGKLDPVVGRKKEIERVTQILGRRTKNNPCLIGEPGV 217
Query: 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG 382
GKTA+AEGLA +I +VP + K++++LDMGLL+AG K RGE E R+ L+ EI+++
Sbjct: 218 GKTAVAEGLAQKIANGDVPETIEGKQVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQND 277
Query: 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD 442
D+IL IDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R EKD
Sbjct: 278 DIILMIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKD 332
Query: 443 KALARRFQP----------VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492
AL RRFQP + EP+ ++ +ILLGLRE+YEAHH ++T EA++AA
Sbjct: 333 PALERRFQPQARLIMCFLCAHVPEPTVDETYQILLGLRERYEAHHKLRYTDEALDAAAKF 392
Query: 493 SARYISDRYLPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQEIR 545
S++YISDR+LPDKAIDL+DEAGSR + E KE + + K Q+
Sbjct: 393 SSQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARDLDKELRALLKEKDAAVRGQDFE 452
Query: 546 TVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWS 605
+ + ++ ++++ ++ + S+++ P +V DIA + + W+
Sbjct: 453 KAGTLRD----REMELKAQISAITGAAKEGEAAEAESSAEGGGP-LVTEADIANIVAQWT 507
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV+++++DE L+ +EE L +RVIGQ+EAV AISRA++R+RVGLK+PNRP A+ +F
Sbjct: 508 GIPVEKVSSDESERLIKMEETLHQRVIGQEEAVVAISRAIRRARVGLKNPNRPIASFIFS 567
Query: 666 GPTGVGKTELAKSLAACYFGS 686
GPTGVGK+ELAK+LA+ YFGS
Sbjct: 568 GPTGVGKSELAKTLASYYFGS 588
>gi|311112373|ref|YP_003983595.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rothia
dentocariosa ATCC 17931]
gi|310943867|gb|ADP40161.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rothia
dentocariosa ATCC 17931]
Length = 850
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 260/617 (42%), Positives = 374/617 (60%), Gaps = 56/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI E LES G+T++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHLLLGLIHEGEGIGARALESLGVTLNAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V SI + P + + +PF+ K+V E ++ + + +I EH
Sbjct: 61 EQVQSIVGPS-------------PQAPSGHIPFTPRAKKVLELSMREAIQLNHGYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LG+ +G A +VL ++GV + + + G G EN +
Sbjct: 108 ILLGMVRASEGVANQVLSKVGVQGAEVRQAVMDLISG-----------YPGNNENKETAG 156
Query: 259 TAALKSPGRTRASA--LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
A S T A + L+QF +LTA A E +DPVIGR E++R++Q+L RRTKNNP+L
Sbjct: 157 VGAGNSREGTPAGSTILDQFGRNLTAAAREGQLDPVIGRHHEMERVMQVLSRRTKNNPVL 216
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+ EGLA IV +VP L K + +LD+G L+AG++ RG+ E R+ ++
Sbjct: 217 IGEPGVGKTAVVEGLAQAIVHGDVPETLKDKHLYTLDLGSLVAGSRYRGDFEERLKKVLK 276
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 EIRTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYR 331
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+ + EPSQE AV+IL G+R+KYEAHH T E+I AAV+L+ARY
Sbjct: 332 KHIEKDAALERRFQPIQVDEPSQELAVQILKGVRDKYEAHHRVTITDESIEAAVNLAARY 391
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAMH 551
ISDR+LPDKA+DL+DEAG+R I KR ++ PP D+ ++RT +
Sbjct: 392 ISDRFLPDKAVDLIDEAGARLRI---KR--------MTAPPEIKILDEKASKLRTQK--E 438
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSAS---DDDEPAVVGPDDIAAVASLWSGIP 608
+ ++G Y+ A +++ E + + + D V P+ I+ V + +G+P
Sbjct: 439 DAIKGQ--DYEKAAALRDQEQKVLAEKAEAEKAWRENGDAFGEVTPEVISEVLASSTGVP 496
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V +IT +E L+ +E++L KRVIGQD A+ A+SRA++R+R GLKDP RP + +F GPT
Sbjct: 497 VYKITEEESSRLIKMEDELHKRVIGQDNAIKALSRAIRRTRAGLKDPRRPGGSFIFAGPT 556
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTELAK+LA FG
Sbjct: 557 GVGKTELAKALAEFLFG 573
>gi|393198912|ref|YP_006460754.1| chaperone ATPase [Solibacillus silvestris StLB046]
gi|327438243|dbj|BAK14608.1| ATPase with chaperone activity, ATP-binding subunit [Solibacillus
silvestris StLB046]
Length = 814
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/617 (42%), Positives = 369/617 (59%), Gaps = 64/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFT+RA K + +Q EA L + T+H+LLGLI E GI A +A
Sbjct: 2 MFNRFTQRAQKVLQLAQEEAIRLKHKEIGTEHILLGLIREG--------GGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKM-PFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ +I S +T GK + ++ K+V E +++ SR G+ ++ EHI
Sbjct: 50 LEAINISPQMIETGIEELVGKGTEDVGPIVHYTPRAKKVIELSLDESRKLGHAYVGTEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
L L +G A RVL GV +N K ++ L G +++ SG +
Sbjct: 110 LLALIREGEGVAARVLANTGVSIN---------------KARQQVLLLLGNNDSNTSGNS 154
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+ ++ L+ DLTA A E +DPVIGR EI R++++L RRTKNNP+L+GE
Sbjct: 155 SMTQT---VNTPTLDSLARDLTAVAREGSLDPVIGRSKEITRVVEVLSRRTKNNPVLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI+
Sbjct: 212 PGVGKTAIAEGLAQQIINNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 272 QAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EPS E+ ++I+ GLR++YEAHH K + EA+ AA LS RYISD
Sbjct: 327 EKDAALERRFQPIQVDEPSVEETIQIINGLRDRYEAHHRVKISDEAVEAAAKLSDRYISD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAMHEVV 554
R+LPDKAIDL+DEAGS+ + + + PP +D + I++ + + V
Sbjct: 387 RFLPDKAIDLIDEAGSKVRLRSY-----------TVPPNLKELEDKLEGIKSEK--NAAV 433
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIP 608
G + A++ DT E ++ L + E + V DDIA V ++W+GIP
Sbjct: 434 SGQEFEK---AAALRDT-EQKLKQELEQLKKEWKEKQGKEESTVYVDDIAQVVAMWTGIP 489
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V +I E L+ LEE+L KRV+GQ EAV AISRA++R+R GLKDP RP + +F GPT
Sbjct: 490 VSKIAQAESAKLLNLEEELHKRVVGQGEAVEAISRAIRRARAGLKDPKRPIGSFIFLGPT 549
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTELA++LA FG
Sbjct: 550 GVGKTELARALAEVMFG 566
>gi|89893184|ref|YP_516671.1| hypothetical protein DSY0438 [Desulfitobacterium hafniense Y51]
gi|219666457|ref|YP_002456892.1| ATPase AAA [Desulfitobacterium hafniense DCB-2]
gi|423073164|ref|ZP_17061907.1| negative regulator of genetic competence ClpC/MecB
[Desulfitobacterium hafniense DP7]
gi|89332632|dbj|BAE82227.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536717|gb|ACL18456.1| ATPase AAA-2 domain protein [Desulfitobacterium hafniense DCB-2]
gi|361855994|gb|EHL07928.1| negative regulator of genetic competence ClpC/MecB
[Desulfitobacterium hafniense DP7]
Length = 826
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/620 (42%), Positives = 371/620 (59%), Gaps = 67/620 (10%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREA 140
E++TE+A+KA+ F+ EAK +G +++ T+HLLLGL+AE G+T +K RE
Sbjct: 3 EKYTEKALKALQFASDEAKRMGSNVIGTEHLLLGLVAEGEGIAAKSLHGIGVTPEKIREQ 62
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ G+PF+ ++ + KRV E A E +R G ++I EH+
Sbjct: 63 IGNL------------TGIGQPFT--GEVSLTPRVKRVMELAHEEARRHGVSYIGTEHLL 108
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LGV + V L G+ + +
Sbjct: 109 LGLLMEGEGVAARVLRNLGVSPERIWKQVVQLLGGQ----------PDDIPMPGGAPGPG 158
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
K+ G AL +F DLT +A E +DPV+GRE EI+R++Q+L RRTKNNP+L+GE
Sbjct: 159 TAKNNGAANTPALNEFGRDLTQQAREGRLDPVVGREDEIERVVQVLSRRTKNNPVLIGEP 218
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI+ +VP L KR+++LD+ ++AG+K RGE E R+ ++ EI+
Sbjct: 219 GVGKTAIAEGLAQRIINNKVPETLAGKRVVTLDLSAVVAGSKYRGEFEERLKKVMEEIRV 278
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
G +I+FIDE+HTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 279 DGRIIVFIDELHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKYIE 333
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E AV+ILLGLR++YEAHH + T EA+ AAV +S RYISDR
Sbjct: 334 KDPALERRFQPITVGEPTVEQAVQILLGLRDRYEAHHRTQITDEAVEAAVKMSDRYISDR 393
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA SR + F + PPD ++++ E ++ LK
Sbjct: 394 FLPDKAIDLMDEAASRVRLAAF-----------TAPPD--------LKSLEEKIEA--LK 432
Query: 561 YDDVVASMGDT---------------SEIVVESSLPSASDDDEPAVVGPDDIAAVASLWS 605
+ A +G E+ + + D + V DDIA + + W+
Sbjct: 433 SEKEAAVLGQEFEKAAKFRDEEHQLREELAQLRNTWESKRDISQSQVTADDIAQIVASWT 492
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV+++ +E L+GLEE L +RV+GQ++AV A+SRAV+R+R GLKDP RP + +F
Sbjct: 493 GIPVKKLAQEESERLLGLEETLHQRVVGQEDAVKAVSRAVRRARAGLKDPKRPVGSFIFL 552
Query: 666 GPTGVGKTELAKSLAACYFG 685
GPTGVGKTELA++LA FG
Sbjct: 553 GPTGVGKTELARALAEALFG 572
>gi|343925825|ref|ZP_08765340.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
alkanivorans NBRC 16433]
gi|343764176|dbj|GAA12266.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
alkanivorans NBRC 16433]
Length = 848
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/612 (42%), Positives = 373/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P + + L+QF +LTA A+E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 SSESGTP--STSLVLDQFGRNLTAAAAEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGQVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE+HH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYESHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDRIADARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVAERAEREKQWRSGDMDIVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|296271367|ref|YP_003653999.1| ATPase AAA-2 domain-containing protein [Thermobispora bispora DSM
43833]
gi|296094154|gb|ADG90106.1| ATPase AAA-2 domain protein [Thermobispora bispora DSM 43833]
Length = 834
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/614 (42%), Positives = 373/614 (60%), Gaps = 53/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQSAPSG-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A +E++ S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLHG---YQGKEPAAAGATQESTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLVG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQKIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLRKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSIAHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DRYLPDKAIDL+DEAGSR I ++ PPD +Y ++I ++ E
Sbjct: 388 DRYLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREYDEQIAKIRREKESAID 436
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
++ ++ A ++ ++ A D D A V + IA V + +GIPV ++
Sbjct: 437 AQ-DFERAAALRDQEKQLQLKRERREKEWKAGDMDHVAEVTEELIAEVLATATGIPVFKL 495
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T +E L+ +EE+L KR+IGQD+A+ A+SRA++R+R GLKDP RP + +F GP+GVGK
Sbjct: 496 TEEESQRLLRMEEELHKRIIGQDDAIKALSRAIRRTRAGLKDPRRPGGSFIFAGPSGVGK 555
Query: 673 TELAKSLAACYFGS 686
TEL+K+LA FG
Sbjct: 556 TELSKALAEFLFGD 569
>gi|406666957|ref|ZP_11074720.1| Negative regulator of genetic competence ClpC/MecB [Bacillus
isronensis B3W22]
gi|405385240|gb|EKB44676.1| Negative regulator of genetic competence ClpC/MecB [Bacillus
isronensis B3W22]
Length = 814
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/617 (42%), Positives = 369/617 (59%), Gaps = 64/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFT+RA K + +Q EA L + T+H+LLGLI E GI A +A
Sbjct: 2 MFNRFTQRAQKVLQLAQEEAIRLKHKEIGTEHILLGLIREG--------GGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKM-PFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ +I S +T GK + ++ K+V E +++ SR G+ ++ EHI
Sbjct: 50 LEAINISPQMIETGIEELVGKGTEDVGPIVHYTPRAKKVIELSLDESRKLGHAYVGTEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
L L +G A RVL GV +N K ++ L G +++ SG +
Sbjct: 110 LLALIREGEGVAARVLANTGVSIN---------------KARQQVLLLLGNNDSNTSGNS 154
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+ ++ L+ DLTA A E +DPVIGR EI R++++L RRTKNNP+L+GE
Sbjct: 155 SITQT---VNTPTLDSLARDLTAVAREGSLDPVIGRSKEITRVVEVLSRRTKNNPVLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI+
Sbjct: 212 PGVGKTAIAEGLAQQIINNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 272 QAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EPS E+ ++I+ GLR++YEAHH K + EA+ AA LS RYISD
Sbjct: 327 EKDAALERRFQPIQVDEPSVEETIQIINGLRDRYEAHHRVKISDEAVEAAAKLSDRYISD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAMHEVV 554
R+LPDKAIDL+DEAGS+ + + + PP +D + I++ + + V
Sbjct: 387 RFLPDKAIDLIDEAGSKVRLRSY-----------TVPPNLKELEDKLEGIKSEK--NAAV 433
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIP 608
G + A++ DT E ++ L + E + V DDIA V ++W+GIP
Sbjct: 434 SGQEFEK---AAALRDT-EQKLKQELEQLKKEWKEKQGKEESTVYVDDIAQVVAMWTGIP 489
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V +I E L+ LEE+L KRV+GQ EAV AISRA++R+R GLKDP RP + +F GPT
Sbjct: 490 VSKIAQAESAKLLNLEEELHKRVVGQGEAVEAISRAIRRARAGLKDPKRPIGSFIFLGPT 549
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTELA++LA FG
Sbjct: 550 GVGKTELARALAEVMFG 566
>gi|357589640|ref|ZP_09128306.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
nuruki S6-4]
Length = 869
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 259/620 (41%), Positives = 368/620 (59%), Gaps = 45/620 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA++L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARALNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I + G P +PF+ K+V E A+ + G+ +I EH
Sbjct: 61 TEVEDIIGTG-----------GHP--PNGYIPFTPRAKKVLELALREALQLGHKYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRE------ 252
I LGL +G A +VL +LG D++ + + L G EG EP E
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLSRVRQQVIQLLSG---YEGGEPESEHASDEPAGAGV 164
Query: 253 -NSISGKTAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT 310
+ PG+ S L+QF +LT A + +DPV+GR EI+RI+Q+L RRT
Sbjct: 165 GGGDGASSGPSGKPGQKSNSLVLDQFGRNLTQAAKDGKLDPVVGRGKEIERIMQVLSRRT 224
Query: 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370
KNNP+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R
Sbjct: 225 KNNPVLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEER 284
Query: 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430
+ ++ EI + GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +T
Sbjct: 285 LKKVLKEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGAT 339
Query: 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490
T DE+R EKD AL RRFQPV + EPS E V IL GLR++YE HH T +A+ AA
Sbjct: 340 TLDEYRKHIEKDAALERRFQPVQVPEPSVELTVEILKGLRDRYEQHHRVSITDDALKAAA 399
Query: 491 HLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM 550
LS RYI+DR+LPDKA+DL+DEAG+R I+ K Q DD E+R +
Sbjct: 400 RLSDRYINDRFLPDKAVDLIDEAGARMRIKRMTAPKSIQKV------DDRIAEVRRAKEA 453
Query: 551 ----HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
+ + + L+ D+ T E + A + D+ A +GP++IA V W+G
Sbjct: 454 AIDDQDFEKAASLRDDERKL----TEERAEKEKQWRAGELDDVAEIGPEEIAEVLGSWTG 509
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV Q+T +E L+ +E++L KR+IGQ++AV A+SRA++R+R GLKDP RP+ + +F G
Sbjct: 510 IPVVQLTEEESTRLLHMEDELHKRIIGQEDAVKAVSRAIRRTRAGLKDPKRPSGSFIFAG 569
Query: 667 PTGVGKTELAKSLAACYFGS 686
P+GVGKTEL+K+LA FG
Sbjct: 570 PSGVGKTELSKALAEFLFGD 589
>gi|359773810|ref|ZP_09277200.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
effusa NBRC 100432]
gi|359309092|dbj|GAB19978.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
effusa NBRC 100432]
Length = 848
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/613 (42%), Positives = 370/613 (60%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ SP + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 STEAGSP--STSLVLDQFGRNLTAAAGEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGNVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE+HH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYESHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDRIADARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKTLVAERAEREKQWRSGDMDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|404213401|ref|YP_006667576.1| ATPases with chaperone activity, ATP-binding subunit [Gordonia sp.
KTR9]
gi|403644200|gb|AFR47440.1| ATPases with chaperone activity, ATP-binding subunit [Gordonia sp.
KTR9]
Length = 846
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/612 (42%), Positives = 373/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P + + L+QF +LTA ASE +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 SSESGTP--STSLVLDQFGRNLTAAASEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGKVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE+HH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYESHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDRIADARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVAERAEREKQWRSGDMDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|260906427|ref|ZP_05914749.1| ATPase [Brevibacterium linens BL2]
Length = 850
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/613 (41%), Positives = 375/613 (61%), Gaps = 53/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESG--ITIDKAR 138
+FERFT+RA + V+ +Q EAK L + + T+H+LLGLI E G I++++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEAKLLKHNYIGTEHILLGLIHEGEGLAAKALEGMDISLEQVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+++I EH
Sbjct: 61 DQVQEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+ + + L G +G+EP A G E + SG
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLGRVRQEVIKLLSG---YQGKEPVSAGGREEGTPSG- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LTA A E +DPVIGR ++QR++QIL RRTKNNP+L+G
Sbjct: 164 -----------SLVLDQFGTNLTAAAREGTLDPVIGRHEQMQRVMQILSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA+ IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLALAIVNGEVPEILEDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS ++ IL GLR+KYEAHH T A++AAV++S RY++
Sbjct: 328 IEKDAALERRFQPIQVPEPSLAHSIEILKGLRDKYEAHHKVTITEGALSAAVNMSDRYVN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAG++ I LS P + E + ++A H
Sbjct: 388 DRYLPDKAIDLIDEAGAKLRI-----------SRLSVPQEIRDLEEKILEARHRKEAAID 436
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ ++ AS D SE+ ++ ++ D AVV + IA V + +GIP+ ++
Sbjct: 437 AQDFELAASERD-SEMKLQQDKDEQTEAWRKSGKDTSAVVDAELIAEVLAAATGIPIFKL 495
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T +E L+ +E++L KR+IGQD+AV +ISRA++R+R GLKDP RP+ + +F GPTGVGK
Sbjct: 496 TEEESSRLLRMEDELHKRIIGQDDAVKSISRAIRRTRAGLKDPKRPSGSFIFAGPTGVGK 555
Query: 673 TELAKSLAACYFG 685
TELAK+L+ FG
Sbjct: 556 TELAKALSEFLFG 568
>gi|377569546|ref|ZP_09798707.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
terrae NBRC 100016]
gi|377533283|dbj|GAB43872.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
terrae NBRC 100016]
Length = 846
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/612 (42%), Positives = 373/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P + + L+QF +LTA ASE +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 SSESGTP--STSLVLDQFGRNLTAAASEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGKVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE+HH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYESHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDRIADARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVAERAEREKQWRSGDMDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|303288740|ref|XP_003063658.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454726|gb|EEH52031.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 839
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 267/615 (43%), Positives = 375/615 (60%), Gaps = 47/615 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFTE+A+K V+ +Q EA+ LG + V T+ ++LGLI E L+S GI++ +AR
Sbjct: 1 MFERFTEKAIKVVMLAQEEARRLGHNFVGTEQIMLGLIGEGTGIAAKVLKSMGISLKEAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E A+E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELALEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ L D + + + V R+ GE + ++
Sbjct: 108 LLLGLLREGEGVAARVLENLDADPSKIRS-QVIRMVGE--------------SQEAVGAA 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A + G ++ LE+F DLT +A E +DP IGR TE+ R+ QIL RRTKNNP L+G
Sbjct: 153 PGAGGAAGGSKTPTLEEFGSDLTKQAEEAKLDPCIGRVTEMTRVTQILGRRTKNNPCLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGK++IAEGLA +I +VP L KR+M+LDMGLL+AG K RGE E R+ L+ E+
Sbjct: 213 EPGVGKSSIAEGLAQKIAANDVPETLEGKRMMTLDMGLLVAGTKYRGEFEERLKKLMDEV 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ D+ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 273 KADDDIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTIDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ ++A++IL GL+E+YE HH K+T EAI AA + +YIS
Sbjct: 328 IEKDPALERRFQPVQVPEPTVDEAIQILQGLQERYELHHKLKYTDEAIVAAAKFAHQYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH 551
DR+LPDKAIDL+DEAGSR + E + KE + + K Q+ A+
Sbjct: 388 DRFLPDKAIDLIDEAGSRVRLENAALPEEAKELDKELKALLKEKDTAIRGQDFEAAGALR 447
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + + + + + ++ VE A D V DI+ + + W+GIPV +
Sbjct: 448 DKEVELKTEIQKITQAKQEENKAAVE-----AGGGDSGPTVKESDISKIVAAWTGIPVDK 502
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+++DE L+ +EE L R+IGQ+EAV A SRA++R+R GLK+PNRP A+ +F GPTGVG
Sbjct: 503 VSSDEGSQLMNMEETLHSRLIGQEEAVVACSRAIRRARTGLKNPNRPVASFIFSGPTGVG 562
Query: 672 KTELAKSLAACYFGS 686
K+ELAKS++ YFGS
Sbjct: 563 KSELAKSISQFYFGS 577
>gi|261417579|ref|YP_003251261.1| ATPase AAA [Geobacillus sp. Y412MC61]
gi|319765237|ref|YP_004130738.1| ATPase AAA [Geobacillus sp. Y412MC52]
gi|261374036|gb|ACX76779.1| ATPase AAA-2 domain protein [Geobacillus sp. Y412MC61]
gi|317110103|gb|ADU92595.1| ATPase AAA-2 domain protein [Geobacillus sp. Y412MC52]
Length = 810
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 263/612 (42%), Positives = 361/612 (58%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLIREGEGIAAKALMALGLGPDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ + + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI--------------GRGSEVSHTIHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G S+SG
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS---------------NESMSGH 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L+ DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 152 GGG---ASHVSTPTLDSLARDLTAIAREGRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH + EAI AV LS RYI+
Sbjct: 324 IEKDAALERRFQPIYVDEPTVEESIQILKGLRDRYEAHHRVSISDEAIEQAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + F + PP E + + E +
Sbjct: 384 DRFLPDKAIDLIDEACSKVRLRSF-----------TAPPKLKELEQKLEEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + + E + E V +DIAAV S W+GIPV ++
Sbjct: 433 SQEFEKAASLRDMEQRLREELEETKRAWKEKQGQENLEVTVEDIAAVVSSWTGIPVSKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L RV+GQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 ETETERLLKLEEILHSRVVGQDEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|256752490|ref|ZP_05493347.1| ATPase AAA-2 domain protein [Thermoanaerobacter ethanolicus CCSD1]
gi|256748625|gb|EEU61672.1| ATPase AAA-2 domain protein [Thermoanaerobacter ethanolicus CCSD1]
Length = 816
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 266/615 (43%), Positives = 367/615 (59%), Gaps = 57/615 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKA 137
++F RFTERA KA+ +Q EA+S + V T+H+LLGL+ ED + G+T +
Sbjct: 2 AMFGRFTERAQKALYLAQEEARSFYHNYVGTEHILLGLLKEDEGIAARVLKKLGVTYETT 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
RE V+S+ N P P KRV E ++ +R +++ E
Sbjct: 62 REKVLSLIGMGNI-----------PGDVVGYTP---RAKRVLELSLSEARRFNTSYVGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A R+L G+D N + V L E A
Sbjct: 108 HILLGLLREGEGVAARILMEQGIDFNRVREEIVKMLNEEPA---------------GGPA 152
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K A +K+ T L QF DLT A + +DPVIGRE EI+R+IQIL RRTKNNP+L+
Sbjct: 153 KAAKVKN---TNTPTLNQFGRDLTELARDGKLDPVIGREKEIERVIQILSRRTKNNPVLI 209
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI EGLA +IV+ E+P L KR+++LDM ++AG K RGE E R+ T+++E
Sbjct: 210 GEPGVGKTAIVEGLAQKIVEGEIPEILKDKRVVTLDMASMVAGTKYRGEFEDRLKTVLNE 269
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+ K+G+VILFIDE+HTLIG+G +D SN+LKP+L RGE+Q + +TT DE+R
Sbjct: 270 VIKAGNVILFIDEMHTLIGAGAA-----EGAIDASNILKPALARGEIQVVGATTLDEYRK 324
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQP+++ EP+ E+ + IL GLR+KYEAHH K T EA+ AA LS RYI
Sbjct: 325 YVERDPALERRFQPIIVDEPTVEETIEILKGLRDKYEAHHRVKITDEALEAAARLSHRYI 384
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDL+DEA SR ++ ++ PP+ E + + E +
Sbjct: 385 ADRFLPDKAIDLIDEAASRVRLK-----------TVTAPPEIKELEDKINDLIKEKEEAI 433
Query: 558 RLKYDDVVASMGDTSEIVVE------SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
R + + A + D + + E + S +E + VGP++IA V SLW+GIPV++
Sbjct: 434 RTQEYEKAAKIRDEEQKLREELEKLKAKWQQNSLSNEKS-VGPEEIAQVVSLWTGIPVKK 492
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ +E L+ LEE L +RVIGQDEAV A++RA++R+RVGLKDP RP + +F GPTGVG
Sbjct: 493 LAEEESERLLHLEEVLHERVIGQDEAVEAVARAIRRARVGLKDPKRPIGSFIFLGPTGVG 552
Query: 672 KTELAKSLAACYFGS 686
KTEL K+LA FG
Sbjct: 553 KTELTKALAEALFGD 567
>gi|229494287|ref|ZP_04388050.1| ATPase family protein protein [Rhodococcus erythropolis SK121]
gi|453067540|ref|ZP_21970827.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
qingshengii BKS 20-40]
gi|226183250|dbj|BAH31354.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
[Rhodococcus erythropolis PR4]
gi|229318649|gb|EEN84507.1| ATPase family protein protein [Rhodococcus erythropolis SK121]
gi|452766831|gb|EME25074.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
qingshengii BKS 20-40]
Length = 847
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 259/613 (42%), Positives = 368/613 (60%), Gaps = 49/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ G R + +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPTETGGTRGEAGTPS 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T+ + L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 165 TSLV----------LDQFGRNLTQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQAIVNGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 330 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDRIADARREKESAID 438
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D + +V A D D A V + IA V W+GIPV ++T
Sbjct: 439 AQDFEKAANLRDKEKTLVAQRAEREKQWRAGDLDVIAEVDDEQIAEVLGNWTGIPVFKLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ+EAV ++S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 499 EEETTRLLRMEEELHKRIIGQEEAVKSVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 558
Query: 674 ELAKSLAACYFGS 686
ELAKSLA FG
Sbjct: 559 ELAKSLANFLFGD 571
>gi|288554696|ref|YP_003426631.1| class III stress response-related ATPase [Bacillus pseudofirmus
OF4]
gi|288545856|gb|ADC49739.1| class III stress response-related ATPase [Bacillus pseudofirmus
OF4]
Length = 813
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/613 (42%), Positives = 365/613 (59%), Gaps = 56/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F R TERA K + +Q EA LG + + T+H+LLGLI E GI A +A
Sbjct: 2 MFGRLTERAQKVLALAQEEAIRLGHNNIGTEHVLLGLIREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ + + GK + + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LQALGLGSEKIQKEVETLIGKGQEGSKTIHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G N + +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS----------------NEVGSSSQ 152
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
S L+ DLTA A EE +DPVIGR EI+R+IQ+L RRTKNNP+L+GE
Sbjct: 153 QGGSATHANTPTLDSLARDLTAIAREESLDPVIGRSKEIERVIQVLSRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA IV EVP L +KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 213 GVGKTAIAEGLAQAIVANEVPETLRNKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 273 AGNVILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ ++EP+ E+++ IL GLR++YEAHH T EAI +V +S RYISDR
Sbjct: 328 KDAALERRFQPIQVNEPTLEESILILKGLRDRYEAHHRVTITDEAIEESVKMSDRYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E R + E + +
Sbjct: 388 FLPDKAIDLIDEAASKVRLRSY-----------TAPPNLKELEGRLEETRKEKDAAVQSQ 436
Query: 561 YDDVVASMGDTSEIVV--------ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ AS+ DT + + E +D E V +DIA V + W+GIPV ++
Sbjct: 437 EFEKAASLRDTEQRLREELEEMKNEWKKKQGQEDTEVVV---EDIAQVVASWTGIPVSKL 493
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +E+ L +RV+GQ+EAV +IS+AV+R+R GLKDP RP + +F GPTGVGK
Sbjct: 494 AEEETERLLKMEKILHERVVGQEEAVISISKAVRRARAGLKDPKRPIGSFIFLGPTGVGK 553
Query: 673 TELAKSLAACYFG 685
TELA+++A FG
Sbjct: 554 TELARAVAETLFG 566
>gi|313893296|ref|ZP_07826871.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
oral taxon 158 str. F0412]
gi|313442192|gb|EFR60609.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
oral taxon 158 str. F0412]
Length = 815
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/612 (42%), Positives = 360/612 (58%), Gaps = 55/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGL--IAEDRHPNGFLESGITIDKAR 138
+ +RFT+ K + +Q A LG D V T+H+L+GL + E GI +
Sbjct: 1 MMQRFTDDTQKVLSLAQEAALELGHDYVGTEHVLIGLTKVKNSVAAKALEELGIVTENIF 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
EAV +D +G +++ M + K + E AV+ + +N++ EH
Sbjct: 61 EAV------------EDHVGRGNKKATSIYMTPRV--KYILELAVQMANRMNHNYVGTEH 106
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL + G A +L+ + V N + A+ + G +K G
Sbjct: 107 ILLGLLSDGSGVAAAILQSMDVRTNDVVD-AIRNILGSNSK-----------------GH 148
Query: 259 TAALKSP-GRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ P G L F DL A + IDPVIGR+TEIQR+IQIL RRTKNNP+L+
Sbjct: 149 NDGQEGPNGDGELGDLSDFATDLNEYAKQGKIDPVIGRDTEIQRVIQILSRRTKNNPVLI 208
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RIV VP L +KRI+SL +G ++AGAK RGE E R+ I E
Sbjct: 209 GEPGVGKTAIAEGLAQRIVTGNVPEILRNKRIISLSIGAMLAGAKYRGEFEERLKKAIDE 268
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+Q+ D+I+FIDE+HTL+G+G +G +D +N+LKP+L RGE Q I +TT DE++
Sbjct: 269 VQQHDDMIIFIDEIHTLVGAG----ATEG-AMDAANILKPALARGEFQVIGATTLDEYKK 323
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EP++EDA+ IL GLR++YEA H K T EA+ AAV LS+RYI
Sbjct: 324 HIEKDAALERRFQPVQVGEPNEEDALEILKGLRDRYEAFHKAKITDEALKAAVSLSSRYI 383
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAID+VDEA S+ +++F S PD E R +E
Sbjct: 384 TDRFLPDKAIDVVDEAASKVRMQVF-----------STAPDVKALEERLKVVKNEKEAAV 432
Query: 558 RLKYDDVVASMGDTSEIVVE--SSLPSAS--DDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + D + +V+ S SA+ + D+ VV DDIAAV + W+GIPV +I
Sbjct: 433 TSQDFEKAAKLRDEEKTLVKDISDKKSAAKEESDQKLVVTEDDIAAVVAQWTGIPVAKIA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LE++L KRV+GQD+AV A+++AV+R+R GLKDP RP + LF GPTGVGKT
Sbjct: 493 EAESETLLHLEKELHKRVVGQDDAVTAVAKAVRRARAGLKDPKRPIGSFLFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA+ FG
Sbjct: 553 ELARALASSLFG 564
>gi|441508083|ref|ZP_20990008.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
aichiensis NBRC 108223]
gi|441448010|dbj|GAC47969.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
aichiensis NBRC 108223]
Length = 848
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/612 (41%), Positives = 372/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P + + L+QF +LTA A+E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 SSESGTP--STSLVLDQFGRNLTAAAAEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGQVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE HH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYETHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDERIADARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVNERAEREKQWRSGDMDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|403721633|ref|ZP_10944535.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
rhizosphera NBRC 16068]
gi|403207043|dbj|GAB88866.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
rhizosphera NBRC 16068]
Length = 848
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/612 (41%), Positives = 371/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 STESGTP--STSLVLDQFGRNLTAAAGEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGQVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE+HH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYESHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDRIAEARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAARLRDKEKQLVNERADREKQWRSGDMDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|366163201|ref|ZP_09462956.1| ATPase AAA-2 [Acetivibrio cellulolyticus CD2]
Length = 810
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/623 (42%), Positives = 364/623 (58%), Gaps = 75/623 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
++ RFTE+A KAV SQ A +LG + V T+HLLLGLI E GIT DK
Sbjct: 1 MYGRFTEKAEKAVSLSQESAMTLGHNYVGTEHLLLGLIKEGSGVAAKVLQNQGITEDKVL 60
Query: 139 ---EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
E ++ ST Q + F+ TKRV E + +R G+N+I
Sbjct: 61 KEIEELIGHGDSTGEQ----------------PLGFTPRTKRVLELSFREARRMGHNYIG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ +G+ + A R+L LG++ L + V E P + + N+
Sbjct: 105 TEHLLVGILKEGESVAVRILMDLGLEPQKLYSEVVKMFSEEA------PGTSGVPKNNAT 158
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S T L QF DLT A E DPVIGR+ EI+R+IQIL RRTKNNP
Sbjct: 159 SSNTPTLN-----------QFGRDLTDMAREAKFDPVIGRDKEIERVIQILSRRTKNNPC 207
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA +IV+ +P L KR+++LD+ ++AGAK RGE E R+ +
Sbjct: 208 LIGEPGVGKTAIAEGLAQKIVEGNIPEMLKDKRVVTLDLSSMVAGAKYRGEFEERLKKAL 267
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+K+G+VILFIDE+HT+IG+G +D SN+LKPSL RGE+Q I +TT DE+
Sbjct: 268 EEIKKAGNVILFIDEMHTIIGAGAA-----EGAIDASNILKPSLARGEIQVIGATTLDEY 322
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EPS+E+A+ IL G+R+KYEAHH K T EA+ AAV LS R
Sbjct: 323 RKHIEKDAALERRFQPITVGEPSKEEAIEILKGVRDKYEAHHRVKITDEALVAAVKLSDR 382
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI++R+LPDKAIDL+DEA SR ++ F + PPD ++ + E V+
Sbjct: 383 YITERFLPDKAIDLIDEAASRVRLKSF-----------TAPPD--------LKQLEEQVE 423
Query: 556 GSRLKYDDVV-------ASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVAS 602
R + +D + A+ E +++ L A +D + V +++A + +
Sbjct: 424 KLRKEKEDSIICQEFEKAARIRDEEQRLKNELDKAKNDWQQKNQTTTDTVTEEEVAGIVA 483
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
W+GIPV+++ +E L+ +EE L RVIGQ+EAV AIS+A++R RVGLKDP RP +
Sbjct: 484 DWTGIPVKRLAEEESERLMKMEETLHNRVIGQEEAVKAISKAIRRGRVGLKDPKRPVGSF 543
Query: 663 LFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTEL+K+LA FG
Sbjct: 544 IFLGPTGVGKTELSKALAEALFG 566
>gi|403238378|ref|ZP_10916964.1| Class III stress response-related ATPase, ClpC [Bacillus sp.
10403023]
Length = 814
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/613 (43%), Positives = 368/613 (60%), Gaps = 57/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGLI E G I
Sbjct: 2 MFGRFTERAQKVLALAQEEAVRLGHNNIGTEHVLLGLIRE----------GEGIAAKALL 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + ++ + +G+ S + ++ K+V E +++ +R G++++ EHI
Sbjct: 52 ALGLGPEKIQKEVEALIGRGQEGSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G + G +A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG-----------SNESSSGHHGGGSA 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E+++ IL GLR++YEAHH + E+I AV LS RYISDR
Sbjct: 327 KDAALERRFQPIQVDEPTVEESILILKGLRDRYEAHHRVSISDESIIQAVKLSDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQGS 557
+LPDKAIDL+DEAGS+ + + + PP+ + Q++ V+ + VQ
Sbjct: 387 FLPDKAIDLIDEAGSKVRLRSY-----------TAPPNLKELEQKLEEVRKEKDAAVQSQ 435
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ AS+ D+ + + E + + E + V DDIA V S W+G+PV ++
Sbjct: 436 EF---EKAASLRDSEQRLREQLEETKKNWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKL 492
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
E L+ +EE L RVIGQ+EAV A+S+AV+RSR GLKDP RPT + +F GPTGVGK
Sbjct: 493 AQTEADKLLNMEEILHSRVIGQEEAVKAVSKAVRRSRAGLKDPKRPTGSFIFLGPTGVGK 552
Query: 673 TELAKSLAACYFG 685
TELA++LA FG
Sbjct: 553 TELARALAESIFG 565
>gi|416998781|ref|ZP_11939450.1| negative regulator of genetic competence ClpC/MecB [Veillonella
parvula ACS-068-V-Sch12]
gi|333976934|gb|EGL77793.1| negative regulator of genetic competence ClpC/MecB [Veillonella
parvula ACS-068-V-Sch12]
Length = 815
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 259/618 (41%), Positives = 365/618 (59%), Gaps = 67/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGL--IAEDRHPNGFLESGITIDKAR 138
+ +RFT+ A + + ++ A LG D V T+H+L+GL + E G+ +
Sbjct: 1 MMQRFTDDAQRVLSLAEEAALELGHDYVGTEHVLIGLTKVKNGVAAKALEELGLVTEDIF 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
EAV G+ A + + K V E A++ + +N++ EH
Sbjct: 61 EAV--------------EEHVGRGNKKATSIYMTPRVKHVLELAIQVANQMNHNYVGTEH 106
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL + G A +L+ + + N + A+ + G + +G +G+ N+ G+
Sbjct: 107 ILLGLLSDGSGVAVAILRAMNIRSNDVVE-AIRSILG--SNKGSNNGGQEGINSNNDLGE 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L F DL A + IDPVIGR+TEIQR+IQIL RRTKNNP+L+G
Sbjct: 164 --------------LSDFATDLNESAKQGKIDPVIGRDTEIQRVIQILSRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV VP L +KRI+SL +G ++AGAK RGE E R+ I E+
Sbjct: 210 EPGVGKTAIAEGLAQRIVTDNVPEILRNKRIISLSIGSMLAGAKYRGEFEERLKKAIDEV 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
Q+ D+I+FIDE+HTL+G+G +G +D +N+LKP+L RGE Q I +TT DE++
Sbjct: 270 QQHDDMIIFIDEIHTLVGAG----ATEG-AMDAANILKPALARGEFQVIGATTLDEYKKY 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP++EDA+ IL GLR++YEA H K T EA+ AAV LS+RYI+
Sbjct: 325 IEKDAALERRFQPVQVGEPNEEDALEILKGLRDRYEAFHKAKITDEALTAAVSLSSRYIT 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR--TVQAMHEVV-- 554
DR+LPDKAID+VDEA S+ +++F S PD E R TV+ E
Sbjct: 385 DRFLPDKAIDVVDEAASKVRMKVF-----------SSAPDVKALEDRLNTVKKEKEAAVT 433
Query: 555 -----QGSRLKYDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
+ ++L+ ++ ++ +GD I E S D+ +V +DIAAV + W+GI
Sbjct: 434 SQDFEKAAKLRDEEQLLLKEIGDKKSIAKEKS-------DQKLIVTEEDIAAVVAQWTGI 486
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV +I +E L+ LEE+L KRV+GQDEAV A+++AV+R+R GLKDP RP + LF GP
Sbjct: 487 PVAKIAEEESATLLHLEEELHKRVVGQDEAVTAVAKAVRRARAGLKDPKRPIGSFLFLGP 546
Query: 668 TGVGKTELAKSLAACYFG 685
TGVGKTELA++LA+ FG
Sbjct: 547 TGVGKTELARALASSLFG 564
>gi|134097027|ref|YP_001102688.1| ATP-dependent Clp protease [Saccharopolyspora erythraea NRRL 2338]
gi|133909650|emb|CAL99762.1| putative ATP-dependent Clp protease [Saccharopolyspora erythraea
NRRL 2338]
Length = 853
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 259/617 (41%), Positives = 378/617 (61%), Gaps = 59/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG---YQGKEPAEAGGRGEGTPSS- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+RI+Q+L RRTKNNP+L+G
Sbjct: 164 -----------SLVLDQFGRNLTQSARESKLDPVIGREKEIERIMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E+GVGKTA+ EGLA ++V+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EAGVGKTAVVEGLAQKVVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 273 KTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLEEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ +A L+ RYI+
Sbjct: 328 VEKDPALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDGALVSAATLADRYIN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV-- 554
DR+LPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADVRRDKESAID 436
Query: 555 -----QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ +RL+ D+ +G E A D D A V + IA V + W+GIPV
Sbjct: 437 AQDFERAARLR-DEEKQLLGQKDE---REKQWKAGDLDVVAEVDDEQIAEVLANWTGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQD+AV A+S+A++R+R GLKDP RP+ + +F GP+G
Sbjct: 493 FKLTEEETTRLLRMEDELHKRIIGQDDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFGD 569
>gi|340793465|ref|YP_004758928.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
variabile DSM 44702]
gi|340533375|gb|AEK35855.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
variabile DSM 44702]
Length = 874
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 262/620 (42%), Positives = 373/620 (60%), Gaps = 45/620 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA++L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARALNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I + G P S +PF+ K+V E A+ + G+ +I EH
Sbjct: 61 TEVEDIIGTG-----------GHPPS--GYIPFTPRAKKVLELALREALQLGHKYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG- 257
I LGL +G A +VL +LG D++ + + L G EG EP + E + +G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLSRVRQQVIQLLSG---YEGGEPESEQASDEPAGAGV 164
Query: 258 ------KTAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT 310
+A PG+ S L+QF +LT A + +DPV+GR EI+RI+Q+L RRT
Sbjct: 165 GPGDGAPSAPSGKPGQKSNSLVLDQFGRNLTQAAKDGKLDPVVGRGKEIERIMQVLSRRT 224
Query: 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370
KNNP+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R
Sbjct: 225 KNNPVLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEER 284
Query: 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430
+ ++ EI + GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +T
Sbjct: 285 LKKVLKEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGAT 339
Query: 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490
T DE+R EKD AL RRFQPV + EPS E V IL GLR++YEAHH T A+ AA
Sbjct: 340 TLDEYRKHIEKDAALERRFQPVQVPEPSVEMTVEILKGLRDRYEAHHRVSITDGALAAAA 399
Query: 491 HLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM 550
LS RYI+DR+LPDKA+DL+DEAG+R I K Q DD E+R +
Sbjct: 400 RLSDRYINDRFLPDKAVDLIDEAGARMRIRRMTAPKAIQDV------DDKIAEVRRAKEA 453
Query: 551 ----HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
+ + + L+ D+ S E + A + D+ A +G +IA V W+G
Sbjct: 454 AIDDQDFEKAASLRDDERQLS----EERAEKEKQWRAGELDDVAEIGEQEIAEVLGAWTG 509
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV Q+T +E L+ +E++L +R+IGQ++AV A+SRA++R+R GLKDP RP+ + +F G
Sbjct: 510 IPVVQLTEEETTRLLHMEDELHERIIGQEDAVKAVSRAIRRTRAGLKDPKRPSGSFIFAG 569
Query: 667 PTGVGKTELAKSLAACYFGS 686
P+GVGKTEL+K+LA FG
Sbjct: 570 PSGVGKTELSKALAEFLFGD 589
>gi|289433587|ref|YP_003463459.1| ClpC ATPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289169831|emb|CBH26369.1| ClpC ATPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 820
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/636 (41%), Positives = 368/636 (57%), Gaps = 65/636 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E G++ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGVSSEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEG-AIDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS E++++IL GLR++YEAHH T EA++AAV LS RYIS
Sbjct: 323 IEKDAALERRFQPIKVDEPSVEESIQILHGLRDRYEAHHRVAITDEALDAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDD--YWQEIRTVQAMH 551
DR+LPDKAID++DEAGS+ ++ F K KE + + L K D QE A+
Sbjct: 383 DRFLPDKAIDVIDEAGSKVRLKSFTTPKNVKEMENNLTDLKKEKDAAVQGQEFEKAAAL- 441
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
R K + S+ +T E S+ V D +A V + W+GIPV +
Sbjct: 442 ------RDKEHKLKKSLEETKANWKEKQGLDHSE------VTEDIVAEVVASWTGIPVAK 489
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +F GPTGVG
Sbjct: 490 LAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVG 549
Query: 672 KTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
KTELA++LA FG +RI + F++ ++
Sbjct: 550 KTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 585
>gi|377561326|ref|ZP_09790784.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
otitidis NBRC 100426]
gi|377521514|dbj|GAB35949.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
otitidis NBRC 100426]
Length = 848
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/612 (41%), Positives = 372/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P + + L+QF +LTA A+E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 SSESGTP--STSLVLDQFGRNLTAAAAEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGQVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE HH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYETHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDERIADARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVNERAEREKQWRSGDMDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|300742477|ref|ZP_07072498.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Rothia
dentocariosa M567]
gi|300381662|gb|EFJ78224.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Rothia
dentocariosa M567]
Length = 850
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 259/617 (41%), Positives = 374/617 (60%), Gaps = 56/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI E LES G+T++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHLLLGLIHEGEGIGARALESLGVTLNAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V SI + P + + +PF+ K+V E ++ + + +I EH
Sbjct: 61 EQVQSIVGPS-------------PQAPSGHIPFTPRAKKVLELSMREAIQLNHGYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LG+ +G A +VL ++GV + + + G G EN +
Sbjct: 108 ILLGMVRASEGVANQVLSKVGVQGAEVRQAVMDLISG-----------YPGNNENKETAG 156
Query: 259 TAALKSPGRTRASA--LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
A S T A + L+QF +LTA A E +DPVIGR E++R++Q+L RRTKNNP+L
Sbjct: 157 VGAGNSREGTPAGSTILDQFGRNLTAAAREGQLDPVIGRHHEMERVMQVLSRRTKNNPVL 216
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+ EGLA IV +VP L K + +LD+G L+AG++ RG+ E R+ ++
Sbjct: 217 IGEPGVGKTAVVEGLAQAIVHGDVPETLKDKHLYTLDLGSLVAGSRYRGDFEERLKKVLK 276
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 EIRTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYR 331
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+ + EPSQ+ AV+IL G+R+KYEAHH T E+I AAV+L+ARY
Sbjct: 332 KHIEKDAALERRFQPIQVDEPSQDLAVQILKGVRDKYEAHHRVTITDESIEAAVNLAARY 391
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAMH 551
ISDR+LPDKA+DL+DEAG+R I KR ++ PP D+ ++RT +
Sbjct: 392 ISDRFLPDKAVDLIDEAGARLRI---KR--------MTAPPEIKILDEKASKLRTQK--E 438
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSAS---DDDEPAVVGPDDIAAVASLWSGIP 608
+ ++G Y+ A +++ E + + + D V P+ I+ V + +G+P
Sbjct: 439 DAIKGQ--DYEKAAALRDQEQKVLAEKAEAEKAWRENGDAFGEVTPEVISEVLASSTGVP 496
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V +IT +E L+ +E++L KRVIGQD A+ A+SRA++R+R GLKDP RP + +F GPT
Sbjct: 497 VYKITEEESSRLIKMEDELHKRVIGQDNAIKALSRAIRRTRAGLKDPRRPGGSFIFAGPT 556
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTELAK+LA FG
Sbjct: 557 GVGKTELAKALAEFLFG 573
>gi|389816088|ref|ZP_10207275.1| Class III stress response-related ATPase, ClpC [Planococcus
antarcticus DSM 14505]
gi|388465352|gb|EIM07670.1| Class III stress response-related ATPase, ClpC [Planococcus
antarcticus DSM 14505]
Length = 818
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 269/616 (43%), Positives = 365/616 (59%), Gaps = 63/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFT+RA K + +Q EA + + + T+H+LLGLI E G KA EA
Sbjct: 1 MFNRFTQRAQKVLQLAQEEAIRMKHESIGTEHILLGLIRE---------GGGIAAKALEA 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMP---FSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ N Q ++ + P ++ K+V E +V+ SR G+++I E
Sbjct: 52 I-----EVNTQLIEEGVKELVGVGEKDVGPIVHYTPRAKKVIELSVDESRKLGHSYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG--ELAKEGREPSLAKGVRENSI 255
H+ L L +G A RVL GV +N A V +L G E A G P+
Sbjct: 107 HLLLALIREGEGVAARVLGNAGVSLNK-ARQQVLQLLGSNEQASTGTSPN---------- 155
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
A+ +P L+ DLT A E +DPVIGR EI R+I++L RRTKNNP+
Sbjct: 156 ----ASANTP------TLDGLARDLTQVAREGGLDPVIGRSDEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA +IV E+P L KR+M LDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQQIVNNEIPETLRDKRVMVLDMGTVVAGTKYRGEFEDRLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+++G+VILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+
Sbjct: 266 DEIRQAGNVILFIDELHTLIGAG----GAEG-AIDASNILKPSLSRGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EPS E++++I+ GLR++YEAHH K T EAI AA +S R
Sbjct: 321 RKYIEKDAALERRFQPIQVDEPSVEESIQIIRGLRDRYEAHHRVKITDEAIEAAAKMSDR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YISDR+LPDKAIDL+DEAGS+ + + + PPD E R A E +
Sbjct: 381 YISDRFLPDKAIDLIDEAGSKVRLRSY-----------TIPPDLKELESRLEAARSEKNE 429
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPV 609
+ + + AS+ D +E +++ L + E + V +DIA V S+W+GIPV
Sbjct: 430 AVQSQEFEKAASLRD-AEQKLQNQLDKTKKEWKEKQGKEESEVTVEDIAKVVSMWTGIPV 488
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++ E L+ LE L RVIGQDEAV +IS+A++R+R GLKDP RP + +F GPTG
Sbjct: 489 SKLAQTESDKLLNLEAILHNRVIGQDEAVTSISKAIRRARAGLKDPKRPIGSFIFLGPTG 548
Query: 670 VGKTELAKSLAACYFG 685
VGKTELA++LA FG
Sbjct: 549 VGKTELARALAESMFG 564
>gi|348026597|ref|YP_004766402.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Megasphaera
elsdenii DSM 20460]
gi|341822651|emb|CCC73575.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Megasphaera
elsdenii DSM 20460]
Length = 810
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 265/607 (43%), Positives = 359/607 (59%), Gaps = 53/607 (8%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL--ESGITIDKAREAV 141
R T A + ++Q A+ D V T+H+LLGL+ G L + G+T + A+
Sbjct: 5 RLTNDAKAVLQYAQEAAQKFHHDYVGTEHILLGLVLNTDGIAGLLLNQLGLTPENVTRAI 64
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
H QDT +K+ + TKR E AV + N++ EH+
Sbjct: 65 EQ--HVGWGQDT------------PSKLRLTPRTKRAMELAVREANRLEQNYVGTEHMLA 110
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
G+ G A ++L+ + +D + L + +S L + A EG + AK
Sbjct: 111 GILEEGSGMAVQILEDMDIDPD-LVSQRLSELMNDPAVEGGDAVAAKN------------ 157
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
S L QF DL A + IDPVIGRE EI R+IQIL RRTKNNP+L+G G
Sbjct: 158 --------GSDLSQFGRDLNEWAKKGKIDPVIGREKEISRVIQILSRRTKNNPVLIGAPG 209
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA RI+ VP LL KRI SLD+ ++AG K RGE E R+ ++ I++
Sbjct: 210 VGKTAIAEGLAQRIINGNVPDSLLDKRIFSLDLASIVAGTKYRGEFEERIKRILDVIEQD 269
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
+ILFIDE+H LIG+G V +D +N+LKP+L RG+LQCI +TT DE++ FEK
Sbjct: 270 DTIILFIDEIHQLIGAGAVE-----GAMDAANILKPALARGDLQCIGATTIDEYKKHFEK 324
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D ALARRFQPVL+ EP+++DA+ IL GLR++YEA H + T +A+ AAV LSARYISDRY
Sbjct: 325 DAALARRFQPVLVGEPTEDDAMAILFGLRDRYEAFHKARITDDAVRAAVKLSARYISDRY 384
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561
LPDKAID++DEA +R ++++ E Q L + D +E A + + + L+
Sbjct: 385 LPDKAIDVMDEAAARVRMKVYAPSHELQD--LEQKLADINKEKEAALAGEDFEKCASLRD 442
Query: 562 DDVVASMGDTSEIVVESSL--PSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERML 619
A +SEI S+L DDE VV +DIA V S+W+G+PVQQIT E
Sbjct: 443 ----AGKKVSSEI---SALQKEKKQHDDEKLVVTENDIADVVSMWTGVPVQQITETESQR 495
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ LEE+L KRVI QD+AV A+++AV+R+R GLKD NRP + LF GP+GVGKTELA++L
Sbjct: 496 LLHLEEELHKRVISQDDAVTAVAKAVRRARAGLKDANRPIGSFLFLGPSGVGKTELARTL 555
Query: 680 AACYFGS 686
AA FGS
Sbjct: 556 AAQLFGS 562
>gi|262200860|ref|YP_003272068.1| ATPase AAA [Gordonia bronchialis DSM 43247]
gi|262084207|gb|ACY20175.1| ATPase AAA-2 domain protein [Gordonia bronchialis DSM 43247]
Length = 848
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/612 (41%), Positives = 372/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 SSESGTP--STSLVLDQFGRNLTAAAGEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGQVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE+HH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYESHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDERIADARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVAERAEREKQWRSGDMDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|258513609|ref|YP_003189831.1| ATPase AAA-2 domain-containing protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257777314|gb|ACV61208.1| ATPase AAA-2 domain protein [Desulfotomaculum acetoxidans DSM 771]
Length = 810
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 256/615 (41%), Positives = 359/615 (58%), Gaps = 56/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F++FTERA K + +Q EAK + + T+HLLLGLI E + + ID
Sbjct: 1 MFDKFTERAKKVFVLAQDEAKRMATPYIGTEHLLLGLIREGEGVAAKVLESLNIDA---- 56
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
T Q GK A +M + K+V E A+ +RS G+N++ EH+
Sbjct: 57 ------ETVRQAVGQLVGPGK--GVAQEMFLTPRGKKVLELAIAEARSLGHNYVGTEHLL 108
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL + +G A +VL LG D+ + ++ + L + + SG+
Sbjct: 109 LGLISEGEGVAAQVLNALGADIEQVRSMIMQML-----------GGGQSSQGGCASGQCG 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ G + AL+++ DLT A E+ +DPV+GRE EI+R+IQ+L RRTKNNP+LLG+
Sbjct: 158 S--KAGNVQTKALDEYGRDLTEMAREDKLDPVVGREKEIERVIQVLSRRTKNNPVLLGDP 215
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTA+ EGLA RI VP LLSKR++SLD+ L+AG K RGE E R+ + EI K
Sbjct: 216 GVGKTAVVEGLAQRISSGNVPETLLSKRVVSLDLAALVAGTKYRGEFEDRLKKVTQEITK 275
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+++LFIDE+HTLIG+G +D +N+LKP+L RGE+QCI +TT DE+R E
Sbjct: 276 AGNIVLFIDELHTLIGAGAA-----EGAIDAANILKPALARGEMQCIGATTLDEYRKYIE 330
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + E + E+ + IL GLR++YEAHH + + EA+ A L+ RYISDR
Sbjct: 331 KDAALERRFQPINVEEATVEETIAILKGLRDRYEAHHRVRISDEALVNAAKLADRYISDR 390
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA SR + F + PPD E +T + E + +
Sbjct: 391 FLPDKAIDLMDEASSRVRMLAF-----------TAPPDLKDLERKTEKVRKEKEEAINSQ 439
Query: 561 YDDVVASMGDTSEIVVESSLPSASDDDEPA----------VVGPDDIAAVASLWSGIPVQ 610
+ A + D E SL +D A V +DIA V + W+GIPV+
Sbjct: 440 EFEKAARLRDQ-----EQSLKKELEDRREAWNLTKGGNELAVSEEDIAHVVASWTGIPVK 494
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++ +E L+ +EE L +RVIGQ+EAV A+SRAV+R+R GLKDP RP + +F GPTGV
Sbjct: 495 KLAEEESDRLLKMEEILHQRVIGQEEAVRAVSRAVRRARAGLKDPGRPVGSFIFLGPTGV 554
Query: 671 GKTELAKSLAACYFG 685
GKTELA++LA FG
Sbjct: 555 GKTELARALAEALFG 569
>gi|16799341|ref|NP_469609.1| endopeptidase Clp ATP-binding chain C [Listeria innocua Clip11262]
gi|423099292|ref|ZP_17086999.1| negative regulator of genetic competence ClpC/MecB [Listeria
innocua ATCC 33091]
gi|16412693|emb|CAC95497.1| endopeptidase Clp ATP-binding chain C [Listeria innocua Clip11262]
gi|370794190|gb|EHN61972.1| negative regulator of genetic competence ClpC/MecB [Listeria
innocua ATCC 33091]
Length = 820
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/636 (41%), Positives = 368/636 (57%), Gaps = 65/636 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E GI+ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A EE +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREENLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH T EA+ AAV LS RYIS
Sbjct: 323 IEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDD--YWQEIRTVQAMH 551
DR+LPDKAID++DE+GS+ ++ F K KE + + L K D QE A+
Sbjct: 383 DRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLSELKKEKDAAVQGQEFEKAAALR 442
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ Q + ++ A+ + + + + V D +A V + W+GIPV +
Sbjct: 443 DKEQKLKKSLEETKANWQEKQGL-------------DHSEVTEDIVAEVVASWTGIPVAK 489
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +F GPTGVG
Sbjct: 490 LAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVG 549
Query: 672 KTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
KTELA++LA FG +RI + F++ ++
Sbjct: 550 KTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 585
>gi|239825665|ref|YP_002948289.1| ATPase AAA [Geobacillus sp. WCH70]
gi|239805958|gb|ACS23023.1| ATPase AAA-2 domain protein [Geobacillus sp. WCH70]
Length = 811
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 263/612 (42%), Positives = 364/612 (59%), Gaps = 55/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ +K +
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLIREGEGIAAKALMALGLGPEKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ + + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI--------------GRGHEVSHTIHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G S+SG
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS---------------NESVSGH 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ S T L+ DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 152 SGGGASHVST--PTLDSLARDLTAIAREGRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 210 EPGVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 270 RQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKY 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH + EAI AV LS RYI+
Sbjct: 325 IEKDAALERRFQPIYVDEPTVEESIQILKGLRDRYEAHHRVSISDEAIIQAVKLSDRYIT 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + F + PP E + + E +
Sbjct: 385 DRFLPDKAIDLIDEACSKVRLRSF-----------TAPPQLKELEQKLEEVRKEKDAAVQ 433
Query: 559 LKYDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + + E + E + V +DIA V S W+GIPV ++
Sbjct: 434 SQEFEKAASLRDMEQRLREELEETKRAWKEKQGQENSEVTVEDIAMVVSSWTGIPVSKLA 493
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L RV+GQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 494 QTETERLLKLEEILHSRVVGQDEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 553
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 554 ELARALAEAMFG 565
>gi|169830395|ref|YP_001716377.1| ATPase [Candidatus Desulforudis audaxviator MP104C]
gi|169637239|gb|ACA58745.1| ATPase AAA-2 domain protein [Candidatus Desulforudis audaxviator
MP104C]
Length = 812
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 250/608 (41%), Positives = 367/608 (60%), Gaps = 41/608 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID--KAR 138
++ RFT RA K ++ +Q EA+ LG + T+HLLLGLI E + I ID K R
Sbjct: 1 MYGRFTRRAQKVIMLAQEEARKLGYPYIGTEHLLLGLIREGEGVAARALAEIKIDPRKIR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
A+ + G+ + ++ F+ K+V E +++ +R G++++ EH
Sbjct: 61 AAIEKMVEP------------GQGGGALVEVSFTPRAKKVLELSIDEARRLGHSYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +G D+ + + + L G P A+GV G+
Sbjct: 109 ILLGLIREGEGVAAQVLTGMGADLERVRHLILQFLGG--------PGPAEGV-----PGR 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ P +T L+Q+ DLTA + + +DPVIGR EI+R+IQIL RRTKNNP+L+G
Sbjct: 156 A---QQPAQTNTPNLDQYARDLTALSRDGKLDPVIGRNREIERVIQILSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTAIAEGLA RI VP L KR+++LD+ L+AG K RGE E R+ ++ EI
Sbjct: 213 DPGVGKTAIAEGLAQRISDGNVPEVLTGKRVIALDLASLVAGTKYRGEFEERLKKVLEEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+++LFIDE+HTL+G+G +D +N+LKP+L RGELQ I +TT DE+R
Sbjct: 273 RTAGNIVLFIDELHTLVGAGAA-----EGAIDAANILKPALARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQP+++ EP+ E+ + IL GLR++YEAHH + T +A+ +A LS RYI+
Sbjct: 328 VERDPALERRFQPIMVEEPTVEETIAILRGLRDRYEAHHRVRITDDALESAARLSDRYIA 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGSR ++ F E + L + ++ +E A E + ++
Sbjct: 388 DRFLPDKAIDLIDEAGSRVRLQAFTMPPELKE--LEQRVEELRKEKEAAVAAQEFEKAAQ 445
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
L+ D M + +E D+ VV DIA + S W+GIPV+++ +E
Sbjct: 446 LR--DQEQKMRAELQSSLEDWRQQKGGDE--LVVDEQDIAHIISSWTGIPVKKLAEEETE 501
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ +E+ L +RV+GQDEAV A+SRA++R+R GLKDP RP + +F GPTGVGKTELA++
Sbjct: 502 KLLRMEDLLHERVVGQDEAVRAVSRAIRRARAGLKDPRRPIGSFIFLGPTGVGKTELARA 561
Query: 679 LAACYFGS 686
L FG
Sbjct: 562 LGEALFGD 569
>gi|220927785|ref|YP_002504694.1| ATPase AAA [Clostridium cellulolyticum H10]
gi|219998113|gb|ACL74714.1| ATPase AAA-2 domain protein [Clostridium cellulolyticum H10]
Length = 810
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 259/613 (42%), Positives = 357/613 (58%), Gaps = 53/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+++RFTE+A +A+ FSQ+ A LG + V T+H+LLGL+ E + G I
Sbjct: 1 MYQRFTEKAERAIGFSQQAAVDLGHNYVGTEHILLGLVKEGTGVAARVLQGQGI------ 54
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAK-MPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ + GK + + + F+ TKRV E A + +R G +I EH+
Sbjct: 55 ------TEEKILKEIEELIGKGDAEGTQPVGFTPRTKRVLELAFKEARRMGQGYIGTEHL 108
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LG+ + A R+L LGVD L L K + E +
Sbjct: 109 LLGIMKEGESVAVRILMDLGVDPQKLLN-----------------ELVKILTEETPGSNG 151
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+A + + L QF DLT A + IDPVIGR+ EI+R+IQIL RRTKNNP L+GE
Sbjct: 152 SAKGNSSNSNTPTLNQFGRDLTDMARDGKIDPVIGRDKEIERVIQILSRRTKNNPCLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA +IV+ +P L +KR+++LD+ ++AGAK RGE E R+ + EI+
Sbjct: 212 PGVGKTAIAEGLAQKIVEGNIPEILSNKRVVTLDLSSMVAGAKYRGEFEDRLKKAMEEIR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
K+ +VILFIDE+HT++G+G +D SN+LKPSL RGE+Q I +TT +E+R
Sbjct: 272 KAANVILFIDELHTIVGAGAA-----EGAIDASNILKPSLARGEIQVIGATTLNEYRKHI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EPS+E+AV IL G+R+KYEAHH K T +A+ AAV L RYI+D
Sbjct: 327 EKDAALERRFQPITVGEPSKEEAVEILKGVRDKYEAHHRVKITDDALEAAVKLGDRYITD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEA SR ++ F + PPD E R + E R
Sbjct: 387 RFLPDKAIDLIDEAASRIRLKTF-----------TAPPDLKEMEERVEKLGKEKEDAIRC 435
Query: 560 KYDDVVASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + D E ++S L D + V DDIA + + W+GIPV+++
Sbjct: 436 QEFEKAARIRD-DEQKLKSELEKIRDQWHQKNQTKTDTVTEDDIADIVASWTGIPVRRLA 494
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E+ L KRVIGQDEAV +IS+A++R RVGLKDP RP + +F GPTGVGKT
Sbjct: 495 EEESERLLKMEDTLHKRVIGQDEAVKSISKAIRRGRVGLKDPKRPVGSFIFMGPTGVGKT 554
Query: 674 ELAKSLAACYFGS 686
EL K+LA FG
Sbjct: 555 ELCKALAEAMFGD 567
>gi|56418613|ref|YP_145931.1| ATP-dependent Clp protease ATPase [Geobacillus kaustophilus HTA426]
gi|297528454|ref|YP_003669729.1| ATPase AAA [Geobacillus sp. C56-T3]
gi|375006890|ref|YP_004980520.1| negative regulator of genetic competence [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|448236388|ref|YP_007400446.1| ATP-dependent Clp protease [Geobacillus sp. GHH01]
gi|56378455|dbj|BAD74363.1| ATP-dependent Clp protease ATPase subunit [Geobacillus kaustophilus
HTA426]
gi|297251706|gb|ADI25152.1| ATPase AAA-2 domain protein [Geobacillus sp. C56-T3]
gi|359285736|gb|AEV17420.1| Negative regulator of genetic competence [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|445205230|gb|AGE20695.1| ATP-dependent Clp protease [Geobacillus sp. GHH01]
Length = 810
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 263/612 (42%), Positives = 361/612 (58%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLIREGEGIAAKALMALGLGPDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ + + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI--------------GRGSEVSHTIHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G S+SG
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS---------------NESMSGH 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L+ DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 152 GGG---ASHVSTPTLDSLARDLTAIAREGRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH + EAI AV LS RYI+
Sbjct: 324 IEKDAALERRFQPIYVDEPTVEESIQILKGLRDRYEAHHRVSISDEAIVQAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + F + PP E + + E +
Sbjct: 384 DRFLPDKAIDLIDEACSKVRLRSF-----------TAPPKLKELEQKLEEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + + E + E V +DIAAV S W+GIPV ++
Sbjct: 433 SQEFEKAASLRDMEQRLREELEETKRAWKEKQGQENLEVTVEDIAAVVSSWTGIPVSKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L RV+GQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 ETETERLLKLEEILHSRVVGQDEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|379734094|ref|YP_005327599.1| putative ATP-dependent Clp protease ATP-binding subunit
[Blastococcus saxobsidens DD2]
gi|378781900|emb|CCG01552.1| Putative ATP-dependent Clp protease ATP-binding subunit
[Blastococcus saxobsidens DD2]
Length = 842
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/616 (42%), Positives = 374/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQAPSG-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPAAAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A ++ +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARDQKLDPVIGRAKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAAVEGLAQAIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ +SEP+ V IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVSEPTLAHTVEILKGLRDRYEAHHRISITDSALVAAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R I KR ++ PPD ++ +I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGARMRI---KR--------MTAPPDLREFDDKIAAVRREKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ DT + ++ A D D A V + IA V + W+GIPV
Sbjct: 433 SAIDAQDFEKAASLRDTEKQLLGEKAEREKQWKAGDMDVVAEVDDEQIAEVLANWTGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ+EA+ ++S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEETSRLLRMEDELHKRIIGQEEAIKSVSQAIRRTRAGLKDPRRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTELAK+LA FG
Sbjct: 553 VGKTELAKALAQFLFG 568
>gi|336180205|ref|YP_004585580.1| ATPase AAA-2 domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334861185|gb|AEH11659.1| ATPase AAA-2 domain protein [Frankia symbiont of Datisca glomerata]
Length = 834
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/617 (42%), Positives = 371/617 (60%), Gaps = 60/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQAPSG-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G K +P+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKG--DPA------------- 152
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
TA S G S L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+
Sbjct: 153 TAGAPSEGTPSTSLVLDQFGRNLTAAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLI 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 213 GEPGVGKTAVVEGLAQAIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 IRTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYI
Sbjct: 328 HLEKDAALERRFQPIQVAEPSVAHTIEILKGLRDRYEAHHRVSITDGALVAAASLADRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
SDR+LPDKAIDL+DEAGSR I ++ PPD ++ + I V+ E
Sbjct: 388 SDRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDERIANVRRDKE--- 433
Query: 556 GSRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIP 608
S + D AS+ D + ++ A D D A VG ++IA V ++W+GIP
Sbjct: 434 -SAIDAQDFEKAASLRDREKTLLAEKAKREKEWKAGDMDVVAEVGDEEIAEVLAIWTGIP 492
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T +E L+ +E++L +RVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+
Sbjct: 493 VFKLTEEETARLLRMEDELHRRVIGQQQAIKAVSQAIRRTRAGLKDPKRPGGSFIFAGPS 552
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTEL+K+LA FG
Sbjct: 553 GVGKTELSKTLAEFLFG 569
>gi|255026741|ref|ZP_05298727.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes FSL
J2-003]
Length = 585
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 263/639 (41%), Positives = 370/639 (57%), Gaps = 71/639 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E GI+ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH T EA+ AAV LS RYIS
Sbjct: 323 IEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAID++DE+GS+ ++ F K KE + + L K D
Sbjct: 383 DRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLSDLKKEKD-------------AA 429
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIP 608
VQG + AS+ D + + +S + ++ E + V D +A V + W+GIP
Sbjct: 430 VQGQEFEK---AASLRDKEQKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVASWTGIP 486
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +F GPT
Sbjct: 487 VAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPT 546
Query: 669 GVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GVGKTELA++LA FG +RI + F++ ++
Sbjct: 547 GVGKTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 585
>gi|326391133|ref|ZP_08212679.1| ATPase AAA-2 domain protein [Thermoanaerobacter ethanolicus JW 200]
gi|345018568|ref|YP_004820921.1| ATPase AAA-2 domain-containing protein [Thermoanaerobacter wiegelii
Rt8.B1]
gi|392939610|ref|ZP_10305254.1| ATPase with chaperone activity, ATP-binding subunit
[Thermoanaerobacter siderophilus SR4]
gi|325992832|gb|EGD51278.1| ATPase AAA-2 domain protein [Thermoanaerobacter ethanolicus JW 200]
gi|344033911|gb|AEM79637.1| ATPase AAA-2 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|392291360|gb|EIV99803.1| ATPase with chaperone activity, ATP-binding subunit
[Thermoanaerobacter siderophilus SR4]
Length = 816
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 266/615 (43%), Positives = 367/615 (59%), Gaps = 57/615 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKA 137
++F RFTERA KA+ +Q EA+S + V T+H+LLGL+ ED + G+T +
Sbjct: 2 AMFGRFTERAQKALYLAQEEARSFYHNYVGTEHILLGLLKEDEGIAARVLKKLGVTYETT 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
RE V+S+ N P P KRV E ++ +R +++ E
Sbjct: 62 REKVLSLIGMGNI-----------PGDVVGYTP---RAKRVLELSLSEARRFNTSYVGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A R+L G+D N + V L E A
Sbjct: 108 HILLGLLREGEGVAVRILMEQGIDFNRVREEIVKMLNEEPA---------------GGPA 152
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K A +K+ T L QF DLT A + +DPVIGRE EI+R+IQIL RRTKNNP+L+
Sbjct: 153 KAAKVKN---TNTPTLNQFGRDLTELARDGKLDPVIGREKEIERVIQILSRRTKNNPVLI 209
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI EGLA +IV+ E+P L KR+++LDM ++AG K RGE E R+ T+++E
Sbjct: 210 GEPGVGKTAIVEGLAQKIVEGEIPEILKDKRVVTLDMASMVAGTKYRGEFEDRLKTVLNE 269
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+ K+G+VILFIDE+HTLIG+G +D SN+LKP+L RGE+Q + +TT DE+R
Sbjct: 270 VIKAGNVILFIDEMHTLIGAGAA-----EGAIDASNILKPALARGEIQVVGATTLDEYRK 324
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQP+++ EP+ E+ + IL GLR+KYEAHH K T EA+ AA LS RYI
Sbjct: 325 YVERDPALERRFQPIIVDEPTVEETIEILKGLRDKYEAHHRVKITDEALEAAARLSHRYI 384
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDL+DEA SR ++ ++ PP+ E + + E +
Sbjct: 385 ADRFLPDKAIDLIDEAASRVRLK-----------TVTAPPEIKELEDKINDLIKEKEEAI 433
Query: 558 RLKYDDVVASMGDTSEIVVE------SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
R + + A + D + + E + S +E + VGP++IA V SLW+GIPV++
Sbjct: 434 RTQEYEKAAKIRDEEQKLREELEKLKAKWQQNSLSNEKS-VGPEEIAQVVSLWTGIPVKK 492
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ +E L+ LEE L +RVIGQDEAV A++RA++R+RVGLKDP RP + +F GPTGVG
Sbjct: 493 LAEEESERLLHLEEVLHERVIGQDEAVEAVARAIRRARVGLKDPKRPIGSFIFLGPTGVG 552
Query: 672 KTELAKSLAACYFGS 686
KTEL K+LA FG
Sbjct: 553 KTELTKALAEALFGD 567
>gi|431792439|ref|YP_007219344.1| chaperone ATPase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430782665|gb|AGA67948.1| ATPase with chaperone activity, ATP-binding subunit
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 827
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/619 (42%), Positives = 374/619 (60%), Gaps = 65/619 (10%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREA 140
E+FTE+A+KA+ + EA+ +G +++ T+HLLLGL+ E L G+T +K RE
Sbjct: 3 EKFTEKALKALQLAADEAQRMGSNVIGTEHLLLGLVDEGEGIAAKSLLGIGVTPEKIREQ 62
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ G+P+ A ++ + KR+ E A E +R G ++ EH+
Sbjct: 63 IGNL------------TGIGEPY--AGEVSLTPRVKRILELANEEARRHGVTYVGTEHLL 108
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ LGV + V L G+ + + G N
Sbjct: 109 LGLLMEGEGVAARVLRNLGVSPERIWKQVVQLLGGQ----PDDTPMPNGAPAN------V 158
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
K+PG + AL +F DLT +A + +DPV+GRE EI+R++Q+L RRTKNNP+L+GE
Sbjct: 159 NAKNPGPSNTPALNEFGRDLTQQARDGKLDPVVGREDEIERVVQVLSRRTKNNPVLIGEP 218
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI+ +VP L KR+++LD+ ++AG+K RGE E R+ ++ EI+
Sbjct: 219 GVGKTAIAEGLAQRIISNKVPETLAGKRVVTLDLSAVVAGSKYRGEFEERLKKVMEEIRV 278
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
G +I+FIDE+HTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 279 DGKIIVFIDELHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKYIE 333
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E A++IL GLR++YEAHH K T EAI AAV +S RYISDR
Sbjct: 334 KDPALERRFQPIKVGEPTVEQAIQILYGLRDRYEAHHRTKITDEAIEAAVKMSDRYISDR 393
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA SR + F + PPD +Q++ E ++ + +
Sbjct: 394 FLPDKAIDLMDEAASRVRLTAF-----------TAPPD--------LQSLEEKIEALKSE 434
Query: 561 YDDVVAS--------MGDTSEIVVE------SSLPSASDDDEPAVVGPDDIAAVASLWSG 606
+ V+S D + E +S S D E VV DDIA + + W+G
Sbjct: 435 KEAAVSSQEFEKAAKFRDEEHKLREELAQLRNSWESKRDVSESQVVA-DDIAQIVASWTG 493
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV+++ +E L+ LE+ L +RV+GQ++AV A+SRAV+R+R GLKDP RP + +F G
Sbjct: 494 IPVKKLAQEESERLLRLEDTLHQRVVGQEDAVKAVSRAVRRARAGLKDPKRPVGSFIFLG 553
Query: 667 PTGVGKTELAKSLAACYFG 685
PTGVGKTELA++LA FG
Sbjct: 554 PTGVGKTELARALAEALFG 572
>gi|422417724|ref|ZP_16494679.1| negative regulator of genetic competence ClpC/MecB, partial
[Listeria seeligeri FSL N1-067]
gi|313635095|gb|EFS01443.1| negative regulator of genetic competence ClpC/MecB [Listeria
seeligeri FSL N1-067]
Length = 619
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 265/636 (41%), Positives = 368/636 (57%), Gaps = 65/636 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E G++ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGVSSEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGDKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS E++++IL GLR++YEAHH T EA++AAV LS RYIS
Sbjct: 323 IEKDAALERRFQPIKVDEPSVEESIQILHGLRDRYEAHHRVAITDEALDAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDD--YWQEIRTVQAMH 551
DR+LPDKAID++DEAGS+ ++ F K KE + + L K D QE A+
Sbjct: 383 DRFLPDKAIDVIDEAGSKVRLKSFTTPKNVKEMENNLTDLKKEKDAAVQGQEFEKAAAL- 441
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
R K + S+ +T E S+ V D +A V + W+GIPV +
Sbjct: 442 ------RDKEHKLKKSLEETKANWKEKQGLDHSE------VTEDIVAEVVASWTGIPVAK 489
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +F GPTGVG
Sbjct: 490 LAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVG 549
Query: 672 KTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
KTELA++LA FG +RI + F++ ++
Sbjct: 550 KTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 585
>gi|167036769|ref|YP_001664347.1| ATPase [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167039489|ref|YP_001662474.1| ATPase [Thermoanaerobacter sp. X514]
gi|307725185|ref|YP_003904936.1| ATPase [Thermoanaerobacter sp. X513]
gi|320115191|ref|YP_004185350.1| ATPase [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166853729|gb|ABY92138.1| ATPase AAA-2 domain protein [Thermoanaerobacter sp. X514]
gi|166855603|gb|ABY94011.1| ATPase AAA-2 domain protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|307582246|gb|ADN55645.1| ATPase AAA-2 domain protein [Thermoanaerobacter sp. X513]
gi|319928282|gb|ADV78967.1| ATPase AAA-2 domain protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 816
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 266/615 (43%), Positives = 367/615 (59%), Gaps = 57/615 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKA 137
++F RFTERA KA+ +Q EA+S + V T+H+LLGL+ ED + G+T +
Sbjct: 2 AMFGRFTERAQKALYLAQEEARSFYHNYVGTEHILLGLLKEDEGIAARVLKKLGVTYETT 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
RE V+S+ N P P KRV E ++ +R +++ E
Sbjct: 62 REKVLSLIGMGNI-----------PGDVVGYTP---RAKRVLELSLSEARRFNTSYVGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A R+L G+D N + V L E A
Sbjct: 108 HILLGLLREGEGVAVRILMEQGIDFNRVREEIVKMLNEEPA---------------GGPA 152
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K A +K+ T L QF DLT A + +DPVIGRE EI+R+IQIL RRTKNNP+L+
Sbjct: 153 KAAKVKN---TNTPTLNQFGRDLTELARDGKLDPVIGREKEIERVIQILSRRTKNNPVLI 209
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI EGLA +IV+ E+P L KR+++LDM ++AG K RGE E R+ T+++E
Sbjct: 210 GEPGVGKTAIVEGLAQKIVEGEIPEILKDKRVVTLDMASMVAGTKYRGEFEDRLKTVLNE 269
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+ K+G+VILFIDE+HTLIG+G +D SN+LKP+L RGE+Q + +TT DE+R
Sbjct: 270 VIKAGNVILFIDEMHTLIGAGAA-----EGAIDASNILKPALARGEIQVVGATTLDEYRK 324
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQP+++ EP+ E+ + IL GLR+KYEAHH K T EA+ AA LS RYI
Sbjct: 325 YVERDPALERRFQPIIVDEPTVEETIEILKGLRDKYEAHHRVKITDEALEAAARLSHRYI 384
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDL+DEA SR ++ ++ PP+ E + + E +
Sbjct: 385 ADRFLPDKAIDLIDEAASRVRLK-----------TVTAPPEIKELEDKINDLIKEKEEAI 433
Query: 558 RLKYDDVVASMGDTSEIVVE------SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
R + + A + D + + E + S +E + VGP++IA V SLW+GIPV++
Sbjct: 434 RTQEYEKAAKIRDEEQKLREELEKLKAKWQQNSLSNEKS-VGPEEIAQVVSLWTGIPVKK 492
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ +E L+ LEE L +RVIGQDEAV A++RA++R+RVGLKDP RP + +F GPTGVG
Sbjct: 493 LAEEESERLLHLEEVLHERVIGQDEAVEAVARAIRRARVGLKDPKRPIGSFIFLGPTGVG 552
Query: 672 KTELAKSLAACYFGS 686
KTEL K+LA FG
Sbjct: 553 KTELTKALAEALFGD 567
>gi|217965681|ref|YP_002351359.1| negative regulator of genetic competence ClpC/mecB [Listeria
monocytogenes HCC23]
gi|290892627|ref|ZP_06555620.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
J2-071]
gi|386006961|ref|YP_005925239.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes L99]
gi|386025542|ref|YP_005946318.1| Clp endopeptidase ATP-binding subunit [Listeria monocytogenes M7]
gi|404406685|ref|YP_006689400.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2376]
gi|217334951|gb|ACK40745.1| negative regulator of genetic competence ClpC/mecB [Listeria
monocytogenes HCC23]
gi|290557936|gb|EFD91457.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
J2-071]
gi|307569771|emb|CAR82950.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes L99]
gi|336022123|gb|AEH91260.1| Clp endopeptidase ATP-binding subunit; putative ClpB [Listeria
monocytogenes M7]
gi|404240834|emb|CBY62234.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2376]
Length = 820
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 263/639 (41%), Positives = 370/639 (57%), Gaps = 71/639 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E GI+ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH T EA+ AAV LS RYIS
Sbjct: 323 IEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAID++DE+GS+ ++ F K KE + + L K D
Sbjct: 383 DRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLSELKKEKD-------------AA 429
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIP 608
VQG + AS+ D + + +S + ++ E + V D +A V + W+GIP
Sbjct: 430 VQGQEFEK---AASLRDKEQKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVASWTGIP 486
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +F GPT
Sbjct: 487 VAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPT 546
Query: 669 GVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GVGKTELA++LA FG +RI + F++ ++
Sbjct: 547 GVGKTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 585
>gi|350568861|ref|ZP_08937259.1| ATP-dependent Clp protease ATP-binding subunit ClpC
[Propionibacterium avidum ATCC 25577]
gi|348661104|gb|EGY77800.1| ATP-dependent Clp protease ATP-binding subunit ClpC
[Propionibacterium avidum ATCC 25577]
Length = 843
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/614 (41%), Positives = 372/614 (60%), Gaps = 52/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK+L + + T+HLLLGLI+E LES I+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I H T+ + +PF+ K+V E ++ + +++I E
Sbjct: 61 AQVEEIIGHGTS--------------TPTGHIPFTPRAKKVLELSLREALQMNHSYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A +VL RLG D+N + + LQG E R+ + SG
Sbjct: 107 HILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLLQGYQGDE----------RQAATSG 156
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A P ++ A+ L+QF +LT A + +DPVIGRE EI+R++ +L RRTKNNP+L+
Sbjct: 157 APEA--GPQQSSATILDQFGRNLTDAARDGELDPVIGREKEIERVMVVLSRRTKNNPVLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGK+A EGLA IV+ +VP L K+I SLD+G ++AG++ RG+ E R+ ++ E
Sbjct: 215 GEPGVGKSACVEGLAQAIVRGDVPETLRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 IKNRGDIILFIDEIHTLVGAGAA-----EGAIDAASMLKPMLARGELQTIGATTLDEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ ++EPS A+ IL GLR++YEAHH T EAI +A +L+ARYI
Sbjct: 330 YIEKDAALERRFQPIQVAEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLAARYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAG+R +I ++ PPD ++ + I V+ E
Sbjct: 390 QDRFLPDKAIDLIDEAGARMNIRR-----------MTAPPDLREFDERIAHVRVEKEAAI 438
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
++ ++ D +++ E D+ PAVVGPD+IA V S +GIPV +
Sbjct: 439 DAQ-DFERAAGLRDDEKKLLAEREAKEEEWKQGDESVPAVVGPDEIAEVLSGATGIPVFK 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E+++ KR +GQ++AV A+ R+++R+R GLKDP RP + +F GP+GVG
Sbjct: 498 LTEEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVG 557
Query: 672 KTELAKSLAACYFG 685
KTEL K+L FG
Sbjct: 558 KTELTKALTEFLFG 571
>gi|16802278|ref|NP_463763.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
EGD-e]
gi|47097423|ref|ZP_00234971.1| negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes str. 1/2a F6854]
gi|254828692|ref|ZP_05233379.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
N3-165]
gi|254913462|ref|ZP_05263474.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
J2818]
gi|254937957|ref|ZP_05269654.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes
F6900]
gi|284800527|ref|YP_003412392.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
08-5578]
gi|284993713|ref|YP_003415481.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
08-5923]
gi|386042568|ref|YP_005961373.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Listeria
monocytogenes 10403S]
gi|386045869|ref|YP_005964201.1| Clp protease ATP binding subunit [Listeria monocytogenes J0161]
gi|386049161|ref|YP_005967152.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
R2-561]
gi|386052509|ref|YP_005970067.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes
Finland 1998]
gi|404282664|ref|YP_006683561.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2372]
gi|404409465|ref|YP_006695053.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC5850]
gi|404412333|ref|YP_006697920.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC7179]
gi|405757220|ref|YP_006686496.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2479]
gi|16409597|emb|CAD00759.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
EGD-e]
gi|47014200|gb|EAL05185.1| negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes str. 1/2a F6854]
gi|258601096|gb|EEW14421.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
N3-165]
gi|258610567|gb|EEW23175.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes
F6900]
gi|284056089|gb|ADB67030.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
08-5578]
gi|284059180|gb|ADB70119.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
08-5923]
gi|293591469|gb|EFF99803.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
J2818]
gi|345532860|gb|AEO02301.1| Clp protease ATP binding subunit [Listeria monocytogenes J0161]
gi|345535802|gb|AEO05242.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Listeria
monocytogenes 10403S]
gi|346423007|gb|AEO24532.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
R2-561]
gi|346645160|gb|AEO37785.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes
Finland 1998]
gi|404229291|emb|CBY50695.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC5850]
gi|404232166|emb|CBY53569.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2372]
gi|404235102|emb|CBY56504.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2479]
gi|404238032|emb|CBY59433.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC7179]
gi|441469781|emb|CCQ19536.1| Negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes]
gi|441472917|emb|CCQ22671.1| Negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes N53-1]
Length = 820
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 263/639 (41%), Positives = 370/639 (57%), Gaps = 71/639 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E GI+ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEG-AIDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH T EA+ AAV LS RYIS
Sbjct: 323 IEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAID++DE+GS+ ++ F K KE + + L K D
Sbjct: 383 DRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLSDLKKEKD-------------AA 429
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIP 608
VQG + AS+ D + + +S + ++ E + V D +A V + W+GIP
Sbjct: 430 VQGQEFEK---AASLRDKEQKLKKSLEETKANWQEKQGLDHSEVTEDIVAEVVASWTGIP 486
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +F GPT
Sbjct: 487 VAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPT 546
Query: 669 GVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GVGKTELA++LA FG +RI + F++ ++
Sbjct: 547 GVGKTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 585
>gi|52078581|ref|YP_077372.1| class III stress response-related ATPase [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|319649145|ref|ZP_08003353.1| genetic competence ClpC/mecB negative regulatory protein [Bacillus
sp. BT1B_CT2]
gi|404487450|ref|YP_006711556.1| ATP-dependent Clp protease ClpC [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423680479|ref|ZP_17655318.1| class III stress response-related ATPase [Bacillus licheniformis
WX-02]
gi|52001792|gb|AAU21734.1| class III stress response-related ATPase [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52346444|gb|AAU39078.1| ATP-dependent Clp protease ClpC [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317388845|gb|EFV69664.1| genetic competence ClpC/mecB negative regulatory protein [Bacillus
sp. BT1B_CT2]
gi|383441585|gb|EID49294.1| class III stress response-related ATPase [Bacillus licheniformis
WX-02]
Length = 810
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 270/612 (44%), Positives = 374/612 (61%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E G++ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLSPDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ +G+ S + + ++ K+V E A++ +R G++++ EH
Sbjct: 62 KEVESLI------------GRGQEMSQS--IHYTPRAKKVTELAMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G G + SG
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGSNESGG------------AASGA 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 155 NSSANTP------TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E++++IL GLR++YEAHH T EAI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIQVDQPSPEESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + F + PP+ E + + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + VE + + + E + V DDIA V S W+G+PV +I
Sbjct: 433 SQEFEKAASLRDTEQRLREQVEETKKTWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESIFG 564
>gi|323490586|ref|ZP_08095791.1| Class III stress response-related ATPase, ClpC [Planococcus
donghaensis MPA1U2]
gi|323395678|gb|EGA88519.1| Class III stress response-related ATPase, ClpC [Planococcus
donghaensis MPA1U2]
Length = 820
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/616 (42%), Positives = 363/616 (58%), Gaps = 63/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFT+RA K + +Q EA + + + T+H+LLGLI E G KA EA
Sbjct: 2 MFNRFTQRAQKVLQLAQEEAIRMKHESIGTEHILLGLIRE---------GGGIAAKALEA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMP---FSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ N Q ++ + P ++ K+V E +V+ SR G+++I E
Sbjct: 53 I-----EVNTQLIEEGVKELVGVGEKEVGPIVHYTPRAKKVIELSVDESRKLGHSYIGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ L L +G A RVL GV +N + L G E + +G
Sbjct: 108 HLLLALIREGEGVAARVLGNAGVSLNKARQQVLQLL---------------GSNEQTSTG 152
Query: 258 KT--AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ A+ +P L+ DLT A E +DPVIGR EI R+I++L RRTKNNP+
Sbjct: 153 TSPNASANTP------TLDGLARDLTQVAREGGLDPVIGRSDEITRVIEVLSRRTKNNPV 206
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA +IV E+P L KR+M LDMG ++AG K RGE E R+ ++
Sbjct: 207 LIGEPGVGKTAIAEGLAQQIVNNEIPETLRDKRVMVLDMGTVVAGTKYRGEFEDRLKKVM 266
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+++G+VILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+
Sbjct: 267 DEIRQAGNVILFIDELHTLIGAG----GAEG-AIDASNILKPSLSRGELQCIGATTLDEY 321
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EPS E++++I+ GLR++YEAHH K T EAI AA +S R
Sbjct: 322 RKYIEKDAALERRFQPIQVDEPSVEESIQIIRGLRDRYEAHHRVKITDEAIEAAAKMSDR 381
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YISDR+LPDKAIDL+DEAGS+ + + + PPD E R A E +
Sbjct: 382 YISDRFLPDKAIDLIDEAGSKVRLRSY-----------TTPPDLKELESRLEAARSEKNE 430
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPV 609
+ + + AS+ D +E +++ L + E + V +DIA V S+W+GIPV
Sbjct: 431 AVQSQEFEKAASLRD-AEQKLQNQLDKTKKEWKEKQGKEESEVTVEDIAKVVSMWTGIPV 489
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++ E L+ LE L RVIGQ+EAV +IS+A++R+R GLKDP RP + +F GPTG
Sbjct: 490 SKLAQTESDKLLNLESILHNRVIGQNEAVTSISKAIRRARAGLKDPKRPIGSFIFLGPTG 549
Query: 670 VGKTELAKSLAACYFG 685
VGKTELA++LA FG
Sbjct: 550 VGKTELARALAESMFG 565
>gi|443315779|ref|ZP_21045253.1| ATPase with chaperone activity, ATP-binding subunit [Leptolyngbya
sp. PCC 6406]
gi|442784616|gb|ELR94482.1| ATPase with chaperone activity, ATP-binding subunit [Leptolyngbya
sp. PCC 6406]
Length = 824
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 266/636 (41%), Positives = 378/636 (59%), Gaps = 59/636 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE--DRHPNGFLESGITIDKAR 138
+FE FT A+ ++ +Q EA+ L + V T+ LLLG++ + + + + GIT++ AR
Sbjct: 1 MFEHFTNTAIAVIMKAQEEARRLQHNFVGTEQLLLGILKQGNSQAASVLADLGITLESAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V +I G P ++PF+ K+VFE A + +R ++I PEH
Sbjct: 61 QEVEAII----------GRGSGNP---PVEVPFTPKVKQVFEQAFQEARKLDADYIGPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGV-RENSISG 257
+ L L D+ A RV++ LGV L + L GE+A ++ GV R G
Sbjct: 108 LLLSLTQSDESVAYRVIENLGVPPTKLRTRLIQEL-GEVA------AVPAGVDRFERQDG 160
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K + R+S L +F D+TA A+ +DPVIGR EI+R++QIL RRTKNNP+L+
Sbjct: 161 K--------KKRSSVLAEFSTDITALAAAGKLDPVIGRALEIERVVQILGRRTKNNPVLV 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RIV +VP L KRI+SLDMGLL++G + RG+ E R+T +I E
Sbjct: 213 GEPGVGKTAIAEGLAQRIVNQDVPPELFGKRILSLDMGLLLSGTRFRGDFEERITQVIKE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+++ +IL IDE+HTL+G+G++ G D +NLLKP+L RGELQCI +TT DE R
Sbjct: 273 VREDRSIILAIDELHTLVGAGSLEGGT-----DAANLLKPALARGELQCIGATTLDEFRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQ V I+ PS + + IL GLR +YE H +A+ AA LS RYI
Sbjct: 328 YIERDAALERRFQSVRINPPSVTETIEILQGLRSRYEQFHQIVLEDDALTAAAQLSDRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
SDR+LPDKAIDL+DEAGSR + + Q L+ P + Q R V ++ ++G+
Sbjct: 388 SDRHLPDKAIDLIDEAGSRVKL------RHQ----LNYPSRELKQAFRQV---NQDLEGA 434
Query: 558 RLKYD-DVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQ 611
L+ D ++ + + ++E D D +VG DDIA + + W+G+PV +
Sbjct: 435 VLRQDFPAAGTLQEQRQQLLEEITAGQGDADSKHARRLPLVGEDDIAEIVASWTGVPVTR 494
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L+ LE+ L +RVIGQ+EAV A+SRA++RSRV L P+RP A+++F GPTGVG
Sbjct: 495 MTESEAAQLLHLEDTLHERVIGQNEAVMAVSRAIRRSRVNLSSPDRPIASLIFSGPTGVG 554
Query: 672 KTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
KTEL K+LA FGS +R+ F P K+
Sbjct: 555 KTELTKALAMALFGSEEAMIRLDMSEFMEPHTVAKL 590
>gi|334335989|ref|YP_004541141.1| ATPase AAA-2 domain-containing protein [Isoptericola variabilis
225]
gi|334106357|gb|AEG43247.1| ATPase AAA-2 domain protein [Isoptericola variabilis 225]
Length = 855
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/608 (41%), Positives = 364/608 (59%), Gaps = 41/608 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I Q P + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 TQVTEII----------GEGQQAP---SGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL ++G D+N + + L G +G+EP G +E SG
Sbjct: 108 ILLGLIREGEGVAAQVLTKMGADLNKVRQQVIQLLSG---YQGKEPVATGGPQEGQPSG- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ L+QF +LT A E +DPVIGR TEI+R++Q+L RRTKNNP+L+G
Sbjct: 164 -----------SAVLDQFGRNLTQAAREGKLDPVIGRTTEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQDIVRGDVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS E A+ IL GLR++YEAHH T A+ +A L+ RYI+
Sbjct: 328 VEKDPALERRFQPIQVAEPSLEHAIEILKGLRDRYEAHHRVSITDSALVSAATLADRYIN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAG+R I E + +E + E G R
Sbjct: 388 DRYLPDKAIDLIDEAGARLRIRRMTAPPELKVLDEEIAEARREKESAIDEQDFEKAAGLR 447
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
K + D + L S ++ DE IA V ++ +GIPV ++T +E
Sbjct: 448 DKEKQLTQKRADKEKAWKSGDLDSVAEVDEEL------IAEVLAMSTGIPVVKLTEEESS 501
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ +E++L KRV+GQ++A+ A+S+A++R+R GLKDP RP + +F GPTGVGKTELAK+
Sbjct: 502 RLLHMEDELHKRVVGQEQAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPTGVGKTELAKA 561
Query: 679 LAACYFGS 686
LA FG
Sbjct: 562 LAEFLFGD 569
>gi|395237684|ref|ZP_10415722.1| putative ATP-dependent Clp protease ATP-binding subunit [Turicella
otitidis ATCC 51513]
gi|423351385|ref|ZP_17329036.1| hypothetical protein HMPREF9719_01331 [Turicella otitidis ATCC
51513]
gi|394487003|emb|CCI83810.1| putative ATP-dependent Clp protease ATP-binding subunit [Turicella
otitidis ATCC 51513]
gi|404386569|gb|EJZ81723.1| hypothetical protein HMPREF9719_01331 [Turicella otitidis ATCC
51513]
Length = 925
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 261/617 (42%), Positives = 373/617 (60%), Gaps = 43/617 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDDVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V +D QG S + +PF+ K+V E ++ G+ +I E
Sbjct: 61 KEV------------EDIIGQGSE-SQSGHIPFTPRAKKVLELSLREGLQMGHKYIGTEF 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL +LG D+ + + L G EG +P G
Sbjct: 108 LLLGLIREGEGVAAQVLVKLGADLQRVRQQVIQLLSG---YEGNQPEGGGEQSGGGAVGA 164
Query: 259 TAAL-----KSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKN 312
A + G+ + S LEQF +LT A + +DPV+GRE EI+R++Q+L RRTKN
Sbjct: 165 GATMGGGRGNQSGKDKGSLVLEQFGRNLTQAAKDGELDPVVGREKEIERVMQVLSRRTKN 224
Query: 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVT 372
NP+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+
Sbjct: 225 NPVLIGEPGVGKTAVVEGLALDIVNEKVPETLKDKQVYSLDLGSLVAGSRYRGDFEERLK 284
Query: 373 TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432
++ EI + GD+ILFIDE+HT++G+G +G +D ++LLKP L RGELQ I +TT
Sbjct: 285 KVLKEINQRGDIILFIDEIHTMVGAGAA----EGA-IDAASLLKPKLARGELQTIGATTL 339
Query: 433 DEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492
DE+R EKD AL RRFQPV + EPS E + +L GLR++YEAHH T A+ AA L
Sbjct: 340 DEYRKHIEKDAALERRFQPVQVPEPSVELTIEVLKGLRDRYEAHHRVSITDGALAAAARL 399
Query: 493 SARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQA--- 549
S RYISDRYLPDKA+DL+DEAG+R I KR + + DD E+R+ +
Sbjct: 400 SDRYISDRYLPDKAVDLIDEAGARMRI---KRMTAPEGL---REIDDKIAEVRSEKEKAI 453
Query: 550 -MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ + S+L+ D + T E + S + D+ A VG + IA V W+GIP
Sbjct: 454 DKQDFEEASKLR--DKERQL--TEERNKKDSEWRDKEADQIAEVGEEQIAEVLGGWTGIP 509
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T +E L+ +E++L KR+IGQDEAV ++SRA++R+R GLKDPNRP+ + +F GP+
Sbjct: 510 VLKLTEEESSRLLKMEDELHKRIIGQDEAVRSVSRAIRRTRAGLKDPNRPSGSFIFAGPS 569
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTEL+K+LA FG
Sbjct: 570 GVGKTELSKALAEFLFG 586
>gi|359766456|ref|ZP_09270267.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
polyisoprenivorans NBRC 16320]
gi|378719673|ref|YP_005284562.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpC
[Gordonia polyisoprenivorans VH2]
gi|359316093|dbj|GAB23100.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
polyisoprenivorans NBRC 16320]
gi|375754376|gb|AFA75196.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpC
[Gordonia polyisoprenivorans VH2]
Length = 847
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 256/612 (41%), Positives = 372/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P + + L+QF +LTA A+E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 SSESGTP--STSLVLDQFGRNLTAAAAEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGKVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE+HH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYESHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDERIADARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAAGLRDKEKQLVAERAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|452972567|gb|EME72396.1| ATP-dependent Clp protease ClpC [Bacillus sonorensis L12]
Length = 810
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 270/612 (44%), Positives = 372/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E G++ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLSPDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ +G+ S + + ++ K+V E A++ +R G++++ EH
Sbjct: 62 KEVESLI------------GRGQEMSQS--IHYTPRAKKVTELAMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G G SG
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGSNESGG------------GASGA 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 155 NSNANTP------TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS E++++IL GLR++YEAHH T EAI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIQVDQPSPEESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + F + PP+ E + + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + VE + + + E + V DDIA V S W+G+PV +I
Sbjct: 433 SQEFEKAASLRDTEQRLREQVEETKKTWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESIFG 564
>gi|255659404|ref|ZP_05404813.1| negative regulator of genetic competence ClpC/MecB [Mitsuokella
multacida DSM 20544]
gi|260848366|gb|EEX68373.1| negative regulator of genetic competence ClpC/MecB [Mitsuokella
multacida DSM 20544]
Length = 840
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 267/634 (42%), Positives = 374/634 (58%), Gaps = 56/634 (8%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPN--GFLESGITIDKAREAVV 142
FT RA+KA+ F+Q A+ L +D + T+H+LLGL+ E+ +G+T D + V
Sbjct: 7 FTSRAIKAIEFAQYAARELEQDYIGTEHILLGLLHEEGSVAFAALQAAGLTFDAVMQRVE 66
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
++ +D+ P+ ++ KRV E AVE +++ G+N+I EHI L
Sbjct: 67 AMVAGDAEYPSDN------PY-------YTPRAKRVMEGAVEEAQTLGHNYIGTEHILLS 113
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
L +G+A +L +GVD++ L + R+ + EPS A+
Sbjct: 114 LLEETEGAAAELLIGMGVDIDALQGEVLDRIDHPHPEGDGEPSRAE-------------- 159
Query: 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322
K+ GR ++++ +L A E+ +DPVIGR+ EIQR+IQIL RRTKN PILLGE GV
Sbjct: 160 KAKGRQAPQLIKKYGRNLNDMAKEDRMDPVIGRDKEIQRVIQILARRTKNTPILLGEPGV 219
Query: 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG 382
GKTAIAEGLA RIV+ VP L K+++SL + L+AGAK RGE E R+ LI E+++ G
Sbjct: 220 GKTAIAEGLAQRIVEGSVPYMLQDKKVVSLSLASLVAGAKYRGEFEERLKGLIDEVRQDG 279
Query: 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD 442
+ILFIDE+HTL+G+G LD +N+LKP+L RGE+Q I +TT DE++ EKD
Sbjct: 280 TIILFIDEMHTLVGAGAA-----EGALDAANILKPALSRGEIQIIGATTLDEYKKHLEKD 334
Query: 443 KALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502
AL+RRFQ +L+ EPS EDA +IL+GLR KYEA H AI AAV LS RYI+DR+L
Sbjct: 335 AALSRRFQTILVEEPSIEDAKKILMGLRGKYEAFHCAHIEDAAIEAAVRLSHRYITDRFL 394
Query: 503 PDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYD 562
PDKAIDL+DEA S+ ++ +++P + QEIR V + + +
Sbjct: 395 PDKAIDLMDEAASKVRMKQ-----------VAQP--EKLQEIRARLEKLGVEKEAAISAQ 441
Query: 563 DV--VASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQITAD 615
D A + D E V+ L A E V DDIA V + W+G+PV+QI A
Sbjct: 442 DYERAARIRD-DEQKVKDELEEAKRRFEKRGKSRITVTADDIADVVAQWTGVPVRQIAAK 500
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +E+ L +RV+GQ EAV A+S+A++R+R GLKDP RP + LF GPTGVGKTEL
Sbjct: 501 ESDRLLHMEKILTRRVVGQQEAVEAVSKAIRRARAGLKDPKRPIGSFLFLGPTGVGKTEL 560
Query: 676 AKSLAACYFGSVRIHYLFFPSPFNSVKVALSRQI 709
AK+L+ FG+ F S + K A+SR +
Sbjct: 561 AKALSEALFGTEDAIIRFDMSEYME-KYAVSRMV 593
>gi|302390639|ref|YP_003826460.1| ATPase AAA [Thermosediminibacter oceani DSM 16646]
gi|302201267|gb|ADL08837.1| ATPase AAA-2 domain protein [Thermosediminibacter oceani DSM 16646]
Length = 814
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 268/619 (43%), Positives = 362/619 (58%), Gaps = 75/619 (12%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAV 141
+FTERA + + ++Q EA+ L ++V T+HLLLGLI E G+ + K RE V
Sbjct: 4 KFTERAQRVIAYAQEEARRLNHNVVGTEHLLLGLIREGEGVAARALQNLGVELSKVREQV 63
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ PF + ++ KRV E A++ SR +N++ EHI L
Sbjct: 64 QRLIGVG-------------PFVVQGPIGYTPRAKRVLELALDESRRLKHNYVGTEHILL 110
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL +G A +VL LGV + +S L ++ P K SG T
Sbjct: 111 GLIREGEGVAAQVLANLGVSLERARTEVLSLLGSDVKGH---PGFRK-------SGNTPT 160
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
L QF DLT A+E +DPVIGR+ EI+R+IQ+L RRTKNNP L+GE G
Sbjct: 161 LN-----------QFSRDLTELAAEGKLDPVIGRQKEIERVIQVLTRRTKNNPCLIGEPG 209
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAI EGLA RIV+ EVP L KRI+SLD+ L+AG K RGE E R+ +I+E++++
Sbjct: 210 VGKTAIVEGLAQRIVEGEVPEILKDKRIVSLDLASLVAGTKFRGEFEERLKKVINEVKQA 269
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G+VILFIDE+HT+IG+G +D SN+LKPSL RGELQ I +TT DE+R EK
Sbjct: 270 GNVILFIDEMHTIIGAGAA-----EGAIDASNILKPSLARGELQTIGATTLDEYRKHVEK 324
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQP+++ EPS ED ++IL GLR+KYEAHH K + EA+ AA LSARYI+DRY
Sbjct: 325 DPALERRFQPIIVEEPSVEDTIKILEGLRDKYEAHHRVKISDEALVAAAKLSARYITDRY 384
Query: 502 LPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYWQEIRTV 547
LPDKA+DL+DEA SR + EL +KE+ I ++ ++ + R
Sbjct: 385 LPDKAVDLIDEAASRVRLQSLTAPPELKELEDELDAVRKEKDAAIRAQ---EFEKAARLR 441
Query: 548 QAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
HE+ + K D + ++ E A V DIA + S W+GI
Sbjct: 442 DKEHEI----KAKVDSLKTRWQQEKKL-------------ENATVTAADIAGIVSNWTGI 484
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV+++T +E L+ +EE L +RVIGQDEAV A++RA++R+R GLKDP RP + +F GP
Sbjct: 485 PVERMTEEESERLLRMEEILHQRVIGQDEAVEAVARAIRRARAGLKDPRRPVGSFIFLGP 544
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGKTELA++LA FG
Sbjct: 545 TGVGKTELARALAEAMFGD 563
>gi|381398100|ref|ZP_09923508.1| ATPase AAA-2 domain protein [Microbacterium laevaniformans OR221]
gi|380774766|gb|EIC08062.1| ATPase AAA-2 domain protein [Microbacterium laevaniformans OR221]
Length = 841
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 263/614 (42%), Positives = 375/614 (61%), Gaps = 52/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEAKMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I Q T +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQDIIGQGQQQPT-------------GHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS-LAKGVRENSISG 257
I LGL +G A +VL +LG D+N + + L G +G+EP+ +A G E +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNKVRQQVIQLLSG---YQGKEPAGVAAGAGEQN--- 161
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ + ++ L+QF +LT A + +DPVIGRE EI+R++QIL RR+KNNP+L+
Sbjct: 162 -----QQAAQGGSAVLDQFGRNLTQAARDNKLDPVIGREKEIERVMQILSRRSKNNPVLI 216
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ +VP L K++ SLD+G L+AG++ RG+ E R+ + E
Sbjct: 217 GEPGVGKTAVVEGLAQAIVKNDVPETLKDKQVYSLDLGSLIAGSRYRGDFEERLKKVTKE 276
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+I+FIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 IRTRGDIIVFIDEIHTLVGAGAA-----EGAIDAASILKPLLARGELQTIGATTLDEYRK 331
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
FEKD AL RRFQP+ ++EPS A+ IL GLR++YEAHH + T AI AA +L+ RYI
Sbjct: 332 HFEKDAALERRFQPIQVAEPSLPHAINILKGLRDRYEAHHKVQITDGAIVAAANLADRYI 391
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
SDR+LPDKAIDL+DEAG+R + ILS PP+ ++ ++I V+ E
Sbjct: 392 SDRFLPDKAIDLIDEAGARLRL-----------SILSSPPELREFDEKIAKVREDKETA- 439
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
S + + A++ D + ++ L + D AVV IA V + +GIPV
Sbjct: 440 -SEEQDFEKAAALRDEEKSLLAERLRLEKQWRSGDVASHAVVDEGLIAEVLAQATGIPVF 498
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E LV +E+ L +RVIGQ+EA+AA+SR ++R R GLKDP RP+ + +F GPTGV
Sbjct: 499 KLTEEETSRLVFMEKALHQRVIGQEEAIAALSRTIRRQRAGLKDPKRPSGSFIFAGPTGV 558
Query: 671 GKTELAKSLAACYF 684
GKTELAK+LA F
Sbjct: 559 GKTELAKALAEFLF 572
>gi|111021395|ref|YP_704367.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus
jostii RHA1]
gi|384107232|ref|ZP_10008133.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus
imtechensis RKJ300]
gi|419966758|ref|ZP_14482676.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus
opacus M213]
gi|424854680|ref|ZP_18279038.1| ATP-dependent chaperone ClpB [Rhodococcus opacus PD630]
gi|110820925|gb|ABG96209.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus
jostii RHA1]
gi|356664727|gb|EHI44820.1| ATP-dependent chaperone ClpB [Rhodococcus opacus PD630]
gi|383832621|gb|EID72092.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus
imtechensis RKJ300]
gi|414567867|gb|EKT78642.1| ATP-binding subunit of ATP-dependent Clp protease [Rhodococcus
opacus M213]
Length = 845
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 257/612 (41%), Positives = 369/612 (60%), Gaps = 49/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A G R + +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPAEAGGTRGEAGTPS 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T+ + L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 165 TSLV----------LDQFGRNLTQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQAIVNGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 330 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDKIADARREKESAID 438
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 439 AQDFEKAANLRDKEKTLVAQRAEREKQWRSGDLDVIAEVDDEQIAEVLGNWTGIPVFKLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ++AV A+++A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 499 EEETTRLLRMEEELHKRIIGQEDAVKAVAKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 558
Query: 674 ELAKSLAACYFG 685
ELAKSLA FG
Sbjct: 559 ELAKSLANFLFG 570
>gi|172041364|ref|YP_001801078.1| ATP-dependent Clp protease [Corynebacterium urealyticum DSM 7109]
gi|448824288|ref|YP_007417457.1| ATP-dependent Clp protease [Corynebacterium urealyticum DSM 7111]
gi|171852668|emb|CAQ05644.1| ATP-dependent Clp protease [Corynebacterium urealyticum DSM 7109]
gi|448277785|gb|AGE37209.1| ATP-dependent Clp protease [Corynebacterium urealyticum DSM 7111]
Length = 894
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 259/617 (41%), Positives = 371/617 (60%), Gaps = 44/617 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA++L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARALNHNYIGTEHILLGLIQEGEGVAAKALESMGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I S N + +PF+ K+V E A+ + G+ +I EH
Sbjct: 61 TEVKEIIGSGGN-------------PPSGYIPFTPRAKKVLELALREALQLGHKYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGR-----EPSLAKGVREN 253
I LGL +G A +VL +LG D++ + + L G +P++A GV +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLSRVRQQVIQLLSGYEGGGEHEEAPDQPAVA-GVAPS 166
Query: 254 SISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN 313
G A KS + L+QF +LT A + +DPV+GR EI+RI+Q+L RRTKNN
Sbjct: 167 GQGGAKAGQKS----NSLVLDQFGRNLTQAAKDGKLDPVVGRAGEIERIMQVLSRRTKNN 222
Query: 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373
P+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+
Sbjct: 223 PVLIGEPGVGKTAVVEGLALDIVNGKVPETLRDKQVYSLDLGSLVAGSRYRGDFEERLKK 282
Query: 374 LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433
++ EI + GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT +
Sbjct: 283 VLKEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLE 337
Query: 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493
E+R EKD AL RRFQPV + EPS D + IL GLR++YEAHH T A+ +A L+
Sbjct: 338 EYRKHIEKDAALERRFQPVQVPEPSVADTIEILKGLRDRYEAHHRVSITDGALRSAATLA 397
Query: 494 ARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM--- 550
RYI+DR+LPDKA+DL+DEAG+R I+ K Q DD E+R +
Sbjct: 398 DRYINDRFLPDKAVDLLDEAGARMRIKRLTAPKSVQEV------DDKIAEVRRKKEAAID 451
Query: 551 -HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ + + L+ D+ T E + A + DE A V + IA V + W+GIPV
Sbjct: 452 EQDFEKAAALRDDERTL----TEERAEKEKAWRAGELDEVAEVDEEQIAEVLANWTGIPV 507
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E +L KR+IGQD+AV A+SRA++R+R GLKDPNRP+ + +F GP+G
Sbjct: 508 FKLTEEESSRLLDMEGELHKRIIGQDDAVKAVSRAIRRTRAGLKDPNRPSGSFIFAGPSG 567
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 568 VGKTELSKALAEFLFGD 584
>gi|384567728|ref|ZP_10014832.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora glauca K62]
gi|384523582|gb|EIF00778.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora glauca K62]
Length = 850
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 260/617 (42%), Positives = 374/617 (60%), Gaps = 60/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG---YQGKEPAEA----------- 153
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A + G +S L+QF +LTA A E +DPVIGR EI+R++Q+L RRTKNNP+L+
Sbjct: 154 -GAGRGEGTPSSSLVLDQFGRNLTASAREGKLDPVIGRSKEIERVMQVLSRRTKNNPVLI 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 213 GEPGVGKTAVVEGLAQNIVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 273 IKTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLEEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ AA L+ RYI
Sbjct: 328 YIEKDAALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV- 554
+DRYLPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E
Sbjct: 388 NDRYLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEVRREKESAI 436
Query: 555 ------QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ +RL+ D+ +G SE D D A V + IA V + W+GIP
Sbjct: 437 DAQDFERAARLR-DEEKTLLGQKSE---REKQWKDGDLDVVAEVDDEQIAEVLANWTGIP 492
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T +E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+
Sbjct: 493 VFKLTEEETTRLLRMEEELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPS 552
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTEL+K+LA FG
Sbjct: 553 GVGKTELSKALANFLFG 569
>gi|282853334|ref|ZP_06262671.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes J139]
gi|386070819|ref|YP_005985715.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes ATCC 11828]
gi|422389730|ref|ZP_16469827.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL103PA1]
gi|422458087|ref|ZP_16534745.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL050PA2]
gi|422463757|ref|ZP_16540370.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL060PA1]
gi|422466893|ref|ZP_16543455.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL110PA4]
gi|422566068|ref|ZP_16641707.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL082PA2]
gi|422576859|ref|ZP_16652396.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL001PA1]
gi|282582787|gb|EFB88167.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes J139]
gi|314922364|gb|EFS86195.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL001PA1]
gi|314965312|gb|EFT09411.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL082PA2]
gi|315091112|gb|EFT63088.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL110PA4]
gi|315094198|gb|EFT66174.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL060PA1]
gi|315104854|gb|EFT76830.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL050PA2]
gi|327329257|gb|EGE71017.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL103PA1]
gi|353455185|gb|AER05704.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes ATCC 11828]
Length = 844
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/614 (41%), Positives = 371/614 (60%), Gaps = 52/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK+L + + T+HLLLGLI+E LES I+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I H T+ + +PF+ K+V E ++ + +++I E
Sbjct: 61 AQVEEIIGHGTS--------------TPTGHIPFTPRAKKVLELSLREALQMNHSYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A +VL RLG D+N + + LQG E R+ + SG
Sbjct: 107 HILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLLQGYQGDE----------RQAATSG 156
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A P ++ A+ L+QF +LT A + +DPVIGRE EI+R++ +L RRTKNNP+L+
Sbjct: 157 APEA--GPQQSSATILDQFGRNLTEAARDGELDPVIGREREIERVMVVLSRRTKNNPVLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGK+A EGLA IV+ +VP L K+I SLD+G ++AG++ RG+ E R+ ++ E
Sbjct: 215 GEPGVGKSACVEGLAQAIVRGDVPETLRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 IKNRGDIILFIDEIHTLVGAGAA-----EGAIDAASMLKPMLARGELQTIGATTLDEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T EAI +A +L++RYI
Sbjct: 330 YIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAG+R +I ++ PPD ++ + I V+ E
Sbjct: 390 QDRFLPDKAIDLIDEAGARMNIRR-----------MTAPPDLREFDERIARVRVEKEAAI 438
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
++ ++ D +++ E D+ PAVVGPD+IA V S +GIPV +
Sbjct: 439 DAQ-DFERAAGLRDDEKKLLAEREAKEEEWKQGDESVPAVVGPDEIAEVLSGATGIPVFK 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E+++ KR +GQ++AV A+ R+++R+R GLKDP RP + +F GP+GVG
Sbjct: 498 LTEEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVG 557
Query: 672 KTELAKSLAACYFG 685
KTEL K+L FG
Sbjct: 558 KTELTKALTEFLFG 571
>gi|255520324|ref|ZP_05387561.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes FSL
J1-175]
Length = 819
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/639 (41%), Positives = 370/639 (57%), Gaps = 71/639 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E GI+ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH T EA+ AAV LS RYIS
Sbjct: 323 IEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAID++DE+GS+ ++ F K KE + + L K D
Sbjct: 383 DRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLSDLKKEKD-------------AA 429
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIP 608
VQG + AS+ D + + +S + ++ E + V + +A V + W+GIP
Sbjct: 430 VQGQEFEK---AASLRDKEQKLKKSLEETKANWQEKQGLDHSEVTEEIVAEVVASWTGIP 486
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +F GPT
Sbjct: 487 VAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPT 546
Query: 669 GVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GVGKTELA++LA FG +RI + F++ ++
Sbjct: 547 GVGKTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 585
>gi|283457250|ref|YP_003361820.1| ATPase [Rothia mucilaginosa DY-18]
gi|283133235|dbj|BAI64000.1| ATPase with chaperone activity, ATP-binding subunit [Rothia
mucilaginosa DY-18]
Length = 856
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 259/619 (41%), Positives = 368/619 (59%), Gaps = 59/619 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI E LES G+T++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHLLLGLIHEGEGIGARALESLGVTLNAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I P + +PF+ K+V E ++ + + +I EH
Sbjct: 61 EQVQDIVGPG-------------PQAPNGHIPFTPRAKKVLELSMREAIQLNHGYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LG+ ++G A +VL +LG + + + + G E A NS G
Sbjct: 108 ILLGMVRANEGVANQVLVKLGAEPAAVRQAVMDLISGYPGNNSGEKETAGVGAGNSREGT 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A ++ L+QF +LTA A E +DPVIGR E++R++Q+L RRTKNNP+L+G
Sbjct: 168 PAG--------STILDQFGRNLTAAAREGELDPVIGRHKEMERVMQVLSRRTKNNPVLIG 219
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 220 EPGVGKTAVVEGLAQAIVHGDVPETLKDKHLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 279
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 280 RSRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKH 334
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPSQE AV+IL G+R+KYEAHH T EAI AV+L+ARYIS
Sbjct: 335 IEKDAALERRFQPIQVEEPSQELAVQILKGVRDKYEAHHRVTITDEAIETAVNLAARYIS 394
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKA+DL+DEAG+R I KR ++ PP+ ++ + E R
Sbjct: 395 DRFLPDKAVDLIDEAGARLRI---KR--------MTAPPE--------IKLLDEKAAKLR 435
Query: 559 LKYDDVV--------ASMGDTSEIVV----ESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
+ +D + A + D + V+ E+ D V P+ IA V + +G
Sbjct: 436 QQKEDAINSQDYEKAAGLRDQEQKVLAEKEEAEKAWREGGDAFGTVTPEVIAEVLAASTG 495
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV +IT +E L+ +E++L KRVIGQ+ A+AA+SRA++R+R GLKDP RP + +F G
Sbjct: 496 VPVYKITEEESTRLLTMEQELHKRVIGQEHAIAALSRAIRRTRAGLKDPRRPGGSFIFAG 555
Query: 667 PTGVGKTELAKSLAACYFG 685
PTGVGKTELAK+LA FG
Sbjct: 556 PTGVGKTELAKALAEFLFG 574
>gi|381163390|ref|ZP_09872620.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora azurea NA-128]
gi|418462066|ref|ZP_13033124.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora azurea SZMC 14600]
gi|359737814|gb|EHK86734.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora azurea SZMC 14600]
gi|379255295|gb|EHY89221.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora azurea NA-128]
Length = 849
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/617 (41%), Positives = 371/617 (60%), Gaps = 60/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG---YQGKEPAEA----------- 153
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A + G +S L+QF +LTA A E +DPVIGR EI+R++Q+L RRTKNNP+L+
Sbjct: 154 -GAGRGEGTPSSSLVLDQFGRNLTAAARENKLDPVIGRNKEIERVMQVLSRRTKNNPVLI 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 213 GEPGVGKTAVVEGLAQNIVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 273 IKTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLEEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ AA L+ RYI
Sbjct: 328 YIEKDAALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD---------DYWQEIRTVQ 548
+DRYLPDKAIDL+DEAG+R I ++ PPD D +E +
Sbjct: 388 NDRYLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADVRREKESAI 436
Query: 549 AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ + +RL+ D+ +G SE D D A V + IA V + W+GIP
Sbjct: 437 DAQDFERAARLR-DEEKTLLGQKSE---REKQWKDGDLDVVAEVDDEQIAEVLANWTGIP 492
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T +E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+
Sbjct: 493 VFKLTEEETTRLLRMEDELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPS 552
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTEL+K+LA FG
Sbjct: 553 GVGKTELSKALANFLFG 569
>gi|116871616|ref|YP_848397.1| ClpB ATPase [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116740494|emb|CAK19614.1| ClpB ATPase [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 820
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/636 (41%), Positives = 367/636 (57%), Gaps = 65/636 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E GI+ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEG-AIDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH T EA+ AAV LS RYIS
Sbjct: 323 IEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDD--YWQEIRTVQAMH 551
DR+LPDKAID++DE+GS+ ++ F K KE + + L K D QE A+
Sbjct: 383 DRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLTDLKKEKDAAVQGQEFEKAAAL- 441
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
R K + S+ +T E S+ V D +A V + W+GIPV +
Sbjct: 442 ------RDKEHKLKKSLEETKANWQEKQGLDHSE------VTEDIVAEVVASWTGIPVAK 489
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +F GPTGVG
Sbjct: 490 LAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVG 549
Query: 672 KTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
KTELA++LA FG +RI + F++ ++
Sbjct: 550 KTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 585
>gi|50841767|ref|YP_054994.1| Clp family ATP-binding protease [Propionibacterium acnes KPA171202]
gi|289424196|ref|ZP_06425979.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes SK187]
gi|289428978|ref|ZP_06430658.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes J165]
gi|295129846|ref|YP_003580509.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes SK137]
gi|335050407|ref|ZP_08543373.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium sp. 409-HC1]
gi|335054183|ref|ZP_08547003.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium sp. 434-HC2]
gi|342212083|ref|ZP_08704808.1| Clp amino terminal domain protein [Propionibacterium sp. CC003-HC2]
gi|354606251|ref|ZP_09024222.1| ATP-dependent Clp protease ATP-binding subunit [Propionibacterium
sp. 5_U_42AFAA]
gi|365961999|ref|YP_004943565.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes TypeIA2 P.acn31]
gi|365964241|ref|YP_004945806.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes TypeIA2 P.acn17]
gi|365973180|ref|YP_004954739.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes TypeIA2 P.acn33]
gi|386023229|ref|YP_005941532.1| putative ATP-dependent Clp protease ATP-binding subunit
[Propionibacterium acnes 266]
gi|387502650|ref|YP_005943879.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes 6609]
gi|407934659|ref|YP_006850301.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes C1]
gi|417931045|ref|ZP_12574418.1| Clp amino terminal domain protein [Propionibacterium acnes SK182]
gi|419420498|ref|ZP_13960727.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes PRP-38]
gi|422384263|ref|ZP_16464404.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL096PA3]
gi|422387113|ref|ZP_16467230.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL096PA2]
gi|422391910|ref|ZP_16471984.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL099PA1]
gi|422394956|ref|ZP_16474997.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL097PA1]
gi|422425099|ref|ZP_16502045.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL043PA1]
gi|422427037|ref|ZP_16503955.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL087PA1]
gi|422429131|ref|ZP_16506036.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL072PA2]
gi|422432061|ref|ZP_16508931.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL059PA2]
gi|422434917|ref|ZP_16511775.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL083PA2]
gi|422436826|ref|ZP_16513673.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL092PA1]
gi|422442639|ref|ZP_16519442.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL002PA1]
gi|422446431|ref|ZP_16523176.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL027PA1]
gi|422447675|ref|ZP_16524407.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL036PA3]
gi|422450219|ref|ZP_16526936.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL030PA2]
gi|422453070|ref|ZP_16529766.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL087PA3]
gi|422456626|ref|ZP_16533290.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL030PA1]
gi|422460620|ref|ZP_16537254.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL038PA1]
gi|422474118|ref|ZP_16550588.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL056PA1]
gi|422476581|ref|ZP_16553020.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL007PA1]
gi|422479506|ref|ZP_16555916.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL063PA1]
gi|422481731|ref|ZP_16558130.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL036PA1]
gi|422484002|ref|ZP_16560381.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL043PA2]
gi|422487811|ref|ZP_16564142.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL013PA2]
gi|422491570|ref|ZP_16567881.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL086PA1]
gi|422494356|ref|ZP_16570651.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL025PA1]
gi|422497810|ref|ZP_16574083.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL002PA3]
gi|422500239|ref|ZP_16576495.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL063PA2]
gi|422504740|ref|ZP_16580974.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL036PA2]
gi|422509213|ref|ZP_16585371.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL046PA2]
gi|422511361|ref|ZP_16587504.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL059PA1]
gi|422514198|ref|ZP_16590319.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL087PA2]
gi|422515417|ref|ZP_16591529.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL110PA2]
gi|422517986|ref|ZP_16594058.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL074PA1]
gi|422520633|ref|ZP_16596675.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL045PA1]
gi|422523564|ref|ZP_16599576.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL053PA2]
gi|422526127|ref|ZP_16602126.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL083PA1]
gi|422531493|ref|ZP_16607441.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL110PA1]
gi|422535148|ref|ZP_16611071.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL072PA1]
gi|422536019|ref|ZP_16611927.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL078PA1]
gi|422538510|ref|ZP_16614384.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL013PA1]
gi|422541293|ref|ZP_16617151.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL037PA1]
gi|422543842|ref|ZP_16619682.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL082PA1]
gi|422546341|ref|ZP_16622168.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL050PA3]
gi|422550764|ref|ZP_16626561.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL050PA1]
gi|422552944|ref|ZP_16628731.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL005PA3]
gi|422554827|ref|ZP_16630597.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL005PA2]
gi|422557534|ref|ZP_16633277.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL025PA2]
gi|422559213|ref|ZP_16634941.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL005PA1]
gi|422562339|ref|ZP_16638017.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL046PA1]
gi|422567557|ref|ZP_16643183.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL002PA2]
gi|422570683|ref|ZP_16646278.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL067PA1]
gi|422578082|ref|ZP_16653611.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL005PA4]
gi|50839369|gb|AAT82036.1| putative Clp-family ATP-binding protease [Propionibacterium acnes
KPA171202]
gi|289154893|gb|EFD03575.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes SK187]
gi|289157979|gb|EFD06202.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes J165]
gi|291377338|gb|ADE01193.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes SK137]
gi|313765265|gb|EFS36629.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL013PA1]
gi|313772820|gb|EFS38786.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL074PA1]
gi|313793158|gb|EFS41225.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL110PA1]
gi|313802753|gb|EFS43971.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL110PA2]
gi|313806411|gb|EFS44918.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL087PA2]
gi|313810960|gb|EFS48674.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL083PA1]
gi|313814541|gb|EFS52255.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL025PA1]
gi|313815263|gb|EFS52977.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL059PA1]
gi|313817439|gb|EFS55153.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL046PA2]
gi|313821974|gb|EFS59688.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL036PA1]
gi|313824130|gb|EFS61844.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL036PA2]
gi|313826497|gb|EFS64211.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL063PA1]
gi|313828678|gb|EFS66392.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL063PA2]
gi|313831726|gb|EFS69440.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL007PA1]
gi|313834393|gb|EFS72107.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL056PA1]
gi|313840416|gb|EFS78130.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL086PA1]
gi|314916082|gb|EFS79913.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL005PA4]
gi|314917003|gb|EFS80834.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL050PA1]
gi|314921279|gb|EFS85110.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL050PA3]
gi|314926635|gb|EFS90466.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL036PA3]
gi|314931059|gb|EFS94890.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL067PA1]
gi|314954988|gb|EFS99394.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL027PA1]
gi|314959028|gb|EFT03130.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL002PA1]
gi|314961301|gb|EFT05402.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL002PA2]
gi|314964571|gb|EFT08671.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL082PA1]
gi|314969669|gb|EFT13767.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL037PA1]
gi|314977070|gb|EFT21165.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL045PA1]
gi|314980355|gb|EFT24449.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL072PA2]
gi|314985530|gb|EFT29622.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL005PA1]
gi|314987356|gb|EFT31447.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL005PA2]
gi|314989103|gb|EFT33194.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL005PA3]
gi|315078414|gb|EFT50445.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL053PA2]
gi|315082119|gb|EFT54095.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL078PA1]
gi|315086096|gb|EFT58072.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL002PA3]
gi|315087681|gb|EFT59657.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL072PA1]
gi|315097365|gb|EFT69341.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL038PA1]
gi|315099470|gb|EFT71446.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL059PA2]
gi|315102025|gb|EFT74001.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL046PA1]
gi|315106363|gb|EFT78339.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL030PA1]
gi|315110110|gb|EFT82086.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL030PA2]
gi|327331349|gb|EGE73088.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL096PA2]
gi|327333335|gb|EGE75055.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL096PA3]
gi|327334854|gb|EGE76565.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL097PA1]
gi|327445648|gb|EGE92302.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL013PA2]
gi|327447270|gb|EGE93924.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL043PA1]
gi|327449698|gb|EGE96352.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL043PA2]
gi|327454548|gb|EGF01203.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL087PA3]
gi|327456619|gb|EGF03274.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL083PA2]
gi|327457104|gb|EGF03759.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL092PA1]
gi|328755603|gb|EGF69219.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL087PA1]
gi|328756683|gb|EGF70299.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL025PA2]
gi|328761872|gb|EGF75382.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL099PA1]
gi|332674685|gb|AEE71501.1| putative ATP-dependent Clp protease ATP-binding subunit
[Propionibacterium acnes 266]
gi|333765299|gb|EGL42653.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium sp. 434-HC2]
gi|333769680|gb|EGL46777.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium sp. 409-HC1]
gi|335276695|gb|AEH28600.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes 6609]
gi|340767627|gb|EGR90152.1| Clp amino terminal domain protein [Propionibacterium sp. CC003-HC2]
gi|340769368|gb|EGR91892.1| Clp amino terminal domain protein [Propionibacterium acnes SK182]
gi|353557658|gb|EHC27026.1| ATP-dependent Clp protease ATP-binding subunit [Propionibacterium
sp. 5_U_42AFAA]
gi|365738680|gb|AEW82882.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes TypeIA2 P.acn31]
gi|365740922|gb|AEW80616.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes TypeIA2 P.acn17]
gi|365743179|gb|AEW78376.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes TypeIA2 P.acn33]
gi|379978872|gb|EIA12196.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes PRP-38]
gi|407903240|gb|AFU40070.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes C1]
gi|456740409|gb|EMF64930.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes FZ1/2/0]
Length = 844
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/614 (41%), Positives = 371/614 (60%), Gaps = 52/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK+L + + T+HLLLGLI+E LES I+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I H T+ + +PF+ K+V E ++ + +++I E
Sbjct: 61 AQVEEIIGHGTS--------------TPTGHIPFTPRAKKVLELSLREALQMNHSYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A +VL RLG D+N + + LQG E R+ + SG
Sbjct: 107 HILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLLQGYQGDE----------RQAATSG 156
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A P ++ A+ L+QF +LT A + +DPVIGRE EI+R++ +L RRTKNNP+L+
Sbjct: 157 APEA--GPQQSSATILDQFGRNLTEAARDGELDPVIGREREIERVMVVLSRRTKNNPVLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGK+A EGLA IV+ +VP L K+I SLD+G ++AG++ RG+ E R+ ++ E
Sbjct: 215 GEPGVGKSACVEGLAQAIVRGDVPETLRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 IKNRGDIILFIDEIHTLVGAGAA-----EGAIDAASMLKPMLARGELQTIGATTLDEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T EAI +A +L++RYI
Sbjct: 330 YIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAG+R +I ++ PPD ++ + I V+ E
Sbjct: 390 QDRFLPDKAIDLIDEAGARMNIRR-----------MTAPPDLREFDERIARVRVEKEAAI 438
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
++ ++ D +++ E D+ PAVVGPD+IA V S +GIPV +
Sbjct: 439 DAQ-DFERAAGLRDDEKKLLAEREAKEEEWKQGDESVPAVVGPDEIAEVLSGATGIPVFK 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E+++ KR +GQ++AV A+ R+++R+R GLKDP RP + +F GP+GVG
Sbjct: 498 LTEEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVG 557
Query: 672 KTELAKSLAACYFG 685
KTEL K+L FG
Sbjct: 558 KTELTKALTEFLFG 571
>gi|421733018|ref|ZP_16172133.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|407073059|gb|EKE46057.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus amyloliquefaciens subsp. plantarum M27]
Length = 811
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 274/616 (44%), Positives = 377/616 (61%), Gaps = 63/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F RFTERA K + +Q EA LG + T+H+LLGL+ R G LE+ G+ D
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLV---REGEGIAFKALEALGLNSD 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMP-FSISTKRVFEAAVEYSRSRGYNFI 194
K ++ V S+ G+ SA +P ++ K+V E +++ +R G++++
Sbjct: 59 KMQKEVESLI--------------GRGQESATSVPHYTPRAKKVIELSMDEARKLGHSYV 104
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL +G A RVL LGV +N A V +L G S G +S
Sbjct: 105 GTEHILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG---------SNETG---SS 151
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
SG + +P L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP
Sbjct: 152 ASGANSNANTP------TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNP 205
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ +
Sbjct: 206 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKV 265
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE
Sbjct: 266 MDEIRQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDE 320
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH T EAI AAV LS
Sbjct: 321 YRKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSD 380
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYISDR+LPDKAIDL+DEAGS+ + F + PP+ E + + E
Sbjct: 381 RYISDRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKD 429
Query: 555 QGSRLKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPV 609
+ + + AS+ DT + + VE + + + E + V +DIA V S W+G+PV
Sbjct: 430 AAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMVVSSWTGVPV 489
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+I E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTG
Sbjct: 490 SKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTG 549
Query: 670 VGKTELAKSLAACYFG 685
VGKTELA++LA FG
Sbjct: 550 VGKTELARALAESIFG 565
>gi|422408257|ref|ZP_16485218.1| negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes FSL F2-208]
gi|313611199|gb|EFR86009.1| negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes FSL F2-208]
Length = 820
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/639 (41%), Positives = 370/639 (57%), Gaps = 71/639 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E GI+ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH T EA+ AAV LS RYIS
Sbjct: 323 IEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAID++DE+GS+ ++ F K KE + + L K D
Sbjct: 383 DRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLSDLKKEKD-------------AA 429
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIP 608
VQG + AS+ D + + +S + ++ E + V + +A V + W+GIP
Sbjct: 430 VQGQEFEK---AASLRDKEQKLKKSLEETKANWQEKQGLDHSEVTEEIVAEVVASWTGIP 486
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +F GPT
Sbjct: 487 VAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPT 546
Query: 669 GVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GVGKTELA++LA FG +RI + F++ ++
Sbjct: 547 GVGKTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 585
>gi|422468632|ref|ZP_16545163.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL110PA3]
gi|314982588|gb|EFT26680.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL110PA3]
Length = 783
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/615 (41%), Positives = 371/615 (60%), Gaps = 52/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK+L + + T+HLLLGLI+E LES I+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I H T+ + +PF+ K+V E ++ + +++I E
Sbjct: 61 AQVEEIIGHGTS--------------TPTGHIPFTPRAKKVLELSLREALQMNHSYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A +VL RLG D+N + + LQG E R+ + SG
Sbjct: 107 HILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLLQGYQGDE----------RQAATSG 156
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A P ++ A+ L+QF +LT A + +DPVIGRE EI+R++ +L RRTKNNP+L+
Sbjct: 157 APEA--GPQQSSATILDQFGRNLTEAARDGELDPVIGREREIERVMVVLSRRTKNNPVLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGK+A EGLA IV+ +VP L K+I SLD+G ++AG++ RG+ E R+ ++ E
Sbjct: 215 GEPGVGKSACVEGLAQAIVRGDVPETLRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 IKNRGDIILFIDEIHTLVGAGAA-----EGAIDAASMLKPMLARGELQTIGATTLDEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T EAI +A +L++RYI
Sbjct: 330 YIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAG+R +I ++ PPD ++ + I V+ E
Sbjct: 390 QDRFLPDKAIDLIDEAGARMNIRR-----------MTAPPDLREFDERIARVRVEKEAAI 438
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
++ ++ D +++ E D+ PAVVGPD+IA V S +GIPV +
Sbjct: 439 DAQ-DFERAAGLRDDEKKLLAEREAKEEEWKQGDESVPAVVGPDEIAEVLSGATGIPVFK 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E+++ KR +GQ++AV A+ R+++R+R GLKDP RP + +F GP+GVG
Sbjct: 498 LTEEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVG 557
Query: 672 KTELAKSLAACYFGS 686
KTEL K+L FG
Sbjct: 558 KTELTKALTEFLFGD 572
>gi|418323135|ref|ZP_12934424.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
pettenkoferi VCU012]
gi|365230228|gb|EHM71338.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
pettenkoferi VCU012]
Length = 827
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 267/616 (43%), Positives = 358/616 (58%), Gaps = 64/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ R P G LES GIT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLM---REPEGIAAKVLESFGITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQEQMGALHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V L G + K + N
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVVKAL-------GSPDTGNKNTQANK- 156
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S T L S R DLT A + +DPVIGR EI R+I++L RRTKNNP+
Sbjct: 157 SNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRNQEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV +EVP L +KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNSEVPETLKNKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI +G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHHAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EP+ +D V IL GLR++YEAHH + EA+ AAV LS R
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPTVDDTVEILKGLRDRYEAHHRINISDEALEAAVKLSNR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
Y+SDR+LPDKAIDL+DEA S+ R K T PPD E + Q +E
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKV------RLKSHTT-----PPDLKEIEQKIEQVKNEKDA 429
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWSGIPV 609
+ + A++ D + +E A++ + + + +DIA V + W+GIP+
Sbjct: 430 AVHAQEFENAANLRD-KQTKLEKQYEEANNKWKNAQNGDNTALSEEDIAEVIAGWTGIPL 488
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+I E L+ LE+ L KRVIGQ EAV +IS+AV+R+R GLKDP RP + +F GPTG
Sbjct: 489 TKINETESERLLNLEDTLHKRVIGQKEAVDSISKAVRRARAGLKDPKRPIGSFIFLGPTG 548
Query: 670 VGKTELAKSLAACYFG 685
VGKTELA++LA FG
Sbjct: 549 VGKTELARALAESMFG 564
>gi|425736428|ref|ZP_18854733.1| ATPase [Brevibacterium casei S18]
gi|425478261|gb|EKU45459.1| ATPase [Brevibacterium casei S18]
Length = 845
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 257/612 (41%), Positives = 368/612 (60%), Gaps = 51/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESG--ITIDKAR 138
+FERFT+RA + V+ +Q EAK L + + T+H+LLGLI E G I++++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEAKLLKHNYIGTEHILLGLIHEGEGLAAKALEGMDISLEQVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+++I EH
Sbjct: 61 DQVQEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+ + + L G +G+EP A G E + SG
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLGRVRQEVIKLLSG---YQGKEPVAAGGREEGTPSG- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LTA A E +DPVIGR ++QR++QIL RRTKNNP+L+G
Sbjct: 164 -----------SLVLDQFGRNLTAAAREGKLDPVIGRHEQMQRVMQILSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVNGEVPEILTDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS ++ IL GLR+KYEAHH T A+ AAV++S RYI+
Sbjct: 328 IEKDAALERRFQPIQVPEPSLAHSIEILKGLRDKYEAHHKVTITEGALAAAVNMSDRYIN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAG++ I LS P + E + ++A H
Sbjct: 388 DRYLPDKAIDLIDEAGAKLRI-----------SRLSVPQEIRDLEEKILEARHRKEAAID 436
Query: 559 LKYDDVVASMGDTS-----EIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ ++ AS D+ E ++ S D A V D IA V + +GIP+ ++T
Sbjct: 437 AQDFELAASERDSEMKLQHEKEEQTEAWRKSGKDTSATVDADLIAEVLASATGIPIFKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV +ISRA++R+R GLKDP RP+ + +F GPTGVGKT
Sbjct: 497 EEESSRLLRMEDELHKRIIGQNDAVKSISRAIRRTRAGLKDPKRPSGSFIFAGPTGVGKT 556
Query: 674 ELAKSLAACYFG 685
ELAK+LA FG
Sbjct: 557 ELAKALAEFLFG 568
>gi|407978585|ref|ZP_11159414.1| class III stress response-related ATPase [Bacillus sp. HYC-10]
gi|407414781|gb|EKF36407.1| class III stress response-related ATPase [Bacillus sp. HYC-10]
Length = 811
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 275/616 (44%), Positives = 378/616 (61%), Gaps = 63/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F RFTERA K + +Q EA LG + T+H+LLGL+ R G LE+ G+ D
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHKNIGTEHILLGLV---REGEGIAAKALEALGLVSD 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMP-FSISTKRVFEAAVEYSRSRGYNFI 194
K ++ V S+ +G+ S A +P ++ K+V E +++ +R G++++
Sbjct: 59 KIQKEVESLI------------GRGQEVSQA--IPHYTPRAKKVTELSMDEARKLGHSYV 104
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL +G A RVL LGV +N A V +L G ++
Sbjct: 105 GTEHILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG-----------------SN 146
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+G +AA S L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP
Sbjct: 147 ETGASAA-GSNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNP 205
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ +
Sbjct: 206 VLIGEPGVGKTAIAEGLAQQIIHNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKV 265
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE
Sbjct: 266 MDEIRQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDE 320
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + +PS E++++IL GLR++YEAHH T EAI AAV LS
Sbjct: 321 YRKYIEKDAALERRFQPIQVDQPSVEESIQILRGLRDRYEAHHRVSITDEAIEAAVKLSD 380
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYISDR+LPDKAIDL+DEAGS+ + F + PP+ E + + E
Sbjct: 381 RYISDRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKD 429
Query: 555 QGSRLKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPV 609
+ + + AS+ DT + + VE + S + E + V DDIA V S W+G+PV
Sbjct: 430 AAVQSQEFEKAASLRDTEQRLREKVEVTKKSWKEKQGQENSEVSVDDIAMVVSSWTGVPV 489
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+I E L+ +E+ L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTG
Sbjct: 490 SKIAQTETDKLLNMEQLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTG 549
Query: 670 VGKTELAKSLAACYFG 685
VGKTELA++LA FG
Sbjct: 550 VGKTELARALAESIFG 565
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAED-----RHPNGFLESGI 132
+S +T RA K S EA+ LG V T+H+LLGLI E R N G+
Sbjct: 74 VSQAIPHYTPRAKKVTELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNL---GV 130
Query: 133 TIDKAREAVVSIWHST 148
+++KAR+ V+ + S
Sbjct: 131 SLNKARQQVLQLLGSN 146
>gi|422808348|ref|ZP_16856759.1| negative regulator of genetic competence ClpC/mecB [Listeria
monocytogenes FSL J1-208]
gi|378753382|gb|EHY63966.1| negative regulator of genetic competence ClpC/mecB [Listeria
monocytogenes FSL J1-208]
Length = 820
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/639 (41%), Positives = 370/639 (57%), Gaps = 71/639 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E GI+ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH T EA+ AAV LS RYIS
Sbjct: 323 IEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAID++DE+GS+ ++ F K KE + + L K D
Sbjct: 383 DRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLSDLKKEKD-------------AA 429
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIP 608
VQG + AS+ D + + +S + ++ E + V + +A V + W+GIP
Sbjct: 430 VQGQEFEK---AASLRDKEQKLKKSLEETKANWQEKQGLDHSEVTEEIVAEVVASWTGIP 486
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +F GPT
Sbjct: 487 VAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPT 546
Query: 669 GVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GVGKTELA++LA FG +RI + F++ ++
Sbjct: 547 GVGKTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 585
>gi|254853501|ref|ZP_05242849.1| ClpC ATPase [Listeria monocytogenes FSL R2-503]
gi|258606873|gb|EEW19481.1| ClpC ATPase [Listeria monocytogenes FSL R2-503]
Length = 821
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/639 (41%), Positives = 370/639 (57%), Gaps = 71/639 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E GI+ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH T EA+ AAV LS RYIS
Sbjct: 323 IEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAID++DE+GS+ ++ F K KE + + L K D
Sbjct: 383 DRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLSDLKKEKD-------------AA 429
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIP 608
VQG + AS+ D + + +S + ++ E + V + +A V + W+GIP
Sbjct: 430 VQGQEFEK---AASLRDKEQKLKKSLEETKANWQEKQGLDHSEVTEEIVAEVVASWTGIP 486
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +F GPT
Sbjct: 487 VAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPT 546
Query: 669 GVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GVGKTELA++LA FG +RI + F++ ++
Sbjct: 547 GVGKTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 585
>gi|46906465|ref|YP_012854.1| ClpC ATPase [Listeria monocytogenes serotype 4b str. F2365]
gi|47093952|ref|ZP_00231688.1| negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes str. 4b H7858]
gi|226222861|ref|YP_002756968.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|254825724|ref|ZP_05230725.1| ClpC ATPase [Listeria monocytogenes FSL J1-194]
gi|254932450|ref|ZP_05265809.1| ClpC ATPase [Listeria monocytogenes HPB2262]
gi|300764643|ref|ZP_07074635.1| ClpC ATPase [Listeria monocytogenes FSL N1-017]
gi|386730997|ref|YP_006204493.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
07PF0776]
gi|404279782|ref|YP_006680680.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2755]
gi|404285599|ref|YP_006692185.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|405748575|ref|YP_006672041.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes ATCC 19117]
gi|405751449|ref|YP_006674914.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2378]
gi|405754317|ref|YP_006677781.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2540]
gi|406703005|ref|YP_006753359.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes L312]
gi|417314282|ref|ZP_12100983.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
J1816]
gi|424713097|ref|YP_007013812.1| Negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes serotype 4b str. LL195]
gi|424821963|ref|ZP_18246976.1| Chaperone protein ClpB [Listeria monocytogenes str. Scott A]
gi|46879729|gb|AAT03031.1| ClpC ATPase [Listeria monocytogenes serotype 4b str. F2365]
gi|47017673|gb|EAL08470.1| negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes str. 4b H7858]
gi|225875323|emb|CAS04020.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293584007|gb|EFF96039.1| ClpC ATPase [Listeria monocytogenes HPB2262]
gi|293594968|gb|EFG02729.1| ClpC ATPase [Listeria monocytogenes FSL J1-194]
gi|300514750|gb|EFK41805.1| ClpC ATPase [Listeria monocytogenes FSL N1-017]
gi|328467843|gb|EGF38883.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
J1816]
gi|332310643|gb|EGJ23738.1| Chaperone protein ClpB [Listeria monocytogenes str. Scott A]
gi|384389755|gb|AFH78825.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
07PF0776]
gi|404217775|emb|CBY69139.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes ATCC 19117]
gi|404220649|emb|CBY72012.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2378]
gi|404223517|emb|CBY74879.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2540]
gi|404226417|emb|CBY47822.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2755]
gi|404244528|emb|CBY02753.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|406360035|emb|CBY66308.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes L312]
gi|424012281|emb|CCO62821.1| Negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes serotype 4b str. LL195]
Length = 820
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/639 (41%), Positives = 370/639 (57%), Gaps = 71/639 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E GI+ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEGA-IDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH T EA+ AAV LS RYIS
Sbjct: 323 IEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAID++DE+GS+ ++ F K KE + + L K D
Sbjct: 383 DRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLSDLKKEKD-------------AA 429
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIP 608
VQG + AS+ D + + +S + ++ E + V + +A V + W+GIP
Sbjct: 430 VQGQEFEK---AASLRDKEQKLKKSLEETKANWQEKQGLDHSEVTEEIVAEVVASWTGIP 486
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +F GPT
Sbjct: 487 VAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPT 546
Query: 669 GVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GVGKTELA++LA FG +RI + F++ ++
Sbjct: 547 GVGKTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 585
>gi|417932743|ref|ZP_12576081.1| Clp amino terminal domain protein [Propionibacterium acnes
SK182B-JCVI]
gi|340774379|gb|EGR96866.1| Clp amino terminal domain protein [Propionibacterium acnes
SK182B-JCVI]
Length = 842
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/615 (41%), Positives = 371/615 (60%), Gaps = 52/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK+L + + T+HLLLGLI+E LES I+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I H T+ + +PF+ K+V E ++ + +++I E
Sbjct: 61 AQVEEIIGHGTS--------------TPTGHIPFTPRAKKVLELSLREALQMNHSYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A +VL RLG D+N + + LQG E R+ + SG
Sbjct: 107 HILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLLQGYQGDE----------RQAATSG 156
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A P ++ A+ L+QF +LT A + +DPVIGRE EI+R++ +L RRTKNNP+L+
Sbjct: 157 APEA--GPQQSSATILDQFGRNLTDAARDGELDPVIGREREIERVMVVLSRRTKNNPVLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGK+A EGLA IV+ +VP L K+I SLD+G ++AG++ RG+ E R+ ++ E
Sbjct: 215 GEPGVGKSACVEGLAQAIVRGDVPETLRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 IKNRGDIILFIDEIHTLVGAGAA-----EGAIDAASMLKPMLARGELQTIGATTLDEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T EAI +A +L++RYI
Sbjct: 330 YIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAG+R +I ++ PPD ++ + I V+ E
Sbjct: 390 QDRFLPDKAIDLIDEAGARMNIRR-----------MTAPPDLREFDERIAHVRVEKEAAI 438
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
++ ++ D +++ E D+ PAVVGPD+IA V S +GIPV +
Sbjct: 439 DAQ-DFERAAGLRDDEKKLLAEREAKEEEWKQGDESVPAVVGPDEIAEVLSGATGIPVFK 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E+++ KR +GQ++AV A+ R+++R+R GLKDP RP + +F GP+GVG
Sbjct: 498 LTEEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVG 557
Query: 672 KTELAKSLAACYFGS 686
KTEL K+L FG
Sbjct: 558 KTELTKALTEFLFGD 572
>gi|410658561|ref|YP_006910932.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB [Dehalobacter
sp. DCA]
gi|410661548|ref|YP_006913919.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB [Dehalobacter
sp. CF]
gi|409020916|gb|AFV02947.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB [Dehalobacter
sp. DCA]
gi|409023904|gb|AFV05934.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB [Dehalobacter
sp. CF]
Length = 827
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 257/613 (41%), Positives = 360/613 (58%), Gaps = 56/613 (9%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID--KAREAV 141
+FT++A K + ++ AK +G ++ T+H LL LI E +GI +D K +
Sbjct: 4 KFTQKAEKVFMLAEAIAKRMGHKIIGTEHFLLALIEEGEGVAAKALTGIGLDPDKVSAKI 63
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
I G P S ++ S KRV + A E ++ +G N+I EHI L
Sbjct: 64 TQI------------IGVGTPIS--GEVGLSPRVKRVIQLATEEAQRQGVNYIGTEHILL 109
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL +G A RVL L + + V L GE EG S+ G +AA
Sbjct: 110 GLIIEGEGIAARVLADLKISPEKIWEQVVELLGGE--TEG-----------TSMPGSSAA 156
Query: 262 LKS-PGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
S PG+ + L +F DLT A+E +DPV+GR EI+R+IQ+L RRTKNNP+L+GE
Sbjct: 157 NNSKPGQAGGTPTLNEFGRDLTVMAAEGKLDPVVGRGNEIERVIQVLSRRTKNNPVLIGE 216
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA RIV +VP L+ KR+++LD+ ++AG K RGE E R+ ++ EI+
Sbjct: 217 PGVGKTAIAEGLAQRIVNNQVPEILVDKRVVTLDLSSMVAGTKYRGEFEERMKKVMEEIR 276
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
+G+V++FIDE+HTLIG+G +D +N+LKP+L RGE+QCI +TT DE+R
Sbjct: 277 LAGNVVVFIDELHTLIGAGAA-----EGAIDAANILKPALARGEMQCIGATTLDEYRKHI 331
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
E+D AL RRFQP+ + EP+ E+ V IL GLR+KYEAHH K + EAI+ A LS RYISD
Sbjct: 332 ERDPALERRFQPIKVGEPTVEETVAILKGLRDKYEAHHRVKISDEAIDVAARLSDRYISD 391
Query: 500 RYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQAMHE 552
R+LPDKAIDL+DEA SR I F ++ E++ L K + QE + +
Sbjct: 392 RFLPDKAIDLIDEAASRVRIHSFTAPSDLKELEEEIENLKKEKEAAVKRQEFEKAAEIRD 451
Query: 553 VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
Q R K ++ + ++ E + VVGP+DI+ + S W+G+PV ++
Sbjct: 452 EEQKKREKLSEIRKNWEESRE-------------KDRMVVGPEDISGIVSSWTGVPVNKL 498
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
E L+ LE L + VIGQDEAV A++R+++R+R GLKDP RP + +F GPTGVGK
Sbjct: 499 EEGESFRLLKLESLLHESVIGQDEAVTAVARSIRRARAGLKDPKRPIGSFIFLGPTGVGK 558
Query: 673 TELAKSLAACYFG 685
T+LA+SLA FG
Sbjct: 559 TQLARSLAESLFG 571
>gi|308175906|ref|YP_003915312.1| ATP-dependent Clp protease ATP-binding subunit [Arthrobacter
arilaitensis Re117]
gi|307743369|emb|CBT74341.1| ATP-dependent Clp protease ATP-binding subunit [Arthrobacter
arilaitensis Re117]
Length = 840
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/617 (42%), Positives = 373/617 (60%), Gaps = 56/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI E D LES I++ R
Sbjct: 4 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHLLLGLIHEGDGVAAKALESLNISLGAVR 63
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I Q P + +PF+ K+V E ++ + G+N+I EH
Sbjct: 64 EQVQEII----------GKGQQAP---SGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 110
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+ + + L G +G +E + +G
Sbjct: 111 ILLGLIREGEGVAAQVLVKLGADLGRVRQQVIQLLSG-----------YQGGKETASAGV 159
Query: 259 TAALKSPGRTRASA-LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
++ + G SA L+QF +LTA A E +DPVIGRE E++R++Q+L RRTKNNP+L+
Sbjct: 160 SSGGQQEGTPAGSAVLDQFGRNLTAAAREGKLDPVIGREHEMERVMQVLSRRTKNNPVLI 219
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ +VP + K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 220 GEPGVGKTAVVEGLAQSIVRGDVPETIKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKE 279
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 280 IRTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRK 334
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS E +IL GLR++YEAHH T A+ AA L+ RYI
Sbjct: 335 NIEKDAALERRFQPIQVKEPSVELTTQILRGLRDRYEAHHRVTITDGALQAAATLAHRYI 394
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP--DDYWQEIRTVQAMHEVVQ 555
SDR+LPDKA+DL+DEAG+R I+ ++ PP + +EI TV+ E
Sbjct: 395 SDRFLPDKAVDLIDEAGARLRIQR-----------MTAPPALKEMDEEIATVRLEKEAA- 442
Query: 556 GSRLKYDDV--VASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIP 608
+ D AS+ D ++E+ D DE + V + IA V + +GIP
Sbjct: 443 ---IDAQDFEGAASLRDKESKLIEARNEKEKSWRNGDMDEVSEVTEELIAEVLANSTGIP 499
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T +E L+ +E++L KRVIGQD A+ AIS+A++R+R GLKDPNRP + +F GPT
Sbjct: 500 VVKLTEEESSRLLNMEDELHKRVIGQDSAIKAISQAIRRTRAGLKDPNRPGGSFIFAGPT 559
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTELAK+LA FG
Sbjct: 560 GVGKTELAKALAEFLFG 576
>gi|242620119|ref|YP_003002123.1| ATP-dependent clp protease ATP-binding subunit [Aureococcus
anophagefferens]
gi|239997364|gb|ACS36887.1| ATP-dependent clp protease ATP-binding subunit [Aureococcus
anophagefferens]
Length = 846
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/614 (41%), Positives = 377/614 (61%), Gaps = 50/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES------GITI 134
+FERFTE+A+K V+ SQ E++ LG + V T+ +LLGLI E NG + G+T+
Sbjct: 1 MFERFTEKAIKVVMLSQEESRRLGHNFVGTEQILLGLIGE----NGGVAYKVLRTFGVTL 56
Query: 135 DKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
+AR V I +G F A ++PF+ KRV E A+E +R G+ +I
Sbjct: 57 REARTEVERII------------GRGSGFV-AVEIPFTPRAKRVLEIAIEEARDLGHGYI 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EH+ L L + G RVL++LG+ +S+++ EL + E E +
Sbjct: 104 GTEHVLLALLEEEVGVGVRVLQQLGL--------VISQIRTELLIQIGESI------EAA 149
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
++G+ + L G A+E+F +LT A +DPV+GR+ EI R+IQIL RR KNNP
Sbjct: 150 VAGEKSELFDMG---GLAIEEFTTNLTESAFNGNLDPVVGRDDEISRVIQILARRRKNNP 206
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+AEGLA RIV+ +VP L K+++SLD+GLL+AG K RGE E R+ +
Sbjct: 207 VLIGEPGVGKTAVAEGLAQRIVERDVPALLDDKQVISLDVGLLLAGTKYRGEFEERLKRI 266
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ E++ S ++IL IDEVHTLIG+G +G +D +N+LKP+L RGELQC+ +TT +E
Sbjct: 267 VDEVRSSENIILVIDEVHTLIGAGAA----EG-AVDAANILKPALARGELQCLGATTVEE 321
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R E+D AL RRFQPV I EPS +D V IL LR +YE HH K +A+ AA + A
Sbjct: 322 YRKHIERDSALERRFQPVQIDEPSVDDTVDILRCLRARYERHHGLKIGDDALEAAARMGA 381
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
+YI+DR+LPDKAIDL+DEA +R + L + L + D +E +
Sbjct: 382 QYIADRFLPDKAIDLIDEASAR--VRLRATRTPDSATGLKRELRDVMKEKEAAIREQDFE 439
Query: 555 QGSRL--KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + + + ++ A + + S P+ + + +VV +DIA V + W+GIPV ++
Sbjct: 440 RAADILDREIEIRAQLNIILSTIKRVSTPTETSTYD-SVVCEEDIAGVVAAWTGIPVNKL 498
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+ E L+ +E+ L R+IGQ++AV+A+SRA++R+RVGL++PNRP A+ +F GPTGVGK
Sbjct: 499 SKTESEKLLLMEDTLHSRIIGQEQAVSAVSRAIRRARVGLRNPNRPIASFMFSGPTGVGK 558
Query: 673 TELAKSLAACYFGS 686
TEL K+LA +FG+
Sbjct: 559 TELTKALALYFFGA 572
>gi|312138070|ref|YP_004005406.1| DNA binding ATP-dependent peptidase [Rhodococcus equi 103S]
gi|311887409|emb|CBH46721.1| putative DNA binding ATP-dependent peptidase [Rhodococcus equi
103S]
Length = 851
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 256/612 (41%), Positives = 369/612 (60%), Gaps = 49/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A G R + +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPAEAGGSRGEAGTPS 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T+ + L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 165 TSLV----------LDQFGRNLTQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQAIVNGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 330 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDKIADARREKESAID 438
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 439 AQDFEKAANLRDKEKTLVAQRAEREKQWRSGDLDVIAEVDDEQIAEVLGNWTGIPVFKLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 499 EEETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 558
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 559 ELSKALANFLFG 570
>gi|347547703|ref|YP_004854031.1| putative endopeptidase Clp ATP-binding chain C [Listeria ivanovii
subsp. ivanovii PAM 55]
gi|346980774|emb|CBW84681.1| Putative endopeptidase Clp ATP-binding chain C [Listeria ivanovii
subsp. ivanovii PAM 55]
Length = 820
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/636 (41%), Positives = 367/636 (57%), Gaps = 65/636 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E GI+ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISAEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEG-AIDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH T A++AAV LS RYIS
Sbjct: 323 IEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDAALDAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDD--YWQEIRTVQAMH 551
DR+LPDKAID++DEAGS+ ++ F K KE + + L K D QE A+
Sbjct: 383 DRFLPDKAIDVIDEAGSKVRLKSFTTPKNVKEMENNLTDLKKEKDAAVQGQEFEKAAAL- 441
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
R K + S+ +T E S+ V D +A V + W+GIPV +
Sbjct: 442 ------RDKEHKLKKSLEETKANWKEKQGLDHSE------VTEDIVAEVVASWTGIPVAK 489
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +F GPTGVG
Sbjct: 490 LAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVG 549
Query: 672 KTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
KTELA++LA FG +RI + F++ ++
Sbjct: 550 KTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 585
>gi|325675027|ref|ZP_08154714.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
equi ATCC 33707]
gi|325554613|gb|EGD24288.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
equi ATCC 33707]
Length = 851
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 256/612 (41%), Positives = 369/612 (60%), Gaps = 49/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A G R + +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPAEAGGSRGEAGTPS 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T+ + L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 165 TSLV----------LDQFGRNLTQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQAIVNGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 330 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDKIADARREKESAID 438
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 439 AQDFEKAANLRDKEKTLVAQRAEREKQWRSGDLDVIAEVDDEQIAEVLGNWTGIPVFKLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 499 EEETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 558
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 559 ELSKALANFLFG 570
>gi|423718349|ref|ZP_17692531.1| ATP-dependent Clp protease ATP-binding subunit clpA [Geobacillus
thermoglucosidans TNO-09.020]
gi|383365159|gb|EID42460.1| ATP-dependent Clp protease ATP-binding subunit clpA [Geobacillus
thermoglucosidans TNO-09.020]
Length = 810
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 260/612 (42%), Positives = 364/612 (59%), Gaps = 55/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ +K +
Sbjct: 1 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLIREGEGIAAKALMALGLGPEKIQ 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ + + ++ K+V E +++ +R G++++ EH
Sbjct: 61 KEVESLI--------------GRGHEVSHTIHYTPRAKKVLELSMDEARKLGHSYVGTEH 106
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G S+SG
Sbjct: 107 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS---------------NESVSGH 150
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ S T L+ DLTA A E +DPV+GR EIQR+I++L RRTKNNP+L+G
Sbjct: 151 SGGGASHVST--PTLDSLARDLTAIAREGRLDPVVGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIINNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH + +AI AV LS RYI+
Sbjct: 324 IEKDAALERRFQPIYVDEPTVEESIQILKGLRDRYEAHHRVSISDDAIVQAVKLSDRYIT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + F + PP E + + E +
Sbjct: 384 DRFLPDKAIDLIDEACSKVRLRSF-----------TAPPKLKELEQKLEEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + + E + E + V +DIA V S W+GIPV ++
Sbjct: 433 SQEFEKAASLRDMEQRLREELEETKRAWKEKQGQENSEVTVEDIAMVVSSWTGIPVAKLA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L RV+GQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETERLLKLEEILHSRVVGQDEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAEAMFG 564
>gi|331268385|ref|YP_004394877.1| ATPase AAA-2 domain-containing protein [Clostridium botulinum
BKT015925]
gi|329124935|gb|AEB74880.1| ATPase AAA-2 domain protein [Clostridium botulinum BKT015925]
Length = 813
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/614 (42%), Positives = 371/614 (60%), Gaps = 54/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + ++Q A+ V T+H+LLG++ ED + L + + +++ E+
Sbjct: 2 MFGRFTERAQKVLYYAQEAAQIFKHGYVGTEHILLGILKEDEGISKKLLNEMNVNE--ES 59
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V + ++ G + ++P + TKR+ E ++ SR +N+I PEHI
Sbjct: 60 VSKL--------IEEYEGTGDINLNKNEIPLTPRTKRLLELSLLESRKNNHNYITPEHIL 111
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS--LAKGVRENSISGK 258
L + +G A +L L V+ +LQ EL K+ S + E +IS
Sbjct: 112 LAMIKESEGVAYAILNNLNVNF--------EKLQKELLKDSNLSSGKMVSEKMEKNISHN 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T L GR DLT A + +DPVIGR++E +R+++ILCRR KNNP L+G
Sbjct: 164 TPTLDKYGR-----------DLTNMAIDGKLDPVIGRDSETERVLEILCRRIKNNPCLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTAIAEGLA RIV +P L KR+++LD+ ++AG+K RGE E RV ++ EI
Sbjct: 213 DPGVGKTAIAEGLAQRIVSGNIPEILKDKRVVTLDISSMVAGSKYRGEFEDRVKKVMDEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
K G+VILFIDE+HT++G+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 273 YKDGNVILFIDEIHTIVGAG----GAEG-AIDASNILKPALARGELQCIGATTIDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP++E++++IL GLR+KYEAHH K T EAI AAV LS RYI+
Sbjct: 328 IEKDSALERRFQPVNVGEPTKEESIQILKGLRDKYEAHHGVKITDEAIQAAVELSDRYIT 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAG++ I+ L+ PPD E + E
Sbjct: 388 DRYLPDKAIDLIDEAGAKVRIK-----------NLTAPPDLKGLEEELEKVGKEKEDAIT 436
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPA------VVGPDDIAAVASLWSGIPVQQI 612
++ + AS+ DT E ++ L ++ + +V + IA V S WS +P++++
Sbjct: 437 VQDFEKAASLRDT-EKELKDKLKDFKNNWKKKSQVATQIVSKEQIAQVVSTWSNVPIEKL 495
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ LEE L KRVIGQ+EAV +I++AV+R+RVGLKDP RP + +F GPTGVGK
Sbjct: 496 TEKEADRLLKLEEILHKRVIGQNEAVKSIAKAVRRARVGLKDPKRPIGSFIFLGPTGVGK 555
Query: 673 TELAKSLAACYFGS 686
TEL+K+LA FG
Sbjct: 556 TELSKALAEAMFGD 569
>gi|312109233|ref|YP_003987549.1| ATPase AAA [Geobacillus sp. Y4.1MC1]
gi|336233627|ref|YP_004586243.1| ATPase AAA-2 domain-containing protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|311214334|gb|ADP72938.1| ATPase AAA-2 domain protein [Geobacillus sp. Y4.1MC1]
gi|335360482|gb|AEH46162.1| ATPase AAA-2 domain protein [Geobacillus thermoglucosidasius
C56-YS93]
Length = 812
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 260/612 (42%), Positives = 364/612 (59%), Gaps = 55/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ +K +
Sbjct: 3 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLIREGEGIAAKALMALGLGPEKIQ 62
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ + + ++ K+V E +++ +R G++++ EH
Sbjct: 63 KEVESLI--------------GRGHEVSHTIHYTPRAKKVLELSMDEARKLGHSYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G S+SG
Sbjct: 109 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS---------------NESVSGH 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ S T L+ DLTA A E +DPV+GR EIQR+I++L RRTKNNP+L+G
Sbjct: 153 SGGGASHVST--PTLDSLARDLTAIAREGRLDPVVGRSKEIQRVIEVLSRRTKNNPVLIG 210
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 211 EPGVGKTAIAEGLAQQIINNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 270
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 271 RQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKY 325
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH + +AI AV LS RYI+
Sbjct: 326 IEKDAALERRFQPIYVDEPTVEESIQILKGLRDRYEAHHRVSISDDAIVQAVKLSDRYIT 385
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + F + PP E + + E +
Sbjct: 386 DRFLPDKAIDLIDEACSKVRLRSF-----------TAPPKLKELEQKLEEVRKEKDAAVQ 434
Query: 559 LKYDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + + E + E + V +DIA V S W+GIPV ++
Sbjct: 435 SQEFEKAASLRDMEQRLREELEETKRAWKEKQGQENSEVTVEDIAMVVSSWTGIPVAKLA 494
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L RV+GQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 495 QTETERLLKLEEILHSRVVGQDEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 554
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 555 ELARALAEAMFG 566
>gi|121535702|ref|ZP_01667506.1| ATPase AAA-2 domain protein [Thermosinus carboxydivorans Nor1]
gi|121305733|gb|EAX46671.1| ATPase AAA-2 domain protein [Thermosinus carboxydivorans Nor1]
Length = 814
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 271/632 (42%), Positives = 374/632 (59%), Gaps = 65/632 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ +RFTERA K + + +EA LG + + T+HLLLGLI E G+ A A
Sbjct: 1 MLDRFTERARKVLALAHQEAMRLGHNYIGTEHLLLGLIHEG--------EGV----AARA 48
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ S+ S A G+ ++ ++ KRV E AV+ + + G+N+I EHI
Sbjct: 49 LASLNISLQTVRAQVEAMIGRGEGPQEQIGYTPRAKRVLELAVQEAAALGHNYIGTEHIL 108
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A +VL LG ++N + V L G A G P+ G A
Sbjct: 109 LGLIREGEGVAAQVLSSLGANIN-VVRQRVIELLGGFAMSGPMPT-----------GHGA 156
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
A+ + G T L ++ DL A E IDPV+GRETEI+R+IQ+L RRTKNNP+L+GE
Sbjct: 157 AM-AGGNTHTPLLNEYGRDLNKLAQEGKIDPVVGRETEIERVIQVLSRRTKNNPVLIGEP 215
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RIV+ +VP L KR++SL+MG L+AG+K RGE E R+ ++ EI++
Sbjct: 216 GVGKTAIAEGLAQRIVEGKVPETLRGKRVVSLNMGSLVAGSKYRGEFEERLKKIMDEIRQ 275
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTLIG+G +D +N+LKP+L RGELQ I +TT DE++ E
Sbjct: 276 AGNVILFIDEIHTLIGAGAA-----EGAIDAANILKPALARGELQTIGATTLDEYKKHIE 330
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+++ EPS E+A+ IL GLR++YEA H + T EAI AAV LS RYI+DR
Sbjct: 331 KDAALERRFQPIMVGEPSVEEAIEILRGLRDRYEAFHKAQITDEAIVAAVKLSHRYITDR 390
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQA-------MH 551
+LPDKAIDL+DEA SR + +S PPD D +++ + A
Sbjct: 391 FLPDKAIDLMDEAASRVRLR-----------AVSLPPDVKDLEKKLEKLLAEKQAAITAQ 439
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDD-----DEPAVVGPDDIAAVASLWSG 606
E + +R+K + E + L D +V +DIA + + W+G
Sbjct: 440 EFEEAARIKRE----------EDQIRQELEKRQKDWKQRGSGQVIVTEEDIAEIVAKWTG 489
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV+++ +E L+ LEE L +RVIGQD+AV A++RA++R+R GLKDP RP + LF G
Sbjct: 490 IPVKKLAEEESERLLKLEEILHQRVIGQDDAVKAVARAIRRARAGLKDPKRPIGSFLFLG 549
Query: 667 PTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698
PTGVGKTELA++LA FG F S +
Sbjct: 550 PTGVGKTELARALAEALFGKEEAMIRFDMSEY 581
>gi|226363749|ref|YP_002781531.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
opacus B4]
gi|226242238|dbj|BAH52586.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Rhodococcus
opacus B4]
Length = 845
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 256/612 (41%), Positives = 369/612 (60%), Gaps = 49/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ + G R + +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPAESGGTRGEAGTPS 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T+ + L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 165 TSLV----------LDQFGRNLTQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQAIVNGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 330 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDKIADARREKESAID 438
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 439 AQDFEKAANLRDKEKTLVAQRAEREKQWRSGDLDVIAEVDDEQIAEVLGNWTGIPVFKLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ++AV A+++A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 499 EEETTRLLRMEEELHKRIIGQEDAVKAVAKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 558
Query: 674 ELAKSLAACYFG 685
ELAKSLA FG
Sbjct: 559 ELAKSLANFLFG 570
>gi|386774044|ref|ZP_10096422.1| ATPase with chaperone activity, ATP-binding subunit
[Brachybacterium paraconglomeratum LC44]
Length = 862
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 259/622 (41%), Positives = 371/622 (59%), Gaps = 71/622 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E+ LE+ G+T+D R
Sbjct: 1 MFERFTDRARRVVVLAQDEARLLNHNYIGTEHILLGLIHENEGVGAKALEALGVTLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I N + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVRDIIGEGNQ-------------TPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G+A +VL RL + + + + RL G +G+EP+ A G E SG
Sbjct: 108 ILLGLLREGEGTAVKVLSRLKAEPSAVRQEVIERLSG---YQGKEPANAGGPSEGQPSG- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A + +DPVIGRE+E +R++Q+L RRTKNNP+L+G
Sbjct: 164 -----------SLVLDQFGRNLTQAARDGKLDPVIGRESEAERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGK+A+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKSAVVEGLAQSIVAGDVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLEEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS V IL GLR++YEAHH T A+ AA +L+ RY++
Sbjct: 328 IEKDAALERRFQPIQVDEPSVAHTVEILKGLRDRYEAHHKVTITDSALVAAANLADRYVN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAMHEV 553
DR+LPDKAIDL+DEAG+R I L+ PP D +E R + E
Sbjct: 388 DRFLPDKAIDLIDEAGARLRIRR-----------LTAPPELKEFDSRIEEAR--KKKEEA 434
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA----------VVGPDDIAAVASL 603
+ G ++ A++ D E L S D+ E A V + IA V +
Sbjct: 435 IDGQDF---ELAANLRDE-----EQKLKSERDEKEKAWRHGESDAVTTVSEEVIAEVLAA 486
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
+GIP+ ++T +E L+ +E++L KRVIGQDEA+ AISRA++R+R GLKDP RP + +
Sbjct: 487 STGIPIVKLTEEESSRLLNMEDELHKRVIGQDEAIKAISRAIRRTRAGLKDPKRPGGSFI 546
Query: 664 FCGPTGVGKTELAKSLAACYFG 685
F GPTGVGKTELAK+LA FG
Sbjct: 547 FAGPTGVGKTELAKALAEFLFG 568
>gi|422489253|ref|ZP_16565580.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL020PA1]
gi|328758387|gb|EGF72003.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL020PA1]
Length = 844
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/614 (41%), Positives = 371/614 (60%), Gaps = 52/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK+L + + T+HLLLGLI+E LES I+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I H T+ + +PF+ K+V E ++ + +++I E
Sbjct: 61 AQVEEIIGHGTS--------------TPTGHIPFTPRAKKVLELSLREALQMNHSYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A +VL RLG D+N + + LQG E R+ + SG
Sbjct: 107 HILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLLQGYQGDE----------RQAATSG 156
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A P ++ A+ L+QF +LT A + +DPVIGRE EI+R++ +L RRTKNNP+L+
Sbjct: 157 APEA--GPQQSSATILDQFGRNLTEAARDGELDPVIGREREIERVMVVLSRRTKNNPVLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGK+A EGLA IV+ +VP L K+I SLD+G ++AG++ RG+ E R+ ++ E
Sbjct: 215 GEPGVGKSACVEGLAQAIVRGDVPETLRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 IKNRGDIILFIDEIHTLVGAGAA-----EGAIDAASMLKPMLARGELQTIGATTLDEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T EAI +A +L++RYI
Sbjct: 330 YIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAG+R +I ++ PPD ++ + I V+ E
Sbjct: 390 QDRFLPDKAIDLIDEAGARMNIRR-----------MTAPPDLREFDERIARVRVEKEAAI 438
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
++ ++ D +++ E D+ PAVVGPD+IA V S +GIPV +
Sbjct: 439 DAQ-DFERAARLRDDEKKLLAEREAKEEEWKQGDESVPAVVGPDEIAEVLSGATGIPVFK 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E+++ KR +GQ++AV A+ R+++R+R GLKDP RP + +F GP+GVG
Sbjct: 498 LTEEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVG 557
Query: 672 KTELAKSLAACYFG 685
KTEL K+L FG
Sbjct: 558 KTELTKALTEFLFG 571
>gi|383830025|ref|ZP_09985114.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora xinjiangensis XJ-54]
gi|383462678|gb|EID54768.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora xinjiangensis XJ-54]
Length = 850
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/617 (41%), Positives = 371/617 (60%), Gaps = 60/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG---YQGKEPAEA----------- 153
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A + G +S L+QF +LTA A E +DPVIGR EI+R++Q+L RRTKNNP+L+
Sbjct: 154 -GAGRGEGTPSSSLVLDQFGRNLTASARENKLDPVIGRGKEIERVMQVLSRRTKNNPVLI 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 213 GEPGVGKTAVVEGLAQNIVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 273 IKTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLEEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ AA L+ RYI
Sbjct: 328 YIEKDAALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD---------DYWQEIRTVQ 548
+DRYLPDKAIDL+DEAG+R I ++ PPD D +E +
Sbjct: 388 NDRYLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADVRREKESAI 436
Query: 549 AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ + +RL+ D+ +G SE D D A V + IA V + W+GIP
Sbjct: 437 DAQDFERAARLR-DEEKTLLGQKSE---REKQWKDGDLDVVAEVDDEQIAEVLANWTGIP 492
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T +E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+
Sbjct: 493 VFKLTEEETTRLLRMEDELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPS 552
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTEL+K+LA FG
Sbjct: 553 GVGKTELSKALANFLFG 569
>gi|385267113|ref|ZP_10045200.1| ATPase AAA-2 domain-containing protein [Bacillus sp. 5B6]
gi|385151609|gb|EIF15546.1| ATPase AAA-2 domain-containing protein [Bacillus sp. 5B6]
Length = 811
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 273/616 (44%), Positives = 376/616 (61%), Gaps = 63/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F RFTERA K + +Q EA LG + T+H+LLGL+ R G LE+ G+ D
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLV---REGEGIAFKALEALGLNSD 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMP-FSISTKRVFEAAVEYSRSRGYNFI 194
K ++ V S+ G+ S +P ++ K+V E +++ +R G++++
Sbjct: 59 KMQKEVESLI--------------GRGQESTTSVPHYTPRAKKVIELSMDEARKLGHSYV 104
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL +G A RVL LGV +N A V +L G S G +S
Sbjct: 105 GTEHILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG---------SNETG---SS 151
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
SG + +P L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP
Sbjct: 152 ASGTNSNANTP------TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNP 205
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ +
Sbjct: 206 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKV 265
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE
Sbjct: 266 MDEIRQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDE 320
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH T EAI AAV LS
Sbjct: 321 YRKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSD 380
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYISDR+LPDKAIDL+DEAGS+ + F + PP+ E + + E
Sbjct: 381 RYISDRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKD 429
Query: 555 QGSRLKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPV 609
+ + + AS+ DT + + VE + + + E + V +DIA V S W+G+PV
Sbjct: 430 AAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMVVSSWTGVPV 489
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+I E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTG
Sbjct: 490 SKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTG 549
Query: 670 VGKTELAKSLAACYFG 685
VGKTELA++LA FG
Sbjct: 550 VGKTELARALAESIFG 565
>gi|398309188|ref|ZP_10512662.1| genetic competence negative regulator ClpC/MecB [Bacillus
mojavensis RO-H-1]
Length = 810
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 269/612 (43%), Positives = 368/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ +G+ S + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI------------GRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G N
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS----------------NETGSS 150
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S T L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 151 AAGTNSNANT--PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH T EAI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIQVDQPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + F + PP+ E + + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + VE + S + E + V DDIA V S W+G+PV +I
Sbjct: 433 SQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVSVDDIAMVVSSWTGVPVSKIA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESIFG 564
>gi|1314297|gb|AAC44446.1| ClpC ATPase [Listeria monocytogenes]
Length = 825
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/644 (40%), Positives = 371/644 (57%), Gaps = 76/644 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFT+RA K + SQ EA L + T+H+LLGL+ E E GI+ +K +
Sbjct: 2 MFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISSEKVQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + G + + ++ K+V E +++ +R G+ ++ EH
Sbjct: 62 QEVEGLI--------------GHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LG+ +N + L G A
Sbjct: 108 ILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDA-------------------- 147
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+ DLT A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 148 TGAGRQTNTQATPTLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 208 EPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 268 RQAGNVILFIDELHTLIGAG----GAEG-AIDASNILKPPLARGELQCIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD+AL RRFQP+ + EP+ E++++IL GLR++YEAHH T EA+ AAV LS RYIS
Sbjct: 323 IEKDRALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF---KRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAID++DE+GS+ ++ F K KE + + L K D
Sbjct: 383 DRFLPDKAIDVIDESGSKVRLKSFTTPKNVKEMENNLSDLKKEKD-------------AA 429
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP----------AVVGPDDIAAVASL 603
VQG + AS+ D + + +S + ++ + + V D +A V +
Sbjct: 430 VQGQEFEK---AASLRDKEQKLKKSLDKKSLEETKANWQEKQGLDHSEVTEDIVAEVVAS 486
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIPV ++ E L+ +E+ L +RVIGQD AV A+S AV+R+R GLKDP RP + +
Sbjct: 487 WTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFI 546
Query: 664 FCGPTGVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
F GPTGVGKTELA++LA FG +RI + F++ ++
Sbjct: 547 FLGPTGVGKTELARALAESMFGDEDSMIRIDMSEYMEKFSTARL 590
>gi|395203114|ref|ZP_10394348.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium humerusii P08]
gi|422441695|ref|ZP_16518504.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL037PA3]
gi|422473020|ref|ZP_16549501.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL037PA2]
gi|422573302|ref|ZP_16648864.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL044PA1]
gi|313835678|gb|EFS73392.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL037PA2]
gi|314928349|gb|EFS92180.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL044PA1]
gi|314970279|gb|EFT14377.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL037PA3]
gi|328908068|gb|EGG27827.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium humerusii P08]
Length = 842
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 255/615 (41%), Positives = 370/615 (60%), Gaps = 52/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK+L + + T+HLLLGLI+E LES I+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I H T+ + +PF+ K+V E ++ + +++I E
Sbjct: 61 AQVEEIIGHGTS--------------TPTGHIPFTPRAKKVLELSLREALQMNHSYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A +VL RLG D+N + + LQG E R+ + SG
Sbjct: 107 HILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLLQGYQGDE----------RQAATSG 156
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A P ++ A+ L+QF +LT A +DPVIGRE EI+R++ +L RRTKNNP+L+
Sbjct: 157 APEA--GPQQSSATILDQFGRNLTDAARGGELDPVIGREREIERVMVVLSRRTKNNPVLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGK+A EGLA IV+ +VP L K+I SLD+G ++AG++ RG+ E R+ ++ E
Sbjct: 215 GEPGVGKSACVEGLAQAIVRGDVPETLRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 IKNRGDIILFIDEIHTLVGAGAA-----EGAIDAASMLKPMLARGELQTIGATTLDEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T EAI AA +L++RYI
Sbjct: 330 YIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITAAANLASRYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAG+R +I ++ PPD ++ + I V+ E
Sbjct: 390 QDRFLPDKAIDLIDEAGARMNIRR-----------MTAPPDLREFDERIAHVRVEKEAAI 438
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
++ ++ D +++ E D+ PAVVGPD+IA V S +GIPV +
Sbjct: 439 DAQ-DFERAAGLRDDEKKLLAEREAKEEEWKQGDESVPAVVGPDEIAEVLSGATGIPVFK 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E+++ KR +GQ++AV A+ R+++R+R GLKDP RP + +F GP+GVG
Sbjct: 498 LTEEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVG 557
Query: 672 KTELAKSLAACYFGS 686
KTEL K+L FG
Sbjct: 558 KTELTKALTEFLFGD 572
>gi|157690869|ref|YP_001485331.1| class III stress response-related ATPase [Bacillus pumilus
SAFR-032]
gi|194017457|ref|ZP_03056068.1| negative regulator of genetic competence ClpC/mecB [Bacillus
pumilus ATCC 7061]
gi|157679627|gb|ABV60771.1| class III stress response-related ATPase [Bacillus pumilus
SAFR-032]
gi|194010729|gb|EDW20300.1| negative regulator of genetic competence ClpC/mecB [Bacillus
pumilus ATCC 7061]
Length = 811
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 274/616 (44%), Positives = 378/616 (61%), Gaps = 63/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F RFTERA K + +Q EA LG + T+H+LLGL+ R G LE+ G+ D
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHKNIGTEHILLGLV---REGEGIAAKALEALGLVSD 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMP-FSISTKRVFEAAVEYSRSRGYNFI 194
K ++ V S+ +G+ S A +P ++ K+V E +++ +R G++++
Sbjct: 59 KIQKEVESLI------------GRGQEVSQA--IPHYTPRAKKVTELSMDEARKLGHSYV 104
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL +G A RVL LGV +N A V +L G ++
Sbjct: 105 GTEHILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG-----------------SN 146
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+G +AA S L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP
Sbjct: 147 ETGASAA-GSNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNP 205
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ +
Sbjct: 206 VLIGEPGVGKTAIAEGLAQQIIHNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKV 265
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE
Sbjct: 266 MDEIRQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDE 320
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH T EAI AAV LS
Sbjct: 321 YRKYIEKDAALERRFQPIQVDQPSVDESIQILRGLRDRYEAHHRVSITDEAIEAAVKLSD 380
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYISDR+LPDKAIDL+DEAGS+ + F + PP+ E + + E
Sbjct: 381 RYISDRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKD 429
Query: 555 QGSRLKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPV 609
+ + + AS+ DT + + VE + S + E + V DDIA V S W+G+PV
Sbjct: 430 AAVQSQEFEKAASLRDTEQRLREKVEVTKKSWKEKQGQENSEVSVDDIAMVVSSWTGVPV 489
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+I E L+ +E+ L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTG
Sbjct: 490 SKIAQTETDKLLNMEQLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTG 549
Query: 670 VGKTELAKSLAACYFG 685
VGKTELA++LA FG
Sbjct: 550 VGKTELARALAESIFG 565
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAED-----RHPNGFLESGI 132
+S +T RA K S EA+ LG V T+H+LLGLI E R N G+
Sbjct: 74 VSQAIPHYTPRAKKVTELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNL---GV 130
Query: 133 TIDKAREAVVSIWHST 148
+++KAR+ V+ + S
Sbjct: 131 SLNKARQQVLQLLGSN 146
>gi|375102873|ref|ZP_09749136.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora cyanea NA-134]
gi|374663605|gb|EHR63483.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora cyanea NA-134]
Length = 850
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/618 (41%), Positives = 371/618 (60%), Gaps = 60/618 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG---YQGKEPAEA----------- 153
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A + G +S L+QF +LTA A E +DPVIGR EI+R++Q+L RRTKNNP+L+
Sbjct: 154 -GAGRGEGTPSSSLVLDQFGRNLTAAARENKLDPVIGRNKEIERVMQVLSRRTKNNPVLI 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 213 GEPGVGKTAVVEGLAQNIVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 273 IKTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLEEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ AA L+ RYI
Sbjct: 328 YIEKDAALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD---------DYWQEIRTVQ 548
+DRYLPDKAIDL+DEAG+R I ++ PPD D +E +
Sbjct: 388 NDRYLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADVRREKESAI 436
Query: 549 AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ + +RL+ D+ +G +E D D A V + IA V + W+GIP
Sbjct: 437 DAQDFERAARLR-DEEKTLLGQKAE---REKQWKDGDLDVVAEVDDEQIAEVLANWTGIP 492
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T +E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+
Sbjct: 493 VFKLTEEETTRLLRMEDELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPS 552
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL+K+LA FG
Sbjct: 553 GVGKTELSKALANFLFGE 570
>gi|284989236|ref|YP_003407790.1| ATPase AAA-2 domain-containing protein [Geodermatophilus obscurus
DSM 43160]
gi|284062481|gb|ADB73419.1| ATPase AAA-2 domain protein [Geodermatophilus obscurus DSM 43160]
Length = 841
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 255/612 (41%), Positives = 368/612 (60%), Gaps = 51/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPAAAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A + +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARDSKLDPVIGRAKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVGEPTLTHTIEILKGLRDRYEAHHRISITDGALVAAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I KR ++ PPD + R E
Sbjct: 388 DRFLPDKAIDLIDEAGARMRI---KR--------MTAPPDLREFDDRIAAIRREKESAID 436
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + ++ A D D A V + IA V + W+GIPV ++T
Sbjct: 437 AQDFEKAASLRDKEKTLLSEKAEREKQWKAGDMDVVAEVDDEQIAEVLANWTGIPVFKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ+EA+ ++S+A++R+R GLKDP RP + +F GP+GVGKT
Sbjct: 497 EEETTRLLRMEDELHKRIIGQEEAIKSVSQAIRRTRAGLKDPRRPGGSFIFAGPSGVGKT 556
Query: 674 ELAKSLAACYFG 685
ELAK+LA FG
Sbjct: 557 ELAKALAQFLFG 568
>gi|326203327|ref|ZP_08193192.1| ATPase AAA-2 domain protein [Clostridium papyrosolvens DSM 2782]
gi|325986585|gb|EGD47416.1| ATPase AAA-2 domain protein [Clostridium papyrosolvens DSM 2782]
Length = 810
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/613 (42%), Positives = 365/613 (59%), Gaps = 53/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+++RFTE+A +A+ FSQ+ A LG + V T+H+LLGL+ E L GIT +K
Sbjct: 1 MYQRFTEKAERAIGFSQQAAVDLGHNYVGTEHILLGLVKEGTGVASRVLLGQGITEEKIL 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + + + + T +P F+ TKRV E A + +R G +I EH
Sbjct: 61 KEIEELIGKGDAEGT-------QPVG------FTPRTKRVLELAFKEARRMGQGYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LG+ + A R++ LGVD L L K + E S
Sbjct: 108 LLLGIMKEGESVAVRIMMDLGVDPQKLLN-----------------ELIKILTEESPGSN 150
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ + + L QF DLT A + IDPVIGR+ EI+R+IQIL RRTKNNP L+G
Sbjct: 151 GSTKSNSSNSNTPTLNQFGRDLTDMARDGKIDPVIGRDKEIERVIQILSRRTKNNPCLIG 210
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ +P L KR+++LD+ ++AGAK RGE E R+ + EI
Sbjct: 211 EPGVGKTAIAEGLAQKIVEGNIPEILSDKRVVTLDLSSMVAGAKYRGEFEDRLKKAMEEI 270
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+K+ +VILFIDE+HT++G+G +D SN+LKPSL RGE+Q I +TT +E+R
Sbjct: 271 RKAVNVILFIDELHTIVGAGAA-----EGAIDASNILKPSLARGEIQVIGATTLNEYRKH 325
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS+E+AV IL G+R+KYEAHH K T +AI AAV L RYI+
Sbjct: 326 IEKDAALERRFQPITVGEPSKEEAVEILKGVRDKYEAHHRVKITDDAIEAAVKLGDRYIT 385
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAIDL+DEA SR ++ F ++ E++ LSK +D IR E
Sbjct: 386 DRFLPDKAIDLIDEAASRIRLKTFTAPPDLKEMEEKVEKLSKEKEDA---IRC----QEF 438
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ +R++ DD + ++ + + + D V DDIA + + W+GIPV+++
Sbjct: 439 EKAARIR-DDEQKLKNELDKVRDQWRQKNQTKTD---TVTEDDIADIVASWTGIPVKRLA 494
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE L KRVIGQDEAV +IS+A++R RVGLKDP RP + +F GPTGVGKT
Sbjct: 495 EEESERLLKMEETLHKRVIGQDEAVKSISKAIRRGRVGLKDPKRPVGSFIFMGPTGVGKT 554
Query: 674 ELAKSLAACYFGS 686
EL K+LA FG
Sbjct: 555 ELCKALAEAMFGD 567
>gi|422324030|ref|ZP_16405067.1| ATP-dependent Clp protease ATP-binding subunit [Rothia mucilaginosa
M508]
gi|353344624|gb|EHB88930.1| ATP-dependent Clp protease ATP-binding subunit [Rothia mucilaginosa
M508]
Length = 855
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 258/619 (41%), Positives = 368/619 (59%), Gaps = 59/619 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI E LES G+T++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHLLLGLIHEGEGIGARALESLGVTLNAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I P + +PF+ K+V E ++ + + +I EH
Sbjct: 61 EQVQDIVGPG-------------PQAPNGHIPFTPRAKKVLELSMREAIQLNHGYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LG+ ++G A +VL +LG + + + + G + A NS G
Sbjct: 108 ILLGMVRANEGVANQVLVKLGAEPAAVRQAVMDLISGYPGNNSGDKETAGVGAGNSREGT 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A ++ L+QF +LTA A E +DPVIGR E++R++Q+L RRTKNNP+L+G
Sbjct: 168 PAG--------STILDQFGRNLTAAAREGELDPVIGRHKEMERVMQVLSRRTKNNPVLIG 219
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 220 EPGVGKTAVVEGLAQAIVHGDVPETLKDKHLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 279
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 280 RSRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKH 334
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPSQE AV+IL G+R+KYEAHH T EAI AV+L+ARYIS
Sbjct: 335 IEKDAALERRFQPIQVEEPSQELAVQILKGVRDKYEAHHRVTITDEAIETAVNLAARYIS 394
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKA+DL+DEAG+R I KR ++ PP+ ++ + E R
Sbjct: 395 DRFLPDKAVDLIDEAGARLRI---KR--------MTAPPE--------IKLLDEKAAKLR 435
Query: 559 LKYDDVV--------ASMGDTSEIVV----ESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
+ +D + A + D + V+ E+ D V P+ IA V + +G
Sbjct: 436 QQKEDAINSQDYEKAAGLRDQEQKVLAEKEEAEKAWREGGDAFGTVTPEVIAEVLAASTG 495
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV +IT +E L+ +E++L KRVIGQ+ A+AA+SRA++R+R GLKDP RP + +F G
Sbjct: 496 VPVYKITEEESTRLLTMEQELHKRVIGQEHAIAALSRAIRRTRAGLKDPRRPGGSFIFAG 555
Query: 667 PTGVGKTELAKSLAACYFG 685
PTGVGKTELAK+LA FG
Sbjct: 556 PTGVGKTELAKALAEFLFG 574
>gi|389573541|ref|ZP_10163615.1| negative regulator of genetic competence ClpC/mecB [Bacillus sp. M
2-6]
gi|388426856|gb|EIL84667.1| negative regulator of genetic competence ClpC/mecB [Bacillus sp. M
2-6]
Length = 811
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 274/616 (44%), Positives = 378/616 (61%), Gaps = 63/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F RFTERA K + +Q EA LG + T+H+LLGL+ R G LE+ G+ D
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHKNIGTEHILLGLV---REGEGIAAKALEALGLVSD 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMP-FSISTKRVFEAAVEYSRSRGYNFI 194
K ++ V S+ +G+ S A +P ++ K+V E +++ +R G++++
Sbjct: 59 KIQKEVESLI------------GRGQEVSQA--IPHYTPRAKKVTELSMDEARKLGHSYV 104
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL +G A RVL LGV +N A V +L G ++
Sbjct: 105 GTEHILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG-----------------SN 146
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+G +AA S L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP
Sbjct: 147 ETGASAA-GSNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNP 205
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ +
Sbjct: 206 VLIGEPGVGKTAIAEGLAQQIIHNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKV 265
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE
Sbjct: 266 MDEIRQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDE 320
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH T EAI AAV LS
Sbjct: 321 YRKYIEKDAALERRFQPIQVDQPSVDESIQILRGLRDRYEAHHRVSITDEAIEAAVKLSD 380
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYISDR+LPDKAIDL+DEAGS+ + F + PP+ E + + E
Sbjct: 381 RYISDRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKD 429
Query: 555 QGSRLKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPV 609
+ + + AS+ DT + + VE + S + E + V DDIA V S W+G+PV
Sbjct: 430 AAVQSQEFEKAASLRDTEQRLREKVEVTKKSWKEKQGQENSEVSVDDIAMVVSSWTGVPV 489
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+I E L+ +E+ L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTG
Sbjct: 490 SKIAQTETDKLLNMEQLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTG 549
Query: 670 VGKTELAKSLAACYFG 685
VGKTELA++LA FG
Sbjct: 550 VGKTELARALAESIFG 565
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAED-----RHPNGFLESGI 132
+S +T RA K S EA+ LG V T+H+LLGLI E R N G+
Sbjct: 74 VSQAIPHYTPRAKKVTELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNL---GV 130
Query: 133 TIDKAREAVVSIWHST 148
+++KAR+ V+ + S
Sbjct: 131 SLNKARQQVLQLLGSN 146
>gi|308171976|ref|YP_003918681.1| class III stress response-like ATPase, AAA+ superfamily [Bacillus
amyloliquefaciens DSM 7]
gi|384157699|ref|YP_005539772.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus amyloliquefaciens TA208]
gi|384162492|ref|YP_005543871.1| class III stress response ATPase [Bacillus amyloliquefaciens LL3]
gi|384166714|ref|YP_005548092.1| class III stress response-related ATPase [Bacillus
amyloliquefaciens XH7]
gi|307604840|emb|CBI41211.1| class III stress response-related ATPase, AAA+ superfamily
[Bacillus amyloliquefaciens DSM 7]
gi|328551787|gb|AEB22279.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus amyloliquefaciens TA208]
gi|328910047|gb|AEB61643.1| class III stress response ATPase [Bacillus amyloliquefaciens LL3]
gi|341825993|gb|AEK87244.1| class III stress response-related ATPase, AAA+ superfamily
[Bacillus amyloliquefaciens XH7]
Length = 811
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 272/616 (44%), Positives = 371/616 (60%), Gaps = 63/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F RFTERA K + +Q EA LG + T+H+LLGL+ R G LE+ G+ D
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLV---REGEGIAFKALEALGLNSD 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMP-FSISTKRVFEAAVEYSRSRGYNFI 194
K ++ V S+ G+ S +P ++ K+V E +++ +R G++++
Sbjct: 59 KMQKEVESLI--------------GRGQESTTSVPHYTPRAKKVIELSMDEARKLGHSYV 104
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL +G A RVL LGV +N + L G E
Sbjct: 105 GTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL---------------GSNETG 149
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
SG A S T L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP
Sbjct: 150 TSG--AGTNSSANT--PTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNP 205
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ +
Sbjct: 206 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKV 265
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE
Sbjct: 266 MDEIRQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDE 320
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + EPS +++++IL GLR++YEAHH T EAI AAV LS
Sbjct: 321 YRKYIEKDAALERRFQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSD 380
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYISDR+LPDKAIDL+DEAGS+ + F + PP+ E + + E
Sbjct: 381 RYISDRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKD 429
Query: 555 QGSRLKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPV 609
+ + + AS+ DT + + VE + + + E + V +DIA V S W+G+PV
Sbjct: 430 AAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMVVSSWTGVPV 489
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+I E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTG
Sbjct: 490 SKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTG 549
Query: 670 VGKTELAKSLAACYFG 685
VGKTELA++LA FG
Sbjct: 550 VGKTELARALAESIFG 565
>gi|51894268|ref|YP_076959.1| class III stress response-related ATPase [Symbiobacterium
thermophilum IAM 14863]
gi|51857957|dbj|BAD42115.1| class III stress response-related ATPase [Symbiobacterium
thermophilum IAM 14863]
Length = 833
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 270/620 (43%), Positives = 372/620 (60%), Gaps = 61/620 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F R+TERA + ++ +Q EA+ L D V T+HLLLGLI E GI +++ R
Sbjct: 1 MFSRYTERAQRVIVLAQDEARRLNYDYVGTEHLLLGLIREGEGIAAKALQSLGIQLEQVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVF-EAAVEYSRSRGYNFIAPE 197
V + + SS ++ F+ K+V E A+E +R G+N++ E
Sbjct: 61 AEVEKMIGKGSA-------------SSRGEIGFTPRAKKVMVELAIEEARLLGHNYVGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A +VL+ LG D+ + + L G P G +S+ G
Sbjct: 108 HILLGLIREGEGVAAQVLQNLGADLERVRNQVIHLLGGV-------PHPPAG---SSMPG 157
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+A +K P +T S L+QF DL A + +DPVIGRE EI+R+IQIL RRTKNNP+L+
Sbjct: 158 -SAKVKGP-KTSTSTLDQFGRDLNQMARDGKLDPVIGREKEIERVIQILTRRTKNNPVLI 215
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RIV VP L KR+++LD+ L+AG+K RGE E R+ ++ E
Sbjct: 216 GEPGVGKTAIAEGLAQRIVDGRVPEILKDKRVVALDLASLVAGSKYRGEFEERLKKVLEE 275
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ +G+VILFIDE+HT+IG+G +D SN+LKP+L RGELQ I +TT DE+R
Sbjct: 276 IRNAGNVILFIDELHTIIGAGAA-----EGAIDASNILKPALARGELQAIGATTIDEYRK 330
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV++ EPS EDA++IL GLR++YEAHH + T AI AAV LS RY+
Sbjct: 331 YVEKDAALERRFQPVMVEEPSPEDAIQILKGLRDRYEAHHRVEITDAAIEAAVRLSDRYV 390
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAMHE 552
+DR+LPDKA+DL+DEA SR + F PP +D +E+R +
Sbjct: 391 TDRFLPDKAVDLIDEAASRVRLSTF-----------VAPPNLKELEDKLEEVR--KEKEA 437
Query: 553 VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDE------PAVVGPDDIAAVASLWSG 606
VQG + A + D E ++ L ++ + VV +DIA + S W+G
Sbjct: 438 AVQGQEF---EKAARLRD-KETKLKEELERQKNEWQQKKVTAKCVVNEEDIATIVSQWTG 493
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IP ++T DE L+ LE+ L ++V+GQDEAVAA++RA++R+R GLKDP RP + +F G
Sbjct: 494 IPATKLTMDESQRLLNLEKVLHEKVVGQDEAVAAVARAIRRARAGLKDPKRPIGSFIFLG 553
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTG GKT LAK+LA FG
Sbjct: 554 PTGTGKTHLAKALAEALFGD 573
>gi|297545353|ref|YP_003677655.1| ATPase [Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296843128|gb|ADH61644.1| ATPase AAA-2 domain protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 816
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 263/615 (42%), Positives = 365/615 (59%), Gaps = 57/615 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKA 137
++F RFTERA KA+ +Q EA+S + V T+H+LLGL+ E+ + G+T +
Sbjct: 2 AMFGRFTERAQKALYLAQEEARSFYHNYVGTEHILLGLLKENEGIAARTLKKLGVTYETT 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
RE V+S+ N P P KRV E ++ +R ++I E
Sbjct: 62 REKVLSLIGMGNI-----------PGDVVGYTP---RAKRVLELSLSEARRFNTSYIGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LG+ +G A R+L G+D N + V L EPS G
Sbjct: 108 HILLGILREGEGVAVRILMEQGIDFNRVREEIVKMLN-------EEPS-----------G 149
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A T L QF DLT A + +DPVIGRE EI+R+IQIL RRTKNNP+L+
Sbjct: 150 GPAKATKVKNTNTPTLNQFGRDLTELARDGKLDPVIGREKEIERVIQILSRRTKNNPVLI 209
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI EGLA +IV+ E+P L KR+++LDM ++AG K RGE E R+ T+++E
Sbjct: 210 GEPGVGKTAIVEGLAQKIVEGEIPEILKDKRVVTLDMASMVAGTKYRGEFEDRLKTVLNE 269
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+ K+G+VILFIDE+HTLIG+G +D SN+LKP+L RGE+Q + +TT +E+R
Sbjct: 270 VIKAGNVILFIDEMHTLIGAGAA-----EGAIDASNILKPALARGEIQVVGATTLEEYRK 324
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQP+++ EP+ E+ + IL GLR+KYEAHH K T EA+ AA LS RYI
Sbjct: 325 YVERDPALERRFQPIIVDEPTVEETIEILKGLRDKYEAHHRVKITDEALEAAARLSHRYI 384
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDL+DEA SR ++ ++ PP+ E + + E +
Sbjct: 385 ADRFLPDKAIDLIDEAASRVRLK-----------TVTAPPEIKELEDKINDLIKEKEEAI 433
Query: 558 RLKYDDVVASMGDTSEIVVE------SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + + A + D + + E + S +E + VGP++IA V SLW+GIPV++
Sbjct: 434 KTQEYEKAAKIRDEEQKLREELEKLKAKWQQNSLSNEKS-VGPEEIAQVVSLWTGIPVKK 492
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ +E L+ LEE L +RVIGQDEAV A++RA++R+RVGLKDP RP + +F GPTGVG
Sbjct: 493 LAEEESERLLHLEEILHERVIGQDEAVEAVARAIRRARVGLKDPKRPIGSFIFLGPTGVG 552
Query: 672 KTELAKSLAACYFGS 686
KTEL K+LA FG
Sbjct: 553 KTELTKALAEALFGD 567
>gi|25029085|ref|NP_739139.1| endopeptidase Clp ATP-binding chain C [Corynebacterium efficiens
YS-314]
gi|259505920|ref|ZP_05748822.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
efficiens YS-314]
gi|23494372|dbj|BAC19339.1| putative endopeptidase Clp ATP-binding chain C [Corynebacterium
efficiens YS-314]
gi|259166401|gb|EEW50955.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
efficiens YS-314]
Length = 927
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 263/622 (42%), Positives = 374/622 (60%), Gaps = 47/622 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + KP + +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGS------------KP--TTGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKG------VR 251
+ LGL +G A +VL +LG D+ + + L G +G P +G V
Sbjct: 107 FLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGQGGSPDSPQGGQGGDAVG 166
Query: 252 ENSISGKTAALKSPG-RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT 310
S G A G R+ + L+QF +LT A + +DPV+GR+ EI+RI+Q+L RRT
Sbjct: 167 AGSAPGGRATGSGAGERSNSLVLDQFGRNLTQAAKDGKLDPVVGRDKEIERIMQVLSRRT 226
Query: 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370
KNNP+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R
Sbjct: 227 KNNPVLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQVYSLDLGSLVAGSRYRGDFEER 286
Query: 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430
+ ++ EI + GD+ILFIDE+HTL+G+G +G +D ++LLKP L RGELQ I +T
Sbjct: 287 LKKVLKEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASLLKPKLARGELQTIGAT 341
Query: 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490
T DE+R EKD AL RRFQPV + EPS E ++ IL GLR++YEAHH T A+ AA
Sbjct: 342 TLDEYRKHIEKDAALERRFQPVQVPEPSVELSIEILKGLRDRYEAHHRVSITDGALVAAA 401
Query: 491 HLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR----- 545
LS RYI+DR+LPDKA+DL+DEAG+R I KR ++ + D+ ++R
Sbjct: 402 QLSDRYINDRFLPDKAVDLIDEAGARMRI---KRMTAPESL---REVDERIADVRREKEA 455
Query: 546 TVQAMH-EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW 604
+ A E G R D +G+ E + + D +E A VG + IA V + W
Sbjct: 456 AIDAQDFEKAAGLR----DKERKLGE--ERAEKEKQWRSGDLEEIAEVGEEQIAEVLATW 509
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+GIPV ++T E L+ +EE+L KR+IGQDEAV A+SRA++R+R GLKDP RP+ + +F
Sbjct: 510 TGIPVFKLTEAESSRLLNMEEELHKRIIGQDEAVKAVSRAIRRTRAGLKDPKRPSGSFIF 569
Query: 665 CGPTGVGKTELAKSLAACYFGS 686
GP+GVGKTEL+K+LA FG
Sbjct: 570 AGPSGVGKTELSKALAEFLFGD 591
>gi|312879531|ref|ZP_07739331.1| ATPase AAA-2 domain protein [Aminomonas paucivorans DSM 12260]
gi|310782822|gb|EFQ23220.1| ATPase AAA-2 domain protein [Aminomonas paucivorans DSM 12260]
Length = 835
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 263/627 (41%), Positives = 380/627 (60%), Gaps = 49/627 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES--GITIDKAR 138
+++ FTER K V + REA LG D++ T+H+LLGL+AE + G+ +++ R
Sbjct: 1 MWQFFTERGKKVVQLAHREALRLGHDVIGTEHILLGLLAEGEGVAAQVLGAFGLDLEELR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ S +G+P +P S KRV + ++ +R G N++ EH
Sbjct: 61 GQIES------------TVGKGQPRERPVDLPLSPRAKRVLDLSMREARGMGVNYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL LG+D+ + S L G P A+G RE + G
Sbjct: 109 ILLGLLAEGEGVAAQVLGSLGLDLPKVRQEVQSFLSGA------SPDYAEGGREPAAEGD 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
K G ++ L+Q ++L+ A + +DPVIGR EIQR++QIL RRTKNNP+L+G
Sbjct: 163 ----KKNGSSKTPTLDQLGIELSDMAKKGELDPVIGRAKEIQRLVQILSRRTKNNPVLIG 218
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTAI EGLA RI+ E+P L KR++ L++G L+AG K RGE E R+ L+ E+
Sbjct: 219 DPGVGKTAIVEGLAQRIIAGEIPEVLKGKRVVQLNVGNLVAGTKYRGEFEERMRKLVKEL 278
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ VILFIDE+HTL+G+G G +G +D +N+LKPSL RGE Q I +TT DE+R
Sbjct: 279 REAKGVILFIDEIHTLVGAG----GAEGA-VDAANILKPSLARGEFQVIGATTLDEYRKY 333
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS+ED V+IL GLR++YEAHH K +A+ AA LS RYI+
Sbjct: 334 IEKDAALERRFQPIQVEEPSEEDTVKILAGLRDRYEAHHRVKLCDDALAAAARLSKRYIT 393
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
+R+LPDKAIDL+DEA +RA ++ + P+D R+++ + + + +
Sbjct: 394 ERFLPDKAIDLIDEAAARARLKTM------------EAPEDLKDLERSLEGIRKEKESAV 441
Query: 559 LKYD-DVVASMGDTSEIVVES------SLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + + A M D + E S + + +EP +VG +DIA + S W+GIPV Q
Sbjct: 442 MAQEFEKAARMRDEERRLFEEIEHRRKSWQNDRNQEEP-LVGAEDIAHIVSEWTGIPVLQ 500
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +EE++ +R++GQDEA+ A++RAV+R+R GLKDP RP + LF GPTGVG
Sbjct: 501 LTEEEAARLLRMEEEVHRRMVGQDEAIGAVARAVRRARSGLKDPKRPVGSFLFLGPTGVG 560
Query: 672 KTELAKSLAACYFGSVRIHYLFFPSPF 698
KTELA+SLAA FGS F S F
Sbjct: 561 KTELARSLAAFLFGSEEALVRFDMSEF 587
>gi|271970316|ref|YP_003344512.1| class III stress response-related ATPase [Streptosporangium roseum
DSM 43021]
gi|270513491|gb|ACZ91769.1| class III stress response-related ATPase [Streptosporangium roseum
DSM 43021]
Length = 835
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/614 (41%), Positives = 373/614 (60%), Gaps = 53/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQS-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A G +E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLHG---YQGKEPAAAGGPQEAAPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLVG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGL+ +IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLSQKIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLSHTIEILKGLRDRYEAHHRVSITDGALVAAAQLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD +Y ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREYDEKIANVRRDKESAID 436
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
++ ++ A ++ ++ A D D A V + IA V + +GIPV ++
Sbjct: 437 AQ-DFEKAAALRDQEKQLQLKRERREKEWKAGDMDVVAEVTEELIAEVLATATGIPVFKL 495
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T +E L+ +E++L KR+IGQD+A+ +SR+++R+R GLKDP RP + +F GP+GVGK
Sbjct: 496 TEEESQRLLRMEDELHKRIIGQDDAIKGLSRSIRRTRAGLKDPRRPGGSFIFAGPSGVGK 555
Query: 673 TELAKSLAACYFGS 686
TEL+K+LA FG
Sbjct: 556 TELSKALAEFLFGD 569
>gi|154498690|ref|ZP_02037068.1| hypothetical protein BACCAP_02681 [Bacteroides capillosus ATCC
29799]
gi|150272429|gb|EDM99623.1| ATPase family associated with various cellular activities (AAA)
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 837
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/620 (41%), Positives = 366/620 (59%), Gaps = 44/620 (7%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAREAV 141
RFT+RA A+ +Q A LG V ++HLLLGL E++ +G++ + R A+
Sbjct: 5 RFTQRARTALTLAQTCAAELGHSYVGSEHLLLGLAREEQGMAARVLRTAGLSPETIRTAI 64
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ A G+P + K++ E A+ S G +++ EH+ L
Sbjct: 65 AGMVGV--------GAPAGQPSQG-----LTPRCKKIIELALAQSARLGCSYVGTEHLLL 111
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
G+ DG A RV+ GVD L +S L G+ A R P + R+ + G+
Sbjct: 112 GILQEGDGVAARVIADSGVDARRLYGDVMSALGGDGASFYRSPGRPRQERDFTEGGRDTK 171
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
L +QF DLT A+ L+DPV+GR+ EI+R+IQIL RRTKNNP L+GE G
Sbjct: 172 LA----------DQFSKDLTRLAAGHLLDPVVGRDKEIRRVIQILSRRTKNNPALIGEPG 221
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEG+A+RI EVP L KR++SLD+ ++AG K RGE E RV +++E++++
Sbjct: 222 VGKTAIAEGMALRIAAGEVPDELRHKRLLSLDLSSMVAGTKYRGEFEERVKNILAEVRRA 281
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G++ILFIDE+HT++G+G+ +G +D +N++KP+LGRG+LQ I +TT DE+R EK
Sbjct: 282 GNIILFIDELHTIVGAGSA----EGA-IDAANIIKPALGRGDLQVIGATTLDEYRRYIEK 336
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQPV ++EP + A IL G+R++YEAHH +AI AAV LSARYI DR
Sbjct: 337 DAALERRFQPVTVAEPDHQTAAAILRGVRDRYEAHHKLTIRDDAIEAAVALSARYIGDRR 396
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561
LPDKAIDL+DEA SR +E L+ PP E R +A E + R +
Sbjct: 397 LPDKAIDLMDEAASRVRMER-----------LATPPALRQLEERAERACQEKEEAIRGQD 445
Query: 562 DDVVASMGDT-SEIVVESSLPSAS--DDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
+ A + D ++ E L A+ V +D+AAV + W+G+PV +T +E
Sbjct: 446 FEKAAMLRDAEADFRKELELKKAALRAGQRGGCVSAEDVAAVVAEWTGVPVTTLTQEESQ 505
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+GLEE+L ++V+GQ++AV A++RAV+R RVGLK+P RPT LF GPTGVGKTEL K+
Sbjct: 506 RLMGLEEELHRQVVGQEDAVKAVARAVRRGRVGLKEPGRPTGVFLFLGPTGVGKTELCKA 565
Query: 679 LAACYFGSVRIHYLFFPSPF 698
LAA FGS F S +
Sbjct: 566 LAAALFGSADALLRFDMSEY 585
>gi|138893757|ref|YP_001124210.1| negative regulator of genetic competence ClpC/MecB [Geobacillus
thermodenitrificans NG80-2]
gi|196251133|ref|ZP_03149812.1| ATPase AAA-2 domain protein [Geobacillus sp. G11MC16]
gi|134265270|gb|ABO65465.1| Negative regulator of genetic competence ClpC/MecB [Geobacillus
thermodenitrificans NG80-2]
gi|196209374|gb|EDY04154.1| ATPase AAA-2 domain protein [Geobacillus sp. G11MC16]
Length = 811
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/612 (42%), Positives = 362/612 (59%), Gaps = 55/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGLI E + G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLIREGEGIAAKALMALGLGPDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ G+ + + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI--------------GRGNEVSHTIHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N + L G S++ +
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL-------GSNESVSGHGGGGASHVN 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T L S R DLTA A E +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 161 TPTLDSLAR-----------DLTAIAREGRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 210 EPGVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 270 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKY 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E++++IL GLR++YEAHH + EAI AV LS RYI+
Sbjct: 325 IEKDAALERRFQPIHVDEPTVEESIQILKGLRDRYEAHHRVSISDEAIVQAVKLSDRYIT 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + F + PP E + + E +
Sbjct: 385 DRFLPDKAIDLIDEACSKVRLRSF-----------TAPPKLKELEQKLEEVRKEKDAAVQ 433
Query: 559 LKYDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + + E + E + V +DIAAV S W+GIPV ++
Sbjct: 434 SQEFEKAASLRDMEQRLREELEETKRAWKEKQGQENSEVTVEDIAAVVSSWTGIPVSKLA 493
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L RV+GQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 494 ETETERLLKLEEILHARVVGQDEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 553
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 554 ELARALAEAMFG 565
>gi|334564013|ref|ZP_08517004.1| ATP-dependent Clp protease [Corynebacterium bovis DSM 20582]
Length = 838
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 373/616 (60%), Gaps = 43/616 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA++L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARALNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I S G P S +PF+ K+V E A+ + G+ +I EH
Sbjct: 61 TEVEDIIGSG-----------GHPPSGY--IPFTPRAKKVLELALREALQLGHKYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG----ELAKEGREPSLAKGVRENS 254
I LGL +G A +VL +LG D++ + + L G E EG EP+ A
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLSRVRQQVIQLLSGYEGAEPESEGDEPATAGVGAGAE 167
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
K ++ + L+QF +LT A + +DPV+GRE E++RI+Q+L RRTKNNP
Sbjct: 168 GGAKIGQ-----KSNSLVLDQFGRNLTQAARDGKLDPVVGREKEVERIMQVLSRRTKNNP 222
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ +
Sbjct: 223 VLIGEPGVGKTAVVEGLALAIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKV 282
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI + GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT +E
Sbjct: 283 LKEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLEE 337
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS ED V IL GLR++YEAHH T A+ AA LS+
Sbjct: 338 YRKHIEKDAALERRFQPVQVPEPSVEDTVEILKGLRDRYEAHHRVSITDGALVAAAQLSS 397
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM---- 550
RYI+DR+LPDKA+DL+DEAG+R I+ K Q D+ E+R +
Sbjct: 398 RYINDRFLPDKAVDLIDEAGARMRIKRMTAPKSIQVV------DEKIAEVRRRKEAAIDD 451
Query: 551 HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ + + L+ D+ T E + A + ++ A VG + IA V W+GIPV
Sbjct: 452 QDFEKAAALRDDERTL----TEEREEKEKQWRAGELEDVAEVGEEQIAEVLGNWTGIPVV 507
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L+ +E++L KR+IGQ++AV A+SRA++R+R GLKDP RP+ + +F GP+GV
Sbjct: 508 KLTEEESSRLLRMEDELHKRIIGQEDAVRAVSRAIRRTRAGLKDPKRPSGSFIFAGPSGV 567
Query: 671 GKTELAKSLAACYFGS 686
GKTEL+K+LA FG
Sbjct: 568 GKTELSKALAEFLFGD 583
>gi|455652535|gb|EMF31161.1| Clp-family ATP-binding protease [Streptomyces gancidicus BKS 13-15]
Length = 841
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 261/616 (42%), Positives = 372/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +EE+L KRVIGQD+AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEEELHKRVIGQDDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|429503620|ref|YP_007184804.1| Clp protease ATP-binding subunit [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429485210|gb|AFZ89134.1| Clp protease ATP-binding subunit [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 810
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 269/612 (43%), Positives = 373/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ +G+ S + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI------------GRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G S G +S SG
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG---------SNETG---SSASGT 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 155 NSNANTP------TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH T EAI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + F + PP+ E + + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + VE + + + E + V +DIA V S W+G+PV +I
Sbjct: 433 SQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMVVSSWTGVPVSKIA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESIFG 564
>gi|358457648|ref|ZP_09167865.1| ATPase AAA-2 domain protein [Frankia sp. CN3]
gi|357079193|gb|EHI88635.1| ATPase AAA-2 domain protein [Frankia sp. CN3]
Length = 836
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 261/617 (42%), Positives = 374/617 (60%), Gaps = 58/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G K EP+ A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKG--EPATAGGPSEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTAAAREAKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSVAHTIEILKGLRDRYEAHHRVSITDAALVAAASLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ + I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDERIANVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ A D D A VG ++IA V ++W+GIPV
Sbjct: 434 SAIDAQDFEKAASLRDKEKTLLAEKAKREKEWKAGDMDVVAEVGDEEIAEVLAIWTGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L +RVIGQ++A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEETARLLRMEDELHRRVIGQEQAIKAVSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKTLAEFLFGD 570
>gi|154684604|ref|YP_001419765.1| ClpC [Bacillus amyloliquefaciens FZB42]
gi|375360776|ref|YP_005128815.1| ATP-dependent Clp protease ATP-binding subunit clpC [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|384263716|ref|YP_005419423.1| class III stress response-related ATPase ClpC [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387896613|ref|YP_006326909.1| Clp protease ATP-binding subunit [Bacillus amyloliquefaciens Y2]
gi|394994757|ref|ZP_10387464.1| ClpC [Bacillus sp. 916]
gi|451348524|ref|YP_007447155.1| Clp protease ATP-binding subunit [Bacillus amyloliquefaciens IT-45]
gi|452854149|ref|YP_007495832.1| class III stress response-related ATPase, AAA+ superfamily
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
gi|154350455|gb|ABS72534.1| ClpC [Bacillus amyloliquefaciens FZB42]
gi|371566770|emb|CCF03620.1| ATP-dependent Clp protease ATP-binding subunit clpC [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|380497069|emb|CCG48107.1| class III stress response-related ATPase ClpC [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387170723|gb|AFJ60184.1| Clp protease ATP-binding subunit [Bacillus amyloliquefaciens Y2]
gi|393804324|gb|EJD65736.1| ClpC [Bacillus sp. 916]
gi|449852282|gb|AGF29274.1| Clp protease ATP-binding subunit [Bacillus amyloliquefaciens IT-45]
gi|452078409|emb|CCP20159.1| class III stress response-related ATPase, AAA+ superfamily
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
Length = 810
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 269/612 (43%), Positives = 373/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ +G+ S + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI------------GRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G S G +S SG
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG---------SNETG---SSASGT 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 155 NSNANTP------TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH T EAI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + F + PP+ E + + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + VE + + + E + V +DIA V S W+G+PV +I
Sbjct: 433 SQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMVVSSWTGVPVSKIA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESIFG 564
>gi|358052016|ref|ZP_09146007.1| endopeptidase [Staphylococcus simiae CCM 7213]
gi|357258496|gb|EHJ08562.1| endopeptidase [Staphylococcus simiae CCM 7213]
Length = 816
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 264/626 (42%), Positives = 358/626 (57%), Gaps = 82/626 (13%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFDITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L +++ A V L P + + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGN--------PEMNNKNAQTS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+ T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KANNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV+ EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EP+ ED V IL GLR++YEAHH + EA+ AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPTVEDTVEILKGLRDRYEAHHRINISDEALEAAVRLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDY 540
RY+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLKSHTTPTNLKEIEQEIEKVKNEKDAAV-------H 432
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
QE + + +Y++ +T + S + +DIA V
Sbjct: 433 AQEFENAANLRDKQTKLEKQYEEAKNEWKNTQNGMSTS-------------LSEEDIAEV 479
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+GIP+ +I E L+GLE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP
Sbjct: 480 IAGWTGIPLTKINETESEKLLGLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIG 539
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGS 686
+ +F GPTGVGKTELA++LA FG
Sbjct: 540 SFIFLGPTGVGKTELARALAESMFGD 565
>gi|336324767|ref|YP_004604733.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
resistens DSM 45100]
gi|336100749|gb|AEI08569.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
resistens DSM 45100]
Length = 903
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 268/659 (40%), Positives = 388/659 (58%), Gaps = 66/659 (10%)
Query: 68 CARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNG 126
RK+R+ ++FERFT+RA + V+ +Q E ++L + + T+H+LLGLI E
Sbjct: 7 STRKKREY----TMFERFTDRARRVVVLAQDEGRALNHNYIGTEHILLGLIQEGEGVAAK 62
Query: 127 FLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEY 185
LES GI++D R V I G P S +PF+ K+V E A+
Sbjct: 63 ALESMGISLDAVRTEVKEI-----------IGTGGHPPSGY--IPFTPRAKKVLELALRE 109
Query: 186 SRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS 245
+ G+ +I EH+ LGL +G A +VL +LG D+ + + L G EG E S
Sbjct: 110 ALQLGHKYIGTEHLLLGLIREGEGVAAQVLVKLGADLARVRQQVIQLLSGYEGNEGAEDS 169
Query: 246 ----LAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQR 301
A GV NS G + K ++ + L+QF +LT A + +DPV+GRE EI+R
Sbjct: 170 DGEPAAAGVGSNS--GAPSGSKIGQKSNSLVLDQFGRNLTQAAKDGKLDPVVGREKEIER 227
Query: 302 IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361
++Q+L RRTKNNP+L+GE GVGKTA+ EGLA+ IV VP L K++ SLD+G L+AG+
Sbjct: 228 VMQVLSRRTKNNPVLIGEPGVGKTAVVEGLALDIVNGRVPETLKDKQLYSLDLGSLVAGS 287
Query: 362 KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421
+ RG+ E R+ ++ EI + GD+ILFIDE+HTL+G+G +G +D +++LKP L R
Sbjct: 288 RYRGDFEERLKKVLKEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPKLAR 342
Query: 422 GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKF 481
GELQ I +TT DE+R EKD AL RRFQPV + EPS + + IL GLR++YEAHH
Sbjct: 343 GELQTIGATTLDEYRKHIEKDAALERRFQPVQVPEPSVDLTIEILKGLRDRYEAHHRVSI 402
Query: 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYW 541
T A+ AA L+ RYI+DR+LPDKA+DL+DEAG+R I KR ++ P
Sbjct: 403 TDGALAAAAQLADRYITDRFLPDKAVDLIDEAGARMRI---KR--------MTAP----- 446
Query: 542 QEIRTVQAMHEVVQGSRLKYDDVV--------ASMGDTSEIVVESSLPS-----ASDDDE 588
+++Q + E + R K + + A++ D + E A + DE
Sbjct: 447 ---KSIQEVDEKIAAVRTKKEAAIDEQDFEKAAALRDDERKLTEEREEKEKAWRAGELDE 503
Query: 589 PAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRS 648
A VG + IA V W+GIPV ++T +E L+ +E++L KR+IGQ++AV A+SRA++R+
Sbjct: 504 VAEVGEEQIAEVMGTWTGIPVFKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIRRT 563
Query: 649 RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
R GLKDP RP+ + +F GP+GVGKTEL+K+LA FG V+I F F + ++
Sbjct: 564 RAGLKDPKRPSGSFIFAGPSGVGKTELSKALAEFLFGEDDALVQIDMGEFHDKFTASRL 622
>gi|296333083|ref|ZP_06875537.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305672785|ref|YP_003864456.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus subtilis subsp. spizizenii str. W23]
gi|350264184|ref|YP_004875491.1| genetic competence negative regulator ClpC/MecB [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|296149699|gb|EFG90594.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305411028|gb|ADM36146.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus subtilis subsp. spizizenii str. W23]
gi|349597071|gb|AEP84859.1| Negative regulator of genetic competence ClpC/MecB [Bacillus
subtilis subsp. spizizenii TU-B-10]
Length = 810
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 269/612 (43%), Positives = 373/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ +G+ S + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI------------GRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G S G +S +G
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG---------SNETG---SSATGT 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 155 NSNANTP------TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH T +AI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + F + PP+ E + + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + VE + S + E + V DDIA V S W+G+PV +I
Sbjct: 433 SQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESIFG 564
>gi|311070733|ref|YP_003975656.1| ClpC protein [Bacillus atrophaeus 1942]
gi|419823202|ref|ZP_14346762.1| ClpC protein [Bacillus atrophaeus C89]
gi|310871250|gb|ADP34725.1| ClpC [Bacillus atrophaeus 1942]
gi|388472733|gb|EIM09496.1| ClpC protein [Bacillus atrophaeus C89]
Length = 812
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 270/612 (44%), Positives = 373/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ +G+ S + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI------------GRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G S G +S SG
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG---------SNETG---SSASGT 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 155 NSNANTP------TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS +++V+IL GLR++YEAHH T EAI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIQVDQPSVDESVQILRGLRDRYEAHHRVSITDEAIEAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + F + PP+ E + + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + VE + + + E + V +DIA V S W+G+PV +I
Sbjct: 433 SQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMVVSSWTGVPVSKIA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETDKLLNMENLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFVFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESIFG 564
>gi|258651101|ref|YP_003200257.1| ATPase AAA-2 domain-containing protein [Nakamurella multipartita
DSM 44233]
gi|258554326|gb|ACV77268.1| ATPase AAA-2 domain protein [Nakamurella multipartita DSM 44233]
Length = 846
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/617 (41%), Positives = 375/617 (60%), Gaps = 58/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ S + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 AQVEEII------------GQGQQ-SPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A+G R
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG---YQGKETAAAEGGRSEG---- 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 161 -----TP--STSLVLDQFGRNLTQSAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA I++ +VP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIIRGDVPQTLKDKHLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+I+FIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIIMFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + IL GLR++YEAHH T +A+ +A L+ RYIS
Sbjct: 329 VEKDAALERRFQPIQVGEPTVAHTIEILKGLRDRYEAHHRITITDDALVSAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DRYLPDKAIDL+DEAG+R I ++ PPD D+ +++ V+ E
Sbjct: 389 DRYLPDKAIDLIDEAGARMRIRR-----------MTAPPDLRDFDEKLAGVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVV--ESSLPSASDDDEPAVVGPDD---IAAVASLWSGIPV 609
S + D A++ DT + ++ +S A D + V+ D IA V + W+GIPV
Sbjct: 434 SAIDAQDFEKAAALRDTEKQLLARKSEREKAWKDGDLDVISEVDDEQIAEVLANWTGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +EE+L KR+IGQD+AV A+S+A++R+R GLKDP RP+ + +F GP+G
Sbjct: 494 FKLTEEETTRLLKMEEELHKRIIGQDQAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL K+LA FG
Sbjct: 554 VGKTELTKALAEFLFGD 570
>gi|306836895|ref|ZP_07469849.1| ATP-dependent Clp protease ATP-binding subunit ClpC
[Corynebacterium accolens ATCC 49726]
gi|304567200|gb|EFM42811.1| ATP-dependent Clp protease ATP-binding subunit ClpC
[Corynebacterium accolens ATCC 49726]
Length = 958
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/621 (41%), Positives = 367/621 (59%), Gaps = 43/621 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEDVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I + T +PF+ K+V E ++ G+ +I E
Sbjct: 61 REVEEIIGQGSQPHT-------------GHIPFTPRAKKVLELSLREGLQMGHKYIGTEF 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL---------AKEGREPSLAKG 249
+ LGL DG A +VL +LG D+ + + L G + + P A
Sbjct: 108 LLLGLIREGDGVAAQVLTKLGADLPRVRQQVIQLLSGYEGGQQEGGGDSNQAPGPIGAGA 167
Query: 250 VRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRR 309
G+ + S R+ + L+QF +LT A + +DPV+GRE+E++RI+Q+L RR
Sbjct: 168 GSGAGAGGRGGSGGSGERSNSLVLDQFGRNLTQAAKDGKLDPVVGRESEVERIMQVLSRR 227
Query: 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEA 369
TKNNP+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E
Sbjct: 228 TKNNPVLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEE 287
Query: 370 RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429
R+ ++ EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +
Sbjct: 288 RLKKVLKEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGA 342
Query: 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489
TT DE+R EKD AL RRFQPV + EPS +D IL GLR+KYEAHH +T EA++AA
Sbjct: 343 TTLDEYRKHIEKDAALERRFQPVQVDEPSLDDTFLILKGLRDKYEAHHRVSYTDEALHAA 402
Query: 490 VHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQA 549
L+ RYI+DR+LPDKA+DL+DEAG+R I+ K + DD E+R +
Sbjct: 403 AQLADRYINDRFLPDKAVDLLDEAGARMRIKRMTAPKGLREV------DDRIAEVRREKE 456
Query: 550 MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWS 605
Q ++ + D ++ E S + D +E A VG D IA V + W+
Sbjct: 457 AAIDAQ----DFEKAASLRDDERKLGEERSEKEKQWRSGDLEEIAEVGEDQIAEVLAHWT 512
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV ++T E L+ +EE+L KR+IGQDEAV ++SRA++R+R GLKDP RP+ + +F
Sbjct: 513 GIPVLKLTEKESSRLLNMEEELHKRIIGQDEAVKSVSRAIRRTRAGLKDPRRPSGSFIFA 572
Query: 666 GPTGVGKTELAKSLAACYFGS 686
GP+GVGKTEL+KSLA FGS
Sbjct: 573 GPSGVGKTELSKSLANFLFGS 593
>gi|443635019|ref|ZP_21119190.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443345210|gb|ELS59276.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 810
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 268/612 (43%), Positives = 368/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ +G+ S + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI------------GRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G N
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS----------------NETGSS 150
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S T L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 151 AAGTNSNANT--PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH T +AI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + F + PP+ E + + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + VE + S + E + V DDIA V S W+G+PV +I
Sbjct: 433 SQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESIFG 564
>gi|384173746|ref|YP_005555131.1| Negative regulator of genetic competence ClpC/MecB [Bacillus
subtilis subsp. subtilis str. RO-NN-1]
gi|386756665|ref|YP_006229881.1| ATPase AAA-2 domain-containing protein [Bacillus sp. JS]
gi|428277501|ref|YP_005559236.1| class III stress response-related ATPase [Bacillus subtilis subsp.
natto BEST195]
gi|430755612|ref|YP_007211173.1| ATP-dependent Clp protease ClpC [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|449092799|ref|YP_007425290.1| class III stress response-related ATPase, AAA+ superfamily
[Bacillus subtilis XF-1]
gi|291482458|dbj|BAI83533.1| class III stress response-related ATPase [Bacillus subtilis subsp.
natto BEST195]
gi|349592970|gb|AEP89157.1| Negative regulator of genetic competence ClpC/MecB [Bacillus
subtilis subsp. subtilis str. RO-NN-1]
gi|384929947|gb|AFI26625.1| ATPase AAA-2 domain-containing protein [Bacillus sp. JS]
gi|430020132|gb|AGA20738.1| ATP-dependent Clp protease ClpC [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|449026714|gb|AGE61953.1| class III stress response-related ATPase, AAA+ superfamily
[Bacillus subtilis XF-1]
Length = 810
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 268/612 (43%), Positives = 368/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ +G+ S + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI------------GRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G N
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS----------------NETGSS 150
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S T L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 151 AAGTNSNANT--PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH T +AI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + F + PP+ E + + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + VE + S + E + V DDIA V S W+G+PV +I
Sbjct: 433 SQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESIFG 564
>gi|389862461|ref|YP_006364701.1| ATP-dependent Clp protease ATP-binding subunit [Modestobacter
marinus]
gi|388484664|emb|CCH86202.1| ATP-dependent Clp protease ATP-binding subunit [Modestobacter
marinus]
Length = 847
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/620 (41%), Positives = 373/620 (60%), Gaps = 67/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQAPSG-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPAAAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A + +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARDGKLDPVIGRAKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAAVEGLAQAIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ +SEP+ + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVSEPTLAHTIEILKGLRDRYEAHHRISITDNALVAAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I KR ++ PPD ++ + + G R
Sbjct: 388 DRFLPDKAIDLIDEAGARMRI---KR--------MTAPPD--------LREFDDRISGIR 428
Query: 559 LKYDDVV--------ASMGDTS-EIVVESS----LPSASDDDEPAVVGPDDIAAVASLWS 605
+ + + AS+ D +++ E S A D D A V + IA V + W+
Sbjct: 429 REKESAIDAQDFEKAASLRDKEKQLLGEKSEREKQWKAGDMDVVAEVDDEQIAEVLANWT 488
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV ++T +E L+ +E++L KR+IGQ+EA+ ++S+A++R+R GLKDP RP + +F
Sbjct: 489 GIPVFKLTEEETTRLLRMEDELHKRIIGQEEAIKSVSQAIRRTRAGLKDPRRPGGSFIFA 548
Query: 666 GPTGVGKTELAKSLAACYFG 685
GP+GVGKTELAK+LA FG
Sbjct: 549 GPSGVGKTELAKALAQFLFG 568
>gi|325288483|ref|YP_004264664.1| ATPase AAA [Syntrophobotulus glycolicus DSM 8271]
gi|324963884|gb|ADY54663.1| ATPase AAA-2 domain protein [Syntrophobotulus glycolicus DSM 8271]
Length = 841
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 252/611 (41%), Positives = 362/611 (59%), Gaps = 52/611 (8%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAREAV 141
RFT++A + + ++ AK +G + T+H+LL L+ E E G+ +K +
Sbjct: 4 RFTQKAEQVFLLAESTAKRMGHKTIGTEHILLALLEEGEGVAATALKEMGLDEEKMSGKI 63
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ + G A ++ S KRV E A E ++ +G N++ EH+ L
Sbjct: 64 IQLI--------------GISEPIAGEVGLSPRVKRVIEIATEEAQRQGVNYVGTEHVLL 109
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
G+ +G A RVL L V+ L V+ L GE A+ P + G+ GK +
Sbjct: 110 GILIEGEGIAARVLADLKVNPEKLWEHVVALLGGE-AENTSVPGSSPGM----TGGKNVS 164
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
+P AL +F DLT A E+ +DPVIGRE EI+R+IQ+L RRTKNNP+L+GE G
Sbjct: 165 SNTP------ALNEFGRDLTVMAQEKKLDPVIGREKEIERVIQVLSRRTKNNPVLIGEPG 218
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA RIV VP L KR+++LD+ ++AG K RGE E R+ ++ EI+ +
Sbjct: 219 VGKTAIAEGLAQRIVSGGVPEILADKRVVTLDLSSMVAGTKYRGEFEERMKKVMEEIRFA 278
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G++I+FIDE+HTLIG+G +D +N+LKP+L RGE+QC+ +TT DE+R E+
Sbjct: 279 GNIIIFIDELHTLIGAGAA-----EGAIDAANILKPALARGEMQCVGATTLDEYRKYIER 333
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQP+ I EP+ E+A+ IL GLR++YEAHH K T EAI AAV LS RYISDR+
Sbjct: 334 DSALERRFQPIKIGEPTVEEAIEILKGLRDRYEAHHRVKITDEAIEAAVRLSDRYISDRF 393
Query: 502 LPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
LPDKAIDL+DEA S+ + EL + + E + K QE + +
Sbjct: 394 LPDKAIDLMDEAASKVRLSSYTAPGELKELETEVEALKKEKEAAVKRQEFEQAAKIRDQE 453
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITA 614
Q R + ++++ E E +L +++ +DI + S W+GIPV ++
Sbjct: 454 QQKR----EQLSTLRKDWEANREKNL---------SILNQEDIGKIVSSWTGIPVNKLEE 500
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
+E L+ LEE L +RV+GQ+EAV+A++R+V+R+R GLKDP RP + +F GPTGVGKTE
Sbjct: 501 EESARLLKLEEVLHERVVGQEEAVSAVARSVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 560
Query: 675 LAKSLAACYFG 685
LA++LA FG
Sbjct: 561 LARALAEALFG 571
>gi|359459996|ref|ZP_09248559.1| ATPase AAA [Acaryochloris sp. CCMEE 5410]
Length = 822
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/619 (42%), Positives = 367/619 (59%), Gaps = 61/619 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL--ESGITIDKAR 138
+FE FTE+A+KA+ +Q+EA L + V T+ +LLG+IAE + SG + + R
Sbjct: 1 MFECFTEKAIKAITLAQQEATHLKQKCVGTELILLGIIAEGTGIAAKILKSSGANLKEVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V + S + S+ ++PF+ +KRV + A+E SR G+N+++ EH
Sbjct: 61 IEVKKLGISGTS-------------SANIEIPFTPRSKRVLDIALEESRQLGHNYVSTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL + A ++L LG+D+ + + R+ G+R+ I K
Sbjct: 108 LLLGLIQDEQSVAAQILVNLGIDIIDIRTQVMQMFSESTVAPSRD-----GLRDRGI--K 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T KS LE+ +LT A +DPV+GR+ E+QR+IQIL RRTKNNPIL+G
Sbjct: 161 TLQKKS-------ILEEVGTNLTQLARAGNLDPVVGRQNEVQRMIQILSRRTKNNPILIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA ++ +VP L KR+++L++G L+AG K RGE E R+ ++ EI
Sbjct: 214 EPGVGKTALAEGLAQLVINHDVPEALDGKRVLTLNVGSLLAGTKYRGEFEGRLKAIVEEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+IL IDE+HTL+GSG GLD +N+LKPSL RGELQCI +TT ++R
Sbjct: 274 RSGGDIILVIDEIHTLVGSGAA-----EGGLDAANILKPSLARGELQCIGATTLADYRQY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQPV+++E S E+ ++IL G+R YE HH + + A+ AA LS RYI
Sbjct: 329 IERDPALERRFQPVMVNESSVEETIQILQGVRSCYEQHHQLEISDLALEAAAKLSDRYIC 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYW---QEIRTV-QAMHEVV 554
DR+LPDKAIDL+DEAGSR I SKP + +E+R + Q E
Sbjct: 389 DRFLPDKAIDLIDEAGSRVRIS------------HSKPASAHKALNKELRQILQGKKEAT 436
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSA-------SDDDEPAVVGPDDIAAVASLWSGI 607
Q K D +A E+ ++ + A S D V +DIA + + WSG+
Sbjct: 437 Q----KQDYSLAGELHIREVEIQKKIQGANQKGSSNSTDAIVPTVNEEDIAHIVASWSGV 492
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
P+ ++T E L+ LE+ L +RVIGQ++AV A+SRA++R R GLKDPNRP A+ +F GP
Sbjct: 493 PLHKLTESESENLLELEDILHQRVIGQEKAVKAVSRAIRRVRTGLKDPNRPIASFVFSGP 552
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGKTELAK LA+ YFGS
Sbjct: 553 TGVGKTELAKVLASSYFGS 571
>gi|331699829|ref|YP_004336068.1| ATPase [Pseudonocardia dioxanivorans CB1190]
gi|326954518|gb|AEA28215.1| ATPase AAA-2 domain protein [Pseudonocardia dioxanivorans CB1190]
Length = 847
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/620 (41%), Positives = 368/620 (59%), Gaps = 66/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE E S +G S S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSGYQGKEPAEASAGRGEGTPSSS-- 165
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L+QF +LT +A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 166 ------------LVLDQFGRNLTQQAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQGIVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 329 VEKDPALERRFQPIQVGEPSVTHTIEILKGLRDRYEAHHRVTITDPALVAAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD ++ E + G R
Sbjct: 389 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPD--------LREFDEKIAGVR 429
Query: 559 LKYDDVV--------ASMGDTSEIVV-----ESSLPSASDDDEPAVVGPDDIAAVASLWS 605
+ + AS+ DT + ++ + D D A V + IA V + W+
Sbjct: 430 RDKESAIDAQDFERAASLRDTEKQLLGQKSEREKQWKSGDLDVVAEVDDEQIAEVLANWT 489
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV ++T +E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F
Sbjct: 490 GIPVFKLTEEETTRLLRMEDELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFA 549
Query: 666 GPTGVGKTELAKSLAACYFG 685
GP+GVGKTEL+K+LA FG
Sbjct: 550 GPSGVGKTELSKALANFLFG 569
>gi|227502079|ref|ZP_03932128.1| ATPase with chaperone activity, ATP-binding subunit, partial
[Corynebacterium accolens ATCC 49725]
gi|227077234|gb|EEI15197.1| ATPase with chaperone activity, ATP-binding subunit
[Corynebacterium accolens ATCC 49725]
Length = 953
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 258/621 (41%), Positives = 368/621 (59%), Gaps = 43/621 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEDVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I + T +PF+ K+V E ++ G+ +I E
Sbjct: 61 REVEEIIGQGSQPHT-------------GHIPFTPRAKKVLELSLREGLQMGHKYIGTEF 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL---------AKEGREPSLAKG 249
+ LGL DG A +VL +LG D+ + + L G + + P A
Sbjct: 108 LLLGLIREGDGVAAQVLTKLGADLPRVRQQVIQLLSGYEGGQQEGGGDSNQAPGPIGAGA 167
Query: 250 VRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRR 309
G+ + S R+ + L+QF +LT A + +DPV+GRE+E++RI+Q+L RR
Sbjct: 168 GSGAGAGGRGGSGGSGERSNSLVLDQFGRNLTQAAKDGKLDPVVGRESEVERIMQVLSRR 227
Query: 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEA 369
TKNNP+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E
Sbjct: 228 TKNNPVLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEE 287
Query: 370 RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429
R+ ++ EI + GD+ILFIDE+HTL+G+G +G +D ++LLKP L RGELQ I +
Sbjct: 288 RLKKVLKEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASLLKPKLARGELQTIGA 342
Query: 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489
TT DE+R EKD AL RRFQPV + EPS +D IL GLR+KYEAHH +T EA++AA
Sbjct: 343 TTLDEYRKHIEKDAALERRFQPVQVDEPSLDDTFLILKGLRDKYEAHHRVSYTDEALHAA 402
Query: 490 VHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQA 549
L+ RYI+DR+LPDKA+DL+DEAG+R I+ K + DD E+R +
Sbjct: 403 AQLADRYINDRFLPDKAVDLLDEAGARMRIKRMTAPKGLREV------DDRIAEVRREKE 456
Query: 550 MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWS 605
Q ++ D ++ E S + D +E A VG D IA V + W+
Sbjct: 457 AAIDAQ----DFEKAAGLRDDERKLGEERSEKEKQWRSGDLEEIAEVGEDQIAEVLAHWT 512
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV ++T E L+ +EE+L KR+IGQDEAV ++SRA++R+R GLKDP RP+ + +F
Sbjct: 513 GIPVLKLTEKESSRLLNMEEELHKRIIGQDEAVKSVSRAIRRTRAGLKDPRRPSGSFIFA 572
Query: 666 GPTGVGKTELAKSLAACYFGS 686
GP+GVGKTEL+KSLA FGS
Sbjct: 573 GPSGVGKTELSKSLANFLFGS 593
>gi|111226012|ref|YP_716806.1| ATP-dependent protease [Frankia alni ACN14a]
gi|111153544|emb|CAJ65303.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
with DnaK, DnaJ, and GrpE [Frankia alni ACN14a]
Length = 834
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/624 (41%), Positives = 369/624 (59%), Gaps = 72/624 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G K G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGK-----------------GE 150
Query: 259 TAALKSPGRTRASA---LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
TA +P S L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+
Sbjct: 151 TATSGAPAEGTPSTSLVLDQFGRNLTAAARESKLDPVIGREKEIERVMQVLSRRTKNNPV 210
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++
Sbjct: 211 LIGEPGVGKTAVVEGLAQAIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVL 270
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+
Sbjct: 271 KEIRTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEY 325
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ R
Sbjct: 326 RKHLEKDAALERRFQPIQVAEPSVAHTIEILKGLRDRYEAHHRVSITDAALVAAASLADR 385
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YISDR+LPDKAIDL+DEAGSR I ++ PPD ++ E +
Sbjct: 386 YISDRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPD--------LREFDERIA 426
Query: 556 GSRLKYDDVV--------ASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVAS 602
G R + + AS+ D + ++ A D D A VG ++IA V +
Sbjct: 427 GVRRDKESAIDAQDFEKAASLRDKEKTLLSEKAKREKEWKAGDMDVVAEVGDEEIAEVLA 486
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
+W+GIPV ++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP +
Sbjct: 487 IWTGIPVFKLTEEETARLLRMEDELHKRVIGQQQAIKAVSQAIRRTRAGLKDPKRPGGSF 546
Query: 663 LFCGPTGVGKTELAKSLAACYFGS 686
+F GP+GVGKTEL+K+LA FG
Sbjct: 547 IFAGPSGVGKTELSKTLAEFLFGD 570
>gi|359421709|ref|ZP_09213621.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia araii
NBRC 100433]
gi|358242425|dbj|GAB11690.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia araii
NBRC 100433]
Length = 848
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 258/612 (42%), Positives = 370/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + A +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 TQVEEII------------GQGQQ-APAGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNKVRQQVIQLLSG---YQGKEP------QEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 STEAGTP--STSLVLDQFGRNLTAAAGEGKLDPVIGRENEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGDVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYEAHHRVSITDGALAAAASLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDRIAEARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVAQRAEREKQWRSGDMDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|117927429|ref|YP_871980.1| ATPase [Acidothermus cellulolyticus 11B]
gi|117647892|gb|ABK51994.1| ATPase AAA-2 domain protein [Acidothermus cellulolyticus 11B]
Length = 839
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/617 (41%), Positives = 373/617 (60%), Gaps = 59/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+ + A G E +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKAEATAGGPAEGT---- 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ + L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 161 --------QSTSLVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLVG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAI EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAIVEGLAQAIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIVLFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YE+HH T A+ AA L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVNEPSLAHTIEILKGLRDRYESHHKVTITDGALVAAAQLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRLRIRR-----------MTAPPDLREFDEKIAAVRREKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D A++ D + ++ + A D D A V D IA V S +GIPV
Sbjct: 433 SAIDAQDFEKAAALRDKEKQLLAAKAQREREWKAGDMDVVAEVDEDLIAEVLSAATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +EE+L KRVIGQDEA+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEETARLLRMEEELHKRVIGQDEAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFGD 569
>gi|453073740|ref|ZP_21976539.1| DNA binding ATP-dependent peptidase [Rhodococcus triatomae BKS
15-14]
gi|452765766|gb|EME24020.1| DNA binding ATP-dependent peptidase [Rhodococcus triatomae BKS
15-14]
Length = 849
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 255/612 (41%), Positives = 365/612 (59%), Gaps = 48/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPAEGAGTSRGEAGTP 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +L L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 165 STSL---------VLDQFGRNLTQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIG 215
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 216 EPGVGKTAVVEGLAQAIVNGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 275
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 276 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 330
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 331 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYIN 390
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 391 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDKIADARREKESAID 439
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 440 AQDFEKAASLRDKEKQLVAQRAEREKQWRSGDLDVIAEVDDEQIAEVLGNWTGIPVFKLT 499
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 500 EEETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 559
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 560 ELSKALANFLFG 571
>gi|422528562|ref|ZP_16604544.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL053PA1]
gi|314974734|gb|EFT18829.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL053PA1]
Length = 844
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 253/614 (41%), Positives = 370/614 (60%), Gaps = 52/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK+L + + T+HLLLGLI+E LES I+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I H T+ + +PF+ K+V E ++ + +++I E
Sbjct: 61 AQVEEIIGHGTS--------------TPTGHIPFTPRAKKVLELSLREALQMNHSYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A +VL RLG D+N + + LQG E R+ + SG
Sbjct: 107 HILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLLQGYQGDE----------RQAATSG 156
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A P ++ A+ L+QF +LT A + +DPVIGRE EI+R++ +L RRTKNNP+L+
Sbjct: 157 APEA--GPQQSSATILDQFGRNLTEAARDGELDPVIGREREIERVMVVLSRRTKNNPVLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGK+A EGLA IV+ +VP L K+I SLD+G ++AG++ RG+ E R+ ++ E
Sbjct: 215 GEPGVGKSACVEGLAQAIVRGDVPETLRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 IKNRGDIILFIDEIHTLVGAGAA-----EGAIDAASMLKPMLARGELQTIGATTLDEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T EAI +A +L++RYI
Sbjct: 330 YIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAG+R +I ++ PPD ++ + I V+ E
Sbjct: 390 QDRFLPDKAIDLIDEAGARMNIRR-----------MTAPPDLREFDERIARVRVEKEAAI 438
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
++ ++ D +++ E D+ PAVVGPD+IA V S +GIPV +
Sbjct: 439 DAQ-DFERAAGLRDDEKKLLAEREAKEEEWKQGDESVPAVVGPDEIAEVLSGATGIPVFK 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E+++ KR +GQ++AV A+ R+++R+R GLK P RP + +F GP+GVG
Sbjct: 498 LTEEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKAPKRPAGSFIFAGPSGVG 557
Query: 672 KTELAKSLAACYFG 685
KTEL K+L FG
Sbjct: 558 KTELTKALTEFLFG 571
>gi|253681670|ref|ZP_04862467.1| negative regulator of genetic competence ClpC/MecB [Clostridium
botulinum D str. 1873]
gi|253561382|gb|EES90834.1| negative regulator of genetic competence ClpC/MecB [Clostridium
botulinum D str. 1873]
Length = 813
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/623 (42%), Positives = 368/623 (59%), Gaps = 72/623 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + ++Q A++ V T+H+LLG++ ED GI+ E
Sbjct: 2 MFGRFTERAQKVLYYAQEAAQNFKHGYVGTEHILLGILKED--------EGISKKLLNE- 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+++ ++ ++ G + ++P + TKR+ E ++ SR +N+I PEHI
Sbjct: 53 -MNVNEENVSKLIEEYEGTGDINLNKNEIPLTPRTKRLLELSLLESRKNNHNYITPEHIL 111
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVREN---SISG 257
L + +G A +L L ++ RL+ EL K+ S+ K EN +IS
Sbjct: 112 LAMIKETEGVAYAILNNLNINF--------ERLEKELLKDSN-LSIGKTASENMEKNISH 162
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
T L GR DLT A + +DPVIGR++E +R++++LCRR KNNP L+
Sbjct: 163 NTPTLDKYGR-----------DLTNMAIDGKLDPVIGRDSETERVLEVLCRRIKNNPCLI 211
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
G+ GVGKTAIAEGLA RIV +P L +KR+++LD+ ++AG+K RGE E RV ++ E
Sbjct: 212 GDPGVGKTAIAEGLAQRIVSGNIPEILKNKRVVTLDISSMVAGSKYRGEFEDRVKKVMDE 271
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I K G+VILFIDE+HT++G+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 272 IYKDGNVILFIDEIHTIVGAG----GAEG-AIDASNILKPALARGELQCIGATTIDEYRK 326
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EP++E++++IL GLR+KYEAHH K T EAI AAV LS RYI
Sbjct: 327 YIEKDSALERRFQPVNVGEPTKEESIQILKGLRDKYEAHHGVKITDEAIEAAVELSDRYI 386
Query: 498 SDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYWQE 543
+DRYLPDKAIDL+DEAG++ I EL K KE++ I
Sbjct: 387 TDRYLPDKAIDLIDEAGAKVRIKNLTVPPDLKGLEEELEKVGKEKEDAI----------- 435
Query: 544 IRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
TVQ + + + G +S + + +V + IA V S
Sbjct: 436 --TVQDFEKAASLRDKEKELKDKLKGFKDNWKKKSQVST-------QIVSKEQIAQVVST 486
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
WS +P++++T E L+ LEE L KRVIGQ+EAV +IS+AV+R+RVGLKDP RP + +
Sbjct: 487 WSNVPIEKLTEKEADRLLKLEEILHKRVIGQNEAVKSISKAVRRARVGLKDPKRPIGSFI 546
Query: 664 FCGPTGVGKTELAKSLAACYFGS 686
F GPTGVGKTEL+K+LA FG
Sbjct: 547 FLGPTGVGKTELSKALAEAMFGD 569
>gi|86743058|ref|YP_483458.1| ATPase [Frankia sp. CcI3]
gi|86569920|gb|ABD13729.1| ATPase AAA-2 [Frankia sp. CcI3]
Length = 834
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 261/620 (42%), Positives = 370/620 (59%), Gaps = 64/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQAPSG-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G K G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGK-----------------GE 150
Query: 259 TAALKSPGRTRASA---LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
TA +P S L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+
Sbjct: 151 TATSGAPAEGTPSTSLVLDQFGRNLTAAARESKLDPVIGREKEIERVMQVLSRRTKNNPV 210
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA I++ EVP L K++ +LD+G L+AG++ RG+ E R+ ++
Sbjct: 211 LIGEPGVGKTAVVEGLAQAIIKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVL 270
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+
Sbjct: 271 KEIRTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEY 325
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ R
Sbjct: 326 RKHLEKDAALERRFQPIQVAEPSVAHTIEILKGLRDRYEAHHRVSITDAALVAAASLADR 385
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEV 553
YISDR+LPDKAIDL+DEAGSR I ++ PPD ++ + I V+ E
Sbjct: 386 YISDRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDERIAAVRRDKE- 433
Query: 554 VQGSRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSG 606
S + D AS+ D + ++ A D D A VG ++IA V ++W+G
Sbjct: 434 ---SAIDAQDFEKAASLRDKEKTLLSEKAKREKEWKAGDMDVVAEVGDEEIAEVLAIWTG 490
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F G
Sbjct: 491 IPVFKLTEEETARLLRMEDELHKRVIGQQQAIKAVSQAIRRTRAGLKDPKRPGGSFIFAG 550
Query: 667 PTGVGKTELAKSLAACYFGS 686
P+GVGKTEL+K+LA FG
Sbjct: 551 PSGVGKTELSKTLAEFLFGD 570
>gi|422504031|ref|ZP_16580268.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL027PA2]
gi|315082738|gb|EFT54714.1| negative regulator of genetic competence ClpC/MecB
[Propionibacterium acnes HL027PA2]
Length = 844
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 253/614 (41%), Positives = 370/614 (60%), Gaps = 52/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK+L + + T+HLLLGLI+E LES I+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I H T+ + +PF+ K+V E ++ + +++I E
Sbjct: 61 AQVEEIIGHGTS--------------TPTGHIPFTPRAKKVLELSLREALQMNHSYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A +VL RLG D+N + + LQG E R+ + SG
Sbjct: 107 HILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLLQGYQGDE----------RQAATSG 156
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A P ++ A+ L+QF +LT A + +DPVIGRE EI+R++ +L RRTKNNP+L+
Sbjct: 157 APEA--GPQQSSATILDQFGRNLTEAARDGELDPVIGREREIERVMVVLSRRTKNNPVLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGK+A EGLA IV+ +VP L K+I SLD+G ++AG++ RG+ E R+ ++ E
Sbjct: 215 GEPGVGKSACVEGLAQAIVRGDVPETLRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT E+R
Sbjct: 275 IKNRGDIILFIDEIHTLVGAGAA-----EGAIDAASMLKPMLARGELQTIGATTLGEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T EAI +A +L++RYI
Sbjct: 330 YIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
DR+LPDKAIDL+DEAG+R +I ++ PPD ++ + I V+ E
Sbjct: 390 QDRFLPDKAIDLIDEAGARMNIRR-----------MTAPPDLREFDERIARVRVEKEAAI 438
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
++ ++ D +++ E D+ PAVVGPD+IA V S +GIPV +
Sbjct: 439 DAQ-DFERAAGLRDDEKKLLAEREAKEEEWKQGDESVPAVVGPDEIAEVLSGATGIPVFK 497
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E+++ KR +GQ++AV A+ R+++R+R GLKDP RP + +F GP+GVG
Sbjct: 498 LTEEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVG 557
Query: 672 KTELAKSLAACYFG 685
KTEL K+L FG
Sbjct: 558 KTELTKALTEFLFG 571
>gi|255326112|ref|ZP_05367199.1| negative regulator of genetic competence ClpC/mecB [Rothia
mucilaginosa ATCC 25296]
gi|255296823|gb|EET76153.1| negative regulator of genetic competence ClpC/mecB [Rothia
mucilaginosa ATCC 25296]
Length = 851
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/619 (41%), Positives = 368/619 (59%), Gaps = 59/619 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI E LES G+T++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHLLLGLIHEGEGIGARALESLGVTLNAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I P + +PF+ K+V E ++ + + +I EH
Sbjct: 61 EQVQDIVGPG-------------PQAPNGHIPFTPRAKKVLELSMREAIQLNHGYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LG+ ++G A +VL +LG + + + + G + A NS G
Sbjct: 108 ILLGMVRANEGVANQVLVKLGAEPAAVRQAVMDLISGYPGNNSGDKETAGVGAGNSREGT 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A ++ L+QF +LTA A E +DPVIGR E++R++Q+L RRTKNNP+L+G
Sbjct: 168 PAG--------STILDQFGRNLTAAAREGELDPVIGRHKEMERVMQVLSRRTKNNPVLIG 219
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 220 EPGVGKTAVVEGLAQAIVHGDVPETLKDKHLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 279
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 280 RSRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKH 334
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPSQE AV+IL G+R+KYEAHH T EAI AV+L+ARYIS
Sbjct: 335 IEKDAALERRFQPIQVEEPSQELAVQILKGVRDKYEAHHRVTITDEAIETAVNLAARYIS 394
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKA+DL+DEAG+R I KR ++ PP+ ++ + E R
Sbjct: 395 DRFLPDKAVDLIDEAGARLRI---KR--------MTAPPE--------IKLLDEKAAKLR 435
Query: 559 LKYDDVV--------ASMGDTSEIVV----ESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
+ +D + A + D + V+ E+ D V P+ I+ V + +G
Sbjct: 436 QQKEDAINSQDYEKAAGLRDQEQKVLAEKEEAEKAWREGGDAFGTVTPEVISEVLAASTG 495
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
+PV +IT +E L+ +E++L KRVIGQ+ A+AA+SRA++R+R GLKDP RP + +F G
Sbjct: 496 VPVYKITEEESSRLLTMEQELHKRVIGQEHAIAALSRAIRRTRAGLKDPRRPGGSFIFAG 555
Query: 667 PTGVGKTELAKSLAACYFG 685
PTGVGKTELAK+LA FG
Sbjct: 556 PTGVGKTELAKALAEFLFG 574
>gi|72163275|ref|YP_290932.1| ATPase [Thermobifida fusca YX]
gi|71917007|gb|AAZ56909.1| ATPase [Thermobifida fusca YX]
Length = 830
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/614 (41%), Positives = 371/614 (60%), Gaps = 53/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQAPSG-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP A
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLHG---YQGKEPQAAG---------- 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
TAA +P + + L+QF +LT A E +DPVIGR+ EI+R++Q+L RRTKNNP+L+G
Sbjct: 155 TAAESAP--STSLVLDQFGRNLTQAAREGKLDPVIGRDKEIERVMQVLSRRTKNNPVLVG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTA+ EGLA +IV+ E+P L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 DPGVGKTAVVEGLAQKIVKGEIPETLKDKQLYTLDLGALVAGSRYRGDFEERLRKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RSRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVEEPTISHTIEILKGLRDRYEAHHRVSITDGALVAAAQLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DRYLPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRYLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAKVRRDKEAAID 436
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
++ ++ A + + + + A D D A V + IA V + +GIPV ++
Sbjct: 437 AQ-DFERAAALRDEEKRLQAQRAQKEKEWKAGDMDTVAEVNEELIAEVLATATGIPVFRL 495
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T +E L+ +EE+L KRVIGQD+A+ A+S+A++R+R GLKDP RP + +F GP+GVGK
Sbjct: 496 TEEESSRLLRMEEELHKRVIGQDDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGK 555
Query: 673 TELAKSLAACYFGS 686
TEL K+LA FG
Sbjct: 556 TELCKALAEFLFGD 569
>gi|289579183|ref|YP_003477810.1| ATPase AAA [Thermoanaerobacter italicus Ab9]
gi|289528896|gb|ADD03248.1| ATPase AAA-2 domain protein [Thermoanaerobacter italicus Ab9]
Length = 816
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/615 (42%), Positives = 365/615 (59%), Gaps = 57/615 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKA 137
++F RFTERA KA+ +Q EA+S + V T+H+LLGL+ E+ + G+T +
Sbjct: 2 AMFGRFTERAQKALYLAQEEARSFYHNYVGTEHILLGLLKENEGIAARTLKKLGVTYETT 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
RE V+S+ N P P KRV E ++ +R ++I E
Sbjct: 62 REKVLSLIGMGNI-----------PGDVVGYTP---RAKRVLELSLSEARRFNTSYIGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LG+ +G A R+L G+D N + V L EPS G
Sbjct: 108 HILLGILREGEGVAVRILMEQGIDFNRVREEIVKMLN-------EEPS-----------G 149
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A T L QF DLT A + +DPVIGRE EI+R+IQIL RRTKNNP+L+
Sbjct: 150 GPAKATKVKNTNTPTLNQFGRDLTELARDGKLDPVIGREKEIERVIQILSRRTKNNPVLI 209
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI EGLA +IV+ E+P L KR+++LDM ++AG K RGE E R+ T+++E
Sbjct: 210 GEPGVGKTAIVEGLAQKIVEGEIPEILKDKRVVTLDMASMVAGTKYRGEFEDRLKTVLNE 269
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+ K+G+VILFIDE+HTLIG+G +D SN+LKP+L RGE+Q + +TT +E+R
Sbjct: 270 VIKAGNVILFIDEMHTLIGAGAA-----EGAIDASNILKPALARGEIQVVGATTLEEYRK 324
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQP+++ EP+ E+ + IL GLR+KYEAHH K T EA+ AA LS RYI
Sbjct: 325 YVERDPALERRFQPIIVDEPTVEETIEILKGLRDKYEAHHRVKITDEALEAAARLSHRYI 384
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDL+DEA SR ++ ++ PP+ E + + E +
Sbjct: 385 ADRFLPDKAIDLIDEAASRVRLK-----------TVTAPPEIKELEDKINDLIKEKEEAI 433
Query: 558 RLKYDDVVASMGDTSEIVVE------SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + + A + D + + E + S +E + VGP++IA V SLW+GIPV++
Sbjct: 434 KTQEYEKAAKIRDEEQKLREELEKLKAKWQQNSLSNEKS-VGPEEIAQVVSLWTGIPVKK 492
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ +E L+ LEE L +RVIGQ+EAV A++RA++R+RVGLKDP RP + +F GPTGVG
Sbjct: 493 LAEEESERLLHLEEILHERVIGQNEAVEAVARAIRRARVGLKDPKRPIGSFIFLGPTGVG 552
Query: 672 KTELAKSLAACYFGS 686
KTEL K+LA FG
Sbjct: 553 KTELTKALAEALFGD 567
>gi|321313756|ref|YP_004206043.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus subtilis BSn5]
gi|320020030|gb|ADV95016.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus subtilis BSn5]
Length = 810
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 267/612 (43%), Positives = 368/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ +G+ S + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI------------GRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G N
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS----------------NETGSS 150
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A S T L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 151 AAGTNSNANT--PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAVAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH T +AI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + F + PP+ E + + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + VE + S + E + V DDIA V S W+G+PV +I
Sbjct: 433 SQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESIFG 564
>gi|398303898|ref|ZP_10507484.1| genetic competence negative regulator ClpC/MecB [Bacillus
vallismortis DV1-F-3]
Length = 810
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 268/612 (43%), Positives = 373/612 (60%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E G+ DK +
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V S+ +G+ S + ++ K+V E +++ +R G++++ EH
Sbjct: 62 KEVESLI------------GRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N A V +L G S G +S +G
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLG---------SNETG---SSATGT 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+G
Sbjct: 155 NSNANTP------TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 269 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH T +AI AAV LS RYIS
Sbjct: 324 IEKDAALERRFQPIQVDQPSADESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ + F + PP+ E + + E +
Sbjct: 384 DRFLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQ 432
Query: 559 LKYDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ DT + + VE + S + E + V DDIA V + W+G+PV +I
Sbjct: 433 SQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVASWTGVPVSKIA 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 QTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESIFG 564
>gi|339006576|ref|ZP_08639151.1| negative regulator of genetic competence ClpC/MecB [Brevibacillus
laterosporus LMG 15441]
gi|421875241|ref|ZP_16306835.1| negative regulator of genetic competence ClpC/MecB [Brevibacillus
laterosporus GI-9]
gi|338775785|gb|EGP35313.1| negative regulator of genetic competence ClpC/MecB [Brevibacillus
laterosporus LMG 15441]
gi|372455709|emb|CCF16384.1| negative regulator of genetic competence ClpC/MecB [Brevibacillus
laterosporus GI-9]
Length = 820
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/614 (42%), Positives = 365/614 (59%), Gaps = 51/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + + EA LG + T+H+LLGLI E G+ +DK +
Sbjct: 2 MFGRFTERAQKVLALALEEAVRLGHKDIGTEHVLLGLIREGEGIAAKALQALGLGLDKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMP-FSISTKRVFEAAVEYSRSRGYNFIAPE 197
V S+ Q P ++ P ++ K+V E +++ +R G+ ++ E
Sbjct: 62 NEVESLIGRAPEQ----------PANTTNYTPNYTPRAKKVIELSMDEARKLGHTYVGTE 111
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A R++ LG+ +N + L +PS G
Sbjct: 112 HILLGLIREGEGIAARIMNNLGISLNKARQQVLQLLGSSEMMSSHQPS-----------G 160
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A+ +P L+ DLTA A E +DPVIGR+ EI+R+IQ+L RRTKNNP+L+
Sbjct: 161 SNASANTP------TLDGLARDLTAIAKEGSLDPVIGRQKEIERVIQVLSRRTKNNPVLI 214
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA +IV E+P L KR+M+LDMG ++AG K RGE E R+ ++ E
Sbjct: 215 GEPGVGKTAIAEGLAQKIVNNEIPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKIMDE 274
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQC+ +TT DE+R
Sbjct: 275 IRQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCVGATTLDEYRK 329
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EP+ EDA++IL GLR++YEAHH K T EAIN AV +S RYI
Sbjct: 330 YIEKDAALERRFQPIQVDEPTPEDAIKILSGLRDRYEAHHRVKITDEAINQAVKMSDRYI 389
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDL+DEA S+ ++ F + PP+ E R + E
Sbjct: 390 TDRFLPDKAIDLIDEAASKVRLQSF-----------TVPPNLKELEARLEEVRKEKDAAV 438
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDE-----PAVVGPDDIAAVASLWSGIPVQQI 612
+ + + A++ D + + E + D E V +DIA V + W+GIPV ++
Sbjct: 439 QSQEFEEAAALRDKEQKLREELDSTKKDWKERQGKLNMEVTQEDIAHVVANWTGIPVLKL 498
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +E+ L RVIGQDEAV +++RAV+R+R GLKDP RP + +F GPTGVGK
Sbjct: 499 KEEETERLLKMEDILHDRVIGQDEAVKSVARAVRRARAGLKDPKRPIGSFIFLGPTGVGK 558
Query: 673 TELAKSLAACYFGS 686
TELA+++A FG
Sbjct: 559 TELARAVAETLFGD 572
>gi|159037791|ref|YP_001537044.1| ATPase [Salinispora arenicola CNS-205]
gi|157916626|gb|ABV98053.1| ATPase AAA-2 domain protein [Salinispora arenicola CNS-205]
Length = 836
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/620 (42%), Positives = 373/620 (60%), Gaps = 64/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPA------------- 151
Query: 259 TAALKSPGRTRASA---LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
AA +PG S L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+
Sbjct: 152 -AAGTAPGEAAPSTSLVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPV 210
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGL+ RIV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++
Sbjct: 211 LIGEPGVGKTAVVEGLSQRIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVL 270
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+
Sbjct: 271 KEIRTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEY 325
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EPS + IL GLR++YEAHH T A+ AA L+ R
Sbjct: 326 RKHLEKDAALERRFQPIQVGEPSLAHTIEILKGLRDRYEAHHRVSITDAALVAAATLADR 385
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEV 553
YISDR+LPDKAIDL+DEAG+R I ++ PPD D+ + I V+ E
Sbjct: 386 YISDRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLRDFDERIAQVRRDKE- 433
Query: 554 VQGSRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSG 606
S + D A + DT + ++ A D D V + IA V W+G
Sbjct: 434 ---SAIDAQDFERAAQLRDTEKQLLGQKAQREKEWKAGDLDVVTEVDDEQIAEVLGNWTG 490
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T +E L+ +E++L KRVIGQ++AV A+S+A++R+R GLKDP RP+ + +F G
Sbjct: 491 IPVYKLTEEETSRLLRMEDELHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAG 550
Query: 667 PTGVGKTELAKSLAACYFGS 686
P+GVGKTEL+K+LA FGS
Sbjct: 551 PSGVGKTELSKALAEFLFGS 570
>gi|397903987|ref|ZP_10504920.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB [Caloramator
australicus RC3]
gi|343178731|emb|CCC57819.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB [Caloramator
australicus RC3]
Length = 818
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/614 (42%), Positives = 371/614 (60%), Gaps = 51/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+F FTER+ + + + EAK L + + T+HLLLG+I E + L+ GI +K R
Sbjct: 1 MFNGFTERSQRVLQLAAEEAKRLNHNYIGTEHLLLGIIREGGQASKVLKDLGIDDEKIRN 60
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
++ I +G+ F + ++P + TKR+ E A +R+ +NF+APEH+
Sbjct: 61 LIIEI------------EGKGEEFFNFHEIPLTPRTKRIIELARNEARNLNHNFVAPEHM 108
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQ-GELAKEGREPSLAKGVRENSISGK 258
L L +G A +L +LG+D+ ++ L GEL + GK
Sbjct: 109 MLALLREGEGVAIAILAKLGIDIVKARNEILNSLNVGELGQ--------------GFKGK 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+T L+Q+ DLT A E +DPVIGRE E +R+I+IL RRTKNNP L+G
Sbjct: 155 PGPGTRHRQTNTPTLDQYGRDLTELAREGKLDPVIGRENETERVIEILSRRTKNNPCLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV+ VP L +KR+++LD+ ++AG+K RGE E R+ ++ EI
Sbjct: 215 EPGVGKTAIAEGLAQRIVEGNVPEILKNKRVVTLDLSGMVAGSKYRGEFEERIKRVMDEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTL+G+G +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 275 RRAGNIILFIDEIHTLVGAGAA-----EGAIDASNILKPALARGEIQVIGATTIDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E+++ IL GLR+KYEAHH K T EA+ AAV+LS RYI+
Sbjct: 330 IEKDSALERRFQPVQVGEPSTEESILILKGLRDKYEAHHKVKITDEALEAAVNLSHRYIT 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEA ++ ++ L+ PPD + +E+ V+ E
Sbjct: 390 DRFLPDKAIDLMDEAAAKVRLK-----------NLTAPPDVKNLEEELEKVRKEKEEAIN 438
Query: 557 SRLKYDDVVASMGDTSEIVVE----SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
++ +++ +EI E D E VV +DIA V S W+GIPV ++
Sbjct: 439 TQ-EFEKAAKLRDRENEIKNELERIKKDWQNQKDSEVPVVTVEDIANVVSRWTGIPVNKL 497
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ LEE L +RV+GQDEAV A++RAV+R+RVG+KDP RP + +F GPTGVGK
Sbjct: 498 TETESEKLLKLEEILHQRVVGQDEAVKAVARAVRRARVGIKDPKRPIGSFIFLGPTGVGK 557
Query: 673 TELAKSLAACYFGS 686
TEL+K+LA FG
Sbjct: 558 TELSKALAEAMFGD 571
>gi|405981990|ref|ZP_11040314.1| hypothetical protein HMPREF9240_01320 [Actinomyces neuii BVS029A5]
gi|404390781|gb|EJZ85847.1| hypothetical protein HMPREF9240_01320 [Actinomyces neuii BVS029A5]
Length = 841
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/618 (41%), Positives = 364/618 (58%), Gaps = 54/618 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E ++ DK R
Sbjct: 1 MFERFTDRARRVIVLAQDEARNLNHNYIGTEHLLLGLITEGEGVAAKALEMMDVSRDKVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ VV+I S + Q P +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 DEVVTIIGSGD---------QPVP----GHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL LG D+ + V L G + +S G+
Sbjct: 108 ILLGLIREGEGVAAQVLTNLGADLQTVRHNVVQLLSGYQGGQAEGGETVGVGGSSSPQGQ 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ ++ L+QF +LT A E+ +DPVIGR+ E++R++QIL RRTKNNP+L+G
Sbjct: 168 KSG--------SAILDQFGRNLTKAAHEQKLDPVIGRKNEMERVMQILSRRTKNNPVLIG 219
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKT++ EGLA IV +VP L K++ SLDMG L+AG++ RG+ E R+ ++ EI
Sbjct: 220 EPGVGKTSVVEGLAQAIVAGDVPETLKDKQLYSLDMGSLVAGSRYRGDFEERLKKVLKEI 279
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 280 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTNDEYRKH 334
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + +P+ E+ IL GLR++YEAHH T EAI AA LS RYIS
Sbjct: 335 IEKDAALERRFQPVRVEQPTVEETELILKGLRDRYEAHHRVIITDEAIKAAATLSDRYIS 394
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGS 557
DR+LPDKAIDL+DEAG+R I ++ PP E+R + + + +V +
Sbjct: 395 DRFLPDKAIDLIDEAGARLRIRR-----------MTAPP-----ELREIDEKIADVRRKK 438
Query: 558 RLKYDD----VVASMGDTSEIVVESSLPSAS-----DDDEPAVVGPDDIAAVASLWSGIP 608
DD AS+ D + + E S D D A V + IA V ++ +GIP
Sbjct: 439 ESAIDDQDFEAAASLRDQEKKLSEERASKESEWKSGDMDRIAEVTEESIAEVLAMSTGIP 498
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E+ L KR+IGQDEAV A+S++++R+R GLKDP RP + +F GPT
Sbjct: 499 VFKLTETESAKLLHMEDALHKRIIGQDEAVKALSKSIRRTRAGLKDPKRPGGSFIFAGPT 558
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAK+LA FG
Sbjct: 559 GVGKTELAKALAEFLFGD 576
>gi|291303744|ref|YP_003515022.1| ATPase AAA-2 domain-containing protein [Stackebrandtia nassauensis
DSM 44728]
gi|290572964|gb|ADD45929.1| ATPase AAA-2 domain protein [Stackebrandtia nassauensis DSM 44728]
Length = 854
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/613 (41%), Positives = 367/613 (59%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQAPSG-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A S SG+
Sbjct: 108 ILLGLIREGEGVAAQVLIKLGADLNRVRQQVLQLLSG---YQGKEPAGATA--GGSASGE 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ SP L+QF +LT A + +DPVIGRE EI+R++Q+L RR+KNNP+L+G
Sbjct: 163 QSQSSSP------VLDQFGRNLTQAARDGKLDPVIGREKEIERVMQVLSRRSKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA EGLA IV+ VP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAAVEGLAQAIVKGSVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 332 LEKDAALERRFQPIQVAEPSLSHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYIS 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R QA +
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDERIAQARKDKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + D + + + A D D V + IA V + W+GIPV ++T
Sbjct: 441 AQDFERAAQLRDNEKQLQDQREKREKEWKAGDLDTVTEVDDEMIAEVLANWTGIPVYKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ +AV A+S+A++R+R GLKDP RP+ + +F GP+GVGK+
Sbjct: 501 EEETSRLLKMEEELHKRIIGQHDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPSGVGKS 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FGS
Sbjct: 561 ELSKALAEFLFGS 573
>gi|145596784|ref|YP_001161081.1| ATPase [Salinispora tropica CNB-440]
gi|145306121|gb|ABP56703.1| ATPase AAA-2 domain protein [Salinispora tropica CNB-440]
Length = 844
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/620 (42%), Positives = 373/620 (60%), Gaps = 64/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPA------------- 151
Query: 259 TAALKSPGRTRASA---LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
AA +PG S L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+
Sbjct: 152 -AAGTAPGEAAPSTSLVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPV 210
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGL+ RIV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++
Sbjct: 211 LIGEPGVGKTAVVEGLSQRIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVL 270
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+
Sbjct: 271 KEIRTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEY 325
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EPS + IL GLR++YEAHH T A+ AA L+ R
Sbjct: 326 RKHLEKDAALERRFQPIQVGEPSLPHTIEILKGLRDRYEAHHRVSITDAALVAAATLADR 385
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEV 553
YISDR+LPDKAIDL+DEAG+R I ++ PPD D+ + I V+ E
Sbjct: 386 YISDRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLRDFDERIAQVRRDKE- 433
Query: 554 VQGSRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSG 606
S + D A + DT + ++ A D D V + IA V W+G
Sbjct: 434 ---SAIDAQDFERAAQLRDTEKQLLGQKAQREKEWKAGDLDVVTEVDDEQIAEVLGNWTG 490
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T +E L+ +E++L KRVIGQ++AV A+S+A++R+R GLKDP RP+ + +F G
Sbjct: 491 IPVYKLTEEETSRLLRMEDELHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAG 550
Query: 667 PTGVGKTELAKSLAACYFGS 686
P+GVGKTEL+K+LA FGS
Sbjct: 551 PSGVGKTELSKALAEFLFGS 570
>gi|159040200|ref|YP_001539453.1| ATPase [Salinispora arenicola CNS-205]
gi|157919035|gb|ABW00463.1| ATPase AAA-2 domain protein [Salinispora arenicola CNS-205]
Length = 844
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/620 (42%), Positives = 373/620 (60%), Gaps = 64/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPA------------- 151
Query: 259 TAALKSPGRTRASA---LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
AA +PG S L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+
Sbjct: 152 -AAGTAPGEAAPSTSLVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPV 210
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGL+ RIV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++
Sbjct: 211 LIGEPGVGKTAVVEGLSQRIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVL 270
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+
Sbjct: 271 KEIRTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEY 325
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EPS + IL GLR++YEAHH T A+ AA L+ R
Sbjct: 326 RKHLEKDAALERRFQPIQVGEPSLAHTIEILKGLRDRYEAHHRVSITDAALVAAATLADR 385
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEV 553
YISDR+LPDKAIDL+DEAG+R I ++ PPD D+ + I V+ E
Sbjct: 386 YISDRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLRDFDERIAQVRRDKE- 433
Query: 554 VQGSRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSG 606
S + D A + DT + ++ A D D V + IA V W+G
Sbjct: 434 ---SAIDAQDFERAAQLRDTEKQLLGQKAQREKEWKAGDLDVVTEVDDEQIAEVLGNWTG 490
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T +E L+ +E++L KRVIGQ++AV A+S+A++R+R GLKDP RP+ + +F G
Sbjct: 491 IPVYKLTEEETSRLLRMEDELHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAG 550
Query: 667 PTGVGKTELAKSLAACYFGS 686
P+GVGKTEL+K+LA FGS
Sbjct: 551 PSGVGKTELSKALAEFLFGS 570
>gi|16077154|ref|NP_387967.1| class III stress response-related ATPase [Bacillus subtilis subsp.
subtilis str. 168]
gi|221307897|ref|ZP_03589744.1| class III stress response-related ATPase [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312218|ref|ZP_03594023.1| class III stress response-related ATPase [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317152|ref|ZP_03598446.1| class III stress response-related ATPase [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321415|ref|ZP_03602709.1| class III stress response-related ATPase [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402774329|ref|YP_006628273.1| class III stress response-related ATPase [Bacillus subtilis QB928]
gi|418034764|ref|ZP_12673233.1| class III stress response-related ATPase [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|452916619|ref|ZP_21965241.1| negative regulator of genetic competence ClpC/MecB [Bacillus
subtilis MB73/2]
gi|586900|sp|P37571.1|CLPC_BACSU RecName: Full=Negative regulator of genetic competence ClpC/MecB
gi|442360|gb|AAA19233.1| ClpC adenosine triphosphatase [Bacillus subtilis]
gi|467474|dbj|BAA05320.1| clpA/clpB family [Bacillus subtilis]
gi|2632353|emb|CAB11862.1| class III stress response-related ATPase, AAA+ superfamily
[Bacillus subtilis subsp. subtilis str. 168]
gi|351468418|gb|EHA28638.1| class III stress response-related ATPase [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|402479515|gb|AFQ56024.1| Class III stress response-related ATPase, AAA+superfamily [Bacillus
subtilis QB928]
gi|407955777|dbj|BAM49017.1| class III stress response-related ATPase [Bacillus subtilis
BEST7613]
gi|407963048|dbj|BAM56287.1| class III stress response-related ATPase [Bacillus subtilis
BEST7003]
gi|452114528|gb|EME04928.1| negative regulator of genetic competence ClpC/MecB [Bacillus
subtilis MB73/2]
Length = 810
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 268/610 (43%), Positives = 370/610 (60%), Gaps = 52/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI KA +A
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREG--------EGIAA-KALQA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + ++ + +G+ S + ++ K+V E +++ +R G++++ EHI
Sbjct: 53 L-GLGSEKIQKEVESLIGRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G N A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS----------------NETGSSAA 152
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
S T L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 153 GTNSNANT--PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + +PS +++++IL GLR++YEAHH T +AI AAV LS RYISDR
Sbjct: 326 KDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGS+ + F + PP+ E + + E + +
Sbjct: 386 FLPDKAIDLIDEAGSKVRLRSF-----------TTPPNLKELEQKLDEVRKEKDAAVQSQ 434
Query: 561 YDDVVASMGDTSEIV---VESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ DT + + VE + S + E + V DDIA V S W+G+PV +I
Sbjct: 435 EFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQT 494
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 495 ETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 554
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 555 ARALAESIFG 564
>gi|392945929|ref|ZP_10311571.1| ATPase with chaperone activity, ATP-binding subunit [Frankia sp.
QA3]
gi|392289223|gb|EIV95247.1| ATPase with chaperone activity, ATP-binding subunit [Frankia sp.
QA3]
Length = 834
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 258/624 (41%), Positives = 369/624 (59%), Gaps = 72/624 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G K G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGK-----------------GE 150
Query: 259 TAALKSPGRTRASA---LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
TA +P S L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+
Sbjct: 151 TATSGAPAEGTPSTSLVLDQFGRNLTAAARESKLDPVIGREKEIERVMQVLSRRTKNNPV 210
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++
Sbjct: 211 LIGEPGVGKTAVVEGLAQAIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVL 270
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+
Sbjct: 271 KEIRTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEY 325
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ R
Sbjct: 326 RKHLEKDAALERRFQPIQVAEPSVAHTIEILKGLRDRYEAHHRVSITDAALVAAASLADR 385
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YISDR+LPDKAIDL+DEAGSR I ++ PPD ++ E +
Sbjct: 386 YISDRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPD--------LREFDERIA 426
Query: 556 GSRLKYDDVV--------ASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVAS 602
G R + + AS+ D + ++ A D D A VG ++IA V +
Sbjct: 427 GVRRDKESAIDAQDFEKAASLRDKEKTLLSEKAKREKEWKAGDMDVVAEVGDEEIAEVLA 486
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
+W+GIPV ++T +E L+ +E++L +RVIGQ +A+ A+S+A++R+R GLKDP RP +
Sbjct: 487 IWTGIPVFKLTEEETARLLRMEDELHRRVIGQQQAIKAVSQAIRRTRAGLKDPKRPGGSF 546
Query: 663 LFCGPTGVGKTELAKSLAACYFGS 686
+F GP+GVGKTEL+K+LA FG
Sbjct: 547 IFAGPSGVGKTELSKTLAEFLFGD 570
>gi|269128670|ref|YP_003302040.1| ATPase AAA-2 domain-containing protein [Thermomonospora curvata DSM
43183]
gi|268313628|gb|ACZ00003.1| ATPase AAA-2 domain protein [Thermomonospora curvata DSM 43183]
Length = 837
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 376/616 (61%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ + G E++ S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLHG--YTQGKEPA-STGPSESTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLVG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQKIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLSHTIEILKGLRDRYEAHHRVSITDGALVAAAQLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD +Y ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREYDEKIAQVRREKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D A++ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDEQDFEKAAALRDKEKQLLAAKAQREKEWKAGDMDVVAEVTEELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +EE+L KRVIGQ++A+ A+S++++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEETSRLLRMEEELHKRVIGQEDAIKALSQSIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKTLAEFLFG 568
>gi|291438069|ref|ZP_06577459.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
gi|291340964|gb|EFE67920.1| ATP-dependent Clp protease [Streptomyces ghanaensis ATCC 14672]
Length = 841
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/616 (42%), Positives = 372/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQD+AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQDDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|373253679|ref|ZP_09541797.1| ATP-dependent Clp protease ATP-binding subunit [Nesterenkonia sp.
F]
Length = 868
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 369/616 (59%), Gaps = 53/616 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES I++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLDISLGGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V N + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EKVQEKIGPGQN-------------APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL L D+N + + L G G++ + A GV +++ G
Sbjct: 108 ILLGLIREGEGVAAQVLVELNADLNKVRQQVIQLLSGYQGGGGQDKAGA-GVGQSTGEGT 166
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A + L+QF +LTA A E +DPV+GR+ E +R++Q+L RRTKNNP+L+G
Sbjct: 167 PAG--------SVVLDQFGRNLTAAAREAQLDPVVGRDYERERVMQVLSRRTKNNPVLIG 218
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 219 EPGVGKTAVVEGLAQAIVAGDVPEILRDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 278
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +N+LKP L RGELQ I +TT DE+R
Sbjct: 279 KTRGDIILFIDEIHTLVGAGAA----EGA-IDAANILKPMLARGELQTIGATTMDEYRKH 333
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS E +IL GLR++YEAHH T EA+ AA L+ RYI+
Sbjct: 334 IEKDAALERRFQPIQVEEPSVEITTQILRGLRDRYEAHHKVSITEEALEAASSLANRYIN 393
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R I+ ++ PP+ +Y +I V+ E
Sbjct: 394 DRFLPDKAIDLIDEAGARLRIQR-----------MTAPPELKEYDAQIEDVRREKEAA-- 440
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ D AS+ D + +VE + DE A V D +A V + +GIPV
Sbjct: 441 --IDAQDFEGAASLRDKEQRLVEERERKEEEWKSGSMDEIAEVDADLVAEVLAFSTGIPV 498
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L +EE+L KRVIGQ+EA+ ++SRA++R+R GLKDPNRP+ + +F GPTG
Sbjct: 499 FKLTEQESDRLKRMEEELHKRVIGQEEAIKSLSRAIRRTRAGLKDPNRPSGSFIFAGPTG 558
Query: 670 VGKTELAKSLAACYFG 685
VGKTELAK+LA FG
Sbjct: 559 VGKTELAKTLAEFLFG 574
>gi|217967862|ref|YP_002353368.1| ATPase [Dictyoglomus turgidum DSM 6724]
gi|217336961|gb|ACK42754.1| ATPase AAA-2 domain protein [Dictyoglomus turgidum DSM 6724]
Length = 823
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/611 (42%), Positives = 381/611 (62%), Gaps = 43/611 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ ++ T+RA + ++ +Q EA+ L V T+H+LLGLI E E GI A +
Sbjct: 1 MMDKLTQRAYRVLLLAQEEARRLNYSTVGTEHILLGLIRE--------EGGI----AAQV 48
Query: 141 VVSIWHSTNN--QDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
++++ N + + +G S A +PF+ K+V E A E ++ +N+I EH
Sbjct: 49 LINLGLDLNQLRNEIERLIGRGDGTSYGA-LPFTSRAKKVLEYASESAQELNHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A VL+ +GV + + + + +L GE +P+ +G ++ + S
Sbjct: 108 LLLGLLKEGEGVAAHVLEGMGVRLEDVT-IEILKLLGEPI----DPTKIRGRQQMNTSNN 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ K RT + L++F DLT A + +DP+IGRE E++RIIQIL RRTKNNP+L+G
Sbjct: 163 NSLKKK--RTVTATLDEFGRDLTQLARQGKLDPIIGREKELERIIQILSRRTKNNPVLVG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAI EGLA +IV EVP LL+KRI+++DMG ++AG K RGE E R+ +I E+
Sbjct: 221 EPGVGKTAIVEGLAQKIVDGEVPDTLLNKRIVAIDMGSIVAGTKYRGEFEERMQRIIEEV 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + DVILFIDE+HTL+G+G +D +N+LKPSL +GE+Q I +TT E+R
Sbjct: 281 KMAKDVILFIDEIHTLVGAGAA-----EGAVDAANILKPSLAKGEIQLIGATTPSEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP++++EP+ E+ ++IL GLREKYE +H K T EAI AV LS RYI+
Sbjct: 336 IEKDGALERRFQPIMVNEPTPEETIQILKGLREKYENYHRVKITDEAIEEAVKLSVRYIT 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAID++DEA +R R ++Q++ + S + E+ ++ E+ R
Sbjct: 396 DRFLPDKAIDVIDEASARV------RLRKQKSTVHS----NLELELARIREQKEI--AIR 443
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPA---VVGPDDIAAVASLWSGIPVQQITAD 615
+ + A + D E +E L + D P+ VV P+D+A V + W+GIPV Q+ +
Sbjct: 444 NQAFERAAQLRD-EERKIEEYLRNFIDTSSPSDLGVVTPEDVAQVVATWTGIPVAQLLIE 502
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
ER L+ +EE+L KR+I QDEAV +SRA++RSR GLKDP RP +F GPTGVGKTEL
Sbjct: 503 ERERLLRMEEELHKRIISQDEAVRVVSRAIRRSRSGLKDPRRPIGVFMFLGPTGVGKTEL 562
Query: 676 AKSLAACYFGS 686
A++LA FG+
Sbjct: 563 ARALAEYLFGN 573
>gi|329939478|ref|ZP_08288814.1| Clp-family ATP-binding protease [Streptomyces griseoaurantiacus
M045]
gi|329301707|gb|EGG45601.1| Clp-family ATP-binding protease [Streptomyces griseoaurantiacus
M045]
Length = 841
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/616 (42%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V D IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGDLIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|375097571|ref|ZP_09743836.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora marina XMU15]
gi|374658304|gb|EHR53137.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora marina XMU15]
Length = 849
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/616 (41%), Positives = 370/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG---YQGKEPAEA---------GT 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 156 GRGEGTP--SSSLVLDQFGRNLTASAREGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQNIVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 274 KTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLEEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 329 IEKDAALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIN 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD---------DYWQEIRTVQA 549
DR+LPDKAIDL+DEAG+R I ++ PPD D +E +
Sbjct: 389 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADVRREKESAID 437
Query: 550 MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ + +RL+ D+ +G SE D D A V + IA V + W+GIPV
Sbjct: 438 AQDFERAARLR-DEEKTLLGQKSE---REKQWKDGDLDVVAEVDDEQIAEVLANWTGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E +L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+G
Sbjct: 494 FKLTEEETTRLLRMETELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKALANFLFG 569
>gi|408530234|emb|CCK28408.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptomyces davawensis JCM 4913]
Length = 841
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/616 (42%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V D IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGDLIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQTDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|420156532|ref|ZP_14663374.1| negative regulator of genetic competence ClpC/MecB [Clostridium sp.
MSTE9]
gi|394757462|gb|EJF40494.1| negative regulator of genetic competence ClpC/MecB [Clostridium sp.
MSTE9]
Length = 821
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 251/604 (41%), Positives = 371/604 (61%), Gaps = 34/604 (5%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
F FTE+A A+ + A++LG + ++H++LGL+ E G + ++K
Sbjct: 4 FNGFTEKANTALNLAIESAENLGHTYIGSEHIVLGLLKE-----GTGVAATVLNK----- 53
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ + + Q + G S +A F+ +KR+ + AV + G+N++ EH+ +
Sbjct: 54 LQVTAAQLEQLMSEKIGTGTKTSLSAD-DFTPRSKRILQIAVMEAARLGHNYVGTEHLLI 112
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
+ + D R L+ LG + S L G + + A G+ S SGK
Sbjct: 113 AILSEGDSYGVRFLQSLGAKSGDILNEISSALSS-----GEDSAPAPGMSSTS-SGKG-- 164
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
G++ L+QF DLTA A++ IDPVIGR+TEI+R+IQIL RRTKNNP L+GE G
Sbjct: 165 ----GKSATKTLDQFGRDLTALAAKGGIDPVIGRQTEIERVIQILSRRTKNNPCLIGEPG 220
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTA+AEGLA++I + +VP L +KR+++LD+ ++AG K RG+ E R+ + E++ +
Sbjct: 221 VGKTAVAEGLALKIAEGQVPELLKNKRVITLDLTGMVAGTKYRGDFEERIKAAMDEVRSA 280
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G++ILFIDE+HT+IG+G+ +G+ D +N+LKP+L RG+ Q I +TT +E+R EK
Sbjct: 281 GNIILFIDELHTIIGAGSA----EGS-TDAANILKPALARGDFQVIGATTINEYRKYIEK 335
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQPV++ EPS+E+A+ IL GLR++YEAHH K T EAI+AAV LS+RYI+DR+
Sbjct: 336 DAALERRFQPVMVGEPSEEEAIEILKGLRDRYEAHHKVKITDEAIDAAVKLSSRYIADRF 395
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561
LPDKAIDL+DEA SR + F + Q L K + QE E + ++++
Sbjct: 396 LPDKAIDLMDEASSRVRLRAFTAPTDLQE--LEKSIKELEQEKAAAINAQEFERAAKVRD 453
Query: 562 DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLV 621
++ A + +L + E V P+DIA V S+W+GIPV Q+T +E L+
Sbjct: 454 EEKKAKEELER----QKNLWTEKRSHEGGEVTPEDIANVVSVWTGIPVVQLTEEESERLL 509
Query: 622 GLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAA 681
LEE L +R++GQ+EAV+A+SRA++R RVGLKDP RP + +F GPTGVGKTEL K+LA
Sbjct: 510 HLEETLHQRLVGQEEAVSAVSRAIRRGRVGLKDPKRPVGSFIFLGPTGVGKTELTKALAE 569
Query: 682 CYFG 685
FG
Sbjct: 570 AMFG 573
>gi|429194529|ref|ZP_19186617.1| negative regulator of genetic competence ClpC/MecB [Streptomyces
ipomoeae 91-03]
gi|428669694|gb|EKX68629.1| negative regulator of genetic competence ClpC/MecB [Streptomyces
ipomoeae 91-03]
Length = 841
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/616 (42%), Positives = 372/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQD+AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQDDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|386841647|ref|YP_006246705.1| Clp-family ATP-binding protease [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374101948|gb|AEY90832.1| Clp-family ATP-binding protease [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451794942|gb|AGF64991.1| Clp-family ATP-binding protease [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 840
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/616 (42%), Positives = 372/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETAAAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAAVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +EE+L KRVIGQ++AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEEELHKRVIGQNDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|359775853|ref|ZP_09279175.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
[Arthrobacter globiformis NBRC 12137]
gi|359306869|dbj|GAB13004.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
[Arthrobacter globiformis NBRC 12137]
Length = 830
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/613 (41%), Positives = 369/613 (60%), Gaps = 50/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES I++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLSISLDGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE S GV ++ G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKE----STGAGVGQSQAEGT 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A + L+QF +LT A E +DPVIGRE E++R++Q+L RRTKNNP+L+G
Sbjct: 164 PAG--------SVVLDQFGRNLTQAARENKLDPVIGREQEMERVMQVLSRRTKNNPVLIG 215
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP + K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 216 EPGVGKTAVVEGLAQAIVRGDVPETIKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 275
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 276 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKH 330
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T A+ +A +LS RYIS
Sbjct: 331 IEKDAALERRFQPIQVKEPSVAHAIEILKGLRDRYEAHHRVTITDGALASAANLSERYIS 390
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PP+ + R + E
Sbjct: 391 DRFLPDKAIDLIDEAGARLRIRR-----------MTAPPELKEMDERISELKMEKESAID 439
Query: 559 LKYDDVVASMGDTSEIVV------ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + A++ D + ++ E + DD + V D IA V + +GIPV ++
Sbjct: 440 AQDFEGAAALRDKEQKLITERSEKERHWKTGGMDD-ISEVDEDLIAEVLANSTGIPVFKL 498
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T +E L+ +E++L KRV+GQDEA+ A+S+A++R+R GLKDP RP + +F GPTGVGK
Sbjct: 499 TEEESSRLLKMEDELHKRVVGQDEAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPTGVGK 558
Query: 673 TELAKSLAACYFG 685
TELAK+LA FG
Sbjct: 559 TELAKALAEFLFG 571
>gi|152968278|ref|YP_001364062.1| ATPase AAA [Kineococcus radiotolerans SRS30216]
gi|151362795|gb|ABS05798.1| ATPase AAA-2 domain protein [Kineococcus radiotolerans SRS30216]
Length = 840
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 261/619 (42%), Positives = 374/619 (60%), Gaps = 62/619 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQEII------------GQGQQAPSG-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKG---VRENSI 255
I LGL +G A +VL +LG D+N + ++ L G EG+EP+ A G RE +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVITLLSGH---EGKEPTTAAGGESQREGTP 164
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+G + L+QF +LT A E +DPVIGRE +I+R++Q+L RRTKNNP+
Sbjct: 165 AG------------SLVLDQFGRNLTQAAREGKLDPVIGREQQIERVMQVLSRRTKNNPM 212
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE+GVGKTA+ EGLA IV+ +VP L K+I +LD+G L+AG++ RG+ E R+ ++
Sbjct: 213 LIGEAGVGKTAVVEGLAQEIVRGQVPETLRDKQIYTLDLGALVAGSRYRGDFEERLKKVL 272
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ GD++LFIDE+HTL+G+G +G +D +++LKP L RGELQ + +TT DE
Sbjct: 273 KEIRTRGDIVLFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTVGATTLDEF 327
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
+ EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T A+ AA ++ R
Sbjct: 328 KKYIEKDPALERRFQPIQVPEPSLPHAIEILKGLRDRYEAHHRVTITDGALVAAATMADR 387
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEV 553
YI+DRYLPDKAIDL+DEAG+R I ++ PPD ++ + I V+ E
Sbjct: 388 YINDRYLPDKAIDLIDEAGARLRIRR-----------MTAPPDLREFDERIADVRREKE- 435
Query: 554 VQGSRLKYDDV--VASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSG 606
S + D AS+ D + V + D A V + IA V ++ +G
Sbjct: 436 ---SAIDAQDFEKAASLRDKEKTVTAQRATREKEWRSGGLDIVAEVDEELIAEVLAVSTG 492
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T +E L+ +E +L KRVIGQ++A+ A+S+A++R+R GLKDP RP + +F G
Sbjct: 493 IPVVRLTEEESTRLLNMEAELHKRVIGQNDAIKALSQAIRRTRAGLKDPKRPGGSFIFAG 552
Query: 667 PTGVGKTELAKSLAACYFG 685
PTGVGKTELAK+LA FG
Sbjct: 553 PTGVGKTELAKALAEFLFG 571
>gi|376259729|ref|YP_005146449.1| chaperone ATPase [Clostridium sp. BNL1100]
gi|373943723|gb|AEY64644.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
sp. BNL1100]
Length = 810
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/612 (42%), Positives = 362/612 (59%), Gaps = 51/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+++RFTE+A +A+ FSQ+ A LG + V T+H+LLGL+ E + G I
Sbjct: 1 MYQRFTEKAERAIGFSQQAAVDLGHNYVGTEHILLGLVKEGTGVAARVLQGQGI------ 54
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAK-MPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ + GK + + + F+ TKRV E A + +R G +I EH+
Sbjct: 55 ------TEEKILKEIEELIGKGDAEGTQPVGFTPRTKRVLELAFKEARRMGQGYIGTEHL 108
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LG+ + A R++ LGVD L L K + E S
Sbjct: 109 LLGIMKEGESVAVRIMMDLGVDPQKLLN-----------------ELVKILTEESPGSNG 151
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+A S + L QF DLT A + +DPVIGR+ EI+R+IQIL RRTKNNP L+GE
Sbjct: 152 SAKSSNSNSNTPTLNQFGRDLTDMARDGKVDPVIGRDKEIERVIQILSRRTKNNPCLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA +IV+ +P L KR+++LD+ ++AGAK RGE E R+ + EI+
Sbjct: 212 PGVGKTAIAEGLAQKIVEGNIPEILSDKRVVTLDLSSMVAGAKYRGEFEDRLKKAMEEIR 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
K+ +VILFIDE+HT++G+G +D SN+LKPSL RGE+Q I +TT +E+R
Sbjct: 272 KTTNVILFIDELHTIVGAGAA-----EGAIDASNILKPSLARGEIQVIGATTLNEYRKHI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EPS+E+AV IL G+R+KYEAHH K T +A+ AAV L RYI+D
Sbjct: 327 EKDAALERRFQPITVGEPSKEEAVEILKGVRDKYEAHHRVKITDDALEAAVKLGDRYITD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
R+LPDKAIDL+DEA SR ++ F ++ E++ LSK +D IR E
Sbjct: 387 RFLPDKAIDLIDEAASRIRLKTFTAPPDLKEMEERVEKLSKEKEDA---IRC----QEFE 439
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ +R++ DD + +I + + + D V D+IA + + W+GIPV+++
Sbjct: 440 KAARIR-DDEQKLKNELDKIRDQWHQKNQTKTD---TVTEDEIADIVASWTGIPVKRLAE 495
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
+E L+ +EE L KRVIGQDEAV +IS+A++R RVGLKDP RP + +F GPTGVGKTE
Sbjct: 496 EESERLLKMEETLHKRVIGQDEAVKSISKAIRRGRVGLKDPKRPVGSFIFMGPTGVGKTE 555
Query: 675 LAKSLAACYFGS 686
L K+LA FG
Sbjct: 556 LCKALAEAMFGD 567
>gi|288920479|ref|ZP_06414787.1| ATPase AAA-2 domain protein [Frankia sp. EUN1f]
gi|288348131|gb|EFC82400.1| ATPase AAA-2 domain protein [Frankia sp. EUN1f]
Length = 834
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/617 (42%), Positives = 373/617 (60%), Gaps = 58/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G K +P+ A E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKG--DPATAGAPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTAAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSVAHTIEILKGLRDRYEAHHRVSITDAALVAAASLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ + I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDERIANVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ A D D A VG ++IA V ++W+GIPV
Sbjct: 434 SAIDAQDFEKAASLRDKEKTLLAEKAKREKEWKAGDMDVVAEVGDEEIAEVLAIWTGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ++A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEETARLLRMEDELHKRVIGQEQAIKAVSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKTLAEFLFGD 570
>gi|410727947|ref|ZP_11366140.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
sp. Maddingley MBC34-26]
gi|410597507|gb|EKQ52118.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
sp. Maddingley MBC34-26]
Length = 823
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 246/613 (40%), Positives = 370/613 (60%), Gaps = 56/613 (9%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKAREA 140
+ + TERA ++ ++ E++ V T+H+LLG++ ED + L+ G+ +K R
Sbjct: 3 YNKLTERAQVVILEAENESEKFKHGYVGTEHMLLGILKEDGYSAKLLKKYGVDSEKIRTM 62
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + + TDD + + TKR+ + + ++ + +++PEHI
Sbjct: 63 IQRYLGYGDIKRTDD------------NILLTPRTKRLVDESFAAAKKLNHKYVSPEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L L ++G A +LK L ++ ++ + L G E+ +S K
Sbjct: 111 LALLNQEEGMAYTILKSLNINFTIISEELLVFLSG--------------TYEDKVSDKNI 156
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
A T L+++ DLTA +SE +DPVIGR++E QR+++ILCRR KNNP L+GE
Sbjct: 157 AESKKANT--PMLDKYGRDLTALSSEGTLDPVIGRDSETQRLLEILCRRIKNNPCLIGEP 214
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTA+ EGLA RIV+ +P L +KR++SLD+ ++AGAK RGE E R+ + EI K
Sbjct: 215 GVGKTAVVEGLAQRIVEGNIPEILKNKRVVSLDLTSMIAGAKYRGEFEERLKKTMEEIIK 274
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
++I+FIDE+HT+IG+G G +G +D SN+LKP+L RGE+QCI +TT DE+R E
Sbjct: 275 DKNIIIFIDEIHTIIGAG----GAEG-AIDASNILKPALARGEIQCIGATTIDEYRKYIE 329
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EP++E+ + IL GLR+KYEAHH + T EA+ AAV+LS RYI+DR
Sbjct: 330 KDSALERRFQPVTVGEPTKEETLEILKGLRDKYEAHHRVEITDEALEAAVNLSDRYITDR 389
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQGSR 558
++PDKAIDL+DE ++ I+ L+ PPD D ++I + E + R
Sbjct: 390 FMPDKAIDLIDEGAAKVRIQ-----------NLTAPPDLKDLEEKIENIGKEKE--EAIR 436
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPA------VVGPDDIAAVASLWSGIPVQQI 612
++ + A++ D E ++ L S D+ + VV + IA+V S W+ IP++++
Sbjct: 437 VQDFERAANLRD-KERNLKDKLSSMKDNWDTQNSIKLLVVNAEKIASVVSSWTKIPIEKL 495
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ LE L KRV+GQ+EAV +I+RAV+R+RVG+KDPNRP + +F GPTGVGK
Sbjct: 496 TESESERLLNLENILHKRVVGQNEAVKSIARAVRRARVGIKDPNRPIGSFIFLGPTGVGK 555
Query: 673 TELAKSLAACYFG 685
TEL+K+LA FG
Sbjct: 556 TELSKALAEAMFG 568
>gi|324998065|ref|ZP_08119177.1| putative ATP-dependent Clp protease [Pseudonocardia sp. P1]
Length = 848
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/616 (41%), Positives = 377/616 (61%), Gaps = 57/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP +E+ G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG---YQGKEP------QESGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
S + L+QF +LT +A E +DPVIGRE EI+RI+Q+L RRTKNNP+L+G
Sbjct: 159 GEGTPSS----SLVLDQFGRNLTQQAREGKLDPVIGREKEIERIMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E+GVGKTA EGL IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EAGVGKTAAVEGLGQAIVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ +SEPS + IL GLR++YEAHH T +A+++A L+ RYI+
Sbjct: 330 VEKDPALERRFQPIQVSEPSVTHTIEILKGLRDRYEAHHRVTITDDALSSAATLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV-- 554
DR+LPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIANVRRDKESAID 438
Query: 555 -----QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ + L+ D +G+ +E + D D A V + IA V W+GIPV
Sbjct: 439 AQDFERAAHLR-DQEKTLLGEKAE---REKQWKSGDLDVVAEVDSEQIAEVLGNWTGIPV 494
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV ++S+A++R+R GLKDP RP+ + +F GP+G
Sbjct: 495 FKLTEEETTRLLRMEDELHKRIIGQEDAVKSVSQAIRRTRAGLKDPKRPSGSFIFAGPSG 554
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 555 VGKTELSKALANFLFG 570
>gi|452958959|gb|EME64301.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Amycolatopsis
decaplanina DSM 44594]
Length = 852
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/616 (41%), Positives = 375/616 (60%), Gaps = 57/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G +E++ +G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG-----------YQGGKESTETGS 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LT +A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 157 GRGEGTP--SSSLVLDQFGRNLTVQAREGKLDPVIGRGKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQNIVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 275 KTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLEEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ A L+ RYI+
Sbjct: 330 IEKDAALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDGALVQAATLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV-- 554
DR+LPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADVRRDKESAID 438
Query: 555 -----QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ +RL+ D+ +G E D D A V + IA V + W+GIPV
Sbjct: 439 AQDFERAARLR-DEEKTLLGQKGE---REKQWKDGDLDVVAEVDEEQIAEVLANWTGIPV 494
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+G
Sbjct: 495 FKLTEEETTRLLRMEEELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPSG 554
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LAA FG
Sbjct: 555 VGKTELSKALAAFLFG 570
>gi|374294995|ref|YP_005045186.1| chaperone ATPase [Clostridium clariflavum DSM 19732]
gi|359824489|gb|AEV67262.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
clariflavum DSM 19732]
Length = 810
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/620 (41%), Positives = 368/620 (59%), Gaps = 69/620 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
++ RFTE+A +AV SQ A +LG + V T+HLLLGLI E GIT +K
Sbjct: 1 MYGRFTEKAERAVNLSQESAMALGHNYVGTEHLLLGLIKEGSGVAAKVLQNQGITEEKVL 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
++ ++ G+ ++ + F+ TKRV E + +R G+N+I EH
Sbjct: 61 ------------KEIEELIGHGE-YTGEQPLGFTPRTKRVLELSFREARRMGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ +G+ + A R+L LG++ L + + E A GV +N
Sbjct: 108 LLIGILKEGESVAVRILMDLGLEPQKLYSEVLKMFT-------EEAPGAAGVPKNH---- 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+A+ +P L QF DLT A E DPVIGR+ EI+R+IQIL RRTKNNP L+G
Sbjct: 157 SASSNTP------TLNQFGRDLTEMAREAKFDPVIGRDKEIERVIQILSRRTKNNPCLIG 210
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +IV+ +P L KR+++LD+ ++AGAK RGE E R+ + EI
Sbjct: 211 EPGVGKTAIAEGLAQKIVEGNIPEILKDKRVVTLDLSSMVAGAKYRGEFEERLKKALEEI 270
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+K+G+VILFIDE+HT+IG+G +D SN+LKPSL RGE+Q I +TT DE+R
Sbjct: 271 KKAGNVILFIDEMHTIIGAGAA-----EGAIDASNILKPSLARGEIQVIGATTLDEYRKH 325
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+++ EP+ E+A+ IL G+R+KYEAHH K T EA+ AAV LS RYI+
Sbjct: 326 VEKDAALERRFQPIIVGEPTVEEAIEILKGIRDKYEAHHRVKITDEALVAAVKLSDRYIT 385
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + F + PP+ ++ + E V+ R
Sbjct: 386 DRFLPDKAIDLIDEAASKVRLRSF-----------TAPPN--------LKQLEEQVERLR 426
Query: 559 LKYDDVV-------ASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVASLWS 605
+ +D + A+ E +++ L A +D + V +++A + + W+
Sbjct: 427 KEKEDSIICQEFEKAARIRDEEQRLKNELEKAKNDWQQKNQTTTNTVTEEEVAGIVADWT 486
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV+++ +E L+ +EE L RVIGQ+EAV A+S+A++R RVGLKDP RP + +F
Sbjct: 487 GIPVKRLAEEESERLMKMEEILHNRVIGQEEAVKAVSKAIRRGRVGLKDPKRPVGSFIFL 546
Query: 666 GPTGVGKTELAKSLAACYFG 685
GPTGVGKTEL+K+LA FG
Sbjct: 547 GPTGVGKTELSKALAEALFG 566
>gi|119961353|ref|YP_945989.1| ATP-dependent Clp protease, ATP-binding subunit [Arthrobacter
aurescens TC1]
gi|119948212|gb|ABM07123.1| putative ATP-dependent Clp protease, ATP-binding subunit
[Arthrobacter aurescens TC1]
Length = 830
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/621 (41%), Positives = 372/621 (59%), Gaps = 66/621 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES I++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLSISLDGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE +G E + +G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETAGSGSGQGQPEGTPAGS 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L+QF +LT A E +DPVIGRE E++R++Q+L RRTKNNP+L+G
Sbjct: 168 VV------------LDQFGRNLTQAARENKLDPVIGREQEMERVMQVLSRRTKNNPVLIG 215
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP + K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 216 EPGVGKTAVVEGLAQAIVRGDVPETIKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 275
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 276 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKH 330
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T A+ +A L+ RYIS
Sbjct: 331 IEKDAALERRFQPIQVKEPSVAHAIEILKGLRDRYEAHHRVTITDGALASAAQLAERYIS 390
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PP+ ++AM E + +
Sbjct: 391 DRFLPDKAIDLIDEAGARLRIRR-----------MTAPPE--------LKAMDERIADVK 431
Query: 559 LKYDDVV--------ASMGDTSEIVV------ESSLPSASDDDEPAVVGPDDIAAVASLW 604
++ + + AS+ D + ++ E + S DD + V D IA V +
Sbjct: 432 MEKESAIDAQDFEGAASLRDKEQKLIAERAEKERNWKSGGMDD-ISEVDEDLIAEVLANS 490
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+GIPV ++T +E L+ +E++L KRV+GQ+EA+ A+S+A++R+R GLKDP RP + +F
Sbjct: 491 TGIPVFKLTEEESSRLLKMEDELHKRVVGQNEAIKALSQAIRRTRAGLKDPKRPGGSFIF 550
Query: 665 CGPTGVGKTELAKSLAACYFG 685
GPTGVGKTELAK+LA FG
Sbjct: 551 AGPTGVGKTELAKALAEFLFG 571
>gi|291452160|ref|ZP_06591550.1| ATP-dependent Clp protease [Streptomyces albus J1074]
gi|359151484|ref|ZP_09184191.1| ATP-dependent Clp protease [Streptomyces sp. S4]
gi|421738771|ref|ZP_16177114.1| ATPase with chaperone activity, ATP-binding subunit [Streptomyces
sp. SM8]
gi|291355109|gb|EFE82011.1| ATP-dependent Clp protease [Streptomyces albus J1074]
gi|406692815|gb|EKC96493.1| ATPase with chaperone activity, ATP-binding subunit [Streptomyces
sp. SM8]
Length = 840
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/616 (42%), Positives = 370/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSG--GKEAATAGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIVLFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V D IA V + +GIPV
Sbjct: 434 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDEDLIAEVLATATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+SRA++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSRAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKALAEFLFG 569
>gi|116668736|ref|YP_829669.1| ATPase [Arthrobacter sp. FB24]
gi|116608845|gb|ABK01569.1| ATPase AAA-2 domain protein [Arthrobacter sp. FB24]
Length = 830
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/621 (41%), Positives = 371/621 (59%), Gaps = 66/621 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES I++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLSISLDGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQEII------------GQGQQAPSG-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE + G E + +G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETTGAGVGAGQPEGTPAGS 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L+QF +LT A E +DPVIGRE E++R++Q+L RRTKNNP+L+G
Sbjct: 168 VV------------LDQFGRNLTQAARENKLDPVIGREQEMERVMQVLSRRTKNNPVLIG 215
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP + K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 216 EPGVGKTAVVEGLAQAIVRGDVPETIKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 275
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 276 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKH 330
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T A+ +A +LS RYIS
Sbjct: 331 IEKDAALERRFQPIQVKEPSVAHAIEILKGLRDRYEAHHRVTITDGALASAANLSERYIS 390
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PP+ ++AM E + +
Sbjct: 391 DRFLPDKAIDLIDEAGARLRIRR-----------MTAPPE--------LKAMDERIAELK 431
Query: 559 LKYDDVV--------ASMGDTSEIVV------ESSLPSASDDDEPAVVGPDDIAAVASLW 604
++ + + AS+ D + ++ E + DD + V D IA V +
Sbjct: 432 MEKESAIDAQDFEGAASLRDKEQKLIAERAEKERHWKTGGMDD-ISEVDEDLIAEVLANS 490
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+GIPV ++T +E L+ +E++L KRV+GQ+EA+ A+S+A++R+R GLKDP RP + +F
Sbjct: 491 TGIPVFKLTEEESSRLLKMEDELHKRVVGQNEAIKALSQAIRRTRAGLKDPKRPGGSFIF 550
Query: 665 CGPTGVGKTELAKSLAACYFG 685
GPTGVGKTELAK+LA FG
Sbjct: 551 AGPTGVGKTELAKALAEFLFG 571
>gi|380302202|ref|ZP_09851895.1| ATPase with chaperone activity, ATP-binding subunit
[Brachybacterium squillarum M-6-3]
Length = 863
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/621 (41%), Positives = 372/621 (59%), Gaps = 67/621 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E+ LE+ G+T+D R
Sbjct: 1 MFERFTDRARRVVVLAQDEARLLNHNYIGTEHILLGLIHENEGVGAKALEALGVTLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I N + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVRDIIGEGNQ-------------TPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G+A +VL RL + + + RL G +G+EP+ A G E SG
Sbjct: 108 ILLGLLREGEGTAVKVLSRLKAEPAAVRQEVIERLSG---YQGKEPATAGGPAEGQPSG- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A + +DPVIGRE E +R++Q+L RRTKNNP+L+G
Sbjct: 164 -----------SLVLDQFGRNLTQAARDGNLDPVIGREHEAERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGK+A+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKSAVVEGLAQSIVAGDVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLEEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS V IL GLR++YEAHH T A+ +A +L+ RYI+
Sbjct: 328 IEKDAALERRFQPIQVDEPSIVHTVEILKGLRDRYEAHHKVTITDAALVSAANLADRYIN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR---TVQAMHEVVQ 555
DR+LPDKAIDL+DEAG+R I +R L+ PP+ + R T + E +
Sbjct: 388 DRFLPDKAIDLIDEAGARLRI---RR--------LTAPPELKEFDTRIEDTRKQKEEAID 436
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA----------VVGPDDIAAVASLWS 605
G ++ AS+ DT E L + D+ E A V + IA V + +
Sbjct: 437 GQDF---ELAASLRDT-----EQQLKTERDEKEKAWRHGDSDVVSTVSEEVIAEVLAAAT 488
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIP+ ++T +E L+ +E++L KRVIGQDEA+ A+S+A++R+R GLKDP RP + +F
Sbjct: 489 GIPIVKLTEEESSRLLHMEDELHKRVIGQDEAIKALSQAIRRTRAGLKDPKRPGGSFIFA 548
Query: 666 GPTGVGKTELAKSLAACYFGS 686
GPTGVGKTELAK+LA FG
Sbjct: 549 GPTGVGKTELAKALAEFLFGD 569
>gi|82750232|ref|YP_415973.1| endopeptidase [Staphylococcus aureus RF122]
gi|282915846|ref|ZP_06323611.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus D139]
gi|122063322|sp|Q2YSD6.1|CLPC_STAAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|82655763|emb|CAI80163.1| endopeptidase [Staphylococcus aureus RF122]
gi|282320142|gb|EFB50487.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus D139]
Length = 818
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 265/625 (42%), Positives = 360/625 (57%), Gaps = 82/625 (13%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDY 540
RY+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAV-------H 432
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
QE + + +Y++ +T + S + +DIA V
Sbjct: 433 AQEFENAANLRDKQTKLEKQYEEAKNEWKNTQNGMSTS-------------LSEEDIAEV 479
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+GIP+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP
Sbjct: 480 IAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIG 539
Query: 661 AMLFCGPTGVGKTELAKSLAACYFG 685
+ +F GPTGVGKTELA++LA FG
Sbjct: 540 SFIFLGPTGVGKTELARALAESMFG 564
>gi|283769680|ref|ZP_06342572.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus H19]
gi|283459827|gb|EFC06917.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus H19]
Length = 818
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 265/625 (42%), Positives = 360/625 (57%), Gaps = 82/625 (13%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDY 540
RY+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAV-------H 432
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
QE + + +Y++ +T + S + +DIA V
Sbjct: 433 AQEFENAANLRDKQTKLEKQYEEAKNEWKNTQNGMSTS-------------LSEEDIAEV 479
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+GIP+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP
Sbjct: 480 IAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIG 539
Query: 661 AMLFCGPTGVGKTELAKSLAACYFG 685
+ +F GPTGVGKTELA++LA FG
Sbjct: 540 SFIFLGPTGVGKTELARALAESMFG 564
>gi|269955171|ref|YP_003324960.1| ATPase AAA-2 domain-containing protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269303852|gb|ACZ29402.1| ATPase AAA-2 domain protein [Xylanimonas cellulosilytica DSM 15894]
Length = 852
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/607 (42%), Positives = 363/607 (59%), Gaps = 41/607 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I A QG +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVTEIIGEGQQ------APQGH-------IPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL ++G D+N + + L G +G+EP A G E SG
Sbjct: 108 ILLGLIREGEGVAAQVLTKMGADLNKVRQQVIQLLSG---YQGKEPVAAGGPAEGQPSG- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 -----------SAVLDQFGRNLTQAAREGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQDIVRGDVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + A+ IL GLR++YEAHH T A+ A L+ RYI+
Sbjct: 328 VEKDPALERRFQPIQVAEPSLQHAIEILKGLRDRYEAHHRVSITDSALVTAATLADRYIN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I E + +E + E G R
Sbjct: 388 DRFLPDKAIDLIDEAGARLRIRRMTAPPELKVLDEEISEARREKESAIDEQDFEKAAGLR 447
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
K + A + E + S D D A V + +A V ++ +GIPV ++T +E
Sbjct: 448 DKEKQLTAKRAER-----ERAWKSG-DLDTVATVDEELVAEVLAMSTGIPVVKLTEEESG 501
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ +EE+L KRV+GQ+ A+ A+S+A++R+R GLKDP RP + +F GPTGVGKTELAK+
Sbjct: 502 RLLRMEEELHKRVVGQEAAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPTGVGKTELAKA 561
Query: 679 LAACYFG 685
LA FG
Sbjct: 562 LAEFLFG 568
>gi|348173006|ref|ZP_08879900.1| putative ATP-dependent Clp protease [Saccharopolyspora spinosa NRRL
18395]
Length = 850
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 257/617 (41%), Positives = 373/617 (60%), Gaps = 59/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG---YQGKEPAEAGGRGEGTPSS- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+RI+Q+L RRTKNNP+L+G
Sbjct: 164 -----------SLVLDQFGRNLTQSAREGKLDPVIGREKEIERIMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E+GVGKTA+ EGLA ++V+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EAGVGKTAVVEGLAQKVVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 273 KTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLEEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS + V IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 328 VEKDPALERRFQPIQVGEPSLQHTVEILKGLRDRYEAHHRVSITDSALVAAASLADRYIN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD---------DYWQEIRTVQA 549
DR+LPDKAIDL+DEAG+R I ++ PPD D +E +
Sbjct: 388 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADVRREKESAID 436
Query: 550 MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ + +RL+ D+ +G E A D D A V + IA V + W+GIPV
Sbjct: 437 AQDFERAARLR-DEEKQLLGQKEE---REKQWKAGDLDVVAEVDDEQIAEVLANWTGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+G
Sbjct: 493 FKLTEEETTRLLRMEDELHKRIIGQNDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFGD 569
>gi|443625395|ref|ZP_21109840.1| putative ATP-dependent Clp protease [Streptomyces viridochromogenes
Tue57]
gi|443341108|gb|ELS55305.1| putative ATP-dependent Clp protease [Streptomyces viridochromogenes
Tue57]
Length = 841
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 372/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETAAAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ++AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQNDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|383651370|ref|ZP_09961776.1| ATP-dependent Clp protease [Streptomyces chartreusis NRRL 12338]
Length = 841
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 372/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ++AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQNDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|158312055|ref|YP_001504563.1| ATPase [Frankia sp. EAN1pec]
gi|158107460|gb|ABW09657.1| ATPase AAA-2 domain protein [Frankia sp. EAN1pec]
Length = 834
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/617 (41%), Positives = 373/617 (60%), Gaps = 58/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G K +P+ A E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKG--DPATAGAPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTAAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSVAHTIEILKGLRDRYEAHHRVSITDAALVAAASLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ + I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDERIANVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ A D D A VG ++IA V ++W+GIPV
Sbjct: 434 SAIDAQDFEKAASLRDKEKTLLAEKAKREKEWKAGDMDVVAEVGDEEIAEVLAIWTGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L +RVIGQ++A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEETARLLRMEDELHRRVIGQEQAIKAVSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKTLAEFLFGD 570
>gi|333918015|ref|YP_004491596.1| chaperone activity ATPase [Amycolicicoccus subflavus DQS3-9A1]
gi|333480236|gb|AEF38796.1| ATPase with chaperone activity, ATP-binding subunit
[Amycolicicoccus subflavus DQS3-9A1]
Length = 851
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/613 (41%), Positives = 366/613 (59%), Gaps = 49/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 NQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+ + + L G +G+EP+ A GV
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLTRVRQQVIQLLSG---YQGKEPAEA-GVGRGEAGTP 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +L L+QF +LT A E +DPVIGR+ EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 STSL---------VLDQFGRNLTQAAMEGKLDPVIGRQKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQSIVNGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 330 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R +A E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDERIAEARREKESAID 438
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + D + +V + D D A V + IA V S W+GIPV ++T
Sbjct: 439 AQDFEKAAKLRDKEKQLVAQRAEREKQWRSGDLDVVAQVDDEQIAEVLSNWTGIPVFKLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+++A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 499 EEETSRLLRMEDELHKRIIGQEDAVRAVAKAIRRTRAGLKDPRRPSGSFIFAGPSGVGKT 558
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 559 ELSKALANFLFGD 571
>gi|383809434|ref|ZP_09964954.1| ATP-dependent Clp protease ATP-binding subunit family protein
[Rothia aeria F0474]
gi|383447786|gb|EID50763.1| ATP-dependent Clp protease ATP-binding subunit family protein
[Rothia aeria F0474]
Length = 856
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 257/617 (41%), Positives = 372/617 (60%), Gaps = 56/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGL+ E LES GIT++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHLLLGLVHEGEGIAARALESLGITLNSVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I N + + +PF+ K+V E ++ + + +I EH
Sbjct: 61 EQVQDIIGPGAN-------------APSGHIPFTPRAKKVLELSMREAIQLNHGYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LG+ ++G A +VL +LGV+ AAV + + L G N S +
Sbjct: 108 ILLGMVRANEGVANQVLAKLGVEP---AAVRQAVM-----------DLISGYPGNGDSKE 153
Query: 259 TAALKSPGRTR------ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKN 312
TA + + G +R ++ L+QF +LTA A E +DPVIGR E++R++Q+L RRTKN
Sbjct: 154 TAGVGA-GNSREGTPAGSTILDQFGRNLTAAAREGQLDPVIGRHHEMERVMQVLSRRTKN 212
Query: 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVT 372
NP+L+GE GVGKTA+ EGLA IV +VP L K + +LD+G L+AG++ RG+ E R+
Sbjct: 213 NPVLIGEPGVGKTAVVEGLAQAIVHGDVPETLKDKHLYTLDLGSLVAGSRYRGDFEERLK 272
Query: 373 TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432
++ EI+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT
Sbjct: 273 KVLKEIRTRGDIILFIDEIHTLVGAGAAE-----GAIDAASILKPMLARGELQTIGATTL 327
Query: 433 DEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492
DE+R EKD AL RRFQP+ + EPSQE AV+IL G+R+KYEAHH + EAI AV+L
Sbjct: 328 DEYRKHIEKDAALERRFQPIQVDEPSQELAVQILKGVRDKYEAHHRVTISDEAIETAVNL 387
Query: 493 SARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHE 552
+ARYISDR+LPDKA+DL+DEAG+R I KR ++ PP+ E + +
Sbjct: 388 AARYISDRFLPDKAVDLIDEAGARLRI---KR--------MTAPPEIKVLEEKAGKLKRA 436
Query: 553 VVQGSRLKYDDVVASMGDTSEIVVESSLPSA----SDDDEPAVVGPDDIAAVASLWSGIP 608
R + + A + D + V++ + D V P+ I+ V + +G+P
Sbjct: 437 KEDAIREQDYEKAAGLRDEEQKVLQEKDQKEKAWRENGDAFGEVTPEVISEVLASSTGVP 496
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V +IT +E L+ +E++L KRVIGQ+ A+ A++R+++R+R GLKDPNRP + +F GPT
Sbjct: 497 VYKITEEESSRLLKMEDELHKRVIGQEHAIKALARSIRRTRAGLKDPNRPGGSFIFAGPT 556
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTELAK+LA FG
Sbjct: 557 GVGKTELAKALAEFLFG 573
>gi|78043878|ref|YP_361153.1| negative regulator of genetic competence clpC/mecB
[Carboxydothermus hydrogenoformans Z-2901]
gi|77995993|gb|ABB14892.1| negative regulator of genetic competence clpC/mecB
[Carboxydothermus hydrogenoformans Z-2901]
Length = 811
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/608 (42%), Positives = 361/608 (59%), Gaps = 40/608 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID--KAR 138
+F++FT+RA K + +Q EA+ + V T+HLLLG+I E + + ID K R
Sbjct: 1 MFDKFTQRAQKVIRMAQEEARKMNYPYVATEHLLLGIINEGESVAAKVLENLGIDGQKVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E ++ + +G P A++ F+ KRV E +V+ + G+N++ EH
Sbjct: 61 EKILELV----------GPGEG-PMP--AEIAFTPRAKRVLELSVDEAARFGHNYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL LG D+ + A L G G P SG+
Sbjct: 108 LLLGLIREGEGVAARVLVSLGADLERVRAEITQVLSG-----GPIPG---------TSGQ 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
R L++ DLTA A E +DPV+GRE EI+R+IQ+L RRTKNNP+L+G
Sbjct: 154 AGGQAKKKAVRTPTLDEHGRDLTALARENKLDPVVGREKEIERVIQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAI EGLA RIVQ +VP L+ KR+++LD+ ++AG K RGE E R+ ++ EI
Sbjct: 214 EPGVGKTAIVEGLAQRIVQKKVPEILIDKRVVTLDLASMVAGTKYRGEFEERLKKVLEEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G+VI+FIDE+HTLIG+G +D +N+LKPSL RGE+QC+ +TT DE+R
Sbjct: 274 KNAGNVIVFIDEIHTLIGAGAA-----EGAIDAANILKPSLARGEIQCVGATTLDEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+++ EP+ E+ V IL GLR++YEAHH K T EAI AA LS RYI+
Sbjct: 329 IEKDPALERRFQPIMVDEPTVEETVEILKGLRDRYEAHHRVKITDEAIIAAAKLSDRYIT 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA SR + F + L + ++ +E A E + ++
Sbjct: 389 DRFLPDKAIDLIDEAASRVRLNAFTAPPNLKE--LEEKINEIRKEKEAAVAAQEFEKAAK 446
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
L+ + + S D V DDIA + S W+GIPV+++ +E
Sbjct: 447 LRDQEQKLKAELEEKKKEWEKEQS----DHLLSVTEDDIAQIVSQWTGIPVKKLAEEESE 502
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ LEE L +RVIGQDEAV A++RAV+R+R GLKDP RP + +F GPTGVGKTELA++
Sbjct: 503 RLLKLEEILHQRVIGQDEAVKAVARAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARA 562
Query: 679 LAACYFGS 686
LA FG
Sbjct: 563 LAEALFGD 570
>gi|213965131|ref|ZP_03393329.1| ATPase family associated with various cellular activities (AAA)
protein [Corynebacterium amycolatum SK46]
gi|213952245|gb|EEB63629.1| ATPase family associated with various cellular activities (AAA)
protein [Corynebacterium amycolatum SK46]
Length = 910
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/611 (42%), Positives = 368/611 (60%), Gaps = 37/611 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI+E D LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQDEARELNHNYIGTEHILLGLISEGDGVAAKALESMGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
VV I + + +PF+ K+V E ++ + G+ +I EH
Sbjct: 61 SEVVDIIGRGSQ-------------PPSGHVPFTPRAKKVLEYSLREALQLGHKYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL +LG D+ + + L G E + G E G
Sbjct: 108 LLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSGFQGDE------SDGSPEQRPVGA 161
Query: 259 TAALKSPGRTRASA---LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
T+ + S L+QF +LT A E +DPVIGRE EI+RI+Q+L RRTKNNP+
Sbjct: 162 TSGARVQEGNHQSGSLVLDQFGRNLTVAAREGKLDPVIGREKEIERIMQVLSRRTKNNPV 221
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA+ IV VP L K++ SLD+G L+AG++ RG+ E R+ ++
Sbjct: 222 LIGEPGVGKTAVVEGLALDIVNGRVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKVL 281
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI + GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+
Sbjct: 282 KEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEY 336
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS + + IL G+R+KYEAHH + +A+ AA LS R
Sbjct: 337 RKHIEKDAALERRFQPVNVPEPSVDLTIEILRGVRDKYEAHHRVSISDKALVAAATLSDR 396
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH-EVV 554
YI+DR+LPDKA+DL+DEAG+R I+ + Q I SK D Q+ + E
Sbjct: 397 YINDRFLPDKAVDLIDEAGARMRIKRMTAPADLQE-IDSKIADVRRQKEAAIDEQDFEKA 455
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITA 614
G R D +G+ E A + D A +G + IA V + W+GIPV ++T
Sbjct: 456 AGLR----DKERKLGE--ERREREKKWRAGESDTIAEIGEEQIAEVLASWTGIPVFKLTE 509
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
+E L+ +E++L KR+IGQ+EAV+A+SRA++R+R GLKDP RP+ + +F GP+GVGKTE
Sbjct: 510 EESSRLLRMEDELHKRIIGQEEAVSAVSRAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTE 569
Query: 675 LAKSLAACYFG 685
L+K+LA FG
Sbjct: 570 LSKALAEFLFG 580
>gi|408678941|ref|YP_006878768.1| ATP-dependent Clp protease [Streptomyces venezuelae ATCC 10712]
gi|328883270|emb|CCA56509.1| ATP-dependent Clp protease [Streptomyces venezuelae ATCC 10712]
Length = 840
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/616 (42%), Positives = 370/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEAATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V D IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGDLIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV +SRA++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAVIGLSRAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|336394553|ref|ZP_08575952.1| Clp protease/DnaK/DnaJ chaperone ATP-binding subunit [Lactobacillus
farciminis KCTC 3681]
Length = 833
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/607 (42%), Positives = 357/607 (58%), Gaps = 36/607 (5%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSI 144
FTE A A++ +Q AK+ + V T+H+LLGL E+ G + + R+ I
Sbjct: 5 FTESAKNALVLAQERAKAFHHNAVGTEHILLGLTMENDGIAGITLRDLAVSD-RDVEGEI 63
Query: 145 WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLF 204
H T D A+G +P+S + + AA E S N + EHI L +
Sbjct: 64 EHLTGYGDVSSNTAKG------IYLPYSPKGQLILSAAQEVSDVYKSNRVGTEHILLAIL 117
Query: 205 TVDDGSAGRVLKRLGVDVNHLAAVAVSRL--QGELAKEGREPSLAKGVRENSISGKTAAL 262
D A R+L LG+ + ++ +S++ + A+ G SL S K
Sbjct: 118 DDADNLANRILVNLGLSLAKTKSLLLSKMGMSNKAARRGFAASL-------SDKQKKTQG 170
Query: 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322
++ G+ L+ DLT A + IDPVIGR+ E++R IQIL RRTKNNP+L+GE GV
Sbjct: 171 QAKGKGGTPTLDSLARDLTKMAKDNQIDPVIGRQKEVERTIQILSRRTKNNPVLVGEPGV 230
Query: 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG 382
GKTAIAEGLAI IV+ EVP + +KRIM LDMG L+AG K RGE E R+ +I EI +
Sbjct: 231 GKTAIAEGLAISIVKKEVPFDMQNKRIMMLDMGSLVAGTKYRGEFEDRLKKVIEEIYQDK 290
Query: 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD 442
VILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQ I +TT +E++ EKD
Sbjct: 291 HVILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQLIGATTSNEYQKYIEKD 345
Query: 443 KALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502
AL RRF V + EPS +D+V+IL GLR +YE HH + EA+ AAV LS RY+++R+L
Sbjct: 346 TALERRFAKVYVEEPSAKDSVKILDGLRPRYEQHHGLTISDEAVEAAVRLSTRYLTNRFL 405
Query: 503 PDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYD 562
PDKAIDL+DEA ++ I + + L + D Q ++ + + + L D
Sbjct: 406 PDKAIDLMDEASAKVRIHNVSKNNK-----LEELTD---QSMKLINDKNNAI----LDQD 453
Query: 563 DVVASMGDTSEIVVESSLPSASDDDEPA---VVGPDDIAAVASLWSGIPVQQITADERML 619
A+ E V++ L D + VV DDIA V + W+G+PV+QIT E
Sbjct: 454 FEKAAKIREEEQNVQAQLAKLKDKKSTSKKPVVTADDIAEVIAEWTGVPVKQITRKESEK 513
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ LE++L KRVIGQD A++A+SRA++R+R G+KDPNRP + +F GPTGVGKTELAKS+
Sbjct: 514 LLNLEKELHKRVIGQDTAISAVSRAIRRARSGMKDPNRPIGSFMFLGPTGVGKTELAKSI 573
Query: 680 AACYFGS 686
A FGS
Sbjct: 574 AEVMFGS 580
>gi|441522288|ref|ZP_21003937.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
sihwensis NBRC 108236]
gi|441458115|dbj|GAC61898.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
sihwensis NBRC 108236]
Length = 846
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/612 (42%), Positives = 370/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A +S SG
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNKVRQQVIQLLSG---YQGKEPAEAGTGARSSESGT 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ + L+QF +LT ASE +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 165 PST--------SLVLDQFGRNLTTAASEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVNGNVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+H L+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHQLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE HH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYEQHHKVSITDGALAAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDRIAEARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V A D D A V ++IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVAERAEREKQWRAGDLDVVAEVNDEEIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AVAA+SRA++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVAAVSRAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|379794996|ref|YP_005324994.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus MSHR1132]
gi|356871986|emb|CCE58325.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus MSHR1132]
Length = 818
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/626 (42%), Positives = 361/626 (57%), Gaps = 82/626 (13%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVVEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ N
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMS-----NK 150
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+ T A +P L+ DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 151 NAQATKANNTP------TLDSLARDLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDY 540
RY+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAV-------H 432
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
QE + + +Y++ +T + S + +DIA V
Sbjct: 433 AQEFENAANLRDKQTKLEKQYEEAKNEWKNTQNGMSTS-------------LSEEDIAEV 479
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+GIP+ +I E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP
Sbjct: 480 IAGWTGIPLTKINETESEKLLSLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIG 539
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGS 686
+ +F GPTGVGKTELA++LA FG
Sbjct: 540 SFIFLGPTGVGKTELARALAESMFGD 565
>gi|300780448|ref|ZP_07090304.1| ATP-dependent Clp protease ATP-binding subunit ClpC
[Corynebacterium genitalium ATCC 33030]
gi|300534558|gb|EFK55617.1| ATP-dependent Clp protease ATP-binding subunit ClpC
[Corynebacterium genitalium ATCC 33030]
Length = 967
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/626 (40%), Positives = 370/626 (59%), Gaps = 49/626 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFT+RA + ++ +Q+EA+ L + + T+H+LLGLI E LES GI +D R
Sbjct: 1 MFERFTDRARRVIVLAQQEARDLNHNYIGTEHILLGLIQEGEGVAAKALESMGINLDDVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I + T +PF+ K+V E ++ G+ +I E
Sbjct: 61 REVEEIIGRGSQPHT-------------GHVPFTPRAKKVLELSLREGLQMGHKYIGTEF 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVR------- 251
+ LGL +G A +VL +LG D+ + + L G EG+ P +A+G +
Sbjct: 108 LLLGLIREGEGVAAQVLIKLGADLPRVRQQVIQLLSGYEGGEGQNPEIAEGQQGGPGLTG 167
Query: 252 ------ENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQI 305
G R+ + L+QF +LTA A E +DPV+GR+ EI+RI+Q+
Sbjct: 168 AGAGSGSMGGMGSGRGGNQGERSNSLVLDQFGRNLTAAAKEGKLDPVVGRDKEIERIMQV 227
Query: 306 LCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG 365
L RRTKNNP+L+GE GVGKTA+ EGLA+ I +VP L K++ SLD+G L+AG++ RG
Sbjct: 228 LSRRTKNNPVLIGEPGVGKTAVVEGLALDIANGKVPETLKDKQVYSLDLGSLVAGSRYRG 287
Query: 366 ELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQ 425
+ E R+ ++ EI + GD+ILFIDE+HTL+G+G +G +D ++LLKP L RGELQ
Sbjct: 288 DFEERLKKVLKEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASLLKPKLARGELQ 342
Query: 426 CIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA 485
I +TT DE+R EKD AL RRFQPV + EPS E+ ++IL GLR++YEAHH +T +A
Sbjct: 343 TIGATTLDEYRKHIEKDAALERRFQPVQVDEPSVENTIQILKGLRDRYEAHHRVSYTDDA 402
Query: 486 INAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR 545
+ AA +LS RYI+DR+LPDKA+DL+DEAG+R I+ K + DD E+R
Sbjct: 403 LAAAANLSDRYINDRFLPDKAVDLLDEAGARMRIKRMTAPKGLRDV------DDRITEVR 456
Query: 546 TVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAV 600
+ Q + A + DT + E A + ++ A VG + IA V
Sbjct: 457 REKEAAIDAQDF-----EKAAGLRDTERKLGEERAEKEKQWRAGELEDIAEVGEEQIADV 511
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+GIPV ++T E L+ +E++L +R+IGQD+AV A+SRA++R+R GLKDP RP+
Sbjct: 512 LANWTGIPVFKLTESESSRLLHMEDELHQRIIGQDDAVKAVSRAIRRTRAGLKDPKRPSG 571
Query: 661 AMLFCGPTGVGKTELAKSLAACYFGS 686
+ +F GP+GVGKTEL+K+LA FG
Sbjct: 572 SFIFAGPSGVGKTELSKALAEFLFGD 597
>gi|21221802|ref|NP_627581.1| Clp-family ATP-binding protease [Streptomyces coelicolor A3(2)]
gi|289770914|ref|ZP_06530292.1| Clp-family ATP-binding protease [Streptomyces lividans TK24]
gi|4585605|emb|CAB40873.1| putative Clp-family ATP-binding protease [Streptomyces coelicolor
A3(2)]
gi|289701113|gb|EFD68542.1| Clp-family ATP-binding protease [Streptomyces lividans TK24]
Length = 841
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|443327349|ref|ZP_21055976.1| ATPase with chaperone activity, ATP-binding subunit [Xenococcus sp.
PCC 7305]
gi|442793055|gb|ELS02515.1| ATPase with chaperone activity, ATP-binding subunit [Xenococcus sp.
PCC 7305]
Length = 787
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/608 (42%), Positives = 357/608 (58%), Gaps = 79/608 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+FE F E+A+K V+ +Q EA++ G ++V ++HLLLGLI E G+TI K R
Sbjct: 1 MFEHFNEKAIKTVVLAQEEARNAGYNLVGSEHLLLGLIGEGSSVAAKILANQGLTIQKIR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + + +G FS +PF+ K +FE A +R+ N+I PEH
Sbjct: 61 QVIA------------ETVGKGGGFSPQ-NIPFTPKVKSIFEQAFTEARNLSINYIGPEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I L + ++ D A R+L+ G+++ L + L GE KE S K + K
Sbjct: 108 ILLAITSLTDTLASRLLRDQGINLKTLRTEILKSL-GE--KEAVAASSNKQFNPFGLGDK 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ + + L +F ++LT A E IDP+IGR EI+R +QIL RRTKNNP+L+G
Sbjct: 165 SGS--------KTKLAEFSINLTELAREGKIDPIIGRYPEIERTVQILGRRTKNNPVLVG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV+ EVP + K ++SLDMG L+AG K RG+ E R+ ++ E+
Sbjct: 217 EPGVGKTAIAEGLAQRIVKGEVPDLIRDKEVISLDMGSLLAGTKFRGDFEERLKAIVEEV 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ +G++IL IDE+HTL+G+G +G +NLLKP+L RGELQC+ STT +E+R
Sbjct: 277 KAAGNIILVIDELHTLMGAGAMGGAMD-----AANLLKPALARGELQCLGSTTLNEYRQH 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQ V++ EPS EDA+ I+ GL+ YE +H K+T +AI AAV LS RYIS
Sbjct: 332 IEKDAALERRFQKVMVGEPSVEDAIAIIQGLQSTYENYHQVKYTDQAIKAAVTLSDRYIS 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAGS+ H+ +KK L++P EI +
Sbjct: 392 DRFLPDKAIDLIDEAGSKVHLRYSLKKK------LAEP------EIEPINP--------- 430
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
E+ P +V ++IA + W+G+PV + E
Sbjct: 431 ------------------EALTP---------IVDQEEIAEIVGSWTGVPVTKTDDTEGE 463
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ LE L ++VIGQDEAV A+SRA++RSR G+ DPNRP A+ +F GPTGVGKTELAKS
Sbjct: 464 KLINLEADLHRKVIGQDEAVKAVSRALRRSRSGIGDPNRPIASFIFSGPTGVGKTELAKS 523
Query: 679 LAACYFGS 686
LA FGS
Sbjct: 524 LAITMFGS 531
>gi|403388307|ref|ZP_10930364.1| negative regulator of genetic competence mecB/clpC [Clostridium sp.
JC122]
Length = 809
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/613 (40%), Positives = 362/613 (59%), Gaps = 54/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA ++++ E++ V T+H+LL ++ ED N + I D +
Sbjct: 1 MFNRFTERARNVLMYANDESREFKHGYVGTEHILLAVLKEDDGISKNILNDFNINYDNVK 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + G S ++ + TKR+FE ++ +RS N+I+PEH
Sbjct: 61 NLIEAY------------VGYGNIEMSENEIALTPRTKRLFEISLVEARSLNQNYISPEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ L L +G A ++ LG D L ++GE E++I
Sbjct: 109 MTLALIREGEGVAYTIIVNLGADPLKLYKDIQKAIKGE---------------ESNIKSH 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ K +T L+++ D+T A E +DP+IGR+ E +R+++ILCRR KNNP L+G
Sbjct: 154 SKKSKKDTKT----LDKYGKDITDLAYEGKLDPIIGRDKETERVLEILCRRMKNNPCLIG 209
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTAIAEGLA +I +P L KR++SLDM ++AG+K RGE E R+ +I E+
Sbjct: 210 DPGVGKTAIAEGLAQKIASGNIPEILKEKRVVSLDMSSVLAGSKYRGEFEERLNNIIEEV 269
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
K+G+VILFIDE+HT++G+G G +G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 270 AKAGNVILFIDEIHTIVGAG----GAEG-AIDASNILKPALARGEIQCIGATTLDEYRKY 324
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQ VL+ EP++E+A+ IL GLR+KYEAHH + T EAI AAV LS RYI+
Sbjct: 325 IEKDAALERRFQSVLVDEPTKEEAIEILKGLRDKYEAHHRVQITDEAIEAAVKLSDRYIT 384
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG++ IE K C+ D +++ QA E
Sbjct: 385 DRFLPDKAIDLIDEAGAKMRIENLTTPK----CL-----KDLQEKLE--QATKEKSDAIT 433
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
++ + AS+ D + + E S+ +D ++V +A + S W+ IP++++T
Sbjct: 434 MQDFEKAASLRDKEKSIKEEIEKEEKQWSSKKNDANSIVDASHVANIISRWTNIPIEKLT 493
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L RVIGQDEAV +IS+AV+R+RVGLKDP RP + +F GPTGVGKT
Sbjct: 494 ETEATRLLKLEEILHGRVIGQDEAVESISKAVRRARVGLKDPKRPIGSFIFLGPTGVGKT 553
Query: 674 ELAKSLAACYFGS 686
EL K+LA FG
Sbjct: 554 ELTKALAQAMFGD 566
>gi|378549452|ref|ZP_09824668.1| hypothetical protein CCH26_05167 [Citricoccus sp. CH26A]
Length = 845
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/614 (41%), Positives = 374/614 (60%), Gaps = 47/614 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFT+RA + V+ +Q EA+ L + T+H+LLGLI E G+ KA E+
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHSYIGTEHILLGLIHEG--------EGVAA-KALES 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ SI + + QG+ + + +PF+ K+V E ++ + G+N+I EHI
Sbjct: 52 L-SISLGAVREQVQEIIGQGQQ-TPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A +VL +LG D+N + + L G G +E + +G ++
Sbjct: 110 LGLIREGEGVAAQVLVKLGADLNRVRQTVIQLLSGYQG--------GAGGKETAGAGVSS 161
Query: 261 ALKSPGRTRASA-LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+S G S L+QF +LTA A E +DPVIGR E++R++Q+L RRTKNNP+L+GE
Sbjct: 162 GGQSEGAPAGSVVLDQFGRNLTAAAREGKLDPVIGRAQEMERVMQVLSRRTKNNPVLIGE 221
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTA+ EGLA IV+ +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI+
Sbjct: 222 PGVGKTAVVEGLAQAIVRGDVPETLTDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEIR 281
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 282 TRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKHI 336
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ ++EP+ E+ IL GLR++YEAHH T +A+ AA L+ RY+SD
Sbjct: 337 EKDAALERRFQPIQVNEPTVEETTEILRGLRDRYEAHHRVSITEDALKAAASLADRYVSD 396
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQG 556
R+LPDKAIDL+DEAG+R I KR ++ PP+ +Y I V+A E + G
Sbjct: 397 RFLPDKAIDLIDEAGARLRI---KR--------MTTPPEIKEYDSRIAEVRAEKEAAIDG 445
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ A + D + + + + + A V D IA V S +GIPV +
Sbjct: 446 QDFEG---AAHLRDQEQKLTDERNRKEEEWRTGVTEGIAEVNEDLIAEVLSASTGIPVFK 502
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L +E ++ +RVIGQDEA+ ++S+A++R+R GLKDPNRP+ + +F GPTGVG
Sbjct: 503 LTEEETDRLRNMEAEIHQRVIGQDEAIKSLSQAIRRTRAGLKDPNRPSGSFIFAGPTGVG 562
Query: 672 KTELAKSLAACYFG 685
KTELAK+LA FG
Sbjct: 563 KTELAKALAEFLFG 576
>gi|297181778|gb|ADI17958.1| ATPases with chaperone activity, ATP-binding subunit [uncultured
Chloroflexi bacterium HF0200_09I09]
Length = 836
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/623 (41%), Positives = 366/623 (58%), Gaps = 75/623 (12%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES--GITIDKARE 139
F++FTERA + + +Q EA+ + + T+HLLLGL+ E + S G+ ++K R
Sbjct: 5 FDKFTERARRVLTLAQEEAQRFNHNYIGTEHLLLGLVREGDGVAAKVLSNLGVELNKVRS 64
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
AV I + S++ ++ + KRV E AV+ +R +++I EH+
Sbjct: 65 AVEFIIGRGDR-------------STSGEIGLTPRAKRVIELAVDEARRLNHSYIGTEHL 111
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A VL+ LGV++ R++GE + LA+ +++ +G
Sbjct: 112 LLGLVREGEGIAAGVLESLGVNLE--------RVRGETTR-----ILAQTQPQSAAAGSG 158
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A + R L+Q VDLTA A +DPVIGRETEI+R+IQIL RRTKNNP+L+GE
Sbjct: 159 ARQTA----RTPTLDQLGVDLTAAARSNELDPVIGRETEIERVIQILSRRTKNNPVLIGE 214
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKT+IAEGLA RIVQ ++P LL KR+++LD+G L+AG K RGE E R+ +I EI+
Sbjct: 215 PGVGKTSIAEGLAHRIVQGDIPDTLLGKRMLTLDIGSLVAGTKYRGEFEERLKKVIEEIR 274
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
+ + ILFIDE+H L+G+G +D +N+LKP+L RGELQ I +TT DE+R
Sbjct: 275 SAKNCILFIDELHMLVGAGAA-----EGAVDAANILKPALARGELQAIGATTLDEYRKHI 329
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
E+D AL RRFQPV + EPS E+ + IL G+R YE HHN K EAI AA LS+RY+SD
Sbjct: 330 ERDAALERRFQPVRVDEPSVEETIEILKGVRVAYEEHHNLKIGDEAIKAASELSSRYVSD 389
Query: 500 RYLPDKAIDLVDEAGSRAHI----------------ELFKRKKEQQTCILSKPPDDYWQE 543
R+LPDKAIDL+DEA +R I E +R+K+Q + +Y E
Sbjct: 390 RFLPDKAIDLIDEASARVRIRHQSTPPSLRDATKGLEALRREKDQA---IGNQQYEYAAE 446
Query: 544 IRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
+R + RL+ +E A DD +V +DI V S+
Sbjct: 447 LREREV--------RLQSKLEELEEEVQTE--------RAGDD---LIVSDEDIRDVVSM 487
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIP+ +I ++E L+ +E+ L RVIGQDEA+ +++AV+R+R GLK+P RP A +
Sbjct: 488 WTGIPLTRIASEETARLLEMEQYLDDRVIGQDEAIGVVAKAVRRARAGLKNPKRPIGAFM 547
Query: 664 FCGPTGVGKTELAKSLAACYFGS 686
F GPTGVGKT LA++LA FGS
Sbjct: 548 FLGPTGVGKTYLAETLAEFMFGS 570
>gi|441518183|ref|ZP_20999908.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
hirsuta DSM 44140 = NBRC 16056]
gi|441454872|dbj|GAC57869.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
hirsuta DSM 44140 = NBRC 16056]
Length = 846
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/612 (41%), Positives = 368/612 (60%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP A G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNSVRQQVIQLLSG---YQGKEPETA------GTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P + + L+QF +LTA A+E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 SSDSGTP--STSLVLDQFGRNLTAAAAESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVAGNVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+H L+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHQLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YE HH + A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYEQHHKVSISDGALAAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDRIADARKEKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + ++ A D D A V ++IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLISERTEREKQWRAGDMDVVAEVDDEEIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ++AV A+SRA++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEEELHKRIIGQEDAVKAVSRAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|418476245|ref|ZP_13045570.1| Clp-family ATP-binding protease [Streptomyces coelicoflavus ZG0656]
gi|371543153|gb|EHN71987.1| Clp-family ATP-binding protease [Streptomyces coelicoflavus ZG0656]
Length = 841
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|363419559|ref|ZP_09307659.1| DNA binding ATP-dependent peptidase [Rhodococcus pyridinivorans
AK37]
gi|359737034|gb|EHK85969.1| DNA binding ATP-dependent peptidase [Rhodococcus pyridinivorans
AK37]
Length = 847
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 253/612 (41%), Positives = 370/612 (60%), Gaps = 49/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ + R + +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPAESGTSRGETGTPS 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T+ + L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 165 TSLV----------LDQFGRNLTQAALEGKLDPVIGRAKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQAIVNGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 NSRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T +A+ A+ L+ RYI+
Sbjct: 330 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDKALVASATLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDKIADARREKESAID 438
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V A D D A V + IA V + W+GIPV ++T
Sbjct: 439 AQDFEKAASLRDKEKQLVAQRAEREKQWRAGDLDVIAEVDEEQIAEVLANWTGIPVFKLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+++A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 499 EEETTRLLRMEDELHKRIIGQEDAVKAVAKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 558
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 559 ELSKALANFLFG 570
>gi|302521030|ref|ZP_07273372.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB78]
gi|318061546|ref|ZP_07980267.1| ATP-dependent Clp protease [Streptomyces sp. SA3_actG]
gi|318076619|ref|ZP_07983951.1| ATP-dependent Clp protease [Streptomyces sp. SA3_actF]
gi|333025279|ref|ZP_08453343.1| putative ATP-dependent Clp protease [Streptomyces sp. Tu6071]
gi|302429925|gb|EFL01741.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB78]
gi|332745131|gb|EGJ75572.1| putative ATP-dependent Clp protease [Streptomyces sp. Tu6071]
Length = 841
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 372/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G + G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG--YQTGKETATAGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLEEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSLAHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 434 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDEELIAEVLATATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ++AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQEDAVKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTELAK+LA FG
Sbjct: 554 VGKTELAKTLAEFLFG 569
>gi|403718430|ref|ZP_10943315.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Kineosphaera
limosa NBRC 100340]
gi|403208500|dbj|GAB97998.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Kineosphaera
limosa NBRC 100340]
Length = 864
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/616 (42%), Positives = 377/616 (61%), Gaps = 53/616 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARLLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V D QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQV------------QDIIGQGQQAPSG-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A S+ G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNKVRQQVIQLLSG---YQGKEPAGA------SVGGQ 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ +P + L+QF +LT A E +DPVIGR +EI+R++Q+L RRTKNNPIL+G
Sbjct: 159 SSQEATPAGS--LVLDQFGRNLTQAARENKLDPVIGRTSEIERVMQVLSRRTKNNPILIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K I +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQDIVKGEVPETLKDKHIYTLDLGALVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKH 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EP+ A+ IL GLR++YEAHH T A+ AA +++ RYI+
Sbjct: 332 IEKDPALERRFQPIQVAEPTLSHAIEILKGLRDRYEAHHRVSITDAALVAAANMADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQ 555
DRYLPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E +
Sbjct: 392 DRYLPDKAIDLIDEAGARLRIRR-----------MTAPPDLREFDEKIAHVRREKEAAID 440
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
G + A + D ++E+ + D D A V + IA V + +GIPV
Sbjct: 441 GQDFEK---AAKLRDDERRLIEAKNKREKEWKSGDMDVVAEVDEELIAEVLAASTGIPVF 497
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L+ +E +L KR++G D+A+ A+S+A++R+R GLKDP RP + +F GPTGV
Sbjct: 498 KLTEEESSRLLNMEAELHKRIVGMDDAIKALSQAIRRTRAGLKDPRRPGGSFIFAGPTGV 557
Query: 671 GKTELAKSLAACYFGS 686
GKTELAK+LA FG
Sbjct: 558 GKTELAKTLAEFLFGD 573
>gi|452960301|gb|EME65629.1| DNA binding ATP-dependent peptidase [Rhodococcus ruber BKS 20-38]
Length = 841
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/612 (41%), Positives = 365/612 (59%), Gaps = 49/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE +E ++G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEPQESGTSRG--------- 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ + + L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 ----EAGTPSTSLVLDQFGRNLTQAALEGKLDPVIGRAKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQAIVNGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 NSRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T +A+ AA L+ RYI+
Sbjct: 330 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDKALVAAASLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDKIADARREKESAID 438
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D + +V A D D A V + IA V + W+GIPV ++T
Sbjct: 439 AQDFEKAANLRDKEKQLVAQRAEREKQWRAGDLDVIAEVDEEQIAEVLANWTGIPVFKLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+++A++R+R GLKDP RP + +F GP+GVGKT
Sbjct: 499 EEETTRLLRMEDELHKRIIGQEDAVKAVAKAIRRTRAGLKDPKRPAGSFIFAGPSGVGKT 558
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 559 ELSKALANFLFG 570
>gi|345852637|ref|ZP_08805570.1| ATP-dependent Clp protease [Streptomyces zinciresistens K42]
gi|345635897|gb|EGX57471.1| ATP-dependent Clp protease [Streptomyces zinciresistens K42]
Length = 841
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|451339451|ref|ZP_21909968.1| ATP-dependent Clp protease [Amycolatopsis azurea DSM 43854]
gi|449417946|gb|EMD23570.1| ATP-dependent Clp protease [Amycolatopsis azurea DSM 43854]
Length = 852
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 254/616 (41%), Positives = 375/616 (60%), Gaps = 57/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G +E++ +G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG-----------YQGGKESTETGS 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LT +A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 157 GRGEGTP--SSSLVLDQFGRNLTVQAREGKLDPVIGRGKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQNIVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 275 KTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLEEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ A L+ RYI+
Sbjct: 330 IEKDAALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDGALVQAATLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV-- 554
DR+LPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADVRRDKESAID 438
Query: 555 -----QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ +RL+ D+ +G E D D A V + IA V + W+GIPV
Sbjct: 439 AQDFERAARLR-DEEKTLLGQKGE---REKQWKDGDLDVVAEVDEEQIAEVLANWTGIPV 494
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+G
Sbjct: 495 FKLTEEETTRLLRMEDELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPSG 554
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LAA FG
Sbjct: 555 VGKTELSKALAAFLFG 570
>gi|407277667|ref|ZP_11106137.1| DNA binding ATP-dependent peptidase [Rhodococcus sp. P14]
Length = 841
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/612 (41%), Positives = 365/612 (59%), Gaps = 49/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE +E ++G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEPQESGTSRG--------- 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ + + L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 ----EAGTPSTSLVLDQFGRNLTQAALEGKLDPVIGRAKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQAIVNGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 NSRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T +A+ AA L+ RYI+
Sbjct: 330 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDKALVAAASLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDKIADARREKESAID 438
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D + +V A D D A V + IA V + W+GIPV ++T
Sbjct: 439 AQDFEKAANLRDKEKQLVAQRAEREKQWRAGDLDVIAEVDEEQIAEVLANWTGIPVFKLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+++A++R+R GLKDP RP + +F GP+GVGKT
Sbjct: 499 EEETTRLLRMEDELHKRIIGQEDAVKAVAKAIRRTRAGLKDPKRPAGSFIFAGPSGVGKT 558
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 559 ELSKALANFLFG 570
>gi|295837256|ref|ZP_06824189.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
sp. SPB74]
gi|197699938|gb|EDY46871.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
sp. SPB74]
Length = 841
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 372/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G + G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG--YQTGKETATAGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLEEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSLAHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 434 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDEELIAEVLATATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ++AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQEDAVKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTELAK+LA FG
Sbjct: 554 VGKTELAKTLAEFLFG 569
>gi|29831240|ref|NP_825874.1| ATP-dependent Clp protease [Streptomyces avermitilis MA-4680]
gi|29608355|dbj|BAC72409.1| putative ATP-dependent Clp protease [Streptomyces avermitilis
MA-4680]
Length = 841
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETAAAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|269217199|ref|ZP_06161053.1| negative regulator of genetic competence ClpC/MecB [Slackia exigua
ATCC 700122]
gi|269129336|gb|EEZ60421.1| negative regulator of genetic competence ClpC/MecB [Slackia exigua
ATCC 700122]
Length = 874
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 257/615 (41%), Positives = 378/615 (61%), Gaps = 48/615 (7%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL-----ESGITIDK 136
FE+FT++A +I +Q EA++LG V ++ LLLGLI E P G + GI DK
Sbjct: 12 FEKFTDKARHVLILAQDEARALGAAEVGSEFLLLGLIQE---PEGMAAQALSQVGIVYDK 68
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
AR ++ + DA + + ++ FS + KR+ E A+ + G +I+
Sbjct: 69 AR----AVAARRTEESKKDAVEAPEGQTGKTRLSFSSAAKRILENALREAMQMGQTYIST 124
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EH+ LG+ D A RVL LG++ + AV +L G+ +A G+ S
Sbjct: 125 EHLLLGILREDSCGALRVLSELGIEAD-----AVRSALNDLV--GKPSPVAPGM--PFFS 175
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
G + + +S LE+F DLT +A +DPVIGR EI+R++Q+L RR KNNP+L
Sbjct: 176 G------ADPKGDSSMLEEFGTDLTKKARRGTLDPVIGRSAEIERVLQVLSRRQKNNPLL 229
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+AEGLA I +VP + +KR+++LD+ L+AG+K RGE E R+ ++
Sbjct: 230 IGEPGVGKTAVAEGLAELIAAGQVPDIIRNKRVITLDVSALVAGSKYRGEFEDRLKKVVK 289
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
E+ K+GDVILFIDE+HT+IG+G+ +G+ +D + +LKP L RGE+Q I +TT +E+R
Sbjct: 290 EVIKAGDVILFIDEMHTIIGAGSA----EGS-IDAAAILKPPLSRGEIQVIGATTTEEYR 344
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD ALARRFQ + + EPS+E AVRIL GLR++YEAHH+ ++T EAI +AV +S RY
Sbjct: 345 KHLEKDTALARRFQTITVGEPSEEQAVRILEGLRDRYEAHHHVRYTDEAIQSAVSMSVRY 404
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQ----AMHE 552
I DR+LPDKAID++DEAG+RA I R ++ L DD + +R + A E
Sbjct: 405 IQDRFLPDKAIDVMDEAGARARIR--NRVLPEEVLKL----DDELRRVRNDREDAVAKQE 458
Query: 553 VVQGSRLKYDD-VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ ++L+ ++ V+ + D ++ E + + +G +IA V SL SG+PV
Sbjct: 459 YEKAAKLRDEETVLTAKRDEAQKKAEEEADAIVSE-----IGESEIAEVVSLASGVPVHD 513
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T DE L+ +E L +R+IGQ+EAV A+S+A++RSR GLKDP RP + +F GP+GVG
Sbjct: 514 LTEDEAKKLLRMEGVLHERIIGQEEAVTALSKAIRRSRSGLKDPRRPAGSFIFLGPSGVG 573
Query: 672 KTELAKSLAACYFGS 686
KTEL+K+LA F S
Sbjct: 574 KTELSKALAEFLFSS 588
>gi|453050790|gb|EME98316.1| putative ATP-dependent Clp protease [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 841
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEAATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIADVRREKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKTLAEFLFG 568
>gi|115485055|ref|NP_001067671.1| Os11g0267400 [Oryza sativa Japonica Group]
gi|75269548|sp|Q53LY0.1|CLPC3_ORYSJ RecName: Full=Chaperone protein ClpC3, chloroplastic; AltName:
Full=ATP-dependent Clp protease ATP-binding subunit ClpC
homolog 3; AltName: Full=Casein lytic proteinase C3;
Flags: Precursor
gi|62734176|gb|AAX96285.1| Clp amino terminal domain, putative [Oryza sativa Japonica Group]
gi|77549794|gb|ABA92591.1| ATP-dependent Clp protease ATP-binding subunit clpA
CD4B,chloroplast precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113644893|dbj|BAF28034.1| Os11g0267400 [Oryza sativa Japonica Group]
Length = 932
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 250/613 (40%), Positives = 375/613 (61%), Gaps = 46/613 (7%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
F+ FT++A+KA++ +Q EA+ LG ++ LLLG+I E +GI R A
Sbjct: 99 FDMFTDKAIKAIMMAQEEARRLGHHAAGSEQLLLGVIGEG--------TGIGAKVLRGAG 150
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+S+ + + + A +G P ++ F+ + K V +A+ E + G+N++ EH+ L
Sbjct: 151 LSLKAA--RAEVEKMAGRG-PGMVPMEIKFTPAAKNVLQASQEEAHQLGHNYVGSEHLLL 207
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL + G+A VLK D +++ + + + E +P A ++ G ++
Sbjct: 208 GLLR-EHGAALVVLKNFQADPSNIRSEVIRMISD--TSEDHQPVSA------AVGGGSST 258
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
K P L ++ +LT A E +DPV+GR+ ++ R++QIL RRTKNNP L+GE G
Sbjct: 259 TKIP------TLLEYGTNLTKLAEEGKLDPVVGRQNQVDRVVQILGRRTKNNPCLIGEPG 312
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA RI VP + K +++LDMGLL+AG K RGE E R+ L+ E++++
Sbjct: 313 VGKTAIAEGLAQRIAAGNVPETIDGKTVITLDMGLLVAGTKYRGEFEERLKKLMDEVKQN 372
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G++ILF+DEVHTL+G+G +G +D +N+LKP+L RGELQCI +TT DE+R EK
Sbjct: 373 GEIILFLDEVHTLVGAGAA----EGA-IDAANILKPALARGELQCIGATTIDEYRKHIEK 427
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQPV + EP+ ++ + IL GLRE+YE HH ++T E++ AA LS +YISDR+
Sbjct: 428 DPALERRFQPVKVPEPTVDETIGILKGLRERYEIHHKVQYTDESLIAAARLSYQYISDRF 487
Query: 502 LPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
LPDKAIDLVDEAGS + E + +K+ + + K Q+ A+
Sbjct: 488 LPDKAIDLVDEAGSLVRLRNAQLPDEAKELEKKLKKIMAEKSEAIRSQDFEKAGAL---- 543
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA-VVGPDDIAAVASLWSGIPVQQIT 613
+G ++ + S+ D S+ E S + + P V D+ + S W+G+PV+++T
Sbjct: 544 RGEEVELKSEIMSLVDKSK---EMSKAAVDSGESPGPTVTEADVQHIVSSWTGVPVEKVT 600
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
DE L+ +E L +R++GQDEAV AISRA++R+RVGL+DP RP A+ +F GPTGVGK+
Sbjct: 601 VDESSRLLAMESSLHRRIVGQDEAVTAISRAIRRARVGLRDPRRPIASFIFAGPTGVGKS 660
Query: 674 ELAKSLAACYFGS 686
ELAK+LAA Y+GS
Sbjct: 661 ELAKALAAYYYGS 673
>gi|312194050|ref|YP_004014111.1| ATPase AAA-2 domain-containing protein [Frankia sp. EuI1c]
gi|311225386|gb|ADP78241.1| ATPase AAA-2 domain protein [Frankia sp. EuI1c]
Length = 836
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 261/618 (42%), Positives = 372/618 (60%), Gaps = 60/618 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G K +P+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKG--DPA------------- 152
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
TA S G S L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+
Sbjct: 153 TAGAPSEGTPSTSLVLDQFGRNLTAAAREAKLDPVIGREKEIERVMQVLSRRTKNNPVLI 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 213 GEPGVGKTAVVEGLAQAIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 IRTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYI
Sbjct: 328 HLEKDAALERRFQPIQVAEPSVAHTIEILKGLRDRYEAHHRVSITDAALVAAASLADRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQ 555
SDR+LPDKAIDL+DEAGSR I ++ PPD ++ + I V+ E
Sbjct: 388 SDRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDERIANVRRDKE--- 433
Query: 556 GSRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIP 608
S + D AS+ D + ++ A D D A VG ++IA V ++W+GIP
Sbjct: 434 -SAIDAQDFEKAASLRDKEKNLIADKAKREKEWKAGDMDVVAEVGDEEIAEVLAIWTGIP 492
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T +E L+ +E++L +RVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+
Sbjct: 493 VFKLTEEETARLLRMEDELHRRVIGQQQAIKAVSQAIRRTRAGLKDPKRPGGSFIFAGPS 552
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL+K+LA FG
Sbjct: 553 GVGKTELSKTLAEFLFGD 570
>gi|297563907|ref|YP_003682880.1| ATPase AAA-2 domain-containing protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296848356|gb|ADH70374.1| ATPase AAA-2 domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 836
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 250/614 (40%), Positives = 374/614 (60%), Gaps = 53/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP E++ S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLHG---YQGKEPQATGASSESTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGR+ EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGRDKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +IV+ E+P L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQKIVKGEIPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + A+ IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVDEPTIKHAIEILKGLRDRYEAHHRVSITDSALVAAAQLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKESAID 436
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
++ ++ + D +++ + + A D D A V + IA V + +GIPV ++
Sbjct: 437 AQ-DFEKAASLRDDEKQLLGKKAQREKEWKAGDMDVVAEVDEELIAEVLAASTGIPVFKL 495
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T +E L+ +E++L +RVIGQ++A+ A+S+A++R+R GLKDP RP + +F GP+GVGK
Sbjct: 496 TEEESSRLLRMEDELHRRVIGQEDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGK 555
Query: 673 TELAKSLAACYFGS 686
TEL+K+LA FG
Sbjct: 556 TELSKTLAEFLFGD 569
>gi|163841921|ref|YP_001626326.1| hemolysin [Renibacterium salmoninarum ATCC 33209]
gi|162955397|gb|ABY24912.1| negative regulator of genetic competence [Renibacterium
salmoninarum ATCC 33209]
Length = 830
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/620 (41%), Positives = 369/620 (59%), Gaps = 64/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES I++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGIAAKALESLSISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQEII------------GQGQQAPSG-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D++ + + L G KE + +G +E + +G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLSRVRQQVIQLLSGYQGKETASAGVGQGQQEGTPAGS 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L+QF +LT A + +DPVIGRE E++R++QIL RRTKNNP+L+G
Sbjct: 168 VV------------LDQFGRNLTQDARDNKLDPVIGREHEMERVMQILSRRTKNNPVLIG 215
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA I + +VP + K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 216 EPGVGKTAVVEGLAQAIARGDVPDTIKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 275
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
Q GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 276 QTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKH 330
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T A+ +A L+ RYIS
Sbjct: 331 IEKDAALERRFQPIQVKEPSVSHAIEILKGLRDRYEAHHRVSITDGALTSAATLAERYIS 390
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R I ++ PP+ + EI +V+A E
Sbjct: 391 DRFLPDKAIDLIDEAGARLRIRR-----------MTAPPELKEMDGEIASVKAQKEAA-- 437
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLPSASDDDEPAVVGPDD---------IAAVASLWS 605
+ D A++ DT + ++ +D D G D IA V + +
Sbjct: 438 --IDAQDFEGAAALRDTEQKLITER----ADKDRAWRTGGIDSVTEVDEELIAEVLANST 491
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV ++T +E L+ +E++L KRV+GQDEA+ ++S+A++R+R GLKDP RP + +F
Sbjct: 492 GIPVFKLTEEESGRLLKMEDELHKRVVGQDEAIKSLSQAIRRTRAGLKDPKRPGGSFIFA 551
Query: 666 GPTGVGKTELAKSLAACYFG 685
GPTGVGKTELAK+LA FG
Sbjct: 552 GPTGVGKTELAKALAEFLFG 571
>gi|302535160|ref|ZP_07287502.1| ATP-dependent chaperone ClpB [Streptomyces sp. C]
gi|302444055|gb|EFL15871.1| ATP-dependent chaperone ClpB [Streptomyces sp. C]
Length = 841
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 371/616 (60%), Gaps = 57/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYTGG-GKESATAGGPAEGTPS-- 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 165 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 330 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 390 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAAVRRDKE---- 434
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D+ + ++ + A D D A V + IA V + +GIPV
Sbjct: 435 SAIDSQDFEKAASLRDSEKQLLTAKSKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 494
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 495 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 554
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 555 VGKTELSKTLAEFLFG 570
>gi|398783815|ref|ZP_10547185.1| ATPase AAA [Streptomyces auratus AGR0001]
gi|396995722|gb|EJJ06732.1| ATPase AAA [Streptomyces auratus AGR0001]
Length = 841
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/614 (41%), Positives = 371/614 (60%), Gaps = 55/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEAATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARETKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIADVRREKESAID 436
Query: 557 SRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
S + ++ A + D + ++ + A D D A V + IA V + +GIPV +
Sbjct: 437 S--QDFEMAAGLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDEELIAEVLATATGIPVFK 494
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+GVG
Sbjct: 495 LTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVG 554
Query: 672 KTELAKSLAACYFG 685
KTEL+K+LA FG
Sbjct: 555 KTELSKTLAEFLFG 568
>gi|313139902|ref|ZP_07802095.1| ClpC [Bifidobacterium bifidum NCIMB 41171]
gi|313132412|gb|EFR50029.1| ClpC [Bifidobacterium bifidum NCIMB 41171]
Length = 867
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 254/614 (41%), Positives = 368/614 (59%), Gaps = 45/614 (7%)
Query: 79 SSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDK 136
+S+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+T+D
Sbjct: 8 TSMFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVTLDD 67
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
R+ V + N AA G +PF+ K+V E ++ + G+++I
Sbjct: 68 TRKQVEEMIGKGN------AAPNGH-------IPFTPHAKQVLELSLREALQLGHSYIGT 114
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EHI LGL +G +VL ++ VD+ L + + + G G + KG N+
Sbjct: 115 EHILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIHG---NSGGANASGKGDLANA-- 169
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
G +S +T ++ L+QF +LTA A+E +DPVIGR EI+R++ +L RRTKNNP+L
Sbjct: 170 GGVQDKRS--QTGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVL 227
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++
Sbjct: 228 IGEPGVGKTAVVEGLAQKINAGDVPETLKDKQVYSLDLGSMVAGSRYRGDFEERLKKVLK 287
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 288 EIKTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYR 342
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ +A LS+RY
Sbjct: 343 KYIEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRY 402
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQG 556
I DR LPDKAIDL+DEAG+R I KR L+ PP+ + + + E +
Sbjct: 403 IQDRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDQKVAKVAAEKDKA 451
Query: 557 SRLKYDDVVASMGDTSEIV------VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ + + A + D E + ESS D E VV D IA V S +GIPV
Sbjct: 452 IKDQDFEKAAELRDNQEKLEAERKEKESSWREGESDVE-MVVNEDVIAQVISSTTGIPVF 510
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T E L+G+E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP + +F GPTGV
Sbjct: 511 KLTQAESKKLLGMESELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPAGSFIFAGPTGV 570
Query: 671 GKTELAKSLAACYF 684
GKTELAK+LA F
Sbjct: 571 GKTELAKALAEFLF 584
>gi|257064641|ref|YP_003144313.1| chaperone ATPase [Slackia heliotrinireducens DSM 20476]
gi|256792294|gb|ACV22964.1| ATPase with chaperone activity, ATP-binding subunit [Slackia
heliotrinireducens DSM 20476]
Length = 865
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/611 (41%), Positives = 373/611 (61%), Gaps = 41/611 (6%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKARE 139
E+FTERA + +Q EA+S V +++L+LGL E + G+T DKAR+
Sbjct: 3 LEKFTERARHVLALAQEEARSFDTPCVGSEYLILGLAKETEGMASQALSQVGVTYDKARD 62
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
V + + + D A G + FS KR+ E A+ + G I+ EH+
Sbjct: 63 VVAEMKKGEASDQSADQAESG-----TTHLYFSPRVKRILEQALREALQMGQGLISTEHL 117
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LG+ +G A VLKR+ V+++ L A A++ L G+ PS +G++
Sbjct: 118 LLGVIREGEGGAVDVLKRMDVNLDDLRA-ALNDLVGK-------PSPVASGMPFFGTGES 169
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A +S L++F DLTA+A + L+DPVIGR EI+R++Q+L RR KNNP+L+GE
Sbjct: 170 A-------NESSMLDEFGTDLTAKAKKGLLDPVIGRSAEIERVLQVLSRRQKNNPLLIGE 222
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTA+ EGLA +V +VP + KRI++LD+ L+AG+K RGE E R+ +I E+
Sbjct: 223 PGVGKTAVVEGLAELVVAGQVPDIIADKRIITLDVSALVAGSKYRGEFEERLKKVIKEVI 282
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
KS DVILFIDE+HT+IG+G+ +G+ +D + +LKP L RGE+Q I +TT +E+R
Sbjct: 283 KSKDVILFIDEMHTIIGAGSA----EGS-IDAAAILKPPLSRGEIQVIGATTIEEYRKHL 337
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQ V+++EP++E +RIL GLR++YEAHH+ FT EA++AAV +S RY+ D
Sbjct: 338 EKDSALERRFQTVMVNEPTEEQTIRILEGLRDRYEAHHHVHFTDEALHAAVTMSMRYVQD 397
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR----TVQAMHEVVQ 555
R+LPDKAID++DEAG+RA I E + DD +++R + + E +
Sbjct: 398 RFLPDKAIDVLDEAGARARIRNRTLPDEVREL------DDEIRKVRNDRESAVSKQEYEE 451
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+RL+ D + + E V++ + A D VG DIA + S+ +G+PV +T
Sbjct: 452 AARLR--DKEKELQEKREEVMKKAAEEA--DRTITEVGEKDIADIISMSTGVPVSNLTEA 507
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +EE L +R+IGQDEAV A+S+A++RSR GLKDP RP + +F GP+GVGKTEL
Sbjct: 508 ETSKLLRMEEVLHERIIGQDEAVTALSKAIRRSRSGLKDPRRPAGSFIFLGPSGVGKTEL 567
Query: 676 AKSLAACYFGS 686
+K+LA F S
Sbjct: 568 SKALAEFLFNS 578
>gi|441154708|ref|ZP_20966583.1| ATPase AAA [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440618124|gb|ELQ81204.1| ATPase AAA [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 839
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/614 (41%), Positives = 371/614 (60%), Gaps = 55/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEAATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARETKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAAQLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIADVRREKESAID 436
Query: 557 SRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
S + ++ A + D + ++ + A D D A V + IA V + +GIPV +
Sbjct: 437 S--QDFEMAAGLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPVFK 494
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+GVG
Sbjct: 495 LTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVG 554
Query: 672 KTELAKSLAACYFG 685
KTEL+K+LA FG
Sbjct: 555 KTELSKTLAEFLFG 568
>gi|297201430|ref|ZP_06918827.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
gi|197713837|gb|EDY57871.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
Length = 841
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|297192907|ref|ZP_06910305.1| ATP-dependent Clp protease [Streptomyces pristinaespiralis ATCC
25486]
gi|197722625|gb|EDY66533.1| ATP-dependent Clp protease [Streptomyces pristinaespiralis ATCC
25486]
Length = 841
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEAATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKTLAEFLFG 568
>gi|403225132|gb|AFR24744.1| ATP-dependent clp protease ATP-binding subunit [uncultured
Pelagomonas]
Length = 833
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 254/617 (41%), Positives = 377/617 (61%), Gaps = 56/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES------GITI 134
+FERFTE+A+K V+ SQ E++ LG + V T+ +LLGL+ E NG + G+T+
Sbjct: 1 MFERFTEKAIKVVMLSQEESRRLGHNFVGTEQILLGLVGE----NGGVAYKVLRTFGVTL 56
Query: 135 DKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
+AR V I +G F A ++PF+ KRV E A+E +R G+ +I
Sbjct: 57 REARTEVERII------------GRGSGFV-AVEIPFTPRAKRVLEIAIEEARDLGHGYI 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI L L + G RVL++LG+ +S+++ EL + + + + +
Sbjct: 104 GTEHILLALLEEEVGVGVRVLQQLGL--------VISQIRTELLIQ-----IGENIEAVA 150
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
K+ G A+E+F +LT A +DPV+GR+ EI R+IQIL RR KNNP
Sbjct: 151 PGDKSDQFDMGG----LAIEEFTTNLTETAYNGNLDPVVGRDDEISRVIQILARRRKNNP 206
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+AEGLA RIV+ +VP L K+++SLD+GLL+AG K RGE E R+ +
Sbjct: 207 VLIGEPGVGKTAVAEGLAQRIVERDVPALLDDKQVISLDVGLLLAGTKYRGEFEERLKRI 266
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI+ S ++IL IDEVHTLIG+G +G +D +N+LKP+L RGELQC+ +TT +E
Sbjct: 267 VDEIRSSENIILVIDEVHTLIGAGAA----EG-AVDAANILKPALARGELQCLGATTVEE 321
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R E+D AL RRFQPV + EPS +D V IL LR +YE HH K +A+ AA + A
Sbjct: 322 YRKHIERDSALERRFQPVQVPEPSVDDTVDILRCLRARYERHHGLKIGDDALEAASRMGA 381
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
+YI+DR+LPDKAIDL+DEA +R + L + L + D +E T +
Sbjct: 382 QYIADRFLPDKAIDLIDEACAR--VRLRATRTPDSATGLKRELRDVMKEKETAIREQDFE 439
Query: 555 QGSRL--KYDDVVASMGDTSEIVVESSLPSASDDDEP---AVVGPDDIAAVASLWSGIPV 609
+ + + + ++ A + I++ + +S + P ++V DDIA V + W+GIPV
Sbjct: 440 RAADILDREIEIRAQLN----IILSTVKRVSSSKETPTYESIVCEDDIAHVVAAWTGIPV 495
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+++ E L+ +E+ L R+IGQ++AV+A+S+A++R+RVGL++PNRP A+ LF GPTG
Sbjct: 496 NKLSKTESEKLLVMEDTLHSRIIGQEQAVSAVSKAIRRARVGLRNPNRPIASFLFSGPTG 555
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL K+LA +FG+
Sbjct: 556 VGKTELTKALALFFFGA 572
>gi|374988711|ref|YP_004964206.1| putative ATP-dependent Clp protease [Streptomyces bingchenggensis
BCW-1]
gi|297159363|gb|ADI09075.1| putative ATP-dependent Clp protease [Streptomyces bingchenggensis
BCW-1]
Length = 841
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/614 (41%), Positives = 371/614 (60%), Gaps = 55/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEAATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIADVRREKESAID 436
Query: 557 SRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
S + ++ A + D + ++ + A D D A V + IA V + +GIPV +
Sbjct: 437 S--QDFEMAAGLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDEELIAEVLATATGIPVFK 494
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+GVG
Sbjct: 495 LTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVG 554
Query: 672 KTELAKSLAACYFG 685
KTEL+K+LA FG
Sbjct: 555 KTELSKTLAEFLFG 568
>gi|330470478|ref|YP_004408221.1| ATPase aaa-2 domain-containing protein [Verrucosispora maris
AB-18-032]
gi|328813449|gb|AEB47621.1| atpase aaa-2 domain protein [Verrucosispora maris AB-18-032]
Length = 846
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/620 (41%), Positives = 373/620 (60%), Gaps = 64/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPA------------- 151
Query: 259 TAALKSPGRTRASA---LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
AA +PG S L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+
Sbjct: 152 -AAGTAPGEAAPSTSLVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPV 210
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGL+ +I++ EVP L K++ +LD+G L+AG++ RG+ E R+ ++
Sbjct: 211 LIGEPGVGKTAVVEGLSQKIIKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVL 270
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+
Sbjct: 271 KEIRTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEY 325
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EPS + IL GLR++YEAHH T A+ AA L+ R
Sbjct: 326 RKHLEKDAALERRFQPIQVGEPSLAHTIEILKGLRDRYEAHHRVSITDAALVAAATLADR 385
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEV 553
YISDR+LPDKAIDL+DEAG+R I ++ PPD D+ + I V+ E
Sbjct: 386 YISDRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLRDFDERIAQVRRDKE- 433
Query: 554 VQGSRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSG 606
S + D A + D + ++ A D D + V + IA V W+G
Sbjct: 434 ---SAIDAQDFERAAQLRDKEKQLLGQKAQREKEWKAGDLDVVSEVDDEQIAEVLGNWTG 490
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T +E L+ +E++L KRVIGQ++AV A+S+A++R+R GLKDP RP+ + +F G
Sbjct: 491 IPVYKLTEEETSRLLRMEDELHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAG 550
Query: 667 PTGVGKTELAKSLAACYFGS 686
P+GVGKTEL+K+LA FGS
Sbjct: 551 PSGVGKTELSKALAEFLFGS 570
>gi|311743343|ref|ZP_07717150.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Aeromicrobium
marinum DSM 15272]
gi|311313411|gb|EFQ83321.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Aeromicrobium
marinum DSM 15272]
Length = 837
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/614 (41%), Positives = 372/614 (60%), Gaps = 53/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E G+ KA E+
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLSHNYIGTEHILLGLIHEG--------EGVAA-KALES 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + Q +D QG+ + + +PF+ K+V E ++ + G+N+I EHI
Sbjct: 52 LDISLEAVRAQ-VEDIIGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A +VL +LG D+N + + +QG +G+E A +N+ +
Sbjct: 110 LGLIREGEGVAAQVLVKLGADLNRVRQQVIQLVQG---FQGKEAEAAGAPADNAPA---- 162
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
++ L+QF +LT A E +DPVIGRE +I+R++Q+L RRTKNNP+L+GE
Sbjct: 163 --------TSAVLDQFGRNLTQAAREGKLDPVIGRENQIERVMQVLSRRTKNNPVLIGEP 214
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKT + EGLA IV+ +VP L K+I +LD+G L+AG++ RG+ E R+ ++ EI+
Sbjct: 215 GVGKTTVVEGLAQDIVRGDVPETLKDKQIYTLDLGALVAGSRYRGDFEERLKKVLKEIRT 274
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE R FE
Sbjct: 275 RGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEFRKHFE 329
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS + +L GLR++YEAHH T EA+ AA L+ RY+SDR
Sbjct: 330 KDAALERRFQPIQVPEPSVAHTIEMLKGLRDRYEAHHRVTITDEALVAAATLADRYVSDR 389
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQGSR 558
+LPDKAIDLVDEAGSR I ++ PPD ++ ++I V+ E G+
Sbjct: 390 FLPDKAIDLVDEAGSRLRIRR-----------MTAPPDLKEFDEKISDVRRRKE---GAI 435
Query: 559 LKYD-DVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
D + ASM D + ++ + A D D AVV + IA V +L +GIP+ ++
Sbjct: 436 DAQDFEAAASMRDEEKKLIAAKNERERQWKAGDMDVVAVVDEELIAEVLALATGIPIVKL 495
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+ +E L+ +E +L KRVIGQ EA+ A+SRA++R+R GLKDP RP + +F GP+GVGK
Sbjct: 496 SEEESSRLLNMEAELGKRVIGQHEAIKALSRAIRRTRAGLKDPKRPGGSFIFAGPSGVGK 555
Query: 673 TELAKSLAACYFGS 686
T L+K+LA FG
Sbjct: 556 TWLSKTLANFLFGD 569
>gi|163791642|ref|ZP_02186039.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Carnobacterium sp. AT7]
gi|159873091|gb|EDP67198.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Carnobacterium sp. AT7]
Length = 830
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/627 (41%), Positives = 361/627 (57%), Gaps = 41/627 (6%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVV 142
E F+E+A +I +Q EAK V T+H+LLGLI E + GI R+ V
Sbjct: 3 ELFSEKARMVLIMAQEEAKGFRHHSVGTEHILLGLIME--------QEGIAGKTLRQFSV 54
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
+ + K S A +P+S K+ A + +R G F+ EH+ LG
Sbjct: 55 TEMDVREEIEHFTGYGTMKYLSKNAILPYSPRAKQAITFATDEARRMGSVFVGTEHLLLG 114
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
L +D + ++L L +D+N + + ++ G+ G+ A
Sbjct: 115 LLREEDILSSKILSNLDIDLNKARQIVLKKIGLSDITNGK--------------GRKAKP 160
Query: 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322
S L+ DLT+ A E+ +DPV+GR EIQRIIQ+L RRTKNNP+L+GE GV
Sbjct: 161 ASKQVIGTPTLDSLARDLTSVAREKKLDPVVGRHKEIQRIIQVLSRRTKNNPVLVGEPGV 220
Query: 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG 382
GKTAIAEGLA +I+ EVP L +KR+M LDMG L+AG K RGE E R+ +I EI + G
Sbjct: 221 GKTAIAEGLAQKIIDGEVPTALANKRLMMLDMGSLVAGTKYRGEFEERMKKIIDEIYQDG 280
Query: 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD 442
+VILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQ I +TT DE++ EKD
Sbjct: 281 EVILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQTIGATTLDEYQKYIEKD 335
Query: 443 KALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502
AL RRF P+ + PS+E+ ILLGLR +YE HH K T EA++AAV LS+RYI+ R L
Sbjct: 336 AALERRFSPIHVDPPSEEETEEILLGLRSRYEEHHGVKITDEAVHAAVKLSSRYITSRQL 395
Query: 503 PDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYD 562
PDKAIDL+DE+ S+ +++ + I +D Q + + +R++
Sbjct: 396 PDKAIDLIDESASKVRLDVSSKPSPVAAAIAE--LEDLIQSKEEAIQSQDFEKAARIR-- 451
Query: 563 DVVASMGDTSEI--VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLL 620
+ M +I +++ AS + V DIA V SLW+ IPVQQ+ E L
Sbjct: 452 --IKEMKQRKKIENLLQKKEGKASSN--SLQVTERDIAEVVSLWTSIPVQQMEQKESDRL 507
Query: 621 VGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
+ LE+ L KRVIGQ++AV ++SRA++RSR GLKDPNRP + +F GPTGVGKTELAK+LA
Sbjct: 508 MNLEKILHKRVIGQEQAVGSVSRAIRRSRSGLKDPNRPIGSFMFLGPTGVGKTELAKALA 567
Query: 681 ACYFGS----VRIHYLFFPSPFNSVKV 703
FG+ VR+ F +++ ++
Sbjct: 568 EAMFGNEEALVRVDMSEFMEKYSTSRL 594
>gi|403737328|ref|ZP_10950162.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Austwickia
chelonae NBRC 105200]
gi|403192628|dbj|GAB76932.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Austwickia
chelonae NBRC 105200]
Length = 870
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/616 (41%), Positives = 368/616 (59%), Gaps = 53/616 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I T Q + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQEII-GTGTQ------------APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D++ + + L G KE + A GV S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLSRVRQTVIQLLSGYQGKE----TAAAGVGGQSTQEG 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T A + L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNPIL+G
Sbjct: 164 TPA-------GSLVLDQFGRNLTQAAREGKLDPVIGRSKEIERVMQVLSRRTKNNPILIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K I +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQDIVKGEVPETLKDKHIYTLDLGALVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EP+ + IL GLR++YEAHH T A+ AA +L+ RYI+
Sbjct: 332 IEKDPALERRFQPIQVAEPTLPHTIEILKGLRDRYEAHHRVSITDSALIAAANLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQ 555
DRYLPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E +
Sbjct: 392 DRYLPDKAIDLIDEAGARLRIRR-----------MTAPPDLREFDEKIAHVRREKEAAID 440
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
G + A + D + ++++ + D D A V + IA V + +GIPV
Sbjct: 441 GQDFEK---AAKLRDDEKQLIDAKAKREKEWKSGDMDVVAEVDEELIAEVLAASTGIPVF 497
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L+ +E +L KR++G D+A+ A+S++++R+R GLKDP RP + +F GPTGV
Sbjct: 498 KLTEEESTRLLNMEAELHKRIVGMDDAIKALSQSIRRTRAGLKDPRRPGGSFIFAGPTGV 557
Query: 671 GKTELAKSLAACYFGS 686
GKTELAK+LA FG
Sbjct: 558 GKTELAKALAEFLFGD 573
>gi|317123126|ref|YP_004103129.1| ATPase AAA [Thermaerobacter marianensis DSM 12885]
gi|315593106|gb|ADU52402.1| ATPase AAA-2 domain protein [Thermaerobacter marianensis DSM 12885]
Length = 839
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/618 (42%), Positives = 375/618 (60%), Gaps = 63/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R++ERA + ++ +Q EA+ L + V T+HLLLGLI R G L+S GI ++
Sbjct: 1 MFGRYSERAQRVILLAQEEARRLNYNYVGTEHLLLGLI---REGTGIAAKALQSLGINLE 57
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGK-PFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
+ R V I N QG+ ++ AK K V E A E +R G+N++
Sbjct: 58 QVRAEVEKIIGRGN------GPIQGEIGYTPRAK-------KVVMELAPEEARLLGHNYV 104
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL +G A +VL+ +G D++ + + L G +
Sbjct: 105 GTEHILLGLIREGEGVAAKVLENMGADLDRVRQTVIKLLGG------------------T 146
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+ AA + ++ L+ F DLT A E +DPVIGR+ EI+R+IQIL RRTKNNP
Sbjct: 147 AAPAPAARQRRQKSTTPVLDNFGRDLTQMAEEGKLDPVIGRDKEIERVIQILSRRTKNNP 206
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAI EGLA RI + +VP L +R++SLD+G L+AG+K RGE E R+ +
Sbjct: 207 VLIGEPGVGKTAIVEGLAQRIAEGKVPEILKDRRVVSLDLGALVAGSKYRGEFEERLKKV 266
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI+++G++ILFIDE+HT+IG+G +D +++LKP+L RGELQ I +TT DE
Sbjct: 267 MDEIRRAGNIILFIDEMHTIIGAGAA-----EGAIDAASILKPALARGELQTIGATTLDE 321
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+++ EPS EDA++IL GLR++YEAHH + T +AI AAV L+
Sbjct: 322 YRKHVEKDAALERRFQPIMVEEPSVEDAIQILRGLRDRYEAHHRVEITDDAIVAAVKLAD 381
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYISDR+LPDKAIDL+DEA SRA ++ F PP+ E R + E
Sbjct: 382 RYISDRFLPDKAIDLIDEAASRARLQAF-----------VAPPELKEIEQRLEEIRKEKE 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIP 608
+ + + A++ D + +VE L ++ +E VV DDIA + S W+GIP
Sbjct: 431 AAVQSQEFEKAANLRDQEQKLVE-ELERKKNEWQQQQLNEKIVVTADDIAQIVSNWTGIP 489
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V+++ E L+ LEE L +R++GQD+AV A++RA++R+R GLKDP RP + +F GPT
Sbjct: 490 VRRLEQAESERLLKLEEILHERIVGQDDAVKAVARAIRRARAGLKDPRRPIGSFIFLGPT 549
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAK+LA FG
Sbjct: 550 GVGKTELAKALAEALFGD 567
>gi|345016096|ref|YP_004818450.1| ATPase AAA [Streptomyces violaceusniger Tu 4113]
gi|344042445|gb|AEM88170.1| ATPase AAA-2 domain protein [Streptomyces violaceusniger Tu 4113]
Length = 841
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 256/614 (41%), Positives = 371/614 (60%), Gaps = 55/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEAATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIADVRREKESAID 436
Query: 557 SRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
S + ++ A + D + ++ + A D D A V + IA V + +GIPV +
Sbjct: 437 S--QDFEMAAGLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDEELIAEVLATATGIPVFK 494
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+GVG
Sbjct: 495 LTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVG 554
Query: 672 KTELAKSLAACYFG 685
KTEL+K+LA FG
Sbjct: 555 KTELSKTLAEFLFG 568
>gi|357420234|ref|YP_004933226.1| ATPase AAA [Thermovirga lienii DSM 17291]
gi|355397700|gb|AER67129.1| ATPase AAA-2 domain protein [Thermovirga lienii DSM 17291]
Length = 820
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 249/614 (40%), Positives = 373/614 (60%), Gaps = 47/614 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+++ FTER + + + +EA +G D++ T+H+LLGL+AE + G+ +D R
Sbjct: 1 MWQFFTERGKRVIQLAHKEALKMGHDVIGTEHILLGLLAEGEGIAARVLMSFGVELDDVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + +G+P + +P S KRV + A+ +R+ G N++ EH
Sbjct: 61 TRI------------EQVVGRGEPKAKPIDLPLSPRAKRVLDLAMREARNMGVNYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL + +G A ++L+ LG+D+ + A + L ++ +G G
Sbjct: 109 MLLGLISEGEGIASQILQSLGLDLQKVRAEVKTVL----------TNVEQGEEGEYREGG 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
K GR+R L+Q +DLT A +DPV+GR EIQR+IQIL RR KNNP+L+G
Sbjct: 159 ELQQKGAGRSRTPTLDQLGIDLTEMAQRGELDPVVGRTKEIQRLIQILSRRKKNNPVLIG 218
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTAI EGLA +++ +VP L KR++ L++G L+AG K RGE E R+ L+ E+
Sbjct: 219 DPGVGKTAIVEGLAQKVISGDVPEVLKGKRVVQLNVGNLVAGTKYRGEFEERMRKLVKEL 278
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
++S DV+LFIDE+HT++G+G G +G +D +N+LKPSL RGE Q I +TT DE+R
Sbjct: 279 RESKDVVLFIDEIHTIVGAG----GAEGA-VDAANILKPSLARGEFQVIGATTLDEYRKH 333
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS ED+++IL GLR++YEAHH K T EA+ AA LS RYI+
Sbjct: 334 IEKDPALERRFQPVQVDEPSVEDSIKILEGLRDRYEAHHRAKITDEALVAAAKLSERYIT 393
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
+R+LPDKAIDL+DEA +RA + + P+D Q R ++A+ + + +
Sbjct: 394 ERFLPDKAIDLIDEAAARARLNTM------------ELPEDIKQLERELEALRKEKEAAV 441
Query: 559 LKYD-DVVASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + A + D + +I ++ ++E VV + IA + S W+GIPVQQ+
Sbjct: 442 ASQEFEKAAHIRDRERQLSKQIEIKRQEWQVKRNNEEPVVDEEQIAQIVSEWTGIPVQQL 501
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T +E L+ +EE++ KR++ Q +AV A++RA++R+R GLKDP RP + LF GPTGVGK
Sbjct: 502 TEEESARLLRMEEEIHKRMVNQCDAVNAVARAIRRARSGLKDPKRPIGSFLFLGPTGVGK 561
Query: 673 TELAKSLAACYFGS 686
TELA+SLA FGS
Sbjct: 562 TELARSLAEFLFGS 575
>gi|260893780|ref|YP_003239877.1| ATPase AAA-2 domain-containing protein [Ammonifex degensii KC4]
gi|260865921|gb|ACX53027.1| ATPase AAA-2 domain protein [Ammonifex degensii KC4]
Length = 812
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/618 (42%), Positives = 363/618 (58%), Gaps = 65/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+F RFT RA K ++ +Q EA+ + V T+H+LLGL+ E GI+ D R
Sbjct: 1 MFGRFTRRAQKVLLLAQEEARRMNYPFVGTEHILLGLLREGEGVAAKVLQNLGISADAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I ++ + KRV E AV+ +R G+N++ EH
Sbjct: 61 EKVEQIVERGEE-------------PVLHEVTLTPRAKRVLELAVDEARQLGHNYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL G D++ + A + L S
Sbjct: 108 LLLGLIREGEGVAAQVLTMFGADLDKVRAQVLEML--------------------STGTP 147
Query: 259 TAALKSP-GRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
AA P GR++ L+QF DLT A E+ +DPV+GRE EI+R+IQIL RRTKNNP+L+
Sbjct: 148 GAAQAGPAGRSKTPLLDQFGRDLTRLAREDRLDPVVGREKEIERVIQILSRRTKNNPVLI 207
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
G+ GVGKTAI EGLA RI + +VP LL+KR+++LD+ ++AG K RGE E R+ ++ E
Sbjct: 208 GDPGVGKTAIVEGLAQRIAKGQVPEVLLNKRVVALDLASVVAGTKYRGEFEERLKKIVDE 267
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ +G+VILFIDE+HT++G+G +D +N+LKP L RGELQ I +TT DE+R
Sbjct: 268 IKAAGNVILFIDELHTIVGAGAA-----EGAIDAANILKPVLARGELQTIGATTLDEYRK 322
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQPV++ EP+ E+ + IL GLR++YEAHH + T EAI AA LS RYI
Sbjct: 323 HIERDPALERRFQPVMVGEPTVEETIAILKGLRDRYEAHHRVRITDEAIEAAAKLSHRYI 382
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD-----DYWQEIRTVQ---- 548
+DR+LPDKAIDL+DEA SR + F + PPD +EIR +
Sbjct: 383 TDRFLPDKAIDLIDEAASRVRLRAF-----------TPPPDLKELEQKLEEIRKEKEAAV 431
Query: 549 AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
A E + ++L+ D A + E E+ SD + VV +D+A V S W+GIP
Sbjct: 432 AAQEFEKAAQLR--DQEAKIKAEIEAAREAWRQKQSDGE--LVVTAEDVAEVVSSWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V+Q+ +E L+ LEE L +R++GQDEAVAA++RAV+R+R GLKDP RP +F GPT
Sbjct: 488 VKQLKMEEAERLLKLEEILHQRIVGQDEAVAAVARAVRRARAGLKDPRRPIGVFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTELAK+LA FG
Sbjct: 548 GVGKTELAKALAEALFGD 565
>gi|456391789|gb|EMF57147.1| Clp family ATP-binding protease [Streptomyces bottropensis ATCC
25435]
Length = 841
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|242372741|ref|ZP_04818315.1| ClpB ATPase [Staphylococcus epidermidis M23864:W1]
gi|242349514|gb|EES41115.1| ClpB ATPase [Staphylococcus epidermidis M23864:W1]
Length = 818
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/617 (41%), Positives = 355/617 (57%), Gaps = 66/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQEQMGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V L P ++ + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGS--------PEMSNKNAQANK 156
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S T L S R DLT A + +DPV+GR EI R+I++L RRTKNNP+
Sbjct: 157 SNNTPTLDSLAR-----------DLTVIAKDGTLDPVVGRNKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKEKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ED + IL GLR++YEAHH + EA+ AA LS R
Sbjct: 321 RKNIEKDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSNR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIE-------LFKRKKEQQTCILSKPPDDYWQEIRTVQ 548
Y+SDR+LPDKAIDL+DEA S+ ++ L + ++E + K + QE
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIENVKNEKDAAVHAQEFENAA 440
Query: 549 AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ + +Y+D + S+ V +SL +DIA V + W+GIP
Sbjct: 441 NLRDKQSKLEKQYED-AKNEWKNSQGGVSTSLSE------------EDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L +RVIGQ++AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESERLLNLEDTLHERVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTELA++LA FG
Sbjct: 548 GVGKTELARALAESMFG 564
>gi|326383982|ref|ZP_08205665.1| ATPase AAA-2 domain-containing protein [Gordonia neofelifaecis NRRL
B-59395]
gi|326197142|gb|EGD54333.1| ATPase AAA-2 domain-containing protein [Gordonia neofelifaecis NRRL
B-59395]
Length = 846
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/613 (42%), Positives = 368/613 (60%), Gaps = 49/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLA-KGVRENSISG 257
I LGL +G A +VL +LG D+N + + L G +G+EP+ A G R +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNKVRQQVIQLLSG---YQGKEPAEAGTGARSSEAGT 164
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ +L L+QF +LT ASE +DPVIGRE EI+R++Q+L RRTKNNP+L+
Sbjct: 165 PSTSL---------VLDQFGRNLTTAASEGKLDPVIGREKEIERVMQVLSRRTKNNPVLI 215
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV VP L K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 216 GEPGVGKTAVVEGLAQAIVNGNVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKE 275
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I GD+ILFIDE+H L+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 276 INTRGDIILFIDELHQLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRK 330
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EPS E + IL GLR++YE HH T A+ AA L+ RYI
Sbjct: 331 YIEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYEQHHKVSITDGALAAAATLADRYI 390
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 391 NDRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDRIADARKEKESAI 439
Query: 558 RLKYDDVVASMGDTSEIVV-----ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + AS+ D + +V A D D A V ++IA V W+GIPV ++
Sbjct: 440 DAQDFEKAASLRDKEKQLVGERAEREKQWRAGDLDVVAEVNDEEIAEVLGNWTGIPVFKL 499
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T +E L+ +E++L KR+IGQ +AVAA+SRA++R+R GLKDP RP+ + +F GP+GVGK
Sbjct: 500 TEEETTRLLRMEDELHKRIIGQQDAVAAVSRAIRRTRAGLKDPKRPSGSFIFAGPSGVGK 559
Query: 673 TELAKSLAACYFG 685
TEL+K+LA FG
Sbjct: 560 TELSKALANFLFG 572
>gi|376257826|ref|YP_005145717.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae VA01]
gi|372120343|gb|AEX84077.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae VA01]
Length = 878
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/625 (41%), Positives = 368/625 (58%), Gaps = 58/625 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + A +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPAGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
+ LGL DG A +VL +LG D+ + + L G EG E EN+ G
Sbjct: 107 FLLLGLIREGDGVAAQVLVKLGADLPRVRQQVIQLLSG---YEGGESP------ENNNEG 157
Query: 258 KTAALKSPG-----------RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQIL 306
+ + R+ + L+QF +LT A E +DPV+GRE EI+RI+Q+L
Sbjct: 158 EAVGAGTGVGRAGRGGGAGERSNSLVLDQFGRNLTQAAKEGKLDPVVGREQEIERIMQVL 217
Query: 307 CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366
RRTKNNP+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+
Sbjct: 218 SRRTKNNPVLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQVYSLDLGSLVAGSRYRGD 277
Query: 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQC 426
E R+ ++ EI + GD+ILFIDE+HTL+G+G +G +D ++LLKP L RGELQ
Sbjct: 278 FEERLKKVLKEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASLLKPKLARGELQT 332
Query: 427 IASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAI 486
I +TT DE+R EKD AL RRFQPV + EPS + + IL GLR++YEAHH T A+
Sbjct: 333 IGATTLDEYRKHIEKDAALERRFQPVQVPEPSVDMTIEILKGLRDRYEAHHRVSITDGAL 392
Query: 487 NAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRT 546
AA LS RYI+DR+LPDKA+DL+DEAG+R I KR ++ + DD E+R
Sbjct: 393 AAAAQLSDRYINDRFLPDKAVDLIDEAGARMCI---KRMTAPESI---RKVDDQIAEVRR 446
Query: 547 VQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVA 601
+ Q + A + DT + E + D ++ A VG + IA V
Sbjct: 447 EKEAAIDAQDF-----EKAAGLRDTERKLGEERAEKEKQWRSGDLEDIAEVGEEQIAEVL 501
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
W+GIPV ++T +E L+ +EE+L KR+IGQD+AV ++SRA++R+R GLKDP RP+ +
Sbjct: 502 GNWTGIPVFKLTEEESSRLLHMEEELHKRIIGQDDAVKSVSRAIRRTRAGLKDPRRPSGS 561
Query: 662 MLFCGPTGVGKTELAKSLAACYFGS 686
+F GP+GVGKTEL+KSLA FG
Sbjct: 562 FIFAGPSGVGKTELSKSLANFLFGD 586
>gi|238019160|ref|ZP_04599586.1| hypothetical protein VEIDISOL_01023 [Veillonella dispar ATCC 17748]
gi|237863859|gb|EEP65149.1| hypothetical protein VEIDISOL_01023 [Veillonella dispar ATCC 17748]
Length = 815
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/623 (42%), Positives = 366/623 (58%), Gaps = 77/623 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-----FLESGITID 135
+ +RFT+ A + + F+Q A LG D V T+H+L+GL + NG E GI +
Sbjct: 1 MMQRFTDDAQRVLSFAQEAALELGHDYVGTEHVLIGLT---KVKNGVAAKALEELGIVTE 57
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
EAV G+ A + + K V E AV+ + +N++
Sbjct: 58 DIFEAV--------------EEQVGRGNKKATSIYMTPRVKHVLELAVQVANRMNHNYVG 103
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAK--EGREPSLAKGVREN 253
EHI LGL + G A +L+ + + + + A+ + G + +GR+ +G N
Sbjct: 104 TEHILLGLLSDGGGVAVGILRAMNIRTDDIVE-AIRHILGSSSNGDDGRQ----EGANNN 158
Query: 254 SISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN 313
G L F DL A + IDPVIGR+TEIQR+IQIL RRTKNN
Sbjct: 159 GDLGD--------------LTDFATDLNESAKQGKIDPVIGRDTEIQRVIQILSRRTKNN 204
Query: 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373
P+L+GE GVGKTAIAEGLA RIV VP L +KRI+SL +G ++AGAK RGE E R+
Sbjct: 205 PVLIGEPGVGKTAIAEGLAQRIVTGNVPEILRNKRIISLSIGSMLAGAKYRGEFEERLKK 264
Query: 374 LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433
I E+Q+ D+I+FIDE+HTL+G+G +G +D +N+LKP+L RGE Q I +TT D
Sbjct: 265 AIDEVQQHDDMIIFIDEIHTLVGAG----ATEG-AMDAANILKPALARGEFQVIGATTLD 319
Query: 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493
E++ EKD AL RRFQPV + EP++EDA+ IL GLR++YEA H K T EA+ AAV LS
Sbjct: 320 EYKKHIEKDAALERRFQPVQVGEPNEEDALEILKGLRDRYEAFHKAKITDEALKAAVTLS 379
Query: 494 ARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR--TVQAMH 551
+RYI+DR+LPDKAID+VDEA S+ +++F S PD E R TV+
Sbjct: 380 SRYITDRFLPDKAIDVVDEAASKVRMKVF-----------SAAPDVKALEDRLNTVKKEK 428
Query: 552 EVV-------QGSRLKYDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVAS 602
E + ++L+ ++ +V + D + E S ++ VV DDIAAV +
Sbjct: 429 EAAVTSQDFEKAAKLRDEEQSLVKEIDDKKSVAKEES-------EQKLVVTEDDIAAVVA 481
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
W+GIPV +I +E L+ LEE+L KRV+GQD+AV A+++AV+R+R GLKDP RP +
Sbjct: 482 QWTGIPVAKIADEESQTLLHLEEELHKRVVGQDDAVTAVAKAVRRARAGLKDPKRPIGSF 541
Query: 663 LFCGPTGVGKTELAKSLAACYFG 685
LF GPTGVGKTELA++LA+ FG
Sbjct: 542 LFLGPTGVGKTELARALASSLFG 564
>gi|302559271|ref|ZP_07311613.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
griseoflavus Tu4000]
gi|302476889|gb|EFL39982.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
griseoflavus Tu4000]
Length = 841
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|302553198|ref|ZP_07305540.1| ATP-dependent chaperone ClpB [Streptomyces viridochromogenes DSM
40736]
gi|302470816|gb|EFL33909.1| ATP-dependent chaperone ClpB [Streptomyces viridochromogenes DSM
40736]
Length = 841
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETAAAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|254386473|ref|ZP_05001776.1| clp-family ATP-binding protease [Streptomyces sp. Mg1]
gi|194345321|gb|EDX26287.1| clp-family ATP-binding protease [Streptomyces sp. Mg1]
Length = 841
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 257/616 (41%), Positives = 372/616 (60%), Gaps = 57/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G + G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG-YSGGGKESATAGGPAEGTPS-- 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 165 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 330 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 390 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIANVRRDKE---- 434
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D+ + ++ + A D D A V + IA V + +GIPV
Sbjct: 435 SAIDSQDFEKAASLRDSEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 494
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L +RVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 495 FKLTEEESSRLLRMEDELHRRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 554
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 555 VGKTELSKTLAEFLFG 570
>gi|256831690|ref|YP_003160417.1| ATPase AAA-2 domain-containing protein [Jonesia denitrificans DSM
20603]
gi|256685221|gb|ACV08114.1| ATPase AAA-2 domain protein [Jonesia denitrificans DSM 20603]
Length = 842
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/620 (41%), Positives = 366/620 (59%), Gaps = 69/620 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I Q P + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVTEII----------GEGQQAP---SGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP
Sbjct: 108 ILLGLIREGEGVAAQVLTKLGADLNRVRQQVIQLLSG---YQGKEPV------------G 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ A P ++ L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNPIL+G
Sbjct: 153 SGAPNEPTPAGSAVLDQFGRNLTQAAREGKLDPVIGRGKEIERVMQVLSRRTKNNPILIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQDIVAGDVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ + +TT DE+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTVGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS A+ IL GLR++YEAHH T +A+ AA L+ RYI+
Sbjct: 328 IEKDPALERRFQPIQVAEPSLPHAIEILKGLRDRYEAHHRVSITDDALVAAATLADRYIN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHI----------ELFKR----KKEQQTCILSKPPDDYWQEI 544
DRYLPDKAIDLVDEAG+R I EL +R ++E+++ I Q+
Sbjct: 388 DRYLPDKAIDLVDEAGARLRIRRMTAPPELRELDERIADARREKESAI-------DEQDF 440
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW 604
A+ R K +++ D + L + S+ DE D IA V ++
Sbjct: 441 EKAAAL-------RDKEKNLIQERQDKEKAWKNGDLDTVSEVDE------DLIAEVLAMS 487
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+GIPV ++ A+E ++ +E +L KRV+GQ+ A+ A+S+A++R+R GLKDP RP + +F
Sbjct: 488 TGIPVTRLNAEESQRILNMEAELHKRVVGQNRAIKALSQAIRRTRAGLKDPKRPGGSFIF 547
Query: 665 CGPTGVGKTELAKSLAACYF 684
GPTGVGKTELAK+LA F
Sbjct: 548 AGPTGVGKTELAKALAEYLF 567
>gi|291542191|emb|CBL15301.1| ATPases with chaperone activity, ATP-binding subunit [Ruminococcus
bromii L2-63]
Length = 821
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/610 (42%), Positives = 354/610 (58%), Gaps = 47/610 (7%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKARE 139
F+ FTE+A KA+ + A+ + + V T+H+L GL+ E E G+T D RE
Sbjct: 4 FKGFTEKANKALNLAIESAEEMRHNYVGTEHILYGLVKEGSGVAATALNECGVTEDALRE 63
Query: 140 AVVSIWHSTN--NQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ SI + + DD F+ TKRV AAV S GY ++ E
Sbjct: 64 KLESINGTMSLVELTPDD---------------FTPRTKRVLRAAVIISSKTGYTYVGTE 108
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ L + + D A L+ LGV V LA +QG + E++ +G
Sbjct: 109 HLLLAILSESDSYAVAFLEELGVSVERLAQAVSKGMQGGAEE-----GFGGFENESAPNG 163
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
SAL++F DLT A IDPVIGRE EIQR+IQIL RRTKNNP+L+
Sbjct: 164 SQKG--------GSALDKFGRDLTQAAKNGEIDPVIGREKEIQRVIQILSRRTKNNPVLI 215
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+AEGLA+ I + VP L KR++SLD+ ++AGAK RG+ E R+ I E
Sbjct: 216 GEPGVGKTAVAEGLALEIAKGNVPEILKDKRVVSLDLTGMVAGAKYRGDFEERIKAAIDE 275
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++KS + ILFIDE+HT++G+G +G+ D +N+LKPSL RG+ Q I +TT +E+R
Sbjct: 276 VKKSKNTILFIDELHTIVGAGAA----EGSA-DAANILKPSLARGDFQVIGATTLNEYRK 330
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EP+ E AV+IL GLR+ YEAHH K T EAINAAV LS+RYI
Sbjct: 331 YIEKDAALERRFQPVKVGEPTPEQAVQILKGLRDSYEAHHKVKITDEAINAAVTLSSRYI 390
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DRYLPDKAIDL+DE S+ + L L DY +E + + + +
Sbjct: 391 ADRYLPDKAIDLIDEGASK--VRLASLTSPDNVKELEDEIADYEKEKASAINEQDFERAA 448
Query: 558 RLKYD--DVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
RL+ + ++ + D + E ++ + V +DIA + S W+GIPV Q+T +
Sbjct: 449 RLRDEQKELQTKLDDAKKKWQEQQKGNSGE------VTAEDIAKIVSEWTGIPVVQLTKE 502
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ +E L +RVIGQ EAV AI++A++R RVGLKDP RP + +F GPTGVGKTEL
Sbjct: 503 ESERLLNMENVLHERVIGQSEAVTAIAKAIRRGRVGLKDPKRPVGSFIFLGPTGVGKTEL 562
Query: 676 AKSLAACYFG 685
K+LA FG
Sbjct: 563 CKALAEAMFG 572
>gi|395769499|ref|ZP_10450014.1| Clp family ATP-binding protease [Streptomyces acidiscabies 84-104]
Length = 842
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 371/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G ++ +E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG--YQQSKETATAGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 434 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKALAEFLFG 569
>gi|409356843|ref|ZP_11235230.1| ATPases with chaperone activity, ATP-binding subunit [Dietzia
alimentaria 72]
Length = 884
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/612 (42%), Positives = 366/612 (59%), Gaps = 45/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+ + + L G KE
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLTRVRQQVIQLLSGYQGKE---------AEATGAPAG 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+S + ++ L+QF +LT A E +DPV+GR E++RI+Q+L RRTKNNP+L+G
Sbjct: 159 AGGRESGTPSSSTVLDQFGRNLTQAAMEGKLDPVVGRAKEVERIMQVLSRRTKNNPVLIG 218
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ SLD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 219 EPGVGKTAVVEGLAQAIVNNEVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKVLKEI 278
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 279 NQRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKH 333
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP E ++ IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 334 IEKDAALERRFQPVQVPEPGVELSIEILKGLRDRYEAHHRVTITDAALAAAAQLADRYIN 393
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I KR ++ PPD + + +A E
Sbjct: 394 DRFLPDKAIDLIDEAGARMRI---KR--------MTAPPDLREFDEKIAEARREKESAID 442
Query: 559 LKYDDVVASMGDTS-EIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + DT +++ E S A D D AVV + IA V W+GIPV ++T
Sbjct: 443 AQDFEKAAGLRDTEKKLIAERSEREKQWRAGDMDVAAVVDEEQIAEVLGNWTGIPVFKLT 502
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQDEA+ A+SRA++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 503 EEETTRLLRMEEELSKRIIGQDEAIKAVSRAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 562
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 563 ELSKALANFLFG 574
>gi|290958398|ref|YP_003489580.1| Clp family ATP-binding protease [Streptomyces scabiei 87.22]
gi|260647924|emb|CBG71029.1| putative Clp-family ATP-binding protease [Streptomyces scabiei
87.22]
Length = 841
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|302544384|ref|ZP_07296726.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
hygroscopicus ATCC 53653]
gi|302462002|gb|EFL25095.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
himastatinicus ATCC 53653]
Length = 840
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/614 (41%), Positives = 371/614 (60%), Gaps = 55/614 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEAATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIADVRREKESAID 436
Query: 557 SRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
S + ++ A + D + ++ + A D D A V + IA V + +GIPV +
Sbjct: 437 S--QDFEMAAGLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDEELIAEVLATATGIPVFK 494
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+GVG
Sbjct: 495 LTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVG 554
Query: 672 KTELAKSLAACYFG 685
KTEL+K+LA FG
Sbjct: 555 KTELSKTLAEFLFG 568
>gi|294630658|ref|ZP_06709218.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
sp. e14]
gi|292833991|gb|EFF92340.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
sp. e14]
Length = 841
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/616 (42%), Positives = 371/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKETATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKALAEFLFG 568
>gi|417643008|ref|ZP_12293079.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
warneri VCU121]
gi|445060498|ref|YP_007385902.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus warneri SG1]
gi|330686262|gb|EGG97874.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU121]
gi|443426555|gb|AGC91458.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus warneri SG1]
Length = 817
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/617 (41%), Positives = 356/617 (57%), Gaps = 66/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + A + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQAPMATLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V L P ++ + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGS--------PEMSNKNAQANK 156
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S T L S R DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 157 SNNTPTLDSLAR-----------DLTIIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L +KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKNKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EP+ ED V IL GLR++YEAHH + EA+ AA LS R
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPTVEDTVSILKGLRDRYEAHHRINISDEALEAAAKLSHR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQ 548
Y+SDR+LPDKAIDL+DEA S+ ++ ++ EQQ + D + QE
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQQIEKVKNEKDAAVHAQEFENAA 440
Query: 549 AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ + +Y++ ++ + V S + +DIA V + W+GIP
Sbjct: 441 NLRDKQTKLEKQYEEAKNEWKNSQDGVSTS-------------LSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTRINETESDRLLNLEDTLHDRVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTELA++LA FG
Sbjct: 548 GVGKTELARALAESMFG 564
>gi|83999833|emb|CAH60133.1| putative Clp-family ATP-binding protease [Streptomyces
tenjimariensis]
Length = 841
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 371/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG--YSTGKETATAGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 434 SAIDAQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ++A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQEDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKTLAEFLFG 569
>gi|422012810|ref|ZP_16359452.1| Clp amino terminal domain protein [Actinomyces georgiae F0490]
gi|394752669|gb|EJF36341.1| Clp amino terminal domain protein [Actinomyces georgiae F0490]
Length = 822
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 266/620 (42%), Positives = 370/620 (59%), Gaps = 58/620 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI E GI D R
Sbjct: 1 MFERFTDRARRVVVLAQDEARGLKHNYIGTEHLLLGLITEGEGVAAKALETMGIKGDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
++V+ I KP +PF+ KRVFE ++ + G+N+I EH
Sbjct: 61 KSVIEIIGEGE-----------KPVE--GHIPFTPRAKRVFELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG--ELAKEGREPSLAKGVRENSIS 256
+ LGL +G A +VL + G D+ + + L G EGRE A
Sbjct: 108 LLLGLLKEGEGVAAQVLTKQGADLAQVRQTVIQMLSGYQRGDDEGRESVGAG-------- 159
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
P R+ ++ LEQF +LT A E +DPVIGR TE++R++Q+L RRTKNNP+L
Sbjct: 160 --VGGSGGPERSNSAILEQFGRNLTQAARENKLDPVIGRRTEMERVMQVLSRRTKNNPVL 217
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+ EGLA IV +VP + ++I SLDMG L+AG++ RG+ E R+ ++
Sbjct: 218 IGEPGVGKTAVVEGLAQAIVHGDVPETIKDRQIYSLDMGSLVAGSRYRGDFEERLKKVLK 277
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ GD+ILFIDE+HTL+G+G +G+ +D + +LKP L RGELQ I +TT DE+R
Sbjct: 278 EIRTRGDIILFIDEIHTLVGAGAA----EGS-IDAAQMLKPMLARGELQTIGATTNDEYR 332
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQPV + EPS ED + IL GLR++YEAHH T EAI +A L+ RY
Sbjct: 333 KYIEKDAALERRFQPVKVDEPSVEDTIEILKGLRDRYEAHHRVIITDEAIKSAAELADRY 392
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQ 555
+SDR+LPDKAIDLVDEAG+R I ++ PP E+R + + + E+ +
Sbjct: 393 VSDRFLPDKAIDLVDEAGARLRIRR-----------MTAPP-----ELRELDEKISELRR 436
Query: 556 GSRLKYDD----VVASMGDT-SEIVVESSLPSAS----DDDEPAVVGPDDIAAVASLWSG 606
DD A++ D S++ E A+ + DE A V +IA V ++ +G
Sbjct: 437 NKESAIDDQDFEKAAALRDQESKLGEERKAKEAAWKGGESDEIAEVTDHEIAEVLAMSTG 496
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E++L KRVIGQDEAV A+S++++R+R GLKDPNRP + +F G
Sbjct: 497 IPVVRLTQTETSKLLRMEDELHKRVIGQDEAVKALSQSIRRTRSGLKDPNRPGGSFIFAG 556
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAK+LA FG
Sbjct: 557 PTGVGKTELAKALAEFLFGD 576
>gi|256374490|ref|YP_003098150.1| ATPase AAA [Actinosynnema mirum DSM 43827]
gi|255918793|gb|ACU34304.1| ATPase AAA-2 domain protein [Actinosynnema mirum DSM 43827]
Length = 852
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/616 (41%), Positives = 369/616 (59%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G+EP+ A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSGYSG--GKEPAEAGGRGEGTPSS- 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT+ A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 165 -----------SLVLDQFGRNLTSMAREGKLDPVIGRAKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +V+ EVP L K++ +LD+ L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQMVVKGEVPETLKDKQLYTLDLSSLVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 329 VEKDPALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIN 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV-- 554
DRYLPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E
Sbjct: 389 DRYLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADVRRDKESAID 437
Query: 555 -----QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ ++L+ D +G +E D D A V + IA V + W+GIPV
Sbjct: 438 AQDFERAAKLR-DQEKTLLGQKAE---REKQWKDGDLDVVAEVDEEQIAEVLANWTGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ EAV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEETTRLLRMEDELHKRIIGQVEAVKAVSQAIRRTRAGLKDPKRPAGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKALANFLFG 569
>gi|359410042|ref|ZP_09202507.1| ATPase AAA-2 domain protein [Clostridium sp. DL-VIII]
gi|357168926|gb|EHI97100.1| ATPase AAA-2 domain protein [Clostridium sp. DL-VIII]
Length = 823
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 241/613 (39%), Positives = 369/613 (60%), Gaps = 56/613 (9%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKAREA 140
+ + TERA ++ ++ E++ V T+H+LLG++ ED + L+ G+ D +
Sbjct: 3 YNKLTERAQAVILEAESESEKFKHGYVGTEHVLLGILKEDGYSAKLLKKYGVNSDNIKTM 62
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + + TD+ + + TKR+ + + ++ + +++PEHI
Sbjct: 63 IQRYLGYGDIKKTDE------------NILLTPRTKRLIDESFAAAKKLNHKYVSPEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L L ++G A +LK L ++ ++ + L G E+ +S K+
Sbjct: 111 LALLNQEEGMAYTILKSLSLNFAIISEELLVFLSGNY--------------EDKVSDKST 156
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ L+++ DLTA + E+ +DPVIGR+ E QR+++ILCRR KNNP L+GE
Sbjct: 157 V--ENKKVATPMLDKYGRDLTALSKEQGLDPVIGRDNETQRLLEILCRRIKNNPCLIGEP 214
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTA+ EGLA RIV+ +P L SKR++SLD+ ++AGAK RGE E R+ + EI K
Sbjct: 215 GVGKTAVVEGLAQRIVEGNIPEILKSKRVISLDLTSMIAGAKYRGEFEERLKKTMEEIVK 274
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
D+I+FIDE+HT+IG+G G +G +D SN+LKP+L RGE+QCI +TT DE+R E
Sbjct: 275 DKDIIIFIDEIHTIIGAG----GAEG-AIDASNILKPALARGEIQCIGATTIDEYRKYIE 329
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS+E+ + IL GLR+KYEAHH + T EA+ AAV+LS RYI+DR
Sbjct: 330 KDSALERRFQPITVGEPSKEETLEILKGLRDKYEAHHRVEITDEALEAAVNLSDRYITDR 389
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQGSR 558
++PDKAIDL+DE ++ I+ L+ PPD D ++I + E + R
Sbjct: 390 FMPDKAIDLIDEGAAKVRIQ-----------SLTTPPDLKDLEEKIENIGKEKE--EAIR 436
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPA------VVGPDDIAAVASLWSGIPVQQI 612
++ + A + D E ++ L + D+ + +V ++IA+V S W+ IP++++
Sbjct: 437 VQDFERAARLRD-QERALKEQLNNMKDNWDTQNSIKTLIVDAENIASVVSSWTKIPIEKL 495
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ LE+ L +RVIGQ+EAV +I+RAV+R+RVG+KDPNRP + +F GPTGVGK
Sbjct: 496 TESESERLLNLEDILHRRVIGQNEAVKSIARAVRRARVGIKDPNRPIGSFIFLGPTGVGK 555
Query: 673 TELAKSLAACYFG 685
TEL+K+LA FG
Sbjct: 556 TELSKALAEAMFG 568
>gi|54022379|ref|YP_116621.1| Clp protease [Nocardia farcinica IFM 10152]
gi|54013887|dbj|BAD55257.1| putative Clp protease [Nocardia farcinica IFM 10152]
Length = 851
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/613 (41%), Positives = 369/613 (60%), Gaps = 50/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP E+ G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPV------ESGARGE 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T +P + + L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 TG---TP--STSLVLDQFGRNLTQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVNGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 329 IEKDAALERRFQPVQVGEPTVEHTINILKGLRDRYEAHHRVSITDGALVAAATLADRYIN 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 389 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDKIADARREKESAID 437
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + D + +V + D D A V + IA V + W+GIPV ++T
Sbjct: 438 AQDFEKAARLRDKEKQLVAKRAEREKQWRSGDLDVVAEVDDEQIAEVLANWTGIPVFKLT 497
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 498 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 557
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 558 ELSKALANFLFGD 570
>gi|402829159|ref|ZP_10878040.1| Clp amino terminal domain protein [Slackia sp. CM382]
gi|402284913|gb|EJU33406.1| Clp amino terminal domain protein [Slackia sp. CM382]
Length = 865
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/615 (41%), Positives = 377/615 (61%), Gaps = 48/615 (7%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL-----ESGITIDK 136
FE+FT++A +I +Q EA++LG V ++ LLLGLI E P G + GI DK
Sbjct: 3 FEKFTDKARHVLILAQDEARALGAAEVGSEFLLLGLIQE---PEGMAAQALSQVGIVYDK 59
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
AR ++ + DA + + ++ FS + KR+ E A+ + G +I+
Sbjct: 60 AR----AVAARRTEESKKDAVEAPEGQTGKTRLSFSSAAKRILENALREAMQMGQTYIST 115
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EH+ LG+ D A RVL LG++ + AV +L G+ +A G+ S
Sbjct: 116 EHLLLGILREDACGALRVLSELGIEAD-----AVRSALNDLV--GKPSPVAPGM--PFFS 166
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
G + + +S LE+F DLT +A +DPVIGR EI+R++Q+L RR KNNP+L
Sbjct: 167 G------ADPKGDSSMLEEFGTDLTKKARRGTLDPVIGRSAEIERVLQVLSRRQKNNPLL 220
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+AEGLA I +VP + KR+++LD+ L+AG+K RGE E R+ ++
Sbjct: 221 IGEPGVGKTAVAEGLAELIAAGQVPDIIRDKRVITLDVSALVAGSKYRGEFEDRLKKVVK 280
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
E+ K+GDVILFIDE+HT+IG+G+ +G+ +D + +LKP L RGE+Q I +TT +E+R
Sbjct: 281 EVIKAGDVILFIDEMHTIIGAGSA----EGS-IDAAAILKPPLSRGEIQVIGATTTEEYR 335
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD ALARRFQ + + EPS+E AVRIL GLR++YEAHH+ ++T EAI +AV +S RY
Sbjct: 336 KHLEKDTALARRFQTITVGEPSEEQAVRILEGLRDRYEAHHHVRYTDEAIQSAVSMSVRY 395
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQ----AMHE 552
I DR+LPDKAID++DEAG+RA I R ++ L DD + +R + A E
Sbjct: 396 IQDRFLPDKAIDVMDEAGARARIR--NRVLPEEVLKL----DDELRRVRNDREDAVAKQE 449
Query: 553 VVQGSRLKYDD-VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ ++L+ ++ V+ + D ++ E + + +G +IA V SL SG+PV
Sbjct: 450 YEKAAKLRDEETVLTAKRDEAQKKAEEEADAIVSE-----IGESEIAEVVSLASGVPVHD 504
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T DE L+ +E L +R+IGQ+EAV A+S+A++RSR GLKDP RP + +F GP+GVG
Sbjct: 505 LTEDEAKKLLRMEGVLHERIIGQEEAVTALSKAIRRSRSGLKDPRRPAGSFIFLGPSGVG 564
Query: 672 KTELAKSLAACYFGS 686
KTEL+K+LA F S
Sbjct: 565 KTELSKALAEFLFSS 579
>gi|299541899|ref|ZP_07052222.1| negative regulator of genetic competence clpC/mecB [Lysinibacillus
fusiformis ZC1]
gi|424739339|ref|ZP_18167758.1| negative regulator of genetic competence clpC/mecB [Lysinibacillus
fusiformis ZB2]
gi|298725637|gb|EFI66278.1| negative regulator of genetic competence clpC/mecB [Lysinibacillus
fusiformis ZC1]
gi|422946736|gb|EKU41142.1| negative regulator of genetic competence clpC/mecB [Lysinibacillus
fusiformis ZB2]
Length = 814
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 270/615 (43%), Positives = 375/615 (60%), Gaps = 61/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFT+RA K + +Q EA + + T+H+LLGLI E G KA EA
Sbjct: 2 MFNRFTQRAQKVLQLAQEEAIRWKHESIGTEHILLGLIRE---------GGGIAAKALEA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ I ++ +GK + ++ K+V E +V+ SR G+++I EH+
Sbjct: 53 I-DISPQMIEAGIEELVGKGKE-DVGPIVHYTPRAKKVIELSVDESRKLGHSYIGTEHLL 110
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L L +G A RVL GV +N K ++ L G +N+ SG+ A
Sbjct: 111 LALIREGEGVAARVLNNAGVGLN---------------KARQQVLLLLGNNDNAQSGQQA 155
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
A + T L+ DLT A E +DPVIGR EI R+I++L RRTKNNP+L+GE
Sbjct: 156 AQAANTPT----LDSLARDLTQIAREGTLDPVIGRSKEITRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEGA-IDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E+A+ I+ GLR++YEAHH K T EAI AA +S RYISDR
Sbjct: 327 KDAALERRFQPIQVDEPTVEEAILIIQGLRDRYEAHHRVKITDEAIEAAAKMSDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAMHEVVQ 555
+LPDKAIDL+DEAGS+ + F + PP +D + +R+ + + V
Sbjct: 387 FLPDKAIDLIDEAGSKVRLRSF-----------AVPPNLKALEDKLENVRSEK--NAAVS 433
Query: 556 GSRLKYDDVVASMGDTSEIV---VESSLPSASDDDEPA--VVGPDDIAAVASLWSGIPVQ 610
G + A++ DT + + +E++ + ++ A V DD+AAV S+W+GIPV
Sbjct: 434 GQEFEK---AAALRDTEQKLKDEIEATRKNWKEEQGKAESKVTVDDVAAVVSMWTGIPVA 490
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
+I ++E L+ LEE+L KRV+GQ EAV AISRA++R+R GLKDP RP + +F GPTGV
Sbjct: 491 KIASEESSKLLQLEEELHKRVVGQGEAVEAISRAIRRARAGLKDPKRPIGSFIFLGPTGV 550
Query: 671 GKTELAKSLAACYFG 685
GKTELA++LA FG
Sbjct: 551 GKTELARALAEVMFG 565
>gi|326778547|ref|ZP_08237812.1| ATPase AAA-2 domain protein [Streptomyces griseus XylebKG-1]
gi|326658880|gb|EGE43726.1| ATPase AAA-2 domain protein [Streptomyces griseus XylebKG-1]
Length = 863
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/621 (41%), Positives = 368/621 (59%), Gaps = 66/621 (10%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKA 137
++FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++
Sbjct: 21 TMFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAV 80
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R+ V I QG+ + + +PF+ K+V E ++ + G+N+I E
Sbjct: 81 RQQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTE 127
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G A +VL +LG D+N + + L G G+E + A G E + S
Sbjct: 128 HILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSG--GKEAATAGGPAEGTPS- 184
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+
Sbjct: 185 -----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLI 233
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 234 GEPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKE 293
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 294 IRTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRK 348
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYI
Sbjct: 349 HLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYI 408
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
SDR+LPDKAIDL+DEAGSR I ++ PPD ++ E + G
Sbjct: 409 SDRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPD--------LREFDEKIAGV 449
Query: 558 RLKYDDVV--------ASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLW 604
R + + AS+ D + ++ + A D D A V + IA V +
Sbjct: 450 RRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATA 509
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+GIPV ++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F
Sbjct: 510 TGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIF 569
Query: 665 CGPTGVGKTELAKSLAACYFG 685
GP+GVGKTEL+K+LA FG
Sbjct: 570 AGPSGVGKTELSKTLAEFLFG 590
>gi|385680704|ref|ZP_10054632.1| ATPase with chaperone activity, ATP-binding subunit [Amycolatopsis
sp. ATCC 39116]
Length = 850
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/617 (41%), Positives = 372/617 (60%), Gaps = 60/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG---YQGKEPAEA----------- 153
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A + G +S L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+
Sbjct: 154 -GAGRGEGTPSSSLVLDQFGRNLTQSAREGKLDPVIGRGKEIERVMQVLSRRTKNNPVLI 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 213 GEPGVGKTAVVEGLAQNIVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 273 IKTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLEEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ AA L+ RYI
Sbjct: 328 YIEKDAALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV- 554
+DR+LPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E
Sbjct: 388 NDRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAKVRRDKESAI 436
Query: 555 ------QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ +RL+ D+ + SE D D A V + IA V + W+GIP
Sbjct: 437 DAQDFERAARLR-DEEKNLLAQKSE---REKQWKDGDLDVVAEVDDEQIAEVLANWTGIP 492
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T +E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+
Sbjct: 493 VFKLTEEETTRLLRMEDELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPS 552
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTEL+K+LA FG
Sbjct: 553 GVGKTELSKALAEFLFG 569
>gi|420237566|ref|ZP_14742031.1| Clp protease [Parascardovia denticolens IPLA 20019]
gi|391879188|gb|EIT87700.1| Clp protease [Parascardovia denticolens IPLA 20019]
Length = 862
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/634 (40%), Positives = 376/634 (59%), Gaps = 50/634 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+ +D AR
Sbjct: 1 MFERFTDRARRVIVLAQEEARALKHNYIGTEHLLLGLIREGEGVAAKSLASKGVELDAAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + + AA G +PF+ ++V E ++ + G+++I EH
Sbjct: 61 QQVEEMIGKGS------AAPTGH-------IPFTPHARQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++GVD+ +L + + R+ S + + SG
Sbjct: 108 ILLGLIREGEGVGTQVLVKMGVDIANLRTTVIDSI--------RDTSAGSSSGQMANSGG 159
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A R+ +S L+QF +LT A + +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 160 VA--DKTNRSGSSLLDQFGRNLTQEAKDGKLDPVIGRSNEIERVMVVLSRRTKNNPVLIG 217
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +IV +VP L K+I +LD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 218 EPGVGKTAVVEGLAEKIVADDVPETLKDKQIYALDLGSMIAGSRYRGDFEERLKKVLKEI 277
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
Q GDV+LFIDE+HT++G+G+ G G S++LKP L RGELQ I +TT +E+R
Sbjct: 278 QVRGDVVLFIDEIHTIVGAGSAD-GAMGA----SDMLKPMLARGELQTIGATTTEEYRKY 332
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EP+ + + IL GLR+KYE HH+ T EAI AA LSARYI
Sbjct: 333 IEKDAALERRFQPIQVAEPTIAETIEILKGLRKKYEDHHHVTITDEAIQAAAELSARYIQ 392
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I KR L+ P +++ + + Q
Sbjct: 393 DRHLPDKAIDLIDEAGARLRI---KR--------LTAPSALKELDMKVAKVKADKDQAIA 441
Query: 559 LKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D E + + + D VV D IA V S +GIPV ++T
Sbjct: 442 DQDFEKAASLRDAQEKLEQERKDKEKSWREGESDVSMVVTEDTIAHVISSSTGIPVFKLT 501
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+G+E+ L KRVIGQDEAV+A++R+++R+RVGLKDP RP+ + +F GPTGVGKT
Sbjct: 502 ETESKKLLGMEDSLHKRVIGQDEAVSALARSIRRARVGLKDPRRPSGSFIFAGPTGVGKT 561
Query: 674 ELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
ELAK+LA F +R+ F +++ ++
Sbjct: 562 ELAKALAEYLFDDEDALIRVDMSEFGEKYSTSRL 595
>gi|365866162|ref|ZP_09405787.1| putative ATP-dependent Clp protease [Streptomyces sp. W007]
gi|364004427|gb|EHM25542.1| putative ATP-dependent Clp protease [Streptomyces sp. W007]
Length = 842
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 370/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSG--GKEAATAGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 434 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKTLAEFLFG 569
>gi|386384235|ref|ZP_10069633.1| ATPase AAA-2 domain-containing protein [Streptomyces tsukubaensis
NRRL18488]
gi|385668306|gb|EIF91651.1| ATPase AAA-2 domain-containing protein [Streptomyces tsukubaensis
NRRL18488]
Length = 841
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 370/616 (60%), Gaps = 59/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YSGKEAATAGGPAEGTPS-- 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 163 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 328 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 388 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 432
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 433 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 493 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 552
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 553 VGKTELSKTLAEFLFG 568
>gi|357412696|ref|YP_004924432.1| ATPase AAA [Streptomyces flavogriseus ATCC 33331]
gi|320010065|gb|ADW04915.1| ATPase AAA-2 domain protein [Streptomyces flavogriseus ATCC 33331]
Length = 841
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 370/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSG--GKEAATAGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 434 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKTLAEFLFG 569
>gi|206901239|ref|YP_002251189.1| negative regulator of genetic competence ClpC/mecB [Dictyoglomus
thermophilum H-6-12]
gi|206740342|gb|ACI19400.1| negative regulator of genetic competence ClpC/mecB [Dictyoglomus
thermophilum H-6-12]
Length = 823
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/611 (42%), Positives = 381/611 (62%), Gaps = 43/611 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ ++ T+RA + ++ +Q EA+ L V T+H+LLGLI E E GI A +
Sbjct: 1 MMDKLTQRAYRVLLLAQEEARRLNYSTVGTEHILLGLIRE--------EGGI----AAQV 48
Query: 141 VVSIWHSTNN--QDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
++++ N+ + + +G S A +PF+ K+V E A E ++ +N+I EH
Sbjct: 49 LINLGLDLNHLRNEIERLIGRGDGTSYGA-LPFTSRAKKVLEYASESAQELNHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A VL+ +GV + + + + +L GE +P+ +G ++ + S
Sbjct: 108 LLLGLLKEGEGVAAHVLEGMGVRLEDVT-IEILKLLGEPI----DPTKIRGRQQMNTSTN 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ K RT + L++F DLT A + +DP+IGRE E++RIIQIL RRTKNNP+L+G
Sbjct: 163 NSLKKK--RTVTATLDEFGRDLTQLARQGKLDPIIGREKELERIIQILSRRTKNNPVLVG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAI EGLA +IV+ +VP LL+KRI+++DMG ++AG K RGE E R+ +I E+
Sbjct: 221 EPGVGKTAIVEGLAQKIVEGDVPDTLLNKRIVAIDMGSIVAGTKYRGEFEERMQRIIEEV 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + DVILFIDE+HTL+G+G +D +N+LKPSL +GE+Q I +TT E+R
Sbjct: 281 KMAKDVILFIDEIHTLVGAGAA-----EGAVDAANILKPSLAKGEIQLIGATTPSEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+++ EP+ E+ ++IL GL+E+YE +H K T EAI AV LS RYI+
Sbjct: 336 IEKDGALERRFQPIMVDEPTPEETIQILKGLKERYENYHRVKITDEAIEEAVKLSVRYIT 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAID++DEA +R + L K+K Q+ + E+ ++ E+ R
Sbjct: 396 DRFLPDKAIDVIDEASAR--VRLRKQKNTAQSNL--------ELELARIREQKEI--AIR 443
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPA---VVGPDDIAAVASLWSGIPVQQITAD 615
+ + A + D E +E L + D P+ VV P+D+A V + W+GIPV Q+ +
Sbjct: 444 NQAFERAAQLRD-EERKIEEYLRNFIDTTAPSNFGVVTPEDVAQVVATWTGIPVAQLLIE 502
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
ER L+ +EE+L KR+I QDEAV +SRA++RSR GLKDP RP +F GPTGVGKTEL
Sbjct: 503 ERERLLRMEEELHKRIISQDEAVRVVSRAIRRSRSGLKDPRRPIGVFMFLGPTGVGKTEL 562
Query: 676 AKSLAACYFGS 686
A++LA FG+
Sbjct: 563 ARALAEYLFGN 573
>gi|255325858|ref|ZP_05366950.1| negative regulator of genetic competence ClpC/mecB [Corynebacterium
tuberculostearicum SK141]
gi|255297070|gb|EET76395.1| negative regulator of genetic competence ClpC/mecB [Corynebacterium
tuberculostearicum SK141]
Length = 922
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/623 (41%), Positives = 366/623 (58%), Gaps = 47/623 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEDVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I + T +PF+ K+V E ++ G+ +I E
Sbjct: 61 REVEEIIGQGSQPHT-------------GHIPFTPRAKKVLELSLREGLQMGHKYIGTEF 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL DG A +VL +LG D+ + + L G + S +G
Sbjct: 108 LLLGLIREGDGVAAQVLTKLGADLPRVRQQVIQLLSGYEGGQQEGGSSNGQGSGPVGAGA 167
Query: 259 TAALKSPG---------RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRR 309
A + G R+ + L+QF +LT A + +DPV+GRE+E++RI+Q+L RR
Sbjct: 168 GAGAGAGGRGGSGGSGERSNSLVLDQFGRNLTQAAKDGKLDPVVGRESEVERIMQVLSRR 227
Query: 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEA 369
TKNNP+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E
Sbjct: 228 TKNNPVLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEE 287
Query: 370 RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429
R+ ++ EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +
Sbjct: 288 RLKKVLKEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGA 342
Query: 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489
TT +E+R EKD AL RRFQPV + EPS +D IL GLR+KYEAHH +T EA++AA
Sbjct: 343 TTLEEYRKHIEKDAALERRFQPVKVEEPSLDDTFLILKGLRDKYEAHHRVSYTDEALHAA 402
Query: 490 VHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQA 549
LS RYI+DR+LPDKA+DL+DEAG+R I+ K + DD E+R +
Sbjct: 403 ASLSDRYINDRFLPDKAVDLLDEAGARMRIKRMTAPKGLREV------DDRIAEVRKEKE 456
Query: 550 M------HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
E G R D +G+ E + + D +E A VG D IA V +
Sbjct: 457 AAIDAQDFEKAAGLR----DKERKLGE--ERAEKEKQWRSGDLEEIAEVGEDQIAEVLAH 510
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIPV ++T E L+ +EE+L KR+IGQDEAV ++SRA++R+R GLKDP RP+ + +
Sbjct: 511 WTGIPVLKLTEKESNRLLNMEEELHKRIIGQDEAVKSVSRAIRRTRAGLKDPRRPSGSFI 570
Query: 664 FCGPTGVGKTELAKSLAACYFGS 686
F GP+GVGKTEL+KSLA FGS
Sbjct: 571 FAGPSGVGKTELSKSLANFLFGS 593
>gi|228989289|ref|ZP_04149281.1| Negative regulator of genetic competence [Bacillus pseudomycoides
DSM 12442]
gi|228770442|gb|EEM19014.1| Negative regulator of genetic competence [Bacillus pseudomycoides
DSM 12442]
Length = 811
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ + + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEMSQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEATSGHQ------------GGASA 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVAREGRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++++IL GLR++YEAHH T +AI AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESIQILRGLRDRYEAHHRVSITDDAIEAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PPD E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPDLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETNKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|228995472|ref|ZP_04155141.1| Negative regulator of genetic competence [Bacillus mycoides
Rock3-17]
gi|229003095|ref|ZP_04160946.1| Negative regulator of genetic competence [Bacillus mycoides
Rock1-4]
gi|228758155|gb|EEM07349.1| Negative regulator of genetic competence [Bacillus mycoides
Rock1-4]
gi|228764276|gb|EEM13154.1| Negative regulator of genetic competence [Bacillus mycoides
Rock3-17]
Length = 811
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ + + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEMSQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEATSGHQ------------GGASA 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVAREGRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++++IL GLR++YEAHH T +AI AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESIQILRGLRDRYEAHHRVSITDDAIEAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PPD E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPDLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETNKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|407641646|ref|YP_006805405.1| Clp protease [Nocardia brasiliensis ATCC 700358]
gi|407304530|gb|AFT98430.1| Clp protease [Nocardia brasiliensis ATCC 700358]
Length = 772
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/612 (41%), Positives = 364/612 (59%), Gaps = 50/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP SG
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPVE---------SGS 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 156 RGEAGTP--STSLVLDQFGRNLTQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVNGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 329 IEKDAALERRFQPVQVGEPTVEHTINILKGLRDRYEAHHRVSITDGALVAAATLADRYIN 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 389 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDKIADARREKESAID 437
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + D + +V + D D A V + IA V + W+GIPV ++T
Sbjct: 438 AQDFEKAARLRDKEKQLVAKRAEREKQWRSGDLDVVAEVDDEQIAEVLANWTGIPVFKLT 497
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 498 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 557
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 558 ELSKALANFLFG 569
>gi|311740167|ref|ZP_07713999.1| ATP-dependent Clp protease ATP-binding subunit ClpC
[Corynebacterium pseudogenitalium ATCC 33035]
gi|311304722|gb|EFQ80793.1| ATP-dependent Clp protease ATP-binding subunit ClpC
[Corynebacterium pseudogenitalium ATCC 33035]
Length = 918
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/623 (41%), Positives = 366/623 (58%), Gaps = 47/623 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEDVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I + T +PF+ K+V E ++ G+ +I E
Sbjct: 61 REVEEIIGQGSQPHT-------------GHIPFTPRAKKVLELSLREGLQMGHKYIGTEF 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL DG A +VL +LG D+ + + L G + S +G
Sbjct: 108 LLLGLIREGDGVAAQVLTKLGADLPRVRQQVIQLLSGYEGGQQEGGSSNGQGSGPVGAGA 167
Query: 259 TAALKSPG---------RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRR 309
A + G R+ + L+QF +LT A + +DPV+GRE+E++RI+Q+L RR
Sbjct: 168 GAGAGAGGRGGSGGSGERSNSLVLDQFGRNLTQAAKDGKLDPVVGRESEVERIMQVLSRR 227
Query: 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEA 369
TKNNP+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E
Sbjct: 228 TKNNPVLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEE 287
Query: 370 RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429
R+ ++ EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +
Sbjct: 288 RLKKVLKEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGA 342
Query: 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489
TT +E+R EKD AL RRFQPV + EPS +D IL GLR+KYEAHH +T EA++AA
Sbjct: 343 TTLEEYRKHIEKDAALERRFQPVKVEEPSLDDTFLILKGLRDKYEAHHRVSYTDEALHAA 402
Query: 490 VHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQA 549
LS RYI+DR+LPDKA+DL+DEAG+R I+ K + DD E+R +
Sbjct: 403 ASLSDRYINDRFLPDKAVDLLDEAGARMRIKRMTAPKGLREV------DDRIAEVRKEKE 456
Query: 550 M------HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
E G R D +G+ E + + D +E A VG D IA V +
Sbjct: 457 AAIDAQDFEKAAGLR----DKERKLGE--ERAEKEKQWRSGDLEEIAEVGEDQIAEVLAH 510
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIPV ++T E L+ +EE+L KR+IGQDEAV ++SRA++R+R GLKDP RP+ + +
Sbjct: 511 WTGIPVLKLTEKESNRLLNMEEELHKRIIGQDEAVKSVSRAIRRTRAGLKDPRRPSGSFI 570
Query: 664 FCGPTGVGKTELAKSLAACYFGS 686
F GP+GVGKTEL+KSLA FGS
Sbjct: 571 FAGPSGVGKTELSKSLANFLFGS 593
>gi|254393706|ref|ZP_05008829.1| ATP-dependent Clp protease [Streptomyces clavuligerus ATCC 27064]
gi|294813216|ref|ZP_06771859.1| Clp-family ATP-binding protease [Streptomyces clavuligerus ATCC
27064]
gi|326441673|ref|ZP_08216407.1| putative ATP-dependent Clp protease [Streptomyces clavuligerus ATCC
27064]
gi|197707316|gb|EDY53128.1| ATP-dependent Clp protease [Streptomyces clavuligerus ATCC 27064]
gi|294325815|gb|EFG07458.1| Clp-family ATP-binding protease [Streptomyces clavuligerus ATCC
27064]
Length = 841
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 370/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSG--GKEAATAGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 434 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKTLAEFLFG 569
>gi|333896156|ref|YP_004470030.1| ATPase AAA [Thermoanaerobacterium xylanolyticum LX-11]
gi|333111421|gb|AEF16358.1| ATPase AAA-2 domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 810
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 275/634 (43%), Positives = 372/634 (58%), Gaps = 65/634 (10%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKA 137
++F RF+E+A K + +Q EA+SL + V T+H+LLGLI E D + L+S G+T +
Sbjct: 2 AMFGRFSEKAQKVLYQAQEEARSLYHNYVGTEHILLGLIKEEDGIASRVLKSLGVTYEDI 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V S+ N P P KRV E + +R N+I E
Sbjct: 62 RAKVESLIGMGN-----------VPGDVVGYTP---RAKRVLELSFAEARRFNTNYIGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKE-GREPSLAKGVRENSIS 256
HI LGL +G A R+L LGVD N R++ E+ K EPS
Sbjct: 108 HILLGLIREGEGVAVRILMELGVDFN--------RVREEIVKMVSEEPS----------- 148
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
G T + T L QF DLT A E +DPVIGRE EI+R+IQIL RRTKNNP L
Sbjct: 149 GTTNKAQRAKNTNTPNLNQFGRDLTELAREGKLDPVIGREKEIERVIQILSRRTKNNPCL 208
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA I +P L KR+++LDM ++AG K RGE E R+ +++
Sbjct: 209 IGEPGVGKTAIAEGLAEAIESGTIPEILKGKRVVTLDMASMVAGTKYRGEFEDRLKNVLN 268
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
E+ K+G+VILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 269 EVIKAGNVILFIDELHTIIGAGAA-----EGAIDASNILKPALARGEIQVIGATTIDEYR 323
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+++ EPS E+ + IL GLR+KYEAHH K T EAI AA LS RY
Sbjct: 324 KYIEKDPALERRFQPIMVEEPSVEETIEILKGLRDKYEAHHRIKITDEAIEAAAKLSHRY 383
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQA 549
I+DR+LPDKAIDL+DEA SR ++ ++ E + +L+K ++ QE
Sbjct: 384 ITDRFLPDKAIDLIDEAASRVRLKTVTAPPEIKELEDKLNMLNKDKEEAIRTQEYEKAAK 443
Query: 550 MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ + Q + + +++ + S +V E S VG ++I+ + SLW+GIP
Sbjct: 444 IRDEEQKVKEQLENLKSKWQQNS-LVKEKS------------VGAEEISQIVSLWTGIPT 490
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
Q++ +E L+ LEE L KRVIGQDEAV A++RA++R+RVGLKDP RP + +F GPTG
Sbjct: 491 QKLAQEESERLLHLEEILHKRVIGQDEAVDAVARAIRRARVGLKDPKRPIGSFIFLGPTG 550
Query: 670 VGKTELAKSLAACYFGS----VRIHYLFFPSPFN 699
VGKTEL+K+LA FG VRI + F+
Sbjct: 551 VGKTELSKALAEAMFGDESAIVRIDMSEYMEKFS 584
>gi|182437911|ref|YP_001825630.1| ATP-dependent Clp protease [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466427|dbj|BAG20947.1| putative ATP-dependent Clp protease [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 842
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 370/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSG--GKEAATAGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 434 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKTLAEFLFG 569
>gi|289705692|ref|ZP_06502076.1| negative regulator of genetic competence ClpC/MecB [Micrococcus
luteus SK58]
gi|289557532|gb|EFD50839.1| negative regulator of genetic competence ClpC/MecB [Micrococcus
luteus SK58]
Length = 851
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 367/616 (59%), Gaps = 49/616 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFT+RA + V+ +Q EA+ L + T+H+LLGLI E G+
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHSYIGTEHILLGLIHEG--------EGVAAKALESM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+S+ D Q P +PF+ K+V E ++ + G+N+I EHI
Sbjct: 53 DISLGAVREKVQEDIGQGQQNP---PGHIPFTPRAKKVLELSLREALQLGHNYIGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG-ELAKEGREPSLAKGVRENSISGKT 259
LGL +G A +VL +LG D+N + + L G + +G + + GV + + SG+
Sbjct: 110 LGLIREGEGVAAQVLVQLGADLNRVRQTVIQLLSGYQGGAQGGKETAGAGVGQGAESGQN 169
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A + L+QF +LTA A + +DPVIGR E++R++Q+L RRTKNNP+L+GE
Sbjct: 170 AG--------SVVLDQFGRNLTAAAHDGKLDPVIGRAGEMERVMQVLSRRTKNNPVLIGE 221
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTA+ EGLA I + +VP L K++ SLD+G L+AG++ RG+ E R+ ++ EI+
Sbjct: 222 PGVGKTAVVEGLAQAIDRGDVPETLRDKQLYSLDLGSLVAGSRYRGDFEERLKKVLKEIR 281
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 282 TRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKHI 336
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ ++EPS EDA IL GLR++YEAHH T A+ AA L+ RY+SD
Sbjct: 337 EKDAALERRFQPIQVAEPSVEDATEILRGLRDRYEAHHKVSITDGALKAAAGLADRYVSD 396
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQG 556
R+LPDKAIDL+DEAG+R I ++ PP+ Y I V+ E + G
Sbjct: 397 RHLPDKAIDLIDEAGARLRIRR-----------MTVPPEIKAYESRIAEVRTQKEAAIDG 445
Query: 557 SRLKYDDVVASMGDTSEIV------VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ A + D + + E + + +D D A V D IA V S +GIPV
Sbjct: 446 QDFEG---AARLRDQEQQLEDERREKEQAWRTGADAD-VATVDEDLIAEVLSKSTGIPVF 501
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L +EE+L +RVIGQDEA+ ++SRA++R+R GLKDPNRP+ + +F GPTGV
Sbjct: 502 KLTEEETDRLRNMEEELHRRVIGQDEAIKSLSRAIRRTRAGLKDPNRPSGSFIFAGPTGV 561
Query: 671 GKTELAKSLAACYFGS 686
GKTELAKSLA FG
Sbjct: 562 GKTELAKSLAEFLFGD 577
>gi|260584980|ref|ZP_05852723.1| negative regulator of genetic competence ClpC/MecB [Granulicatella
elegans ATCC 700633]
gi|260157286|gb|EEW92359.1| negative regulator of genetic competence ClpC/MecB [Granulicatella
elegans ATCC 700633]
Length = 827
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/606 (41%), Positives = 364/606 (60%), Gaps = 39/606 (6%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL--ESGITIDKAREA 140
E FT++A A++ + REA S V T+HLLLGL+ E G L E G+T + R+
Sbjct: 3 EMFTDKARSAMVLAAREAISFRHQAVGTEHLLLGLVIEQEGIAGILLRERGLTAEIVRQE 62
Query: 141 VVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ ++ + +N ++ D P+ MP+S K+V AA E ++ + EH+
Sbjct: 63 IEALTGYGSNRKEID-------PYL----MPYSPRAKQVVVAATEEAKRLKIPQVGTEHL 111
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL ++ A ++++ + + L ++ G +PS A+ + +SG +
Sbjct: 112 LLGLLQ-EEVLATKIMRDNHISLEELMKTIYEKI-------GIQPSKARSTK-GQVSGNS 162
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A K+P L+ DLTA A + +DPVIGR E++R+IQ++ RRTKNNP+L+GE
Sbjct: 163 AKDKTP------TLDSLSRDLTALARQGKLDPVIGRNEEVRRMIQVISRRTKNNPVLVGE 216
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA R++ EVP + SKR+M LDMG L+AG K RGE E R+ +I EI
Sbjct: 217 PGVGKTAIVEGLAQRMINGEVPEEIASKRLMMLDMGALVAGTKYRGEFEERMKKIIEEIY 276
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
DVILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQ I +TT DE++
Sbjct: 277 TQQDVILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQVIGATTLDEYQKYI 331
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRF + + EP+ ED+++IL GLR+ YEAHH+ + T EAI AAV LS RYI+
Sbjct: 332 EKDAALERRFASIHVEEPTAEDSIQILKGLRKHYEAHHHVEITDEAIQAAVQLSVRYITS 391
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R LPDKAIDL+DE ++A +++ + +L + +++++ H+ +
Sbjct: 392 RRLPDKAIDLMDETAAKARLDVTTK---VSPIVLLEEEILQFEQLKNQAIQHQNFDEAAK 448
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERML 619
+A ++V L S+ D A +G DIA V S W+GIP+QQ+ E
Sbjct: 449 FRKKELAKRAKLEKLV--EKLESSPQTDYIASIGEGDIAEVVSQWTGIPLQQMEKKESER 506
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ LE L KRVIGQ EAV+A++R+++R+R GLKDP RP + LF GPTGVGKTELAK+L
Sbjct: 507 LINLESVLHKRVIGQSEAVSAVARSIRRARSGLKDPRRPIGSFLFLGPTGVGKTELAKTL 566
Query: 680 AACYFG 685
A FG
Sbjct: 567 AEAMFG 572
>gi|345000382|ref|YP_004803236.1| ATPase AAA-2 domain-containing protein [Streptomyces sp. SirexAA-E]
gi|344316008|gb|AEN10696.1| ATPase AAA-2 domain protein [Streptomyces sp. SirexAA-E]
Length = 842
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 370/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSG--GKEAATAGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 434 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKTLAEFLFG 569
>gi|339626578|ref|YP_004718221.1| class III stress response-related ATPase [Sulfobacillus acidophilus
TPY]
gi|379006033|ref|YP_005255484.1| ATPase AAA-2 domain-containing protein [Sulfobacillus acidophilus
DSM 10332]
gi|339284367|gb|AEJ38478.1| class III stress response-related ATPase [Sulfobacillus acidophilus
TPY]
gi|361052295|gb|AEW03812.1| ATPase AAA-2 domain protein [Sulfobacillus acidophilus DSM 10332]
Length = 823
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 263/619 (42%), Positives = 369/619 (59%), Gaps = 65/619 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+F +FTE+A + VI +Q EA+ +G + V T+HLLLGLI E P L+S G+ ++ R
Sbjct: 1 MFGQFTEKARRVVINAQDEARRMGHNFVGTEHLLLGLIRESNSLPAKILQSIGLDLETVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRV-FEAAVEYSRSRGYNFIAPE 197
V+ A +G ++ F+ K+V E A E +R+ N+I PE
Sbjct: 61 SEVLK------------ATGRGPAIGPNEEVVFTPRAKKVVLELAGEEARALNQNYIGPE 108
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A +VL G D+N +++ +L + G E
Sbjct: 109 HLLLGLIREGEGVAAQVLLAAGADLN--------KVRHQLIQATGNTGGNSGGNEQQAQV 160
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
T L GR DLT A E +DPVIGR+ E +R+IQIL RRTKNNP+L+
Sbjct: 161 NTPTLDLYGR-----------DLTQMAREGKLDPVIGRDKEAERVIQILSRRTKNNPVLI 209
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA RIV+ +VP L +R+++LD+G ++AG+K RGE E R+ ++E
Sbjct: 210 GEPGVGKTAVVEGLAQRIVENKVPEILKDRRVVALDLGAMLAGSKYRGEFEDRLKRAMNE 269
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++ +VILFIDE+HT++G+G +D +N+LKP+L RGELQ I +TT DE+R
Sbjct: 270 IREAKNVILFIDEMHTIVGAGAAE-----GAIDAANILKPALARGELQAIGATTLDEYRK 324
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQP+++ EPS E+AV+IL GLR++YEAHH T +AI AAVHLS RY+
Sbjct: 325 YIERDPALERRFQPIMVEEPSAEEAVQILKGLRDRYEAHHRVNITDDAIEAAVHLSDRYV 384
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD-----DYWQEIRTVQAMHE 552
SDR+LPDKAIDL+DEA SR ++ + PPD D +EIR +
Sbjct: 385 SDRFLPDKAIDLIDEAASRVRLKSY-----------VAPPDLKDLADKLEEIR--KEKEA 431
Query: 553 VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDD-----EPAVVGPDDIAAVASLWSGI 607
VQ + A M D + + E + E V PDDIA + S W+GI
Sbjct: 432 AVQAQEFEK---AAQMRDEEQKLREELERQTHEWHNRQRVETITVTPDDIAHIVSSWTGI 488
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV+++ ++E L+ LEE+L +RV+GQ+EAV A+SRA++R+R GLK+P RP + LF GP
Sbjct: 489 PVERLASEESERLLNLEEELHRRVVGQEEAVRAVSRAIRRARAGLKNPRRPIGSFLFLGP 548
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGK+ELAK+LA FG
Sbjct: 549 TGVGKSELAKALAQALFGD 567
>gi|28493032|ref|NP_787193.1| ATP-dependent Clp protease ATP-binding subunit [Tropheryma whipplei
str. Twist]
gi|28572245|ref|NP_789025.1| Clp-family ATP-binding protease/regulator [Tropheryma whipplei
TW08/27]
gi|28410376|emb|CAD66762.1| putative Clp-family ATP-binding protease/regulator [Tropheryma
whipplei TW08/27]
gi|28476072|gb|AAO44162.1| ATP-dependent Clp protease ATP-binding subunit [Tropheryma whipplei
str. Twist]
Length = 840
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/612 (41%), Positives = 375/612 (61%), Gaps = 53/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+FERFT++A + ++ +Q EA++L + + T+H+LLGLI+E D LES IT+++AR
Sbjct: 5 MFERFTDKARRVIVLAQEEARTLSHNYIGTEHVLLGLISEGDGIAAQALESLDITLERAR 64
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V + N +++ +PF+ K+V E ++ + G+N+I EH
Sbjct: 65 EGVAELIGRGQN-------------ATSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 111
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS-LAKGVRENSISG 257
I LG+ +G A +VL +G ++ A+ + L ++GRE ++ G E SG
Sbjct: 112 ILLGILHEGEGIAAQVLVNMGAELP-----AIQQRVMHLLEDGREQEPVSVGPSE---SG 163
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K + + L+QF LT A E +DPVIGRE EI+R++Q+L RRTKNNPIL+
Sbjct: 164 KISG--------SQILDQFGRHLTRAAKEGKLDPVIGREKEIERVMQVLSRRTKNNPILI 215
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ E LA IV +VPV L +K++ SLD+G L+AG++ RG+ E R+ + E
Sbjct: 216 GEPGVGKTAVVEALAQAIVNGDVPVNLRNKQVYSLDLGSLIAGSRYRGDFEERLKKVTKE 275
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+I+FIDE+H+L+G+G+ +D + +LKP L RGELQ I +TT DE+R
Sbjct: 276 IRSRGDIIVFIDEIHSLVGAGSA-----EGAIDAATILKPLLARGELQTIGATTLDEYRK 330
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV +SEPS ++IL GLR++YEAHH K T EAI AAV LS+RYI
Sbjct: 331 NIEKDSALERRFQPVNVSEPSIPMCIQILKGLRDRYEAHHKVKITDEAIYAAVTLSSRYI 390
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDDYWQEIRTVQAMHE 552
+DR+LPDKAIDL+DEAG+R + + R E++ + D ++ Q +
Sbjct: 391 NDRFLPDKAIDLIDEAGARLRLSVLSNPSQLRAVEKKILAVVARKDKAVEK----QDFDK 446
Query: 553 VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
V + R K + A + ++ SA DE IA V + +G+PV ++
Sbjct: 447 VGELKR-KEKALRAELRKIKRDYENGNIASAGTVDEGL------IAEVLASATGVPVFRL 499
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T DE + L+ +E L +RVIGQDEA++++SRA++R+R GLKDPNRP+ + +F GPTGVGK
Sbjct: 500 TEDESVRLMMMERSLHQRVIGQDEAISSLSRAMRRTRAGLKDPNRPSGSFIFAGPTGVGK 559
Query: 673 TELAKSLAACYF 684
TELAK+LA F
Sbjct: 560 TELAKALAEFLF 571
>gi|315656011|ref|ZP_07908909.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
curtisii ATCC 51333]
gi|315490075|gb|EFU79702.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
curtisii ATCC 51333]
Length = 884
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 263/622 (42%), Positives = 376/622 (60%), Gaps = 61/622 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L ++ + T+HLLLGLI E D LE+ GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEARRLNQNYIGTEHLLLGLIHEGDGIAARALETMGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V+ I T +PF+ ++V E ++ + G+N+I EH
Sbjct: 61 AQVIEIIGEGEQPTT-------------GHIPFTPRARKVLEFSMREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG----ELAKEGREPSLAKGVR-EN 253
I LGL DG A +VL +LG D+N++ + L G + + GR+ G R +N
Sbjct: 108 ILLGLLREGDGVAAQVLIKLGADLNNVRQTVIELLSGYQGGQAQQSGRDTVGVGGGRADN 167
Query: 254 SISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN 313
SG +A+ L+QF +LT A E +DPVIGR E++R++QIL RRTKNN
Sbjct: 168 PNSGGNSAI----------LDQFGRNLTQAARESKLDPVIGRTKEMERVMQILSRRTKNN 217
Query: 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373
P+L+GE GVGKTA+ EGLA IV+ +VP L K++ SLDMG L+AG++ RG+ E R+
Sbjct: 218 PVLVGEPGVGKTAVVEGLAQSIVRGDVPETLKDKQLYSLDMGSLVAGSRYRGDFEERLKK 277
Query: 374 LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433
++ EI+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT +
Sbjct: 278 VLKEIRTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTIE 332
Query: 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493
E+R EKD AL RRFQPV + EPS E+ V IL GLR++YE+HH T A+ AA L+
Sbjct: 333 EYRKYIEKDSALERRFQPVKVEEPSVEETVAILKGLRDRYESHHRVMITDAALAAAAQLA 392
Query: 494 ARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEI-----RTVQ 548
RY+SDR+LPDKAIDLVDEAG+R I KR ++ PP+ +E+ +T Q
Sbjct: 393 DRYVSDRFLPDKAIDLVDEAGARLRI---KR--------MTAPPE--LKEVDEKIAKTRQ 439
Query: 549 AMHEVVQGSRLKYDDVVASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
A + + A + D T E + S +D +VV + IA V ++
Sbjct: 440 AKEAAIDAQDFEK---AAQLRDEEKHLTEERAAKESQWRQGEDTSESVVDEEQIAEVLAM 496
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
+GIPV ++T E L+ +E++L KR+IGQD+AV A+S++++R+R GLKDP RP + +
Sbjct: 497 STGIPVFKLTQAESSKLLRMEDELHKRIIGQDDAVKAVSQSIRRTRAGLKDPKRPGGSFV 556
Query: 664 FCGPTGVGKTELAKSLAACYFG 685
F GPTGVGKTELAK+LA FG
Sbjct: 557 FAGPTGVGKTELAKALAEFLFG 578
>gi|239988660|ref|ZP_04709324.1| putative ATP-dependent Clp protease [Streptomyces roseosporus NRRL
11379]
gi|291445649|ref|ZP_06585039.1| ATP-dependent Clp protease [Streptomyces roseosporus NRRL 15998]
gi|411006538|ref|ZP_11382867.1| ATP-dependent Clp protease [Streptomyces globisporus C-1027]
gi|291348596|gb|EFE75500.1| ATP-dependent Clp protease [Streptomyces roseosporus NRRL 15998]
Length = 842
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 370/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSG--GKETAAAGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 434 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKTLAEFLFG 569
>gi|288818874|ref|YP_003433222.1| ATP-dependent Clp protease [Hydrogenobacter thermophilus TK-6]
gi|384129624|ref|YP_005512237.1| ATPase [Hydrogenobacter thermophilus TK-6]
gi|288788274|dbj|BAI70021.1| ATP-dependent Clp protease [Hydrogenobacter thermophilus TK-6]
gi|308752461|gb|ADO45944.1| ATPase AAA-2 domain protein [Hydrogenobacter thermophilus TK-6]
Length = 814
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 368/613 (60%), Gaps = 62/613 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+FE+FTE+A + ++ ++ EA LG + ++H+LL LI ++ P L G+T DK R+
Sbjct: 1 MFEKFTEKARQVILQAREEALELGHTYLGSEHILLALIKDEDLPTIILSKFGLTSDKVRK 60
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
A++ Q S + ++ F+ KRV E AVE +R + F+ PEH+
Sbjct: 61 AIM---------------GQITRGSHSGEILFAPDAKRVLEFAVEEARILHHQFVGPEHL 105
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
+G+ G GR+L+ G+D E S+ + V + I G+
Sbjct: 106 LIGVVREKTGLGGRILRGFGLD---------------------EYSVRREVLQ--ILGEL 142
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+S L++F DLT A E +DPV+GRE EI+R+IQIL RR KNNP+LLG+
Sbjct: 143 PPQESVKYAPTPNLDRFSRDLTQMAREGKLDPVVGREKEIERVIQILVRRRKNNPVLLGD 202
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA RI EVP L +KR+++LD+ L+AG K RG+ E R+ ++ E++
Sbjct: 203 PGVGKTAIVEGLAQRIANREVPEHLQNKRVVALDLAALVAGTKYRGQFEERLKNILKELE 262
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
K+ +VILFIDE+HTL+G+G+ +G+ +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 263 KAPNVILFIDEIHTLVGAGSA----EGS-IDASNMLKPALARGEIQVIGATTLDEYRKYI 317
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPVL+ +PS+EDA++IL GL++K+E HN ++T AI AV LS RYI++
Sbjct: 318 EKDGALERRFQPVLVDQPSEEDAIKILYGLKQKFEEFHNVEYTSSAIEKAVQLSVRYITE 377
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R LPDKAID++DEAGS + ++ PPD E R + E +
Sbjct: 378 RNLPDKAIDVIDEAGSLVKLR-----------AMNLPPDLKALEERIKEIELEKENAANE 426
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAV------VGPDDIAAVASLWSGIPVQQIT 613
+ + A + D E+ + + L S + + V +D+A V S W+GIPV+++
Sbjct: 427 QDYEKAARLRD-EELRLRAKLESLKTKWKQEIAKNRPQVTEEDVAEVVSRWTGIPVKRVH 485
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+ L+ +EE+LKKRVIGQD+A+ A++RA++RSRVGLK +RP LF GPTGVGKT
Sbjct: 486 ESDMEKLLHIEEELKKRVIGQDDAIKAVARAIRRSRVGLKGRHRPIGVFLFLGPTGVGKT 545
Query: 674 ELAKSLAACYFGS 686
E AK+LA FG+
Sbjct: 546 ETAKALAEYLFGT 558
>gi|118472509|ref|YP_890312.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium
smegmatis str. MC2 155]
gi|399990311|ref|YP_006570661.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
smegmatis str. MC2 155]
gi|118173796|gb|ABK74692.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium
smegmatis str. MC2 155]
gi|399234873|gb|AFP42366.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
smegmatis str. MC2 155]
Length = 848
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 362/613 (59%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGG---------R 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGESGNP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAAALRDKEKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|384914741|ref|ZP_10015493.1| Chaperone protein ClpB [Methylacidiphilum fumariolicum SolV]
gi|384527358|emb|CCG91361.1| Chaperone protein ClpB [Methylacidiphilum fumariolicum SolV]
Length = 836
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/632 (39%), Positives = 375/632 (59%), Gaps = 56/632 (8%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLI--AEDRHPNGFLESGITIDKAREAVV 142
FT RA + + +++EA+ G + V T+HLLLGLI A+ N + G+ ++ R +
Sbjct: 4 FTPRAQQVLALARQEAERFGHNHVGTEHLLLGLIKLAQGVAINVLQKLGVDLETVRIEI- 62
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
+ ++GKP + +P++ K+V A + +++ ++++ EHI LG
Sbjct: 63 -------EKKIGSVPSEGKPTTP---IPYTPRVKKVLALASKEAKALNHSYVGTEHILLG 112
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVREN---SISGKT 259
L +G A +LK L +D+ R++ E+ KE A G EN + +G T
Sbjct: 113 LLREGEGVAATILKNLDIDL--------ERVRNEILKELDPNFSASGEEENPEPAFAGTT 164
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
S + AL+ F DLT A +DPVIGR+ EI+R++QILCRRTKNNP+L+GE
Sbjct: 165 ET-TSKKEVKTPALKAFGRDLTELARRGELDPVIGRKNEIERVMQILCRRTKNNPVLIGE 223
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
+GVGKTAI EGLA I VP L KR+++LD+ L++AG K RG+ E R+ ++ EI+
Sbjct: 224 AGVGKTAIVEGLAQEIANENVPDLLRDKRVITLDLALMVAGTKYRGQFEERIKAVMEEIR 283
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
K+ ++ILFIDE+HT++G+G+ +D SN++KP+L RGELQCI +TT E+R
Sbjct: 284 KAKNIILFIDELHTIVGAGSA-----EGAMDASNIIKPALSRGELQCIGATTLSEYRKYI 338
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQ VL+ PS E+ ++IL GL+ KYEAHH KFT +AI+ AV LS RY++
Sbjct: 339 EKDAALERRFQTVLVEAPSVEETIQILHGLKPKYEAHHKAKFTDQAIDTAVRLSDRYLTG 398
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMH-EVVQG 556
R+LPDKAID++DEAG+RA I +PP+ D E+ ++A E ++
Sbjct: 399 RFLPDKAIDIMDEAGARARI-----------AATMRPPELKDLENELLAIRAKKDECIKA 447
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ A++ D + E ++ D++ + DD+ + S W+GIP+ +
Sbjct: 448 QNF---EKAAALRDKERELKEKLEQRIAEWKKRRDEKETTITEDDMMQIVSKWTGIPITR 504
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
IT +++ + + E+L+KRVIGQDEA+ A+SRA++RSR LKDP RP + +F GPTGVG
Sbjct: 505 ITQNDQDKFLNVGEELRKRVIGQDEAIEALSRALQRSRADLKDPKRPIGSFIFLGPTGVG 564
Query: 672 KTELAKSLAACYFGS----VRIHYLFFPSPFN 699
KT LAK+LA FGS ++I + FN
Sbjct: 565 KTMLAKTLAEYVFGSADALIQIDMSEYMEKFN 596
>gi|408826980|ref|ZP_11211870.1| ATPase AAA [Streptomyces somaliensis DSM 40738]
Length = 841
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 370/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSG--GKEAATAGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 434 SAIDAQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKTLAEFLFG 569
>gi|404372678|ref|ZP_10977973.1| hypothetical protein CSBG_00014 [Clostridium sp. 7_2_43FAA]
gi|404301168|gb|EEH96388.2| hypothetical protein CSBG_00014 [Clostridium sp. 7_2_43FAA]
Length = 812
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 251/612 (41%), Positives = 364/612 (59%), Gaps = 51/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLE-SGITIDKARE 139
+F + TERA ++ +Q+E++ + T+H+LLGL+ E + L +G TIDK R+
Sbjct: 2 IFGKLTERAQLVLVEAQKESQYFKHGYIGTEHILLGLLKEGGYAKQVLYINGATIDKVRK 61
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ +D G S +M + TKR+F+ ++ +R +N+I PEHI
Sbjct: 62 LI------------EDYLGFGDIDISVGEMLLNPRTKRLFDDSLVKARIYDHNYINPEHI 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
L L +G A +L L +D+ + + L + +E + AK
Sbjct: 110 LLALLDDTEGVAYTILSTLKLDLKLIKTDISNYLYEKEVEEIKVEEKAK----------K 159
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+K+P L Q+ +LT A E +DPV+GRE E +RI++ILCRR KNNP L+GE
Sbjct: 160 KTVKTP------LLSQYGRNLTMMAKEGKLDPVVGRENENRRILEILCRRIKNNPCLIGE 213
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTA+ EGLA RI+ VP L K I+SLD+ ++AGAK RGE E R+ ++ EI+
Sbjct: 214 PGVGKTAVIEGLAQRIINGNVPEILKDKVIISLDLTSMLAGAKYRGEFEDRLKKVMDEIR 273
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
S D+I+FIDE+HT++G+G G +G +D SN+LKP+L RGE++CI +TT DE+R
Sbjct: 274 NSKDIIIFIDEIHTIVGAG----GAEG-AIDASNILKPALARGEIKCIGATTIDEYRKHI 328
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
E+D AL RRFQPV + EPS+E+ + IL GLRE+YEAHH + EA+ AAV LS RYI+D
Sbjct: 329 ERDSALERRFQPVRVEEPSKEETLDILKGLRERYEAHHMVRIEDEALEAAVELSDRYITD 388
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R++PDKAIDL+DEA ++ IE L+ PPD +++ E + R
Sbjct: 389 RFMPDKAIDLIDEASAKVRIE-----------NLTSPPDIMNLQLQLENNSKEKEEAIRN 437
Query: 560 KYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ + A + D E +++ L S +++ +V + IA V S W+ IP++++T
Sbjct: 438 QNFEKAAELRD-KERQLKNKLNSLKIDLTNNECNNYIVNSEQIAKVVSSWAKIPLEKLTE 496
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ LE+ L KRVIGQ EAV A+S+AV+R+RVGLKDPNRP +FCGPTGVGKTE
Sbjct: 497 QESEKLLQLEDILHKRVIGQKEAVMAVSKAVRRARVGLKDPNRPIGTFIFCGPTGVGKTE 556
Query: 675 LAKSLAACYFGS 686
L+ +LA FG
Sbjct: 557 LSNALAEAMFGD 568
>gi|299821023|ref|ZP_07052911.1| ATPase with chaperone activity, ATP-binding subunit [Listeria grayi
DSM 20601]
gi|299816688|gb|EFI83924.1| ATPase with chaperone activity, ATP-binding subunit [Listeria grayi
DSM 20601]
Length = 821
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 265/642 (41%), Positives = 374/642 (58%), Gaps = 77/642 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFT+RA K + SQ EA L + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTQRAQKVLALSQEEAIRLKHSNLGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + S+ + A G+ + + ++ K+V E +++ +R G+ ++ EHI
Sbjct: 50 LYELEVSSEKVQQEVEALIGEGDKTVTTIQYTPRAKKVIELSMDEARKLGHTYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG--ELAKEGREPSLAKGVRENSISGK 258
LGL +G A RVL LGV +N A V +L G + A GR+ +
Sbjct: 110 LGLIREGEGVAARVLSNLGVSLNK-ARQQVLQLLGSSDAASAGRQTN------------- 155
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
T+A+ L+ DLT A EE +DPVIGR EIQR+I++L RRTKNNP+L+
Sbjct: 156 ---------TQATPTLDSLARDLTVIAREENLDPVIGRAKEIQRVIEVLSRRTKNNPVLI 206
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA +IV+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ E
Sbjct: 207 GEPGVGKTAIAEGLAQQIVKNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDE 266
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+++G+VILFIDE+HTLIG+G G +G +D SN+LKP L RGELQCI +TT DE+R
Sbjct: 267 IRQAGNVILFIDELHTLIGAG----GAEG-AIDASNILKPPLARGELQCIGATTLDEYRK 321
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EP+ +++++IL GLR++YEAHH T A+ AAV LS RYI
Sbjct: 322 YIEKDAALERRFQPVKVDEPTVDESIQILHGLRDRYEAHHRVAITDSALEAAVRLSDRYI 381
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQ----EIRTVQAMHEV 553
SDR+LPDKAID++DEAGS+ ++ + P + Q +
Sbjct: 382 SDRFLPDKAIDVIDEAGSKVRLKAY------------TTPSNVKQMEEELAELKKEKDAA 429
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSAS--------DDDEPAVVGPDDIAAVASLWS 605
VQG + AS+ D + + + + S D +E V D +A V + W+
Sbjct: 430 VQGQEFEK---AASLRDKEQKLKKELEKTKSTWQQKQGMDHNE---VTEDIVAEVVASWT 483
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV ++ E L+ +E+ L +RVIGQ+ AV A+S AV+R+R GLKDP RP + +F
Sbjct: 484 GIPVMKLAETETDKLLNMEKLLHQRVIGQESAVKAVSLAVRRARAGLKDPKRPIGSFIFL 543
Query: 666 GPTGVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GPTGVGKTELA++LA FG +RI + F++ ++
Sbjct: 544 GPTGVGKTELARALAESMFGDEEAMIRIDMSEYMEKFSTARL 585
>gi|390934090|ref|YP_006391595.1| ATPase [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389569591|gb|AFK85996.1| ATPase AAA-2 domain protein [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 810
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 275/634 (43%), Positives = 372/634 (58%), Gaps = 65/634 (10%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKA 137
++F RF+E+A K + +Q EA+SL + V T+H+LLGLI E D + L+S G+T +
Sbjct: 2 AMFGRFSEKAQKVLYQAQEEARSLYHNYVGTEHILLGLIKEEDGIASRVLKSLGVTYEDI 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V S+ N P P KRV E + +R N+I E
Sbjct: 62 RSKVESLIGMGN-----------VPGDVVGYTP---RAKRVLELSFAEARRFNTNYIGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKE-GREPSLAKGVRENSIS 256
HI LGL +G A R+L LGVD N R++ E+ K EPS
Sbjct: 108 HILLGLIREGEGVAVRILMELGVDFN--------RVREEIVKMVSEEPS----------- 148
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
G T + T L QF DLT A E +DPVIGRE EI+R+IQIL RRTKNNP L
Sbjct: 149 GTTNKAQRVKNTNTPNLNQFGRDLTELAREGKLDPVIGREKEIERVIQILSRRTKNNPCL 208
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA I +P L KR+++LDM ++AG K RGE E R+ +++
Sbjct: 209 IGEPGVGKTAIAEGLAEAIESGTIPEILKGKRVVTLDMASMVAGTKYRGEFEDRLKNVLN 268
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
E+ K+G+VILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 269 EVIKAGNVILFIDELHTIIGAGAA-----EGAIDASNILKPALARGEIQVIGATTIDEYR 323
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+++ EPS E+ + IL GLR+KYEAHH K T EAI AA LS RY
Sbjct: 324 KYIEKDPALERRFQPIMVEEPSVEETIEILKGLRDKYEAHHRIKITDEAIEAAAKLSHRY 383
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQA 549
I+DR+LPDKAIDL+DEA SR ++ ++ E + +L+K ++ QE
Sbjct: 384 ITDRFLPDKAIDLIDEAASRVRLKTVTAPPEIKELEDKLNMLNKDKEEAIRTQEYEKAAK 443
Query: 550 MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ + Q + + +++ + S +V E S VG ++I+ + SLW+GIP
Sbjct: 444 IRDEEQKVKEQLENLKSKWQQNS-LVKEKS------------VGAEEISQIVSLWTGIPT 490
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
Q++ +E L+ LEE L KRVIGQDEAV A++RA++R+RVGLKDP RP + +F GPTG
Sbjct: 491 QKLAQEESERLLHLEEILHKRVIGQDEAVDAVARAIRRARVGLKDPKRPIGSFIFLGPTG 550
Query: 670 VGKTELAKSLAACYFGS----VRIHYLFFPSPFN 699
VGKTEL+K+LA FG VRI + F+
Sbjct: 551 VGKTELSKALAEAMFGDESAIVRIDMSEYMEKFS 584
>gi|298345554|ref|YP_003718241.1| chaperone ATPase [Mobiluncus curtisii ATCC 43063]
gi|304391110|ref|ZP_07373062.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
gi|315656114|ref|ZP_07909005.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
gi|298235615|gb|ADI66747.1| ATPase with chaperone activity, ATP-binding subunit [Mobiluncus
curtisii ATCC 43063]
gi|304325993|gb|EFL93239.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
gi|315493116|gb|EFU82716.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
Length = 884
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/622 (42%), Positives = 374/622 (60%), Gaps = 61/622 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L ++ + T+HLLLGLI E D LE+ GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEARRLNQNYIGTEHLLLGLIHEGDGIAARALETMGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V+ I T +PF+ ++V E ++ + G+N+I EH
Sbjct: 61 AQVIEIIGEGEQPTT-------------GHIPFTPRARKVLEFSMREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG----ELAKEGREPSLAKGVR-EN 253
I LGL DG A +VL +LG D+N++ + L G + + GR+ G R +N
Sbjct: 108 ILLGLLREGDGVAAQVLIKLGADLNNVRQTVIELLSGYQGGQSQQSGRDTVGVGGGRADN 167
Query: 254 SISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN 313
+G +A+ L+QF +LT A E +DPVIGR E++R++QIL RRTKNN
Sbjct: 168 PNAGGNSAI----------LDQFGRNLTQAARESKLDPVIGRTKEMERVMQILSRRTKNN 217
Query: 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373
P+L+GE GVGKTA+ EGLA IV+ +VP L K++ SLDMG L+AG++ RG+ E R+
Sbjct: 218 PVLVGEPGVGKTAVVEGLAQSIVRGDVPETLKDKQLYSLDMGSLVAGSRYRGDFEERLKK 277
Query: 374 LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433
++ EI+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +
Sbjct: 278 VLKEIRTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTIE 332
Query: 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493
E+R EKD AL RRFQPV + EPS E+ V IL GLR++YE+HH T A+ AA L+
Sbjct: 333 EYRKYIEKDSALERRFQPVKVEEPSVEETVAILKGLRDRYESHHRVMITDAALAAAAQLA 392
Query: 494 ARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEI-----RTVQ 548
RY+SDR+LPDKAIDLVDEAG+R I KR ++ PP+ +E+ +T Q
Sbjct: 393 DRYVSDRFLPDKAIDLVDEAGARLRI---KR--------MTAPPE--LKEVDEKIAKTRQ 439
Query: 549 AMHEVVQGSRLKYDDVVASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
A + + A + D T E + S +D +VV + IA V ++
Sbjct: 440 AKEAAIDAQDFEK---AAQLRDEEKHLTEERAAKESQWRQGEDTSESVVDEEQIAEVLAM 496
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
+GIPV ++T E L+ +E++L KR+IGQDEAV A+S++++R+R GLKDP RP + +
Sbjct: 497 STGIPVFKLTQAESSKLLRMEDELHKRIIGQDEAVKAVSQSIRRTRAGLKDPKRPGGSFV 556
Query: 664 FCGPTGVGKTELAKSLAACYFG 685
F GPTGVGKTELAK+LA FG
Sbjct: 557 FAGPTGVGKTELAKALAEFLFG 578
>gi|126437706|ref|YP_001073397.1| ATPase [Mycobacterium sp. JLS]
gi|126237506|gb|ABO00907.1| ATPase AAA-2 domain protein [Mycobacterium sp. JLS]
Length = 847
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/613 (41%), Positives = 364/613 (59%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKESAEAGTGG---------R 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGESGNP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|332800110|ref|YP_004461609.1| ATPase AAA-2 domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|438003416|ref|YP_007273159.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB
[Tepidanaerobacter acetatoxydans Re1]
gi|332697845|gb|AEE92302.1| ATPase AAA-2 domain protein [Tepidanaerobacter acetatoxydans Re1]
gi|432180210|emb|CCP27183.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB
[Tepidanaerobacter acetatoxydans Re1]
Length = 813
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 260/615 (42%), Positives = 360/615 (58%), Gaps = 68/615 (11%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAV 141
RFTERA K + ++Q EA+ L ++V T+HLLLGL+ E + G+ DK R V
Sbjct: 4 RFTERAQKVIAYAQEEARRLNHNVVGTEHLLLGLLREGEGVAARALINLGVDADKVRSQV 63
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ PF + ++ KRV E A++ SR G+N++ EHI L
Sbjct: 64 EMMIGVG-------------PFPIQGPIGYTPRAKRVMELAIDESRRLGHNYVGTEHILL 110
Query: 202 GLFTVDDGSAGRVLKRLGVDVNH-----LAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
GL +G A +VL LGV ++ L + S+ QG K P+L
Sbjct: 111 GLIREGEGVAAQVLANLGVSLDKAREEVLNLLVDSKAQGSYKKSANTPTL---------- 160
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
QF DLT A+E +DPV+GRE EI+R+IQ+L RRTKNNP L
Sbjct: 161 -----------------NQFGRDLTELAAEGKLDPVVGREKEIERVIQVLTRRTKNNPCL 203
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+ EGLA +I++ VP L KR++SLDM L+AG K RGE E R+ +++
Sbjct: 204 IGEPGVGKTAVVEGLAQQIIEQNVPEILKDKRVVSLDMASLVAGTKFRGEFEERLKKVMT 263
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+++G+VILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 264 EIKQAGNVILFIDEMHTIIGAGAA-----EGAIDASNILKPALARGEIQTIGATTIDEYR 318
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+++ EP+ E+ ++IL GLR++YEAHH K + EAI AA LS RY
Sbjct: 319 KYVEKDPALERRFQPIMVEEPTVEETIQILKGLRDRYEAHHRVKISDEAIEAAAKLSYRY 378
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQG 556
I+DR+LPDKAIDL+DEA SR ++ L+ PP+ E + E
Sbjct: 379 ITDRFLPDKAIDLIDEAASRVRLK-----------TLTAPPELREMEDKLEAIRKEKDAA 427
Query: 557 SRLKYDDVVASMGDTSEIV---VE--SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
R + + AS+ D + V VE L E + V +DIA + ++W+GIPV++
Sbjct: 428 IRAQEFEKAASLRDKEQEVKAEVEKLKELWQKDYKFENSTVKEEDIAHIVAIWTGIPVKR 487
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L+ LEE L RVIGQDEAV A+++A++R+ GLKDP RP + +F GPTGVG
Sbjct: 488 LTEEESERLLKLEEVLHNRVIGQDEAVKAVAKAIRRAYAGLKDPARPIGSFIFLGPTGVG 547
Query: 672 KTELAKSLAACYFGS 686
KTELA++LA FG
Sbjct: 548 KTELARALADAMFGD 562
>gi|314937170|ref|ZP_07844517.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
hominis subsp. hominis C80]
gi|313655789|gb|EFS19534.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
hominis subsp. hominis C80]
Length = 823
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/624 (41%), Positives = 349/624 (55%), Gaps = 80/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQEHSGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V K + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPEM 147
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 148 NAKNATANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L +KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKNKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI +G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 DEIHHAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EPS ED V IL GLR++YEAHH + EA+ AA LS R
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPSVEDTVAILKGLRDRYEAHHRINISDEALEAAAKLSNR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYW 541
Y+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIEKVKNEKDAAV-------HA 433
Query: 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
QE + + +Y+D S + + +DIA V
Sbjct: 434 QEFENAANLRDKQSKLEKQYEDAKNEW-------------KTSQGGQSTSLSKEDIAEVI 480
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
+ W+GIP+ +I E L+ LEE L RVIGQ++AV +IS+AV+R+R GLKDP RP +
Sbjct: 481 AGWTGIPLTRINETESDRLLNLEETLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGS 540
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 541 FIFLGPTGVGKTELARALAESMFG 564
>gi|15827032|ref|NP_301295.1| ATP-dependent Clp protease [Mycobacterium leprae TN]
gi|221229510|ref|YP_002502926.1| ATP-dependent Clp protease [Mycobacterium leprae Br4923]
gi|13432105|sp|P24428.2|CLPC_MYCLE RecName: Full=Probable ATP-dependent Clp protease ATP-binding
subunit
gi|13092579|emb|CAC29743.1| putative ATP-dependent Clp protease [Mycobacterium leprae]
gi|219932617|emb|CAR70328.1| putative ATP-dependent Clp protease [Mycobacterium leprae Br4923]
Length = 848
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/613 (40%), Positives = 358/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLDSLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V +D QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQV------------EDIIGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVIAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|440705221|ref|ZP_20886021.1| negative regulator of genetic competence ClpC/MecB [Streptomyces
turgidiscabies Car8]
gi|440273037|gb|ELP61838.1| negative regulator of genetic competence ClpC/MecB [Streptomyces
turgidiscabies Car8]
Length = 842
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/618 (41%), Positives = 368/618 (59%), Gaps = 62/618 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKE--GREPSLAKGVRENSIS 256
I LGL +G A +VL +LG D+N + + L G KE G A+G S+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETAGASGGPAEGTPSTSL- 166
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L
Sbjct: 167 ---------------VLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVL 211
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++
Sbjct: 212 IGEPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLK 271
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 272 EIRTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYR 326
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RY
Sbjct: 327 KHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRY 386
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV 554
ISDR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 387 ISDRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRRDKE-- 433
Query: 555 QGSRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGI 607
S + D AS+ D + ++ + A D D A V + IA V + +GI
Sbjct: 434 --SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGI 491
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP
Sbjct: 492 PVFKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGP 551
Query: 668 TGVGKTELAKSLAACYFG 685
+GVGKTEL+K+LA FG
Sbjct: 552 SGVGKTELSKALAEFLFG 569
>gi|350272952|ref|YP_004884260.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Oscillibacter
valericigenes Sjm18-20]
gi|348597794|dbj|BAL01755.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Oscillibacter
valericigenes Sjm18-20]
Length = 816
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 263/612 (42%), Positives = 357/612 (58%), Gaps = 56/612 (9%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG----FLESGITIDKARE 139
+FT RA +A+ Q A LG V T+HLLLGL+ R P+G LE+ D
Sbjct: 5 KFTPRAEEALRLGQEAAGELGHGYVGTEHLLLGLL---REPDGTAHSVLETAGLTDGM-- 59
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+V I + G P + A+ + KRV E AVE S GY+F+ H+
Sbjct: 60 -IVEIIKKS--------VGAGLPGGNPAQ-GLTPRAKRVVELAVEDSARGGYSFVGTAHL 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
GL + A R+L+ GVD L + +L E +G
Sbjct: 110 LAGLLREGNNMAVRILRTAGVDAKQLYTALMQKLN-----------------EAPRAGNR 152
Query: 260 AALKSPGRTRASA----LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+SPG TR + L +F DLTA A +DPVIGR+ EIQR+IQIL RRTKNNP+
Sbjct: 153 EGSRSPGTTRDDSQDKTLREFTRDLTADARSGKLDPVIGRDAEIQRVIQILSRRTKNNPV 212
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA +I +VP LL KRI+SLD+ ++AG K RGE E R+ +
Sbjct: 213 LIGEPGVGKTAIAEGLARKIALGDVPDELLDKRILSLDLSGMVAGTKYRGEFEERIKKAL 272
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
E+++ GDVILFIDE+HT++G+G+ +G +D +N++KP+LGRGE++C+ +TT +E+
Sbjct: 273 DEVKQDGDVILFIDELHTIVGAGSA----EGA-VDAANIIKPALGRGEIRCLGATTLNEY 327
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPSQ+ + IL GLR +YE HH + T A++AAV LSAR
Sbjct: 328 RQYIEKDAALERRFQPVQVGEPSQKATLEILKGLRRRYEQHHRLQITDGALSAAVELSAR 387
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI+DR+LPDKAIDL+DEA SR +E E++ K D+ ++ +A Q
Sbjct: 388 YINDRFLPDKAIDLMDEAASRVRME------EEEPSPELKSLDEKIAALQKDKAAAVAAQ 441
Query: 556 GSR--LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ D+ + + E+ + S P V +DIAAV + W+GIPV ++T
Sbjct: 442 NYEKAAQLRDIEKNYQEQVEMERDKRRKHNS-THRP--VTAEDIAAVVAEWTGIPVTRLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E+QL RV+GQ EAV A+SRA++R RVGLKDP RP + LF GPTGVGKT
Sbjct: 499 EGEESRLLHMEDQLHVRVVGQSEAVTAVSRAIRRGRVGLKDPKRPIGSFLFLGPTGVGKT 558
Query: 674 ELAKSLAACYFG 685
EL K+LA FG
Sbjct: 559 ELCKALAESMFG 570
>gi|152964564|ref|YP_001360348.1| ATPase AAA [Kineococcus radiotolerans SRS30216]
gi|151359081|gb|ABS02084.1| ATPase AAA-2 domain protein [Kineococcus radiotolerans SRS30216]
Length = 851
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/633 (41%), Positives = 378/633 (59%), Gaps = 66/633 (10%)
Query: 64 CNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH 123
+P +RR +FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E
Sbjct: 9 SDPTTREERR-------MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEG 61
Query: 124 PNG-FLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEA 181
LES GI++D RE V I QG+ + + +PF+ K+V E
Sbjct: 62 VAAKALESLGISLDAVREQVQEII------------GQGQQ-APSGHIPFTPRAKKVLEL 108
Query: 182 AVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEG 241
++ + G+N+I EHI LGL +G A +VL +LG D+N + + L G +G
Sbjct: 109 SLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQG 165
Query: 242 REPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQR 301
+EP+ + G +E + SG + L+QF +LT A E +DPVIGR+ +I+R
Sbjct: 166 KEPATSGGPQEGTPSG------------SLVLDQFGRNLTQAAREGKLDPVIGRDPQIER 213
Query: 302 IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361
++Q+L RRTKNNPIL+GE GVGKTA+ EGLA +V+ EVP L K+I +LD+G L+AG+
Sbjct: 214 VMQVLSRRTKNNPILIGEPGVGKTAVVEGLAQSVVRGEVPETLKDKQIYTLDLGALVAGS 273
Query: 362 KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421
+ RG+ E R+ ++ EI+ GD+ILFIDE+HTL+G+G +D +++LKP L R
Sbjct: 274 RYRGDFEERLRKVLKEIRTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLAR 328
Query: 422 GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKF 481
GELQ I +TT DE R EKD AL RRFQP+ + EP+ A+ IL GLR++YEAHH
Sbjct: 329 GELQTIGATTLDEFRKHIEKDPALERRFQPIQVPEPTLAHAIEILKGLRDRYEAHHRVSI 388
Query: 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--D 539
T A+ AA L+ RY++DRYLPDKAIDL+DEAG+R I ++ PPD +
Sbjct: 389 TDAALVAAATLADRYVNDRYLPDKAIDLIDEAGARLRIRR-----------MTAPPDLRE 437
Query: 540 YWQEIRTVQAMHEVVQGSRLKYDDV--VASMGDTSEIVV-----ESSLPSASDDDEPAVV 592
+ + I V+ E S + D AS+ D + ++ + D D A V
Sbjct: 438 FDERIADVRREKE----SAIDAQDFEKAASLRDNEKKLLAQKGEREKQWKSGDMDVIAEV 493
Query: 593 GPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGL 652
+ IA V ++ +GIPV ++T +E L+ +E +L KRVIGQ++A+ A+S+A++R+R GL
Sbjct: 494 DEELIAEVLAVSTGIPVVRLTEEESTRLLNMEAELHKRVIGQNDAIKALSQAIRRTRAGL 553
Query: 653 KDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685
KDP RP + +F GPTGVGKTELAK+LA FG
Sbjct: 554 KDPKRPGGSFIFAGPTGVGKTELAKALAEFLFG 586
>gi|145356586|ref|XP_001422509.1| chaperone, Hsp100 family, ClpC-type [Ostreococcus lucimarinus
CCE9901]
gi|144582752|gb|ABP00826.1| chaperone, Hsp100 family, ClpC-type [Ostreococcus lucimarinus
CCE9901]
Length = 840
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 278/615 (45%), Positives = 380/615 (61%), Gaps = 47/615 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFTE+A+K V+ +Q EA+ LG + V T+ ++LGLI E L+S GI++ +AR
Sbjct: 1 MFERFTEKAIKVVMLAQEEARRLGHNFVGTEQIMLGLIGEGTGIAAKVLKSMGISLKEAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I +G F A ++PF+ KRV E A+E +R G+N+I EH
Sbjct: 61 IEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELALEEARQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A RVL+ L D + + V R+ GE +E +G
Sbjct: 108 LLLGLLREGEGVAARVLENLDADPAKIRS-QVIRMVGE-------------TQEAVGAGA 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ ++ LE+F DLT +A E +DP IGR EI R+ QIL RRTKNNP L+G
Sbjct: 154 GGGQGAQSGSKTPTLEEFGSDLTKKAEEGKLDPCIGRANEIVRVTQILGRRTKNNPCLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGK+AIAEGLA +I +VP L SKR+M+LDMGLL+AG K RGE E R+ L+ E+
Sbjct: 214 EPGVGKSAIAEGLAQKIAANDVPDTLDSKRMMTLDMGLLVAGTKYRGEFEERLKKLMDEV 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 274 KSDENIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTIDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS ++ ++IL GLRE+YE HH K+ +A+ AA S++YIS
Sbjct: 329 IEKDPALERRFQPVQVPEPSVDETIQILRGLRERYELHHKLKYDDDALIAAAKFSSQYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIE---LFKRKKE--QQTCILSKPPDDYWQEIRTVQAMHEV 553
DR+LPDKAIDL+DEAGSR +E L + KE ++ L K D IR+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRVRLENAALPEEAKELDKELKALMKEKD---TAIRSQD--FEA 443
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDE--PAVVGPDDIAAVASLWSGIPVQQ 611
G R + ++ A + +E E + A D P VV DIA + + W+GIPV +
Sbjct: 444 AGGLRDREVELRAQIKQITERKQEENKAKAESGDASGPTVV-EQDIADIVAAWTGIPVDK 502
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+++DE L+ +EE L KR++GQ+EAV A +RA++R+R GLK+PNRP A+ +F GPTGVG
Sbjct: 503 VSSDEGTRLMDMEETLHKRLVGQEEAVVACARAIRRARTGLKNPNRPVASFIFSGPTGVG 562
Query: 672 KTELAKSLAACYFGS 686
K+ELAKSL+A YFGS
Sbjct: 563 KSELAKSLSAFYFGS 577
>gi|374851191|dbj|BAL54159.1| ATPase [uncultured Acidobacteria bacterium]
Length = 792
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/621 (39%), Positives = 369/621 (59%), Gaps = 73/621 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLESGITIDKARE 139
+FER+TE+A + + F++ EA +G + +H+LLGL+ ED+ FL S ++ R+
Sbjct: 1 MFERYTEKARRVIFFARYEASQMGASAIEAEHILLGLLREDKTLAARFLRSPSAVEVIRK 60
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ S + + K +S+ +P S +RV + A E S G+ ++ EH+
Sbjct: 61 EIES-----------RSVIREKVSTSSVDLPLSQEARRVLKYADEESERLGHRYVGTEHL 109
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LG+ ++ A +L G+ + H VRE +
Sbjct: 110 LLGILREENSLAAELLYERGLRLQH-------------------------VREELMRSSV 144
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+ + L +F DLT A + +DP+IGRE E++R+IQILCRRTKNNP L+GE
Sbjct: 145 ERFQQ-AKKETPHLAEFSRDLTEMALADKLDPLIGREAELERVIQILCRRTKNNPCLIGE 203
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA RIV +VP FL +KRI++LD+ L++AG K RG+ E R+ ++ E+
Sbjct: 204 PGVGKTAIVEGLAQRIVAGDVPPFLRNKRIVALDLSLIVAGTKYRGQFEERLKAIMRELI 263
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++ I+FIDE+HTL+G+G+ +G+ LD +N+LKP+L RGE+QCI +TT E R
Sbjct: 264 ENPQYIVFIDELHTLVGAGSA----EGS-LDAANILKPALSRGEIQCIGATTPAEFRRTI 318
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD++L RRFQ V ++ P++E+ +RIL+G++++YEA+H+ ++T EAI AAV+ S RYI+D
Sbjct: 319 EKDRSLERRFQAVKVAPPTEEETIRILMGIKDRYEAYHHVRYTEEAIRAAVYYSNRYITD 378
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQG-SR 558
R+LPDKAID++DEAG+R K Q ++++ P +I H + + SR
Sbjct: 379 RFLPDKAIDVLDEAGARV-------KLRQAATLMNRRPRSSSSDI-----SHFLFRSRSR 426
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAV-VGPDDIAAVASLWSGIPVQQITADER 617
L D+ +DEP V VG +DI V S W+GIPV I +E+
Sbjct: 427 LYTDEWEPDFF----------------EDEPVVDVGREDIEEVISRWTGIPVTSIKEEEQ 470
Query: 618 MLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAK 677
L+ +EE+L KRV+ QD+A++A++RA++RSR GLK+PNRP + LF GPTGVGKTE+A+
Sbjct: 471 QKLLRIEEELHKRVVSQDKAISAVARAIRRSRAGLKNPNRPVGSFLFLGPTGVGKTEVAR 530
Query: 678 SLAACYFGSVRIHYLFFPSPF 698
+LA FGS R F S F
Sbjct: 531 TLAEFLFGSERALIRFDMSEF 551
>gi|257068481|ref|YP_003154736.1| ATPase with chaperone activity, ATP-binding subunit
[Brachybacterium faecium DSM 4810]
gi|256559299|gb|ACU85146.1| ATPase with chaperone activity, ATP-binding subunit
[Brachybacterium faecium DSM 4810]
Length = 879
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/620 (41%), Positives = 370/620 (59%), Gaps = 67/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E+ LE+ G+T+D R
Sbjct: 1 MFERFTDRARRVVVLAQDEARLLNHNYIGTEHILLGLIHENEGVGAKALEALGVTLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I N + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVRDIIGEGNQ-------------TPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G+A +VL RL + + + + RL G +G+EP+ A G E SG
Sbjct: 108 ILLGLLREGEGTAVKVLSRLKAEPSAVRQEVIERLSG---YQGKEPATAGGPSEGQPSG- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE E +R++Q+L RRTKNNP+L+G
Sbjct: 164 -----------SLVLDQFGRNLTQAAREGKLDPVIGRELEAERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGK+A+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKSAVVEGLAQSIVAGDVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLEEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS V IL GLR++YEAHH T A+ AA +L+ RY++
Sbjct: 328 IEKDAALERRFQPIQVDQPSVAHTVEILKGLRDRYEAHHKVTITDAALVAAANLADRYVN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIR---TVQAMHEVVQ 555
DR+LPDKAIDL+DEAG+R I L+ PP+ + R T + E +
Sbjct: 388 DRFLPDKAIDLIDEAGARLRIRR-----------LTAPPELKEFDTRIEETRRKKEEAID 436
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA----------VVGPDDIAAVASLWS 605
G ++ AS+ D E L S D+ E A V + IA V + +
Sbjct: 437 GQDF---ELAASLRDE-----EQKLKSERDEKETAWRHGESDAVTTVSEEVIAEVLAAST 488
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIP+ ++T +E L+ +E++L KRVIGQDEA+ AISRA++R+R GLKDP RP + +F
Sbjct: 489 GIPIVKLTEEESSRLLNMEQELHKRVIGQDEAIKAISRAIRRTRAGLKDPKRPGGSFIFA 548
Query: 666 GPTGVGKTELAKSLAACYFG 685
GPTGVGKTELAK+LA FG
Sbjct: 549 GPTGVGKTELAKALAEFLFG 568
>gi|309810835|ref|ZP_07704636.1| negative regulator of genetic competence ClpC/MecB [Dermacoccus sp.
Ellin185]
gi|308435141|gb|EFP58972.1| negative regulator of genetic competence ClpC/MecB [Dermacoccus sp.
Ellin185]
Length = 874
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/613 (42%), Positives = 373/613 (60%), Gaps = 45/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I QG+ + + +PF+ K+V E ++ G+++I EH
Sbjct: 61 EQVQEII------------GQGQQ-TQSGHIPFTPRAKKVLELSLREGLQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D++ + + L G +G+ A GV +S SG
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLSTVRTTVIQLLSG---YQGKGEPQAAGVGASS-SGG 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A G T L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 PAEGTPAGST---VLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAADIVAGDVPETLKDKHLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+H+L+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 281 RTRGDIILFIDEIHSLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKH 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EP+ A+ IL GLR++YEAHH T A+ AV+++ RYI+
Sbjct: 336 IEKDAALERRFQPIQVNEPTIPQAIEILKGLRDRYEAHHRVTITDAALVGAVNMADRYIT 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R I ++ PP+ ++ ++I V+ E
Sbjct: 396 DRFLPDKAIDLIDEAGARLRIRR-----------MTAPPELREFDEKIVHVRREKESAID 444
Query: 557 SRLKYDDVVASMGD----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
S+ ++ A D E + A D D AV+ + +A V + +GIPV ++
Sbjct: 445 SQ-DFEKAAALRDDERKLVEEKEAKEKEWKAGDVDLAAVLDEELVAEVLAASTGIPVFKL 503
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T +E L+ +E++L KRVIG D+A+ A+S+A++R+R GLKDP RP + +F GPTGVGK
Sbjct: 504 TEEESSRLLRMEDELHKRVIGNDDAIKALSQAIRRTRAGLKDPRRPGGSFIFAGPTGVGK 563
Query: 673 TELAKSLAACYFG 685
TELAKSLA FG
Sbjct: 564 TELAKSLAEFLFG 576
>gi|44417|emb|CAA37573.1| unnamed protein product [Mycobacterium leprae]
Length = 649
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/612 (40%), Positives = 358/612 (58%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLDSLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V +D QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQV------------EDIIGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVIAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|383784475|ref|YP_005469045.1| ATP-dependent Clp protease, ATPase subunit [Leptospirillum
ferrooxidans C2-3]
gi|383083388|dbj|BAM06915.1| ATP-dependent Clp protease, ATPase subunit [Leptospirillum
ferrooxidans C2-3]
Length = 813
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 252/628 (40%), Positives = 384/628 (61%), Gaps = 55/628 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+ ++FTE+ K +I ++ EA+ D + T+H++L L+ E D P L+ G+T ++ R
Sbjct: 1 MMDKFTEKGRKVIIMAREEAEKHQNDYLGTEHIVLALVREQDGIPVSVLKRMGLTPEQIR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + G + ++P + K+V E AV+ +R G+ I EH
Sbjct: 61 ------------MEIERNLLGGTSTLTFGELPLTPRVKKVIEYAVDEARLLGHTHIGSEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LG+ +DG G++L+ LG ++ +A +L L K R NS S K
Sbjct: 109 LLLGVLREEDGIGGKILRALGANL-----MAARQLTASLLK-----------RANSGSAK 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
KS AL+ F DLT A E +DPVIGR EI+R++QIL RR KNNPIL+G
Sbjct: 153 EKERKS----NTPALDDFGRDLTQMAVENQLDPVIGRTEEIERVLQILGRRGKNNPILIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
ESGVGKTAI EGLA +IV EVP LL+KR+++LD+G L+AG K RG+ E R+ ++ E+
Sbjct: 209 ESGVGKTAIVEGLAQKIVAGEVPDNLLNKRVIALDLGSLVAGTKYRGQFEERLKIVMKEV 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+G++I+FIDE+HTL+G+G +G+ +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 269 VTAGNIIIFIDELHTLVGAGAA----EGS-IDASNMLKPALSRGEIQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EP E+A RI++GLR++YE HH + T AI+ AV L+ RY++
Sbjct: 324 IEKDGALKRRFQPIQVNEPPVEEAERIIMGLRDRYEEHHGVQITDAAIHDAVTLAQRYVT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCI--LSKPPDDYWQEIRTVQAMHEVVQG 556
DR+LPDKAID++DEAGSRA ++ F ++ + L + D + IR VQ E V
Sbjct: 384 DRFLPDKAIDIIDEAGSRAKLKSFSLPEDLKGLDQELKRVIRDKEKAIR-VQNFEEAV-- 440
Query: 557 SRLK-YDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
RL+ +DV+ + ++ + + ++P V+GP++I+ + S +GIP+ +I
Sbjct: 441 -RLRSEEDVLKKQSEEEKL----RWKTEQERNKP-VIGPEEISVIVSKMTGIPLYKIEEQ 494
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE ++ +R++GQDEA++AI+R+++RSR G+K RP + +F GPTGVGKTEL
Sbjct: 495 ESQKLLKLESEMHQRIVGQDEAISAIARSIRRSRAGIKGEKRPIGSFIFLGPTGVGKTEL 554
Query: 676 AKSLAACYFGS----VRIHYLFFPSPFN 699
A++LA FG+ +R+ + FN
Sbjct: 555 ARTLAETLFGNEEALIRVDMSEYMERFN 582
>gi|256826231|ref|YP_003150191.1| ATPase with chaperone activity [Kytococcus sedentarius DSM 20547]
gi|256689624|gb|ACV07426.1| ATPase with chaperone activity, ATP-binding subunit [Kytococcus
sedentarius DSM 20547]
Length = 866
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 368/616 (59%), Gaps = 50/616 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQDEARMLNHNYLGTEHILLGLIHEGEGIAAQALENLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V + QGK S + FS K+V E ++ G+ +I EH
Sbjct: 61 EQVQEVI------------GQGKQAPSG-HISFSPRAKKVLELSLREGLQLGHQYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D++ + + L G +G EP A GV SG
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLSTVRQQVIELLSGYQGGQG-EPQ-AAGV---GASGG 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A G + L+QF +LT A E +DPVIGRETEI+R++Q+L RRTKNNP+L+G
Sbjct: 163 QAEGTPAG---SLVLDQFGRNLTQAAREGKLDPVIGRETEIERVMQVLSRRTKNNPVLIG 219
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV VP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 220 EPGVGKTAVVEGLAADIVAGTVPETLKDKHVYTLDLGSLVAGSRYRGDFEERLKKVLKEI 279
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +N+LKP L RGELQ I +TT +E+R
Sbjct: 280 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAANILKPMLARGELQTIGATTLEEYRKH 334
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS A+ IL GLR++YEAHH T A+ +AV+++ RY++
Sbjct: 335 IEKDAALERRFQPIQVNEPSLAHAIEILKGLRDRYEAHHRVSITDGALASAVNMADRYVN 394
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQ 555
DR+LPDKAIDL+DEAG+R I+ ++ PPD + ++I V+ E +
Sbjct: 395 DRFLPDKAIDLIDEAGARLRIQR-----------MTAPPDLREIDEKIANVRREKESAID 443
Query: 556 GSRLKYDDVVASMGDTSEIVVE-----SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
G + AS+ D + ++ D D AVV D IA V + +GIPV
Sbjct: 444 GQDFEK---AASLRDDEQKLLNERGEREKAWKEGDQDVAAVVDEDVIAEVLAATTGIPVF 500
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
+I+ +E L+ +E++L KR++G D+A+ A+S+A++R+R GLKDP RP + +F GPTGV
Sbjct: 501 RISEEESSRLLKMEDELHKRIVGMDDAIHALSQAIRRTRAGLKDPRRPGGSFIFAGPTGV 560
Query: 671 GKTELAKSLAACYFGS 686
GKTELAK+LA FG
Sbjct: 561 GKTELAKALAEFLFGD 576
>gi|402833447|ref|ZP_10882064.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
CM52]
gi|402280486|gb|EJU29193.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
CM52]
Length = 839
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 268/610 (43%), Positives = 363/610 (59%), Gaps = 44/610 (7%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVS 143
RFT RA+K + F+Q EA+ L ++ + T+H+LLGL+ E GI R +
Sbjct: 4 RFTGRALKVLEFAQYEAQELEQNFIGTEHILLGLLHEG--------EGIAARALRSLGLD 55
Query: 144 IWH-STNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
H T +D G+ ++ KRV E AVE +RS G+N+I EHI LG
Sbjct: 56 FGHVRTRVEDM----LGGREMEERRASYYTDRAKRVMELAVEEARSFGHNYIGTEHILLG 111
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGRE-PSLAKGVRENSISGKTAA 261
L ++G A VL LG D++ + A + L G E E P+ + R + + AA
Sbjct: 112 LIRENEGVAAHVLISLGADLDIVRATVIDMLGG--THESAELPAPDRRRRATTPAQGEAA 169
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
+P L+++ D+ A E +DPVIGRE EI+R++QIL RRTKNNPIL+GE G
Sbjct: 170 ASTP------LLDKYGRDINRMAREGKLDPVIGREKEIERVVQILSRRTKNNPILIGEPG 223
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTA+AEGLA RI VP L KRI+SL M L+AGAK RGE E R+ +I E+ KS
Sbjct: 224 VGKTAVAEGLAARIATGAVPRLLQQKRIVSLPMAGLVAGAKYRGEFEERLKGIIDEVMKS 283
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G+VILFIDE+HTLIG+G +G+ LD +N+LKP L RGE+Q I +TT E++ FEK
Sbjct: 284 GNVILFIDEMHTLIGAGAA----EGS-LDAANILKPPLSRGEVQIIGATTLKEYKKYFEK 338
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQ +L+ EP+ E+A +IL GLR KYEA H+ K EA+ AAV LS RYI DR
Sbjct: 339 DSALERRFQSILVEEPTTEEAEKILHGLRPKYEAFHHAKIRDEALKAAVRLSHRYIPDRC 398
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561
LPDKAIDL+DEA S++ + +T +L P E R + E +L+
Sbjct: 399 LPDKAIDLMDEAASKSRM---------KTVVL--PTSIKRLEERLKKLGVEKDTAIKLQD 447
Query: 562 DDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
+ A++ D E ++ L +A + + + V DDIA LW+GIPV+ I A E
Sbjct: 448 YERAAALRD-EESALKEDLAAAKERWQEREMKEVTVTADDIADAVGLWTGIPVKDIAAKE 506
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ LE+ L V+GQ+EAV A+++AV+R+R GLKDP RP + LF G TGVGKTELA
Sbjct: 507 SERLLHLEQILTAHVVGQEEAVTAVAKAVRRARAGLKDPKRPIGSFLFLGSTGVGKTELA 566
Query: 677 KSLAACYFGS 686
++LA FG+
Sbjct: 567 RALAESLFGT 576
>gi|229083400|ref|ZP_04215749.1| Negative regulator of genetic competence [Bacillus cereus Rock3-44]
gi|228699909|gb|EEL52545.1| Negative regulator of genetic competence [Bacillus cereus Rock3-44]
Length = 811
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 261/610 (42%), Positives = 365/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ + + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEMSQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEATSGHQ------------GGASA 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVAREGRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++++IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETNKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|375139363|ref|YP_005000012.1| chaperone ATPase [Mycobacterium rhodesiae NBB3]
gi|359819984|gb|AEV72797.1| ATPase with chaperone activity, ATP-binding subunit [Mycobacterium
rhodesiae NBB3]
Length = 847
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/613 (41%), Positives = 363/613 (59%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKE---------TAEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGEAGNP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T AI AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDPAIVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|239636922|ref|ZP_04677920.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
warneri L37603]
gi|239597470|gb|EEQ79969.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
warneri L37603]
Length = 817
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/617 (41%), Positives = 354/617 (57%), Gaps = 66/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + A + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQAPMATLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V K + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPEM 147
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 148 SNKNAQANKSNNT--PTLDGLARDLTIIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L +KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKNKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EP+ ED V IL GLR++YEAHH + EA+ AA LS R
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPTVEDTVSILKGLRDRYEAHHRINISDEALEAAAKLSHR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQ 548
Y+SDR+LPDKAIDL+DEA S+ ++ ++ EQQ + D + QE
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQQIEKVKNEKDAAVHAQEFENAA 440
Query: 549 AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ + +Y++ ++ + V S + +DIA V + W+GIP
Sbjct: 441 NLRDKQTKLEKQYEEAKNEWKNSQDGVSTS-------------LSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTRINETESDRLLNLEDTLHHRVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTELA++LA FG
Sbjct: 548 GVGKTELARALAESMFG 564
>gi|38234547|ref|NP_940314.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae NCTC 13129]
gi|38200810|emb|CAE50514.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae]
Length = 883
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/617 (41%), Positives = 362/617 (58%), Gaps = 40/617 (6%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKA 137
++FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++
Sbjct: 5 NMFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAV 64
Query: 138 REAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
R+ V I H + A +PF+ K+V E ++ G+ +I
Sbjct: 65 RQEVEEIIGHGSE--------------PPAGHIPFTPRAKKVLELSLREGLQMGHKYIGT 110
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS--LAKGVRENS 254
E + LGL DG A +VL +LG D+ + + L G E E +
Sbjct: 111 EFLLLGLIREGDGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGESPENNNEGEAVGAGTG 170
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+ R+ + L+QF +LT A E +DPV+GRE EI+RI+Q+L RRTKNNP
Sbjct: 171 AGRAGRGGGAGERSNSLVLDQFGRNLTQAAKEGKLDPVVGREQEIERIMQVLSRRTKNNP 230
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ +
Sbjct: 231 VLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQVYSLDLGSLVAGSRYRGDFEERLKKV 290
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE
Sbjct: 291 LKEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDE 345
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS + + IL GLR++YEAHH T A+ AA LS
Sbjct: 346 YRKHIEKDAALERRFQPVQVPEPSVDMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSD 405
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI+DR+LPDKA+DL+DEAG+R I KR ++ + DD E+R +
Sbjct: 406 RYINDRFLPDKAVDLIDEAGARMRI---KRMTAPESI---RKVDDQIAEVRREKEAAIDA 459
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPV 609
Q + A + DT + E + D ++ A VG + IA V W+GIPV
Sbjct: 460 QDF-----EKAAGLRDTERKLGEERAEKEKQWRSGDLEDIAEVGEEQIAEVLGNWTGIPV 514
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +EE+L KR+IGQD+AV ++SRA++R+R GLKDP RP+ + +F GP+G
Sbjct: 515 FKLTEEESSRLLHMEEELHKRIIGQDDAVKSVSRAIRRTRAGLKDPRRPSGSFIFAGPSG 574
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+KSLA FG
Sbjct: 575 VGKTELSKSLANFLFGD 591
>gi|418619636|ref|ZP_13182459.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
hominis VCU122]
gi|374824202|gb|EHR88173.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
hominis VCU122]
Length = 823
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/624 (41%), Positives = 350/624 (56%), Gaps = 80/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V ++ G + + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVENLI--------------GHGQEHSGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V K + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPEM 147
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 148 NTKNATANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L +KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKNKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI +G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 DEIHHAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EPS ED V IL GLR++YEAHH + EA+ AA LS R
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPSVEDTVAILKGLRDRYEAHHRINISDEALEAAAKLSNR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYW 541
Y+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIEKVKNEKDAAV-------HA 433
Query: 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
QE + + +Y+D S + + +DIA V
Sbjct: 434 QEFENAANLRDKQSKLEKQYEDAKNEW-------------KTSQGGQSTSLSKEDIAEVI 480
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
+ W+GIP+ +I E L+ LEE L RVIGQ++AV +IS+AV+R+R GLKDP RP +
Sbjct: 481 AGWTGIPLTRINETESDRLLNLEETLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGS 540
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 541 FIFLGPTGVGKTELARALAESMFG 564
>gi|390936556|ref|YP_006394115.1| putative ATP-dependent Clp protease ATP-binding subunit
[Bifidobacterium bifidum BGN4]
gi|389890169|gb|AFL04236.1| putative ATP-dependent Clp protease ATP-binding subunit
[Bifidobacterium bifidum BGN4]
Length = 858
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/612 (41%), Positives = 366/612 (59%), Gaps = 45/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+T+D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVTLDDTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N AA G +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGN------AAPNGH-------IPFTPHAKQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + + + G G + KG N+ G
Sbjct: 108 ILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIHG---NSGGANASGKGDLANA--GG 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+S +T ++ L+QF +LTA A+E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 163 VQDKRS--QTGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKINAGDVPETLKDKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ +A LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR LPDKAIDL+DEAG+R I KR L+ PP+ + + + E + +
Sbjct: 396 DRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDQKVAKVAAEKDKAIK 444
Query: 559 LKYDDVVASMGDTSEIV------VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + A + D E + ESS D E VV D IA V S +GIPV ++
Sbjct: 445 DQDFEKAAELRDNQEKLEAERKEKESSWREGESDVE-MVVNEDVIAQVISSTTGIPVFKL 503
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+G+E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP + +F GPTGVGK
Sbjct: 504 TQAESKKLLGMESELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPAGSFIFAGPTGVGK 563
Query: 673 TELAKSLAACYF 684
TELAK+LA F
Sbjct: 564 TELAKALAEFLF 575
>gi|310287202|ref|YP_003938460.1| ATP-dependent clp protease [Bifidobacterium bifidum S17]
gi|311064064|ref|YP_003970789.1| genetic competence regulator ClpC [Bifidobacterium bifidum PRL2010]
gi|421734040|ref|ZP_16173129.1| genetic competence regulator ClpC [Bifidobacterium bifidum LMG
13195]
gi|421737399|ref|ZP_16176009.1| genetic competence regulator ClpC [Bifidobacterium bifidum IPLA
20015]
gi|309251138|gb|ADO52886.1| ATP-dependent clp protease [Bifidobacterium bifidum S17]
gi|310866383|gb|ADP35752.1| ClpC Negative regulator of genetic competence [Bifidobacterium
bifidum PRL2010]
gi|407078036|gb|EKE50853.1| genetic competence regulator ClpC [Bifidobacterium bifidum LMG
13195]
gi|407295316|gb|EKF15088.1| genetic competence regulator ClpC [Bifidobacterium bifidum IPLA
20015]
Length = 858
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/612 (41%), Positives = 366/612 (59%), Gaps = 45/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+T+D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVTLDDTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N AA G +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGN------AAPNGH-------IPFTPHAKQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + + + G G + KG N+ G
Sbjct: 108 ILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIHG---NSGGANASGKGDLANA--GG 162
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+S +T ++ L+QF +LTA A+E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 163 VQDKRS--QTGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKINAGDVPETLKDKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ +A LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR LPDKAIDL+DEAG+R I KR L+ PP+ + + + E + +
Sbjct: 396 DRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDQKVAKVAAEKDKAIK 444
Query: 559 LKYDDVVASMGDTSEIV------VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + A + D E + ESS D E VV D IA V S +GIPV ++
Sbjct: 445 DQDFEKAAELRDNQEKLEAERKEKESSWREGESDVE-MVVNEDVIAQVISSTTGIPVFKL 503
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+G+E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP + +F GPTGVGK
Sbjct: 504 TQAESKKLLGMESELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPAGSFIFAGPTGVGK 563
Query: 673 TELAKSLAACYF 684
TELAK+LA F
Sbjct: 564 TELAKALAEFLF 575
>gi|257057497|ref|YP_003135329.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora viridis DSM 43017]
gi|256587369|gb|ACU98502.1| ATPase with chaperone activity, ATP-binding subunit
[Saccharomonospora viridis DSM 43017]
Length = 851
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/618 (41%), Positives = 374/618 (60%), Gaps = 60/618 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG---YQGKEPAEA----------- 153
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A + G +S L+QF +LTA A E +DPVIGR EI+R++Q+L RRTKNNP+L+
Sbjct: 154 -GAGRGEGTPSSSLVLDQFGRNLTAAAREGKLDPVIGRSKEIERVMQVLSRRTKNNPVLI 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 213 GEPGVGKTAVVEGLAQNIVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 273 IKTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLEEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ AA L+ RYI
Sbjct: 328 YIEKDAALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDSALAAAATLADRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV- 554
+DRYLPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E
Sbjct: 388 NDRYLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEVRREKESAI 436
Query: 555 ------QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ +RL+ D+ +G +E D D A V + IA V + W+GIP
Sbjct: 437 DAQDFERAARLR-DEEKTLLGQKAE---REKQWKDGDLDVVAEVDDEQIAEVLANWTGIP 492
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T +E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+
Sbjct: 493 VFKLTEEETTRLLRMEEELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPS 552
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL+K+LA FG
Sbjct: 553 GVGKTELSKALANFLFGE 570
>gi|384190952|ref|YP_005576700.1| Negative regulator of genetic competence clpC/mecB [Bifidobacterium
animalis subsp. lactis BB-12]
gi|384192096|ref|YP_005577843.1| Negative regulator of genetic competence clpC/mecB [Bifidobacterium
animalis subsp. lactis CNCM I-2494]
gi|289178444|gb|ADC85690.1| Negative regulator of genetic competence clpC/mecB [Bifidobacterium
animalis subsp. lactis BB-12]
gi|340364833|gb|AEK30124.1| Negative regulator of genetic competence clpC/mecB [Bifidobacterium
animalis subsp. lactis CNCM I-2494]
Length = 862
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/614 (41%), Positives = 374/614 (60%), Gaps = 46/614 (7%)
Query: 79 SSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDK 136
+S+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E D LE+ G+T++
Sbjct: 11 TSMFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGDGVAAKALEAKGVTLED 70
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
R+ V + AA G +PF+ K+V E ++ + G+++I
Sbjct: 71 TRKQVEEMIGKGT------AAPTGH-------IPFTPHAKQVLELSLREALQLGHSYIGT 117
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAK-EGREPSLAKGVRENSI 255
EHI LGL +G +VL ++ VD++ L + + ++G EG + +A S+
Sbjct: 118 EHILLGLIREGEGVGTQVLIKMDVDLSDLRSTTIDMIRGNSGNGEGDKGDMANA---GSV 174
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
K + ++ ++ L+QF +LTA A + +DPVIGR TEI+R++ +L RRTKNNP+
Sbjct: 175 QDKRS------QSGSAILDQFGRNLTAEAKDGKLDPVIGRSTEIERVMVVLSRRTKNNPV 228
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA +IV +VP L K++ SLD+G ++AG++ RG+ E R+ ++
Sbjct: 229 LIGEPGVGKTAVVEGLAQKIVAGDVPETLKDKQVYSLDLGSMVAGSRYRGDFEERLKKVL 288
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+
Sbjct: 289 KEIKTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEY 343
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ +SEPS + + IL GLR +YE HH+ T A+ +A LSAR
Sbjct: 344 RKYIEKDAALERRFQPIQVSEPSIAETIEILKGLRARYENHHHVTITDGALQSAAELSAR 403
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI DR LPDKAIDL+DEAG+R I KR L+ PP+ + R + E Q
Sbjct: 404 YIQDRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDNRIARIAKEKDQ 452
Query: 556 GSRLKYDDVVASMGDTSE-IVVESSLPSAS----DDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ + + A + D E + E S + D VV D IA V S +GIPV
Sbjct: 453 TIKDQQFEKAAELRDKQEKLEAERKEKEKSWREGESDVRMVVDEDVIAEVISQSTGIPVF 512
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T E L+ +E++L KR+IGQDEAV+A+SR+++R+RVGLKDP RP + +F GPTGV
Sbjct: 513 KLTQAESKKLMSMEKELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPAGSFIFAGPTGV 572
Query: 671 GKTELAKSLAACYF 684
GKTELAK+LA F
Sbjct: 573 GKTELAKALAQFLF 586
>gi|304315908|ref|YP_003851053.1| ATPase AAA [Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302777410|gb|ADL67969.1| ATPase AAA-2 domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 810
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 275/632 (43%), Positives = 371/632 (58%), Gaps = 61/632 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKA 137
++F RF+E+A K + +Q EA+SL + V T+H+LLGLI E D + L++ G+T D
Sbjct: 2 AMFGRFSEKAQKVLYQAQEEARSLYHNYVGTEHILLGLIKEEDGIASRVLKNLGVTYDDI 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V ++ N P P KRV E + +R N+I E
Sbjct: 62 RAKVETLIGMGN-----------VPGDVVGYTP---RAKRVLELSFAEARRFNTNYIGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKE-GREPSLAKGVRENSIS 256
HI LGL +G A R+L LGVD N R++ E+ K EPS
Sbjct: 108 HILLGLIREGEGVAVRILMELGVDFN--------RVREEIVKMVSEEPS----------- 148
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
G + T L QF DLT A E +DPVIGRE EI+R+IQIL RRTKNNP L
Sbjct: 149 GAANKAQRAKNTNTPNLNQFGRDLTDLAREGKLDPVIGREKEIERVIQILSRRTKNNPCL 208
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA I +P L KR+++LDM ++AG K RGE E R+ +++
Sbjct: 209 IGEPGVGKTAIAEGLAEAIESGTIPEILKGKRVVTLDMASMVAGTKYRGEFEDRLKNVLN 268
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
E+ K+G+VILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 269 EVIKAGNVILFIDELHTIIGAGAA-----EGAIDASNILKPALARGEIQVIGATTIDEYR 323
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+++ EPS E+ + IL GLR+KYEAHH K T EAI AA LS RY
Sbjct: 324 KYIEKDPALERRFQPIMVEEPSVEETIEILKGLRDKYEAHHRVKITDEAIEAAAKLSHRY 383
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDDYWQEIRTVQAMH 551
I+DRYLPDKAIDL+DEA SR ++ ++ E++ +L+K D + IRT + +
Sbjct: 384 ITDRYLPDKAIDLIDEAASRVRLKTVTAPPEIKELEEKLNMLNK---DKEEAIRTQE--Y 438
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
E R + + + + ++SL VG ++I+ + SLW+GIP Q+
Sbjct: 439 EKAAKIRDEEQKIKEQLENLKSKWQQNSLVKDKS------VGAEEISQIVSLWTGIPTQK 492
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ +E L+ LEE L KRVIGQDEAV A++RA++R+RVGLKDP RP + +F GPTGVG
Sbjct: 493 LAQEESERLLHLEEILHKRVIGQDEAVDAVARAIRRARVGLKDPRRPIGSFIFLGPTGVG 552
Query: 672 KTELAKSLAACYFGS----VRIHYLFFPSPFN 699
KTEL+K+LA FG VRI + F+
Sbjct: 553 KTELSKALAEAMFGDESAIVRIDMSEYMEKFS 584
>gi|269793848|ref|YP_003313303.1| chaperone ATPase [Sanguibacter keddieii DSM 10542]
gi|269096033|gb|ACZ20469.1| ATPase with chaperone activity, ATP-binding subunit [Sanguibacter
keddieii DSM 10542]
Length = 858
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/620 (41%), Positives = 368/620 (59%), Gaps = 65/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I Q P + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVTEII----------GEGQQAP---SGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP + E + +G
Sbjct: 108 ILLGLIREGEGVAAQVLTKLGADLNRVRQQVIQLLSG---YQGKEPVASGAPAEGTPAG- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ L+QF +LT A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 -----------SAVLDQFGRNLTQAAREGKLDPVIGRAKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQDIVSGDVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV ++EPS A+ IL GLR++YEAHH T A+ AA L+ RY++
Sbjct: 328 IEKDAALERRFQPVQVAEPSLPHAIEILKGLRDRYEAHHRVSITDSALVAAATLADRYVN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDLVDEAG+R I ++ PP E+R + ++ + R
Sbjct: 388 DRFLPDKAIDLVDEAGARLRIRR-----------MTAPP-----ELRELD--EQIAEARR 429
Query: 559 LKYDDV-------VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSG 606
K + A + DT + + + + D D A V + IA V ++ +G
Sbjct: 430 NKESAIDEQDFEKAAGLRDTEKQLTQQRADKEKAWKSGDLDTVAEVDEELIAEVLAMSTG 489
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T +E L+ +E++L KRV+GQD A+ +S+A++R+R GLKDP RP + +F G
Sbjct: 490 IPVFKLTEEESSRLLKMEDELHKRVVGQDIAIKGLSQAIRRTRAGLKDPKRPGGSFIFAG 549
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAK+LA FG
Sbjct: 550 PTGVGKTELAKALAEFLFGD 569
>gi|376252008|ref|YP_005138889.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae HC03]
gi|372113512|gb|AEX79571.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae HC03]
Length = 878
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/616 (41%), Positives = 361/616 (58%), Gaps = 40/616 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + A +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPAGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS--LAKGVRENSI 255
+ LGL DG A +VL +LG D+ + + L G E E +
Sbjct: 107 FLLLGLIREGDGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGESPENNNDGEAVGAGTGA 166
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ R+ + L+QF +LT A E +DPV+GRE EI+RI+Q+L RRTKNNP+
Sbjct: 167 GRAGRGGGAGERSNSLVLDQFGRNLTQAAKEGKLDPVVGREQEIERIMQVLSRRTKNNPV 226
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ ++
Sbjct: 227 LIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQVYSLDLGSLVAGSRYRGDFEERLKKVL 286
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE+
Sbjct: 287 KEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDEY 341
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS + + IL GLR++YEAHH T A+ AA LS R
Sbjct: 342 RKHIEKDAALERRFQPVQVPEPSVDMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSDR 401
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI+DR+LPDKA+DL+DEAG+R I KR ++ + DD E+R + Q
Sbjct: 402 YINDRFLPDKAVDLIDEAGARMRI---KRMTAPESI---RKVDDQIAEVRREKEAAIDAQ 455
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ A + DT + E + D ++ A VG + IA V W+GIPV
Sbjct: 456 DF-----EKAAGLRDTERKLGEERAEKEKQWRSGDLEDIAEVGEEQIAEVLGNWTGIPVF 510
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L+ +EE+L KR+IGQD+AV ++SRA++R+R GLKDP RP+ + +F GP+GV
Sbjct: 511 KLTEEESSRLLHMEEELHKRIIGQDDAVKSVSRAIRRTRAGLKDPRRPSGSFIFAGPSGV 570
Query: 671 GKTELAKSLAACYFGS 686
GKTEL+KSLA FG
Sbjct: 571 GKTELSKSLANFLFGD 586
>gi|169830065|ref|YP_001700223.1| negative regulator of genetic competence clpC/mecB [Lysinibacillus
sphaericus C3-41]
gi|168994553|gb|ACA42093.1| Negative regulator of genetic competence clpC/mecB [Lysinibacillus
sphaericus C3-41]
Length = 813
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 269/615 (43%), Positives = 374/615 (60%), Gaps = 61/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFT+RA K + +Q EA + + T+H+LLGLI E G KA EA
Sbjct: 1 MFNRFTQRAQKVLQLAQEEAIRWKHESIGTEHILLGLIRE---------GGGIAAKALEA 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ I ++ +GK + ++ K+V E +V+ SR G+++I EH+
Sbjct: 52 I-DISPQMIEAGIEELVGKGKE-DVGPIVHYTPRAKKVIELSVDESRKLGHSYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L L +G A RVL GV +N K ++ L G +N+ SG+ A
Sbjct: 110 LALIREGEGVAARVLNNAGVGLN---------------KARQQVLLLLGNNDNAQSGQQA 154
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
A + T L+ DLT A E +DPVIGR EI R+I++L RRTKNNP+L+GE
Sbjct: 155 AQAANTPT----LDSLARDLTQIAREGTLDPVIGRSKEITRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEGA-IDASNILKPSLARGELQCIGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E+A+ I+ GLR++YEAHH K T EAI AA + RYISDR
Sbjct: 326 KDAALERRFQPIQVDEPTVEEAILIIQGLRDRYEAHHRVKITDEAIEAAAKMGDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAMHEVVQ 555
+LPDKAIDL+DEAGS+ + F + PP +D + +R+ + + V
Sbjct: 386 FLPDKAIDLIDEAGSKVRLRSF-----------AVPPNLKALEDKLENVRSEK--NAAVS 432
Query: 556 GSRLKYDDVVASMGDTSEIV---VESSLPSASDDDEPA--VVGPDDIAAVASLWSGIPVQ 610
G + A++ DT + + +E++ + ++ A V DD+AAV S+W+GIPV
Sbjct: 433 GQEFEK---AAALRDTEQKLKDEIEATRKNWKEEQGKAESKVTVDDVAAVVSMWTGIPVA 489
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
+I ++E L+ LEE+L KRV+GQ EAV AISRA++R+R GLKDP RP + +F GPTGV
Sbjct: 490 KIASEESSKLLQLEEELHKRVVGQGEAVEAISRAIRRARAGLKDPKRPIGSFIFLGPTGV 549
Query: 671 GKTELAKSLAACYFG 685
GKTELA++LA FG
Sbjct: 550 GKTELARALAEVMFG 564
>gi|228475267|ref|ZP_04059992.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
hominis SK119]
gi|228270732|gb|EEK12141.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
hominis SK119]
Length = 823
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 260/624 (41%), Positives = 359/624 (57%), Gaps = 80/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQEHSGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L D+N +++ + ++ K P + +N+
Sbjct: 105 TEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMNT---KNAT 153
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ K+ L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 154 ANKS--------NNTPTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L +KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKNKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI +G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 DEIHHAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EPS ED V IL GLR++YEAHH + EA+ +A LS R
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPSVEDTVAILKGLRDRYEAHHRINISDEALESAAKLSNR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYW 541
Y+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIEKVKNEKDAAV-------HA 433
Query: 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
QE + + +Y+D S TS+ +SL +DIA V
Sbjct: 434 QEFENAANLRDKQSKLEKQYED-AKSEWKTSQGGQSTSLSK------------EDIAEVI 480
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
+ W+GIP+ +I E L+ LEE L RVIGQ++AV +IS+AV+R+R GLKDP RP +
Sbjct: 481 AGWTGIPLTRINETESDRLLNLEETLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGS 540
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 541 FIFLGPTGVGKTELARALAESMFG 564
>gi|126653478|ref|ZP_01725571.1| ATP-dependent Clp protease ATPase subunit [Bacillus sp. B14905]
gi|126589756|gb|EAZ83890.1| ATP-dependent Clp protease ATPase subunit [Bacillus sp. B14905]
Length = 814
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 269/615 (43%), Positives = 374/615 (60%), Gaps = 61/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFT+RA K + +Q EA + + T+H+LLGLI E G KA EA
Sbjct: 2 MFNRFTQRAQKVLQLAQEEAIRWKHESIGTEHILLGLIRE---------GGGIAAKALEA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ I ++ +GK + ++ K+V E +V+ SR G+++I EH+
Sbjct: 53 I-DISPQMIEAGIEELVGKGKE-DVGPIVHYTPRAKKVIELSVDESRKLGHSYIGTEHLL 110
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L L +G A RVL GV +N K ++ L G +N+ SG+ A
Sbjct: 111 LALIREGEGVAARVLNNAGVGLN---------------KARQQVLLLLGNNDNAQSGQQA 155
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
A + T L+ DLT A E +DPVIGR EI R+I++L RRTKNNP+L+GE
Sbjct: 156 AQAANTPT----LDSLARDLTQIAREGTLDPVIGRSKEITRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEGA-IDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E+A+ I+ GLR++YEAHH K T EAI AA + RYISDR
Sbjct: 327 KDAALERRFQPIQVDEPTVEEAILIIQGLRDRYEAHHRVKITDEAIEAAAKMGDRYISDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAMHEVVQ 555
+LPDKAIDL+DEAGS+ + F + PP +D + +R+ + + V
Sbjct: 387 FLPDKAIDLIDEAGSKVRLRSF-----------AVPPNLKALEDKLENVRSEK--NAAVS 433
Query: 556 GSRLKYDDVVASMGDTSEIV---VESSLPSASDDDEPA--VVGPDDIAAVASLWSGIPVQ 610
G + A++ DT + + +E++ + ++ A V DD+AAV S+W+GIPV
Sbjct: 434 GQEFEK---AAALRDTEQKLKDEIEATRKNWKEEQGKAESKVTVDDVAAVVSMWTGIPVA 490
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
+I ++E L+ LEE+L KRV+GQ EAV AISRA++R+R GLKDP RP + +F GPTGV
Sbjct: 491 KIASEESSKLLQLEEELHKRVVGQGEAVEAISRAIRRARAGLKDPKRPIGSFIFLGPTGV 550
Query: 671 GKTELAKSLAACYFG 685
GKTELA++LA FG
Sbjct: 551 GKTELARALAEVMFG 565
>gi|169627650|ref|YP_001701299.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
abscessus ATCC 19977]
gi|420862333|ref|ZP_15325729.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 4S-0303]
gi|420866918|ref|ZP_15330305.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 4S-0726-RA]
gi|420876221|ref|ZP_15339597.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 4S-0726-RB]
gi|420913205|ref|ZP_15376517.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 6G-0125-R]
gi|420919524|ref|ZP_15382823.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 6G-0728-S]
gi|420925292|ref|ZP_15388581.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 6G-1108]
gi|420964834|ref|ZP_15428051.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 3A-0810-R]
gi|420975640|ref|ZP_15438826.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 6G-0212]
gi|420981019|ref|ZP_15444192.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 6G-0728-R]
gi|421005578|ref|ZP_15468696.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 3A-0119-R]
gi|421011064|ref|ZP_15474163.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 3A-0122-R]
gi|421016167|ref|ZP_15479237.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 3A-0122-S]
gi|421021609|ref|ZP_15484661.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 3A-0731]
gi|421027390|ref|ZP_15490429.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 3A-0930-R]
gi|421039150|ref|ZP_15502161.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 4S-0116-R]
gi|421046568|ref|ZP_15509568.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 4S-0116-S]
gi|169239617|emb|CAM60645.1| Probable ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus]
gi|392067696|gb|EIT93544.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 4S-0726-RB]
gi|392075249|gb|EIU01083.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 4S-0726-RA]
gi|392077494|gb|EIU03325.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 4S-0303]
gi|392115199|gb|EIU40968.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 6G-0125-R]
gi|392135367|gb|EIU61107.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 6G-0728-S]
gi|392140949|gb|EIU66675.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 6G-1108]
gi|392173585|gb|EIU99252.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 6G-0212]
gi|392176817|gb|EIV02475.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 6G-0728-R]
gi|392204370|gb|EIV29958.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 3A-0119-R]
gi|392213495|gb|EIV39051.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 3A-0122-R]
gi|392217460|gb|EIV42996.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 3A-0122-S]
gi|392217638|gb|EIV43172.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 3A-0731]
gi|392227364|gb|EIV52878.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 4S-0116-R]
gi|392233350|gb|EIV58849.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 3A-0930-R]
gi|392236021|gb|EIV61519.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 4S-0116-S]
gi|392258368|gb|EIV83814.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 3A-0810-R]
Length = 844
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/619 (41%), Positives = 367/619 (59%), Gaps = 59/619 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E+ G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKE---------TAESGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGEAGTP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L +K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKNKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD---------DYWQEIRTVQA 549
DR+LPDKAIDL+DEAG+R I ++ PPD D +E +
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 550 MHEVVQGSRLKYDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
+ + +RL+ + +VA D + D D A V + IA V W+GI
Sbjct: 441 AQDFEKAARLRDSEKQLVAQRAD------REKQWRSGDLDVVAEVDDEQIAEVLGNWTGI 494
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T +E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP
Sbjct: 495 PVFKLTEEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPRRPSGSFIFAGP 554
Query: 668 TGVGKTELAKSLAACYFGS 686
+GVGKTEL+K+LA FG
Sbjct: 555 SGVGKTELSKALANFLFGD 573
>gi|320095436|ref|ZP_08027113.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Actinomyces
sp. oral taxon 178 str. F0338]
gi|319977629|gb|EFW09295.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Actinomyces
sp. oral taxon 178 str. F0338]
Length = 822
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 265/620 (42%), Positives = 370/620 (59%), Gaps = 58/620 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI E GI D R
Sbjct: 1 MFERFTDRARRVVVLAQDEARGLKHNYIGTEHLLLGLITEGEGVAAKALETMGIKGDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
++V+ I KP +PF+ KRVFE ++ + G+N+I EH
Sbjct: 61 KSVIEIIGEGE-----------KPVE--GHIPFTPRAKRVFELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG--ELAKEGREPSLAKGVRENSIS 256
+ LGL +G A +VL + G D+ + + L G EGRE A
Sbjct: 108 LLLGLLKEGEGVAAQVLTKQGADLAQVRQTVIQMLSGYQRGDDEGRESVGAG-------- 159
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
P R+ ++ LEQF +LT A E +DPVIGR TE++R++Q+L RRTKNNP+L
Sbjct: 160 --VGGSGGPERSNSAILEQFGRNLTQAARENKLDPVIGRRTEMERVMQVLSRRTKNNPVL 217
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+ EGLA IV +VP + ++I SLDMG L+AG++ RG+ E R+ ++
Sbjct: 218 IGEPGVGKTAVVEGLAQAIVHGDVPETIKDRQIYSLDMGSLVAGSRYRGDFEERLKKVLK 277
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ GD+ILFIDE+HTL+G+G +G+ +D + +LKP L RGELQ I +TT DE+R
Sbjct: 278 EIRTRGDIILFIDEIHTLVGAGAA----EGS-IDAAQMLKPMLARGELQTIGATTNDEYR 332
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQPV + EPS ED + IL GLR++YEAHH T EAI +A L+ RY
Sbjct: 333 KYIEKDAALERRFQPVKVDEPSVEDTIEILKGLRDRYEAHHRVIITDEAIKSAAELADRY 392
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQ 555
+SDR+LPDKAIDLVDEAG+R I ++ PP E+R + + + E+ +
Sbjct: 393 VSDRFLPDKAIDLVDEAGARLRIRR-----------MTAPP-----ELRELDERISELRR 436
Query: 556 GSRLKYDD----VVASMGDT-SEIVVESSLPSAS----DDDEPAVVGPDDIAAVASLWSG 606
DD A++ D S++ E A+ + DE A V +IA V ++ +G
Sbjct: 437 NKESAIDDQDFEKAAALRDQESKLGEERKAKEAAWKGGESDEIAEVTDHEIAEVLAMSTG 496
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E++L KRVIGQDEAV A++++++R+R GLKDPNRP + +F G
Sbjct: 497 IPVVRLTQTETSKLLRMEDELHKRVIGQDEAVKALAQSIRRTRSGLKDPNRPGGSFIFAG 556
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAK+LA FG
Sbjct: 557 PTGVGKTELAKALAEFLFGD 576
>gi|229816837|ref|ZP_04447119.1| hypothetical protein BIFANG_02085 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785853|gb|EEP21967.1| hypothetical protein BIFANG_02085 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 881
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 244/611 (39%), Positives = 358/611 (58%), Gaps = 46/611 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA+SL + + T+HLLLGLI E G+ ++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARSLQHNYIGTEHLLLGLIREGEGVAAKALASKGVELEATR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V+ + N SS +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQVIEMIGKGNA-------------SSNGHIPFTSHAKQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ V++ L + + ++G A G + ++
Sbjct: 108 ILLGLIREGEGVGTQVLIKMEVNLGELRSATIDMIRGN----------AGGDEKGELANA 157
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ ++ L+QF +LTA A+ +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 158 GGVADKTNKSGSAILDQFGRNLTAEAAAGKLDPVIGRTQEIERVMVVLSRRTKNNPVLIG 217
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 218 EPGVGKTAVVEGLAEKINAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 277
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 278 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 332
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLRE+YE HH T AI AA LS+RYI
Sbjct: 333 IEKDAALERRFQPIQVHEPTIAETIEILKGLRERYENHHRVTITDSAIQAAAELSSRYIQ 392
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR LPDKAIDL+DEAG+R I KR L+ PP+ E + + E Q +
Sbjct: 393 DRRLPDKAIDLIDEAGARLRI---KR--------LTMPPELKELEAKVAKLSAEKEQAVK 441
Query: 559 LKYDDVVASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A M D +E+ + D VV D IA V S +GIPV ++T
Sbjct: 442 DQDFEKAADMRDDLEKLQTELKDRQKAWHEGETDAKMVVDEDVIAEVVSSTTGIPVVKLT 501
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E +L KR+IGQDEAV+A++R+++R+RVGLKDP RP + +F GPTGVGKT
Sbjct: 502 QAESKKLLNMEAELHKRIIGQDEAVSALARSIRRTRVGLKDPKRPAGSFIFAGPTGVGKT 561
Query: 674 ELAKSLAACYF 684
ELAK+LA F
Sbjct: 562 ELAKTLAEFLF 572
>gi|342215074|ref|ZP_08707743.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
oral taxon 780 str. F0422]
gi|341590180|gb|EGS33429.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
oral taxon 780 str. F0422]
Length = 808
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 268/615 (43%), Positives = 365/615 (59%), Gaps = 64/615 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+ ER+TE A +A+ +Q +A + V T+HLLLGL+ E++ L G+
Sbjct: 1 MIERYTEGAKRALAIAQEKAVEYKHNYVGTEHLLLGLVEEEKSVSARALLALGVEGKALE 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V+ A GK S ++ + TK V + A + + RG+N+I EH
Sbjct: 61 QEVIR--------------AVGKGTHSGGQLQMTPRTKHVLDLAQQAANGRGHNYIGTEH 106
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL DGS GV + LAA + R + + V N+I G
Sbjct: 107 ILLGLLY--DGS--------GVAMQLLAAKGI-----------RPEDVVEKV--NAIVGG 143
Query: 259 TAALKSPGRTRASALEQ---FCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+P + AS L + + +DL A + IDPVIGR+TEIQR+IQIL RRTKNNP+
Sbjct: 144 EEPSSNPTQGTASDLGEISDYAIDLNESAKQGKIDPVIGRDTEIQRVIQILSRRTKNNPV 203
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RIV +VP L KRI+S+ + ++AGAK RGE E R+ ++
Sbjct: 204 LIGEPGVGKTAIAEGLAQRIVSGDVPDVLRDKRIISVSLSSMLAGAKYRGEFEERLKKVM 263
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
E+Q D+I+FIDE+HTLIG+G +G +D +N+LKP+L RG Q I +TT DE+
Sbjct: 264 DEVQDHDDMIVFIDEIHTLIGAGA----TEGA-MDAANILKPALARGNFQVIGATTLDEY 318
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
+ EKD AL RRFQPV + EPS+EDA+ IL GLR++YEA H + T EA+ AAVHLS+R
Sbjct: 319 KKHIEKDAALERRFQPVQVGEPSEEDALSILKGLRDRYEAFHKVQITDEALAAAVHLSSR 378
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI+DR+LPDKAID++DEA S+ + +F + PD E VQ E
Sbjct: 379 YIADRFLPDKAIDVMDEAASKVRMAVF-----------TATPDVKALEDELVQVQKEKEA 427
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDD-----DEPAVVGPDDIAAVASLWSGIPVQ 610
+ + A++ D E +ES + S +D + VV +IAAV S WSGIPV
Sbjct: 428 AVTAQDFERAATLRD-KEKELESDIASKQEDSKKDSESKLVVTESEIAAVVSEWSGIPVS 486
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++ +E L+ LEE+L +RVIGQDEAV A+S+AV+R+R GLKDP RP + LF GPTGV
Sbjct: 487 RVAEEESERLLRLEEELHQRVIGQDEAVVAVSKAVRRARAGLKDPKRPIGSFLFLGPTGV 546
Query: 671 GKTELAKSLAACYFG 685
GKTELA+SLA+ FG
Sbjct: 547 GKTELARSLASNLFG 561
>gi|365868512|ref|ZP_09408063.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
massiliense CCUG 48898 = JCM 15300]
gi|397678519|ref|YP_006520054.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
massiliense str. GO 06]
gi|418252108|ref|ZP_12878120.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
abscessus 47J26]
gi|419710796|ref|ZP_14238260.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
abscessus M93]
gi|419713561|ref|ZP_14240985.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
abscessus M94]
gi|420878246|ref|ZP_15341613.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 5S-0304]
gi|420935189|ref|ZP_15398459.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium massiliense 1S-152-0914]
gi|420950195|ref|ZP_15413442.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium massiliense 2B-0626]
gi|420995114|ref|ZP_15458260.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium massiliense 2B-0307]
gi|420996080|ref|ZP_15459223.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium massiliense 2B-0912-R]
gi|421047351|ref|ZP_15510349.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|353448368|gb|EHB96773.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
abscessus 47J26]
gi|364000603|gb|EHM21801.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
massiliense CCUG 48898 = JCM 15300]
gi|382939686|gb|EIC64012.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
abscessus M93]
gi|382946259|gb|EIC70545.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium
abscessus M94]
gi|392083155|gb|EIU08980.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium abscessus 5S-0304]
gi|392146696|gb|EIU72417.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium massiliense 1S-152-0914]
gi|392165281|gb|EIU90968.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium massiliense 2B-0626]
gi|392181216|gb|EIV06868.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium massiliense 2B-0307]
gi|392191900|gb|EIV17525.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium massiliense 2B-0912-R]
gi|392243903|gb|EIV69386.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium massiliense CCUG 48898]
gi|395456784|gb|AFN62447.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium massiliense str. GO 06]
Length = 844
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/619 (41%), Positives = 369/619 (59%), Gaps = 59/619 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E+ G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKE---------TAESGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGEAGTP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L +K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKNKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD---------DYWQEIRTVQA 549
DR+LPDKAIDL+DEAG+R I ++ PPD D +E +
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 550 MHEVVQGSRLKYDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
+ + +RL+ + +VA D + D D A V + IA V W+GI
Sbjct: 441 AQDFEKAARLRDSEKQLVAQRAD------REKQWRSGDLDVVAEVDDEQIAEVLGNWTGI 494
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T +E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP
Sbjct: 495 PVFKLTEEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPRRPSGSFIFAGP 554
Query: 668 TGVGKTELAKSLAACYFGS 686
+GVGKTEL+K+LA FG
Sbjct: 555 SGVGKTELSKALANFLFGD 573
>gi|365873228|ref|ZP_09412761.1| ATPase with chaperone activity, ATP-binding subunit
[Thermanaerovibrio velox DSM 12556]
gi|363983315|gb|EHM09522.1| ATPase with chaperone activity, ATP-binding subunit
[Thermanaerovibrio velox DSM 12556]
Length = 817
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/649 (39%), Positives = 380/649 (58%), Gaps = 94/649 (14%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+++ FTER K V + REA LG +++ T+H+LLGL+AE +G+ +D+ R
Sbjct: 1 MWQFFTERGKKVVQLAHREALRLGHEVIGTEHILLGLLAEGEGVASQVLRAAGLELDEIR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V + G+P +P S KRV + ++ +R+ G N++ EH
Sbjct: 61 EQVERV------------VGVGEPKDKPVDLPLSPRAKRVLDLSMREARNMGVNYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A ++L R+G+D P + + +SG
Sbjct: 109 ILLGLLAEGEGVAFQILNRMGLD----------------------PVKVRQDVQAYLSGT 146
Query: 259 TAALKSPGRT-----------RASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILC 307
++ L+ P R+ + L+Q VDL+ A +DPVIGR EIQR++Q+L
Sbjct: 147 SSELQDPRRSGDDQDRKGAQSKTPTLDQLGVDLSELARNGELDPVIGRGKEIQRLVQVLS 206
Query: 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGEL 367
RRTKNNP+L+G+ GVGKTAI EGLA R+V ++P L KR++ L++G L+AG K RGE
Sbjct: 207 RRTKNNPVLIGDPGVGKTAIVEGLAQRVVSGDIPEVLKGKRVVQLNVGNLVAGTKYRGEF 266
Query: 368 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427
E R+ L+ EI++S +VILF+DE+HTL+G+G G +G +D +N+LKPSL RGE Q I
Sbjct: 267 EERMRKLVKEIKESKNVILFVDEIHTLVGAG----GAEGA-VDAANILKPSLARGEFQVI 321
Query: 428 ASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAIN 487
+TT +E+R EKD AL RRFQP+ + EPS+ED V IL GLR++YEAHH K + EA+
Sbjct: 322 GATTMEEYRKYIEKDAALERRFQPIHVDEPSEEDTVLILEGLRDRYEAHHRVKISDEALV 381
Query: 488 AAVHLSARYISDRYLPDKAIDLVDEAGSRAHI----------ELFKR----KKEQQTCIL 533
AA LS RYI++RYLPDKAIDL+DEA +R+ + E+ KR +KE+++ ++
Sbjct: 382 AAARLSKRYITERYLPDKAIDLIDEAAARSRLKTMEAPEELKEMEKRLEEVRKEKESAVM 441
Query: 534 SKPPDDYW----QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP 589
S+ + +E R + M EV + +++ + +EP
Sbjct: 442 SQEFEKAATLRDEERRLYEEMEEVRRRWQVR-----------------------RNQEEP 478
Query: 590 AVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSR 649
V G +DIA + S W+G+PV Q+T +E L+ +EE++ +R++GQ+EAV+A++RA++R+R
Sbjct: 479 VVTG-EDIAVIVSEWTGVPVVQLTEEEAKRLLRMEEEIHRRLVGQEEAVSAVARAIRRAR 537
Query: 650 VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698
GLKDP RP + LF GPTGVGKTELA+ LA FGS F S F
Sbjct: 538 SGLKDPRRPVGSFLFLGPTGVGKTELARRLAWFLFGSDDAMIRFDMSEF 586
>gi|417907371|ref|ZP_12551144.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
capitis VCU116]
gi|341596264|gb|EGS38880.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
capitis VCU116]
Length = 817
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/617 (41%), Positives = 352/617 (57%), Gaps = 66/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQEQVGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V L P ++ + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGS--------PEMSNKNAQANK 156
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S T L S R DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 157 SNNTPTLDSLAR-----------DLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ED + IL GLR++YEAHH + EA+ AA LS R
Sbjct: 321 RKNIEKDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSNR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIE-------LFKRKKEQQTCILSKPPDDYWQEIRTVQ 548
Y+SDR+LPDKAIDL+DEA S+ ++ L + ++E + K + QE
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIENVKNEKDAAVHAQEFENAA 440
Query: 549 AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ + +Y++ ++ V + +DIA V + W+GIP
Sbjct: 441 NLRDKQSKLEKQYEEAKNEWKNSQGGV-------------STALSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L RVIGQ++AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESDRLLNLEDTLHNRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTELA++LA FG
Sbjct: 548 GVGKTELARALAESMFG 564
>gi|229188367|ref|ZP_04315415.1| Negative regulator of genetic competence [Bacillus cereus ATCC
10876]
gi|228595041|gb|EEK52812.1| Negative regulator of genetic competence [Bacillus cereus ATCC
10876]
Length = 811
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 260/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|375291593|ref|YP_005126133.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae 241]
gi|376246431|ref|YP_005136670.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae HC01]
gi|376249217|ref|YP_005141161.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae HC04]
gi|376285444|ref|YP_005158654.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae 31A]
gi|376293971|ref|YP_005165645.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae HC02]
gi|419861512|ref|ZP_14384144.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae bv. intermedius str. NCTC 5011]
gi|371578959|gb|AEX42627.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae 31A]
gi|371581264|gb|AEX44931.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae 241]
gi|372109061|gb|AEX75122.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae HC01]
gi|372111294|gb|AEX77354.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae HC02]
gi|372115785|gb|AEX81843.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae HC04]
gi|387981983|gb|EIK55504.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae bv. intermedius str. NCTC 5011]
Length = 878
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/616 (41%), Positives = 361/616 (58%), Gaps = 40/616 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + A +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPAGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS--LAKGVRENSI 255
+ LGL DG A +VL +LG D+ + + L G E E +
Sbjct: 107 FLLLGLIREGDGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGESPENNNDGEAVGAGTGA 166
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ R+ + L+QF +LT A E +DPV+GRE EI+RI+Q+L RRTKNNP+
Sbjct: 167 GRAGRGGGAGERSNSLVLDQFGRNLTQAAKEGKLDPVVGREQEIERIMQVLSRRTKNNPV 226
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ ++
Sbjct: 227 LIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQVYSLDLGSLVAGSRYRGDFEERLKKVL 286
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE+
Sbjct: 287 KEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDEY 341
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS + + IL GLR++YEAHH T A+ AA LS R
Sbjct: 342 RKHIEKDAALERRFQPVQVPEPSVDMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSDR 401
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI+DR+LPDKA+DL+DEAG+R I KR ++ + DD E+R + Q
Sbjct: 402 YINDRFLPDKAVDLIDEAGARMRI---KRMTAPESI---RKVDDQIAEVRREKEAAIDAQ 455
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ A + DT + E + D ++ A VG + IA V W+GIPV
Sbjct: 456 DF-----EKAAGLRDTERKLGEERAEKEKQWRSGDLEDIAEVGEEQIAEVLGNWTGIPVF 510
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L+ +EE+L KR+IGQD+AV ++SRA++R+R GLKDP RP+ + +F GP+GV
Sbjct: 511 KLTEEESSRLLHMEEELHKRIIGQDDAVKSVSRAIRRTRAGLKDPRRPSGSFIFAGPSGV 570
Query: 671 GKTELAKSLAACYFGS 686
GKTEL+KSLA FG
Sbjct: 571 GKTELSKSLANFLFGD 586
>gi|251809941|ref|ZP_04824414.1| ClpB ATPase [Staphylococcus epidermidis BCM-HMP0060]
gi|282875025|ref|ZP_06283900.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis SK135]
gi|417646131|ref|ZP_12296010.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU144]
gi|417657343|ref|ZP_12307008.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU028]
gi|417911486|ref|ZP_12555191.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU105]
gi|417914018|ref|ZP_12557673.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU109]
gi|418326361|ref|ZP_12937547.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU071]
gi|418412965|ref|ZP_12986212.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
epidermidis BVS058A4]
gi|418617569|ref|ZP_13180460.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU120]
gi|418621530|ref|ZP_13184299.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU123]
gi|418624700|ref|ZP_13187370.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU125]
gi|418629608|ref|ZP_13192105.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU127]
gi|418664665|ref|ZP_13226132.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU081]
gi|419770348|ref|ZP_14296428.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-250]
gi|419772786|ref|ZP_14298812.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-K]
gi|420169340|ref|ZP_14675941.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM087]
gi|420171652|ref|ZP_14678190.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM070]
gi|420172258|ref|ZP_14678768.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM067]
gi|420182216|ref|ZP_14688354.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM049]
gi|420186453|ref|ZP_14692521.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM040]
gi|420188161|ref|ZP_14694175.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM039]
gi|420195785|ref|ZP_14701572.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM021]
gi|420203004|ref|ZP_14708590.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM018]
gi|420207055|ref|ZP_14712558.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM008]
gi|420208689|ref|ZP_14714147.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM003]
gi|420213834|ref|ZP_14719116.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH05005]
gi|420218208|ref|ZP_14723306.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH05001]
gi|421607888|ref|ZP_16049122.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus epidermidis AU12-03]
gi|251806484|gb|EES59141.1| ClpB ATPase [Staphylococcus epidermidis BCM-HMP0060]
gi|281296353|gb|EFA88872.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis SK135]
gi|329729477|gb|EGG65880.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU144]
gi|329734648|gb|EGG70955.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU028]
gi|341653063|gb|EGS76836.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU105]
gi|341653849|gb|EGS77614.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU109]
gi|365225772|gb|EHM67010.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU071]
gi|374410321|gb|EHQ81080.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU081]
gi|374817996|gb|EHR82168.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU120]
gi|374826897|gb|EHR90773.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU125]
gi|374828761|gb|EHR92586.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU123]
gi|374833371|gb|EHR97059.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU127]
gi|383357294|gb|EID34769.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-250]
gi|383358879|gb|EID36321.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-K]
gi|394231370|gb|EJD77000.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM087]
gi|394237114|gb|EJD82609.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM070]
gi|394242898|gb|EJD88275.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM067]
gi|394250200|gb|EJD95394.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM049]
gi|394252169|gb|EJD97210.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM040]
gi|394255421|gb|EJE00372.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM039]
gi|394262906|gb|EJE07658.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM021]
gi|394268877|gb|EJE13428.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM018]
gi|394276375|gb|EJE20716.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM008]
gi|394281390|gb|EJE25639.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM003]
gi|394284232|gb|EJE28386.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH05005]
gi|394284688|gb|EJE28790.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH05001]
gi|406656502|gb|EKC82907.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus epidermidis AU12-03]
gi|410879558|gb|EKS27399.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
epidermidis BVS058A4]
Length = 817
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/624 (41%), Positives = 353/624 (56%), Gaps = 80/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQEQMGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V K + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPEM 147
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 148 SNKNAQANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV+ EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS R
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSDR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYW 541
Y+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAV-------HA 433
Query: 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
QE + + +Y+D + + L +A + ++IA V
Sbjct: 434 QEFENAANLRDKQSKLEKQYEDAKNEWKN-----AQGGLDTA--------LSEENIAEVI 480
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
+ W+GIP+ +I E L+ LE+ L KRVIGQ++AV +IS+AV+R+R GLKDP RP +
Sbjct: 481 AGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGS 540
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 541 FIFLGPTGVGKTELARALAESMFG 564
>gi|423645099|ref|ZP_17620715.1| chaperone ClpB [Bacillus cereus VD166]
gi|401267794|gb|EJR73850.1| chaperone ClpB [Bacillus cereus VD166]
Length = 811
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 260/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVAHENRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|119025591|ref|YP_909436.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
adolescentis ATCC 15703]
gi|118765175|dbj|BAF39354.1| probable ATP-dependent Clp protease ATP-binding subunit
[Bifidobacterium adolescentis ATCC 15703]
Length = 864
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/611 (39%), Positives = 362/611 (59%), Gaps = 43/611 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+T+D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVTLDDTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N S +PF+ ++V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGNA-------------SPNGHIPFTPHARQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ V++ L + + ++G + +G+ S + ++
Sbjct: 108 ILLGLIHEGEGVGTQVLIKMDVNLGELRSATIDLIRGN-SSDGKNDS------KGELANA 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+T ++ L+QF +LTA A+ +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 161 GGVQDRRNQTGSAILDQFGRNLTAEAAAGKLDPVIGRSNEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKINAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLRE+YE HH+ T A+ AA LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPTIAETIEILKGLRERYENHHHVTITDGALQAAAELSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I L+ PP+ + + + E Q +
Sbjct: 396 DRHLPDKAIDLIDEAGARLRIRR-----------LTAPPELKELDAKAAKLAEEKDQAIK 444
Query: 559 LKYDDVVASMGDTSEIV-----VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + D E + + S + D VV D IA V S +GIPV ++T
Sbjct: 445 DQDFEKAAELRDKQEKIESERKEKESAWREGESDVKMVVDEDVIAEVISQTTGIPVFKLT 504
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+G+E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP + +F GPTGVGKT
Sbjct: 505 QAESKKLMGMESELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPAGSFIFAGPTGVGKT 564
Query: 674 ELAKSLAACYF 684
ELAK+LA F
Sbjct: 565 ELAKALAEFLF 575
>gi|383807762|ref|ZP_09963321.1| ATP-dependent protease, ATPase subunit [Candidatus Aquiluna sp.
IMCC13023]
gi|383298505|gb|EIC91121.1| ATP-dependent protease, ATPase subunit [Candidatus Aquiluna sp.
IMCC13023]
Length = 825
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/622 (40%), Positives = 365/622 (58%), Gaps = 69/622 (11%)
Query: 79 SSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDK 136
+++FE+FT++A + V+ +Q EAK L + + T+H+LLGLI E LE+ GI +++
Sbjct: 4 ANLFEKFTDKARRVVVLAQEEAKLLNHNYIGTEHILLGLIHEGEGVAAKALEALGINLEQ 63
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
RE V D QG+ S + +PF+ K+V E ++ + G+++I
Sbjct: 64 VREQV------------QDIIGQGQQ-SPSGHIPFTPRAKKVLELSLREALQLGHSYIGT 110
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EH+ LGL +G A +VL +LG D N + + L G KE S+
Sbjct: 111 EHLLLGLIREGEGVAAQVLTKLGADTNKVRQQVIQLLSGYQGKES-----------VSVG 159
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
G+ P ++ L+Q+ +LT A+E +DPV+GRE E +R++QIL RRTKNNPIL
Sbjct: 160 GEA----QPQAKGSTILDQYGRNLTHAAAEGKLDPVVGREKETERVMQILSRRTKNNPIL 215
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+ EGLAI IV VP L K++ +LDMG L+AG++ RG+ E R+ +
Sbjct: 216 IGEPGVGKTAVVEGLAIAIVAGNVPETLRGKQLYTLDMGSLIAGSRYRGDFEERLKKVTK 275
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ GD+I FIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 276 EIRTRGDIITFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYR 330
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
FEKD ALARRFQ + ++EPS A+ IL GLR++YEAHH T AI AAV +S RY
Sbjct: 331 KHFEKDAALARRFQSIQVAEPSPALAISILKGLRDRYEAHHKVSITDGAIVAAVSMSDRY 390
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQG 556
++DR+LPDKAIDL+DEAG+R + LS PP+ ++AM E V
Sbjct: 391 VTDRFLPDKAIDLIDEAGARLRL-----------SFLSAPPE--------LKAMEEKVAV 431
Query: 557 SRLKYDDVVASMG--------------DTSEIVVESSLPSASDDDEPAVVGPDDIAAVAS 602
R + +A ++ +E S D P VV IA V +
Sbjct: 432 VRQAKEQAIADQDFEAAATKRDEEKKLTAEKVRMEKEFRDGSLDT-PGVVDEALIAEVIA 490
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
+GIP+ ++ DE L+ +E+ L KRVIGQ++A+AA+S+ ++R R GLKDP RP+ +
Sbjct: 491 QATGIPLFKLGEDEGAKLIYMEDGLHKRVIGQEQAIAALSKTIRRQRAGLKDPKRPSGSF 550
Query: 663 LFCGPTGVGKTELAKSLAACYF 684
+F GPTGVGKTELAK+LA F
Sbjct: 551 IFAGPTGVGKTELAKALAEFLF 572
>gi|416127894|ref|ZP_11597159.1| negative regulator of genetic competence clpC/mecB [Staphylococcus
epidermidis FRI909]
gi|418328513|ref|ZP_12939624.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis 14.1.R1.SE]
gi|418631361|ref|ZP_13193825.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU128]
gi|418634140|ref|ZP_13196536.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU129]
gi|420178488|ref|ZP_14684819.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM057]
gi|420179587|ref|ZP_14685875.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM053]
gi|420191066|ref|ZP_14697002.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM037]
gi|420200939|ref|ZP_14706577.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM031]
gi|420203524|ref|ZP_14709086.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM015]
gi|420233736|ref|ZP_14738315.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH051475]
gi|319399727|gb|EFV87976.1| negative regulator of genetic competence clpC/mecB [Staphylococcus
epidermidis FRI909]
gi|365231831|gb|EHM72848.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis 14.1.R1.SE]
gi|374835462|gb|EHR99072.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU128]
gi|374837442|gb|EHS01006.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU129]
gi|394246423|gb|EJD91681.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM057]
gi|394253576|gb|EJD98581.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM053]
gi|394258024|gb|EJE02919.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM037]
gi|394267420|gb|EJE12013.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM031]
gi|394274485|gb|EJE18901.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM015]
gi|394304910|gb|EJE48301.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH051475]
Length = 817
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/624 (41%), Positives = 353/624 (56%), Gaps = 80/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQEQMGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V K + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPEM 147
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 148 SNKNAQANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV+ EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS R
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSDR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYW 541
Y+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAV-------HA 433
Query: 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
QE + + +Y+D + + L +A + ++IA V
Sbjct: 434 QEFENAANLRDKQSKLEKQYEDAKNEWKN-----AQGGLDTA--------LSEENIAEVI 480
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
+ W+GIP+ +I E L+ LE+ L KRVIGQ++AV +IS+AV+R+R GLKDP RP +
Sbjct: 481 AGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGS 540
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 541 FIFLGPTGVGKTELARALAESMFG 564
>gi|314932748|ref|ZP_07840117.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
caprae C87]
gi|313654429|gb|EFS18182.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
caprae C87]
Length = 817
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/617 (41%), Positives = 352/617 (57%), Gaps = 66/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQEQMGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V L P ++ + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGS--------PEMSNKNAQANK 156
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S T L S R DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 157 SNNTPTLDSLAR-----------DLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ED + IL GLR++YEAHH + EA+ AA LS R
Sbjct: 321 RKNIEKDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSNR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIE-------LFKRKKEQQTCILSKPPDDYWQEIRTVQ 548
Y+SDR+LPDKAIDL+DEA S+ ++ L + ++E + K + QE
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIENVKNEKDAAVHAQEFENAA 440
Query: 549 AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ + +Y++ ++ V + +DIA V + W+GIP
Sbjct: 441 NLRDKQSKLEKQYEEAKNEWKNSQGGV-------------STALSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L RVIGQ++AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESGRLLNLEDTLHNRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTELA++LA FG
Sbjct: 548 GVGKTELARALAESMFG 564
>gi|326328759|ref|ZP_08195095.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Nocardioidaceae bacterium Broad-1]
gi|325953381|gb|EGD45385.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Nocardioidaceae bacterium Broad-1]
Length = 861
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 252/614 (41%), Positives = 374/614 (60%), Gaps = 45/614 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E G+ KA E+
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLSHNYIGTEHILLGLIHEG--------EGVAA-KALES 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + NQ ++ QG+ + + +PF+ K+V E ++ + G+++I EHI
Sbjct: 52 LDISLEAVRNQ-VEEIIGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHSYIGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A +VL++LG D+N + + L G KEG+ + + S T
Sbjct: 110 LGLIREGEGVAAQVLQKLGADLNRVRQQVIQLLSGFQGKEGQAGTSG-----ATASTGTT 164
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ ++P + + L+QF +LT A E +DP+IGRE +I+R++Q+L RRTKNNP+L+GE
Sbjct: 165 STEAP--SSSLVLDQFGRNLTQDAREGKLDPIIGREGQIERVMQVLSRRTKNNPVLIGEP 222
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKT+I EGLA IV+ VP L K+I +LD+G L+AG++ RG+ E R+ ++ EI+
Sbjct: 223 GVGKTSIVEGLAQDIVKGNVPETLKDKQIYTLDLGALVAGSRYRGDFEERLKKVLKEIKT 282
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
GD++LFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R E
Sbjct: 283 RGDIVLFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKYLE 337
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ A+ +L G+R++YEAHH T EA+ AAV ++ RYISDR
Sbjct: 338 KDAALERRFQPIQVPEPTIAVAIEMLKGIRDRYEAHHRVTITDEALVAAVTMADRYISDR 397
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQGS 557
+LPDKAIDL+DEAGSR I ++ P D +Y +I V+ E + G
Sbjct: 398 FLPDKAIDLIDEAGSRLRIRR-----------MTAPADLREYDDKIADVRQRKEAAIDGQ 446
Query: 558 RLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ A + D + ++ A D DE A V + IA V ++ +GIP+ Q+
Sbjct: 447 DF---EAAARLRDEEKQLIAKKAEREKAWRAGDMDEVAEVDEELIAEVLAVATGIPIVQV 503
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +E++L KRVIGQDEAV A+SRA++R+R GLKDP RP + +F GP+GVGK
Sbjct: 504 NEEESARLLRMEDELHKRVIGQDEAVKALSRAIRRTRAGLKDPKRPGGSFIFAGPSGVGK 563
Query: 673 TELAKSLAACYFGS 686
T L+K+LA FG
Sbjct: 564 TWLSKTLAEFLFGD 577
>gi|223042918|ref|ZP_03612966.1| ATPase family associated with various cellular activities (AAA)
protein [Staphylococcus capitis SK14]
gi|222443772|gb|EEE49869.1| ATPase family associated with various cellular activities (AAA)
protein [Staphylococcus capitis SK14]
Length = 817
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/617 (41%), Positives = 352/617 (57%), Gaps = 66/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQEQMGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V L P ++ + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGS--------PEMSNKNAQANK 156
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S T L S R DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 157 SNNTPTLDSLAR-----------DLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ED + IL GLR++YEAHH + EA+ AA LS R
Sbjct: 321 RKNIEKDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSNR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIE-------LFKRKKEQQTCILSKPPDDYWQEIRTVQ 548
Y+SDR+LPDKAIDL+DEA S+ ++ L + ++E + K + QE
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIENVKNEKDAAVHAQEFENAA 440
Query: 549 AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ + +Y++ ++ V + +DIA V + W+GIP
Sbjct: 441 NLRDKQSKLEKQYEEAKNEWKNSQGGV-------------STALSEEDIAEVIAGWTGIP 487
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ +I E L+ LE+ L RVIGQ++AV +IS+AV+R+R GLKDP RP + +F GPT
Sbjct: 488 LTKINETESDRLLNLEDTLHNRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPT 547
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTELA++LA FG
Sbjct: 548 GVGKTELARALAESMFG 564
>gi|218233784|ref|YP_002364931.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
B4264]
gi|228919032|ref|ZP_04082411.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|229176682|ref|ZP_04304086.1| Negative regulator of genetic competence [Bacillus cereus 172560W]
gi|365164056|ref|ZP_09360142.1| chaperone ClpB [Bacillus sp. 7_6_55CFAA_CT2]
gi|423416018|ref|ZP_17393138.1| chaperone ClpB [Bacillus cereus BAG3O-2]
gi|423428188|ref|ZP_17405192.1| chaperone ClpB [Bacillus cereus BAG4O-1]
gi|423578489|ref|ZP_17554600.1| chaperone ClpB [Bacillus cereus VD014]
gi|423590631|ref|ZP_17566693.1| chaperone ClpB [Bacillus cereus VD045]
gi|218161741|gb|ACK61733.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
B4264]
gi|228606725|gb|EEK64142.1| Negative regulator of genetic competence [Bacillus cereus 172560W]
gi|228840557|gb|EEM85819.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|363613357|gb|EHL64874.1| chaperone ClpB [Bacillus sp. 7_6_55CFAA_CT2]
gi|401094465|gb|EJQ02546.1| chaperone ClpB [Bacillus cereus BAG3O-2]
gi|401127110|gb|EJQ34839.1| chaperone ClpB [Bacillus cereus BAG4O-1]
gi|401220268|gb|EJR26910.1| chaperone ClpB [Bacillus cereus VD045]
gi|401221214|gb|EJR27838.1| chaperone ClpB [Bacillus cereus VD014]
Length = 811
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 260/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|154487051|ref|ZP_02028458.1| hypothetical protein BIFADO_00889 [Bifidobacterium adolescentis
L2-32]
gi|154084914|gb|EDN83959.1| ATPase family associated with various cellular activities (AAA)
[Bifidobacterium adolescentis L2-32]
Length = 864
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/611 (39%), Positives = 359/611 (58%), Gaps = 43/611 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+T+D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVTLDDTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N S +PF+ ++V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGNA-------------SPNGHIPFTPHARQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ V++ L + + ++G S K + ++
Sbjct: 108 ILLGLIHEGEGVGTQVLIKMDVNLGELRSATIDLIRGN-------SSDGKNDGKGELANA 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+T ++ L+QF +LTA A+ +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 161 GGVQDRRNQTGSAILDQFGRNLTAEAAAGKLDPVIGRSNEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKINAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLRE+YE HH+ T A+ AA LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPTIAETIEILKGLRERYENHHHVTITDGALQAAAELSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I L+ PP+ + + + E Q +
Sbjct: 396 DRHLPDKAIDLIDEAGARLRIRR-----------LTAPPELKELDAKAAKLAEEKDQAIK 444
Query: 559 LKYDDVVASMGDTSEIV-----VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + D E + + S + D VV D IA V S +GIPV ++T
Sbjct: 445 DQDFEKAAELRDKQEKIESERKEKESAWREGESDVKMVVDEDVIAEVISQTTGIPVFKLT 504
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+G+E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP + +F GPTGVGKT
Sbjct: 505 QAESKKLMGMESELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPAGSFIFAGPTGVGKT 564
Query: 674 ELAKSLAACYF 684
ELAK+LA F
Sbjct: 565 ELAKALAEFLF 575
>gi|376255026|ref|YP_005143485.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae PW8]
gi|372118110|gb|AEX70580.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae PW8]
Length = 878
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/616 (41%), Positives = 361/616 (58%), Gaps = 40/616 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + A +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPAGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS--LAKGVRENSI 255
+ LGL DG A +VL +LG D+ + + L G E E +
Sbjct: 107 FLLLGLIREGDGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGESPENNNDGEAVGAGTGA 166
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ R+ + L+QF +LT A E +DPV+GRE EI+RI+Q+L RRTKNNP+
Sbjct: 167 GRAGRGGGAGERSNSLVLDQFGRNLTQAAKEGKLDPVVGREQEIERIMQVLSRRTKNNPV 226
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ ++
Sbjct: 227 LIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQVYSLDLGSLVAGSRYRGDFEERLKKVL 286
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE+
Sbjct: 287 KEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDEY 341
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS + + IL GLR++YEAHH T A+ AA LS R
Sbjct: 342 RKHIEKDAALERRFQPVQVPEPSVDMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSDR 401
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI+DR+LPDKA+DL+DEAG+R I KR ++ + DD E+R + Q
Sbjct: 402 YINDRFLPDKAVDLIDEAGARMRI---KRMTAPESI---RKVDDQIAEVRREKEAAIDAQ 455
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ A + DT + E + D ++ A VG + IA V W+GIPV
Sbjct: 456 DF-----EKAAGLRDTERKLGEERAEKEKQWRSGDLEDIAEVGEEQIAEVLGNWTGIPVF 510
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L+ +EE+L KR+IGQD+AV ++SRA++R+R GLKDP RP+ + +F GP+GV
Sbjct: 511 KLTEEESSRLLHMEEELHKRIIGQDDAVKSVSRAIRRTRAGLKDPRRPSGSFIFAGPSGV 570
Query: 671 GKTELAKSLAACYFGS 686
GKTEL+KSLA FG
Sbjct: 571 GKTELSKSLANFLFGD 586
>gi|317050439|ref|YP_004111555.1| ATPase AAA-2 domain-containing protein [Desulfurispirillum indicum
S5]
gi|316945523|gb|ADU64999.1| ATPase AAA-2 domain protein [Desulfurispirillum indicum S5]
Length = 811
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/611 (42%), Positives = 383/611 (62%), Gaps = 52/611 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FE+FTERA + +I +++EA L + + T+HLLLG+I + NG GI ++ +
Sbjct: 1 MFEQFTERARRIIIIARQEAARLQQGSISTEHLLLGIIKD----NG----GIGVNVIKRM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++I + + + G+ A +PFS +K+V E AVE ++ N++A EHI
Sbjct: 53 GINI--NILKLEIEKYLPIGRNTIMDADIPFSAQSKKVLEYAVEEAKLTNQNYVADEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
+GL G A +L +G+ + H+ ++R+ GR P L +S++
Sbjct: 111 IGLMREQKGKAYDILSAMGLSLPHIRE-EINRVIA-----GR-PDL------DSMNRTIQ 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ K+P T L++F DLT A+E +DPVIGR++ I+R+IQ+LCRRTKNNP+L+GE
Sbjct: 158 SRKAPTPT----LDEFGRDLTKLAAEGRLDPVIGRDSVIERVIQVLCRRTKNNPVLIGEP 213
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI ++P L SKR++SL++G+L+AG K RG+ E R+ ++ EI +
Sbjct: 214 GVGKTAIAEGLAQRIASRDIPEILASKRLISLNLGMLVAGTKYRGQFEERMKNIMREITE 273
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ +VI+FIDE+HTLIG+G +G+ +D SN+LKPSL RGE+QCI +TT E+R FE
Sbjct: 274 NDNVIIFIDEIHTLIGAGAA----EGS-IDASNMLKPSLSRGEIQCIGATTLAEYRKYFE 328
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD L RRFQ VL+SEPS +D V IL GLRE+YE HH+ + T AI AA+ LS RYI+++
Sbjct: 329 KDAPLERRFQTVLVSEPSDDDTVEILKGLRERYEKHHHVRITDPAIVAAISLSTRYITNK 388
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAID++DEA +RA I IL PD+ + Q + E + + K
Sbjct: 389 FLPDKAIDVIDEACARARI---------YKVIL---PDNLKKMESRSQQLREEQKDAIGK 436
Query: 561 YD-DVVASMGDTSEIVV------ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
D + A + D E ++ + + EP V+G +DIA+V SL +GIP+Q++
Sbjct: 437 QDFETAAKLRDEQEKLIIRLEKEKLEWKKEQEKIEP-VIGEEDIASVVSLMTGIPLQKLQ 495
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LE++L KR++GQDE V A+++A++RSRVGL+ +P A LF GPTGVGKT
Sbjct: 496 ERETQKLLSLEDELHKRMVGQDEGVKAVAKAIRRSRVGLQSATKPIGAFLFLGPTGVGKT 555
Query: 674 ELAKSLAACYF 684
ELAKSLA F
Sbjct: 556 ELAKSLAEHLF 566
>gi|319948880|ref|ZP_08022993.1| ATPase AAA-2 domain-containing protein [Dietzia cinnamea P4]
gi|319437482|gb|EFV92489.1| ATPase AAA-2 domain-containing protein [Dietzia cinnamea P4]
Length = 883
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/612 (41%), Positives = 365/612 (59%), Gaps = 45/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+ + + L G KE G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLTRVRQQVIQLLSGYQGKEAEASGTPAG--------- 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T +S + ++ L+QF +LT A E +DPV+GR E++RI+Q+L RRTKNNP+L+G
Sbjct: 159 TGGRESGTPSSSTVLDQFGRNLTQAAMEGKLDPVVGRAKEVERIMQVLSRRTKNNPVLIG 218
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ SLD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 219 EPGVGKTAVVEGLAQAIVNNEVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKVLKEI 278
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 279 NQRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLEEYRKH 333
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP E ++ IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 334 IEKDAALERRFQPVQVPEPGVELSIEILKGLRDRYEAHHRVTITDAALAAAAQLADRYIN 393
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I KR ++ PPD + + + E
Sbjct: 394 DRFLPDKAIDLIDEAGARMRI---KR--------MTAPPDLREFDEKIAETRREKESAID 442
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + DT + ++ A D D AVV + IA V W+GIPV ++T
Sbjct: 443 AQDFEKAAGLRDTEKKLIAERAEREKQWRAGDMDVAAVVDEEQIAEVLGNWTGIPVFKLT 502
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++A+ A+SRA++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 503 EEETTRLLRMEDELHKRIIGQEDAIKAVSRAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 562
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 563 ELSKALANFLFG 574
>gi|30018352|ref|NP_829983.1| negative regulator of genetic competence clpC/mecB [Bacillus cereus
ATCC 14579]
gi|228956523|ref|ZP_04118319.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229107768|ref|ZP_04237404.1| Negative regulator of genetic competence [Bacillus cereus Rock1-15]
gi|229125599|ref|ZP_04254631.1| Negative regulator of genetic competence [Bacillus cereus
BDRD-Cer4]
gi|229142888|ref|ZP_04271329.1| Negative regulator of genetic competence [Bacillus cereus
BDRD-ST24]
gi|296500916|ref|YP_003662616.1| genetic competence negative regulator ClpC/MecB [Bacillus
thuringiensis BMB171]
gi|423631991|ref|ZP_17607737.1| chaperone ClpB [Bacillus cereus VD154]
gi|423638085|ref|ZP_17613737.1| chaperone ClpB [Bacillus cereus VD156]
gi|423646217|ref|ZP_17621787.1| chaperone ClpB [Bacillus cereus VD169]
gi|423653016|ref|ZP_17628315.1| chaperone ClpB [Bacillus cereus VD200]
gi|29893892|gb|AAP07184.1| Negative regulator of genetic competence clpC/mecB [Bacillus cereus
ATCC 14579]
gi|228640509|gb|EEK96898.1| Negative regulator of genetic competence [Bacillus cereus
BDRD-ST24]
gi|228657791|gb|EEL13597.1| Negative regulator of genetic competence [Bacillus cereus
BDRD-Cer4]
gi|228675617|gb|EEL30825.1| Negative regulator of genetic competence [Bacillus cereus Rock1-15]
gi|228803088|gb|EEM49910.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296321968|gb|ADH04896.1| negative regulator of genetic competence clpC/mecB [Bacillus
thuringiensis BMB171]
gi|401262710|gb|EJR68848.1| chaperone ClpB [Bacillus cereus VD154]
gi|401271809|gb|EJR77812.1| chaperone ClpB [Bacillus cereus VD156]
gi|401287846|gb|EJR93613.1| chaperone ClpB [Bacillus cereus VD169]
gi|401303124|gb|EJS08687.1| chaperone ClpB [Bacillus cereus VD200]
Length = 811
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 260/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|336321879|ref|YP_004601847.1| ATPase AAA [[Cellvibrio] gilvus ATCC 13127]
gi|336105460|gb|AEI13279.1| ATPase AAA-2 domain protein [[Cellvibrio] gilvus ATCC 13127]
Length = 860
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/617 (41%), Positives = 371/617 (60%), Gaps = 59/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I Q P + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 AQVQEII----------GEGQQAP---SGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + + G +G+EP A G +E SG
Sbjct: 108 ILLGLIREGEGVAAQVLNKLGADLNRVRQQVIQLVSG---YQGKEPVAAGGPQEGQPSG- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ L+QF +LT A + +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 -----------SAVLDQFGRNLTQAARDNKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQDIVRGDVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EP+ + A+ IL GLR++YEAHH T A+ AA L+ RY++
Sbjct: 328 VEKDPALERRFQPIQVAEPNLQHAIEILKGLRDRYEAHHRVSITDSALVAAATLADRYVN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV-- 554
DRYLPDKAIDLVDEAG+R I ++ PP+ + +EI + E
Sbjct: 388 DRYLPDKAIDLVDEAGARLRIRR-----------MTAPPELRELDEEIANTRRDKESAID 436
Query: 555 -----QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ +RL+ + + + E + S D D A V + IA V + +GIPV
Sbjct: 437 EQDFEKAARLRDQEKQLGLKRAEK---EKAWKSG-DLDAVAEVDEELIAEVLANATGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E+ L KRV+GQ+ A+ A+S+A++R+R GLKDP RP + +F GPTG
Sbjct: 493 FKLTEEESSRLLHMEDNLHKRVVGQNAAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPTG 552
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELAK+LA FG
Sbjct: 553 VGKTELAKALAEFLFGD 569
>gi|408501309|ref|YP_006865228.1| transporter, probably Type VI secretion system, EvpA-P
[Bifidobacterium asteroides PRL2011]
gi|408466133|gb|AFU71662.1| transporter, probably Type VI secretion system, EvpA-P
[Bifidobacterium asteroides PRL2011]
Length = 882
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/639 (39%), Positives = 375/639 (58%), Gaps = 58/639 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFL-----ESGITID 135
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI R +G G+ +D
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLI---REGDGVAAKAQASKGVELD 57
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
R+ V + N A G +PF+ ++V E ++ + G+++I
Sbjct: 58 ATRKQVEEMIGKGN------AVPNGH-------IPFTPHARQVLELSLREALQLGHSYIG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL +G +VL ++GVD+ L + ++G + EG + +
Sbjct: 105 TEHILLGLIREGEGVGTQVLIKMGVDLGDLRTATIDMIRG--SHEGGDAGKGDLANAGGV 162
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S K G+T ++ L+QF +LT A+E +DPVIGR EI+R++ +L RRTKNNP+
Sbjct: 163 SNKG------GQTGSAILDQFGRNLTQEAAEGKLDPVIGRANEIERVMVVLSRRTKNNPV 216
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++
Sbjct: 217 LIGEPGVGKTAVVEGLAQKIHNGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVL 276
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ GD+ILFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+
Sbjct: 277 KEIKTRGDIILFIDEIHTIVGAGSA-----DGALGASDMLKPLLARGELQTIGATTTDEY 331
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ +SEP+ + IL GLR +YE HH+ T +A+ +A LSAR
Sbjct: 332 RKYIEKDAALERRFQPIQVSEPTIAQTIEILKGLRGRYEHHHHVTITDKALQSAAELSAR 391
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI DR LPDKAIDL+DEAG+R I KR L+ PP+ +E+ T +
Sbjct: 392 YIQDRNLPDKAIDLIDEAGARLRI---KR--------LTAPPE--LKELDTKVDRISAQK 438
Query: 556 GSRLKYDDV--VASMGDTSEIV-----VESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+K D A + D+ E + + + D VV D IA V S +GIP
Sbjct: 439 DQAIKDQDFEKAAQLRDSQEKLEAERKEKEKAWHEGESDVKMVVDEDVIAEVVSSTTGIP 498
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+G+E++L KR+IGQDEAV+A+SR+++R+RVGLKDP RP + +F GPT
Sbjct: 499 VFKLTQAESKKLLGMEKELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPAGSFIFAGPT 558
Query: 669 GVGKTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
GVGKTELAK+LA F +R+ F +++ ++
Sbjct: 559 GVGKTELAKALAQFLFDDEDALIRVDMSEFSEKYSTSRL 597
>gi|206972226|ref|ZP_03233173.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
AH1134]
gi|206732800|gb|EDZ49975.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
AH1134]
Length = 811
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 260/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|289551675|ref|YP_003472579.1| ATP-dependent Clp protease, ATP-binding subunit ClpC/Negative
regulator of genetic competence clcC/mecB
[Staphylococcus lugdunensis HKU09-01]
gi|315659135|ref|ZP_07912000.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
lugdunensis M23590]
gi|385785222|ref|YP_005761395.1| putative stress response-related Clp ATPase [Staphylococcus
lugdunensis N920143]
gi|418416002|ref|ZP_12989205.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|289181206|gb|ADC88451.1| ATP-dependent Clp protease, ATP-binding subunit ClpC/Negative
regulator of genetic competence clcC/mecB
[Staphylococcus lugdunensis HKU09-01]
gi|315495859|gb|EFU84189.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
lugdunensis M23590]
gi|339895478|emb|CCB54806.1| putative stress response-related Clp ATPase [Staphylococcus
lugdunensis N920143]
gi|410873860|gb|EKS21794.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 819
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 263/622 (42%), Positives = 355/622 (57%), Gaps = 76/622 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K V + G A + ++ K+V E +++ +R +NF+
Sbjct: 59 KVITEVEKLI--------------GHGQEQAGTLRYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L D+N +++ + ++ K P + + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMGTKNAQTNK 156
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S T L S R DLT A + +DPVIGR EI R+I++L RRTKNNP+
Sbjct: 157 SNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRTKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA I+ EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIINNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS ED + IL GLR++YEAHH + +A++AA LS R
Sbjct: 321 RKNIEKDAALERRFQPVQVDEPSVEDTIEILKGLRDRYEAHHRINISDQALDAAAKLSDR 380
Query: 496 YISDRYLPDKAIDLVDEAGS----RAHIELFKRKK-EQQTCILSKPPDD--YWQEIRTVQ 548
Y+SDR+LPDKAIDL+DEA S R+H K EQ+ + K D + QE
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLRSHTTPTNLKSIEQEIETVKKEKDAAVHAQEFENAA 440
Query: 549 AMHEVVQGSRLKYDDVV-----ASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
+ + +Y+D A G +E+ E DIA V +
Sbjct: 441 NLRDKQSKLEKQYEDAKKEWQNAQGGSNTELSQE------------------DIAEVIAG 482
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIP+ +I E L+ LE L RVIGQ++AV +IS+AV+R+R GLKDP RP + +
Sbjct: 483 WTGIPLTKINETESDRLLNLEATLHGRVIGQNDAVTSISKAVRRARAGLKDPKRPIGSFI 542
Query: 664 FCGPTGVGKTELAKSLAACYFG 685
F GPTGVGKTELA++LA FG
Sbjct: 543 FLGPTGVGKTELARALAETMFG 564
>gi|375293788|ref|YP_005128328.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae INCA 402]
gi|371583460|gb|AEX47126.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae INCA 402]
Length = 878
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/616 (41%), Positives = 361/616 (58%), Gaps = 40/616 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + A +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPAGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS--LAKGVRENSI 255
+ LGL DG A +VL +LG D+ + + L G E E +
Sbjct: 107 FLLLGLIREGDGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGESPENNNDGEAVGAGTGA 166
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ R+ + L+QF +LT A E +DPV+GRE EI+RI+Q+L RRTKNNP+
Sbjct: 167 GRAGRGGGAGERSNSLVLDQFGRNLTQAAKEGKLDPVVGREQEIERIMQVLSRRTKNNPV 226
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ ++
Sbjct: 227 LIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQVYSLDLGSLVAGSRYRGDFEERLKKVL 286
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE+
Sbjct: 287 KEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDEY 341
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS + + IL GLR++YEAHH T A+ AA LS R
Sbjct: 342 RKHIEKDAALERRFQPVQVPEPSVDMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSDR 401
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI+DR+LPDKA+DL+DEAG+R I KR ++ + DD E+R + Q
Sbjct: 402 YINDRFLPDKAVDLIDEAGARMRI---KRMTAPESI---RKVDDQIAEVRREKEAAIDAQ 455
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ A + DT + E + D ++ A VG + IA V W+GIPV
Sbjct: 456 DF-----EKAAGLRDTERKLGEERAEKEKQWRSGDLEDIAEVGEEQIAEVLGNWTGIPVF 510
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L+ +EE+L +R+IGQD+AV ++SRA++R+R GLKDP RP+ + +F GP+GV
Sbjct: 511 KLTEEESSRLLHMEEELHRRIIGQDDAVKSVSRAIRRTRAGLKDPRRPSGSFIFAGPSGV 570
Query: 671 GKTELAKSLAACYFGS 686
GKTEL+KSLA FG
Sbjct: 571 GKTELSKSLANFLFGD 586
>gi|433602206|ref|YP_007034575.1| putative ATP-dependent Clp protease ATP-binding subunit
[Saccharothrix espanaensis DSM 44229]
gi|407880059|emb|CCH27702.1| putative ATP-dependent Clp protease ATP-binding subunit
[Saccharothrix espanaensis DSM 44229]
Length = 856
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/621 (41%), Positives = 367/621 (59%), Gaps = 68/621 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G S S +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG-----------------YSTSKE 150
Query: 259 TAALKSPGRTRAS-----ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN 313
TA +S GR + L+QF +LTA A E +DPVIGR EI+R++Q+L RRTKNN
Sbjct: 151 TA--ESGGRGEGTPSSSLVLDQFGRNLTASAREGKLDPVIGRTKEIERVMQVLSRRTKNN 208
Query: 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373
P+L+GE GVGKTA+ EGLA +V+ EVP L K++ +LD+G L+AG++ RG+ E R+
Sbjct: 209 PVLIGEPGVGKTAVVEGLAQMVVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKK 268
Query: 374 LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433
++ EI+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT D
Sbjct: 269 VLKEIRTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLD 323
Query: 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493
E+R EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ AA L+
Sbjct: 324 EYRKYVEKDPALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDSALVAAATLA 383
Query: 494 ARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD---------DYWQEI 544
RYI+DR+LPDKAIDL+DEAG+R I ++ PPD D +E
Sbjct: 384 DRYINDRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADVRREK 432
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW 604
+ + + ++L+ D +G +E D D A V + IA V + W
Sbjct: 433 ESAIDAQDFERAAKLR-DSEKQLLGQKAE---REKQWKDGDLDVVAEVDDEQIAEVLANW 488
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+GIPV ++T +E L+ +E++L KR+IGQ +AV A+S+A++R+R GLKDP RP+ + +F
Sbjct: 489 TGIPVFKLTEEETTRLLRMEDELHKRIIGQVDAVKAVSQAIRRTRAGLKDPKRPSGSFIF 548
Query: 665 CGPTGVGKTELAKSLAACYFG 685
GP+GVGKTEL+K+LA FG
Sbjct: 549 AGPSGVGKTELSKALAQFLFG 569
>gi|229148491|ref|ZP_04276747.1| Negative regulator of genetic competence [Bacillus cereus m1550]
gi|228634907|gb|EEK91480.1| Negative regulator of genetic competence [Bacillus cereus m1550]
Length = 811
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 260/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NASTP------TLDSLARDLTVVARENRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|302530766|ref|ZP_07283108.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4]
gi|302439661|gb|EFL11477.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4]
Length = 849
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 252/616 (40%), Positives = 371/616 (60%), Gaps = 57/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G E +++ SG
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSGYQTGE-----------KSTESGS 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF ++T A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 157 GRGEGTP--SSSLVLDQFGRNMTVLAREGKLDPVIGRGKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQSIVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 275 KTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLEEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 330 IEKDAALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV-- 554
DR+LPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADVRRDKESAID 438
Query: 555 -----QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ +RL+ D+ +G E D D A V + IA V + W+GIPV
Sbjct: 439 AQDFERAARLR-DEEKQLLGQKGE---REKQWKDGDLDVVAEVDDEQIAEVLANWTGIPV 494
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+G
Sbjct: 495 FKLTEEETTRLLRMEDELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPSG 554
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA+ FG
Sbjct: 555 VGKTELSKALASFLFG 570
>gi|418637208|ref|ZP_13199533.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
lugdunensis VCU139]
gi|374839348|gb|EHS02862.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
lugdunensis VCU139]
Length = 819
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 263/622 (42%), Positives = 355/622 (57%), Gaps = 76/622 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K V + G A + ++ K+V E +++ +R +NF+
Sbjct: 59 KVITEVEKLI--------------GHGQEQAGTLRYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L D+N +++ + ++ K P + + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMGTKNAQTNK 156
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S T L S R DLT A + +DPVIGR EI R+I++L RRTKNNP+
Sbjct: 157 SNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRTKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA I+ EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIINNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS ED + IL GLR++YEAHH + +A++AA LS R
Sbjct: 321 RKNIEKDAALERRFQPVQVDEPSVEDTIEILKGLRDRYEAHHRINISDQALDAAAKLSDR 380
Query: 496 YISDRYLPDKAIDLVDEAGS----RAHIELFKRKK-EQQTCILSKPPDD--YWQEIRTVQ 548
Y+SDR+LPDKAIDL+DEA S R+H K EQ+ + K D + QE
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLRSHTTPTNLKSIEQEIETVKKEKDAAVHAQEFENAA 440
Query: 549 AMHEVVQGSRLKYDDVV-----ASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
+ + +Y+D A G +E+ E DIA V +
Sbjct: 441 NLRDKQSKLEKQYEDAKKEWQNAQGGSNTELSQE------------------DIAEVIAG 482
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIP+ +I E L+ LE L RVIGQ++AV +IS+AV+R+R GLKDP RP + +
Sbjct: 483 WTGIPLTKINETESDRLLNLEATLHGRVIGQNDAVTSISKAVRRARAGLKDPKRPIGSFI 542
Query: 664 FCGPTGVGKTELAKSLAACYFG 685
F GPTGVGKTELA++LA FG
Sbjct: 543 FLGPTGVGKTELARALAETMFG 564
>gi|284034301|ref|YP_003384232.1| ATPase AAA-2 domain-containing protein [Kribbella flavida DSM
17836]
gi|283813594|gb|ADB35433.1| ATPase AAA-2 domain protein [Kribbella flavida DSM 17836]
Length = 843
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/619 (41%), Positives = 367/619 (59%), Gaps = 65/619 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLSHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQAPSG-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNKVRQQVIQLLSGYQGKE------------------ 149
Query: 259 TAALKSPGRTRASA---LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
TA+ +P S+ L+QF + T A E +DPVIGRETEI+R++Q+L RRTKNNP+
Sbjct: 150 TASAGAPAEGAPSSSLVLDQFGRNYTQSARESKLDPVIGRETEIERVMQVLSRRTKNNPV 209
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAI EGLA +IV+ +VP L K+I SLD+G L+AG++ RG+ E R+ ++
Sbjct: 210 LIGEPGVGKTAIVEGLAQQIVRGDVPETLKDKQIYSLDLGALVAGSRYRGDFEERLKKVL 269
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ GD++LFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+
Sbjct: 270 KEIRTRGDIVLFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEY 324
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ A L+ R
Sbjct: 325 RKYVEKDAALERRFQPIQVAEPSIAHTIEILKGLRDRYEAHHRVTITDAALVNAAQLADR 384
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEV 553
YISDR+LPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E
Sbjct: 385 YISDRFLPDKAIDLIDEAGARLRIRR-----------MTAPPDLREFDEKIANVRREKE- 432
Query: 554 VQGSRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSG 606
S + D AS+ D + ++ + A D D A V + IA V S +G
Sbjct: 433 ---SAIDAQDFERAASLRDDEKKLINAKAEREKQWKAGDMDVVAEVDEELIAEVLSTATG 489
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T +E L+ +E++L KR +GQ +AV A+SR+++R+R GLKDP RP+ + +F G
Sbjct: 490 IPVFKLTEEESSRLLDMEKELAKRYVGQTDAVKALSRSIRRTRAGLKDPRRPSGSFIFAG 549
Query: 667 PTGVGKTELAKSLAACYFG 685
P+GVGKTEL+K+L FG
Sbjct: 550 PSGVGKTELSKALTEFLFG 568
>gi|420164359|ref|ZP_14671089.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM095]
gi|394231748|gb|EJD77371.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM095]
Length = 773
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/625 (41%), Positives = 354/625 (56%), Gaps = 82/625 (13%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQEQMGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L +++ A V K +
Sbjct: 104 GTEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPE 146
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+S K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP
Sbjct: 147 MSNKNAQANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV+ EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS
Sbjct: 320 YRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSD 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDY 540
RY+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAV-------H 432
Query: 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAV 600
QE + + +Y+D + + L +A + ++IA V
Sbjct: 433 AQEFENAANLRDKQSKLEKQYEDAKNEWKN-----AQGGLDTA--------LSEENIAEV 479
Query: 601 ASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTA 660
+ W+GIP+ +I E L+ LE+ L KRVIGQ++AV +IS+AV+R+R GLKDP RP
Sbjct: 480 IAGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIG 539
Query: 661 AMLFCGPTGVGKTELAKSLAACYFG 685
+ +F GPTGVGKTELA++LA FG
Sbjct: 540 SFIFLGPTGVGKTELARALAESMFG 564
>gi|294787498|ref|ZP_06752751.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Parascardovia
denticolens F0305]
gi|315226925|ref|ZP_07868713.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Parascardovia
denticolens DSM 10105 = JCM 12538]
gi|294484854|gb|EFG32489.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Parascardovia
denticolens F0305]
gi|315121057|gb|EFT84189.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Parascardovia
denticolens DSM 10105 = JCM 12538]
Length = 862
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 251/611 (41%), Positives = 366/611 (59%), Gaps = 46/611 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+ +D AR
Sbjct: 1 MFERFTDRARRVIVLAQEEARALKHNYIGTEHLLLGLIREGEGVAAKSLASKGVELDAAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + + AA G +PF+ ++V E ++ + G+++I EH
Sbjct: 61 QQVEEMIGKGS------AAPTGH-------IPFTPHARQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++GVD+ +L + + R+ S + + SG
Sbjct: 108 ILLGLIHEGEGVGTQVLVKMGVDIANLRTTVIDSI--------RDTSAGSSTGQMANSGG 159
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A R+ +S L+QF +L A + +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 160 VA--DKTNRSGSSLLDQFGRNLAQEAKDGKLDPVIGRSNEIERVMVVLSRRTKNNPVLIG 217
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +IV +VP L K+I +LD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 218 EPGVGKTAVVEGLAEKIVADDVPETLKDKQIYALDLGSMIAGSRYRGDFEERLKKVLKEI 277
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
Q GDV+LFIDE+HT++G+G+ G G S++LKP L RGELQ I +TT +E+R
Sbjct: 278 QVRGDVVLFIDEIHTIVGAGSAD-GAMGA----SDMLKPMLARGELQTIGATTTEEYRKY 332
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EP+ + + IL GLR+KYE HH+ T EAI AA LS+RYI
Sbjct: 333 IEKDAALERRFQPIQVAEPTIAETIEILKGLRKKYEDHHHVTITDEAIQAAAELSSRYIQ 392
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I KR L+ P +++ + + Q
Sbjct: 393 DRHLPDKAIDLIDEAGARLRI---KR--------LTAPSALKELDMKVAKVKADKDQAIA 441
Query: 559 LKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D E + + + D VV D IA V S +GIPV ++T
Sbjct: 442 DQDFEKAASLRDAQEKLEQERKDKEKSWREGESDVSMVVTEDTIAHVISSSTGIPVFKLT 501
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+G+E+ L KRVIGQDEAV+A++R+++R+RVGLKDP RP+ + +F GPTGVGKT
Sbjct: 502 ETESKKLLGMEDALHKRVIGQDEAVSALARSIRRARVGLKDPKRPSGSFIFAGPTGVGKT 561
Query: 674 ELAKSLAACYF 684
ELAK+LA F
Sbjct: 562 ELAKALAEYLF 572
>gi|228950630|ref|ZP_04112764.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229067847|ref|ZP_04201164.1| Negative regulator of genetic competence [Bacillus cereus F65185]
gi|423422315|ref|ZP_17399346.1| chaperone ClpB [Bacillus cereus BAG3X2-2]
gi|423439463|ref|ZP_17416401.1| chaperone ClpB [Bacillus cereus BAG4X12-1]
gi|423507892|ref|ZP_17484459.1| chaperone ClpB [Bacillus cereus HD73]
gi|449086748|ref|YP_007419189.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|228715206|gb|EEL67065.1| Negative regulator of genetic competence [Bacillus cereus F65185]
gi|228808981|gb|EEM55466.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401112817|gb|EJQ20691.1| chaperone ClpB [Bacillus cereus BAG4X12-1]
gi|401120032|gb|EJQ27833.1| chaperone ClpB [Bacillus cereus BAG3X2-2]
gi|402442679|gb|EJV74600.1| chaperone ClpB [Bacillus cereus HD73]
gi|449020505|gb|AGE75668.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 811
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 264/624 (42%), Positives = 364/624 (58%), Gaps = 79/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRA--------------HIELFKRKKEQQTCILSKPPDDYWQEIRT 546
+LPDKAIDL+DEA S+ + L + +KE+ + S QE
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSYTTPPNLKELEVNLEEIRKEKDAAVQS-------QEFEK 439
Query: 547 VQAMHEVVQGSRLKYDDVVASM-----GDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
++ ++ Q R K +D + SE+ VE DIA V
Sbjct: 440 AASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVE------------------DIANVV 481
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
S W+ IPV ++ E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP +
Sbjct: 482 STWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGS 541
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 542 FIFLGPTGVGKTELARALAESMFG 565
>gi|423480226|ref|ZP_17456916.1| chaperone ClpB [Bacillus cereus BAG6X1-2]
gi|401149231|gb|EJQ56706.1| chaperone ClpB [Bacillus cereus BAG6X1-2]
Length = 811
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/610 (42%), Positives = 365/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E++V+IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPNLEESVQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEKQGQENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L R+IGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRLIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|300859188|ref|YP_003784171.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis FRC41]
gi|384505360|ref|YP_005682030.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 1002]
gi|300686642|gb|ADK29564.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis FRC41]
gi|302331444|gb|ADL21638.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 1002]
Length = 885
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/617 (41%), Positives = 366/617 (59%), Gaps = 41/617 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPVGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
+ LGL +G A +VL +LG D+ + + L G +E E + + G + +G
Sbjct: 107 FLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSGYEGRESPENNESGGEAVGAGTG 166
Query: 258 KTAALKSPG---RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
A + G R+ + L+QF +LT A + +DPVIGRE EI+RI+Q+L RRTKNNP
Sbjct: 167 AARAGRGSGAGDRSNSLVLDQFGRNLTQAAKDGKLDPVIGREKEIERIMQVLSRRTKNNP 226
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ +
Sbjct: 227 VLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKV 286
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE
Sbjct: 287 LKEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDE 341
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA LS
Sbjct: 342 YRKHIEKDAALERRFQPVNVPEPSVEMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSD 401
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI+DR+LPDKA+DL+DEAG+R I+ + + DD E+R +
Sbjct: 402 RYINDRFLPDKAVDLIDEAGARMRIQRMTAPESIRKV------DDRIAEVRREKEAAIDA 455
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPV 609
Q + A + DT + E + D +E A VG + IA V W+GIPV
Sbjct: 456 QDF-----EKAAGLRDTERKLNEERAEKEKQWRSGDLEEIAEVGEEQIAEVLGNWTGIPV 510
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV A+SRA++R+R GLKDP RP+ + +F GP+G
Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIRRTRAGLKDPRRPSGSFIFAGPSG 570
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 571 VGKTELSKALANFLFGD 587
>gi|385653550|ref|ZP_10048103.1| ATP-dependent Clp protease, ATP-binding subunit [Leucobacter
chromiiresistens JG 31]
Length = 841
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/613 (41%), Positives = 369/613 (60%), Gaps = 53/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFT+RA + V+ +Q EAK L + + T+H+LLGLI E G+ KA E
Sbjct: 1 MFERFTDRARRVVVLAQEEAKMLNHNYIGTEHILLGLIHEG--------EGVAA-KALEQ 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + Q TD +P A +PF+ K+V E ++ + G+N+I EHI
Sbjct: 52 LEISLDAVRAQVTDIIGTGQQP--PAGHIPFTPRAKKVLELSLREALQLGHNYIGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A +VL +LG D+N + + L G A G+E S
Sbjct: 110 LGLIREGEGVAAQVLVKLGADLNRVRQTVIQLLSGYQA--GKE------------SATVG 155
Query: 261 ALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A +S G ++ S L+QF +LT A E +DPVIGRE E++R++QIL RR+KNNP+L+GE
Sbjct: 156 APESGGESKGSQVLDQFGRNLTQAAREGKLDPVIGREKEVERVMQILSRRSKNNPVLIGE 215
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTA+ EGLA I++ EVP L K++ LD+G ++AG++ RG+ E R+ + EI+
Sbjct: 216 PGVGKTAVVEGLAQAIIKGEVPETLKDKQVYVLDLGSMIAGSRYRGDFEERLKKVTKEIR 275
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
GD+I+FIDE+HTL+G+G +G +D +N+LKP L RGELQ I +TT DE+R F
Sbjct: 276 NRGDIIIFIDEIHTLVGAGAA----EGA-IDAANILKPMLARGELQTIGATTLDEYRKHF 330
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQ + ++EPS ++ IL GLR++YEAHH T AI AAV+L+ RY+ D
Sbjct: 331 EKDAALERRFQSIQVAEPSLPHSINILKGLRDRYEAHHKVSITDGAIVAAVNLADRYVQD 390
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQG 556
R+LPDKAIDL+DEAG+R + ILS PP+ ++ ++I V+A E ++G
Sbjct: 391 RFLPDKAIDLIDEAGARLRL-----------SILSSPPELREFDEKIAVVRAEKEQAIEG 439
Query: 557 SRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ A+ D + ++ L + + A V IA V + +GIPV +
Sbjct: 440 QDF---EAAANKRDEEKKLIAERLRLEKQWRSGNVATQAEVDEGLIAEVLAQATGIPVFK 496
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T +E L +EE L +RVIGQ+EA++A+++ ++R R GLKDP RP+ + +F GPTGVG
Sbjct: 497 LTEEETSRLRFMEEALHQRVIGQNEAISALAKTIRRQRAGLKDPKRPSGSFIFAGPTGVG 556
Query: 672 KTELAKSLAACYF 684
KTELAK+LA F
Sbjct: 557 KTELAKALAEFLF 569
>gi|229009591|ref|ZP_04166817.1| Negative regulator of genetic competence [Bacillus mycoides DSM
2048]
gi|229053928|ref|ZP_04195362.1| Negative regulator of genetic competence [Bacillus cereus AH603]
gi|423370664|ref|ZP_17348069.1| chaperone ClpB [Bacillus cereus VD142]
gi|423456297|ref|ZP_17433150.1| chaperone ClpB [Bacillus cereus BAG5X1-1]
gi|423473107|ref|ZP_17449849.1| chaperone ClpB [Bacillus cereus BAG6O-2]
gi|423526416|ref|ZP_17502865.1| chaperone ClpB [Bacillus cereus HuA4-10]
gi|423556922|ref|ZP_17533225.1| chaperone ClpB [Bacillus cereus MC67]
gi|423602389|ref|ZP_17578389.1| chaperone ClpB [Bacillus cereus VD078]
gi|423665405|ref|ZP_17640544.1| chaperone ClpB [Bacillus cereus VDM022]
gi|228721346|gb|EEL72867.1| Negative regulator of genetic competence [Bacillus cereus AH603]
gi|228751613|gb|EEM01413.1| Negative regulator of genetic competence [Bacillus mycoides DSM
2048]
gi|401073400|gb|EJP81822.1| chaperone ClpB [Bacillus cereus VD142]
gi|401130896|gb|EJQ38551.1| chaperone ClpB [Bacillus cereus BAG5X1-1]
gi|401163466|gb|EJQ70812.1| chaperone ClpB [Bacillus cereus HuA4-10]
gi|401194237|gb|EJR01229.1| chaperone ClpB [Bacillus cereus MC67]
gi|401225928|gb|EJR32472.1| chaperone ClpB [Bacillus cereus VD078]
gi|401290312|gb|EJR96007.1| chaperone ClpB [Bacillus cereus VDM022]
gi|402426605|gb|EJV58726.1| chaperone ClpB [Bacillus cereus BAG6O-2]
Length = 811
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/610 (42%), Positives = 365/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E++V+IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPNLEESVQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEKQGQENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L R+IGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRLIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|375289379|ref|YP_005123920.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 3/99-5]
gi|371576668|gb|AEX40271.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 3/99-5]
Length = 885
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/617 (41%), Positives = 366/617 (59%), Gaps = 41/617 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPVGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
+ LGL +G A +VL +LG D+ + + L G +E E + + G + +G
Sbjct: 107 FLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSGYEGRESPENNESGGEAVGAGTG 166
Query: 258 KTAALKSPG---RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
A + G R+ + L+QF +LT A + +DPVIGRE EI+RI+Q+L RRTKNNP
Sbjct: 167 AARAGRGSGAGDRSNSLVLDQFGRNLTQAAKDGKLDPVIGREKEIERIMQVLSRRTKNNP 226
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ +
Sbjct: 227 VLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKV 286
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE
Sbjct: 287 LKEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDE 341
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA LS
Sbjct: 342 YRKHIEKDAALERRFQPVNVPEPSVEMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSD 401
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI+DR+LPDKA+DL+DEAG+R I+ + + DD E+R +
Sbjct: 402 RYINDRFLPDKAVDLIDEAGARMRIQRMTAPESIRKV------DDRIAEVRREKEAAIDA 455
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPV 609
Q + A + DT + E + D +E A VG + IA V W+GIPV
Sbjct: 456 QDF-----EKAAGLRDTERKLNEERAEKEKQWRSGDLEEIAEVGEEQIAEVLGNWTGIPV 510
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV A+SRA++R+R GLKDP RP+ + +F GP+G
Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIRRTRAGLKDPRRPSGSFIFAGPSG 570
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 571 VGKTELSKALANFLFGD 587
>gi|120406306|ref|YP_956135.1| ATPase [Mycobacterium vanbaalenii PYR-1]
gi|119959124|gb|ABM16129.1| ATPase AAA-2 domain protein [Mycobacterium vanbaalenii PYR-1]
Length = 847
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/613 (41%), Positives = 363/613 (59%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKE---------TAEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGEAGNP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|163938089|ref|YP_001642973.1| ATPase [Bacillus weihenstephanensis KBAB4]
gi|229131089|ref|ZP_04260001.1| Negative regulator of genetic competence [Bacillus cereus
BDRD-ST196]
gi|229165070|ref|ZP_04292865.1| Negative regulator of genetic competence [Bacillus cereus AH621]
gi|423485381|ref|ZP_17462063.1| chaperone ClpB [Bacillus cereus BtB2-4]
gi|423491106|ref|ZP_17467750.1| chaperone ClpB [Bacillus cereus CER057]
gi|423502098|ref|ZP_17478715.1| chaperone ClpB [Bacillus cereus CER074]
gi|423514654|ref|ZP_17491161.1| chaperone ClpB [Bacillus cereus HuA2-1]
gi|423514934|ref|ZP_17491415.1| chaperone ClpB [Bacillus cereus HuA2-4]
gi|423596971|ref|ZP_17572981.1| chaperone ClpB [Bacillus cereus VD048]
gi|423671531|ref|ZP_17646535.1| chaperone ClpB [Bacillus cereus VDM034]
gi|423672665|ref|ZP_17647604.1| chaperone ClpB [Bacillus cereus VDM062]
gi|163860286|gb|ABY41345.1| ATPase AAA-2 domain protein [Bacillus weihenstephanensis KBAB4]
gi|228618333|gb|EEK75363.1| Negative regulator of genetic competence [Bacillus cereus AH621]
gi|228652302|gb|EEL08227.1| Negative regulator of genetic competence [Bacillus cereus
BDRD-ST196]
gi|401151492|gb|EJQ58943.1| chaperone ClpB [Bacillus cereus CER074]
gi|401162031|gb|EJQ69390.1| chaperone ClpB [Bacillus cereus CER057]
gi|401168435|gb|EJQ75698.1| chaperone ClpB [Bacillus cereus HuA2-4]
gi|401218148|gb|EJR24832.1| chaperone ClpB [Bacillus cereus VD048]
gi|401291920|gb|EJR97585.1| chaperone ClpB [Bacillus cereus VDM034]
gi|401311525|gb|EJS16820.1| chaperone ClpB [Bacillus cereus VDM062]
gi|402441572|gb|EJV73522.1| chaperone ClpB [Bacillus cereus BtB2-4]
gi|402442054|gb|EJV73998.1| chaperone ClpB [Bacillus cereus HuA2-1]
Length = 811
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/610 (42%), Positives = 365/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E++V+IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPNLEESVQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEKQGQENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L R+IGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRLIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|376288455|ref|YP_005161021.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae BH8]
gi|371585789|gb|AEX49454.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae BH8]
Length = 877
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 257/617 (41%), Positives = 361/617 (58%), Gaps = 42/617 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + A +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPAGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS--LAKGVRENSI 255
+ LGL DG A +VL +LG D+ + + L G E E +
Sbjct: 107 FLLLGLIREGDGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGESPENNNEGEAVGAGTGA 166
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ R+ + L+QF +LT A E +DPV+GRE EI+RI+Q+L RRTKNNP+
Sbjct: 167 GRAGRGGGAGERSNSLVLDQFGRNLTQAAKEGKLDPVVGREQEIERIMQVLSRRTKNNPV 226
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ ++
Sbjct: 227 LIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQVYSLDLGSLVAGSRYRGDFEERLKKVL 286
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE+
Sbjct: 287 KEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDEY 341
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS + + IL GLR++YEAHH T A+ AA LS R
Sbjct: 342 RKHIEKDAALERRFQPVQVPEPSVDMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSDR 401
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM----- 550
YI+DR+LPDKA+DL+DEAG+R I KR ++ + DD E+R +
Sbjct: 402 YINDRFLPDKAVDLIDEAGARMRI---KRMTAPESI---RKVDDQIAEVRREKEAAIDAQ 455
Query: 551 -HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
E G R D +G+ E S S +D A VG + IA V W+GIPV
Sbjct: 456 DFEKAAGLR----DTERKLGE-ERAEKEKQWRSGSLED-IAEVGEEQIAEVLGNWTGIPV 509
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +EE+L KR+IGQD+AV ++SRA++R+R GLKDP RP+ + +F GP+G
Sbjct: 510 FKLTEEESSRLLHMEEELHKRIIGQDDAVKSVSRAIRRTRAGLKDPRRPSGSFIFAGPSG 569
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+KSLA FG
Sbjct: 570 VGKTELSKSLANFLFGD 586
>gi|41406559|ref|NP_959395.1| ClpC [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41394908|gb|AAS02778.1| ClpC [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 843
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 360/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGQVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRYLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|453364329|dbj|GAC79902.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
malaquae NBRC 108250]
Length = 848
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/613 (42%), Positives = 366/613 (59%), Gaps = 49/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLA-KGVRENSISG 257
I LGL +G A +VL +LG D+N + + L G +G+EP A G R N
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPETAGTGGRSNDSGT 164
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ +L L+QF +LT ASE +DPVIGRE E++RI+Q+L RRTKNNP+L+
Sbjct: 165 PSTSL---------VLDQFGRNLTTAASEGKLDPVIGREKEVERIMQVLSRRTKNNPVLI 215
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV VP L K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 216 GEPGVGKTAVVEGLAQAIVSGNVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKE 275
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I GD+ILFIDE+H L+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 276 INTRGDIILFIDELHQLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRK 330
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EPS E + IL GLR++YE HH T A+ AA L+ RYI
Sbjct: 331 YIEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYEQHHKVSITDGALAAAASLADRYI 390
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDL+DEAG+R I ++ PPD + R A E
Sbjct: 391 NDRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDDRIADARKEKESAI 439
Query: 558 RLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + AS+ D + +V A D D + V + IA V W+GIPV ++
Sbjct: 440 DAQDFEKAASLRDKEKKLVSERAEREKQWRAGDLDIVSEVDDEQIAEVLGNWTGIPVFKL 499
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T +E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGK
Sbjct: 500 TEEETKRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGK 559
Query: 673 TELAKSLAACYFG 685
TEL+K+LA FG
Sbjct: 560 TELSKALANFLFG 572
>gi|237784954|ref|YP_002905659.1| ATP-dependent Clp protease [Corynebacterium kroppenstedtii DSM
44385]
gi|237757866|gb|ACR17116.1| ATP-dependent Clp protease [Corynebacterium kroppenstedtii DSM
44385]
Length = 903
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 261/617 (42%), Positives = 381/617 (61%), Gaps = 41/617 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGI-TIDKARE 139
+FERFT+RA + V+ +Q EA++L + + T+H+LLGLI R G + ++ +RE
Sbjct: 1 MFERFTDRARRVVVLAQEEARALNHNYIGTEHILLGLI---REGEGVAAKALESMGISRE 57
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
AV S + +D +G S +PF+ K+V E ++ + G+ +I EHI
Sbjct: 58 AVRS--------EVEDIIGEGSQPPSGY-IPFTPRAKKVLELSLREALQLGHKYIGTEHI 108
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAK--EGREPSLAK----GVREN 253
LGL +G A +VL +LG D+ + + L G + E +EP ++ GV
Sbjct: 109 LLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSGYEGQGDESQEPGTSEPAGAGVGSA 168
Query: 254 SISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN 313
++ G+++ +S ++ + L+QF +LT A + +DPV+GRE EI+RI+Q+L RRTKNN
Sbjct: 169 TL-GRSSNNESGRKSNSLVLDQFGRNLTQAAKDGKLDPVVGREKEIERIMQVLSRRTKNN 227
Query: 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373
P+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLDMG L+AG++ RG+ E R+
Sbjct: 228 PVLIGEPGVGKTAVVEGLALDIVNGKVPEILKDKQLYSLDMGSLVAGSRYRGDFEERLKK 287
Query: 374 LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433
++ EI + GD+ILFIDE+HT++G+G +G +D ++LLKP L RGELQ I +TT D
Sbjct: 288 VLKEINQRGDIILFIDEIHTIVGAGAA----EGA-IDAASLLKPKLARGELQTIGATTLD 342
Query: 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493
E+R EKD AL RRFQPV + EPS E +V IL GLR KYEAHH+ T A+ AA LS
Sbjct: 343 EYRKHIEKDAALERRFQPVQVPEPSVELSVEILKGLRPKYEAHHHVSITDAALVAAASLS 402
Query: 494 ARYISDRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDDYWQEIRTVQ 548
RYI+DR+LPDKA+DL+DEAG+R I+ RK +++ + K +E
Sbjct: 403 DRYINDRFLPDKAVDLIDEAGARMRIKRMTAPESLRKVDEKIAKIRK-----QKEAAIDD 457
Query: 549 AMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
E G R D +G+ E E S +D A VG + IA V + W+GIP
Sbjct: 458 QDFEKAAGLR----DQERKLGEERE-EKERQWRSGELED-VAEVGEEQIAEVLANWTGIP 511
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T +E L+ +EE+L KR+IGQ++AV ++SRA++R+R GLKDP RP+ + +F GP+
Sbjct: 512 VFKLTEEESDRLLHMEEELHKRIIGQEDAVKSVSRAIRRTRAGLKDPRRPSGSFIFAGPS 571
Query: 669 GVGKTELAKSLAACYFG 685
GVGKTEL+K+LA FG
Sbjct: 572 GVGKTELSKALAEFLFG 588
>gi|354612690|ref|ZP_09030634.1| ATPase AAA-2 domain protein [Saccharomonospora paurometabolica YIM
90007]
gi|353222993|gb|EHB87286.1| ATPase AAA-2 domain protein [Saccharomonospora paurometabolica YIM
90007]
Length = 850
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/618 (41%), Positives = 375/618 (60%), Gaps = 60/618 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSG---YQGKEPAEA----------- 153
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A + G +S L+QF +LTA A E +DPVIGR +EI+R++Q+L RRTKNNP+++
Sbjct: 154 -GAGRGEGTPSSSLVLDQFGRNLTAAAREGNLDPVIGRNSEIERVMQVLSRRTKNNPVMI 212
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 213 GEPGVGKTAVVEGLAQNIVKGEVPETLKEKQLYTLDLGSLVAGSRYRGDFEERLKKVLKE 272
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 273 IKTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLEEYRK 327
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ AA L+ RYI
Sbjct: 328 YIEKDAALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRISITDSALVAAASLADRYI 387
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV- 554
+DRYLPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E
Sbjct: 388 NDRYLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADVRRDKESAI 436
Query: 555 ------QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ +RL+ D+ +G SE D D A V + IA V + W+GIP
Sbjct: 437 DAQDFERAARLR-DEEKTLLGQKSE---REKQWKDGDLDVVAEVDDEQIAEVLAHWTGIP 492
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T +E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+
Sbjct: 493 VFRLTEEETTRLLRMEDELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPS 552
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL+K+LA FG
Sbjct: 553 GVGKTELSKALANFLFGE 570
>gi|404424419|ref|ZP_11006001.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium
fortuitum subsp. fortuitum DSM 46621]
gi|403651405|gb|EJZ06539.1| negative regulator of genetic competence ClpC/mecB [Mycobacterium
fortuitum subsp. fortuitum DSM 46621]
Length = 842
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/613 (41%), Positives = 363/613 (59%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGG---------R 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGESGNP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVV-----ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVAQRGEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|228937384|ref|ZP_04100030.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228970270|ref|ZP_04130929.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228976840|ref|ZP_04137252.1| Negative regulator of genetic competence [Bacillus thuringiensis
Bt407]
gi|384184166|ref|YP_005570062.1| negative regulator of genetic competence clpC/mecB [Bacillus
thuringiensis serovar chinensis CT-43]
gi|410672453|ref|YP_006924824.1| negative regulator of genetic competence ClpC/MecB [Bacillus
thuringiensis Bt407]
gi|423387432|ref|ZP_17364686.1| chaperone ClpB [Bacillus cereus BAG1X1-2]
gi|423526620|ref|ZP_17503065.1| chaperone ClpB [Bacillus cereus HuB1-1]
gi|452196459|ref|YP_007476540.1| ATP-dependent Clp protease [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228782810|gb|EEM30976.1| Negative regulator of genetic competence [Bacillus thuringiensis
Bt407]
gi|228789379|gb|EEM37299.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228822217|gb|EEM68199.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326937875|gb|AEA13771.1| negative regulator of genetic competence clpC/mecB [Bacillus
thuringiensis serovar chinensis CT-43]
gi|401629015|gb|EJS46843.1| chaperone ClpB [Bacillus cereus BAG1X1-2]
gi|402455660|gb|EJV87441.1| chaperone ClpB [Bacillus cereus HuB1-1]
gi|409171582|gb|AFV15887.1| negative regulator of genetic competence ClpC/MecB [Bacillus
thuringiensis Bt407]
gi|452101852|gb|AGF98791.1| ATP-dependent Clp protease [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 811
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/610 (42%), Positives = 365/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSAS 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++++IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L R+IGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRLIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|365851807|ref|ZP_09392222.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
parafarraginis F0439]
gi|363715748|gb|EHL99171.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
parafarraginis F0439]
Length = 830
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 247/606 (40%), Positives = 360/606 (59%), Gaps = 37/606 (6%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSI 144
FT A + +Q +AK + T+HLLLGL+ E +GI ++ ++
Sbjct: 5 FTPSAKNVLTIAQEQAKKFKHQAIGTEHLLLGLLIE--------TNGIAYKSLQQFSITA 56
Query: 145 WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLF 204
T + K SS +P+S K V A E+++ G + EHI L L
Sbjct: 57 EDITEEVERFAGYGNLKDLSSNDYLPYSPKAKEVLAQAGEFAKKNGVPKVGTEHILLSLL 116
Query: 205 TVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKS 264
T + + R+L LG+D++ + V + R+ ++ G +++S K A +
Sbjct: 117 TDETILSSRILINLGLDLSQIRKVTL-----------RKMGISGGSMASNMSSKRGARQP 165
Query: 265 PGR-TRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323
+ ++ ++ DLT A E +DP IGR E++R++QIL RRTKNNP+L+GE GVG
Sbjct: 166 KQKDSKTPTIDSLARDLTEMARENRLDPTIGRGLEVKRVVQILARRTKNNPVLIGEPGVG 225
Query: 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGD 383
KTAIAEGLA RIV +VP ++ KR+M LDMG L+AG K RGE E R+ +I EI + G+
Sbjct: 226 KTAIAEGLAERIVNGDVPGDMVHKRLMMLDMGSLVAGTKYRGEFEDRLKKVIEEIYQDGN 285
Query: 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDK 443
+ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQ I +TT DE++ E D
Sbjct: 286 IILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQLIGATTLDEYQKYIESDA 340
Query: 444 ALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503
AL RRF V++ EP+ ++ V+IL GLR KYE HH+ + T EAI+AAV LS+RYISDR+LP
Sbjct: 341 ALERRFAKVMVDEPTTDETVQILKGLRPKYEQHHHVEITDEAIDAAVRLSSRYISDRFLP 400
Query: 504 DKAIDLVDEAGSRAHIELFKRKKEQQTCILS--KPPDDYWQEIRTVQAMHEVVQGSRLKY 561
DKAIDL+DEA ++ I+ Q + ++ K D +E+ A + + S+L+
Sbjct: 401 DKAIDLMDEAAAKVRIDHL-----QSSNVVDSHKKLSDLLEELNDALAAQDYEKASKLRK 455
Query: 562 DDVVASMGDTSEIVVESSLPSASDDDE-PAVVGPDDIAAVASLWSGIPVQQITADERMLL 620
+ D E+ E+ P +D P DIA + W+GIPV ++++ E L
Sbjct: 456 Q--ANKLQD--ELAKENEAPEEDEDAHYPVKETAQDIAEIVGEWTGIPVTRLSSTEADRL 511
Query: 621 VGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
V LE+ L +RV+GQ+EA++A+SR+++R+R GLKDPNRP + + GPTGVGKTELAK++A
Sbjct: 512 VNLEKVLHQRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMLLGPTGVGKTELAKAVA 571
Query: 681 ACYFGS 686
FGS
Sbjct: 572 EAVFGS 577
>gi|354558410|ref|ZP_08977665.1| ATPase AAA-2 domain protein [Desulfitobacterium metallireducens DSM
15288]
gi|353546888|gb|EHC16335.1| ATPase AAA-2 domain protein [Desulfitobacterium metallireducens DSM
15288]
Length = 823
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 274/620 (44%), Positives = 380/620 (61%), Gaps = 67/620 (10%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID--KAREA 140
ER+TERAVK + ++ EA+ +G ++V T+H+LLGL+AE +GI ++ K +E
Sbjct: 3 ERYTERAVKVLNLAKEEAQRMGHNVVGTEHILLGLVAEGEGIAAKALNGINVEPEKVKEQ 62
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ S+ G+P++ ++ F+ KRV E A E +R +G N+I EH+
Sbjct: 63 IESL------------VGIGQPYT--GEIGFTPRVKRVLELANEEARRQGVNYIGTEHLL 108
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL +GV + + L GE A++ P+ A + +GK
Sbjct: 109 LGLLMEGEGVAARVLLNMGVSPEKIWKQVIRLLGGE-AEDASMPAGANA----APTGKNV 163
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
PG T L +F DLT A E +DPV+GRE+E++R+IQIL RRTKNNP+L+GE
Sbjct: 164 G---PGNT--PTLNEFGRDLTQSAREGKLDPVVGRESELERVIQILSRRTKNNPVLIGEP 218
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAE LA RIVQ +VP L +KR+++LD+ ++AG+K RGE E R+ ++ EI+
Sbjct: 219 GVGKTAIAESLAQRIVQNKVPETLTNKRVVTLDISSVVAGSKYRGEFEERLKKVMEEIRI 278
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
G+VI+FIDE+HTLIG+G +D +N+LKP+L RGELQCI +TT DE+R E
Sbjct: 279 DGNVIVFIDELHTLIGAGAAE-----GAIDAANILKPALARGELQCIGATTLDEYRKYIE 333
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E AV IL GLR++YEAHH K T EAI AAV LS RYISDR
Sbjct: 334 KDAALERRFQPITVGEPTVEQAVEILKGLRDRYEAHHRTKITDEAIEAAVRLSDRYISDR 393
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA SR ++ F + PPD ++++ E V+ RLK
Sbjct: 394 FLPDKAIDLMDEAASRVRLDTF-----------NAPPD--------MKSLEEQVE--RLK 432
Query: 561 YDDVVASMGDTSEIVVE---------SSLPSASDDDE------PAVVGPDDIAAVASLWS 605
+ A + E E L D E + V DDI+ + + W+
Sbjct: 433 KEKEAAVLAQEFEKAAEIRDREHELREDLAQKRSDWESQRDVTKSSVTEDDISQIVASWT 492
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV++I +E L+ LEE L +RV+GQD+AVAA+++AV+R+R GLKDP RP + +F
Sbjct: 493 GIPVKKIAQEEGDRLLHLEETLHERVVGQDDAVAAVAKAVRRARAGLKDPKRPIGSFIFL 552
Query: 666 GPTGVGKTELAKSLAACYFG 685
GPTGVGKTELA++LA FG
Sbjct: 553 GPTGVGKTELARTLAEALFG 572
>gi|410582488|ref|ZP_11319594.1| ATPase with chaperone activity, ATP-binding subunit
[Thermaerobacter subterraneus DSM 13965]
gi|410505308|gb|EKP94817.1| ATPase with chaperone activity, ATP-binding subunit
[Thermaerobacter subterraneus DSM 13965]
Length = 834
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 263/617 (42%), Positives = 374/617 (60%), Gaps = 61/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R++ERA + ++ +Q EA+ L + V T+HLLLGLI R G L+S GI ++
Sbjct: 1 MFGRYSERAQRVILLAQEEARRLNYNYVGTEHLLLGLI---REGTGIAAKALQSLGINLE 57
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGK-PFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
+ R V I N QG+ ++ AK K V E A E +R G+N++
Sbjct: 58 QVRAEVEKIIGRGN------GPIQGEIGYTPRAK-------KVVMELAPEEARLLGHNYV 104
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL +G A +VL+ +G D++ + + L G +
Sbjct: 105 GTEHILLGLIREGEGVAAKVLENMGADLDRVRQTVIKLLGG------------------T 146
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+ AA + ++ L+ F DLT A E +DPVIGR+ EI+R+IQIL RRTKNNP
Sbjct: 147 AAPAPAARQRRQKSTTPVLDNFGRDLTQMAEEGKLDPVIGRDKEIERVIQILSRRTKNNP 206
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAI EGLA RI + +VP L +R+++LD+G L+AG+K RGE E R+ +
Sbjct: 207 VLIGEPGVGKTAIVEGLAQRIAEGKVPEILKDRRVVALDLGALVAGSKYRGEFEERLKKV 266
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI+++G++ILFIDE+HT+IG+G +D +++LKP+L RGELQ I +TT DE
Sbjct: 267 MDEIRRAGNIILFIDEMHTIIGAGAA-----EGAIDAASILKPALARGELQTIGATTLDE 321
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+++ EPS EDA++IL GLR++YEAHH + T +AI AAV L+
Sbjct: 322 YRKHVEKDAALERRFQPIMVEEPSVEDAIQILRGLRDRYEAHHRVEITDDAIVAAVKLAD 381
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYISDR+LPDKAIDL+DEA SRA ++ F PP+ E R + E
Sbjct: 382 RYISDRFLPDKAIDLIDEAASRARLQAF-----------VAPPELKEIEQRLEEIRKEKE 430
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPV 609
+ + + A++ D + +VE S+ +E VV DDIA + S W+GIPV
Sbjct: 431 AAVQSQEFEKAANLRDQEQKLVEELERKKSEWQQQQLNEKIVVTADDIAQIVSNWTGIPV 490
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+++ E L+ LEE L +R++GQD+AV A++RA++R+R GLKDP RP + +F GPTG
Sbjct: 491 RRLEQAESERLLKLEEILHERIVGQDDAVRAVARAIRRARAGLKDPRRPIGSFIFLGPTG 550
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELAK+LA FG
Sbjct: 551 VGKTELAKALAEALFGD 567
>gi|229040987|ref|ZP_04189750.1| Negative regulator of genetic competence [Bacillus cereus AH676]
gi|228727284|gb|EEL78478.1| Negative regulator of genetic competence [Bacillus cereus AH676]
Length = 811
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 260/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESTQILKGLRDRYEAHHRVFITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|302527020|ref|ZP_07279362.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4]
gi|302435915|gb|EFL07731.1| ATP-dependent chaperone ClpB [Streptomyces sp. AA4]
Length = 831
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/616 (40%), Positives = 371/616 (60%), Gaps = 57/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI ++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGIALEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G E +++ SG
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVLQLLSGYQTGE-----------KSTESGS 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF ++T A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 157 GRGEGTP--SSSLVLDQFGRNMTVLAREGKLDPVIGRGKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQSIVKGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 275 KTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLEEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 330 IEKDAALERRFQPIQVGEPSLEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV-- 554
DR+LPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E
Sbjct: 390 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADVRRDKESAID 438
Query: 555 -----QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ +RL+ D+ +G E D D A V + IA V + W+GIPV
Sbjct: 439 AQDFERAARLR-DEEKQLLGQKGE---REKQWKDGDLDVVAEVDDEQIAEVLANWTGIPV 494
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+G
Sbjct: 495 FKLTEEETTRLLRMEDELHKRIIGQEDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPSG 554
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA+ FG
Sbjct: 555 VGKTELSKALASFLFG 570
>gi|376243534|ref|YP_005134386.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae CDCE 8392]
gi|372106776|gb|AEX72838.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae CDCE 8392]
Length = 878
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/616 (41%), Positives = 360/616 (58%), Gaps = 40/616 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + A +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPAGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS--LAKGVRENSI 255
+ LGL DG A +VL +LG D+ + + L G E E +
Sbjct: 107 FLLLGLIREGDGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGESPENNNDGEAVGAGTGA 166
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ R+ + L+QF +LT A E +DPV+GRE EI+RI+Q+L RRTKNNP+
Sbjct: 167 GRAGRGGGAGERSNSLVLDQFGRNLTQAAKEGKLDPVVGREQEIERIMQVLSRRTKNNPV 226
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ ++
Sbjct: 227 LIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQVYSLDLGSLVAGSRYRGDFEERLKKVL 286
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE+
Sbjct: 287 KEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDEY 341
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS + + IL GLR++YEAHH T A+ AA LS R
Sbjct: 342 RKHIEKDAALERRFQPVQVPEPSVDMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSDR 401
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI+DR+LPDKA+DL+DEAG+R I KR ++ + DD E+R + Q
Sbjct: 402 YINDRFLPDKAVDLIDEAGARMRI---KRMTAPESI---RKVDDQIAEVRREKEAAIDAQ 455
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ A + DT + E + D ++ A VG + IA V W+GIPV
Sbjct: 456 DF-----EKAAGLRDTERKLGEERAEKEKQWRSGDLEDIAEVGEEQIAEVLGNWTGIPVF 510
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L+ +EE+L R+IGQD+AV ++SRA++R+R GLKDP RP+ + +F GP+GV
Sbjct: 511 KLTEEESSRLLHMEEELHTRIIGQDDAVKSVSRAIRRTRAGLKDPRRPSGSFIFAGPSGV 570
Query: 671 GKTELAKSLAACYFGS 686
GKTEL+KSLA FG
Sbjct: 571 GKTELSKSLANFLFGD 586
>gi|295395582|ref|ZP_06805776.1| ATP-dependent protease, ATPase subunit [Brevibacterium mcbrellneri
ATCC 49030]
gi|294971601|gb|EFG47482.1| ATP-dependent protease, ATPase subunit [Brevibacterium mcbrellneri
ATCC 49030]
Length = 870
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/613 (40%), Positives = 366/613 (59%), Gaps = 51/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESG--ITIDKAR 138
+FERFT+RA + ++ +Q EAK L + + T+H+LLGLI E G I+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEAKLLKHNYIGTEHILLGLIHEGEGIAAKALEGMDISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E VV I Q P +PF+ K+V E ++ + G+ +I EH
Sbjct: 61 EQVVDII----------GEGQQAP---TGHIPFTPRAKKVLELSLREALQLGHTYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+ + + + G +G+EP+ E + SG
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLGRVRQEVIKLISG---YQGKEPASTGAREEGTPSG- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LTA A E +DPVIGRE +++R++Q+L RRTKNNP+L+G
Sbjct: 164 -----------SLVLDQFGRNLTAAAREGKLDPVIGREEQMERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQAIVAGDVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIVLFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKN 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + AV+IL GLR++YE HH T A+ AAV+LS RYI+
Sbjct: 328 IEKDAALERRFQPIQVPEPTLDIAVQILRGLRDQYENHHKVTITDGALEAAVNLSDRYIN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV-- 554
DRYLPDKAIDL+DEAG++ I +S+P + D ++I + EV
Sbjct: 388 DRYLPDKAIDLIDEAGAKLRI-----------TRMSEPQEIKDLNEKIAEARKRKEVAID 436
Query: 555 -QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
Q L D+ M T E + A+V + +A V + +GIPV ++T
Sbjct: 437 KQNFELAADERNTEMELTKERDKAEKAWRSGAKGGGAIVDEELVAEVLAKATGIPVFKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++A+ ++SRA++R+R GLKDP RP+ + +F GPTGVGKT
Sbjct: 497 EEESSRLLRMEDELHKRIIGQNDAIKSVSRAIRRTRAGLKDPKRPSGSFIFAGPTGVGKT 556
Query: 674 ELAKSLAACYFGS 686
ELAK+LA FG
Sbjct: 557 ELAKALAEFLFGD 569
>gi|183601796|ref|ZP_02963166.1| probable ATP-dependent Clp protease ATP-binding subunit
[Bifidobacterium animalis subsp. lactis HN019]
gi|219683673|ref|YP_002470056.1| protease [Bifidobacterium animalis subsp. lactis AD011]
gi|241190706|ref|YP_002968100.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|241196112|ref|YP_002969667.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|384193703|ref|YP_005579449.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
animalis subsp. lactis BLC1]
gi|384195264|ref|YP_005581009.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
animalis subsp. lactis V9]
gi|386866851|ref|YP_006279845.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
animalis subsp. animalis ATCC 25527]
gi|387820575|ref|YP_006300618.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Bifidobacterium animalis subsp. lactis B420]
gi|387822251|ref|YP_006302200.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB
[Bifidobacterium animalis subsp. lactis Bi-07]
gi|423679232|ref|ZP_17654108.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
animalis subsp. lactis BS 01]
gi|61679297|gb|AAX52926.1| ClpC [Bifidobacterium animalis subsp. animalis ATCC 25527]
gi|183219402|gb|EDT90043.1| probable ATP-dependent Clp protease ATP-binding subunit
[Bifidobacterium animalis subsp. lactis HN019]
gi|219621323|gb|ACL29480.1| protease [Bifidobacterium animalis subsp. lactis AD011]
gi|240249098|gb|ACS46038.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|240250666|gb|ACS47605.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|295793695|gb|ADG33230.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
animalis subsp. lactis V9]
gi|345282562|gb|AEN76416.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
animalis subsp. lactis BLC1]
gi|366041343|gb|EHN17838.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
animalis subsp. lactis BS 01]
gi|385700934|gb|AFI62882.1| ATP-dependent Clp protease ATP-binding subunit [Bifidobacterium
animalis subsp. animalis ATCC 25527]
gi|386653276|gb|AFJ16406.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Bifidobacterium animalis subsp. lactis B420]
gi|386654859|gb|AFJ17988.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB
[Bifidobacterium animalis subsp. lactis Bi-07]
Length = 850
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/612 (41%), Positives = 372/612 (60%), Gaps = 46/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E D LE+ G+T++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGDGVAAKALEAKGVTLEDTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + AA G +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGT------AAPTGH-------IPFTPHAKQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAK-EGREPSLAKGVRENSISG 257
I LGL +G +VL ++ VD++ L + + ++G EG + +A S+
Sbjct: 108 ILLGLIREGEGVGTQVLIKMDVDLSDLRSTTIDMIRGNSGNGEGDKGDMANA---GSVQD 164
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K + ++ ++ L+QF +LTA A + +DPVIGR TEI+R++ +L RRTKNNP+L+
Sbjct: 165 KRS------QSGSAILDQFGRNLTAEAKDGKLDPVIGRSTEIERVMVVLSRRTKNNPVLI 218
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA +IV +VP L K++ SLD+G ++AG++ RG+ E R+ ++ E
Sbjct: 219 GEPGVGKTAVVEGLAQKIVAGDVPETLKDKQVYSLDLGSMVAGSRYRGDFEERLKKVLKE 278
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 279 IKTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRK 333
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ +SEPS + + IL GLR +YE HH+ T A+ +A LSARYI
Sbjct: 334 YIEKDAALERRFQPIQVSEPSIAETIEILKGLRARYENHHHVTITDGALQSAAELSARYI 393
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
DR LPDKAIDL+DEAG+R I KR L+ PP+ + R + E Q
Sbjct: 394 QDRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDNRIARIAKEKDQTI 442
Query: 558 RLKYDDVVASMGDTSE-IVVESSLPSAS----DDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + + A + D E + E S + D VV D IA V S +GIPV ++
Sbjct: 443 KDQQFEKAAELRDKQEKLEAERKEKEKSWREGESDVRMVVDEDVIAEVISQSTGIPVFKL 502
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ +E++L KR+IGQDEAV+A+SR+++R+RVGLKDP RP + +F GPTGVGK
Sbjct: 503 TQAESKKLMSMEKELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPAGSFIFAGPTGVGK 562
Query: 673 TELAKSLAACYF 684
TELAK+LA F
Sbjct: 563 TELAKALAQFLF 574
>gi|423421752|ref|ZP_17398841.1| chaperone ClpB [Bacillus cereus BAG3X2-1]
gi|401096871|gb|EJQ04908.1| chaperone ClpB [Bacillus cereus BAG3X2-1]
Length = 811
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 262/624 (41%), Positives = 366/624 (58%), Gaps = 79/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EH+
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHVL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++++IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRA--------------HIELFKRKKEQQTCILSKPPDDYWQEIRT 546
+LPDKAIDL+DEA S+ ++L + +KE+ + S QE
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQS-------QEFEK 439
Query: 547 VQAMHEVVQGSRLKYDDVVASM-----GDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
++ ++ Q R K +D + SE+ VE DIA V
Sbjct: 440 AASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVE------------------DIANVV 481
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
S W+ IPV ++ E L+ LE L R+IGQDEAV A+++AV+R+R GLKDP RP +
Sbjct: 482 STWTRIPVSKLAQTETDKLLNLESILHDRLIGQDEAVVAVAKAVRRARAGLKDPKRPIGS 541
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 542 FIFLGPTGVGKTELARALAESMFG 565
>gi|374610138|ref|ZP_09682931.1| ATPase AAA-2 domain protein [Mycobacterium tusciae JS617]
gi|373551169|gb|EHP77798.1| ATPase AAA-2 domain protein [Mycobacterium tusciae JS617]
Length = 851
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/613 (41%), Positives = 363/613 (59%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKE---------TAEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGEAGNP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T AI AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDPAIVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E+++ KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDEIHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|118619352|ref|YP_907684.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
ulcerans Agy99]
gi|118571462|gb|ABL06213.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
ulcerans Agy99]
Length = 849
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 359/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|168206835|ref|ZP_02632840.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens E str. JGS1987]
gi|169344128|ref|ZP_02865111.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens C str. JGS1495]
gi|169297739|gb|EDS79838.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens C str. JGS1495]
gi|170661766|gb|EDT14449.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens E str. JGS1987]
Length = 814
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/613 (41%), Positives = 367/613 (59%), Gaps = 52/613 (8%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKD-MVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ F E + K VI +E+ + K + T+HLL+GLI E+ + LE ++ +
Sbjct: 3 LDNFNENS-KIVINKGKESSLMLKHGYMGTEHLLIGLINENGQCSKILEESNVTEEKVLS 61
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ G+ S ++PF+ K++ + +VE ++ G++ PEHI
Sbjct: 62 FIKLY-----------VGIGEVNYSLDEVPFTPRCKKILDRSVEIAKEYGHSISRPEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRL-GVDVNHLAAVAVSRLQGELAKEGREPSL-AKGVRENSISGK 258
L L +G A +L ++ D+ +++ +L L GR PS +K ++E
Sbjct: 111 LALIKEKEGVANLILTKIVKNDIKNIS----DKLNNIL---GRIPSKESKSLKEK----- 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ P R L + ++L +A + +DPVIGR+ E QR+++ILCRR KNNP L+G
Sbjct: 159 ----EKPKRKDTPTLNLYGINLIEKADKNKLDPVIGRKDETQRLLEILCRRMKNNPCLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA RI+ EVP + KRI +LD+ ++AGAK RGE E R+ +++E+
Sbjct: 215 EPGVGKTAVVEGLAQRILLGEVPDIIKDKRIFTLDVTSMLAGAKYRGEFEERLKKVLNEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ S D+ILFIDE+H ++G+G G +G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 275 KDSDDIILFIDEMHNIVGAG----GAEG-AIDASNILKPALARGEIQCIGATTTDEYRKN 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EPS+ED+V IL GLREKYE HHN K T EAI AAV+LS+RYI+
Sbjct: 330 IEKDSALERRFQPVVVKEPSKEDSVLILKGLREKYEVHHNVKLTDEAIEAAVNLSSRYIT 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA ++ IE + I+ PP + QE E + +
Sbjct: 390 DRFLPDKAIDLIDEAAAKVRIE---------SMIV--PPRLFKQEELIANLKIEKEEAIK 438
Query: 559 LKYDDVVASMGDTSEIVVE-----SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
L+ ++ A + D ++ E L + ++ V + IA V S W+ IPV+++T
Sbjct: 439 LQDFELAAKLRDEESMLQEELERDKELWREENYNKIYEVNKEHIAKVVSKWTQIPVERLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE+L KRVIGQ EA+ IS+AV+RSRVGLKDP RP + F GPTGVGKT
Sbjct: 499 EKESSRLLKLEEKLSKRVIGQLEAIRTISKAVRRSRVGLKDPKRPIGSFAFLGPTGVGKT 558
Query: 674 ELAKSLAACYFGS 686
EL K+LA FG
Sbjct: 559 ELCKALAEAMFGD 571
>gi|229015484|ref|ZP_04172482.1| Negative regulator of genetic competence [Bacillus cereus AH1273]
gi|229021693|ref|ZP_04178275.1| Negative regulator of genetic competence [Bacillus cereus AH1272]
gi|423393465|ref|ZP_17370691.1| chaperone ClpB [Bacillus cereus BAG1X1-3]
gi|228739561|gb|EEL89975.1| Negative regulator of genetic competence [Bacillus cereus AH1272]
gi|228745771|gb|EEL95775.1| Negative regulator of genetic competence [Bacillus cereus AH1273]
gi|401629572|gb|EJS47385.1| chaperone ClpB [Bacillus cereus BAG1X1-3]
Length = 811
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 262/624 (41%), Positives = 366/624 (58%), Gaps = 79/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EH+
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHVL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++++IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRA--------------HIELFKRKKEQQTCILSKPPDDYWQEIRT 546
+LPDKAIDL+DEA S+ ++L + +KE+ + S QE
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQS-------QEFEK 439
Query: 547 VQAMHEVVQGSRLKYDDVVASM-----GDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
++ ++ Q R K +D + SE+ VE DIA V
Sbjct: 440 AASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVE------------------DIANVV 481
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
S W+ IPV ++ E L+ LE L R+IGQDEAV A+++AV+R+R GLKDP RP +
Sbjct: 482 STWTRIPVSKLAQTETDKLLNLESILHDRLIGQDEAVVAVAKAVRRARAGLKDPKRPIGS 541
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 542 FIFLGPTGVGKTELARALAESMFG 565
>gi|183985068|ref|YP_001853359.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
marinum M]
gi|183178394|gb|ACC43504.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
marinum M]
Length = 848
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 359/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|75760630|ref|ZP_00740659.1| Negative regulator of genetic competence clpC/mecB [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|228898835|ref|ZP_04063117.1| Negative regulator of genetic competence [Bacillus thuringiensis
IBL 4222]
gi|434378724|ref|YP_006613368.1| negative regulator of genetic competence ClpC/MecB [Bacillus
thuringiensis HD-789]
gi|74491873|gb|EAO55060.1| Negative regulator of genetic competence clpC/mecB [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|228860735|gb|EEN05113.1| Negative regulator of genetic competence [Bacillus thuringiensis
IBL 4222]
gi|401877281|gb|AFQ29448.1| negative regulator of genetic competence ClpC/MecB [Bacillus
thuringiensis HD-789]
Length = 811
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSAT 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++++IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L R+IGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRLIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|260888455|ref|ZP_05899718.1| negative regulator of genetic competence ClpC/MecB [Selenomonas
sputigena ATCC 35185]
gi|330838231|ref|YP_004412811.1| ATPase AAA-2 domain protein [Selenomonas sputigena ATCC 35185]
gi|260861991|gb|EEX76491.1| negative regulator of genetic competence ClpC/MecB [Selenomonas
sputigena ATCC 35185]
gi|329745995|gb|AEB99351.1| ATPase AAA-2 domain protein [Selenomonas sputigena ATCC 35185]
Length = 838
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 270/623 (43%), Positives = 361/623 (57%), Gaps = 71/623 (11%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVS 143
RFT RA+K + F+Q EA+ L ++ + T+H+LLGL+ E GI R +
Sbjct: 4 RFTGRALKVLEFAQYEAQELEQNFIGTEHILLGLLHEG--------EGIAARALRSLGLD 55
Query: 144 IWH-STNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
H T +D G+ ++ KRV E AVE +RS G+N+I EHI LG
Sbjct: 56 FGHVRTRVEDM----LGGREMEERRASYYTDRAKRVMELAVEEARSFGHNYIGTEHILLG 111
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
L ++G A VL LG D++ + A + L G + ++A L
Sbjct: 112 LIRENEGVAAHVLISLGADLDIVRATVIDMLGG--------------------THESAEL 151
Query: 263 KSPGRTRASA------------LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT 310
+P R R +A L+++ D+ A E +DPVIGRE EI+RI+QIL RRT
Sbjct: 152 PAPDRRRRAAPAQGEAAAGTPLLDKYGRDINRMAREGKLDPVIGREKEIERIVQILSRRT 211
Query: 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370
KNNPIL+GE GVGKTA+AEGLA RI VP L KRI+SL M L+AGAK RGE E R
Sbjct: 212 KNNPILIGEPGVGKTAVAEGLAARIATGAVPRLLQQKRIVSLPMAGLVAGAKYRGEFEER 271
Query: 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430
+ +I E+ KSG+VILFIDE+HTLIG+G +G+ LD +N+LKP L RGE+Q I +T
Sbjct: 272 LKGIIDEVMKSGNVILFIDEMHTLIGAGAA----EGS-LDAANILKPPLSRGEVQIIGAT 326
Query: 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490
T E++ FEKD AL RRFQ +L+ EP+ E+A +IL GLR KYEA H+ K EA+ AAV
Sbjct: 327 TLKEYKKYFEKDSALERRFQSILVEEPTTEEAEKILHGLRPKYEAFHHAKIRDEALKAAV 386
Query: 491 HLSARYISDRYLPDKAIDLVDEAGSRAHIEL------FKRKKEQ-QTCILSKPPDDYWQE 543
LS RYI DR LPDKAIDL+DEA S++ ++ KR +E+ + + K Q+
Sbjct: 387 RLSHRYIPDRCLPDKAIDLMDEAASKSRMKTVVLPTSIKRLEERLKKLGIEKDTAIKLQD 446
Query: 544 IRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
A+ + + S LK D V A E E + + V DDIA L
Sbjct: 447 YERAAALRD--EESALKEDLVAA-----KERWQEREMKEVT-------VTADDIADAVGL 492
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIPV+ I A E L+ LE+ L V+GQ+EAV A+++AV+R+R GLKDP RP + L
Sbjct: 493 WTGIPVKDIAAKESERLLHLEQILTAHVVGQEEAVTAVAKAVRRARAGLKDPKRPIGSFL 552
Query: 664 FCGPTGVGKTELAKSLAACYFGS 686
F G TGVGKTELA++LA FG+
Sbjct: 553 FLGSTGVGKTELARALAESLFGT 575
>gi|84497246|ref|ZP_00996068.1| putative ATP-dependent Clp protease [Janibacter sp. HTCC2649]
gi|84382134|gb|EAP98016.1| putative ATP-dependent Clp protease [Janibacter sp. HTCC2649]
Length = 848
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/617 (41%), Positives = 372/617 (60%), Gaps = 54/617 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E + LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARLLNHNYIGTEHILLGLIHEGEGVASKALESLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I QG+ + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQEII------------GQGQQ-APTGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+ + + + G + G+E + A + G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLGRVRQQVIQLISG--YQGGKEGAAAGVGQGGPAEGT 165
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A + L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 166 PAG--------SLVLDQFGRNLTVAAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 217
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 218 EPGVGKTAVVEGLAQDIVRGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 277
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HTL+G+G +D +++LKP L RGELQ + +TT DE+R
Sbjct: 278 RTRGDIVLFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQVVGATTLDEYRKH 332
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EP+ + IL GLR++YEAHH T A+ AA +++ RYI+
Sbjct: 333 IEKDAALERRFQPIQVAEPTLAHTIEILKGLRDRYEAHHRVSITDSALVAAANMADRYIN 392
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV-- 554
DR+LPDKAIDL+DEAG+R I ++ PPD ++ ++I+ V E
Sbjct: 393 DRFLPDKAIDLIDEAGARLRIRR-----------MTAPPDLREFDEKIQAVVREKESAID 441
Query: 555 -----QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ +RL+ DD + S+ E + D D A V + IA V + +GIPV
Sbjct: 442 GQDFEKAARLR-DDEKNLRNEKSQRETEW---KSGDLDVVAEVDEELIAEVLAASTGIPV 497
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRV+G D+A+ A+S+A++R+R GLKDP RP + +F GPTG
Sbjct: 498 FKLTEEESSRLLHMEDELHKRVVGMDDAIKALSQAIRRTRAGLKDPRRPGGSFIFAGPTG 557
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELAK+LAA FG
Sbjct: 558 VGKTELAKTLAAFLFGD 574
>gi|224475673|ref|YP_002633279.1| ClpC ATPase family protein [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222420280|emb|CAL27094.1| ClpC ATPase family protein [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 821
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 266/617 (43%), Positives = 368/617 (59%), Gaps = 64/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES GIT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFGITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
VV+ + + QG+ + ++ K+V E +++ +R +NF+
Sbjct: 59 ----LVVA--------EVEKLIGQGQ--EQVGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L D+N +++ + ++ K P ++ N
Sbjct: 105 TEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMS-----NKN 151
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ T + +P L+ DLT A + +DPV+GR+TEI R+I++L RRTKNNP+
Sbjct: 152 AQATKSNNTP------TLDGLARDLTVIAKDGTLDPVVGRDTEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI + GDVILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQ I +TT DE+
Sbjct: 266 EEIHQVGDVILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQAIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ED V IL GLR++YEAHH + EAI AA LS R
Sbjct: 321 RKHIEKDAALERRFQPVQVDEPTVEDTVSILKGLRDRYEAHHRINISDEAIEAAARLSDR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
Y+SDR+LPDKAIDL+DEA S+ R K T K + QEI V+ +
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKV------RLKSHTTPTNLK---EIEQEIEKVKNEKDAAV 431
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIPV 609
S+ ++++ A++ D + +E A ++ + A G +DIA V + W+GIP+
Sbjct: 432 HSQ-EFEN-AANLRD-KQTKLEKQYEDAKNEWKNAQGGSNTTLSENDIAEVIAGWTGIPL 488
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++ E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPTG
Sbjct: 489 TRLNETESERLLNLEDTLHERVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTG 548
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELA++LA FG
Sbjct: 549 VGKTELARALAESMFGD 565
>gi|110800045|ref|YP_697129.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens ATCC 13124]
gi|168211237|ref|ZP_02636862.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens B str. ATCC 3626]
gi|110674692|gb|ABG83679.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens ATCC 13124]
gi|170710763|gb|EDT22945.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens B str. ATCC 3626]
Length = 814
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/613 (41%), Positives = 367/613 (59%), Gaps = 52/613 (8%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKD-MVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ F E + K VI +E+ + K + T+HLL+GLI E+ + LE ++ +
Sbjct: 3 LDNFNENS-KIVINKGKESSLMLKHGYMGTEHLLIGLINENGQCSKILEESNVTEEKVLS 61
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ G+ S ++PF+ K++ + +VE ++ G++ PEHI
Sbjct: 62 FIKLY-----------VGIGEVNYSLDEVPFTPRCKKILDRSVEIAKEYGHSISRPEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRL-GVDVNHLAAVAVSRLQGELAKEGREPSL-AKGVRENSISGK 258
L L +G A +L ++ D+ +++ +L L GR PS +K ++E
Sbjct: 111 LALIKEREGVANLILTKIVKNDIKNIS----DKLNNIL---GRIPSKESKSLKEK----- 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ P R L + ++L +A + +DPVIGR+ E QR+++ILCRR KNNP L+G
Sbjct: 159 ----EKPKRKDTPTLNLYGINLIEKADKNKLDPVIGRKDETQRLLEILCRRMKNNPCLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA RI+ EVP + KRI +LD+ ++AGAK RGE E R+ +++E+
Sbjct: 215 EPGVGKTAVVEGLAQRILLGEVPDIIKDKRIFTLDVTSMLAGAKYRGEFEERLKKVLNEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ S D+ILFIDE+H ++G+G G +G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 275 KDSDDIILFIDEMHNIVGAG----GAEG-AIDASNILKPALARGEIQCIGATTTDEYRKN 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EPS+ED+V IL GLREKYE HHN K T EAI AAV+LS+RYI+
Sbjct: 330 IEKDSALERRFQPVVVKEPSKEDSVLILKGLREKYEVHHNVKLTDEAIEAAVNLSSRYIT 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA ++ IE + I+ PP + QE E + +
Sbjct: 390 DRFLPDKAIDLIDEAAAKVRIE---------SMIV--PPRLFKQEELIANLKIEKEEAIK 438
Query: 559 LKYDDVVASMGDTSEIVVE-----SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
L+ ++ A + D ++ E L + ++ V + IA V S W+ IPV+++T
Sbjct: 439 LQDFELAAKLRDEESMLQEELERDKELWREENYNKIYEVNKEHIAKVVSKWTQIPVERLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE+L KRVIGQ EA+ IS+AV+RSRVGLKDP RP + F GPTGVGKT
Sbjct: 499 EKESSKLLKLEEKLSKRVIGQLEAIRTISKAVRRSRVGLKDPKRPIGSFAFLGPTGVGKT 558
Query: 674 ELAKSLAACYFGS 686
EL K+LA FG
Sbjct: 559 ELCKALAEAMFGD 571
>gi|443493153|ref|YP_007371300.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
liflandii 128FXT]
gi|442585650|gb|AGC64793.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
liflandii 128FXT]
Length = 848
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 359/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARIRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|384507453|ref|YP_005684122.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis C231]
gi|384511635|ref|YP_005691213.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis PAT10]
gi|387137283|ref|YP_005693263.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 42/02-A]
gi|302206878|gb|ADL11220.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis C231]
gi|341825574|gb|AEK93095.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis PAT10]
gi|348607728|gb|AEP71001.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 42/02-A]
Length = 885
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/617 (41%), Positives = 365/617 (59%), Gaps = 41/617 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPVGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
+ LGL +G A +VL +LG D+ + + L G E E + + G + +G
Sbjct: 107 FLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSGYAGGESPENNESGGEAVGAGTG 166
Query: 258 KTAALKSPG---RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
A + G R+ + L+QF +LT A + +DPV+GRE EI+RI+Q+L RRTKNNP
Sbjct: 167 AARAGRGSGAGDRSNSLVLDQFGRNLTQAAKDGKLDPVVGREKEIERIMQVLSRRTKNNP 226
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ +
Sbjct: 227 VLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKV 286
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE
Sbjct: 287 LKEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDE 341
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA LS
Sbjct: 342 YRKHIEKDAALERRFQPVNVPEPSVEMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSD 401
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI+DR+LPDKA+DL+DEAG+R I+ + + DD E+R +
Sbjct: 402 RYINDRFLPDKAVDLIDEAGARMRIQRMTAPESIRKV------DDRIAEVRREKEAAIDA 455
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPV 609
Q + A + DT + E + D +E A VG + IA V W+GIPV
Sbjct: 456 QDF-----EKAAGLRDTERKLNEERAEKEKQWRSGDLEEIAEVGEEQIAEVLGNWTGIPV 510
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV A+SRA++R+R GLKDP RP+ + +F GP+G
Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIRRTRAGLKDPRRPSGSFIFAGPSG 570
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 571 VGKTELSKALANFLFGD 587
>gi|383826095|ref|ZP_09981237.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
xenopi RIVM700367]
gi|383333857|gb|EID12305.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
xenopi RIVM700367]
Length = 850
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/613 (40%), Positives = 361/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKETAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQKIVHGDVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAAALRDREKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALAEFLFGD 573
>gi|397654739|ref|YP_006495422.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
ulcerans 0102]
gi|393403695|dbj|BAM28187.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
ulcerans 0102]
Length = 885
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/617 (41%), Positives = 367/617 (59%), Gaps = 41/617 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPVGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
+ LGL +G A +VL +LG D+ + + L G E E + + G + +G
Sbjct: 107 FLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGESPENNESGGEAVGAGTG 166
Query: 258 KTAALKSPG---RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
A + G R+ + L+QF +LT A + +DPV+GRE EI+RI+Q+L RRTKNNP
Sbjct: 167 AARAGRGSGAGDRSNSLVLDQFGRNLTQAAKDGKLDPVVGREKEIERIMQVLSRRTKNNP 226
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ +
Sbjct: 227 VLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKV 286
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI + GD+ILFIDE+HTL+G+G +G +D ++LLKP L RGELQ I +TT DE
Sbjct: 287 LKEINQRGDIILFIDEIHTLVGAGAA----EGA-IDAASLLKPKLARGELQTIGATTLDE 341
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA LS
Sbjct: 342 YRKHIEKDAALERRFQPVNVPEPSVEMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSD 401
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI+DR+LPDKA+DL+DEAG+R I+ + + DD E+R +
Sbjct: 402 RYINDRFLPDKAVDLIDEAGARMRIQRMTAPESIRKV------DDRIAEVRREKEAAIDA 455
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPV 609
Q + A + DT + E + D +E A VG + IA V W+GIPV
Sbjct: 456 QDF-----EKAAGLRDTERKLNEERAEKEKQWRSGDLEEIAEVGEEQIAEVLGNWTGIPV 510
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV A+SRA++R+R GLKDP RP+ + +F GP+G
Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIRRTRAGLKDPRRPSGSFIFAGPSG 570
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 571 VGKTELSKALANFLFGD 587
>gi|433650481|ref|YP_007295483.1| ATPase with chaperone activity, ATP-binding subunit [Mycobacterium
smegmatis JS623]
gi|433300258|gb|AGB26078.1| ATPase with chaperone activity, ATP-binding subunit [Mycobacterium
smegmatis JS623]
Length = 849
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/615 (41%), Positives = 366/615 (59%), Gaps = 51/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKE---------TAEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGEAGNP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R I ++ PPD D+ ++I +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLRDFDEKI--AEARREKESA 438
Query: 557 SRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + AS+ D + +V + D D A V + IA V W+GIPV +
Sbjct: 439 IDAQDFEKAASLRDKEKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFK 498
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVG
Sbjct: 499 LTEAETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVG 558
Query: 672 KTELAKSLAACYFGS 686
KTEL+K+LA FG
Sbjct: 559 KTELSKALAEFLFGD 573
>gi|386741076|ref|YP_006214256.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 31]
gi|384477770|gb|AFH91566.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 31]
Length = 885
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/617 (41%), Positives = 365/617 (59%), Gaps = 41/617 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPVGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
+ LGL +G A +VL +LG D+ + + L G E E + + G + +G
Sbjct: 107 FLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGESPENNESGGEAVGAGTG 166
Query: 258 KTAALKSPG---RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
A + G R+ + L+QF +LT A + +DPV+GRE EI+RI+Q+L RRTKNNP
Sbjct: 167 AARAGRGSGAGDRSNSLVLDQFGRNLTQAAKDGKLDPVVGREKEIERIMQVLSRRTKNNP 226
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ +
Sbjct: 227 VLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKV 286
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE
Sbjct: 287 LKEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDE 341
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA LS
Sbjct: 342 YRKHIEKDAALERRFQPVNVPEPSVEMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSD 401
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI+DR+LPDKA+DL+DEAG+R I+ + + DD E+R +
Sbjct: 402 RYINDRFLPDKAVDLIDEAGARMRIQRMTAPESIRKV------DDRIAEVRREKEAAIDA 455
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPV 609
Q + A + DT + E + D +E A VG + IA V W+GIPV
Sbjct: 456 QDF-----EKAAGLRDTERKLNEERAEKEKQWRSGDLEEIAEVGEEQIAEVLGNWTGIPV 510
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV A+SRA++R+R GLKDP RP+ + +F GP+G
Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIRRTRAGLKDPRRPSGSFIFAGPSG 570
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 571 VGKTELSKALANFLFGD 587
>gi|310657474|ref|YP_003935195.1| protein disaggregation chaperone [[Clostridium] sticklandii]
gi|308824252|emb|CBH20290.1| protein disaggregation chaperone [[Clostridium] sticklandii]
Length = 821
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/608 (41%), Positives = 363/608 (59%), Gaps = 43/608 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+ E FTERA +A+ ++REA LG ++ ++H+LLGL+AE + + G+T++
Sbjct: 1 MMENFTERAKQAIELAKREASKLGHNIAGSEHILLGLMAEGQGIAYQVLYKFGLTLESLV 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
++ + +G + FS TK +FE ++ ++ G+++I EH
Sbjct: 61 REIIDL--------------EGIGLPNTHFQGFSPRTKGIFELSIMEAKMLGHSYIGTEH 106
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ L L + R+L G+D N + ++ L G A G+EP+ A G
Sbjct: 107 LLLALLKEKECIGCRLLMEKGIDYNLVFKEIMNLLGGSSA--GKEPNQA---------GN 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T+++ S L Q+ VDLT A E +DPVIGR EI+RIIQIL RRTKNNP+L+G
Sbjct: 156 TSSMNSQN-PNTPTLNQYGVDLTKEADENRLDPVIGRSKEIERIIQILSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTAI EGLA +I ++P L +KRIM+L+MG L+AGAK RGE E RV ++ E+
Sbjct: 215 DPGVGKTAIIEGLAQKINSGDIPSTLKNKRIMTLEMGNLLAGAKYRGEFEERVKKIVEEL 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ + DVI+FIDE+H L G+G +D SN++KP+L RGE+Q + +TT DE+R
Sbjct: 275 KANKDVIIFIDEIHNLAGAGGA-----EGAIDASNIMKPALARGEIQVMGATTIDEYRKH 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQ V++ EP+ ED+++IL GLR++YEAHH K T EAI AAV LS RYI+
Sbjct: 330 IEKDSALERRFQTVMVDEPNTEDSIKILHGLRDRYEAHHKVKITDEAIKAAVDLSHRYIT 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA SR + L K + L E A + + ++
Sbjct: 390 DRFLPDKAIDLIDEAASR--VRLRKYMEPDNIKELEDKLSKLSMEKEEAIATQDFEKAAK 447
Query: 559 LKYDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
++ ++ + +G+ E + + S VV DIA + S W+G+PV ++ +E
Sbjct: 448 IRDEEKQIKEQLGENKEQWTKKNYTSTE------VVLEKDIAEIVSSWTGVPVTRLQMEE 501
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ LE L KRVIGQ+EAV AISRA++R+R G+KDP RP + +F GPTGVGKTEL+
Sbjct: 502 STKLLDLENILHKRVIGQEEAVEAISRAIRRARTGMKDPKRPIGSFIFLGPTGVGKTELS 561
Query: 677 KSLAACYF 684
K+LA F
Sbjct: 562 KALAEAMF 569
>gi|27467205|ref|NP_763842.1| endopeptidase [Staphylococcus epidermidis ATCC 12228]
gi|57866102|ref|YP_187761.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus epidermidis RP62A]
gi|242241856|ref|ZP_04796301.1| ClpB ATPase [Staphylococcus epidermidis W23144]
gi|293367900|ref|ZP_06614538.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417658249|ref|ZP_12307885.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU045]
gi|417910375|ref|ZP_12554097.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU037]
gi|418604270|ref|ZP_13167628.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU041]
gi|418606457|ref|ZP_13169734.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU057]
gi|418609533|ref|ZP_13172675.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU065]
gi|418611880|ref|ZP_13174943.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU117]
gi|418626332|ref|ZP_13188945.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU126]
gi|420166780|ref|ZP_14673460.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM088]
gi|420175670|ref|ZP_14682104.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM061]
gi|420193494|ref|ZP_14699346.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM023]
gi|420196769|ref|ZP_14702508.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM020]
gi|420218753|ref|ZP_14723807.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH04008]
gi|420222653|ref|ZP_14727570.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH08001]
gi|420225510|ref|ZP_14730340.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH06004]
gi|420226413|ref|ZP_14731197.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH05003]
gi|420228732|ref|ZP_14733449.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH04003]
gi|420231100|ref|ZP_14735755.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH051668]
gi|81675398|sp|Q5HRM8.1|CLPC_STAEQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|81843102|sp|Q8CQ88.1|CLPC_STAES RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|27314747|gb|AAO03884.1|AE016744_287 endopeptidase [Staphylococcus epidermidis ATCC 12228]
gi|57636760|gb|AAW53548.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus epidermidis RP62A]
gi|242234634|gb|EES36946.1| ClpB ATPase [Staphylococcus epidermidis W23144]
gi|291317929|gb|EFE58337.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329738043|gb|EGG74264.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU045]
gi|341650550|gb|EGS74370.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU037]
gi|374405287|gb|EHQ76229.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU041]
gi|374406860|gb|EHQ77735.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU065]
gi|374407864|gb|EHQ78709.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU057]
gi|374821395|gb|EHR85458.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU117]
gi|374832889|gb|EHR96592.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU126]
gi|394232700|gb|EJD78313.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM088]
gi|394242848|gb|EJD88226.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM061]
gi|394259936|gb|EJE04764.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM023]
gi|394267271|gb|EJE11872.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM020]
gi|394288915|gb|EJE32813.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH08001]
gi|394291827|gb|EJE35612.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH04008]
gi|394293577|gb|EJE37291.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH06004]
gi|394298789|gb|EJE42351.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH05003]
gi|394300195|gb|EJE43711.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH04003]
gi|394303175|gb|EJE46603.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH051668]
Length = 817
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/624 (40%), Positives = 351/624 (56%), Gaps = 80/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-----FLESGITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G + IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLVSFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQEQMGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V K + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPEM 147
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 148 SNKNAQANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV+ EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS R
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSDR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYW 541
Y+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAV-------HA 433
Query: 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
QE + + +Y+D + + L +A + ++IA V
Sbjct: 434 QEFENAANLRDKQSKLEKQYEDAKNEWKN-----AQGGLDTA--------LSEENIAEVI 480
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
+ W+GIP+ +I E L+ LE+ L KRVIGQ++AV +IS+AV+R+R GLKDP RP +
Sbjct: 481 AGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGS 540
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 541 FIFLGPTGVGKTELARALAESMFG 564
>gi|288574596|ref|ZP_06392953.1| ATPase AAA-2 domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570337|gb|EFC91894.1| ATPase AAA-2 domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 824
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 241/606 (39%), Positives = 369/606 (60%), Gaps = 37/606 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+++ FTER+ K + + REA LG DM+ T+H+L+GL E+ + S + + + E
Sbjct: 1 MWQFFTERSKKVIQLAHREALRLGHDMIGTEHILMGLALENGGVAAQILSSLGL-PSDEL 59
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+V++ S + G+P +P S KRV + ++ +R+ G N++ EHI
Sbjct: 60 LVAVEASV---------SLGEPIKKPMDLPLSPRAKRVLDLSIREARNMGVNYVGTEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGLF+ +G A +VL+ +G++ + L G EG S K R++
Sbjct: 111 LGLFSEGEGMAVQVLRNMGLEPAEGKKQVLRFLSG---GEGDGKSSNKQERKD------- 160
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
R R L+Q +DLT A + +DPVIGR EI+R+IQ+L RRTKNNP+L+G+
Sbjct: 161 ------RNRTPILDQLGIDLTEMAEKNELDPVIGRSKEIRRVIQVLSRRTKNNPVLIGDP 214
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAI EGLA +++ ++P L KR+ L+MG L+AG K RGE E R+ L+ E+++
Sbjct: 215 GVGKTAIVEGLAQKVLSGDIPESLKEKRVFQLNMGNLVAGTKYRGEFEERMRKLVVELKE 274
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
DVILFIDE+HT++G+G G +G +D +N+LKPSL RGE Q + +TT +E+R E
Sbjct: 275 CRDVILFIDEIHTIVGAG----GAEGA-IDAANILKPSLARGEFQVVGATTLEEYRRHIE 329
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EP+ EDA I+ GLR++YE+HH T +A++AAV LS+RYI+DR
Sbjct: 330 KDAALERRFQPVKVYEPNLEDAFLIVKGLRDRYESHHRVTITDQALDAAVKLSSRYITDR 389
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDK IDL+DEA +RA ++ + + + + K + +E + + ++L+
Sbjct: 390 FLPDKGIDLIDEAAARARLDTMELPESLKK--MDKELERIRKEKESAVNSQAFEKAAKLR 447
Query: 561 YDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLL 620
D+ + D E + + E V+ + +A V S W+G+PV Q+T +E L
Sbjct: 448 DDE--NRLSDDLERRRREWVSRQT--KEVPVLTDESVAQVVSEWTGVPVSQLTEEESKRL 503
Query: 621 VGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
+E+++ +R++GQ+ AV+A+S+A++R+R GLKDP RP + LF GPTGVGKTE+A+SLA
Sbjct: 504 SRMEDEIHRRLVGQESAVSAVSKAIRRARSGLKDPKRPIGSFLFLGPTGVGKTEMARSLA 563
Query: 681 ACYFGS 686
FGS
Sbjct: 564 DFLFGS 569
>gi|50955646|ref|YP_062934.1| ATP-dependent Clp protease, ATP-binding subunit [Leifsonia xyli
subsp. xyli str. CTCB07]
gi|50952128|gb|AAT89829.1| ATP-dependent Clp protease, ATP-binding subunit [Leifsonia xyli
subsp. xyli str. CTCB07]
Length = 839
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 257/615 (41%), Positives = 363/615 (59%), Gaps = 58/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEAKMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I Q T +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQDIIGQGQQQPT-------------GHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE + + G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKE-----------QVQVGGN 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A G + L+QF +LT A + +DPVIGRE EI+R++QIL RR+KNNP+L+G
Sbjct: 157 DQATAQAG---SQILDQFGRNLTQAARDNKLDPVIGREKEIERVMQILSRRSKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP L K++ +LD+G L+AG++ RG+ E R+ + EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVRGDVPETLKDKQLYTLDLGSLIAGSRYRGDFEERLKKVTKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+I FIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIITFIDEIHTLVGAGAA-----EGAIDAASILKPLLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
FEKD AL RRFQP+ ++EPS + IL GLR++YEAHH T AI +A +L+ RYI
Sbjct: 329 FEKDAALERRFQPIQVNEPSLPHTINILKGLRDRYEAHHKVSITDGAIVSAANLADRYIQ 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R + ILS PP+ + +I V++ E
Sbjct: 389 DRFLPDKAIDLIDEAGARLRL-----------SILSAPPELRKFDDKIAVVRSQKEAA-- 435
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
++ D AS+ D + ++ L + D A V IA V + +GIPV
Sbjct: 436 --IEDQDFEKAASLRDEEKNLLGERLRLEKQWRSGDVKTTAEVDEGLIAEVLAQATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E LV +E+ L +RVIGQ+EA+AA+S+ ++R+R GLKDP RP+ + +F GPTG
Sbjct: 494 FKLTEEESARLVFMEKALHQRVIGQEEAIAALSKTIRRTRAGLKDPKRPSGSFIFAGPTG 553
Query: 670 VGKTELAKSLAACYF 684
VGKTELAK+LA F
Sbjct: 554 VGKTELAKALAEFLF 568
>gi|420213021|ref|ZP_14718362.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM001]
gi|394277269|gb|EJE21595.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM001]
Length = 817
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/621 (40%), Positives = 351/621 (56%), Gaps = 74/621 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAR 138
+F R TERA + + +Q EA L + T+HLLLGL+ E LES IT DK
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKESEGIAAKVLESFNITEDKVI 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V + G + ++ K+V E +++ +R +NF+ EH
Sbjct: 62 EEVEKLI--------------GHGQEQMGTLHYTPRAKKVIELSMDEARKLHHNFVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL ++G A RV L +++ A V K + +S K
Sbjct: 108 ILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPEMSNK 150
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP+L+G
Sbjct: 151 NAQANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA IV+ EVP L KR+MSLDMG ++AG K RGE E R+ ++ EI
Sbjct: 209 EPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEI 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 269 HQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKN 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS RY+S
Sbjct: 324 IEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSDRYVS 383
Query: 499 DRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYWQEI 544
DR+LPDKAIDL+DEA S+ + E+ K K E+ + + QE
Sbjct: 384 DRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAV-------HAQEF 436
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW 604
+ + +Y+D + + L +A + ++IA V + W
Sbjct: 437 ENAANLRDKQSKLEKQYEDAKNEWKN-----AQGGLDTA--------LSEENIAEVIAGW 483
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+GIP+ +I E L+ LE+ L KRVIGQ++AV +IS+AV+R+R GLKDP RP + +F
Sbjct: 484 TGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIF 543
Query: 665 CGPTGVGKTELAKSLAACYFG 685
GPTGVGKTELA++LA FG
Sbjct: 544 LGPTGVGKTELARALAESMFG 564
>gi|229074143|ref|ZP_04207189.1| Negative regulator of genetic competence [Bacillus cereus Rock4-18]
gi|229094804|ref|ZP_04225809.1| Negative regulator of genetic competence [Bacillus cereus Rock3-29]
gi|229100880|ref|ZP_04231685.1| Negative regulator of genetic competence [Bacillus cereus Rock3-28]
gi|229113758|ref|ZP_04243193.1| Negative regulator of genetic competence [Bacillus cereus Rock1-3]
gi|407708030|ref|YP_006831615.1| ATP/GTP hydrolase [Bacillus thuringiensis MC28]
gi|423381871|ref|ZP_17359154.1| chaperone ClpB [Bacillus cereus BAG1O-2]
gi|423439740|ref|ZP_17416646.1| chaperone ClpB [Bacillus cereus BAG4X2-1]
gi|423450103|ref|ZP_17426981.1| chaperone ClpB [Bacillus cereus BAG5O-1]
gi|423467997|ref|ZP_17444765.1| chaperone ClpB [Bacillus cereus BAG6O-1]
gi|423537397|ref|ZP_17513815.1| chaperone ClpB [Bacillus cereus HuB2-9]
gi|423543125|ref|ZP_17519513.1| chaperone ClpB [Bacillus cereus HuB4-10]
gi|423543569|ref|ZP_17519927.1| chaperone ClpB [Bacillus cereus HuB5-5]
gi|423620310|ref|ZP_17596141.1| chaperone ClpB [Bacillus cereus VD115]
gi|423626976|ref|ZP_17602751.1| chaperone ClpB [Bacillus cereus VD148]
gi|228669629|gb|EEL25036.1| Negative regulator of genetic competence [Bacillus cereus Rock1-3]
gi|228682534|gb|EEL36606.1| Negative regulator of genetic competence [Bacillus cereus Rock3-28]
gi|228688547|gb|EEL42420.1| Negative regulator of genetic competence [Bacillus cereus Rock3-29]
gi|228708913|gb|EEL61040.1| Negative regulator of genetic competence [Bacillus cereus Rock4-18]
gi|401126726|gb|EJQ34460.1| chaperone ClpB [Bacillus cereus BAG5O-1]
gi|401166825|gb|EJQ74125.1| chaperone ClpB [Bacillus cereus HuB4-10]
gi|401187734|gb|EJQ94806.1| chaperone ClpB [Bacillus cereus HuB5-5]
gi|401248870|gb|EJR55191.1| chaperone ClpB [Bacillus cereus VD115]
gi|401250171|gb|EJR56475.1| chaperone ClpB [Bacillus cereus VD148]
gi|401628497|gb|EJS46338.1| chaperone ClpB [Bacillus cereus BAG1O-2]
gi|402411864|gb|EJV44227.1| chaperone ClpB [Bacillus cereus BAG6O-1]
gi|402421921|gb|EJV54165.1| chaperone ClpB [Bacillus cereus BAG4X2-1]
gi|402459103|gb|EJV90841.1| chaperone ClpB [Bacillus cereus HuB2-9]
gi|407385715|gb|AFU16216.1| Negative regulator of genetic competence [Bacillus thuringiensis
MC28]
Length = 811
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 263/624 (42%), Positives = 365/624 (58%), Gaps = 79/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSAT 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++++IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRA--------------HIELFKRKKEQQTCILSKPPDDYWQEIRT 546
+LPDKAIDL+DEA S+ ++L + +KE+ + S QE
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQS-------QEFEK 439
Query: 547 VQAMHEVVQGSRLKYDDVVASM-----GDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
++ ++ Q R K +D + SE+ VE DIA V
Sbjct: 440 AASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVE------------------DIANVV 481
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
S W+ IPV ++ E L+ LE L R+IGQDEAV A+++AV+R+R GLKDP RP +
Sbjct: 482 STWTRIPVSKLAQTETDKLLNLESILHDRLIGQDEAVVAVAKAVRRARAGLKDPKRPIGS 541
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 542 FIFLGPTGVGKTELARALAESMFG 565
>gi|228912821|ref|ZP_04076468.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228846757|gb|EEM91762.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 811
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS +++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLDESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|392423650|ref|YP_006464644.1| ATPase with chaperone activity, ATP-binding subunit
[Desulfosporosinus acidiphilus SJ4]
gi|391353613|gb|AFM39312.1| ATPase with chaperone activity, ATP-binding subunit
[Desulfosporosinus acidiphilus SJ4]
Length = 813
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 266/612 (43%), Positives = 364/612 (59%), Gaps = 54/612 (8%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID--KAREAV 141
R+TERA K + ++ EAK +G +V T+H+LLGLI E G+ +D K R V
Sbjct: 4 RYTERAEKVLTIAENEAKRMGHKVVGTEHILLGLIEEGEGIAAQALKGLGLDPVKVRTMV 63
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
++ G+P + ++ + KRV E A E + + N+I EHI L
Sbjct: 64 ------------EEVTGVGQPNTGTVEL--TPRVKRVLELANEEAHRQDVNYIGTEHILL 109
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL +G A R+L L V+ + V L GEL + PS + V +N T +
Sbjct: 110 GLIMEGEGIAARILANLNVNPERVWKQVVKLLGGELEESPVPPSNSGPVSKNGGPANTPS 169
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
L GR DLT +A E +DPVIGRE EI+R+IQ+L RRTKNNP L+GE G
Sbjct: 170 LNEFGR-----------DLTQQAREGRLDPVIGREKEIERVIQVLSRRTKNNPALIGEPG 218
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA I+ VP L++KR+++LD+ ++AG+K RGE E R+ ++ EI+
Sbjct: 219 VGKTAIAEGLAQGIINNRVPEILINKRVITLDLSAMVAGSKYRGEFEERLKKVMDEIRAD 278
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G++ILFIDE+HTLIG+G +D +N+LKP+L RGELQCI +TT +E+R EK
Sbjct: 279 GNIILFIDELHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLEEYRKYIEK 333
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQP+ +SEP+ E+A+ IL GLR++YEAHH K T EAI +AV LS RY+SDR+
Sbjct: 334 DSALERRFQPITVSEPTVEEAILILRGLRDRYEAHHRVKITDEAIESAVRLSDRYVSDRF 393
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQGSR 558
LPDKAIDL+DEA S+ + T ++ PPD EI ++ E V G
Sbjct: 394 LPDKAIDLMDEAASKVRL----------TSYIA-PPDLKSLEGEIERLKKEKEAAVAGQE 442
Query: 559 LKYDDVVASMGDT-----SEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ A + D+ E+ + + E ++V DDIA V + W+GIPV+++
Sbjct: 443 FEK---AAQLRDSEHKLKEELAKQREEWESKRQKENSMVLEDDIAQVVASWTGIPVKKLA 499
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE L KRVIGQD+AV A++RAV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 500 QAESERLLNLEEILHKRVIGQDDAVTAVARAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 559
Query: 674 ELAKSLAACYFG 685
EL +SLA FG
Sbjct: 560 ELGRSLAEAMFG 571
>gi|218895217|ref|YP_002443628.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
G9842]
gi|228905879|ref|ZP_04069776.1| Negative regulator of genetic competence [Bacillus thuringiensis
IBL 200]
gi|228963182|ref|ZP_04124351.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402562827|ref|YP_006605551.1| negative regulator of genetic competence ClpC/MecB [Bacillus
thuringiensis HD-771]
gi|423364494|ref|ZP_17341984.1| chaperone ClpB [Bacillus cereus VD022]
gi|423565560|ref|ZP_17541836.1| chaperone ClpB [Bacillus cereus MSX-A1]
gi|218542156|gb|ACK94550.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
G9842]
gi|228796440|gb|EEM43879.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228853694|gb|EEM98454.1| Negative regulator of genetic competence [Bacillus thuringiensis
IBL 200]
gi|401072913|gb|EJP81367.1| chaperone ClpB [Bacillus cereus VD022]
gi|401193762|gb|EJR00765.1| chaperone ClpB [Bacillus cereus MSX-A1]
gi|401791479|gb|AFQ17518.1| negative regulator of genetic competence ClpC/MecB [Bacillus
thuringiensis HD-771]
Length = 811
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSAT 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++++IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L R+IGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRLIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|337291601|ref|YP_004630622.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
ulcerans BR-AD22]
gi|334699907|gb|AEG84703.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
ulcerans BR-AD22]
Length = 885
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/617 (41%), Positives = 365/617 (59%), Gaps = 41/617 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPVGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
+ LGL +G A +VL +LG D+ + + L G E E + + G + +G
Sbjct: 107 FLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGESPENNESGGEAVGAGTG 166
Query: 258 KTAALKSPG---RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
A + G R+ + L+QF +LT A + +DPV+GRE EI+RI+Q+L RRTKNNP
Sbjct: 167 AARAGRGSGAGDRSNSLVLDQFGRNLTQAAKDGKLDPVVGREKEIERIMQVLSRRTKNNP 226
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ +
Sbjct: 227 VLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKV 286
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE
Sbjct: 287 LKEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDE 341
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA LS
Sbjct: 342 YRKHIEKDAALERRFQPVNVPEPSVEMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSD 401
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI+DR+LPDKA+DL+DEAG+R I+ + + DD E+R +
Sbjct: 402 RYINDRFLPDKAVDLIDEAGARMRIQRMTAPESIRKV------DDRIAEVRREKEAAIDA 455
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPV 609
Q + A + DT + E + D +E A VG + IA V W+GIPV
Sbjct: 456 QDF-----EKAAGLRDTERKLNEERAEKEKQWRSGDLEEIAEVGEEQIAEVLGNWTGIPV 510
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV A+SRA++R+R GLKDP RP+ + +F GP+G
Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIRRTRAGLKDPRRPSGSFIFAGPSG 570
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 571 VGKTELSKALANFLFGD 587
>gi|229159255|ref|ZP_04287279.1| Negative regulator of genetic competence [Bacillus cereus R309803]
gi|228624147|gb|EEK80949.1| Negative regulator of genetic competence [Bacillus cereus R309803]
Length = 811
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS +++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLDESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|433654066|ref|YP_007297774.1| ATPase with chaperone activity, ATP-binding subunit
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433292255|gb|AGB18077.1| ATPase with chaperone activity, ATP-binding subunit
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 810
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 274/632 (43%), Positives = 370/632 (58%), Gaps = 61/632 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKA 137
++F RF+E+A K + +Q EA+SL + V T+H+LLGLI E D + L++ G+T D
Sbjct: 2 AMFGRFSEKAQKVLYQAQEEARSLYHNYVGTEHILLGLIKEEDGIASRVLKNLGVTYDDI 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V ++ N P P KRV E + +R N+I E
Sbjct: 62 RAKVETLIGMGN-----------VPGDVVGYTP---RAKRVLELSFAEARRFNTNYIGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKE-GREPSLAKGVRENSIS 256
HI LGL +G A R+L LGVD N R++ E+ K EPS
Sbjct: 108 HILLGLIREGEGVAVRILMELGVDFN--------RVREEIVKMVSEEPS----------- 148
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
G + T L QF DLT A E +DPVIGRE EI+R+IQIL RRTKNNP L
Sbjct: 149 GAANKAQRAKNTNTPNLNQFGRDLTDLAREGKLDPVIGREKEIERVIQILSRRTKNNPCL 208
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAIAEGLA I +P L KR+++LDM ++AG K RGE E R+ +++
Sbjct: 209 IGEPGVGKTAIAEGLAEAIESGTIPEILKGKRVVTLDMASMVAGTKYRGEFEDRLKNVLN 268
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
E+ K+G+VILFIDE+HT+IG+G +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 269 EVIKAGNVILFIDELHTIIGAGAA-----EGAIDASNILKPALARGEIQVIGATTIDEYR 323
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+++ EPS E+ + IL GLR+KYEAHH K T EAI AA LS RY
Sbjct: 324 KYIEKDPALERRFQPIMVEEPSVEETIEILKGLRDKYEAHHRIKITDEAIEAAAKLSHRY 383
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDDYWQEIRTVQAMH 551
I+DRYLPDKAIDL+DEA SR ++ ++ E + +L+K D + IRT + +
Sbjct: 384 ITDRYLPDKAIDLIDEAASRVRLKTVTAPPEIKELEDKLNMLNK---DKEEAIRTQE--Y 438
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
E R + + + + ++SL VG ++I+ + SLW+GIP Q+
Sbjct: 439 EKAAKIRDEEQKIKEQLENLKSKWQQNSLVKDKS------VGAEEISQIVSLWTGIPTQK 492
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ +E L+ LEE L KRVIGQ+EAV A++RA++R+RVGLKDP RP + +F GPTGVG
Sbjct: 493 LAQEESERLLHLEEILHKRVIGQNEAVDAVARAIRRARVGLKDPRRPIGSFIFLGPTGVG 552
Query: 672 KTELAKSLAACYFGS----VRIHYLFFPSPFN 699
KTEL+K+LA FG VRI + F+
Sbjct: 553 KTELSKALAEAMFGDESAIVRIDMSEYMEKFS 584
>gi|384516372|ref|YP_005711464.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
ulcerans 809]
gi|334697573|gb|AEG82370.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
ulcerans 809]
Length = 885
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/617 (41%), Positives = 365/617 (59%), Gaps = 41/617 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPVGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
+ LGL +G A +VL +LG D+ + + L G E E + + G + +G
Sbjct: 107 FLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGESPENNESGGEAVGAGTG 166
Query: 258 KTAALKSPG---RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
A + G R+ + L+QF +LT A + +DPV+GRE EI+RI+Q+L RRTKNNP
Sbjct: 167 AARAGRGSGAGDRSNSLVLDQFGRNLTQAAKDGKLDPVVGREKEIERIMQVLSRRTKNNP 226
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ +
Sbjct: 227 VLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKV 286
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE
Sbjct: 287 LKEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDE 341
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA LS
Sbjct: 342 YRKHIEKDAALERRFQPVNVPEPSVEMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSD 401
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI+DR+LPDKA+DL+DEAG+R I+ + + DD E+R +
Sbjct: 402 RYINDRFLPDKAVDLIDEAGARMRIQRMTAPESIRKV------DDRIAEVRREKEAAIDA 455
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPV 609
Q + A + DT + E + D +E A VG + IA V W+GIPV
Sbjct: 456 QDF-----EKAAGLRDTERKLNEERAEKEKQWRSGDLEEIAEVGEEQIAEVLGNWTGIPV 510
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV A+SRA++R+R GLKDP RP+ + +F GP+G
Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIRRTRAGLKDPRRPSGSFIFAGPSG 570
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 571 VGKTELSKALANFLFGD 587
>gi|30260272|ref|NP_842649.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. Ames]
gi|42779162|ref|NP_976409.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
ATCC 10987]
gi|47525336|ref|YP_016685.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. 'Ames Ancestor']
gi|47569816|ref|ZP_00240486.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Bacillus
cereus G9241]
gi|49183115|ref|YP_026367.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. Sterne]
gi|49481552|ref|YP_034434.1| negative regulator of genetic competence clpC/mecB (ATP-dependent
Clp protease) [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|65317542|ref|ZP_00390501.1| COG0542: ATPases with chaperone activity, ATP-binding subunit
[Bacillus anthracis str. A2012]
gi|118475852|ref|YP_893003.1| negative regulator of genetic competence clpC/mecB [Bacillus
thuringiensis str. Al Hakam]
gi|165873139|ref|ZP_02217755.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0488]
gi|167635098|ref|ZP_02393415.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0442]
gi|167641960|ref|ZP_02400195.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0193]
gi|170689571|ref|ZP_02880757.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0465]
gi|170707575|ref|ZP_02898028.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0389]
gi|177655585|ref|ZP_02936966.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0174]
gi|190568958|ref|ZP_03021859.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. Tsiankovskii-I]
gi|196036353|ref|ZP_03103750.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
W]
gi|196041747|ref|ZP_03109037.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
NVH0597-99]
gi|196047734|ref|ZP_03114935.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
03BB108]
gi|206978371|ref|ZP_03239244.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
H3081.97]
gi|217957658|ref|YP_002336200.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
AH187]
gi|218901283|ref|YP_002449117.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
AH820]
gi|222093852|ref|YP_002527902.1| negative regulator of genetic competence clpc/mecb (ATP-dependent
clp protease) [Bacillus cereus Q1]
gi|225862134|ref|YP_002747512.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
03BB102]
gi|227812755|ref|YP_002812764.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. CDC 684]
gi|228925335|ref|ZP_04088431.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228931584|ref|ZP_04094490.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228943888|ref|ZP_04106273.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228983337|ref|ZP_04143550.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229089213|ref|ZP_04220494.1| Negative regulator of genetic competence [Bacillus cereus Rock3-42]
gi|229119744|ref|ZP_04249005.1| Negative regulator of genetic competence [Bacillus cereus 95/8201]
gi|229136928|ref|ZP_04265555.1| Negative regulator of genetic competence [Bacillus cereus
BDRD-ST26]
gi|229153860|ref|ZP_04281990.1| Negative regulator of genetic competence [Bacillus cereus ATCC
4342]
gi|229182476|ref|ZP_04309727.1| Negative regulator of genetic competence [Bacillus cereus BGSC 6E1]
gi|229194472|ref|ZP_04321275.1| Negative regulator of genetic competence [Bacillus cereus m1293]
gi|229601409|ref|YP_002864733.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0248]
gi|254684415|ref|ZP_05148275.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. CNEVA-9066]
gi|254724222|ref|ZP_05186007.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A1055]
gi|254733764|ref|ZP_05191479.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. Western North America USA6153]
gi|254744615|ref|ZP_05202294.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. Kruger B]
gi|254756320|ref|ZP_05208349.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. Vollum]
gi|254758398|ref|ZP_05210425.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. Australia 94]
gi|300119607|ref|ZP_07057151.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
SJ1]
gi|301051819|ref|YP_003790030.1| negative regulator of genetic competence clpC/mecB [Bacillus cereus
biovar anthracis str. CI]
gi|375282179|ref|YP_005102614.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
NC7401]
gi|376264109|ref|YP_005116821.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB [Bacillus
cereus F837/76]
gi|386733948|ref|YP_006207129.1| Negative regulator of genetic competence clpC/mecB [Bacillus
anthracis str. H9401]
gi|402554332|ref|YP_006595603.1| Negative regulator of genetic competence clpC/mecB [Bacillus cereus
FRI-35]
gi|421510407|ref|ZP_15957300.1| Negative regulator of genetic competence clpC/mecB [Bacillus
anthracis str. UR-1]
gi|421640496|ref|ZP_16081078.1| Negative regulator of genetic competence clpC/mecB [Bacillus
anthracis str. BF1]
gi|423357627|ref|ZP_17335222.1| chaperone ClpB [Bacillus cereus IS075]
gi|423376326|ref|ZP_17353640.1| chaperone ClpB [Bacillus cereus AND1407]
gi|423553984|ref|ZP_17530311.1| chaperone ClpB [Bacillus cereus ISP3191]
gi|423572073|ref|ZP_17548287.1| chaperone ClpB [Bacillus cereus MSX-A12]
gi|423578066|ref|ZP_17554185.1| chaperone ClpB [Bacillus cereus MSX-D12]
gi|423608093|ref|ZP_17583986.1| chaperone ClpB [Bacillus cereus VD102]
gi|30253593|gb|AAP24135.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. Ames]
gi|42735077|gb|AAS39017.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
ATCC 10987]
gi|47500484|gb|AAT29160.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. 'Ames Ancestor']
gi|47553509|gb|EAL11890.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Bacillus
cereus G9241]
gi|49177042|gb|AAT52418.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. Sterne]
gi|49333108|gb|AAT63754.1| negative regulator of genetic competence clpC/mecB (ATP-dependent
Clp protease) [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|118415077|gb|ABK83496.1| negative regulator of genetic competence clpC/mecB [Bacillus
thuringiensis str. Al Hakam]
gi|164711119|gb|EDR16680.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0488]
gi|167510091|gb|EDR85502.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0193]
gi|167529572|gb|EDR92322.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0442]
gi|170127571|gb|EDS96445.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0389]
gi|170666484|gb|EDT17261.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0465]
gi|172080049|gb|EDT65147.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0174]
gi|190559882|gb|EDV13866.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. Tsiankovskii-I]
gi|195990983|gb|EDX54954.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
W]
gi|196021437|gb|EDX60143.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
03BB108]
gi|196027367|gb|EDX65984.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
NVH0597-99]
gi|206743432|gb|EDZ54866.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
H3081.97]
gi|217064980|gb|ACJ79230.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
AH187]
gi|218540030|gb|ACK92428.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
AH820]
gi|221237900|gb|ACM10610.1| negative regulator of genetic competence clpC/mecB (ATP-dependent
Clp protease) [Bacillus cereus Q1]
gi|225787223|gb|ACO27440.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
03BB102]
gi|227007271|gb|ACP17014.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. CDC 684]
gi|228588938|gb|EEK46953.1| Negative regulator of genetic competence [Bacillus cereus m1293]
gi|228600931|gb|EEK58500.1| Negative regulator of genetic competence [Bacillus cereus BGSC 6E1]
gi|228629541|gb|EEK86238.1| Negative regulator of genetic competence [Bacillus cereus ATCC
4342]
gi|228646466|gb|EEL02673.1| Negative regulator of genetic competence [Bacillus cereus
BDRD-ST26]
gi|228663645|gb|EEL19224.1| Negative regulator of genetic competence [Bacillus cereus 95/8201]
gi|228694052|gb|EEL47734.1| Negative regulator of genetic competence [Bacillus cereus Rock3-42]
gi|228776327|gb|EEM24680.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228815721|gb|EEM61957.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228828012|gb|EEM73740.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228834257|gb|EEM79798.1| Negative regulator of genetic competence [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|229265817|gb|ACQ47454.1| negative regulator of genetic competence ClpC/MecB [Bacillus
anthracis str. A0248]
gi|298723079|gb|EFI63977.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
SJ1]
gi|300373988|gb|ADK02892.1| negative regulator of genetic competence clpC/mecB [Bacillus cereus
biovar anthracis str. CI]
gi|358350702|dbj|BAL15874.1| negative regulator of genetic competence ClpC/MecB [Bacillus cereus
NC7401]
gi|364509909|gb|AEW53308.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB [Bacillus
cereus F837/76]
gi|384383800|gb|AFH81461.1| Negative regulator of genetic competence clpC/mecB [Bacillus
anthracis str. H9401]
gi|401074493|gb|EJP82893.1| chaperone ClpB [Bacillus cereus IS075]
gi|401088783|gb|EJP96965.1| chaperone ClpB [Bacillus cereus AND1407]
gi|401182191|gb|EJQ89330.1| chaperone ClpB [Bacillus cereus ISP3191]
gi|401198795|gb|EJR05708.1| chaperone ClpB [Bacillus cereus MSX-A12]
gi|401203646|gb|EJR10482.1| chaperone ClpB [Bacillus cereus MSX-D12]
gi|401238776|gb|EJR45209.1| chaperone ClpB [Bacillus cereus VD102]
gi|401795542|gb|AFQ09401.1| Negative regulator of genetic competence clpC/mecB [Bacillus cereus
FRI-35]
gi|401819489|gb|EJT18666.1| Negative regulator of genetic competence clpC/mecB [Bacillus
anthracis str. UR-1]
gi|403392312|gb|EJY89566.1| Negative regulator of genetic competence clpC/mecB [Bacillus
anthracis str. BF1]
Length = 811
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS +++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLDESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|384177987|ref|YP_005563749.1| negative regulator of genetic competence clpC/mecB [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|324324071|gb|ADY19331.1| negative regulator of genetic competence clpC/mecB [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 811
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS +++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLDESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|229170933|ref|ZP_04298534.1| Negative regulator of genetic competence [Bacillus cereus MM3]
gi|423405194|ref|ZP_17382367.1| chaperone ClpB [Bacillus cereus BAG2X1-2]
gi|423462644|ref|ZP_17439438.1| chaperone ClpB [Bacillus cereus BAG5X2-1]
gi|423480037|ref|ZP_17456751.1| chaperone ClpB [Bacillus cereus BAG6X1-1]
gi|228612473|gb|EEK69694.1| Negative regulator of genetic competence [Bacillus cereus MM3]
gi|401130823|gb|EJQ38479.1| chaperone ClpB [Bacillus cereus BAG5X2-1]
gi|401645564|gb|EJS63219.1| chaperone ClpB [Bacillus cereus BAG2X1-2]
gi|402424021|gb|EJV56217.1| chaperone ClpB [Bacillus cereus BAG6X1-1]
Length = 811
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 263/624 (42%), Positives = 365/624 (58%), Gaps = 79/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS +++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLDESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRA--------------HIELFKRKKEQQTCILSKPPDDYWQEIRT 546
+LPDKAIDL+DEA S+ ++L + +KE+ + S QE
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQS-------QEFEK 439
Query: 547 VQAMHEVVQGSRLKYDDVVASM-----GDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
++ ++ Q R K +D + SE+ VE DIA V
Sbjct: 440 AASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVE------------------DIANVV 481
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
S W+ IPV ++ E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP +
Sbjct: 482 STWTRIPVSKLAQTETDKLLNLESILHNRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGS 541
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 542 FIFLGPTGVGKTELARALAESMFG 565
>gi|383314945|ref|YP_005375800.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis P54B96]
gi|384509550|ref|YP_005686218.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis I19]
gi|385808249|ref|YP_005844646.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 267]
gi|308277132|gb|ADO27031.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis I19]
gi|380870446|gb|AFF22920.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis P54B96]
gi|383805642|gb|AFH52721.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 267]
Length = 885
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/617 (41%), Positives = 365/617 (59%), Gaps = 41/617 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPVGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
+ LGL +G A +VL +LG D+ + + L G E E + + G + +G
Sbjct: 107 FLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGESPENNESGGEAVGAGTG 166
Query: 258 KTAALKSPG---RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
A + G R+ + L+QF +LT A + +DPV+GRE EI+RI+Q+L RRTKNNP
Sbjct: 167 AARAGRGSGAGDRSNSLVLDQFGRNLTQAAKDGKLDPVVGREKEIERIMQVLSRRTKNNP 226
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ +
Sbjct: 227 VLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKV 286
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE
Sbjct: 287 LKEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDE 341
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA LS
Sbjct: 342 YRKHIEKDAALERRFQPVNVPEPSVEMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSD 401
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI+DR+LPDKA+DL+DEAG+R I+ + + DD E+R +
Sbjct: 402 RYINDRFLPDKAVDLIDEAGARMRIQRMTAPESIRKV------DDRIAEVRREKEAAIDA 455
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPV 609
Q + A + DT + E + D +E A VG + IA V W+GIPV
Sbjct: 456 QDF-----EKAAGLRDTERKLNEERAEKEKQWRSGDLEEIAEVGEEQIAEVLGNWTGIPV 510
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV A+SRA++R+R GLKDP RP+ + +F GP+G
Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIRRTRAGLKDPRRPSGSFIFAGPSG 570
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 571 VGKTELSKALANFLFGD 587
>gi|379752482|ref|YP_005341154.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
intracellulare MOTT-02]
gi|379759922|ref|YP_005346319.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
intracellulare MOTT-64]
gi|387873864|ref|YP_006304168.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium sp.
MOTT36Y]
gi|443308784|ref|ZP_21038570.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium sp.
H4Y]
gi|378802698|gb|AFC46833.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
intracellulare MOTT-02]
gi|378807864|gb|AFC51998.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
intracellulare MOTT-64]
gi|386787322|gb|AFJ33441.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium sp.
MOTT36Y]
gi|442763900|gb|ELR81899.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium sp.
H4Y]
Length = 847
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 359/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDPALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|379745192|ref|YP_005336013.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
intracellulare ATCC 13950]
gi|378797556|gb|AFC41692.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
intracellulare ATCC 13950]
Length = 847
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 359/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDPALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|312144275|ref|YP_003995721.1| ATPase AAA-2 domain-containing protein [Halanaerobium
hydrogeniformans]
gi|311904926|gb|ADQ15367.1| ATPase AAA-2 domain protein [Halanaerobium hydrogeniformans]
Length = 817
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/613 (41%), Positives = 361/613 (58%), Gaps = 60/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F +FTERA K + +++EA L V T+H+L GLIAE + +++GI+ D
Sbjct: 1 MFAKFTERARKVLSIAEQEALKLKHSYVGTEHILYGLIAEGQGIAARALIDNGISRDIVE 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + N+ + + +K+V A++ +R G+N+I EH
Sbjct: 61 NKIEDMIGKGQNE-------------VKGSIGLTPRSKKVLNLAMDEARKMGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A R+L L D+ ++ V L G+ N++ K
Sbjct: 108 LLLGLIREGEGVAVRILMDLNSDIKNIKEEVVDLLGGK----------------NAVQKK 151
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ KS R + L+++ DLT A E +DPVIGR+ EI R+IQ+L RRTKNNP+L+G
Sbjct: 152 S---KSSNR-KTKNLDEYSRDLTDMARENKLDPVIGRDKEINRVIQVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAI EGLA IV VP LL+KR++SLD+ L+AG+K RGE E R+ +++EI
Sbjct: 208 EPGVGKTAIIEGLAQMIVSENVPDLLLNKRVVSLDLSSLVAGSKYRGEFEQRLKAVMNEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+SG++ILFIDE+HTL+G+G +D +N+LKP+L RGELQ + +TT DE+R
Sbjct: 268 IESGEIILFIDEMHTLVGAGAA-----EGAIDAANILKPALARGELQAVGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQ VL+ E S E+A+ IL GLR+ YEAHH + T AI AV LS RYIS
Sbjct: 323 IEKDAALERRFQSVLVEENSVEEAIDILKGLRDPYEAHHKVEITDRAIEDAVVLSHRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + ++PP+ ++E+ E + +
Sbjct: 383 DRFLPDKAIDLIDEAASKVRL-----------SNSTRPPE--FKELSRKLEEAEKEKEAA 429
Query: 559 LKYDDV--VASMGDTSEIVVESSLPSASD-DDEP----AVVGPDDIAAVASLWSGIPVQQ 611
+K + A M D + + + + ++E AVV +DIA + S W+GIPV +
Sbjct: 430 VKNQEFEKAARMRDKEKKLKKELEELKNSWENEKGKAEAVVTTEDIAEIVSSWTGIPVTK 489
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ E L+ LEE+L KRVIGQDEA+ A+S AV+R+R GLKDP RP + +F GPTGVG
Sbjct: 490 LEEAETARLLRLEEELHKRVIGQDEAITAVSEAVRRARAGLKDPKRPIGSFIFLGPTGVG 549
Query: 672 KTELAKSLAACYF 684
KTELAK+LA F
Sbjct: 550 KTELAKTLAETMF 562
>gi|254823225|ref|ZP_05228226.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
intracellulare ATCC 13950]
Length = 847
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 359/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDPALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|29829142|ref|NP_823776.1| ATP-dependent Clp protease [Streptomyces avermitilis MA-4680]
gi|29606248|dbj|BAC70311.1| putative ATP-dependent Clp protease [Streptomyces avermitilis
MA-4680]
Length = 842
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/616 (41%), Positives = 370/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+E ++ G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG--YHQGKESTVEGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE++
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYKKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ A L+ RY+S
Sbjct: 329 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYVS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIAGVRHDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + D D A V + IA V + +GIPV
Sbjct: 434 SAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKTGDMDVVAEVDGELIAEVLAASTGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +AV A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+++LA FG
Sbjct: 554 VGKTELSRALAEFLFG 569
>gi|152973929|ref|YP_001373446.1| ATPase [Bacillus cytotoxicus NVH 391-98]
gi|152022681|gb|ABS20451.1| ATPase AAA-2 domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 811
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 261/610 (42%), Positives = 364/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ + + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKIQKEVEALIGRGTEVSQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + + +S + T
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEAASGHQGA-------SSTNANTP 162
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L S R DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 163 TLDSLAR-----------DLTVIARESRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++++IL GLR++YEAHH T +AI AV LS RYI+DR
Sbjct: 327 KDAALERRFQPIQVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIEVAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|423399355|ref|ZP_17376553.1| chaperone ClpB [Bacillus cereus BAG2X1-1]
gi|423409869|ref|ZP_17387018.1| chaperone ClpB [Bacillus cereus BAG2X1-3]
gi|401644455|gb|EJS62145.1| chaperone ClpB [Bacillus cereus BAG2X1-1]
gi|401652409|gb|EJS69966.1| chaperone ClpB [Bacillus cereus BAG2X1-3]
Length = 811
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 263/624 (42%), Positives = 364/624 (58%), Gaps = 79/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSAT 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E++++IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRA--------------HIELFKRKKEQQTCILSKPPDDYWQEIRT 546
+LPDKAIDL+DEA S+ + L + +KE+ + S QE
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSYTTPPNLKELEVNLEEIRKEKDAAVQS-------QEFEK 439
Query: 547 VQAMHEVVQGSRLKYDDVVASM-----GDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
++ ++ Q R K +D + SE+ VE DIA V
Sbjct: 440 AASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVE------------------DIANVV 481
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
S W+ IPV ++ E L+ LE L R+IGQDEAV A+++AV+R+R GLKDP RP +
Sbjct: 482 STWTRIPVSKLAQTETDKLLNLESILHDRLIGQDEAVVAVAKAVRRARAGLKDPKRPIGS 541
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 542 FIFLGPTGVGKTELARALAESMFG 565
>gi|423614628|ref|ZP_17590485.1| chaperone ClpB [Bacillus cereus VD107]
gi|401237472|gb|EJR43924.1| chaperone ClpB [Bacillus cereus VD107]
Length = 811
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/610 (42%), Positives = 365/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARESRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ E++V+IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPNLEESVQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L R+IGQ+EAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRLIGQEEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|376291130|ref|YP_005163377.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae C7 (beta)]
gi|372104526|gb|AEX68123.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
diphtheriae C7 (beta)]
Length = 878
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/616 (40%), Positives = 361/616 (58%), Gaps = 40/616 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + A +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPAGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPS--LAKGVRENSI 255
+ LGL DG A +VL +LG D+ + + L G E E +
Sbjct: 107 FLLLGLIREGDGVAAQVLVKLGADLPRVRQQVIQLLSGYEGGESPENNNDGEAVGAGTGA 166
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ R+ + L+QF +LT A E +DPV+GRE EI+RI+Q+L RRTKNNP+
Sbjct: 167 GRAGRGGGAGERSNSLVLDQFGRNLTQAAKEGKLDPVVGREQEIERIMQVLSRRTKNNPV 226
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ ++
Sbjct: 227 LIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQVYSLDLGSLVAGSRYRGDFEERLKKVL 286
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE+
Sbjct: 287 KEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDEY 341
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS + + IL GLR++YEAHH T A+ AA LS R
Sbjct: 342 RKHIEKDAALERRFQPVQVPEPSVDMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSDR 401
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI+DR+LPDKA+DL+DEAG+R I KR ++ + DD E+R + Q
Sbjct: 402 YINDRFLPDKAVDLIDEAGARMRI---KRMTAPESI---RKVDDQIAEVRREKEAAIDAQ 455
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ A + DT + E + + ++ A VG + IA V W+GIPV
Sbjct: 456 DF-----EKAAGLRDTERKLGEERAEKEKQWRSGNLEDIAEVGEEQIAEVLGNWTGIPVF 510
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L+ +E++L KR+IGQD+AV ++SRA++R+R GLKDP RP+ + +F GP+GV
Sbjct: 511 KLTEEESSRLLHMEDELHKRIIGQDDAVKSVSRAIRRTRAGLKDPRRPSGSFIFAGPSGV 570
Query: 671 GKTELAKSLAACYFGS 686
GKTEL+KSLA FG
Sbjct: 571 GKTELSKSLANFLFGD 586
>gi|357390336|ref|YP_004905176.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Kitasatospora
setae KM-6054]
gi|311896812|dbj|BAJ29220.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
[Kitasatospora setae KM-6054]
Length = 838
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 373/616 (60%), Gaps = 57/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG-YQTTGKESATAGGPAEGTPS-- 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 165 ----------TSLVLDQFGRNLTQAAREAKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQAIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 330 LEKDAALERRFQPIQVAEPSLAHTIEILKGLRDRYEAHHRVSITDAALVAAATLADRYIS 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 390 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIADVRREKE---- 434
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++++ A D D A V + IA V + +GIPV
Sbjct: 435 SAIDAQDFEKAASLRDNEKQLLQAKAKREKEWKAGDMDVVAEVDEELIAEVLATATGIPV 494
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ++A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 495 FKLTEEESSRLLRMEDELHKRVIGQEDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 554
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 555 VGKTELSKTLAEFLFG 570
>gi|386852989|ref|YP_006271002.1| Chaperone protein clpB [Actinoplanes sp. SE50/110]
gi|359840493|gb|AEV88934.1| Chaperone protein clpB [Actinoplanes sp. SE50/110]
Length = 840
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 257/617 (41%), Positives = 371/617 (60%), Gaps = 58/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G +G+EP+ A
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG---YQGKEPAAAG---------T 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 156 ATGEAAP--STSLVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGL+ IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLSQSIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVGEPSLAHTIEILKGLRDRYEAHHRISITDAALVAAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R I ++ PPD D+ + I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLRDFDERIAQVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D A + D + ++ A D D + V + IA V W+GIPV
Sbjct: 434 SAIDAQDFERAAQLRDKEKQLLGQKAQREKEWKAGDLDVVSEVDDEQIAEVLGNWTGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+G
Sbjct: 494 YKLTEEETSRLLRMEDELHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FGS
Sbjct: 554 VGKTELSKALAEFLFGS 570
>gi|182420087|ref|ZP_02951321.1| negative regulator of genetic competence ClpC/mecB [Clostridium
butyricum 5521]
gi|237666342|ref|ZP_04526327.1| putative negative regulator of genetic competence MecB/ClpC
[Clostridium butyricum E4 str. BoNT E BL5262]
gi|182376124|gb|EDT73711.1| negative regulator of genetic competence ClpC/mecB [Clostridium
butyricum 5521]
gi|237657541|gb|EEP55096.1| putative negative regulator of genetic competence MecB/ClpC
[Clostridium butyricum E4 str. BoNT E BL5262]
Length = 814
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 244/611 (39%), Positives = 359/611 (58%), Gaps = 48/611 (7%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKAREA 140
+ + TERA ++ ++ E++ V T+H+LLG++ E+ + L+ GI ++ RE
Sbjct: 3 YSKLTERAQVVILEAEGESEKFKHGYVGTEHILLGILKENGYSATLLKKHGIYLENIREM 62
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ G + + + TKR+ + + ++ + F+ PEHI
Sbjct: 63 LQRYL------------GYGDITKTGDDILLTPRTKRLLDESFSEAKKLDHRFVGPEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L L ++G A +LK L ++ +++ L G + +N T
Sbjct: 111 LALVAQEEGMAYTILKSLKLNFDNIKEELTQFLSG--------GNYEDKAVDNESEHNTK 162
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
K+P L+++ DLT A E +DPVIGR+ E QR+++ILCRR KNNP L+GE
Sbjct: 163 KEKTP------MLDKYGRDLTQLAQEGALDPVIGRDIENQRVLEILCRRIKNNPCLIGEP 216
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTA+ EGLA RI+ VP L +KR++SLD+ ++AGAK RGE E R+ + EI+K
Sbjct: 217 GVGKTAVIEGLAQRIIDGNVPEILKNKRVISLDLTSMIAGAKYRGEFEERLKKTMDEIRK 276
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
VI+FIDE+HT+IG+G G +G +D SN+LKP+L RGE+QCI +TT DE+R E
Sbjct: 277 DKSVIIFIDEIHTIIGAG----GAEG-AIDASNILKPALARGEIQCIGATTIDEYRKYIE 331
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EPS+ED + IL GLR+KYEAHH K T EA+ AAV+LS RYI+DR
Sbjct: 332 KDSALERRFQPVTVEEPSKEDTLEILKGLRDKYEAHHRVKITDEALVAAVNLSDRYITDR 391
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
++PDKAIDL+DE ++ IE L++PP+ E R E ++
Sbjct: 392 FMPDKAIDLIDEGAAKVRIE-----------SLTEPPELKEIEERIALIDKEKEDAIMIQ 440
Query: 561 YDDVVASMGDT-----SEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ A++ D +E+ + +A + +V + IA V S+W+ IP++++T
Sbjct: 441 DFEKAANLRDNEKELKTELENKKKEWNAQSSSKLLIVDKEKIANVVSVWTNIPIEKLTES 500
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE+ L KRVIGQ+EAV +I+RAV+R+RVG+KDPNRP + +F GPTGVGKTEL
Sbjct: 501 ESEKLLHLEDILHKRVIGQNEAVKSIARAVRRARVGIKDPNRPIGSFIFLGPTGVGKTEL 560
Query: 676 AKSLAACYFGS 686
+K+LA FG
Sbjct: 561 SKALAEAMFGD 571
>gi|302870292|ref|YP_003838929.1| ATPase AAA-2 domain-containing protein [Micromonospora aurantiaca
ATCC 27029]
gi|315503432|ref|YP_004082319.1| ATPase AAA-2 domain-containing protein [Micromonospora sp. L5]
gi|302573151|gb|ADL49353.1| ATPase AAA-2 domain protein [Micromonospora aurantiaca ATCC 27029]
gi|315410051|gb|ADU08168.1| ATPase AAA-2 domain protein [Micromonospora sp. L5]
Length = 845
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/617 (41%), Positives = 368/617 (59%), Gaps = 58/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE A G S S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEPAAAGAAPGEAAPSTS-- 165
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 166 ------------LVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGL+ +I++ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLSQKIIKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVGEPSLAHTIEILKGLRDRYEAHHRVSITDAALVAAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R I ++ PPD D+ + I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLRDFDERIAQVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D A + DT + ++ A D D + V + IA V W+GIPV
Sbjct: 434 SAIDAQDFERAAQLRDTEKQLLGQKAQREKEWKAGDLDVVSEVDDEQIAEVLGNWTGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+G
Sbjct: 494 YKLTEEETSRLLRMEDELHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FGS
Sbjct: 554 VGKTELSKALAEFLFGS 570
>gi|379058467|ref|ZP_09848993.1| Clp-family ATP-binding protease [Serinicoccus profundi MCCC
1A05965]
Length = 841
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/614 (40%), Positives = 362/614 (58%), Gaps = 49/614 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI E LES I++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHLLLGLIHEGEGVAAKALESLDISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ S +PF+ K+V E ++ G+N+I EH
Sbjct: 61 QQVQEII------------GQGQQ-SPTGHIPFTPRAKKVLELSLREGLQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL +LG D+N + ++ L G KE + +G
Sbjct: 108 LLLGLIREGEGVAAQVLVKLGADLNRVRQQVITLLSGYQGKEA------------ATAGV 155
Query: 259 TAALKSPGRTRAS-ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
A + G+ S L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+
Sbjct: 156 GAGSQQEGQQAGSLVLDQFGRNLTQAAREGKLDPVIGREPEIERVMQVLSRRTKNNPVLI 215
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+ EGLA IV+ +VP L K++ +LD+G L+AG++ RG+ E R+ ++ E
Sbjct: 216 GEPGVGKTAVVEGLAQDIVRGDVPETLKEKQLYTLDLGALVAGSRYRGDFEERLKKVLKE 275
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 276 IRTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRK 330
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ ++EP+ + A+ IL GLR++YEAHH T A+ AA ++ RYI
Sbjct: 331 HIEKDAALERRFQPIQVAEPTLKHAIEILKGLRDRYEAHHRVTITDGALIAAATMADRYI 390
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
+DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 391 NDRFLPDKAIDLIDEAGARLRIRR-----------MTAPPDLREFDEKIAHAKREKESAI 439
Query: 558 RLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + A + D + ++ D D A V + IA V + +GIPV ++
Sbjct: 440 DAQDFEKAARLRDEEHKLTQARAEREKEWKNGDMDVVAEVDEELIAEVLAAATGIPVFKL 499
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+ +E L+ +E++L KR+IG D+A+ +S+A++R+R GLKDP RP + +F GPTGVGK
Sbjct: 500 SEEESSRLLNMEQELHKRIIGMDDAIKGLSQAIRRTRAGLKDPRRPGGSFIFAGPTGVGK 559
Query: 673 TELAKSLAACYFGS 686
TELAK+LA FG
Sbjct: 560 TELAKALAEFLFGD 573
>gi|374312101|ref|YP_005058531.1| ATPase AAA-2 domain-containing protein [Granulicella mallensis
MP5ACTX8]
gi|358754111|gb|AEU37501.1| ATPase AAA-2 domain protein [Granulicella mallensis MP5ACTX8]
Length = 825
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 242/619 (39%), Positives = 369/619 (59%), Gaps = 42/619 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLESGITIDKARE 139
+FER+TE+A + + F++ EA G + T+HLLLGL+ ED+ N FL S +++ R+
Sbjct: 1 MFERYTEKARRVIFFARYEASQFGSPYIETEHLLLGLLREDKALTNRFLRSHASVESIRK 60
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ H+T + S++ +P S KRV A E + + I EH+
Sbjct: 61 QIEQ--HTTVREKV----------STSVDLPLSNECKRVLAYAAEEAERLSHKHIGTEHL 108
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL + A +L G+ + + RE L + +E
Sbjct: 109 LLGLLREEKCFAAEILTERGLRLPTI----------------RE-ELQRTTQEKPAQQSG 151
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+ + G+ S L +F DLT A+++ +DP++GR+ E++R+IQILCRRTKNNP+L+GE
Sbjct: 152 GSKQRGGQQEQSLLAEFSRDLTQAAADQQLDPLVGRDFEVERVIQILCRRTKNNPVLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA +I EVP FL KR++SLD+ L++AG K RG+ E R+ T++ E+
Sbjct: 212 PGVGKTAIVEGLAQKIADGEVPSFLADKRVLSLDLSLIVAGTKYRGQFEERLKTIMKELM 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++ + I+FIDE+HTL+G+G+ +G+ LD +N+LKP+L RGE+QCI +TT E+R
Sbjct: 272 ENQNSIVFIDELHTLVGAGSA----EGS-LDAANILKPALSRGEIQCIGATTPAEYRKSI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD++L RRFQ V + P++EDA++I++G+REKYE H +T +AI +V S RYI D
Sbjct: 327 EKDRSLERRFQAVKVPPPNEEDAIKIIMGIREKYEKFHAVSYTDDAITFSVSHSNRYIPD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEAG+R ++L + ++ + K + A HE + +R
Sbjct: 387 RFLPDKAIDLIDEAGAR--VKLRQTTLPEELTEVQKRIKFIVHRMENAIANHE-FEKARF 443
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERML 619
D+ + + + L D++ +V +DI V S W+G+P+ I +E
Sbjct: 444 YSDEERKERENLRVLRDKYHL----DENSAGIVTREDIEDVVSRWTGVPITSIKEEETQK 499
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ +EE+L KRVI QD+A++A++RA++RSR GLK+P RP + LF GPTGVGKTE+A++L
Sbjct: 500 LLRVEEELHKRVIAQDKAISALARAIRRSRAGLKNPARPIGSFLFLGPTGVGKTEVARTL 559
Query: 680 AACYFGSVRIHYLFFPSPF 698
A FGS + F S F
Sbjct: 560 AQFLFGSEKSLIRFDMSEF 578
>gi|70727483|ref|YP_254399.1| endopeptidase Clp ATP-binding subunit C [Staphylococcus
haemolyticus JCSC1435]
gi|122063324|sp|Q4L3I4.1|CLPC_STAHJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|68448209|dbj|BAE05793.1| endopeptidas Clp ATP-binding chain C [Staphylococcus haemolyticus
JCSC1435]
Length = 824
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/624 (40%), Positives = 348/624 (55%), Gaps = 80/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + +Q + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDQ--------------TGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V K + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPEM 147
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 148 SNKNATANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPTVEDTIAILKGLRDRYEAHHRINISDEALEAAAKLSDC 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYW 541
Y+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPNNLKEIEQEIEKVKNEKDAAV-------HA 433
Query: 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
QE + + +Y+D T D+ + +DI V
Sbjct: 434 QEFENAANLRDKQTKLEKQYEDAKNEWKTTQ-------------GDQSTSLSKEDIGEVI 480
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
+ W+GIP+ +I E L+ LE+ L RVIGQ++AV +IS+AV+R+R GLKDP RP +
Sbjct: 481 AGWTGIPLTKINETESDRLLNLEQTLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGS 540
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 541 FIFLGPTGVGKTELARALAESMFG 564
>gi|403669832|ref|ZP_10935008.1| negative regulator of genetic competence clpC/mecB [Kurthia sp.
JC8E]
Length = 817
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 263/613 (42%), Positives = 365/613 (59%), Gaps = 55/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F FT+RA K + +Q EA + + + T+H+LLGLI E +GI KA EA
Sbjct: 2 MFNHFTQRAQKVLQLAQEEAIRMKHEAIGTEHILLGLIREG--------TGIAA-KALEA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + + + G S + ++ K+V E +V+ SR G+ +I EHI
Sbjct: 53 I-EVTPEMIEEGIEKLVGVGTK-DSGPVVHYTPRAKKVIELSVDESRKLGHTYIGTEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L L +G A RVL GV ++ A V +L G + + T
Sbjct: 111 LALIREGEGVAARVLNNEGVSLSK-ARQQVLQLLGS----------------HDTNAGTG 153
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ L+ DLT A E +DPVIGR EI R+I++L RRTKNNP+L+GE
Sbjct: 154 GANATQTASTPTLDSLARDLTQIAREGSLDPVIGRSKEITRVIEVLSRRTKNNPVLIGEP 213
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 214 GVGKTAIAEGLAQQIIHNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 273
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 274 AGNVILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 328
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS E+A++I+ GLR++YEAHH K T EA+ AAV LS RYISDR
Sbjct: 329 KDAALERRFQPIQVDEPSPEEAIQIIRGLRDRYEAHHRVKITDEAVEAAVTLSNRYISDR 388
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQA-MHEVVQGS 557
+LPDKAIDL+DEAGS+ + + + PP+ + Q++ ++A + VQG
Sbjct: 389 FLPDKAIDLMDEAGSKVRLRSY-----------TTPPNLKELEQKLEQIKAEKNSAVQGQ 437
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDEP-----AVVGPDDIAAVASLWSGIPVQQI 612
+ A + DT + + + + + E + V +DIA V ++W+GIPV +I
Sbjct: 438 EFEK---AAGLRDTEQKLKDELDATKKEWKEKQGRAESKVTVNDIAEVVAMWTGIPVAKI 494
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ LEE+L KRV+GQ AV AISRA++R+R GLKDP RP + +F GPTGVGK
Sbjct: 495 AQEESEKLLNLEEELHKRVVGQGAAVEAISRAIRRARAGLKDPKRPIGSFIFLGPTGVGK 554
Query: 673 TELAKSLAACYFG 685
TEL ++LA FG
Sbjct: 555 TELGRALAEVMFG 567
>gi|400535256|ref|ZP_10798793.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
colombiense CECT 3035]
gi|400331614|gb|EJO89110.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
colombiense CECT 3035]
Length = 848
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/613 (40%), Positives = 360/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGQVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVV-----ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVGQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|429757829|ref|ZP_19290359.1| negative regulator of genetic competence ClpC/MecB [Actinomyces sp.
oral taxon 181 str. F0379]
gi|429174420|gb|EKY15897.1| negative regulator of genetic competence ClpC/MecB [Actinomyces sp.
oral taxon 181 str. F0379]
Length = 821
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 273/620 (44%), Positives = 372/620 (60%), Gaps = 59/620 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+SL + + T+HLLLGLI E LES I D R
Sbjct: 1 MFERFTDRARRVVVLAQDEARSLNHNYIGTEHLLLGLITEGEGVAAKALESLDINKDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
AV+ I KP +PF+ KRVFE ++ + G+N+I EH
Sbjct: 61 AAVIDIIGEGE-----------KPVE--GHIPFTPRAKRVFELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG--ELAKEGREPSLAKGVRENSIS 256
+ LGL +G A +VL +LG D+ + + L G + +GRE
Sbjct: 108 LLLGLLKEGEGVASQVLIKLGADLGKVRQTVIELLSGYQRNSDDGRESV----------- 156
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
G A+ G+T ++ LEQF +LT A E +DPVIGR TE+QR++QIL RRTKNNP+L
Sbjct: 157 GVGASSTGSGQTNSAILEQFGRNLTQAARENKLDPVIGRRTEMQRVMQILSRRTKNNPVL 216
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+ EGLA IV +VP + K+I SLDMG L+AG++ RG+ E R+ ++
Sbjct: 217 VGEPGVGKTAVVEGLAQAIVAGDVPETIKDKQIYSLDMGALVAGSRYRGDFEERLKKILK 276
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ GD+ILFIDE+HTL+G+G +G+ +D S +LKP L RGELQ I +TT DE+R
Sbjct: 277 EIRTRGDIILFIDEIHTLVGAGAA----EGS-IDASQMLKPMLARGELQTIGATTSDEYR 331
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQPV + EPS E+ V IL GLR++YEAHH T AI AA L+ RY
Sbjct: 332 KYIEKDAALERRFQPVKVDEPSVEETVGILKGLRDRYEAHHRVIITDAAIQAAAELADRY 391
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQ 555
+SDR+LPDKAIDL+DEAG+R I ++ PP E+R + + + EV +
Sbjct: 392 VSDRFLPDKAIDLMDEAGARLRI-----------SRMTAPP-----ELRELDEKIAEVKR 435
Query: 556 GSRLKYDD----VVASMGDTSEIVVESSLPSAS---DDDEPAV--VGPDDIAAVASLWSG 606
DD A++ D + + E S D A+ VG DDIA V ++ +G
Sbjct: 436 NKESAIDDQDFEKAAALRDEEQKLTEERKQKESSWRDGSREAIAEVGEDDIAEVLAMSTG 495
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E++L KRVIGQD AV A++++++R+R GLKDP RP + +F G
Sbjct: 496 IPVFKLTQTESAKLLKMEDELHKRVIGQDAAVKALAQSIRRTRSGLKDPKRPGGSFIFAG 555
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAK+LA FG
Sbjct: 556 PTGVGKTELAKALAEFLFGD 575
>gi|405979476|ref|ZP_11037819.1| hypothetical protein HMPREF9241_00542 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391892|gb|EJZ86953.1| hypothetical protein HMPREF9241_00542 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 822
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 265/620 (42%), Positives = 373/620 (60%), Gaps = 58/620 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI+E I D R
Sbjct: 1 MFERFTDRARRVVVLAQDEARGLKHNYIGTEHLLLGLISEGEGVAAKALAMMDINDDDVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+V+ I +G+ + +PF+ KRVFE ++ + G+N+I EH
Sbjct: 61 ASVIEII------------GEGEK-TVEGHIPFTPRAKRVFELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG--ELAKEGREPSLAKGVRENSIS 256
+ LGL +G A +VL + G D++ + + L G EGRE S+ GV +S
Sbjct: 108 LLLGLLKEGEGVAAQVLTKRGADLSQVRQNVIQLLSGYQRGEGEGRE-SVGAGVGGSS-- 164
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
+ R ++ LEQF +LT A + +DPVIGR E++R++Q+L RRTKNNP+L
Sbjct: 165 -------THERQNSAVLEQFGRNLTQAARDNKLDPVIGRRVEMERVMQVLSRRTKNNPVL 217
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+ EGLA IV +VP + ++I SLDMG L+AG++ RG+ E R+ ++
Sbjct: 218 IGEPGVGKTAVVEGLAQAIVHGDVPETIKDRQIYSLDMGSLVAGSRYRGDFEERLKKVLK 277
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ GD+ILFIDE+HTL+G+G +G+ +D + +LKP L RGELQ I +TT DE+R
Sbjct: 278 EIRTRGDIILFIDEIHTLVGAGAA----EGS-IDAAQMLKPMLARGELQTIGATTNDEYR 332
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQPV + EPS ED + IL GLR++YEAHH T EAI AA L+ RY
Sbjct: 333 KYIEKDAALERRFQPVKVDEPSVEDTIEILKGLRDRYEAHHRVIITDEAIKAAAELADRY 392
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQ 555
ISDR+LPDKAIDLVDEAG+R I ++ PP E+R + + + EV +
Sbjct: 393 ISDRFLPDKAIDLVDEAGARLRIRR-----------MTAPP-----ELRELDEKIAEVRR 436
Query: 556 GSRLKYDDV----VASMGD-TSEIVVESSLPSAS----DDDEPAVVGPDDIAAVASLWSG 606
DD A + D S +V + S + D A V ++IA V ++ +G
Sbjct: 437 NKESAIDDQDFEKAAGLRDEESNLVAQREEKETSWKGGESDSIAEVTEEEIAEVLAMSTG 496
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E++L KRVIGQ+EAV A+S++++R+R GLKDPNRP + +F G
Sbjct: 497 IPVFKLTQTETTKLLKMEDELHKRVIGQEEAVRALSQSIRRTRSGLKDPNRPGGSFIFAG 556
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAK+LA FG
Sbjct: 557 PTGVGKTELAKALAEFLFGD 576
>gi|379716065|ref|YP_005304402.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 316]
gi|387139348|ref|YP_005695327.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|387141325|ref|YP_005697303.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 1/06-A]
gi|389851114|ref|YP_006353349.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 258]
gi|349735826|gb|AEQ07304.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|355393116|gb|AER69781.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 1/06-A]
gi|377654771|gb|AFB73120.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 316]
gi|388248420|gb|AFK17411.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium
pseudotuberculosis 258]
Length = 885
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/617 (40%), Positives = 365/617 (59%), Gaps = 41/617 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARGLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLEAVR 60
Query: 139 EAVVSI-WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I H + +PF+ K+V E ++ G+ +I E
Sbjct: 61 QEVEEIIGHGSE--------------PPVGHIPFTPRAKKVLELSLREGLQMGHKYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
+ LGL +G A +VL ++G D+ + + L G E E + + G + +G
Sbjct: 107 FLLLGLIREGEGVAAQVLVKIGADLPRVRQQVIQLLSGYEGGESPENNESGGEAVGAGTG 166
Query: 258 KTAALKSPG---RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
A + G R+ + L+QF +LT A + +DPV+GRE EI+RI+Q+L RRTKNNP
Sbjct: 167 AARAGRGSGAGDRSNSLVLDQFGRNLTQAAKDGKLDPVVGREKEIERIMQVLSRRTKNNP 226
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA+ IV +VP L K++ SLD+G L+AG++ RG+ E R+ +
Sbjct: 227 VLIGEPGVGKTAVVEGLALDIVNGKVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKV 286
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI + GD+ILFIDE+HTL+G+G +D ++LLKP L RGELQ I +TT DE
Sbjct: 287 LKEINQRGDIILFIDEIHTLVGAGAA-----EGAIDAASLLKPKLARGELQTIGATTLDE 341
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA LS
Sbjct: 342 YRKHIEKDAALERRFQPVNVPEPSVEMTIEILKGLRDRYEAHHRVSITDGALAAAAQLSD 401
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI+DR+LPDKA+DL+DEAG+R I+ + + DD E+R +
Sbjct: 402 RYINDRFLPDKAVDLIDEAGARMRIQRMTAPESIRKV------DDRIAEVRREKEAAIDA 455
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPV 609
Q + A + DT + E + D +E A VG + IA V W+GIPV
Sbjct: 456 QDF-----EKAAGLRDTERKLNEERAEKEKQWRSGDLEEIAEVGEEQIAEVLGNWTGIPV 510
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ++AV A+SRA++R+R GLKDP RP+ + +F GP+G
Sbjct: 511 FKLTEEESSRLLRMEDELHKRIIGQEDAVKAVSRAIRRTRAGLKDPRRPSGSFIFAGPSG 570
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FG
Sbjct: 571 VGKTELSKALANFLFGD 587
>gi|383820312|ref|ZP_09975569.1| chaperone ATPase [Mycobacterium phlei RIVM601174]
gi|383335314|gb|EID13745.1| chaperone ATPase [Mycobacterium phlei RIVM601174]
Length = 843
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 362/613 (59%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKE---------TAEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGEAGNP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGDVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAAALRDKEKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVRAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|418614178|ref|ZP_13177162.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU118]
gi|374821459|gb|EHR85520.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU118]
Length = 817
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/624 (40%), Positives = 352/624 (56%), Gaps = 80/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQEQMGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V K + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPEM 147
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 148 SNKNAQANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV+ EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EP+ ED + IL GL ++YEAHH + EA+ AA LS R
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLCDRYEAHHRINISDEALEAAAKLSDR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHI--------------ELFKRKKEQQTCILSKPPDDYW 541
Y+SDR+LPDKAIDL+DEA S+ + E+ K K E+ + +
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEIDKVKNEKDAAV-------HA 433
Query: 542 QEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
QE + + +Y+D + + L +A + ++IA V
Sbjct: 434 QEFENAANLRDKQSKLEKQYEDAKNEWKN-----AQGGLDTA--------LSEENIAEVI 480
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
+ W+GIP+ +I E L+ LE+ L KRVIGQ++AV +IS+AV+R+R GLKDP RP +
Sbjct: 481 AGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGS 540
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 541 FIFLGPTGVGKTELARALAESMFG 564
>gi|52145135|ref|YP_081693.1| negative regulator of genetic competence clpC/mecB (ATP-dependent
Clp protease) [Bacillus cereus E33L]
gi|51978604|gb|AAU20154.1| negative regulator of genetic competence clpC/mecB (ATP-dependent
Clp protease) [Bacillus cereus E33L]
Length = 811
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/610 (42%), Positives = 363/610 (59%), Gaps = 51/610 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ + + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEVSQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS +++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLDESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEA S+ + + + PP+ E++ + E + +
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSY-----------TTPPNLKELEVKLEEIRKEKDAAVQSQ 435
Query: 561 YDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ AS+ D + + E + E + V +DIA V S W+ IPV ++
Sbjct: 436 EFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANVVSTWTRIPVSKLAQT 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTEL
Sbjct: 496 ETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 555
Query: 676 AKSLAACYFG 685
A++LA FG
Sbjct: 556 ARALAESMFG 565
>gi|322435052|ref|YP_004217264.1| ATPase AAA [Granulicella tundricola MP5ACTX9]
gi|321162779|gb|ADW68484.1| ATPase AAA-2 domain protein [Granulicella tundricola MP5ACTX9]
Length = 821
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 242/619 (39%), Positives = 368/619 (59%), Gaps = 46/619 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLESGITIDKARE 139
+FER+TE+A + + F++ EA G + T+HLLLGL+ ED+ N FL S +++ R+
Sbjct: 1 MFERYTEKARRVIFFARYEASQFGSPYIETEHLLLGLLREDKALTNRFLRSHASVESIRK 60
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ H+T + S++ +P S KRV A E + + I EH+
Sbjct: 61 QIEG--HTTIREKV----------STSVDLPLSNECKRVLAYAAEEAERLSHKHIGTEHL 108
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL + A +L+ G+ R P++ + ++ +
Sbjct: 109 LLGLLREEKCFAAEILQERGL---------------------RLPAIREELQRTTQEKPA 147
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
AA R S L +F DLT A ++ +DP++GR+TE+ R+IQILCRRTKNNP+L+GE
Sbjct: 148 AAAAKAARGEQSMLAEFSRDLTQSAMDQQLDPLVGRDTEVDRVIQILCRRTKNNPVLIGE 207
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA +I EVP FL KR+++LD+ L++AG K RG+ E R+ T++ E+
Sbjct: 208 PGVGKTAIVEGLAQKIADGEVPSFLADKRVLALDLSLIVAGTKYRGQFEERLKTIMKELM 267
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++ + I+FIDE+HTL+G+G+ +G+ LD +N+LKP+L RGE+QCI +TT E+R
Sbjct: 268 ENQNSIVFIDELHTLVGAGSA----EGS-LDAANILKPALSRGEIQCIGATTPAEYRKSI 322
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD++L RRFQ V + P++EDAV+I++G++EKYE H +T +AI +V S+RYI D
Sbjct: 323 EKDRSLERRFQAVKVPPPNEEDAVKIIMGIKEKYEKFHAVSYTDDAIQFSVSHSSRYIPD 382
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEAG+R ++L + ++ + K + A HE + +R
Sbjct: 383 RFLPDKAIDLIDEAGAR--VKLRQTSLPEELTEVQKRIKFIVHRMENAIANHE-FEKARF 439
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERML 619
D+ + + + L DD +V +DI V S W+G+P+ + +E
Sbjct: 440 YSDEERKERENLRALRDKYHL----DDSSAGIVTREDIEDVVSRWTGVPMTSLKEEETER 495
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ +EE+L KRVI QD+A++A++RA++RSR GLK+P RP + LF GPTGVGKTE+A++L
Sbjct: 496 LLRVEEELHKRVISQDKAISALARAIRRSRAGLKNPARPIGSFLFLGPTGVGKTEMARTL 555
Query: 680 AACYFGSVRIHYLFFPSPF 698
A FGS + F S F
Sbjct: 556 AQFLFGSEKSLIRFDMSEF 574
>gi|229027929|ref|ZP_04184082.1| Negative regulator of genetic competence [Bacillus cereus AH1271]
gi|228733317|gb|EEL84146.1| Negative regulator of genetic competence [Bacillus cereus AH1271]
Length = 811
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 262/624 (41%), Positives = 363/624 (58%), Gaps = 79/624 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + SQ EA +G + + T+H+LLGL+ E GI A +A
Sbjct: 2 MFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREG--------EGI----AAKA 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++++ S + A G+ ++ + ++ K+V E +++ +R G++++ EHI
Sbjct: 50 LIALGLSPEKVQKEVEALIGRGTEASQTVHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N + L A G + G +
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQ------------GGSST 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P L+ DLT A E +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 158 NANTP------TLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEP 211
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +IV EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 212 GVGKTAIAEGLAQQIVNNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 271
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 272 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EPS +++ +IL GLR++YEAHH T +AI+AAV LS RYI+DR
Sbjct: 327 KDAALERRFQPIHVDEPSLDESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKR--------------KKEQQTCILSKPPDDYWQEIRT 546
+LPDKAIDL+DEA S+ + + +KE+ + S QE
Sbjct: 387 FLPDKAIDLIDEAASKVRLRSYTTPPNLKELELKLEEIRKEKDAAVQS-------QEFEK 439
Query: 547 VQAMHEVVQGSRLKYDDVVASM-----GDTSEIVVESSLPSASDDDEPAVVGPDDIAAVA 601
++ ++ Q R K +D + SE+ VE DIA V
Sbjct: 440 AASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVE------------------DIANVV 481
Query: 602 SLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661
S W+ IPV ++ E L+ LE L RVIGQDEAV A+++AV+R+R GLKDP RP +
Sbjct: 482 STWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGS 541
Query: 662 MLFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELA++LA FG
Sbjct: 542 FIFLGPTGVGKTELARALAESMFG 565
>gi|220911112|ref|YP_002486421.1| ATPase AAA [Arthrobacter chlorophenolicus A6]
gi|219857990|gb|ACL38332.1| ATPase AAA-2 domain protein [Arthrobacter chlorophenolicus A6]
Length = 830
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/621 (41%), Positives = 371/621 (59%), Gaps = 66/621 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES I++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLSISLDGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE + G E + +G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETTGAGVGGGQPEGAPAGS 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L+QF +LT A E +DPVIGRE E++R++Q+L RRTKNNP+L+G
Sbjct: 168 VV------------LDQFGRNLTQAARENKLDPVIGREQEMERVMQVLSRRTKNNPVLIG 215
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP + K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 216 EPGVGKTAVVEGLAQAIVRGDVPETIKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 275
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 276 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKH 330
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS A+ IL GLR++YEAHH T A+ +A L+ RYIS
Sbjct: 331 IEKDAALERRFQPIQVKEPSVAHAIEILKGLRDRYEAHHRVTITDGALASAASLAERYIS 390
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PP+ ++AM E + +
Sbjct: 391 DRFLPDKAIDLIDEAGARLRIRR-----------MTAPPE--------LKAMDERIAKLK 431
Query: 559 LKYDDVV--------ASMGDTSEIVV------ESSLPSASDDDEPAVVGPDDIAAVASLW 604
++ + + A++ D + ++ E S DD + V D IA V +
Sbjct: 432 MEKESAIDAQDFEGAAALRDKEQKMISERSEKERHWKSGGMDD-ISEVDEDLIAEVLANS 490
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+GIPV ++T +E L+ +E++L KRV+GQDEA+ A+S+A++R+R GLKDP RP + +F
Sbjct: 491 TGIPVFKLTEEESSRLLKMEDELHKRVVGQDEAIKALSQAIRRTRAGLKDPKRPGGSFIF 550
Query: 665 CGPTGVGKTELAKSLAACYFG 685
GPTGVGKTELAK+LA FG
Sbjct: 551 AGPTGVGKTELAKALAEFLFG 571
>gi|334338866|ref|YP_004543846.1| ATPase AAA-2 domain-containing protein [Desulfotomaculum ruminis
DSM 2154]
gi|334090220|gb|AEG58560.1| ATPase AAA-2 domain protein [Desulfotomaculum ruminis DSM 2154]
Length = 815
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/613 (41%), Positives = 366/613 (59%), Gaps = 51/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTE A +I +Q EA+ L ++ T+H+LLGLI ED+ + GI+ D+
Sbjct: 1 MFHRFTESAKNVLILAQEEARRLKYPLIGTEHILLGLIREDQGFAARALEQMGISADRVA 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+AV + + Q P A++P + KRV E AVE +RS +N++ EH
Sbjct: 61 QAVEQVVGVGD---------QAVP----AEIPATARAKRVLELAVEEARSLNHNYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL LG D+ E A++ + G
Sbjct: 108 ILLGLIREGEGVAAQVLISLGADM-------------ERARQQVISMMGGSPGGGQPQGG 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
G + +L+QF DLT+ A E+ +DPV+GR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 155 PGHHCPSGGCKTVSLDQFSRDLTSLAKEDKLDPVVGRGKEIERVIQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA +I++ VP LL++R+++LD+ ++AG K RGE E R+ ++ EI
Sbjct: 215 EPGVGKTAIAEGLAQKIIEGSVPEILLNRRVVTLDLAGMVAGTKYRGEFEDRLKKVMEEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++I+FIDE+HTLIG+G +D +N+LKP+L RGE+Q I +TT DE+R
Sbjct: 275 RQAGNIIVFIDELHTLIGAGAA-----EGAIDAANILKPALARGEIQTIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E+ ++IL G+R+KYEAHH T EA+ AA LS RYI+
Sbjct: 330 IEKDSALERRFQPIQVDEPTVEETIQILKGIRDKYEAHHRVNITNEALEAAARLSDRYIT 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DE+ SR I+ F + PPD +E V+ E
Sbjct: 390 DRFLPDKAIDLIDESASRVRIKAF-----------TTPPDLKDKEKLLVEVRKEKEAAIN 438
Query: 559 LKYDDVVASMGDTSEIVV------ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + A + D + + S A D +V +DIA + + W+G+PV+++
Sbjct: 439 NQEFEKAAELRDREQKLTLQLNQARESWNQAKGGD-GLIVSEEDIAHIVAAWTGVPVKKL 497
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ LEE L +RVIGQDEAV A++RAV+R+R GLKDP RP + +F GPTGVGK
Sbjct: 498 AQEESQRLLNLEEALHQRVIGQDEAVKAVARAVRRARAGLKDPKRPVGSFIFLGPTGVGK 557
Query: 673 TELAKSLAACYFG 685
TELA++LA FG
Sbjct: 558 TELARALAEALFG 570
>gi|18311423|ref|NP_563357.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens str. 13]
gi|18146107|dbj|BAB82147.1| ClpC adenosine triphosphatase [Clostridium perfringens str. 13]
Length = 814
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 253/613 (41%), Positives = 367/613 (59%), Gaps = 52/613 (8%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKD-MVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ F E + K VI +E+ + K + T+HLL+GLI E+ + LE ++ +
Sbjct: 3 LDNFNENS-KIVINKGKESSLMLKHGYMGTEHLLIGLINENGQCSKILEESNVTEEKVLS 61
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ G+ S ++PF+ K++ + +VE ++ G++ PEHI
Sbjct: 62 FIKLY-----------VGIGEVNYSLDEVPFTPRCKKILDRSVEIAKEYGHSISRPEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRL-GVDVNHLAAVAVSRLQGELAKEGREPSL-AKGVRENSISGK 258
L L +G A +L ++ D+ +++ +L L GR PS +K ++E
Sbjct: 111 LALIKEREGVANLILTKIVKNDIKNIS----DKLNNIL---GRIPSKESKSLKEK----- 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ P R L + ++L RA + +DPVIGR+ E QR+++ILCRR KNNP L+G
Sbjct: 159 ----EKPKRKDTPTLNLYGINLIERADKNKLDPVIGRKDETQRLLEILCRRMKNNPCLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA RI+ EVP + KRI +LD+ ++AGAK RGE E R+ +++E+
Sbjct: 215 EPGVGKTAVVEGLAQRILLGEVPDIIKDKRIFTLDVTSMLAGAKYRGEFEERLKKVLNEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ S D+ILFIDE+H ++G+G G +G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 275 KDSDDIILFIDEMHNIVGAG----GAEG-AIDASNILKPALARGEIQCIGATTTDEYRKN 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EPS+ED+V IL GLREKYE HHN K T EAI AAV+LS+RYI+
Sbjct: 330 IEKDSALERRFQPVVVKEPSKEDSVLILKGLREKYEVHHNVKLTDEAIEAAVNLSSRYIT 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA ++ IE + I+ PP + QE E + +
Sbjct: 390 DRFLPDKAIDLIDEAAAKVRIE---------SMIV--PPRLFKQEELIANLKVEKEEAIK 438
Query: 559 LKYDDVVASMGDTSEIVV-----ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
L+ ++ A + D ++ + L + ++ V + IA V S W+ IPV+++T
Sbjct: 439 LQDFELAAKLRDEELMLQEELERDKELWREENYNKIYEVNKEHIAKVVSKWTQIPVERLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE+L KRVIGQ EA+ IS+AV+RSRVGLKDP RP + F GPTGVGKT
Sbjct: 499 EKESSRLLKLEEKLSKRVIGQLEAIRTISKAVRRSRVGLKDPKRPIGSFAFLGPTGVGKT 558
Query: 674 ELAKSLAACYFGS 686
EL K+LA FG
Sbjct: 559 ELCKALAEAMFGD 571
>gi|345858493|ref|ZP_08810886.1| negative regulator of genetic competence clpC/mecB
[Desulfosporosinus sp. OT]
gi|344328512|gb|EGW39897.1| negative regulator of genetic competence clpC/mecB
[Desulfosporosinus sp. OT]
Length = 813
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 264/610 (43%), Positives = 365/610 (59%), Gaps = 50/610 (8%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAV 141
R+TERA K + + EAK +G +V T+H+LLGLI E G+ +DK R V
Sbjct: 4 RYTERAEKVLTIAHSEAKRMGHQVVGTEHILLGLIQEGEGIAAQALTGMGLDLDKIRGQV 63
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
I A G+PF+ ++ + KRV E A E + + N+I EH+ L
Sbjct: 64 EQI------------AGVGQPFN--GEVGLTPRVKRVLELANEETHRQDVNYIGTEHLLL 109
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL +G A R+L L V + V L GEL E P+ N IS +
Sbjct: 110 GLIMEGEGIAARILANLNVSPEKVWKQVVKLLGGEL-DESAIPA------PNPIS----S 158
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
K+ G AL +F DLT +A E +DPVIGRE EI+R+IQ+L RRTKNNP L+GE G
Sbjct: 159 TKNAGPANTPALNEFGRDLTVQAREARLDPVIGREKEIERVIQVLSRRTKNNPALIGEPG 218
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA I+ +VP LL+KR+++LD+ ++AG+K RGE E R+ ++ EI+
Sbjct: 219 VGKTAIAEGLAQSIIGNKVPEILLNKRVITLDLSAMVAGSKYRGEFEERLKKVMEEIRAD 278
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G++ILFIDE+HTLIG+G +D +N+LKP+L RGELQCI +TT +E+R EK
Sbjct: 279 GNIILFIDELHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLEEYRKYIEK 333
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQP+ + EP+ E+A+RIL GL ++YEAHH K T EAI AA LS RYISDR+
Sbjct: 334 DSALERRFQPITVDEPTVEEAIRILHGLCDRYEAHHRVKITDEAIEAAARLSDRYISDRF 393
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYW--QEIRTVQAMHEVVQGSRL 559
LPDKAIDL+DEA SR + F + PPD +E ++ E S+
Sbjct: 394 LPDKAIDLMDEAASRVRLASF-----------TAPPDLKLLEEEAERLKKEKEAAVSSQ- 441
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDD----EPAVVGPDDIAAVASLWSGIPVQQITAD 615
+++ ++ VE + + ++ E A V DDIA + + W+GIPV+++ +
Sbjct: 442 EFEKAAQIRDQEHKLRVELAGQREAWENLRYKESAQVTADDIAQIVASWTGIPVKKLAQE 501
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LEE L +R+IGQ++AV A++RAV+R+R GL+DP RP + +F GPTGVGKTEL
Sbjct: 502 ESERLLHLEEILHQRLIGQEDAVTAVARAVRRARAGLRDPKRPIGSFIFLGPTGVGKTEL 561
Query: 676 AKSLAACYFG 685
++LA FG
Sbjct: 562 GRALAEAMFG 571
>gi|427405952|ref|ZP_18896157.1| hypothetical protein HMPREF9161_00517 [Selenomonas sp. F0473]
gi|425708793|gb|EKU71832.1| hypothetical protein HMPREF9161_00517 [Selenomonas sp. F0473]
Length = 834
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 262/617 (42%), Positives = 356/617 (57%), Gaps = 66/617 (10%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSI 144
FT+ A+KAV FSQ A+ GK + T LLLG++ R+ + +
Sbjct: 7 FTQSAIKAVEFSQYIAQRRGKGYIGTGQLLLGIL-----------------HMRDTIAAD 49
Query: 145 WHSTNNQDTDDA-----AAQGKPFSSAA--KMPF-SISTKRVFEAAVEYSRSRGYNFIAP 196
S N D D A A G A ++P+ + +RV + A++ +R +F+
Sbjct: 50 VLSRNGVDYDGAEQVIRGADGFQDVRIANDEVPYYTRRAQRVMQGAIDTAREE-RSFVTT 108
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EHI L L T +G+A R L+ VD+ L R+ EP KG S
Sbjct: 109 EHILLSLLTEAEGTAVRTLEEFDVDIEELQGEVFDRMN----TAAEEP---KGKSARKKS 161
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
GK+ P +L+++ DL A A IDPVIGRETEI R+IQIL RRTKNNP+L
Sbjct: 162 GKSEKQGLP-----VSLKKYARDLVALARSGGIDPVIGRETEIDRLIQILARRTKNNPLL 216
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
LGE+GVGKTA+AEGLA RI EVP L +KRI+SL M L+AG K RGE E R+ ++
Sbjct: 217 LGEAGVGKTAVAEGLAQRIADGEVPFLLENKRIVSLSMTALVAGTKYRGEFEERLKNVVD 276
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
++ KS D+ILFIDE+HTLI +G G +G+ LD +N+LKP+L RGE+Q I +TTQ E++
Sbjct: 277 DVIKSKDLILFIDEIHTLIRTG----GAEGS-LDAANILKPALARGEMQIIGATTQTEYK 331
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
F KD ALARRFQ V + EP + DA +IL GLR+KYE H+ + A+ AAVHLS RY
Sbjct: 332 KHFAKDSALARRFQTVTVGEPDEADAEKILFGLRDKYEEFHHARIEDAAVTAAVHLSKRY 391
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIE-------LFKRKKEQQTCILSKPPDDYWQEIRTVQA 549
I+DRYLPDKAIDL+DEA SR ++ L + E + K Q+
Sbjct: 392 ITDRYLPDKAIDLMDEAASRVRMKHIGTSDALSSLRNEIAGLVKEKDIAISGQDYEEAAR 451
Query: 550 MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ + Q R++ + + GD ++ +V DDIA V + W+GIPV
Sbjct: 452 LRDREQELRVQLE--ASRRGDEQRTLI--------------LVAEDDIAGVVAQWTGIPV 495
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
Q+I A E L+ LE+ + +RVIGQDEA+ A+S+AV+R+R G+KDP RP + LF G TG
Sbjct: 496 QRIAAKESDRLLALEKTIGRRVIGQDEAIRAVSKAVRRARAGVKDPRRPIGSFLFLGSTG 555
Query: 670 VGKTELAKSLAACYFGS 686
VGKTELA++LA FG+
Sbjct: 556 VGKTELARALAESVFGT 572
>gi|319891481|ref|YP_004148356.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB
[Staphylococcus pseudintermedius HKU10-03]
gi|386320177|ref|YP_006016340.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
pseudintermedius ED99]
gi|317161177|gb|ADV04720.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB
[Staphylococcus pseudintermedius HKU10-03]
gi|323465348|gb|ADX77501.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
pseudintermedius ED99]
Length = 819
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 258/622 (41%), Positives = 356/622 (57%), Gaps = 76/622 (12%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFDITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + G + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLI--------------GHGQEQMGALHYTPRAKKVIELSMDEARKLQHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L D+N +++ + ++ K P ++ +++
Sbjct: 105 TEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMSNKNAQSAK 156
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S T L R DLT A + +DPV+GR +EI R+I++L RRTKNNP+
Sbjct: 157 SNNTPTLDGLAR-----------DLTVIARDGTLDPVVGRNSEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI +G+VILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHHAGNVILFIDEMHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV ++EPS D + IL GLR++YEAHH + EA+ AA LS R
Sbjct: 321 RKHIEKDAALERRFQPVQVNEPSVADTIAILKGLRDRYEAHHRINISDEAVEAAAKLSDR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQ 548
Y+ DR+LPDKAIDL+DEA S+ ++ ++ EQQ + K D + QE
Sbjct: 381 YVQDRFLPDKAIDLIDEASSKVRLKSHTTPTNLKEIEQQIEQVKKEKDAAVHAQEFENAA 440
Query: 549 AMHEVVQGSRLKYDDVVASM-----GDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASL 603
+ + +Y++ G + +V E DIA V +
Sbjct: 441 NLRDKQTKLEKQYEEAKNEWQNHQGGQHTTLVAE------------------DIAEVIAG 482
Query: 604 WSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAML 663
W+GIP+ ++ E L+ LE+ L +RVIGQ++AV AIS+AV+R+R GLKDP RP + +
Sbjct: 483 WTGIPLTRLNETESERLLNLEDTLHERVIGQNDAVIAISKAVRRARAGLKDPKRPIGSFI 542
Query: 664 FCGPTGVGKTELAKSLAACYFG 685
F GPTGVGKTELA++LA FG
Sbjct: 543 FLGPTGVGKTELARALAEAMFG 564
>gi|295106036|emb|CBL03579.1| ATPases with chaperone activity, ATP-binding subunit [Gordonibacter
pamelaeae 7-10-1-b]
Length = 854
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 251/613 (40%), Positives = 368/613 (60%), Gaps = 54/613 (8%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKARE 139
FE+FT++A K ++ +Q EA+SL + V T+H+LLGLI E G+ D +
Sbjct: 3 FEKFTDKARKVLVLAQDEARSLHQPYVGTEHILLGLIQEKDGLAAQALDRKGVKYDAVVQ 62
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
A+ + ++DTD + + F+ KRV E ++ + G ++I+ EH+
Sbjct: 63 AIRQVV--AIDEDTD----------VSGHLSFTPRVKRVLENSLREAMQMGQSYISTEHL 110
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LG+ DG+A VL RLGV + + + A++ L G+ + +
Sbjct: 111 LLGIVREGDGTALEVLTRLGVSGDDIRS-ALNDLVGQ----------------SPVYAGR 153
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A G+ S L++F DLT +A + +DPVIGR EI+R++Q+L RR KNNP+L+GE
Sbjct: 154 NAFDPQGQGSDSVLKEFGTDLTQKARDGKLDPVIGRAGEIERVMQVLSRRQKNNPLLIGE 213
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTA+AEGLA IV +VP L KR+ +LD+ L+AG+K RGE E R+ I E+
Sbjct: 214 PGVGKTAVAEGLAQLIVSNQVPDILRDKRLFTLDVSALVAGSKYRGEFEERLKKCIKEVM 273
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
+GD+ILFIDE+HTLIG+G+ +G+ +D + +LKP L RGE+Q I +TT DE+R
Sbjct: 274 DAGDIILFIDEMHTLIGAGSA----EGS-IDAAAILKPPLSRGEIQVIGATTIDEYRKHL 328
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ + EP++E A+RI+ GLR++YEAHH FT EA+ AAV L+ RYI D
Sbjct: 329 EKDSALERRFQPITVGEPNEEQALRIMEGLRDRYEAHHQVHFTDEALQAAVTLADRYIQD 388
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAID++DEAG+R I + L K D +E+R ++A + G+
Sbjct: 389 RFLPDKAIDVLDEAGARMRI---------RNMTLPKELRDLDEELRKLRAEKD---GAIA 436
Query: 560 KYD-DVVASMGDTSEIVVESSLPSASDDDEPA-----VVGPDDIAAVASLWSGIPVQQIT 613
D + A + D + + + + D +E A V +DIA V S+ +G+PV +T
Sbjct: 437 AQDFERAAQLRDEEAQLKDKRVQAEKDWEENAQKTIQQVTVEDIADVVSMTTGVPVSNLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E L +RV+GQ+EAV A+S+A++RSR GLKDP RP + +F GP+GVGKT
Sbjct: 497 EAETEKLLRMESVLHERVVGQEEAVTALSKAIRRSRSGLKDPKRPAGSFIFLGPSGVGKT 556
Query: 674 ELAKSLAACYFGS 686
EL+K+LA F S
Sbjct: 557 ELSKALAEFLFNS 569
>gi|347543096|ref|YP_004857734.1| negative regulator of genetic competence ClpC/mecB [Candidatus
Arthromitus sp. SFB-rat-Yit]
gi|346986133|dbj|BAK81808.1| negative regulator of genetic competence ClpC/mecB [Candidatus
Arthromitus sp. SFB-rat-Yit]
Length = 812
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 240/612 (39%), Positives = 367/612 (59%), Gaps = 50/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FE+ TERA K + +S +A LG + T+H+LLGL+ ED L S
Sbjct: 1 MFEKLTERARKVISYSGDDALKLGHGFIGTEHILLGLLREDGPAQKILNS---------- 50
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+++ ++ + G+ +++P + TK+V E++++ ++ G+N ++PEHI
Sbjct: 51 -FDVYYDDIFKEIRTILSPGEIEIKNSEIPLTPRTKKVIESSIDEAKKLGHNHVSPEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L + DG A ++L + GV + + ++ L + + + P + +N
Sbjct: 110 LSIINETDGVAYKILDKKGVSIVKIWNQTINALN--VTIDIQNPHEKEQQLKN------- 160
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L +P L+Q DLT A+E +DPVIGR+ E QR+++ILCRR KNNP L+G+
Sbjct: 161 -LPTP------VLDQHGRDLTKLANEGKLDPVIGRDIETQRVLEILCRRIKNNPCLIGDP 213
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAI EGLA +I + +P L +KR+++LD+ L+AG K RGE E R+ ++ EI+K
Sbjct: 214 GVGKTAIIEGLAQKITEGNIPEILKNKRVVTLDLSSLIAGTKYRGEFEERLKKIMEEIKK 273
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
S ++ILFIDE+HT+IG+G G +G +D SN+LKP+L RGE+QCI +TT DE+R E
Sbjct: 274 SKNIILFIDEIHTIIGAG----GAEG-AIDASNILKPALARGEIQCIGATTIDEYRKYIE 328
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP++++ + IL+G+R+KYE HH K T EAI AV LS R+I DR
Sbjct: 329 KDTALERRFQPIFVGEPNEDETIDILMGIRDKYETHHKVKITDEAIRFAVSLSVRFIPDR 388
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
YLPDKAIDL+DEA ++ + L+ P + E + E + L+
Sbjct: 389 YLPDKAIDLIDEAAAKIRVRN-----------LTVPIEVKEIEEEIAKVGKEKQEAITLE 437
Query: 561 YDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ AS+ D + + E L ++ + D+ ++ ++A+V + W+ IPV+++T
Sbjct: 438 DFEKAASLRDKEQKLKE-RLENSKEKWKVEKYDKEFILTEQELASVVASWTKIPVEKLTQ 496
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ LEE LK RVI Q+EAV ++++AVKR RVG+KDP RP + +F GPTGVGKTE
Sbjct: 497 TESEKLLKLEEMLKNRVIDQNEAVTSVAKAVKRGRVGIKDPKRPIGSFIFLGPTGVGKTE 556
Query: 675 LAKSLAACYFGS 686
L K+L+ FGS
Sbjct: 557 LCKALSDIVFGS 568
>gi|331702088|ref|YP_004399047.1| ATPase AAA-2 domain-containing protein [Lactobacillus buchneri NRRL
B-30929]
gi|329129431|gb|AEB73984.1| ATPase AAA-2 domain protein [Lactobacillus buchneri NRRL B-30929]
Length = 830
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 243/608 (39%), Positives = 353/608 (58%), Gaps = 41/608 (6%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSI 144
FT A + +Q +AK + T+HLLLGL+ E +GI ++ V+
Sbjct: 5 FTPSAKNVLTIAQEQAKKFKHQAIGTEHLLLGLLIE--------TNGIAYKALQQFSVTA 56
Query: 145 WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLF 204
T + K SS +P+S K V A E+++ G + EHI L L
Sbjct: 57 EDVTEEVERFAGYGNLKDLSSNDYLPYSPKAKEVLAQAGEFAKKNGVPKVGTEHILLSLL 116
Query: 205 TVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKG-VRENSISGKTAALK 263
T + + R+L LG+D++ + V + R+ ++ G + N S + +
Sbjct: 117 TDETILSSRILINLGLDLSQIRKVTL-----------RKMGISGGSMASNLASKQRGRQQ 165
Query: 264 SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323
P ++ ++ DLT A ++ +DP +GR+ E++R+IQIL RRTKNNP+L+GE GVG
Sbjct: 166 KPADSKTPTIDSLARDLTEMARQDRLDPTVGRDLEVKRVIQILARRTKNNPVLIGEPGVG 225
Query: 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGD 383
KTAIAEGLA RIV +VP + KR+M LDMG L+AG K RGE E R+ +I EI + G+
Sbjct: 226 KTAIAEGLAERIVSGDVPGDMSKKRLMMLDMGSLVAGTKYRGEFEDRLKKVIDEIYQDGN 285
Query: 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDK 443
+ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQ I +TT DE++ E D
Sbjct: 286 IILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQLIGATTLDEYQKYIESDA 340
Query: 444 ALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503
AL RRF V++ EP+ ++ V IL GLR KYE HH+ + T +AI AV+LS RYISDR+LP
Sbjct: 341 ALERRFAKVMVDEPTTDETVEILKGLRPKYEQHHHVEITDDAIETAVNLSNRYISDRFLP 400
Query: 504 DKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK--- 560
DKAIDL+DEA ++ I+ ++ K D E+ + + ++++
Sbjct: 401 DKAIDLMDEAAAKVRIDHLQK---SDAVDDHKKLSDLLSELNEALVAQDYEKAAKIRKQT 457
Query: 561 --YDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
D +A D+ E + D P P D+A + W+GIPV ++++ E
Sbjct: 458 NQLQDELAQDNDSEE--------GSEDAHYPVKETPQDVAEIVGEWTGIPVTRLSSTEAD 509
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
LV LE+ L KRV+GQ+EA++A+SR+++R+R GLKDPNRP + +F GPTGVGKTELAK+
Sbjct: 510 RLVNLEKILHKRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKA 569
Query: 679 LAACYFGS 686
+A FGS
Sbjct: 570 VAEAVFGS 577
>gi|383782938|ref|YP_005467505.1| putative ATPase associated with various cellular activities
[Actinoplanes missouriensis 431]
gi|381376171|dbj|BAL92989.1| putative ATPase associated with various cellular activities
[Actinoplanes missouriensis 431]
Length = 840
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 258/617 (41%), Positives = 366/617 (59%), Gaps = 58/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE A G S S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEPAAAGAATGEAAPSTS-- 165
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 166 ------------LVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGL+ IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLSQSIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVGEPSLAHTIEILKGLRDRYEAHHRISITDAALVAAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R I ++ PPD D+ + I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLRDFDERIAQVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D A + D + ++ A D D + V + IA V W+GIPV
Sbjct: 434 SAIDAQDFERAAQLRDKEKTLLNQKAQREKEWKAGDLDVVSEVDDEQIAEVLGNWTGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+G
Sbjct: 494 YKLTEEETSRLLRMEDELHKRVIGQEDAVQAVSKAIRRTRAGLKDPKRPSGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FGS
Sbjct: 554 VGKTELSKALAEFLFGS 570
>gi|297570833|ref|YP_003696607.1| ATPase AAA [Arcanobacterium haemolyticum DSM 20595]
gi|296931180|gb|ADH91988.1| ATPase AAA-2 domain protein [Arcanobacterium haemolyticum DSM
20595]
Length = 873
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 255/616 (41%), Positives = 358/616 (58%), Gaps = 55/616 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+H+LLGLI E LE+ G++ D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARNLKHNYLGTEHILLGLIKEGEGVAAKALEALGVSFDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ VV I Q + +PF+ K+V E A+ G+++I EH
Sbjct: 61 DQVVEIIGEGQEQ-------------PSGHIPFTPRAKKVLEYAMREGLQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL +L D+ + L G KE RE +G
Sbjct: 108 LLLGLCREQEGVAAQVLVKLDADLPKVRQQVTQLLSGYQGKEAVGVGGGG-PREGVKAGS 166
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T L+QF +LT A E +DPVIGR E QR++Q+L RR KNNP+L+G
Sbjct: 167 TI------------LDQFGRNLTQSARENKLDPVIGRHMETQRVMQVLSRRNKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA I +VP L K++ SLDMG L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQAIAHGDVPETLKDKQLYSLDMGSLVAGSRYRGDFEERMKKILKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD++LFIDE+HTL+G+G LD ++LLKP + RGELQ I +TT DE+R
Sbjct: 275 NTRGDIVLFIDEIHTLVGAGAA-----EGALDAASLLKPMMARGELQVIGATTLDEYRKH 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + +PS ++ + IL GLR++YEA H T EA+ AA ++ RYI+
Sbjct: 330 IEKDAALERRFQPIQVEQPSVKETIAILEGLRDRYEAFHRVTITDEALEAAATMADRYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQ 555
DR+LPDKAIDL+DEAG+R I RK ++ PP+ + +EI V+ E +
Sbjct: 390 DRFLPDKAIDLIDEAGARLAI----RK-------MTAPPELRELDEEIADVKRQKEAAID 438
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
G + A++ D + + E D D AVV D I+ V S+ +GIPV
Sbjct: 439 GQDFEK---AAALRDQEQQLTEKRAERDKAWREGDLDVVAVVDEDLISEVLSMATGIPVF 495
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T E L+ +EE+L KRVIGQ EAV A+S+A++R+R GLKDPNRP + +F GPTGV
Sbjct: 496 KLTEAESAKLLRMEEELHKRVIGQSEAVTALSQAIRRTRAGLKDPNRPGGSFIFAGPTGV 555
Query: 671 GKTELAKSLAACYFGS 686
GKTELAK+LA FG
Sbjct: 556 GKTELAKALAEFLFGD 571
>gi|404416854|ref|ZP_10998667.1| stress response-related Clp ATPase [Staphylococcus arlettae CVD059]
gi|403490742|gb|EJY96274.1| stress response-related Clp ATPase [Staphylococcus arlettae CVD059]
Length = 824
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 256/612 (41%), Positives = 355/612 (58%), Gaps = 55/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F R TERA + + +Q EA L + T+HLLLGL+ E P G A +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGI---------AAKV 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ S + + G + ++ K+V E +++ +R +NF+ EHI
Sbjct: 50 LESFEITEEKVVEEVEKLIGHGQEQMGALHYTPRAKKVIELSMDEARKLHHNFVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL ++G A RV L D+N +++ + ++ K P + + + S T
Sbjct: 110 LGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMNNKNAQANKSNNTP 161
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT-KNNPILLGE 319
L S R DLT A + +DPVIGR+ EI R+I++L RRT KNNP+L+GE
Sbjct: 162 TLDSLAR-----------DLTVIAKDGTLDPVIGRDQEITRVIEVLSRRTTKNNPVLIGE 210
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA IV EVP L +KR+MSLDMG ++AG K RGE E R+ ++ EI
Sbjct: 211 PGVGKTAIAEGLAQAIVNNEVPETLKNKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIH 270
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++G+V+LFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 271 QAGNVVLFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKNI 325
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPV + EP+ ED V IL GLR++YEAHH + +A+ AAV LS RY+SD
Sbjct: 326 EKDAALERRFQPVQVDEPTVEDTVEILKGLRDRYEAHHRINISDQAVEAAVQLSNRYVSD 385
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEA S+ R K T PP+ E Q +E
Sbjct: 386 RFLPDKAIDLIDEASSKV------RLKSHTT-----PPNLKEIEQHIEQVKNEKDAAVHA 434
Query: 560 KYDDVVASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D + +E A++ + E + +DIA V + W+GIP+ +I
Sbjct: 435 QEFENAANLRD-KQTKLEKQYEEATNNWKNAQNGENTALSEEDIAEVIAGWTGIPLTKIN 493
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LE+ L RVIGQ EAV +IS+AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 494 ETESQRLLNLEDTLHDRVIGQKEAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 553
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 554 ELARALAESMFG 565
>gi|170780568|ref|YP_001708900.1| Clp family ATP-binding protease [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155136|emb|CAQ00236.1| putative Clp-family ATP-binding protease [Clavibacter michiganensis
subsp. sepedonicus]
Length = 836
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 257/615 (41%), Positives = 366/615 (59%), Gaps = 58/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEAKMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I Q T +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQDIIGQGQQQPT-------------GHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE ++ G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEA-----------VAVGGE 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ G T L+QF +LT A + +DPVIGRE EI+R++QIL RR+KNNP+L+G
Sbjct: 157 AQQSQQAGST---VLDQFGRNLTQAARDGKLDPVIGREKEIERVMQILSRRSKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP L K++ +LD+G L+AG++ RG+ E R+ + EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGDVPETLKDKQLYTLDLGSLIAGSRYRGDFEERLKKVTKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+I FIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIITFIDEIHTLVGAGAA----EGA-IDAASILKPLLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
FEKD AL RRFQP+ + EPS + IL GLR++YEA H T AI +A +L+ RYI+
Sbjct: 329 FEKDAALERRFQPIQVQEPSLPHTINILKGLRDRYEAFHKVSITDGAIVSAANLADRYIA 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R + ILS PP+ ++ + I TV+ E
Sbjct: 389 DRFLPDKAIDLIDEAGARLRL-----------SILSAPPELREFDERISTVRVAKETA-- 435
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
++ D AS+ D + ++ L + D A V IA V + +GIPV
Sbjct: 436 --IEDQDFEKAASLRDEEKNLLGERLRLEKQWRSGDVRTTAEVDEGLIAEVLAQATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E LV +E+ L +RVIGQ+EA++A+S+ ++R+R GLKDP RP+ + +F GPTG
Sbjct: 494 FKLTEEESSRLVFMEKALHQRVIGQEEAISALSKTIRRTRAGLKDPRRPSGSFIFAGPTG 553
Query: 670 VGKTELAKSLAACYF 684
VGKTELAK+LA F
Sbjct: 554 VGKTELAKALAEFLF 568
>gi|328956590|ref|YP_004373976.1| class III stress response-like ATPase, AAA+ superfamily
[Carnobacterium sp. 17-4]
gi|328672914|gb|AEB28960.1| class III stress response-like ATPase, AAA+ superfamily
[Carnobacterium sp. 17-4]
Length = 830
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 251/625 (40%), Positives = 361/625 (57%), Gaps = 37/625 (5%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVV 142
E F+E+A +I +Q EAK V T+H+LLGLI E + GI R+ V
Sbjct: 3 ELFSEKARMVLIMAQEEAKGFRHHSVGTEHILLGLIME--------QDGIAGKTLRQFSV 54
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
+ + K S A +P+S K+ A + +R G + EH+ LG
Sbjct: 55 TEMDIREEIEHFTGYGTMKYLSKNAILPYSPRAKQAITFATDEARRMGSALVGTEHLLLG 114
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
L +D + ++L L +++N + + ++ L+ K AA
Sbjct: 115 LLREEDILSSKILNNLDINLNKARQIVLKKI-----------GLSDVTNGKGRKAKPAAK 163
Query: 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322
+ G L+ DLTA A E +DPV+GR EIQRIIQ+L RRTKNNP+L+GE GV
Sbjct: 164 QVAG---TPTLDSLARDLTAVAREGKLDPVVGRHKEIQRIIQVLSRRTKNNPVLVGEPGV 220
Query: 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG 382
GKTAIAEGLA +I+ EVP L +KR+M LDMG L+AG K RGE E R+ +I EI + G
Sbjct: 221 GKTAIAEGLAQKIIDGEVPAALANKRLMMLDMGSLVAGTKYRGEFEERMKKVIDEIYQDG 280
Query: 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD 442
+V+LFIDE+HTLIG+G G +G +D SN+LKP+L RGELQ I +TT DE++ EKD
Sbjct: 281 EVVLFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQTIGATTLDEYQKYIEKD 335
Query: 443 KALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502
AL RRF P+ + PS+E+A ILLGLR +YE HH + T EA++AAV S+RYI R L
Sbjct: 336 AALERRFAPIHVDAPSEEEAEEILLGLRSRYEEHHGVEITDEAVHAAVKYSSRYIMSRQL 395
Query: 503 PDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYD 562
PDKAIDL+DE+ S+ +++ + + + QE + + + ++++
Sbjct: 396 PDKAIDLIDESASKVRLDVSSKPSPVAAAVTD--LEGLIQEKEEAIQLQDFEKAAKIRSK 453
Query: 563 DVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVG 622
+ + ++ + +AS+ + V DIA V +LW+GIP+QQ+ E L+
Sbjct: 454 E-MKQRKKIESLIQKQEGKAASNSLQ---VTERDIAEVVALWTGIPIQQMEQKESDRLMN 509
Query: 623 LEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAAC 682
LE+ L KRVIGQ++AV ++SRA++RSR GLKDPNRP + +F GPTGVGKTELAK+LA
Sbjct: 510 LEKVLHKRVIGQEKAVGSVSRAIRRSRSGLKDPNRPIGSFMFLGPTGVGKTELAKALAEA 569
Query: 683 YFGS----VRIHYLFFPSPFNSVKV 703
FG+ VR+ F +++ ++
Sbjct: 570 MFGNEEALVRVDMSEFMEKYSTSRL 594
>gi|298242789|ref|ZP_06966596.1| ATPase AAA-2 domain protein [Ktedonobacter racemifer DSM 44963]
gi|297555843|gb|EFH89707.1| ATPase AAA-2 domain protein [Ktedonobacter racemifer DSM 44963]
Length = 843
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 250/614 (40%), Positives = 352/614 (57%), Gaps = 61/614 (9%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKARE 139
F++FTERA K + +Q EA+ + + T+HLLLGL+ E G+ ++K R
Sbjct: 7 FDKFTERARKVLSLAQEEAQRFQHNYIGTEHLLLGLVREGEGVAAKVLANLGVELNKVRS 66
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
AV I + ++ + K+V E AV+ +R +++I EH+
Sbjct: 67 AVEFIIGRGDR-------------IVLGEIGLTPRAKKVIELAVDEARRLNHHYIGTEHL 113
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A VL+ LGV++ + + L R+ +K
Sbjct: 114 LLGLVREGEGIAAGVLESLGVNLEKVRTQTIQVLSQSNPPHERDAKHSK----------- 162
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+P ++Q +DLTA A +DPVIGR EI+R+IQIL RR KNNP L+GE
Sbjct: 163 ----TP------TIDQMGIDLTAAARAGTLDPVIGRHQEIERVIQILSRRNKNNPALIGE 212
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA R+V EVP L +KR+++LD+G L+AG K RGE E R+ +I EI+
Sbjct: 213 PGVGKTAIVEGLAQRLVSGEVPETLANKRLLTLDVGSLVAGTKYRGEFEERLKKIIEEIR 272
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
S D I+FIDEVHTL+G+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 273 NSRDCIIFIDEVHTLVGAGAA-----EGAVDAANILKPALSRGELQCIGATTLDEYRKYI 327
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
E+D AL RRFQ V+I EPS E+ + IL G+RE+YE HH T EA+ AA +++RYI+D
Sbjct: 328 ERDAALQRRFQEVIIREPSVEETIEILKGIRERYEQHHRLIITDEALRAATEMASRYITD 387
Query: 500 RYLPDKAIDLVDEAGSRAHIE-------LFKRKKEQQTCILSKPPDDYWQEIRTVQAMHE 552
R++PDKAIDL+DEA SR ++ L + K ++ + K QE + +
Sbjct: 388 RFMPDKAIDLIDEAASRVRMQNSLAPLNLKEAMKGLESVLREKEAAIQQQEYELAAELRD 447
Query: 553 VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+K + +A + ES D+P VG ++IA + S+W+GIPV +I
Sbjct: 448 ----REVKLRERIAKL--------ESGWQKERGSDKP-TVGEEEIAQIVSMWTGIPVMRI 494
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +EE L RVIGQ+EA+ ISRAV+R+R GLKDP RP + +F GPTGVGK
Sbjct: 495 AQEESQRLLQMEEALHSRVIGQNEAIEKISRAVRRARAGLKDPKRPIGSFIFMGPTGVGK 554
Query: 673 TELAKSLAACYFGS 686
TELA++LA FGS
Sbjct: 555 TELARTLAEFMFGS 568
>gi|385801820|ref|YP_005838223.1| negative regulator of genetic competence ClpC/MecB [Gardnerella
vaginalis HMP9231]
gi|333393443|gb|AEF31361.1| negative regulator of genetic competence ClpC/MecB [Gardnerella
vaginalis HMP9231]
Length = 829
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 246/617 (39%), Positives = 370/617 (59%), Gaps = 55/617 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA+SL + + T+H+LLGLI E G+ +D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARSLQHNYIGTEHILLGLIREGEGIAAKALNAKGVELDNTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + + + S + +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQIKEMIGTGT-------------VSPSGHIPFTPHAKQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGE--LAKEGREPSLAK--GVRENS 254
I LGL +G +VL ++ VD+ L + A+ ++G L ++G++ LA GV++
Sbjct: 108 ILLGLIREGEGVGTQVLIKMEVDLGDLRSTAMDLIRGNSGLPEDGQKGDLANAGGVQDKR 167
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
++ ++ L+QF +LT A + +DPVIGR EI+R++ +L RRTKNNP
Sbjct: 168 -----------NQSGSALLDQFGRNLTTEAEQGKLDPVIGRSKEIERVMVVLSRRTKNNP 216
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA +IV +VP L K++ SLD+G ++AG++ RG+ E R+ +
Sbjct: 217 VLIGEPGVGKTAVVEGLAQKIVAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKV 276
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE
Sbjct: 277 LKEIKTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDE 331
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + EPS + + IL GLR +YE HH+ T A+ +A +SA
Sbjct: 332 YRKYIEKDAALERRFQPIQVQEPSIAETIEILKGLRARYENHHHVTITDAALQSAAEMSA 391
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI DR LPDKAIDL+DEAG+R I KR L++PP+ +E+ + +
Sbjct: 392 RYIQDRNLPDKAIDLIDEAGARLRI---KR--------LTEPPE--LKELDSKISKLSEK 438
Query: 555 QGSRLKYDDV--VASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGI 607
+ +K D A + D E + E + + VV D IA+V S +GI
Sbjct: 439 KDEAIKNQDFEKAADLRDEQEKLEEERKNKEQAWREGESNVNMVVDEDVIASVVSNTTGI 498
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T E L+G+E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GP
Sbjct: 499 PVVKLTQAESKKLLGMEAELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPSGSFIFAGP 558
Query: 668 TGVGKTELAKSLAACYF 684
TGVGKTELAK+LA F
Sbjct: 559 TGVGKTELAKTLAQFLF 575
>gi|168214730|ref|ZP_02640355.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens CPE str. F4969]
gi|168217934|ref|ZP_02643559.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens NCTC 8239]
gi|182625994|ref|ZP_02953757.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens D str. JGS1721]
gi|170713829|gb|EDT26011.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens CPE str. F4969]
gi|177908701|gb|EDT71212.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens D str. JGS1721]
gi|182380045|gb|EDT77524.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens NCTC 8239]
Length = 814
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 367/613 (59%), Gaps = 52/613 (8%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKD-MVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ F E + K VI +E+ + K + T+HLL+GLI E+ + LE ++ +
Sbjct: 3 LDNFNENS-KIVINKGKESSLMLKHGYMGTEHLLIGLINENGQCSKILEESNVTEEKVLS 61
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ G+ S ++PF+ K++ + +VE ++ G++ PEHI
Sbjct: 62 FIKLY-----------VGIGEVNYSLDEVPFTPRCKKILDRSVEIAKEYGHSISRPEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRL-GVDVNHLAAVAVSRLQGELAKEGREPSL-AKGVRENSISGK 258
L L +G A +L ++ D+ +++ +L L GR PS +K ++E
Sbjct: 111 LALIKEREGVANLILTKIVKNDIKNIS----DKLNNIL---GRIPSKESKSLKEK----- 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ P R L + ++L +A + +DPVIGR+ E QR+++ILCRR KNNP L+G
Sbjct: 159 ----EKPKRKDTPTLNLYGINLIEKADKNKLDPVIGRKDETQRLLEILCRRMKNNPCLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA RI+ EVP + KRI +LD+ ++AGAK RGE E R+ +++E+
Sbjct: 215 EPGVGKTAVVEGLAQRILLGEVPDIIKDKRIFTLDVTSMLAGAKYRGEFEERLKKVLNEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ S D+ILFIDE+H ++G+G G +G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 275 KDSDDIILFIDEMHNIVGAG----GAEG-AIDASNILKPALARGEIQCIGATTTDEYRKN 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EPS+ED+V IL GLREKYE HHN K T EAI AAV+LS+RYI+
Sbjct: 330 IEKDSALERRFQPVVVKEPSKEDSVLILKGLREKYEVHHNVKLTDEAIEAAVNLSSRYIT 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA ++ IE + I+ PP + QE E + +
Sbjct: 390 DRFLPDKAIDLIDEAAAKVRIE---------SMIV--PPRLFKQEELIANLKIEKEEAIK 438
Query: 559 LKYDDVVASMGDTSEIVV-----ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
L+ ++ A + D ++ + L + ++ V + IA V S W+ IPV+++T
Sbjct: 439 LQDFELAAKLRDEELMLQEELERDKELWREENYNKIYEVNKEHIAKVVSKWTQIPVERLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE+L KRVIGQ EA+ IS+AV+RSRVGLKDP RP + F GPTGVGKT
Sbjct: 499 EKESSRLLKLEEKLSKRVIGQLEAIRTISKAVRRSRVGLKDPKRPIGSFAFLGPTGVGKT 558
Query: 674 ELAKSLAACYFGS 686
EL K+LA FG
Sbjct: 559 ELCKALAEAMFGD 571
>gi|406027561|ref|YP_006726393.1| ATPase/chaperone ClpC [Lactobacillus buchneri CD034]
gi|405126050|gb|AFS00811.1| ATPase/chaperone ClpC [Lactobacillus buchneri CD034]
Length = 830
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 241/608 (39%), Positives = 354/608 (58%), Gaps = 41/608 (6%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSI 144
FT A + +Q +AK + T+HLLLGL+ E +GI ++ V+
Sbjct: 5 FTPSAKNVLTIAQEQAKKFKHQAIGTEHLLLGLLIE--------TNGIAYKALQQFSVTA 56
Query: 145 WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLF 204
T + K SS +P+S K V A E+++ G + EHI L L
Sbjct: 57 EDVTEEVERFAGYGNLKDLSSNDYLPYSPKAKEVLAQAGEFAKKNGVPKVGTEHILLSLL 116
Query: 205 TVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA-LK 263
T + + R+L LG+D++ + V + R+ ++ G ++++ K +
Sbjct: 117 TDETILSSRILINLGLDLSQIRKVTL-----------RKMGISGGSMASNLASKQRGRQQ 165
Query: 264 SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323
P ++ ++ DLT A ++ +DP +GR+ E++R++QIL RRTKNNP+L+GE GVG
Sbjct: 166 KPADSKTPTIDSLARDLTEMARQDRLDPTVGRDLEVKRVVQILARRTKNNPVLIGEPGVG 225
Query: 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGD 383
KTAIAEGLA RIV +VP + KR+M LDMG L+AG K RGE E R+ +I EI + G+
Sbjct: 226 KTAIAEGLAERIVSGDVPGDMSKKRLMMLDMGSLVAGTKYRGEFEDRLKKVIDEIYQDGN 285
Query: 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDK 443
+ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQ I +TT DE++ E D
Sbjct: 286 IILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQLIGATTLDEYQKYIESDA 340
Query: 444 ALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503
AL RRF V++ EP+ ++ V IL GLR KYE HH+ + T +AI AV+LS RYISDR+LP
Sbjct: 341 ALERRFAKVMVDEPTTDETVEILKGLRPKYEQHHHVEITDDAIETAVNLSNRYISDRFLP 400
Query: 504 DKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK--- 560
DKAIDL+DEA ++ I+ ++ K D E+ + + ++++
Sbjct: 401 DKAIDLMDEAAAKVRIDHLQK---SDAVDDHKKLSDLLSELNEALVAQDYEKAAKIRKQT 457
Query: 561 --YDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
D +A D+ E + D P P D+A + W+GIPV ++++ E
Sbjct: 458 NQLQDELAQDNDSEE--------GSEDAHYPVKETPQDVAEIVGEWTGIPVTRLSSTEAD 509
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
LV LE+ L KRV+GQ+EA++A+SR+++R+R GLKDPNRP + +F GPTGVGKTELAK+
Sbjct: 510 RLVNLEKILHKRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKA 569
Query: 679 LAACYFGS 686
+A FGS
Sbjct: 570 VAEAVFGS 577
>gi|148272036|ref|YP_001221597.1| ATP-dependent protease, ATPase subunit [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147829966|emb|CAN00893.1| ATP-dependent protease, ATPase subunit [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 836
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 257/615 (41%), Positives = 366/615 (59%), Gaps = 58/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEAKMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I Q T +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQDIIGQGQQQPT-------------GHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE ++ G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEA-----------VAVGGE 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ G T L+QF +LT A + +DPVIGRE EI+R++QIL RR+KNNP+L+G
Sbjct: 157 AQQSQQAGST---VLDQFGRNLTQAARDGKLDPVIGREKEIERVMQILSRRSKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP L K++ +LD+G L+AG++ RG+ E R+ + EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGDVPETLKDKQLYTLDLGSLIAGSRYRGDFEERLKKVTKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+I FIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIITFIDEIHTLVGAGAA----EGA-IDAASILKPLLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
FEKD AL RRFQP+ + EPS + IL GLR++YEA H T AI +A +L+ RYI+
Sbjct: 329 FEKDAALERRFQPIQVQEPSLPHTINILKGLRDRYEAFHKVSITDGAIVSAANLADRYIA 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R + ILS PP+ ++ + I TV+ E
Sbjct: 389 DRFLPDKAIDLIDEAGARLRL-----------SILSAPPELREFDERISTVRVAKETA-- 435
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
++ D AS+ D + ++ L + D A V IA V + +GIPV
Sbjct: 436 --IEDQDFEKAASLRDEEKNLLGERLRLEKQWRSGDVRTTAEVDEGLIAEVLAQATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E LV +E+ L +RVIGQ+EA++A+S+ ++R+R GLKDP RP+ + +F GPTG
Sbjct: 494 FKLTEEESSRLVFMEKALHQRVIGQEEAISALSKTIRRTRAGLKDPRRPSGSFIFAGPTG 553
Query: 670 VGKTELAKSLAACYF 684
VGKTELAK+LA F
Sbjct: 554 VGKTELAKALAEFLF 568
>gi|308235068|ref|ZP_07665805.1| negative regulator of genetic competence ClpC/MecB [Gardnerella
vaginalis ATCC 14018 = JCM 11026]
gi|311114547|ref|YP_003985768.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gardnerella
vaginalis ATCC 14019]
gi|415702808|ref|ZP_11458954.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 284V]
gi|415705433|ref|ZP_11460704.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 75712]
gi|415707392|ref|ZP_11462161.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 0288E]
gi|417556993|ref|ZP_12208048.1| negative regulator of genetic competence ClpC/MecB [Gardnerella
vaginalis 315-A]
gi|310946041|gb|ADP38745.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gardnerella
vaginalis ATCC 14019]
gi|333601924|gb|EGL13358.1| negative regulator of genetic competence ClpC/MecB [Gardnerella
vaginalis 315-A]
gi|388052155|gb|EIK75179.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 75712]
gi|388053354|gb|EIK76345.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 284V]
gi|388053781|gb|EIK76745.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 0288E]
Length = 829
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 246/617 (39%), Positives = 370/617 (59%), Gaps = 55/617 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA+SL + + T+H+LLGLI E G+ +D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARSLQHNYIGTEHILLGLIREGEGIAAKALNAKGVELDNTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + + + S + +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQIKEMIGTGT-------------VSPSGHIPFTPHAKQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGE--LAKEGREPSLAK--GVRENS 254
I LGL +G +VL ++ VD+ L + A+ ++G L ++G++ LA GV++
Sbjct: 108 ILLGLIREGEGVGTQVLIKMEVDLGDLRSTAMDLIRGNSGLPEDGQKGDLANAGGVQDKR 167
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
++ ++ L+QF +LT A + +DPVIGR EI+R++ +L RRTKNNP
Sbjct: 168 -----------NQSGSALLDQFGRNLTTEAEQGKLDPVIGRSKEIERVMVVLSRRTKNNP 216
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA +IV +VP L K++ SLD+G ++AG++ RG+ E R+ +
Sbjct: 217 VLIGEPGVGKTAVVEGLAQKIVAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKV 276
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE
Sbjct: 277 LKEIKTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDE 331
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + EPS + + IL GLR +YE HH+ T A+ +A +SA
Sbjct: 332 YRKYIEKDAALERRFQPIQVQEPSIAETIEILKGLRARYENHHHVTITDAALQSAAEMSA 391
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI DR LPDKAIDL+DEAG+R I KR L++PP+ +E+ + +
Sbjct: 392 RYIQDRNLPDKAIDLIDEAGARLRI---KR--------LTEPPE--LKELDSKISKLSEK 438
Query: 555 QGSRLKYDDV--VASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGI 607
+ +K D A + D E + E + + VV D IA+V S +GI
Sbjct: 439 KDEAIKNQDFEKAADLRDEQEKLEEERKNKEQAWREGESNVNMVVDEDVIASVVSNTTGI 498
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T E L+G+E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GP
Sbjct: 499 PVVKLTQAESKKLLGMEAELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPSGSFIFAGP 558
Query: 668 TGVGKTELAKSLAACYF 684
TGVGKTELAK+LA F
Sbjct: 559 TGVGKTELAKTLAQFLF 575
>gi|392969833|ref|ZP_10335245.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
equorum subsp. equorum Mu2]
gi|392512121|emb|CCI58441.1| ATP-dependent Clp protease ATP-binding subunit [Staphylococcus
equorum subsp. equorum Mu2]
Length = 820
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/613 (41%), Positives = 360/613 (58%), Gaps = 58/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F R TERA + + +Q EA L + T+HLLLGL+ E P G A +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGI---------AAKV 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ S + + G + ++ K+V E +++ +R +NF+ EHI
Sbjct: 50 LESFEITEEKVVEEVEKLIGHGQEQMGALHYTPRAKKVIELSMDEARKLHHNFVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL ++G A RV L D+N +++ + ++ K P L+ + + S T
Sbjct: 110 LGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPELSNKNAQANKSNNTP 161
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP+L+GE
Sbjct: 162 TLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA I++ EVP L KR+MSLDMG ++AG K RGE E R+ ++ EI +
Sbjct: 211 GVGKTAIAEGLAQSIIKNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIHQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+GDVILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R E
Sbjct: 271 AGDVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKNIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EP+ ED + IL GLR++YEAHH + EA+ +A LS RY+SDR
Sbjct: 326 KDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEAVISAATLSHRYVSDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQGSR 558
+LPDKAIDL+DEA S+ + + PP+ + QEI V+ + S+
Sbjct: 386 FLPDKAIDLIDEASSKVRLRSH-----------TTPPNLKELEQEIEQVKNEKDAAVHSQ 434
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIPVQQI 612
++++ A++ D + +E A+++ + A G +DI V + W+GIP+ +I
Sbjct: 435 -EFEN-AANLRD-KQTKLEKQYEEANNNWKNAQNGDNTSLSEEDIGEVIAGWTGIPLTKI 491
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
E L+ LE+ L RVIGQ AV +IS+AV+R+R GLKDP RP + +F GPTGVGK
Sbjct: 492 NETESDRLLNLEDTLHNRVIGQKAAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGK 551
Query: 673 TELAKSLAACYFG 685
TELA++LA FG
Sbjct: 552 TELARALAESMFG 564
>gi|257791981|ref|YP_003182587.1| ATPase AAA-2 domain-containing protein [Eggerthella lenta DSM 2243]
gi|317489990|ref|ZP_07948482.1| ATPase [Eggerthella sp. 1_3_56FAA]
gi|325829962|ref|ZP_08163420.1| negative regulator of genetic competence ClpC/MecB [Eggerthella sp.
HGA1]
gi|257475878|gb|ACV56198.1| ATPase AAA-2 domain protein [Eggerthella lenta DSM 2243]
gi|316910988|gb|EFV32605.1| ATPase [Eggerthella sp. 1_3_56FAA]
gi|325488129|gb|EGC90566.1| negative regulator of genetic competence ClpC/MecB [Eggerthella sp.
HGA1]
Length = 854
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 253/613 (41%), Positives = 369/613 (60%), Gaps = 54/613 (8%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGIT-IDKAREA 140
FE+FT++A K ++ +Q EA+SL + V T+H+LLGLI E +G + ++ +A
Sbjct: 3 FEKFTDKARKVLVLAQDEARSLHQPYVGTEHILLGLIQE---KDGLAAQALDRLNVKYDA 59
Query: 141 VVSIWHSTN--NQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
VV ++DTD + + F+ KRV E ++ + G ++I+ EH
Sbjct: 60 VVQAIRQVVAIDEDTD----------VSGHLSFTPRVKRVLENSLREAMQMGQSYISTEH 109
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL-AKEGREPSLAKGVRENSISG 257
+ LG+ DG+A VL RLGV + + + A++ L G+ GR P
Sbjct: 110 LLLGIVREGDGTALEVLTRLGVSGDDVRS-ALNDLVGQSPVYAGRNP------------- 155
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
G T S L++F DLT +A + +DPVIGR EI+R++Q+L RR KNNP+L+
Sbjct: 156 ----FDPNGNTSDSVLKEFGTDLTQKARDGKLDPVIGRAGEIERVMQVLSRRQKNNPLLI 211
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+AEGLA IV +VP L KR+ +LD+ L+AG+K RGE E R+ I E
Sbjct: 212 GEPGVGKTAVAEGLAQLIVSNQVPDILRGKRLFTLDVSALVAGSKYRGEFEERLKKCIKE 271
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+ +GD+ILFIDE+HTLIG+G+ +G+ +D + +LKP L RGE+Q I +TT DE+R
Sbjct: 272 VMDAGDIILFIDEMHTLIGAGSA----EGS-IDAAAILKPPLSRGEIQVIGATTIDEYRK 326
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ + EP++E A+RI+ GLR++YEAHH FT EA+ AAV+LS RYI
Sbjct: 327 HLEKDSALERRFQPITVGEPNEEQAMRIMEGLRDRYEAHHQVHFTDEALQAAVNLSNRYI 386
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
DR+LPDKAID++DEAG+R I + L K + E+RT++ + S
Sbjct: 387 QDRFLPDKAIDVLDEAGARMRI---------RNMTLPKELRELDDELRTIRGEKDSAIAS 437
Query: 558 RLKYDDVVASMGDTSEIVVE--SSLPSASDDDEPAV--VGPDDIAAVASLWSGIPVQQIT 613
+ ++ SE+ + + +D + +V V +DIA V S+ +G+PV +T
Sbjct: 438 Q-DFERAAQLRDQESELKAKRIEAEKKWEEDAQKSVHQVTVEDIADVVSMTTGVPVSNLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E L +RV+GQ+EAV A+S+A++RSR GLKDP RP + +F GP+GVGKT
Sbjct: 497 EAETEKLLRMEAVLHERVVGQEEAVTALSKAIRRSRSGLKDPKRPAGSFIFLGPSGVGKT 556
Query: 674 ELAKSLAACYFGS 686
EL+K+LA F S
Sbjct: 557 ELSKALAEFLFNS 569
>gi|110803502|ref|YP_699699.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens SM101]
gi|110684003|gb|ABG87373.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens SM101]
Length = 814
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 364/613 (59%), Gaps = 52/613 (8%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKD-MVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ F E + K VI +E+ + K + T+HLL+GLI E+ + LE ++ +
Sbjct: 3 LDNFNENS-KIVINKGKESSLMLKHGYMGTEHLLIGLINENGQCSKILEESNVTEEKVLS 61
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ G+ S ++PF+ K + + +VE ++ G++ PEHI
Sbjct: 62 FIKLY-----------VGIGEVNYSLDEVPFTPRCKNILDRSVEIAKEYGHSISRPEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRL-GVDVNHLAAVAVSRLQGELAKEGREPSL-AKGVRENSISGK 258
L L +G A +L ++ D+ +++ +L L GR PS +K ++E
Sbjct: 111 LALIKEKEGVANLILTKIVKNDIKNIS----DKLNNIL---GRIPSKESKSLKEK----- 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ P R L + ++L +A + +DPVIGR+ E QR+++ILCRR KNNP L+G
Sbjct: 159 ----EKPKRKDTPTLNLYGINLIEKADKNKLDPVIGRKDETQRLLEILCRRMKNNPCLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA RI+ EVP + KRI +LD+ ++AGAK RGE E R+ ++ E+
Sbjct: 215 EPGVGKTAVVEGLAQRILLGEVPDIIKDKRIFTLDVTSMLAGAKYRGEFEERLKKVLKEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ S D+ILFIDE+H ++ +G G +G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 275 KDSDDIILFIDEMHNIVRAG----GAEG-AIDASNILKPALARGEIQCIGATTTDEYRKN 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EPS+ED+V IL GLREKYE HHN K T EAI AAV+LS+RYI+
Sbjct: 330 IEKDSALERRFQPVVVKEPSKEDSVLILKGLREKYEVHHNVKLTDEAIEAAVNLSSRYIT 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA ++ IE + I+ PP + QE E + +
Sbjct: 390 DRFLPDKAIDLIDEAAAKVRIE---------SMIV--PPRLFKQEELIANLKIEKEEAIK 438
Query: 559 LKYDDVVASMGDTSEIVVE-----SSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
L+ ++ A + D ++ E L + ++ V + IA V S W+ IPV+++T
Sbjct: 439 LQDFELAAKLRDEESMLQEELERDKELWREENYNKIYEVNKEHIAKVVSKWTQIPVERLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE+L KRVIGQ EA+ IS+AV+RSRVGLKDP RP + F GPTGVGKT
Sbjct: 499 EKESSKLLKLEEKLSKRVIGQLEAIKTISKAVRRSRVGLKDPKRPIGSFAFLGPTGVGKT 558
Query: 674 ELAKSLAACYFGS 686
EL K+LA FG
Sbjct: 559 ELCKALAEAMFGD 571
>gi|384456448|ref|YP_005669046.1| negative regulator of genetic competence ClpC/mecB [Candidatus
Arthromitus sp. SFB-mouse-Yit]
gi|417961014|ref|ZP_12603506.1| ClpC [Candidatus Arthromitus sp. SFB-2]
gi|417963873|ref|ZP_12605726.1| ClpC [Candidatus Arthromitus sp. SFB-3]
gi|417965450|ref|ZP_12606975.1| ClpC [Candidatus Arthromitus sp. SFB-4]
gi|417966566|ref|ZP_12607903.1| ClpC [Candidatus Arthromitus sp. SFB-5]
gi|417968433|ref|ZP_12609454.1| ClpC [Candidatus Arthromitus sp. SFB-co]
gi|418015512|ref|ZP_12655077.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Candidatus
Arthromitus sp. SFB-mouse-NYU]
gi|418373339|ref|ZP_12965428.1| ClpC [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|345505847|gb|EGX28141.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Candidatus
Arthromitus sp. SFB-mouse-NYU]
gi|346984794|dbj|BAK80470.1| negative regulator of genetic competence ClpC/mecB [Candidatus
Arthromitus sp. SFB-mouse-Yit]
gi|380331576|gb|EIA22599.1| ClpC [Candidatus Arthromitus sp. SFB-3]
gi|380334540|gb|EIA24925.1| ClpC [Candidatus Arthromitus sp. SFB-2]
gi|380337619|gb|EIA26648.1| ClpC [Candidatus Arthromitus sp. SFB-4]
gi|380339701|gb|EIA28396.1| ClpC [Candidatus Arthromitus sp. SFB-co]
gi|380340944|gb|EIA29477.1| ClpC [Candidatus Arthromitus sp. SFB-5]
gi|380341175|gb|EIA29668.1| ClpC [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 812
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 241/612 (39%), Positives = 368/612 (60%), Gaps = 50/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FE+ TERA K + +S +A LG + T+H+LLGL+ ED L S
Sbjct: 1 MFEKLTERARKVISYSGDDALKLGHGFIGTEHILLGLLREDGPAQKILNS---------- 50
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+++ ++ + G+ +++P + TK+V E++++ ++ G+N ++PEHI
Sbjct: 51 -FDVYYDDIFKEIRTILSPGEIEIKNSEIPLTPRTKKVIESSIDEAKKLGHNHVSPEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L + DG A ++L + GV V + ++ L + + + P + +N
Sbjct: 110 LAIINEPDGVAYKILDKKGVSVVKIWNQTINALN--VTIDVQNPHEKEQQLKN------- 160
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L +P L+Q DLT A+E +DPVIGR+TE QR+++ILCRR KNNP L+G+
Sbjct: 161 -LPTP------VLDQHGRDLTKLANEGKLDPVIGRDTETQRVLEILCRRIKNNPCLIGDP 213
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAI EGLA +I++ +P L +KR+++LD+ L+AG K RGE E R+ ++ EI++
Sbjct: 214 GVGKTAIIEGLAQKIIEGNIPEILKNKRVITLDLSSLIAGTKYRGEFEERLKKIMEEIKR 273
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
S ++ILFIDE+HT+IG+G G +G +D SN+LKP+L RGE+QCI +TT DE+R E
Sbjct: 274 SRNIILFIDEIHTIIGAG----GAEG-AIDASNILKPALARGEIQCIGATTIDEYRKYIE 328
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP++ + + IL+G+R+KYE HH K T EAI AV LS R+I DR
Sbjct: 329 KDTALERRFQPIFVGEPNENETIDILIGIRDKYETHHKVKITDEAIKFAVSLSVRFIPDR 388
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
YLPDKAIDL+DEA ++ + L+ P + E + E + L+
Sbjct: 389 YLPDKAIDLIDEASAKIRVRN-----------LTVPIEVKEIEEEIAKVGKEKQEAITLE 437
Query: 561 YDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ AS+ D + + E L ++ + D+ ++ ++A+V + W+ IPV+++T
Sbjct: 438 DFEKAASLRDKEQKLKE-RLENSKEKWKVEKYDKEFILTEQELASVVASWTKIPVEKLTQ 496
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ L++ L+ RVI Q+EAV +++RAVKR RVGLKDP RP + +F GPTGVGKTE
Sbjct: 497 TESEKLLKLDDILRSRVIDQNEAVISVARAVKRGRVGLKDPKRPIGSFIFLGPTGVGKTE 556
Query: 675 LAKSLAACYFGS 686
L K+LA FGS
Sbjct: 557 LCKALADAVFGS 568
>gi|227876310|ref|ZP_03994423.1| ATPase with chaperone activity, ATP-binding subunit [Mobiluncus
mulieris ATCC 35243]
gi|269976114|ref|ZP_06183113.1| negative regulator of genetic competence ClpC/MecB [Mobiluncus
mulieris 28-1]
gi|307701521|ref|ZP_07638539.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
mulieris FB024-16]
gi|227843083|gb|EEJ53279.1| ATPase with chaperone activity, ATP-binding subunit [Mobiluncus
mulieris ATCC 35243]
gi|269935707|gb|EEZ92242.1| negative regulator of genetic competence ClpC/MecB [Mobiluncus
mulieris 28-1]
gi|307613313|gb|EFN92564.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
mulieris FB024-16]
Length = 915
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 257/614 (41%), Positives = 370/614 (60%), Gaps = 46/614 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L ++ + T+HLLLGLI E D LE+ GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEARRLNQNYIGTEHLLLGLIHEGDGIAARALETMGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V+ I T +PF+ ++V E ++ + G+N+I EH
Sbjct: 61 AQVIEIIGEGEQPTT-------------GHIPFTPRARKVLEYSMREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL DG A +VL LG D+N + + L G + G P + V + G
Sbjct: 108 ILLGLLREGDGVASQVLVNLGADLNTVRQTVIELLSG--FQGGNAPGSDRDV--VGVGGG 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A +P ++ L+QF +LT A E +DPVIGR E++R++QIL RRTKNNP+L+G
Sbjct: 164 RA--DNPRGGNSALLDQFGRNLTQAAQENKLDPVIGRTKEMERVMQILSRRTKNNPVLVG 221
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP L K++ SLDMG L+AG++ RG+ E R+ ++ EI
Sbjct: 222 EPGVGKTAVVEGLAQSIVRGDVPETLKDKQLYSLDMGSLVAGSRYRGDFEERLKKVLKEI 281
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 282 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPILARGELQTIGATTLEEYRKY 336
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E+ V IL GLR++YE+HH T A+ +A L+ RYIS
Sbjct: 337 IEKDSALERRFQPVRVEEPSVEETVAILKGLRDRYESHHRVMITDAAVASAAQLADRYIS 396
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I+ ++ PP+ +E+ A + +
Sbjct: 397 DRFLPDKAIDLIDEAGARLRIQR-----------MTAPPE--LKEVDEKIAKTRRAKEAA 443
Query: 559 LKYDDV--VASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ D AS+ D SE + + +D VV + IA V ++ +GIPV +
Sbjct: 444 IDAQDFEKAASLRDEEKKLASERAEKEEQWRSGEDKTKLVVDAEQIAEVLAMATGIPVFK 503
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L+ +E++L KR+IGQ+EAV A+S++++R+R GLKDP RP + +F GPTGVG
Sbjct: 504 LTQAESSKLLRMEDELHKRIIGQNEAVKAVSQSIRRTRAGLKDPKRPGGSFIFAGPTGVG 563
Query: 672 KTELAKSLAACYFG 685
KTELAK+LA FG
Sbjct: 564 KTELAKALAEFLFG 577
>gi|342733080|ref|YP_004771919.1| negative regulator of genetic competence clpC/mecB [Candidatus
Arthromitus sp. SFB-mouse-Japan]
gi|342330535|dbj|BAK57177.1| negative regulator of genetic competence clpC/mecB [Candidatus
Arthromitus sp. SFB-mouse-Japan]
Length = 812
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 241/612 (39%), Positives = 368/612 (60%), Gaps = 50/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FE+ TERA K + +S +A LG + T+H+LLGL+ ED L S
Sbjct: 1 MFEKLTERARKVISYSGDDALKLGHGFIGTEHILLGLLREDGPAQKILNS---------- 50
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+++ ++ + G+ +++P + TK+V E++++ ++ G+N ++PEHI
Sbjct: 51 -FDVYYDDIFKEIRTILSPGEIEIKNSEIPLTPRTKKVIESSIDEAKKLGHNHVSPEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L + DG A ++L + GV V + ++ L + + + P + +N
Sbjct: 110 LAIINEPDGVAYKILDKKGVSVVKIWNQTINALN--VTIDVQNPHEKEQQLKN------- 160
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L +P L+Q DLT A+E +DPVIGR+TE QR+++ILCRR KNNP L+G+
Sbjct: 161 -LPTP------VLDQHGRDLTKLANEGKLDPVIGRDTETQRVLEILCRRIKNNPCLIGDP 213
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAI EGLA +I++ +P L +KR+++LD+ L+AG K RGE E R+ ++ EI++
Sbjct: 214 GVGKTAIIEGLAQKIIEGNIPEILKNKRVITLDLSSLIAGTKYRGEFEERLKKIMEEIKR 273
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
S ++ILFIDE+HT+IG+G G +G +D SN+LKP+L RGE+QCI +TT DE+R E
Sbjct: 274 SRNIILFIDEIHTIIGAG----GAEG-AIDASNILKPALARGEIQCIGATTIDEYRKYIE 328
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP++ + + IL+G+R+KYE HH K T EAI AV LS R+I DR
Sbjct: 329 KDTALERRFQPIFVGEPNENETIDILIGIRDKYETHHKVKITDEAIKFAVSLSVRFIPDR 388
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
YLPDKAIDL+DEA ++ + L+ P + E + E + L+
Sbjct: 389 YLPDKAIDLIDEASAKIRVRN-----------LTVPIEVKEIEEEIAKVGKEKQEAITLE 437
Query: 561 YDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ AS+ D + + E L ++ + D+ ++ ++A+V + W+ IPV+++T
Sbjct: 438 DFEKAASLRDKEQKLKE-RLENSKEKWKVEKYDKEFILTEQELASVVASWTKIPVEKLTH 496
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ L++ L+ RVI Q+EAV +++RAVKR RVGLKDP RP + +F GPTGVGKTE
Sbjct: 497 TESEKLLKLDDILRSRVIDQNEAVISVARAVKRGRVGLKDPKRPIGSFIFLGPTGVGKTE 556
Query: 675 LAKSLAACYFGS 686
L K+LA FGS
Sbjct: 557 LCKALADAVFGS 568
>gi|443294551|ref|ZP_21033645.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
with DnaK, DnaJ, and GrpE [Micromonospora lupini str.
Lupac 08]
gi|385882023|emb|CCH21911.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
with DnaK, DnaJ, and GrpE [Micromonospora lupini str.
Lupac 08]
Length = 847
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 257/617 (41%), Positives = 367/617 (59%), Gaps = 58/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G KE A G S S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEPAAAGAAPGEAAPSTS-- 165
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 166 ------------LVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGL+ +I++ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLSQKIIKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVGEPSLAHTIEILKGLRDRYEAHHRVSITDAALVAAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R I ++ PPD D+ + I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLRDFDERIAQVRRDKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D A + D + ++ A D D + V + IA V W+GIPV
Sbjct: 434 SAIDAQDFERAAQLRDKEKQLLGQKAQREKEWKAGDLDVVSEVDDEQIAEVLGNWTGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+G
Sbjct: 494 YKLTEEETSRLLRMEDELHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFGS 686
VGKTEL+K+LA FGS
Sbjct: 554 VGKTELSKALAEFLFGS 570
>gi|373463300|ref|ZP_09554927.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
kisonensis F0435]
gi|371764988|gb|EHO53353.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
kisonensis F0435]
Length = 830
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 244/612 (39%), Positives = 358/612 (58%), Gaps = 49/612 (8%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSI 144
FT A + +Q +AK + T+HLLLGL+ E +GI ++ V+
Sbjct: 5 FTPSAKNVLTIAQEQAKKFKHQAIGTEHLLLGLLIE--------TNGIAYKALQQFSVTA 56
Query: 145 WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLF 204
T + K S++ +P+S K V A ++++ G + EHI L L
Sbjct: 57 EDITEEVERFAGYGNLKNLSNSDYLPYSPKAKEVLAQAGDFAKKNGVPKVGTEHILLSLL 116
Query: 205 TVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKS 264
T + + R+L LG+D++ + V + ++ G+ S++ AA +
Sbjct: 117 TDETILSSRILINLGLDLSQIRKVTLRKM---------------GISGGSMASNMAAKQR 161
Query: 265 PGR------TRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
GR ++ ++ DLT A ++ +DP IGR+ E++R++QIL RRTKNNP+L+G
Sbjct: 162 NGRQSKRNESKTPTIDSLARDLTELARQDRLDPTIGRDLEVKRVVQILARRTKNNPVLIG 221
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV+ EVP +++KR+M LDMG L+AG K RGE E R+ +I EI
Sbjct: 222 EPGVGKTAIAEGLAERIVKGEVPGDMVNKRLMMLDMGSLVAGTKYRGEFEDRLKKVIDEI 281
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQ I +TT DE++
Sbjct: 282 YQDGNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQLIGATTLDEYQKY 336
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E D AL RRF V++ EPS ++ IL GLR KYE HH+ + T +AI AV+LS RYIS
Sbjct: 337 IESDAALERRFAKVMVDEPSADETAEILKGLRPKYEQHHHVEITDDAIETAVNLSNRYIS 396
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA ++ I+ + S+ DD+ Q + ++E +
Sbjct: 397 DRFLPDKAIDLMDEAAAKVRIDHLQN---------SEVVDDHKQLSELLSQLNEALVAQ- 446
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDE----PAVVGPDDIAAVASLWSGIPVQQITA 614
YD + + E + SD+ + P D+A + + W+GIPV +++
Sbjct: 447 -DYDKAAKLRKKANALQDELAKDDQSDNGDDTHYPVKETGQDVAEIVAEWTGIPVTRLSR 505
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E LV LE+ L KRV+GQ+EA++A+SR+++R+R GLKDPNRP + +F GPTGVGKTE
Sbjct: 506 TEADRLVNLEKVLHKRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMFLGPTGVGKTE 565
Query: 675 LAKSLAACYFGS 686
LAK++A FGS
Sbjct: 566 LAKAVAEAVFGS 577
>gi|306817201|ref|ZP_07450948.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
mulieris ATCC 35239]
gi|304650003|gb|EFM47281.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mobiluncus
mulieris ATCC 35239]
Length = 915
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 256/614 (41%), Positives = 368/614 (59%), Gaps = 46/614 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L ++ + T+HLLLGLI E D LE+ GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQDEARRLNQNYIGTEHLLLGLIHEGDGIAARALETMGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V+ I T +PF+ ++V E ++ + G+N+I EH
Sbjct: 61 AQVIEIIGEGEQPTT-------------GHIPFTPRARKVLEYSMREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL DG A +VL LG D+N + + L G + G P + V + G
Sbjct: 108 ILLGLLREGDGVASQVLVNLGADLNTVRQTVIELLSG--FQGGNAPGSDRDV--VGVGGG 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A +P ++ L+QF +LT A E +DPVIGR E++R++QIL RRTKNNP+L+G
Sbjct: 164 RA--DNPRGGNSALLDQFGRNLTQAAQENKLDPVIGRTKEMERVMQILSRRTKNNPVLVG 221
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP L K++ SLDMG L+AG++ RG+ E R+ ++ EI
Sbjct: 222 EPGVGKTAVVEGLAQSIVRGDVPETLKDKQLYSLDMGSLVAGSRYRGDFEERLKKVLKEI 281
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT +E+R
Sbjct: 282 RTRGDIILFIDEIHTLVGAGAA-----EGAIDAASILKPILARGELQTIGATTLEEYRKY 336
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E+ V IL GLR++YE+HH T A+ +A L+ RYIS
Sbjct: 337 IEKDSALERRFQPVRVEEPSVEETVAILKGLRDRYESHHRVMITDAAVASAAQLADRYIS 396
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I+ ++ PP+ +E+ A + +
Sbjct: 397 DRFLPDKAIDLIDEAGARLRIQR-----------MTAPPE--LKEVDEKIAKTRRAKEAA 443
Query: 559 LKYDDV--VASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ D AS+ D SE + + +D VV + IA V ++ +GIPV +
Sbjct: 444 IDAQDFEKAASLRDEEKKLASERAEKEEQWRSGEDKTKLVVDAEQIAEVLAMATGIPVFK 503
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L+ +E++L KR+IGQ+EAV A+S++++R+R GLKDP RP + +F GPTGVG
Sbjct: 504 LTQAESSKLLRMEDELHKRIIGQNEAVKAVSQSIRRTRAGLKDPKRPGGSFIFAGPTGVG 563
Query: 672 KTELAKSLAACYFG 685
KTELAK+LA FG
Sbjct: 564 KTELAKALAEFLFG 577
>gi|418577091|ref|ZP_13141221.1| putative stress response-related Clp ATPase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379324453|gb|EHY91601.1| putative stress response-related Clp ATPase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 820
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/612 (40%), Positives = 353/612 (57%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F R TERA + + +Q EA L + T+HLLLGL+ E P G A +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGI---------AAKV 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + + + G + ++ K+V E +++ +R +NF+ EHI
Sbjct: 50 LETFEITEEKVVEEVEKLIGHGQEQMGALHYTPRAKKVIELSMDEARKLHHNFVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL ++G A RV L D+N +++ + ++ K P ++ + + S T
Sbjct: 110 LGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMSNKNAQANKSNNTP 161
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP+L+GE
Sbjct: 162 TLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA+ IV EVP L KR+MSLDMG ++AG K RGE E R+ ++ EI +
Sbjct: 211 GVGKTAIAEGLALAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIHQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R E
Sbjct: 271 AGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRNNIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EP+ ED + IL GLR++YEAHH + EA+ +A LS RY+SDR
Sbjct: 326 KDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALVSAAKLSHRYVSDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQAMHEV 553
+LPDKAIDL+DEA S+ ++ ++ EQQ + D + QE + +
Sbjct: 386 FLPDKAIDLIDEASSKVRLKSHTTPPNLKEIEQQIEQVKNEKDAAVHAQEFENAANLRDK 445
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+Y++ + +T + + + +DI V + W+GIP+ +I
Sbjct: 446 QTKLEKQYEEANTNWKNTQ-------------NGDNTSLSEEDIGEVIAGWTGIPLTKIN 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LE+ L RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 ETESDRLLNLEDTLHNRVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESMFG 564
>gi|386356248|ref|YP_006054494.1| ATP-dependent Clp protease [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|365806756|gb|AEW94972.1| putative ATP-dependent Clp protease [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 843
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 372/616 (60%), Gaps = 58/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G + G+E + A G E + S
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG--YQGGKESATAGGPAEGTPS-- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 ----------TSLVLDQFGRNLTQAARETKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 214 EPGVGKTAVVEGLAQAIVKGEVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 274 RTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKH 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 329 LEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDAALVAAATLADRYIS 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ ++I V+ E
Sbjct: 389 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDEKIADVRREKE---- 433
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D AS+ D + ++ + A D D A V + IA V + +GIPV
Sbjct: 434 SAIDSQDFEKAASLRDKEKQLLAAKTKREKEWKAGDMDVVAEVDEELIAEVLATATGIPV 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KRVIGQ +A+ A+S+A++R+R GLKDP RP + +F GP+G
Sbjct: 494 FKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSG 553
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 554 VGKTELSKTLAEFLFG 569
>gi|403047553|ref|ZP_10903021.1| stress response-related Clp ATPase [Staphylococcus sp. OJ82]
gi|402763087|gb|EJX17181.1| stress response-related Clp ATPase [Staphylococcus sp. OJ82]
Length = 820
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/613 (41%), Positives = 360/613 (58%), Gaps = 58/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F R TERA + + +Q EA L + T+HLLLGL+ E P G A +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGI---------AAKV 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ S + + G + ++ K+V E +++ +R +NF+ EHI
Sbjct: 50 LESFEITEEKVVEEVEKLIGHGQEQMGALHYTPRAKKVIELSMDEARKLHHNFVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL ++G A RV L D+N +++ + ++ K P L+ + + S T
Sbjct: 110 LGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPELSNKNAQANKSNNTP 161
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP+L+GE
Sbjct: 162 TLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA I++ EVP L KR+MSLDMG ++AG K RGE E R+ ++ EI +
Sbjct: 211 GVGKTAIAEGLAQSIIKNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIHQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+GDVILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R E
Sbjct: 271 AGDVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKNIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EP+ ED + IL GLR++YEAHH + EA+ +A LS RY+SDR
Sbjct: 326 KDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEAVISAATLSHRYVSDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQGSR 558
+LPDKAIDL+DEA S+ + + PP+ + QEI V+ + S+
Sbjct: 386 FLPDKAIDLIDEASSKVRLRSH-----------TTPPNLKELEQEIEQVKNEKDAAVHSQ 434
Query: 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVG------PDDIAAVASLWSGIPVQQI 612
++++ A++ D + +E A+++ + A G +DI V + W+GIP+ +I
Sbjct: 435 -EFEN-AANLRD-KQTKLEKQYEEANNNWKNAQNGDNTSLSEEDIGEVIAGWTGIPLTKI 491
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
E L+ LE+ L RVIGQ AV +IS+AV+R+R GLKDP RP + +F GPTGVGK
Sbjct: 492 NETESDRLLNLEDTLHNRVIGQKAAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGK 551
Query: 673 TELAKSLAACYFG 685
TELA++LA FG
Sbjct: 552 TELARALAESMFG 564
>gi|94970600|ref|YP_592648.1| ATPase AAA [Candidatus Koribacter versatilis Ellin345]
gi|94552650|gb|ABF42574.1| ATPase AAA-2 [Candidatus Koribacter versatilis Ellin345]
Length = 818
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 239/607 (39%), Positives = 364/607 (59%), Gaps = 48/607 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLESGITIDKARE 139
+FER+TE+A + + F++ EA G + T+HLLLGL+ ED+ N FL +++ R+
Sbjct: 1 MFERYTEKARRVIFFARYEASQFGSPYIETEHLLLGLLREDKALTNRFLRQHSSVESIRK 60
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ H+T + S++ +P S KRV A E + + I EH+
Sbjct: 61 QIEG--HTTIREKV----------STSVDLPLSNECKRVLAYAAEEAERLSHKHIGTEHL 108
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL + A +L H + ++ ++ ELA+ +E
Sbjct: 109 LLGLLREEKCFAAEIL--------HERGLRLATIREELARTSQE---------------K 145
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A + + +S L +F DLT A + +DP++GR++E++R+IQILCRRTKNNP+L+GE
Sbjct: 146 AQPQQRQQRESSLLAEFSRDLTQVAMDNQLDPLVGRDSELERVIQILCRRTKNNPVLIGE 205
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA RI EVP FL KRI++LD+ L++AG K RG+ E R+ T++ E+
Sbjct: 206 PGVGKTAIVEGLAQRIADGEVPSFLADKRILALDLSLIVAGTKYRGQFEERLKTIMKELM 265
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++ + I+FIDE+HTL+G+G+ +G+ LD +N+LKP+L RGE+QCI +TT E+R
Sbjct: 266 ENQNAIIFIDELHTLVGAGSA----EGS-LDAANILKPALSRGEIQCIGATTPGEYRKSI 320
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD++L RRFQ V ++ P +E AV++L G++++YE H +T +AI AV+ S RYI D
Sbjct: 321 EKDRSLERRFQAVKVNPPDEETAVKVLAGIKDRYEKFHAVTYTDDAITFAVYHSNRYIPD 380
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEAG+R ++L + ++ + K + A HE + +R
Sbjct: 381 RFLPDKAIDLIDEAGAR--VKLRQTSLPEEITEVQKRIKFIVHRMENAIANHE-FEKARF 437
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERML 619
D+ + + + L D+ VVG +DI V S W+G+P+ I +E
Sbjct: 438 YSDEERKERENLRGLREKYHL----DESSTGVVGREDIEDVVSRWTGVPIMSIKEEETAK 493
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ +EE+L KRVI Q++A++A++RA++RSR GLK PNRP + LF GPTGVGKTE+A++L
Sbjct: 494 LLRIEEELHKRVISQEKAISALARAIRRSRAGLKSPNRPIGSFLFLGPTGVGKTEVARTL 553
Query: 680 AACYFGS 686
A FGS
Sbjct: 554 AQFMFGS 560
>gi|410478721|ref|YP_006766358.1| ATP-dependent Clp protease, ATPase subunit [Leptospirillum
ferriphilum ML-04]
gi|424868150|ref|ZP_18291912.1| Putative ATP-dependent Clp protease, ATPase subunit [Leptospirillum
sp. Group II 'C75']
gi|124514649|gb|EAY56161.1| putative ATP-dependent Clp protease, ATPase subunit [Leptospirillum
rubarum]
gi|206602544|gb|EDZ39025.1| Putative ATP-dependent Clp protease, ATPase subunit [Leptospirillum
sp. Group II '5-way CG']
gi|387221522|gb|EIJ76073.1| Putative ATP-dependent Clp protease, ATPase subunit [Leptospirillum
sp. Group II 'C75']
gi|406773973|gb|AFS53398.1| putative ATP-dependent Clp protease, ATPase subunit [Leptospirillum
ferriphilum ML-04]
Length = 813
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 252/628 (40%), Positives = 378/628 (60%), Gaps = 55/628 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+ ++FTE+ K +I ++ EA+ D + T+H++L L+ E D P L+ G+T D+ R
Sbjct: 1 MMDKFTEKGRKVIIMAREEAEKHQNDYLGTEHIVLALVREQDGIPVAVLKRMGLTPDQIR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + G + ++P + K+V E +V+ +R G+ I EH
Sbjct: 61 ------------MEIERNLLGGTSTLTFGELPLTPRVKKVIEYSVDEARLLGHTHIGSEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LG+ +DG G++L+ LG N +AA ++ SL K N K
Sbjct: 109 LLLGVLREEDGIGGKILRALGA--NLMAARQLT------------ASLLKRANTNVSREK 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P AL+ F DLT ASE +DPVIGR EI+R++QIL RRTKNNP+L+G
Sbjct: 155 ERKSNTP------ALDDFGRDLTQMASEGQLDPVIGRYDEIERVLQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
ESGVGKTAI EGLA RIV AEVP LL+KR+++LD+G L+AG K RG+ E R+ ++ E+
Sbjct: 209 ESGVGKTAIVEGLAQRIVNAEVPDNLLNKRVIALDLGSLVAGTKYRGQFEERLKIVMKEV 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+G++I+FIDE+HTL+G+G +G+ +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 269 VTAGNIIIFIDELHTLVGAGAA----EGS-IDASNMLKPALSRGEIQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQ + + EP E+A RI+ GLR++YE HH + T EAI+ AV LS RY++
Sbjct: 324 IEKDGALKRRFQSIFVDEPPIEEAERIIHGLRDRYEEHHGVQITDEAIHDAVTLSERYVT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTC--ILSKPPDDYWQEIRTVQAMHEVVQG 556
DR+LPDKAID++DEAGSRA ++ F +E + L K + + IR VQ E V
Sbjct: 384 DRFLPDKAIDIIDEAGSRAKLKSFSLPEEIKELDQSLKKVVREKEKAIR-VQNFEEAV-- 440
Query: 557 SRLK-YDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
RL+ +D++ G+ + + + P +G ++++ + S +GIP+ +I
Sbjct: 441 -RLRAQEDMLKKQGEDE----KRKWKEEQEKNRPT-IGREEVSVIVSKMTGIPLYKIEEG 494
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E L+ LE +L +R++GQ+EA++A++RA++RSR G+K RP + +F GPTGVGKTEL
Sbjct: 495 ESERLLKLEGELHRRIVGQEEALSAVARAIRRSRAGIKGEKRPIGSFIFLGPTGVGKTEL 554
Query: 676 AKSLAACYFGS----VRIHYLFFPSPFN 699
A++LA FG +R+ + FN
Sbjct: 555 ARTLAETLFGDEDALIRVDMSEYMERFN 582
>gi|386811802|ref|ZP_10099027.1| ATPase [planctomycete KSU-1]
gi|386404072|dbj|GAB61908.1| ATPase [planctomycete KSU-1]
Length = 826
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 244/613 (39%), Positives = 361/613 (58%), Gaps = 50/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F+RFT+RA K + ++ EA+ + + T+H+LLGL+ E N I + K R
Sbjct: 1 MFDRFTDRARKVMALAREEARRFNHEYIGTEHILLGLVKEGSGVAANVLQNLDIELKKIR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I S G S ++PF+ K+V E A+E +R+ G+N+I EH
Sbjct: 61 LEVEKIVQS------------GSDLVSVGQLPFTPRVKKVLEYAMEEARALGHNYIGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL LGV + + + L E A+ G
Sbjct: 109 LLLGLLREQEGVAAQVLLNLGVKLEDVREEVIGLLGSEAAQGG---------------AN 153
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ G+++ AL+ F DLT +A E +DPVIGR+ I+R+IQ+LCRRTKNNP+LLG
Sbjct: 154 QEKEEKKGKSKTPALDSFGRDLTQQAREHELDPVIGRQDVIERVIQVLCRRTKNNPVLLG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E+GVGKTAI EGLA +VQ +P L +RI++LD+ +++AG K RG+ E R+ ++SE+
Sbjct: 214 EAGVGKTAIVEGLAQAVVQGNIPELLRDRRIVALDLAMMVAGTKYRGQFEERIKAVMSEV 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ ++ILFIDE+HTL+G+G G +G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 274 KRAKNIILFIDELHTLVGAG----GAEG-AIDASNVLKPALSRGEIQCIGATTLDEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQ +++ PS+ + + IL GLR++YEAHH + EA+ +A LS RYI+
Sbjct: 329 IEKDGALERRFQTIVVEPPSKLETIEILKGLRDRYEAHHKVQILDEALESAAELSIRYIT 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDDYWQEIRTVQAMHEV 553
RYLPDKAID++DEA +R ++ R E++ L K D+ A+ +
Sbjct: 389 GRYLPDKAIDVIDEACARVRLKATTQPPDLRHIEEEINKLEKDKDESV-------AIQDF 441
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ +RL+ S + + VV + +A V S +GIP+ +I
Sbjct: 442 ERAARLRDKADKLKKKKESIEKEWRETRAEVE----GVVNSEIVAEVVSKMTGIPITRIE 497
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+ E L+ +EE+L K VI Q+EAV AI++A++RSR GLK+PNRP A+ +F GP+GVGKT
Sbjct: 498 SAEAKRLLRMEEELHKMVISQEEAVKAIAKAIRRSRAGLKNPNRPVASFIFVGPSGVGKT 557
Query: 674 ELAKSLAACYFGS 686
LA+SLA FG
Sbjct: 558 HLARSLAKFLFGE 570
>gi|213691598|ref|YP_002322184.1| ATPase AAA [Bifidobacterium longum subsp. infantis ATCC 15697 = JCM
1222]
gi|384198734|ref|YP_005584477.1| Clp protease [Bifidobacterium longum subsp. infantis ATCC 15697 =
JCM 1222]
gi|213523059|gb|ACJ51806.1| ATPase AAA-2 domain protein [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|320457686|dbj|BAJ68307.1| Clp protease [Bifidobacterium longum subsp. infantis ATCC 15697 =
JCM 1222]
Length = 861
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/615 (40%), Positives = 367/615 (59%), Gaps = 53/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+ +D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N AA G +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGN------AAPNGH-------IPFTPHAKQVLEFSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + + ++G G E + +G
Sbjct: 108 ILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGN-------SGTGDGKGELANAGG 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A ++ ++ ++ L+QF +LTA A+E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 161 VADKQN--KSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIG 218
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 219 EPGVGKTAVVEGLAQKIQAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 278
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 279 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 333
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ +A LS+RYI
Sbjct: 334 IEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQ 393
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQA-MHEVVQ 555
DR LPDKAIDL+DEAG+R I KR L+ PP+ + ++I + A E ++
Sbjct: 394 DRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDEKIAKIAADKDEAIK 442
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWSGIPV 609
G + A + D E +E+ D D VV D IA V S +GIPV
Sbjct: 443 GQDFEK---AAELRDKQE-KLEADRKQKEDSWREGESDVKMVVDEDVIAEVISSTTGIPV 498
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTG
Sbjct: 499 FKLTQAESKKLLSMETELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTG 558
Query: 670 VGKTELAKSLAACYF 684
VGKTELAK+LA F
Sbjct: 559 VGKTELAKTLAEFLF 573
>gi|187251928|ref|YP_001876410.1| ATPase [Elusimicrobium minutum Pei191]
gi|186972088|gb|ACC99073.1| ATPases with chaperone activity, ATP-binding subunit
[Elusimicrobium minutum Pei191]
Length = 839
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/623 (40%), Positives = 364/623 (58%), Gaps = 64/623 (10%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIA-EDRHPNGFLES-GITIDKAR-- 138
+RFTERA K V+ +Q EAK D V T+HLLLGL++ ED L S GI + R
Sbjct: 3 KRFTERAQKTVLIAQEEAKRFNHDYVGTEHLLLGLVSIEDSASYKMLSSLGIGYKRVRAE 62
Query: 139 -EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
E +V I G ++PF+ K+V E ++E S++ G +++ E
Sbjct: 63 IEKMVGI---------------GDTIMLVGEIPFTPRAKKVLEYSLEESQNAGADYVGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKE--------GREPSLAKG 249
H+ LG+ ++G A R+L LG+ + + G +E +P+L +
Sbjct: 108 HLLLGIIREEEGVAVRILDGLGLSPETIREAVMENAGGSAEEEESSHEPEYNEDPTLTR- 166
Query: 250 VRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRR 309
S K +T+ L+++ DLTA A + +DPVIGR+ EI+RIIQIL RR
Sbjct: 167 ---PDFSRKV-------KTKTPLLDEYARDLTALAVKGELDPVIGRDEEIERIIQILARR 216
Query: 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEA 369
TKNNP+L+GE GVGKTAI EG+A RI ++ L +R++SLD+ ++AG K RGE E
Sbjct: 217 TKNNPVLVGEPGVGKTAIVEGIAQRIADGDIEDVLQGRRVLSLDLASVVAGTKYRGEFEQ 276
Query: 370 RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429
R+ LISE++K+ + I+FIDE+HT+IG+G +G+ +D SN+LKP+L RG +QCI +
Sbjct: 277 RLKGLISELEKNKENIIFIDELHTIIGAGAA----EGS-IDASNMLKPALARGAVQCIGA 331
Query: 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489
TT DE+R E D AL RRFQPV++ PS E+ ++IL G++E YEAHH FT +A+ +A
Sbjct: 332 TTFDEYRRHIESDSALERRFQPVVVDPPSVEETIKILNGVKESYEAHHKVIFTEDAVKSA 391
Query: 490 VHLSARYISDRYLPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQ 542
+S RYI+DR LPDKAIDL DEAG+RA I EL +++KE + + K +
Sbjct: 392 AEISDRYITDRSLPDKAIDLFDEAGARARIKNSVTPKELKEKQKEYEAAVREKDEAIEKK 451
Query: 543 EIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVAS 602
E E + R KY + + + ES P V +DIA VAS
Sbjct: 452 EFEKASRAKETQERLR-KY---IEHLKEKWNKEKESQRPE---------VTAEDIALVAS 498
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
W+GIPV ++T E ++ +EE + + ++GQDEAV +S+A++RSR GL +P +P
Sbjct: 499 KWTGIPVTRLTQSETEKILNMEEYMHQSIVGQDEAVHLVSQAIRRSRTGLGNPKKPIGGF 558
Query: 663 LFCGPTGVGKTELAKSLAACYFG 685
LF GPTGVGKTELAK+LA+ FG
Sbjct: 559 LFLGPTGVGKTELAKTLASFMFG 581
>gi|390957373|ref|YP_006421130.1| chaperone ATPase [Terriglobus roseus DSM 18391]
gi|390412291|gb|AFL87795.1| ATPase with chaperone activity, ATP-binding subunit [Terriglobus
roseus DSM 18391]
Length = 830
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 244/619 (39%), Positives = 371/619 (59%), Gaps = 37/619 (5%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLESGITIDKARE 139
+FER+TE+A + + F++ EA G + T+HLLLGL+ ED+ N FL S +++ R+
Sbjct: 1 MFERYTEKARRVIFFARYEASQFGSPYIETEHLLLGLLREDKALTNRFLRSHASVESIRK 60
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ H+T + S++ +P S KRV A E + + I EH+
Sbjct: 61 QIEG--HTTIREKV----------STSVDLPLSNECKRVLAYAAEEAERLSHKHIGTEHL 108
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL + A +L G+ + ++ EL + +E K ++ S +
Sbjct: 109 LLGLLREEKCFAAEILMERGL--------RLPTIREELQRTTQE----KPAQQQGGSKQG 156
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A + G S L +F DLT A ++ +DP++GR+TE+ R+IQILCRRTKNNP+L+GE
Sbjct: 157 RAQQQGGGGEQSMLAEFSRDLTQAAMDQQLDPLVGRDTEVDRVIQILCRRTKNNPVLIGE 216
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA +I EVP FL KR++SLD+ L++AG K RG+ E R+ T++ E+
Sbjct: 217 PGVGKTAIVEGLAQKIADGEVPSFLADKRVLSLDLSLIVAGTKYRGQFEERLKTIMKELM 276
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++ + I+FIDE+HTL+G+G+ +G+ LD +N+LKP+L RGE+QCI +TT E R
Sbjct: 277 ENQNSIVFIDELHTLVGAGSA----EGS-LDAANILKPALSRGEIQCIGATTPAEFRKSI 331
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD++L RRFQ V + P++EDA++I++G+++KYE H +T EAI +V S+RYI D
Sbjct: 332 EKDRSLERRFQAVKVPPPNEEDAIKIIMGIKDKYEKFHAVSYTDEAITFSVTHSSRYIPD 391
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEAG+R ++L + ++ + K + A HE + +R
Sbjct: 392 RFLPDKAIDLIDEAGAR--VKLRQTTLPEELTEVQKRIKFIVHRMENAIANHE-FEKARF 448
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERML 619
D+ + + + L DD +V +DI V S W+G+P+ + +E
Sbjct: 449 YSDEERKERENLRALRDKYHL----DDSSSGIVTKEDIEDVVSRWTGVPINSLKEEEMSK 504
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ +EE+L KRVI Q++A++A+SRA++RSR GLK+P RP + LF GPTGVGKTE+A++L
Sbjct: 505 LMRVEEELHKRVISQEKAISALSRAIRRSRAGLKNPARPIGSFLFLGPTGVGKTEMARTL 564
Query: 680 AACYFGSVRIHYLFFPSPF 698
A FGS + F S F
Sbjct: 565 AQFLFGSDKSLIRFDMSEF 583
>gi|417960485|ref|ZP_12603078.1| ClpC, partial [Candidatus Arthromitus sp. SFB-1]
gi|380330934|gb|EIA22073.1| ClpC, partial [Candidatus Arthromitus sp. SFB-1]
Length = 670
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 241/612 (39%), Positives = 368/612 (60%), Gaps = 50/612 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FE+ TERA K + +S +A LG + T+H+LLGL+ ED L S
Sbjct: 1 MFEKLTERARKVISYSGDDALKLGHGFIGTEHILLGLLREDGPAQKILNS---------- 50
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+++ ++ + G+ +++P + TK+V E++++ ++ G+N ++PEHI
Sbjct: 51 -FDVYYDDIFKEIRTILSPGEIEIKNSEIPLTPRTKKVIESSIDEAKKLGHNHVSPEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L + DG A ++L + GV V + ++ L + + + P + +N
Sbjct: 110 LAIINEPDGVAYKILDKKGVSVVKIWNQTINALN--VTIDVQNPHEKEQQLKN------- 160
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L +P L+Q DLT A+E +DPVIGR+TE QR+++ILCRR KNNP L+G+
Sbjct: 161 -LPTP------VLDQHGRDLTKLANEGKLDPVIGRDTETQRVLEILCRRIKNNPCLIGDP 213
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAI EGLA +I++ +P L +KR+++LD+ L+AG K RGE E R+ ++ EI++
Sbjct: 214 GVGKTAIIEGLAQKIIEGNIPEILKNKRVITLDLSSLIAGTKYRGEFEERLKKIMEEIKR 273
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
S ++ILFIDE+HT+IG+G G +G +D SN+LKP+L RGE+QCI +TT DE+R E
Sbjct: 274 SRNIILFIDEIHTIIGAG----GAEG-AIDASNILKPALARGEIQCIGATTIDEYRKYIE 328
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP++ + + IL+G+R+KYE HH K T EAI AV LS R+I DR
Sbjct: 329 KDTALERRFQPIFVGEPNENETIDILIGIRDKYETHHKVKITDEAIKFAVSLSVRFIPDR 388
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
YLPDKAIDL+DEA ++ + L+ P + E + E + L+
Sbjct: 389 YLPDKAIDLIDEASAKIRVRN-----------LTVPIEVKEIEEEIAKVGKEKQEAITLE 437
Query: 561 YDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPVQQITA 614
+ AS+ D + + E L ++ + D+ ++ ++A+V + W+ IPV+++T
Sbjct: 438 DFEKAASLRDKEQKLKE-RLENSKEKWKVEKYDKEFILTEQELASVVASWTKIPVEKLTQ 496
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ L++ L+ RVI Q+EAV +++RAVKR RVGLKDP RP + +F GPTGVGKTE
Sbjct: 497 TESEKLLKLDDILRSRVIDQNEAVISVARAVKRGRVGLKDPKRPIGSFIFLGPTGVGKTE 556
Query: 675 LAKSLAACYFGS 686
L K+LA FGS
Sbjct: 557 LCKALADAVFGS 568
>gi|415712066|ref|ZP_11464562.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 55152]
gi|415715746|ref|ZP_11466169.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 1400E]
gi|388057293|gb|EIK80125.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 55152]
gi|388058193|gb|EIK80991.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 1400E]
Length = 829
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 245/617 (39%), Positives = 370/617 (59%), Gaps = 55/617 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA+SL + + T+H+LLGLI E G+ +D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARSLQHNYIGTEHILLGLIREGEGIAAKALNAKGVELDDTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + + + S + +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQIKEMIGTGT-------------VSPSGHIPFTPHAKQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGE--LAKEGREPSLAK--GVRENS 254
I LGL +G +VL ++ VD+ L + A+ ++G + ++G++ LA GV++
Sbjct: 108 ILLGLIREGEGVGTQVLIKMEVDLGDLRSTAMDLIRGNSGIPEDGQKGDLANAGGVQDKR 167
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
++ ++ L+QF +LT A + +DPVIGR EI+R++ +L RRTKNNP
Sbjct: 168 -----------NQSGSALLDQFGRNLTTEAEQGKLDPVIGRSKEIERVMVVLSRRTKNNP 216
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA +IV +VP L K++ SLD+G ++AG++ RG+ E R+ +
Sbjct: 217 VLIGEPGVGKTAVVEGLAQKIVAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKV 276
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE
Sbjct: 277 LKEIKTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDE 331
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + EPS + + IL GLR +YE HH+ T A+ +A +SA
Sbjct: 332 YRKYIEKDAALERRFQPIQVQEPSIAETIEILKGLRARYENHHHVTITDAALQSAAEMSA 391
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI DR LPDKAIDL+DEAG+R I KR L++PP+ +E+ + +
Sbjct: 392 RYIQDRNLPDKAIDLIDEAGARLRI---KR--------LTEPPE--LKELDSKISKLSEK 438
Query: 555 QGSRLKYDDV--VASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGI 607
+ +K D A + D E + E + + VV D IA+V S +GI
Sbjct: 439 KDEAIKNQDFEKAADLRDEQEKLEEERKNKEQAWREGESNVNMVVDEDVIASVVSNTTGI 498
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T E L+G+E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GP
Sbjct: 499 PVVKLTQAESKKLLGMEAELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPSGSFIFAGP 558
Query: 668 TGVGKTELAKSLAACYF 684
TGVGKTELAK+LA F
Sbjct: 559 TGVGKTELAKTLAQFLF 575
>gi|261337923|ref|ZP_05965807.1| negative regulator of genetic competence ClpC/MecB [Bifidobacterium
gallicum DSM 20093]
gi|270277412|gb|EFA23266.1| negative regulator of genetic competence ClpC/MecB [Bifidobacterium
gallicum DSM 20093]
Length = 856
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 246/617 (39%), Positives = 363/617 (58%), Gaps = 58/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+T+D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASMGVTLDDTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSS-AAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V + GK ++ + +PF+ K+V E ++ + G+++I E
Sbjct: 61 KQVEEMI--------------GKGTAAPSGHIPFTPHAKQVLELSLREALQLGHSYIGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI LGL +G +VL ++ VD+ L + + ++G A G + ++
Sbjct: 107 HILLGLIREGEGVGTQVLIKMDVDLGDLRSATIDLIRGN----------AGGEDKGDLAN 156
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+T ++ L+QF +LTA A E +DPVIGR +EI+R++ +L RRTKNNP+L+
Sbjct: 157 AGGVSDKARQTGSAILDQFGRNLTAEAQEGKLDPVIGRSSEIERVMVVLSRRTKNNPVLI 216
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
G+ GVGKTA+ EGLA +IV +VP L K++ SLD+G ++AG++ RG+ E R+ ++ E
Sbjct: 217 GDPGVGKTAVVEGLAQKIVAGDVPETLKDKQVYSLDLGSMVAGSRYRGDFEERLKKVLKE 276
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 277 IKARGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRK 331
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQP+ ++EPS + + IL GLR +YE HH+ T AI +A LSARYI
Sbjct: 332 YIEKDAALERRFQPIQVNEPSIAETIEILKGLRARYENHHHVTITDAAIQSAAELSARYI 391
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
DR LPDKAIDL+DEAG+R I KR L+ PP+ + + + E +
Sbjct: 392 QDRRLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDAKVAKVAKEKDEAI 440
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDEPA----------VVGPDDIAAVASLWSGI 607
+ + + A + D E L + + E A VV D IA V S +GI
Sbjct: 441 KDQEFEKAAELRDRQE-----KLEAERKEKEQAWREGGSDVKMVVDEDVIAEVISQSTGI 495
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLK P RP + +F GP
Sbjct: 496 PVVKLTQAESKKLLNMEAELHKRIIGQDEAVSALSRSIRRTRVGLKGPKRPAGSFIFAGP 555
Query: 668 TGVGKTELAKSLAACYF 684
TGVGKTELAK+LA F
Sbjct: 556 TGVGKTELAKALAQFLF 572
>gi|206889441|ref|YP_002248100.1| ClpC ATPase [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741379|gb|ACI20436.1| ClpC ATPase [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 816
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/613 (40%), Positives = 358/613 (58%), Gaps = 58/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FE+FTE+ K +++++ EA+ + + T+HLLL ++ E E I + R+
Sbjct: 1 MFEKFTEKGRKIILYAREEAEKRNSEFLDTEHLLLAILRE--------EESIPVAIMRK- 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ I + + + ++PFS K+V E A+E +R G+ +I EH+
Sbjct: 52 -IGIAPENVRYEIEKRVTNEGNLLTYGEIPFSPRAKKVLENAIEEARLLGHPYIGSEHLF 110
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVS-------RLQGELAKEGREPSLAKGVREN 253
LGL ++G AG+VL+ LG+ N LAA ++ QG +E R
Sbjct: 111 LGLIKEEEGIAGKVLRTLGI--NLLAARQLTINFSIRPHFQGTPQREKR----------- 157
Query: 254 SISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN 313
+T AL++F DLT A E +DPVIGRE EI+R+IQIL RR KNN
Sbjct: 158 -------------KTNTPALDEFGRDLTLLALEGKLDPVIGREDEIERVIQILGRRIKNN 204
Query: 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373
P+++GE GVGKTAI EGLA +I++ +VP LL KRI++LD+G L+AG K RG+ E R+
Sbjct: 205 PVIIGEPGVGKTAIVEGLAQKIIEGDVPDILLGKRIIALDLGALIAGTKYRGQFEERLKA 264
Query: 374 LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433
+I E +S ++ILFIDE+HT+IG+G +G+ +D SN+LKP+L RGE+QCI +TT
Sbjct: 265 VIREATQSENIILFIDELHTIIGAGAA----EGS-VDASNMLKPALARGEMQCIGATTPQ 319
Query: 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493
E+R EKD AL RRFQPV I + E + IL G+REKYE+HH K T EA+ AAV LS
Sbjct: 320 EYRKYIEKDGALERRFQPVYIQPTTVETTIEILRGIREKYESHHKVKITDEAVEAAVKLS 379
Query: 494 ARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEV 553
RYI+DRYLPDKAID+VDE SR I+L + Q+ L +E +H++
Sbjct: 380 DRYITDRYLPDKAIDVVDETASR--IKLRRSIMPQELKSLEFELAKISKEKSLYIKLHDL 437
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDD--DEPAVVGPDDIAAVASLWSGIPVQQ 611
+ KY++ D + + E++ D E +V DDI+ S +GIP+ +
Sbjct: 438 SSAQKAKYEE------DKLKRIYETNYKKWKDSMYKEVPLVTADDISYTVSKMTGIPLYK 491
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ E L+ +EE L +R++GQDEA+ ++ +A++RSR GLK NRP + F GPTGVG
Sbjct: 492 LEQTESEKLLQMEEILHQRIVGQDEAIKSVCKAIRRSRAGLKTKNRPIGSFFFLGPTGVG 551
Query: 672 KTELAKSLAACYF 684
KTELAK LA F
Sbjct: 552 KTELAKVLAEFMF 564
>gi|306823273|ref|ZP_07456649.1| ATP-dependent Clp protease ATP-binding subunit ClpC
[Bifidobacterium dentium ATCC 27679]
gi|309801911|ref|ZP_07696026.1| negative regulator of genetic competence ClpC/MecB [Bifidobacterium
dentium JCVIHMP022]
gi|304553905|gb|EFM41816.1| ATP-dependent Clp protease ATP-binding subunit ClpC
[Bifidobacterium dentium ATCC 27679]
gi|308221467|gb|EFO77764.1| negative regulator of genetic competence ClpC/MecB [Bifidobacterium
dentium JCVIHMP022]
Length = 863
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 239/612 (39%), Positives = 362/612 (59%), Gaps = 45/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+++D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVSLDDTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N S +PF+ ++V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGNA-------------SPNGHIPFTPHARQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ V++ L + + ++G ++G + ++
Sbjct: 108 ILLGLIHEGEGVGTQVLIKMDVNLGELRSATIDLIRGNSGG-------SQGEGKGDLANA 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ ++ L+QF +LTA A+ +DPVIGR +EI+R++ +L RRTKNNP+L+G
Sbjct: 161 GGVQDRRNQSGSAILDQFGRNLTAEAASGKLDPVIGRSSEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKINAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLRE+YE HH+ T A+ +A LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPTIAETIEILKGLRERYENHHHVTITDGALQSAAELSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I L+ PP+ + + + E Q +
Sbjct: 396 DRHLPDKAIDLIDEAGARLRIRR-----------LTAPPELKELDAKVAKLAEEKDQAIK 444
Query: 559 LKYDDVVASMGDTSEIV------VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + A + D E + ESS + D VV D IA V S +GIPV ++
Sbjct: 445 DQDFEKAAELRDRQEKLEAERKEKESSWREG-ESDVKMVVDEDVIAEVISQTTGIPVFKL 503
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTGVGK
Sbjct: 504 TQAESKKLMSMESELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPSGSFIFAGPTGVGK 563
Query: 673 TELAKSLAACYF 684
TELAK+LA F
Sbjct: 564 TELAKTLAEFLF 575
>gi|284043144|ref|YP_003393484.1| ATPase AAA [Conexibacter woesei DSM 14684]
gi|283947365|gb|ADB50109.1| ATPase AAA-2 domain protein [Conexibacter woesei DSM 14684]
Length = 868
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/616 (41%), Positives = 368/616 (59%), Gaps = 50/616 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFTERA + V+ +Q EA++L + + T+H+LLGL+ E+ LES IT+++ R
Sbjct: 1 MFERFTERARQVVVLAQEEARTLKHNYIGTEHILLGLLREEEGLAARVLESLDITVERVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
VV I S G+ +S ++PF+ K+V E A+ + S G+N+I EH
Sbjct: 61 AQVVRIVGS------------GEEVTSG-QIPFTPRAKKVLELALREALSLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL ++G A R+L D + + L G GR + +
Sbjct: 108 ILLGLVRENEGVAARILLDFDADSEKIRNEVIRMLSG---PGGRRQGASS---GSGAGAG 161
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A + G+ + L+QF +LT AS+ +DPV+GRETE++RI+QIL RR KNNP+L+G
Sbjct: 162 AAGQQGEGKKSSKLLDQFGRNLTKLASDGKLDPVVGRETEVERIMQILSRRQKNNPVLIG 221
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA RI A+VP L K+I +LD+ L+AG+K RGE E R+ ++ EI
Sbjct: 222 EPGVGKTAVVEGLAQRITNADVPELLKGKQIYTLDLAALVAGSKYRGEFEERLKKVMKEI 281
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+H L+G+G +D +++LKP+L RGELQ I +TT DE+R
Sbjct: 282 TQRGDIILFIDELHNLVGAGAA-----EGAIDAASILKPALARGELQTIGATTLDEYRKY 336
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQ + + PS ++ +IL GLR++YE HH T EA+ AA L+ RYIS
Sbjct: 337 LERDAALERRFQQIRVDPPSTDETFQILQGLRDRYEQHHKVNITDEALTAAADLADRYIS 396
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP--DDYWQEIRTVQAMHE-VVQ 555
DR+LPDKAIDL+DEA +R I+ ++ PP D +EI T + E ++
Sbjct: 397 DRFLPDKAIDLIDEAAARMRIK-----------SMTSPPVYRDLEEEIETTRRNKEAAIE 445
Query: 556 GSRLKYDDVVASMGDTSEIV------VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ A++ D + +E S + P+ +G ++IA + S+W+GIPV
Sbjct: 446 AQEFEK---AANLRDAERRLTQKKRELEEQWESGESGERPS-IGEEEIADIVSMWTGIPV 501
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E++L KRVIGQ AV IS+A++RSR GLKDP RPT + +F GP+G
Sbjct: 502 FKLTEAETAKLMRMEDELHKRVIGQQAAVDVISKAIRRSRAGLKDPKRPTGSFVFLGPSG 561
Query: 670 VGKTELAKSLAACYFG 685
VGKTELA++LA FG
Sbjct: 562 VGKTELARTLAEFLFG 577
>gi|239916715|ref|YP_002956273.1| ATPase with chaperone activity, ATP-binding subunit [Micrococcus
luteus NCTC 2665]
gi|281414827|ref|ZP_06246569.1| ATPase with chaperone activity, ATP-binding subunit [Micrococcus
luteus NCTC 2665]
gi|239837922|gb|ACS29719.1| ATPase with chaperone activity, ATP-binding subunit [Micrococcus
luteus NCTC 2665]
Length = 851
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 257/616 (41%), Positives = 363/616 (58%), Gaps = 49/616 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFT+RA + V+ +Q EA+ L + T+H+LLGLI E G+
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHSYIGTEHILLGLIHEG--------EGVAAKALESM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+S+ D Q P +PF+ K+V E ++ + G+N+I EHI
Sbjct: 53 DISLGAVREKVQEDIGQGQQNP---PGHIPFTPRAKKVLELSLREALQLGHNYIGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLA-KGVRENSISGKT 259
LGL +G A +VL +LG D+N + + L G A GV + +G+
Sbjct: 110 LGLIREGEGVAAQVLVKLGADLNRVRQTVIQLLSGYQGGGQGGKETAGAGVGQGGEAGQN 169
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A + L+QF +LTA A + +DPVIGR E++R++Q+L RRTKNNP+L+GE
Sbjct: 170 AG--------SVVLDQFGRNLTAAAHDGKLDPVIGRAGEMERVMQVLSRRTKNNPVLIGE 221
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTA+ EGLA I + +VP L K++ SLD+G L+AG++ RG+ E R+ ++ EI+
Sbjct: 222 PGVGKTAVVEGLAQAIERGDVPETLKDKQLYSLDLGSLVAGSRYRGDFEERLKKVLKEIR 281
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 282 TRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKHI 336
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQP+ ++EPS EDA IL GLR++YEAHH T A+ AA L+ RY+SD
Sbjct: 337 EKDAALERRFQPIQVAEPSVEDATEILRGLRDRYEAHHKVSITDGALKAAAGLADRYVSD 396
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE-VVQG 556
R+LPDKAIDL+DEAG+R I ++ PP+ Y I V+ E + G
Sbjct: 397 RHLPDKAIDLIDEAGARLRIRR-----------MTVPPEIKAYESRIAEVRTQKEAAIDG 445
Query: 557 SRLKYDDVVASMGDTSEIV------VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ A + D + + E + + +D D A V D IA V S +GIPV
Sbjct: 446 QDFEG---AARLRDQEQQLEDERREKEQAWRTGADAD-VATVDEDLIAEVLSKSTGIPVF 501
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++TA+E L +E++L +RVIGQDEA+ ++SRA++R+R GLKDPNRP+ + +F GPTGV
Sbjct: 502 KLTAEETDRLRTMEDELHRRVIGQDEAIKSLSRAIRRTRAGLKDPNRPSGSFIFAGPTGV 561
Query: 671 GKTELAKSLAACYFGS 686
GKTELAKSLA FG
Sbjct: 562 GKTELAKSLAEFLFGD 577
>gi|375089120|ref|ZP_09735456.1| hypothetical protein HMPREF9703_01538 [Dolosigranulum pigrum ATCC
51524]
gi|374560921|gb|EHR32274.1| hypothetical protein HMPREF9703_01538 [Dolosigranulum pigrum ATCC
51524]
Length = 831
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 260/636 (40%), Positives = 372/636 (58%), Gaps = 55/636 (8%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVV 142
E FT A K ++ +++EA+ V T+HLLLGLI E SGI RE V
Sbjct: 3 ELFTPNAKKVLLLAEKEARYYSHQAVGTEHLLLGLIQET--------SGIAGKVLRELDV 54
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTK--RVFEAAVEYSRSRGYNFIAPEHIA 200
++ S ++ Q K A K P S + + A + +R + EH+
Sbjct: 55 TM-ESIRDEIEQFTTFQAKE-EGALKQPLQYSPRAHEIVTFAADEARKMQRKTVGTEHLL 112
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +D A ++L+ +G+D+ A + + E K+ R S + V++ ++G++A
Sbjct: 113 LGLLRNEDILASQILQNIGIDLPTARAAVLKKFGIEEPKQRR--SKKQSVKK--VTGQSA 168
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
K L+ DLT +A E +DP+IGRE E++RIIQIL RRTKNNP+L+GE
Sbjct: 169 PPKG-----TPTLDALARDLTQQAQEGKLDPIIGREREVRRIIQILSRRTKNNPVLVGEP 223
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEG+A +IV EVP L KR+M+LDMG L+AG K RGE E R+ +I+EI
Sbjct: 224 GVGKTAIAEGIAQQIVSGEVPPILQGKRLMTLDMGSLVAGTKYRGEFEERMKKIINEIYH 283
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
G+VILFIDE+HTLIG+G+ +D SNLLKP+L RGELQ I +TTQDE++ E
Sbjct: 284 DGNVILFIDELHTLIGAGSA-----EGAVDASNLLKPALARGELQTIGATTQDEYQKHIE 338
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
+D AL RRF V I +P+ E+ + IL G++ YE HH+ F E + AAV LS+RYI+DR
Sbjct: 339 RDAALERRFASVKIEQPTPEETIAILEGIKPAYEQHHDVTFDEETLTAAVKLSSRYITDR 398
Query: 501 YLPDKAIDLVDEAGSRAHIELFKR-----KKEQQTCILSKPPDDYWQEIRTVQAM----H 551
+LPDKAIDL+DEA ++ I+ + K+ Q+ +L++ + QE QA
Sbjct: 399 FLPDKAIDLIDEAAAKVIIDNSQSTDSIGKERQRLQLLNQQKEQAIQEQNFEQAAEYRHQ 458
Query: 552 EVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
E+ Q ++K +++ + S + +V P+D+A V S W+GIPV +
Sbjct: 459 EMKQQRKVKR-------------LLQKEQAAGS---QQQLVTPEDVADVVSQWTGIPVNE 502
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ +E L+ LE L +RVIGQDEAV A+++A++R+R GLKDPNRP + LF GPTGVG
Sbjct: 503 LQQEESERLLNLETLLHERVIGQDEAVKAVAKAIRRARSGLKDPNRPIGSFLFLGPTGVG 562
Query: 672 KTELAKSLAACYFGS----VRIHYLFFPSPFNSVKV 703
KTELAK+LA F S +R+ F N+ ++
Sbjct: 563 KTELAKTLAEAMFSSEDHLIRVDMSEFMEKHNTSRL 598
>gi|171743328|ref|ZP_02919135.1| hypothetical protein BIFDEN_02459 [Bifidobacterium dentium ATCC
27678]
gi|171278942|gb|EDT46603.1| ATPase family associated with various cellular activities (AAA)
[Bifidobacterium dentium ATCC 27678]
Length = 863
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 239/612 (39%), Positives = 362/612 (59%), Gaps = 45/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+++D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVSLDDTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N S +PF+ ++V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGNA-------------SPNGHIPFTPHARQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ V++ L + + ++G ++G + ++
Sbjct: 108 ILLGLIHEGEGVGTQVLIKMDVNLGELRSATIDLIRGNSGG-------SQGEGKGDLANA 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ ++ L+QF +LTA A+ +DPVIGR +EI+R++ +L RRTKNNP+L+G
Sbjct: 161 GGVQDRRNQSGSAILDQFGRNLTAEAASGKLDPVIGRSSEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKINAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLRE+YE HH+ T A+ +A LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPTIAETIEILKGLRERYENHHHVTITDGALQSAAELSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I L+ PP+ + + + E Q +
Sbjct: 396 DRHLPDKAIDLIDEAGARLRIRR-----------LTAPPELKELDAKVAKLAEEKDQAIK 444
Query: 559 LKYDDVVASMGDTSEIV------VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + A + D E + ESS + D VV D IA V S +GIPV ++
Sbjct: 445 DQDFEKAAELRDRQEKLEAERKEKESSWREG-ESDVKMVVDEDVIAEVISQTTGIPVFKL 503
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTGVGK
Sbjct: 504 TQAESKKLMSMESELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPSGSFIFAGPTGVGK 563
Query: 673 TELAKSLAACYF 684
TELAK+LA F
Sbjct: 564 TELAKTLAEFLF 575
>gi|333396625|ref|ZP_08478442.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus coryniformis subsp. coryniformis KCTC
3167]
Length = 829
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 253/607 (41%), Positives = 355/607 (58%), Gaps = 40/607 (6%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAREAVV 142
FT A ++ +Q +AK V T+HLLL L+ E G + IT D RE +
Sbjct: 5 FTPSAKNVLVLAQEQAKYFRHHAVGTEHLLLALVIETDGIAGKTLRQLSITDDDIREEIE 64
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
+ +T S +P++ K++ A + ++ G I EHI LG
Sbjct: 65 RFTGYGASAET----------QSDTYLPYAPKAKQILSYAGDEAKRMGAMKIGTEHILLG 114
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
L DD A R+L LG+ ++ + + +L G + AK R N+ G+ A
Sbjct: 115 LLREDDILAARILTNLGLSLSKTRQIILKKL-------GVTDTAAK--RRNAPRGRQAQG 165
Query: 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322
S T L+ DLT A E +DPV+GR E++R+IQ+L RRTKNNP+L+GE GV
Sbjct: 166 NSSEGT--PTLDSLARDLTQLARENQMDPVVGRSKEVRRLIQVLSRRTKNNPVLIGEPGV 223
Query: 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG 382
GKTAIAEGLA +I+ +VP + KR+M LDMG L+AG K RGE E R+ +I EI K G
Sbjct: 224 GKTAIAEGLAQKIIAGDVPDDMAKKRLMMLDMGSLVAGTKYRGEFEDRLKKVIDEIYKDG 283
Query: 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD 442
VILFIDE+HTLIG+G G +G +D SN+LKP+L RGE+Q I +TT DE++ EKD
Sbjct: 284 HVILFIDELHTLIGAG----GAEG-AIDASNILKPALARGEMQVIGATTLDEYQKYIEKD 338
Query: 443 KALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502
AL RRF + ++EP+Q +A ILLGLR +YE HH T EA++ AV LS+RYISDR+L
Sbjct: 339 AALERRFATIQVNEPTQAEAEEILLGLRSRYEEHHGVTITDEAVHEAVVLSSRYISDRFL 398
Query: 503 PDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV---QGSRL 559
PDKAIDL+DE+ + ++ +K + SK + Q ++ +A E + + +
Sbjct: 399 PDKAIDLIDESAASVRLDAASKKTPE-----SKLETELNQLVKDKEAAIEAQDFEKAASI 453
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERML 619
+ ++ M ++ E + + + V PDDIA V S W+G+P+ Q+ E
Sbjct: 454 RENE----MALKDKLATEQAAAPTNGVRKDVKVTPDDIATVVSQWTGVPLTQLQKSETER 509
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ LE+ L KRVIGQ+EAV+A+SRA++R+R GLKDP RP + +F GPTGVGKTELAK+L
Sbjct: 510 LINLEKVLHKRVIGQEEAVSAVSRAIRRARSGLKDPQRPIGSFMFLGPTGVGKTELAKAL 569
Query: 680 AACYFGS 686
A FGS
Sbjct: 570 AEAMFGS 576
>gi|269793011|ref|YP_003317915.1| ATPase AAA-2 domain-containing protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100646|gb|ACZ19633.1| ATPase AAA-2 domain protein [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 819
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 259/634 (40%), Positives = 379/634 (59%), Gaps = 63/634 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAR 138
+++ FTER K + + REA LG +++ T+HLLLGL+AE +G+ +D+ R
Sbjct: 1 MWQFFTERGKKVIQLAHREALRLGHEVIGTEHLLLGLLAEGEGVAAQVLKMAGLDLDEIR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V + G+P A +P S KR + A+ +R+ N++ EH
Sbjct: 61 EQVERV------------VGVGEPKEKAVDLPLSPRAKRALDLAMREARNMAVNYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A ++L R+G+D + S L G + + ++P +G E G
Sbjct: 109 ILLGLLAEGEGVAFQILIRMGLDPVKVRQEVQSYLSG-TSSDIQDPR--RGSDEQDRKGA 165
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A+ K+P L+Q +DL+ A +DPVIGR EIQR++Q+L RRTKNNP+L+G
Sbjct: 166 QAS-KTP------TLDQLGMDLSEMAKSGELDPVIGRAKEIQRLVQVLSRRTKNNPVLIG 218
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTAI EGLA RI ++P L KR++ L++G L+AG K RGE E R+ L+ E+
Sbjct: 219 DPGVGKTAIVEGLAQRIASGDIPEVLKGKRVVQLNVGNLVAGTKYRGEFEERMRKLVKEL 278
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
++S VILFIDE+HT++G+G G +G +D +N+LKPSL RGE Q I +TT +E+R
Sbjct: 279 KESRSVILFIDEIHTIVGAG----GAEGA-VDAANILKPSLARGEFQVIGATTMEEYRKY 333
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS+ED V+IL GLR++YEAHH K + +A+ AA LS R+I+
Sbjct: 334 IEKDAALERRFQPIQVEEPSEEDTVKILEGLRDRYEAHHRVKISDDALVAAARLSKRFIT 393
Query: 499 DRYLPDKAIDLVDEAGSRAHI----------ELFKR----KKEQQTCILSKPPDDYWQEI 544
+R+LPDKAIDL+DEAG+RA + EL +R +KE+++ +++ QE
Sbjct: 394 ERFLPDKAIDLIDEAGARARLKTMEAPEDLKELERRLEEVRKEKESAVMA-------QEF 446
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW 604
A+ + R Y+++ D S + +EP V G +D+A + S W
Sbjct: 447 EKAAALRD---EERRMYEEIEQLRRDWQ---------SRRNQEEPVVTG-EDVATIVSEW 493
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+G+PV Q+T +E L+ +EE++ R++GQ+EAV A++RA++R R GLKDP RP + LF
Sbjct: 494 TGVPVVQLTEEEAKRLLRMEEEIHSRLVGQEEAVNAVARAIRRGRSGLKDPRRPVGSFLF 553
Query: 665 CGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698
GPTGVGKTELA+ LA FGS F S F
Sbjct: 554 LGPTGVGKTELARRLAWFLFGSEDAMIRFDMSEF 587
>gi|415709890|ref|ZP_11463469.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 6420B]
gi|388055892|gb|EIK78777.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 6420B]
Length = 867
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/618 (40%), Positives = 372/618 (60%), Gaps = 58/618 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA+SL + + T+H+LLGLI E G+ ++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARSLQHNYIGTEHILLGLIREGEGIAAKALSSKGVDLEGTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ +G S A +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQV------------EEMIGKG-TVSPAGHIPFTPHAKQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + V ++G+ A G E KG N+ S +
Sbjct: 108 ILLGLIREGEGVGTQVLIKMEVDLGDLRSTTVDLIRGDNAPNGSE----KGELANAGSVQ 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+S ++ L+QF +LT A E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 164 DKRNQSG----SALLDQFGRNLTFEAQEGKLDPVIGRSEEIERVMVVLSRRTKNNPVLIG 219
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +IV+ +VP L +K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 220 EPGVGKTAVVEGLAQKIVEGDVPETLKNKQVYSLDLGSMIAGSRYRGDFEERLKKVLKEI 279
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 280 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 334
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ ++ LS RYI
Sbjct: 335 IEKDAALERRFQPIQVPEPTIAETIEILKGLRSRYENHHHVTITDGALQSSAELSDRYIQ 394
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I KR L++PP+ +E+ A +
Sbjct: 395 DRHLPDKAIDLIDEAGARLRI---KR--------LTQPPE--LKELNHKIAKISEKKDEA 441
Query: 559 LKYDDV--VASMGDTSEIVVESSLPSASDDDEPA----------VVGPDDIAAVASLWSG 606
+K D A++ D E L + + + E A VV D IA+V S +G
Sbjct: 442 IKQQDFEEAANLRDDQE-----KLENEAAEKEKAWREGESNVKMVVDEDMIASVVSSTTG 496
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E +L KR++GQDEAV+A++R+++R+RVGLKDP RP+ + +F G
Sbjct: 497 IPVVKLTQAESQKLLQMESELHKRIVGQDEAVSALARSIRRARVGLKDPKRPSGSFIFAG 556
Query: 667 PTGVGKTELAKSLAACYF 684
PTGVGKTELAK+LA F
Sbjct: 557 PTGVGKTELAKALANFLF 574
>gi|289763775|ref|ZP_06523153.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis GM 1503]
gi|289711281|gb|EFD75297.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis GM 1503]
Length = 686
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/612 (41%), Positives = 363/612 (59%), Gaps = 47/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTG----------- 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+S + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 157 GRGGESGSPSTSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKTLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFG 685
EL+K+LA FG
Sbjct: 561 ELSKALANFLFG 572
>gi|15843209|ref|NP_338246.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Mycobacterium
tuberculosis CDC1551]
gi|13883563|gb|AAK48060.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Mycobacterium
tuberculosis CDC1551]
Length = 848
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/613 (41%), Positives = 360/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA K V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARKVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKTLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|296392867|ref|YP_003657751.1| ATPase AAA [Segniliparus rotundus DSM 44985]
gi|296180014|gb|ADG96920.1| ATPase AAA-2 domain protein [Segniliparus rotundus DSM 44985]
Length = 842
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 373/616 (60%), Gaps = 53/616 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQGPSV-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D++ + + L G + G+EP A G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLSRVRQQVIQLLSG-YSGGGKEPEAA------GAGGR 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LT A + +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 161 GGEAGTP--STSLVLDQFGRNLTRAALDGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 218
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 219 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 278
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 279 NSRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 333
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 334 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYEAHHRVSITDSALAAAASLADRYIN 393
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R I ++ PPD ++ ++I + E
Sbjct: 394 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIANTRRQKE---- 438
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D A + DT + +V + D D A V ++IA V + W+GIPV
Sbjct: 439 SAIDEQDFEKAAGLRDTEKKLVAQRAEREKQWRSGDMDVVAEVDEEEIAEVLANWTGIPV 498
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ +AVAA+++A++R+R GLKDP RP+ + +F GP+G
Sbjct: 499 FKLTEEETARLLRMEDELHKRIIGQRDAVAAVAKAIRRTRAGLKDPKRPSGSFIFAGPSG 558
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 559 VGKTELSKALANFLFG 574
>gi|297243559|ref|ZP_06927490.1| ATP-binding subunits of Clp [Gardnerella vaginalis AMD]
gi|296888310|gb|EFH27051.1| ATP-binding subunits of Clp [Gardnerella vaginalis AMD]
Length = 873
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/618 (40%), Positives = 372/618 (60%), Gaps = 58/618 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA+SL + + T+H+LLGLI E G+ ++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARSLQHNYIGTEHILLGLIREGEGIAAKALSSKGVDLEGTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ +G S A +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQV------------EEMIGKG-TVSPAGHIPFTPHAKQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + V ++G+ A G E KG N+ S +
Sbjct: 108 ILLGLIREGEGVGTQVLIKMEVDLGDLRSTTVDLIRGDNAPNGSE----KGELANAGSVQ 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+S ++ L+QF +LT A E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 164 DKRNQSG----SALLDQFGRNLTFEAQEGKLDPVIGRSEEIERVMVVLSRRTKNNPVLIG 219
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +IV+ +VP L +K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 220 EPGVGKTAVVEGLAQKIVEGDVPETLKNKQVYSLDLGSMIAGSRYRGDFEERLKKVLKEI 279
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 280 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 334
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ ++ LS RYI
Sbjct: 335 IEKDAALERRFQPIQVPEPTIAETIEILKGLRSRYENHHHVTITDGALQSSAELSDRYIQ 394
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I KR L++PP+ +E+ A +
Sbjct: 395 DRHLPDKAIDLIDEAGARLRI---KR--------LTQPPE--LKELNHKIAKISEKKDEA 441
Query: 559 LKYDDV--VASMGDTSEIVVESSLPSASDDDEPA----------VVGPDDIAAVASLWSG 606
+K D A++ D E L + + + E A VV D IA+V S +G
Sbjct: 442 IKQQDFEEAANLRDDQE-----KLENEAAEKEKAWREGESNVKMVVDEDMIASVVSSTTG 496
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E +L KR++GQDEAV+A++R+++R+RVGLKDP RP+ + +F G
Sbjct: 497 IPVVKLTQAESQKLLQMESELHKRIVGQDEAVSALARSIRRARVGLKDPKRPSGSFIFAG 556
Query: 667 PTGVGKTELAKSLAACYF 684
PTGVGKTELAK+LA F
Sbjct: 557 PTGVGKTELAKALANFLF 574
>gi|283783197|ref|YP_003373951.1| negative regulator of genetic competence ClpC/MecB [Gardnerella
vaginalis 409-05]
gi|283441539|gb|ADB14005.1| negative regulator of genetic competence ClpC/MecB [Gardnerella
vaginalis 409-05]
Length = 862
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/618 (40%), Positives = 372/618 (60%), Gaps = 58/618 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA+SL + + T+H+LLGLI E G+ ++ R
Sbjct: 1 MFERFTDRARRVIVLAQEEARSLQHNYIGTEHILLGLIREGEGIAAKALSSKGVGLEGTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ +G S A +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQV------------EEMIGKG-TVSPAGHIPFTPHAKQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + V ++G+ A G E KG N+ S +
Sbjct: 108 ILLGLIREGEGVGTQVLIKMEVDLGDLRSTTVDLIRGDNAPNGSE----KGELANAGSVQ 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+S ++ L+QF +LT A E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 164 DKRNQSG----SALLDQFGRNLTFEAQEGKLDPVIGRSEEIERVMVVLSRRTKNNPVLIG 219
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +IV+ +VP L +K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 220 EPGVGKTAVVEGLAQKIVEGDVPETLKNKQVYSLDLGSMIAGSRYRGDFEERLKKVLKEI 279
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 280 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 334
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ ++ LS RYI
Sbjct: 335 IEKDAALERRFQPIQVPEPTIAETIEILKGLRSRYENHHHVTITDGALQSSAELSDRYIQ 394
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I KR L++PP+ +E+ A +
Sbjct: 395 DRHLPDKAIDLIDEAGARLRI---KR--------LTQPPE--LKELNHKIAKISEKKDEA 441
Query: 559 LKYDDV--VASMGDTSEIVVESSLPSASDDDEPA----------VVGPDDIAAVASLWSG 606
+K D A++ D E L + + + E A VV D IA+V S +G
Sbjct: 442 IKQQDFEEAANLRDDQE-----KLENEAAEKEKAWREGESNVKMVVDEDMIASVVSSTTG 496
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E +L KR++GQDEAV+A++R+++R+RVGLKDP RP+ + +F G
Sbjct: 497 IPVVKLTQAESQKLLQMESELHKRIVGQDEAVSALARSIRRARVGLKDPKRPSGSFIFAG 556
Query: 667 PTGVGKTELAKSLAACYF 684
PTGVGKTELAK+LA F
Sbjct: 557 PTGVGKTELAKALANFLF 574
>gi|422875386|ref|ZP_16921871.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens F262]
gi|380303655|gb|EIA15954.1| negative regulator of genetic competence MecB/ClpC [Clostridium
perfringens F262]
Length = 814
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 251/613 (40%), Positives = 366/613 (59%), Gaps = 52/613 (8%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKD-MVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ F E + K VI +E+ + K + T+HLL+GLI E+ + LE ++ +
Sbjct: 3 LDNFNENS-KIVINKGKESSLMLKHGYMGTEHLLIGLINENGQCSKILEESNVTEEKVLS 61
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ G+ S ++PF+ K++ + +VE ++ G++ PEHI
Sbjct: 62 FIKLY-----------VGIGEVNYSLDEVPFTPRCKKILDRSVEIAKEYGHSISRPEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRL-GVDVNHLAAVAVSRLQGELAKEGREPSL-AKGVRENSISGK 258
L L +G A +L ++ D+ +++ +L L GR PS +K ++E
Sbjct: 111 LALIKEREGVANLILTKIVKNDIKNIS----DKLNNIL---GRIPSKESKSLKEK----- 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ P R L + ++L +A + +DPVIGR+ E QR+++ILCRR KNNP L+G
Sbjct: 159 ----EKPKRKDTPTLNLYGINLIEKADKNKLDPVIGRKDETQRLLEILCRRMKNNPCLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA RI+ EVP + KRI +LD+ ++AGAK RGE E R+ +++E+
Sbjct: 215 EPGVGKTAVVEGLAQRILLGEVPDIIKDKRIFTLDVTSMLAGAKYRGEFEERLKKVLNEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ S D+ILFIDE+H ++G+G G +G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 275 KDSDDIILFIDEMHNIVGAG----GAEG-AIDASNILKPALARGEIQCIGATTTDEYRKN 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EPS+ED+V IL GLREKYE HHN K T E I AAV+LS+RYI+
Sbjct: 330 IEKDSALERRFQPVVVKEPSKEDSVLILKGLREKYEVHHNVKLTDEPIEAAVNLSSRYIT 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA ++ IE + I+ PP + QE E + +
Sbjct: 390 DRFLPDKAIDLIDEAAAKVRIE---------SMIV--PPRLFKQEELIANLKIEKEEAIK 438
Query: 559 LKYDDVVASMGDTSEIVV-----ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
L+ ++ A + D ++ + L + ++ V + IA V S W+ IPV+++T
Sbjct: 439 LQDFELAAKLRDEELMLQEELERDKELWREENYNKIYEVNKEHIAKVVSKWTQIPVERLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE+L KRVIGQ EA+ IS+AV+RSRVGLKDP RP + F GPTGVGKT
Sbjct: 499 EKESSRLLKLEEKLSKRVIGQLEAIRTISKAVRRSRVGLKDPKRPIGSFAFLGPTGVGKT 558
Query: 674 ELAKSLAACYFGS 686
EL K+LA FG
Sbjct: 559 ELCKALAEAMFGD 571
>gi|417941914|ref|ZP_12585194.1| ATP-dependent chaperone protein ClpB [Bifidobacterium breve CECT
7263]
gi|376167760|gb|EHS86584.1| ATP-dependent chaperone protein ClpB [Bifidobacterium breve CECT
7263]
Length = 863
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 250/615 (40%), Positives = 368/615 (59%), Gaps = 52/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+ +D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N AA G +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGN------AAPNGH-------IPFTPHAKQVLEFSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + + ++G + KG N+ G
Sbjct: 108 ILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGNSGT----STDGKGDLANA--GG 161
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A ++ ++ ++ L+QF +LTA A+E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 162 VADKQN--KSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIG 219
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 220 EPGVGKTAVVEGLAQKIQAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 279
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 280 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 334
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ +A LS+RYI
Sbjct: 335 IEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQ 394
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQA-MHEVVQ 555
DR LPDKAIDL+DEAG+R I KR L+ PP+ + +I + A E ++
Sbjct: 395 DRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDDKIAKISADKDEAIK 443
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWSGIPV 609
G + A + D E +E+ + D D VV D IA V S +GIPV
Sbjct: 444 GQDFEK---AAELRDNQE-KLEAERKAKEDSWREGESDVKMVVDEDVIAEVISATTGIPV 499
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTG
Sbjct: 500 FKLTQAESKKLLNMEAELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTG 559
Query: 670 VGKTELAKSLAACYF 684
VGKTELAK+LA F
Sbjct: 560 VGKTELAKTLAEFLF 574
>gi|313894758|ref|ZP_07828318.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
oral taxon 137 str. F0430]
gi|312976439|gb|EFR41894.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
oral taxon 137 str. F0430]
Length = 835
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 265/621 (42%), Positives = 365/621 (58%), Gaps = 74/621 (11%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSI 144
FT+ A+KAV FSQ A+ GK + T LLLG++ H + A EA+ +
Sbjct: 7 FTQTAIKAVEFSQYIAQRRGKGYIGTGQLLLGIL----HMRDTI--------AAEALTA- 53
Query: 145 WHSTNNQDTDDAAAQGKPFSSA----AKMPF-SISTKRVFEAAVEYSRSRGYNFIAPEHI 199
H + + G F ++P+ + +RV + A++ +R +F+ EHI
Sbjct: 54 -HGVDYDRVEQVLRTGDVFQDVRVANEEVPYYTRRAQRVMQGAIDTAREE-RSFVTTEHI 111
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
L L T +G+A RVL+ L VD+ L + R+ E K R+ S G+
Sbjct: 112 LLSLLTEAEGTAVRVLEELDVDIEELQSQVFDRMNSV-----EETPKGKSARKKSGKGEK 166
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+AL ++L+++ DL A IDPVIGR+TEI R+IQIL RRTKNNP+LLGE
Sbjct: 167 SAL-------PASLKKYARDLVGIARSGGIDPVIGRDTEIDRLIQILARRTKNNPLLLGE 219
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
+GVGKTA+AEGLA RI EVP L +KRI+SL M L+AG K RGE E R+ ++ ++
Sbjct: 220 AGVGKTAVAEGLAQRIADGEVPFLLENKRIVSLSMTALVAGTKYRGEFEERLKNVVDDVI 279
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
KS ++ILFIDE+HTLI +G G +G+ LD +N+LKP+L R E+Q I +TTQ E++ F
Sbjct: 280 KSKNLILFIDEIHTLIRTG----GAEGS-LDAANILKPALARSEMQIIGATTQSEYKKHF 334
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
KD ALARRFQ V + EPS+EDA RIL GLR+KYE H+ + A+ AAV L+ RYI+D
Sbjct: 335 AKDSALARRFQVVTVGEPSEEDAERILFGLRDKYEEFHHAQIEDSAVCAAVRLAKRYITD 394
Query: 500 RYLPDKAIDLVDEAGSRA---HI-----------ELFKRKKEQQTCILSKPPDDYWQEIR 545
RYLPDKAIDL+DEA SR HI EL KE++ I ++ +Y + R
Sbjct: 395 RYLPDKAIDLMDEAASRVRMQHIGMSDALSGLRAELAGLVKEKERAISAQ---NYEEAAR 451
Query: 546 TVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWS 605
+ + Q R + D A GD ++ V DDIA+V + W+
Sbjct: 452 ----LRDREQELRTQLD--AARHGDEQRTLIH--------------VTEDDIASVVAQWT 491
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPVQ+I A E L+ LE+ + +RVIGQDEA+ A+S+AV+R+R G+KDP RP + LF
Sbjct: 492 GIPVQRIAAKESDRLLILEKTIGRRVIGQDEAIHAVSKAVRRARAGVKDPRRPIGSFLFL 551
Query: 666 GPTGVGKTELAKSLAACYFGS 686
G TGVGKTELA++LA FG+
Sbjct: 552 GSTGVGKTELARALAESVFGT 572
>gi|289548462|ref|YP_003473450.1| ATPase AAA [Thermocrinis albus DSM 14484]
gi|289182079|gb|ADC89323.1| ATPase AAA-2 domain protein [Thermocrinis albus DSM 14484]
Length = 814
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 250/614 (40%), Positives = 370/614 (60%), Gaps = 64/614 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+FE+FTE+A + ++ ++ EA LG + ++H+LL LI ++ P L G+T D+ R+
Sbjct: 1 MFEKFTEKARQVILQAREEALELGHTYLGSEHILLALIKDEDLPTLILSRFGLTPDRVRK 60
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
A++ Q S++ ++ F+ KRV E AVE +R + F+ PEH+
Sbjct: 61 AIM---------------GQVTRGSNSGEVLFAPDAKRVLEFAVEEARILHHQFVGPEHL 105
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
+G+ G GR+L+ G+D E S+ + V + I G+
Sbjct: 106 LIGVVREKTGLGGRILRGFGLD---------------------EYSVRREVLQ--ILGEL 142
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+S L++F DLT A E +DPVIGR+ EI+R+IQIL RR KNNP+LLG+
Sbjct: 143 PPQESVKYAPTPNLDRFSRDLTQMAREGKLDPVIGRDREIERVIQILVRRRKNNPVLLGD 202
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA RI + VP LL+KRI++LD+ L+AG K RG+ E R+ ++ E++
Sbjct: 203 PGVGKTAIVEGLAQRIAERRVPEPLLNKRIVALDLAALVAGTKYRGQFEERLKNILKELE 262
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
K+ +VILFIDE+HTL+G+G+ +G+ +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 263 KAPNVILFIDEIHTLVGAGSA----EGS-IDASNMLKPALARGEIQVIGATTLDEYRKYI 317
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPVL+ EP+ ED ++IL GL+ K+E HN ++T +AI AV LS RYI++
Sbjct: 318 EKDGALERRFQPVLVEEPTVEDTIQILYGLKPKFEEFHNVEYTPQAIEKAVILSERYITE 377
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAID++DEAGS + ++ PP+ E R Q E + +
Sbjct: 378 RHLPDKAIDVMDEAGSLVKLRAYQL-----------PPELQELEERIKQIEAEKDEAASE 426
Query: 560 KYDDVVASMGDTSEIVVESSLPSAS-------DDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + A + D E+ + + L + + P V +D+A V + W+GIPV+++
Sbjct: 427 QDYERAARLRD-EELRLRAKLENLKMKWKQEMAHNRPKVT-EEDVAEVVARWTGIPVKRV 484
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+ L+ +EE+LKKRV+GQDEA+ A++RA++RSRVGLK +RP LF GPTGVGK
Sbjct: 485 HESDMEKLLHIEEELKKRVVGQDEAIKAVARAIRRSRVGLKGRHRPIGVFLFLGPTGVGK 544
Query: 673 TELAKSLAACYFGS 686
TE AK+LA FG+
Sbjct: 545 TETAKALAEYLFGT 558
>gi|336120464|ref|YP_004575249.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Microlunatus
phosphovorus NM-1]
gi|334688261|dbj|BAK37846.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Microlunatus
phosphovorus NM-1]
Length = 849
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 250/615 (40%), Positives = 364/615 (59%), Gaps = 56/615 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I S + +PF+ K+V E ++ + +++I EH
Sbjct: 61 QKVEEIIGHGQQ-------------SPSGHIPFTPRAKKVLELSLREALQINHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + + L G KE
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRSQVLQLLSGFQGKEA----------------A 151
Query: 259 TAALKSPGRTRASA--LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
TA G +S+ L+QF +LT A E +DPVIGRETEI+R++ +L RRTKNNP+L
Sbjct: 152 TAGAPEQGNAPSSSMVLDQFGRNLTQAARENKLDPVIGRETEIERVMTVLSRRTKNNPVL 211
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+ EGL+ IV+ +VP L K+I +LD+G L+AG++ RG+ E R+ ++
Sbjct: 212 IGEPGVGKTAVVEGLSQAIVRGDVPETLRDKQIYTLDLGALVAGSRYRGDFEERLKKVLK 271
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ GDV+LFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 272 EIRTRGDVVLFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYR 326
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T EA+ AA ++ RY
Sbjct: 327 KYVEKDAALERRFQPIQVAEPSIAHTIDILRGLRDRYEAHHRITITDEALVAAAQMADRY 386
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVV 554
ISDR+LPDKAIDL+DEAG+R I ++ PPD ++ ++I V+ E
Sbjct: 387 ISDRFLPDKAIDLIDEAGARLRIRR-----------MTAPPDLREFDEKIAAVRLEKEAA 435
Query: 555 QGSRLKYDDVVASMGDTSEIVVESSLPSA----SDDDEPAVVGPDDIAAVASLWSGIPVQ 610
++ ++ + D +++ S A D D A V + IA V S +GIPV
Sbjct: 436 IDAQ-DFERAASLRDDEKKLLASRSEREAQWKSGDLDVVAEVDEEIIAEVLSTATGIPVF 494
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T +E L+ +E++L KR IGQ +AV A+SR+++R+R GLKDP RP+ + +F GP+GV
Sbjct: 495 KLTEEESARLLRMEDELGKRYIGQHDAVRALSRSIRRTRAGLKDPKRPSGSFIFAGPSGV 554
Query: 671 GKTELAKSLAACYFG 685
GKTEL K+L FG
Sbjct: 555 GKTELTKALTEFLFG 569
>gi|320106224|ref|YP_004181814.1| ATPase AAA-2 domain-containing protein [Terriglobus saanensis
SP1PR4]
gi|319924745|gb|ADV81820.1| ATPase AAA-2 domain protein [Terriglobus saanensis SP1PR4]
Length = 826
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 242/619 (39%), Positives = 369/619 (59%), Gaps = 42/619 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLESGITIDKARE 139
+FER+TE+A + + F++ EA G + T+HLLLGL+ ED+ N FL S +++ R+
Sbjct: 1 MFERYTEKARRVIFFARYEASQFGSPYIETEHLLLGLLREDKALTNRFLRSHASVESIRK 60
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ H+T + S++ +P S KRV A E + + I EH+
Sbjct: 61 QIEG--HTTIREKV----------STSVDLPLSNECKRVLAYAAEEAERLSHKHIGTEHL 108
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL + A +L+ G+ L A+ RE L + +E +
Sbjct: 109 LLGLLREEKCFAAEILQERGL---RLPAI-------------RE-ELQRTTQEKPAPNQK 151
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
A + S L +F DLT A+++ +DP++GR+ E++R+IQILCRRTKNNP+L+GE
Sbjct: 152 QARNAGSGGEQSMLAEFSRDLTQAAADQQLDPLVGRDPELERVIQILCRRTKNNPVLIGE 211
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA +I +VP FL KR++SLD+ L++AG K RG+ E R+ T++ E+
Sbjct: 212 PGVGKTAIVEGLAQKIADGDVPSFLADKRVLSLDLSLIVAGTKYRGQFEERLKTIMKELM 271
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++ + I+FIDE+HTL+G+G+ +G+ LD +N+LKP+L RGE+QC+ +TT E+R
Sbjct: 272 ENQNCIVFIDELHTLVGAGSA----EGS-LDAANILKPALSRGEIQCVGATTPAEYRKSI 326
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD++L RRFQ V + P++EDA++I++G++EKYE H +T EAI +V S RYI D
Sbjct: 327 EKDRSLERRFQAVKVPPPNEEDAIKIIMGIKEKYEKFHAVSYTDEAILFSVSHSNRYIPD 386
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R+LPDKAIDL+DEAG+R ++L + ++ + K + A HE + +R
Sbjct: 387 RFLPDKAIDLIDEAGAR--VKLRQSSLPEELTEVQKRIKFIVHRMENAIANHE-FEKARF 443
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERML 619
D+ + + + L DD +V +DI V S W+G+P+ I +E
Sbjct: 444 YSDEERKERENLRALRDKYHL----DDSSAGIVTKEDIEDVVSRWTGVPITAIKEEETAK 499
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ +EE+L KRVI Q++A++A++RA++RSR GLK+P RP + LF GPTGVGKTE+A++L
Sbjct: 500 LMRVEEELHKRVISQEKAISALARAIRRSRAGLKNPARPIGSFLFLGPTGVGKTEMARTL 559
Query: 680 AACYFGSVRIHYLFFPSPF 698
A FGS + F S F
Sbjct: 560 AQFLFGSEKSLIRFDMSEF 578
>gi|420153551|ref|ZP_14660509.1| Clp amino terminal domain protein [Actinomyces massiliensis F0489]
gi|394759147|gb|EJF41931.1| Clp amino terminal domain protein [Actinomyces massiliensis F0489]
Length = 851
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/611 (41%), Positives = 365/611 (59%), Gaps = 51/611 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA++L + + T+HLLLGLI E LES +++D R
Sbjct: 1 MFERFTDRARRVVVLAQDEARALNHNYIGTEHLLLGLIHEGEGVAAKALESMDVSLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
VV I Q P + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 AQVVDII----------GEGQSAP---SGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D++ + + L G EG+E A G + +
Sbjct: 108 ILLGLLREGEGVAAQVLTKLGADLSTVRQTVMQMLSG---YEGKETVTAGGSSKEGVPSG 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+A L +QF +LTA A E +DPVIGR E++R++QIL RRTKNNP+L+G
Sbjct: 165 SAIL-----------DQFGRNLTAAAREGKLDPVIGRHKEMERVMQILSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGL+ IV +VP L K++ SLDMG L+AG++ RG+ E R+ ++ E+
Sbjct: 214 EPGVGKTAVVEGLSQAIVHGDVPETLRDKQLYSLDMGSLVAGSRYRGDFEERLKKVLKEV 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT +E+R +
Sbjct: 274 RTRGDIILFIDEIHTLVGAGAA----EGA-VDAASILKPMLARGELQTIGATTLEEYR-K 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + +PS E+ V IL GLR++YEA H T +AI AA L+ RYI+
Sbjct: 328 IEKDAALERRFQPVTVDQPSIEETVGILTGLRDRYEAFHRVVITDDAIQAAAKLADRYIN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PP+ + R + E
Sbjct: 388 DRFLPDKAIDLIDEAGARLRIRR-----------MTAPPELREIDDRIAKVKREKESAID 436
Query: 559 LKYDDVVASMGDTSEIVVESSLPS-----ASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D + E + D D+ A V +A V ++ +GIPV ++T
Sbjct: 437 DQDFERAAALRDDERRLSEEREDKEKAWRSGDLDQVAEVDEGLVAEVLAMSTGIPVVKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+G+E +L KR+IGQD+A+ A+S++++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 497 EAESAKLLGMETELHKRIIGQDKAIEALSKSIRRTRAGLKDPKRPGGSFIFAGPTGVGKT 556
Query: 674 ELAKSLAACYF 684
ELAK+LA F
Sbjct: 557 ELAKALAEFLF 567
>gi|116621396|ref|YP_823552.1| ATPase [Candidatus Solibacter usitatus Ellin6076]
gi|116224558|gb|ABJ83267.1| ATPase AAA-2 domain protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 823
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 242/614 (39%), Positives = 361/614 (58%), Gaps = 64/614 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLESGITIDKARE 139
+FER+TE+A + + F++ EA G + T+HLLLGL+ ED+ N FL S ++ R+
Sbjct: 1 MFERYTEKARRVIFFARYEASQFGSPYIETEHLLLGLLREDKALANRFLRSHAAVESIRK 60
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ H+T + S++ +P S KRV E + + I EH+
Sbjct: 61 QIEG--HTTIREKV----------STSVDLPLSHECKRVLAYGAEEAERLSHKHIGTEHL 108
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL + A +L H + +S ++ ELA+ E + +E+S+
Sbjct: 109 LLGLLREEKCFAAEIL--------HERGLRLSTIREELARSQSEKVASARPKESSL---- 156
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
L +F DLT A + +DP+IGR+ E++R++QILCRRTKNNP+L+GE
Sbjct: 157 -------------LAEFSRDLTQAAMDNTLDPLIGRDYELERVVQILCRRTKNNPVLIGE 203
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA RI + +VP FL KRI++LD+ L++AG K RG+ E R+ T++ E+
Sbjct: 204 PGVGKTAIVEGLAQRIAEGDVPSFLADKRILALDLSLIVAGTKYRGQFEERLKTIMKELM 263
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
++ + I+FIDE+HTL+G+G+ +G+ LD +N+LKP+L RGE+QCI +TT E R
Sbjct: 264 ENQNAIIFIDELHTLVGAGSA----EGS-LDAANILKPALSRGEIQCIGATTPAEFRKSI 318
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD++L RRFQ V + P++ DA++IL G++++YE H +T +AI AAV+ S+RYI D
Sbjct: 319 EKDRSLERRFQAVKVPPPNESDAIKILFGIKDRYEKFHAVAYTDDAIEAAVYTSSRYIPD 378
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIR-TVQAMHEVVQG 556
RYLPDKAIDL+DEAG+R + +QT + P D D + I+ V M +
Sbjct: 379 RYLPDKAIDLIDEAGARVKL--------RQTTL---PADLADIQKRIKFIVHRMENAIAN 427
Query: 557 SRLK----YDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ Y D + ++ E DD V DDI V + W+G+P+ I
Sbjct: 428 HEFEKARFYSDEERKERENMRLLREK---YNLDDSSTGCVTKDDIEDVVARWTGVPMTSI 484
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ +EE+L KRVI Q++A++A++RA++RSR GLK NRP + LF GPTGVGK
Sbjct: 485 KEEEIAKLLRIEEELHKRVISQEKAISALARAIRRSRAGLKASNRPAGSFLFLGPTGVGK 544
Query: 673 TELAKSLAACYFGS 686
TE+A++LA FGS
Sbjct: 545 TEVARALAGFLFGS 558
>gi|31794773|ref|NP_857266.1| ATP-dependent Clp protease ATP-binding subunit CLPC [Mycobacterium
bovis AF2122/97]
gi|57117131|ref|YP_177995.1| Probable ATP-dependent protease ATP-binding subunit ClpC1
[Mycobacterium tuberculosis H37Rv]
gi|121639516|ref|YP_979740.1| ATP-dependent Clp protease ATP-binding subunit clpC [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|148663461|ref|YP_001284984.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mycobacterium
tuberculosis H37Ra]
gi|148824802|ref|YP_001289556.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis F11]
gi|167968197|ref|ZP_02550474.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis H37Ra]
gi|224992013|ref|YP_002646702.1| ATP-dependent Clp protease ATP-binding subunit [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253800637|ref|YP_003033638.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis KZN 1435]
gi|289445190|ref|ZP_06434934.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis CPHL_A]
gi|289747433|ref|ZP_06506811.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
tuberculosis 02_1987]
gi|294993716|ref|ZP_06799407.1| probable ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium tuberculosis 210]
gi|297636272|ref|ZP_06954052.1| probable ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium tuberculosis KZN 4207]
gi|297733266|ref|ZP_06962384.1| probable ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium tuberculosis KZN R506]
gi|306791193|ref|ZP_07429495.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis SUMu005]
gi|307086394|ref|ZP_07495507.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis SUMu012]
gi|313660596|ref|ZP_07817476.1| probable ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium tuberculosis KZN V2475]
gi|340628561|ref|YP_004747013.1| putative ATP-dependent protease ATP-binding subunit CLPC1
[Mycobacterium canettii CIPT 140010059]
gi|375297863|ref|YP_005102130.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis KZN 4207]
gi|378773377|ref|YP_005173110.1| putative ATP-dependent Clp protease, ATP-binding subunit
[Mycobacterium bovis BCG str. Mexico]
gi|383309326|ref|YP_005362137.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium tuberculosis RGTB327]
gi|385992823|ref|YP_005911121.1| ATP-dependent Clp protease ATP-binding subunit CLPC [Mycobacterium
tuberculosis CCDC5180]
gi|385996461|ref|YP_005914759.1| ATP-dependent Clp protease ATP-binding subunit CLPC [Mycobacterium
tuberculosis CCDC5079]
gi|386000382|ref|YP_005918681.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
tuberculosis CTRI-2]
gi|392388189|ref|YP_005309818.1| clpC1 [Mycobacterium tuberculosis UT205]
gi|392434075|ref|YP_006475119.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis KZN 605]
gi|397675551|ref|YP_006517086.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mycobacterium
tuberculosis H37Rv]
gi|422814849|ref|ZP_16863067.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
tuberculosis CDC1551A]
gi|424806159|ref|ZP_18231590.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
tuberculosis W-148]
gi|424945484|ref|ZP_18361180.1| ATP-dependent protease ATP-binding subunit [Mycobacterium
tuberculosis NCGM2209]
gi|433628738|ref|YP_007262367.1| Putative ATP-dependent Clp protease ATP-binding subunit ClpC1
[Mycobacterium canettii CIPT 140060008]
gi|433632691|ref|YP_007266319.1| Putative ATP-dependent Clp protease ATP-binding subunit ClpC1
[Mycobacterium canettii CIPT 140070010]
gi|433636704|ref|YP_007270331.1| Putative ATP-dependent Clp protease ATP-binding subunit ClpC1
[Mycobacterium canettii CIPT 140070017]
gi|433643788|ref|YP_007289547.1| Putative ATP-dependent Clp protease ATP-binding subunit ClpC1
[Mycobacterium canettii CIPT 140070008]
gi|449065710|ref|YP_007432793.1| ATP-dependent Clp protease ATP-binding subunit CLPC [Mycobacterium
bovis BCG str. Korea 1168P]
gi|61221148|sp|P0A522.1|CLPC_MYCTU RecName: Full=Probable ATP-dependent Clp protease ATP-binding
subunit
gi|61221149|sp|P0A523.1|CLPC_MYCBO RecName: Full=Probable ATP-dependent Clp protease ATP-binding
subunit
gi|31620370|emb|CAD95813.1| PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPC
[Mycobacterium bovis AF2122/97]
gi|121495164|emb|CAL73650.1| Probable ATP-dependent clp proteasE ATP-binding subunit clpC
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|148507613|gb|ABQ75422.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mycobacterium
tuberculosis H37Ra]
gi|148723329|gb|ABR07954.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis F11]
gi|224775128|dbj|BAH27934.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium bovis BCG str. Tokyo 172]
gi|253322140|gb|ACT26743.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis KZN 1435]
gi|289418148|gb|EFD15349.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis CPHL_A]
gi|289687961|gb|EFD55449.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
tuberculosis 02_1987]
gi|308340222|gb|EFP29073.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis SUMu005]
gi|308364160|gb|EFP53011.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis SUMu012]
gi|323717705|gb|EGB26905.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
tuberculosis CDC1551A]
gi|326905435|gb|EGE52368.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
tuberculosis W-148]
gi|328460368|gb|AEB05791.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis KZN 4207]
gi|339296415|gb|AEJ48526.1| ATP-dependent Clp protease ATP-binding subunit CLPC [Mycobacterium
tuberculosis CCDC5079]
gi|339300016|gb|AEJ52126.1| ATP-dependent Clp protease ATP-binding subunit CLPC [Mycobacterium
tuberculosis CCDC5180]
gi|340006751|emb|CCC45939.1| putative ATP-dependent protease ATP-binding subunit CLPC1
[Mycobacterium canettii CIPT 140010059]
gi|341603537|emb|CCC66218.1| probable ATP-dependent clp proteasE ATP-binding subunit clpC
[Mycobacterium bovis BCG str. Moreau RDJ]
gi|344221429|gb|AEN02060.1| ATP-dependent protease ATP-binding subunit ClpC1 [Mycobacterium
tuberculosis CTRI-2]
gi|356595698|gb|AET20927.1| Putative ATP-dependent Clp protease, ATP-binding subunit
[Mycobacterium bovis BCG str. Mexico]
gi|358229999|dbj|GAA43491.1| ATP-dependent protease ATP-binding subunit [Mycobacterium
tuberculosis NCGM2209]
gi|378546740|emb|CCE39019.1| clpC1 [Mycobacterium tuberculosis UT205]
gi|379029983|dbj|BAL67716.1| ATP-dependent protease ATP-binding subunit [Mycobacterium
tuberculosis str. Erdman = ATCC 35801]
gi|380723279|gb|AFE18388.1| putative ATP-dependent Clp protease ATP-binding subunit
[Mycobacterium tuberculosis RGTB327]
gi|392055484|gb|AFM51042.1| ATP-dependent protease ATP-binding subunit clpC1 [Mycobacterium
tuberculosis KZN 605]
gi|395140456|gb|AFN51615.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Mycobacterium
tuberculosis H37Rv]
gi|432156344|emb|CCK53602.1| Putative ATP-dependent Clp protease ATP-binding subunit ClpC1
[Mycobacterium canettii CIPT 140060008]
gi|432160336|emb|CCK57659.1| Putative ATP-dependent Clp protease ATP-binding subunit ClpC1
[Mycobacterium canettii CIPT 140070008]
gi|432164284|emb|CCK61736.1| Putative ATP-dependent Clp protease ATP-binding subunit ClpC1
[Mycobacterium canettii CIPT 140070010]
gi|432168297|emb|CCK65831.1| Putative ATP-dependent Clp protease ATP-binding subunit ClpC1
[Mycobacterium canettii CIPT 140070017]
gi|440583104|emb|CCG13507.1| putative ATP-DEPENDENT PROTEASE ATP-BINDING SUBUNIT CLPC1
[Mycobacterium tuberculosis 7199-99]
gi|444897153|emb|CCP46419.1| Probable ATP-dependent protease ATP-binding subunit ClpC1
[Mycobacterium tuberculosis H37Rv]
gi|449034218|gb|AGE69645.1| ATP-dependent Clp protease ATP-binding subunit CLPC [Mycobacterium
bovis BCG str. Korea 1168P]
Length = 848
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 254/613 (41%), Positives = 362/613 (59%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKTLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|375084709|ref|ZP_09731569.1| hypothetical protein HMPREF9454_00180 [Megamonas funiformis YIT
11815]
gi|374567956|gb|EHR39154.1| hypothetical protein HMPREF9454_00180 [Megamonas funiformis YIT
11815]
Length = 848
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 251/613 (40%), Positives = 364/613 (59%), Gaps = 41/613 (6%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID--KAREAV 141
RFT+ A+K + +Q EAK L V T+++LLGL+ E + S I ID R+ V
Sbjct: 4 RFTQSAIKVLKLAQYEAKHLKHAHVGTEYILLGLLHEGTNVAAKALSSIGIDLYTVRQRV 63
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ +D DD + ++ +S K + E AVE +++ G+++I EHI L
Sbjct: 64 HEL---VEKEDFDDLETE--------EIGYSPEAKTIMEYAVEQAQALGHDYIGTEHILL 112
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
G+ + A +L LG D++ + + L + + P L EN K
Sbjct: 113 GIIYDTESIACEILVSLGADLDIIHDAILDLLNEDTLNDM--PKL-NVFNENKAPKKDNN 169
Query: 262 LKSPGRTRASA---LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
K + SA L+++ DL A EE IDPVIGR EI+R+IQIL RRTKNNPIL+G
Sbjct: 170 AKDNKQKNNSATPLLDKYGRDLNILAQEEKIDPVIGRNHEIERVIQILSRRTKNNPILIG 229
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA R++ +P L SKRI+SL+M L+AG K RG+ E R+ +I EI
Sbjct: 230 EPGVGKTAVTEGLAQRLINGNIPKVLASKRIISLNMASLVAGTKYRGDFEDRLKKIIDEI 289
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
++ ++ILFIDE+HTL+G+G +G+ +D +N+LKP+L RGE+Q I +TT E++
Sbjct: 290 IENKNIILFIDEMHTLVGAGAA----EGS-IDAANILKPALSRGEIQVIGATTLKEYKKY 344
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQ ++++EPS EDA+ IL G+R KYE H K T EAI AAV +S RYI+
Sbjct: 345 IEKDSALERRFQTIMVNEPSAEDAISILKGIRNKYEKFHCAKITDEAIKAAVKISQRYIT 404
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA ++ ++ P + Q + +Q + + + +
Sbjct: 405 DRFLPDKAIDLMDEAAAKVRLKTV------------NIPTNISQLEQKIQDLKKAKEKAI 452
Query: 559 LKYDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
D +A+ EI ++ L +A ++ V +DIA VA+LW+GIPV+++
Sbjct: 453 DNQDYELAATIRDQEIQIKEELATAKTAWEKQNNAQIAVTEEDIADVATLWTGIPVKRLV 512
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
A E L+ +E+ L KRV+GQ+E V A+++A++R+R GLKDP RP + LF GPTGVGKT
Sbjct: 513 AKEADRLLHIEDILHKRVVGQNEGVNAVAKAIRRARAGLKDPKRPIGSFLFLGPTGVGKT 572
Query: 674 ELAKSLAACYFGS 686
ELA+SLA FG
Sbjct: 573 ELARSLAEAIFGD 585
>gi|164686582|ref|ZP_02210610.1| hypothetical protein CLOBAR_00174 [Clostridium bartlettii DSM
16795]
gi|164604311|gb|EDQ97776.1| ATPase family associated with various cellular activities (AAA)
[Clostridium bartlettii DSM 16795]
Length = 815
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 250/610 (40%), Positives = 363/610 (59%), Gaps = 47/610 (7%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
F RFT+ A A+ + AKSLG +V T+HL++GL+ E + GI A +
Sbjct: 3 FNRFTQGAKAAIDLGKNCAKSLGHRVVGTEHLVVGLLRE--------KDGI----AARVL 50
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
++ N + +GK +P S +K++ E A ++ N+I EHI L
Sbjct: 51 KNLGMDVNTFENKLIEIEGKSNPIEEDIPLSPRSKQILEKAFVFANKLKTNYIGTEHILL 110
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
+ +G ++L LGVD + ++ ++ G + EP+ E S K +
Sbjct: 111 AIAQEGEGLGIKILSSLGVDQRDIVE-SIMKMMG-VENYSMEPA------EKSDVNKEKS 162
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
KS L+++ V+LT A + IDPVI RE EIQR+IQIL RRTKNNP+L+G+ G
Sbjct: 163 SKS------KLLDKYGVNLTEEAKKGKIDPVICREKEIQRVIQILSRRTKNNPVLIGDPG 216
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKT++AEGLA I + VP L K + +LDMG L+AGAK RGE E R+ +I E++
Sbjct: 217 VGKTSVAEGLATNISRGRVPDTLKDKSLYTLDMGSLLAGAKYRGEFEERIKQVIDEVRDK 276
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
++ILFIDE+HT++G+G+ G G+ +D SN+LKP L RGE+Q I +TT DE+R EK
Sbjct: 277 ENIILFIDELHTIVGAGSTGDGS----IDASNILKPVLARGEMQIIGATTIDEYRKHIEK 332
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQPVL+ EP++E+A++IL LR++YEAHH K T AI AAV LS RYI+DR+
Sbjct: 333 DAALERRFQPVLVEEPTKENAIKILEILRDRYEAHHKVKITDGAIKAAVDLSVRYITDRF 392
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAM-HEVVQGSRLK 560
LPDKAIDL+DEAGSR R KE + PPD+ + ++++ +E + R +
Sbjct: 393 LPDKAIDLIDEAGSRV------RLKE------NTPPDEIKELEDKIESINNEKEEAVRCQ 440
Query: 561 YDDVVASMGDTS----EIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
+ A + D E + + S + E V + IA + S+W+GIPV +I +E
Sbjct: 441 NFEKAAKVRDEQRKLKEQLEQVRETWNSSNKEKDTVNEEVIADIVSMWTGIPVNKILEEE 500
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ +E L RV+GQ+EA+ +I+ A++R+R G+KDP++P + LF GPTGVGKTEL+
Sbjct: 501 AEKLLNMESILHNRVVGQEEAIKSIATAIRRARAGIKDPSKPIGSFLFLGPTGVGKTELS 560
Query: 677 KSLAACYFGS 686
K+LA FG
Sbjct: 561 KALAEAQFGD 570
>gi|325109333|ref|YP_004270401.1| ATPase AAA [Planctomyces brasiliensis DSM 5305]
gi|324969601|gb|ADY60379.1| ATPase AAA-2 domain protein [Planctomyces brasiliensis DSM 5305]
Length = 849
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 250/615 (40%), Positives = 366/615 (59%), Gaps = 50/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID--KAR 138
++ERFT+RA K + + +EA+ + + T+H+LLGL+ E + + +D K R
Sbjct: 1 MYERFTDRARKVMQLANQEAQRFNHEYIGTEHILLGLVKEGSGVAANVLKNLEVDLRKIR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I + G + K+P + K+V E A+E +R+ +N++ EH
Sbjct: 61 LEVEKIVQT------------GPDMVTMGKLPQTPRAKKVIEYAMEEARNLNHNYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL LG+ + + ++ L L EG E S E + SG
Sbjct: 109 LLLGLLREQEGVAAQVLMNLGMKLEDVREEVLNLLGHGL--EGAESS------ERAGSG- 159
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T K+ ++ AL+ F DLT A + +DPVIGRE EI+R+IQILCRR KNNP+LLG
Sbjct: 160 TGTAKAGKSSKTPALDSFGRDLTELARQGKLDPVIGREREIERVIQILCRRQKNNPVLLG 219
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E+GVGKTAI EG A V VP L KRI+ LD+ +++AG K RG+ E R+ +++E+
Sbjct: 220 EAGVGKTAIVEGFAQMCVDGNVPDLLTEKRIVVLDLAMMVAGTKYRGQFEERIKAVMNEV 279
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ + ILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R
Sbjct: 280 RRAKNTILFIDELHTLVGAG----GAEG-AIDASNVLKPALSRGELQCIGATTLDEYRKY 334
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQ V++ PS++ ++IL GLR++YE HH + T +AI AV LS+RYI+
Sbjct: 335 IEKDGALERRFQMVMVDPPSEDQTIQILKGLRDRYETHHKVQITDDAIAKAVELSSRYIT 394
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEI-RTVQAMHEVVQ 555
R LPDKAID++DEAG+ ++ R PPD + +EI R Q E V
Sbjct: 395 GRCLPDKAIDVIDEAGAYVRLKTMVR-----------PPDLKELEEEIERLNQQKEEAVA 443
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA-----VVGPDDIAAVASLWSGIPVQ 610
+ AS+ D ++ V + + E + +V + A V + +G+P+
Sbjct: 444 NQDF---EKAASLRDQADKVKKKKETITQEWKEKSKQKDGLVDAEIAATVVAKMTGVPLT 500
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
+I++++ + L+ +EE+L +RVI QDEA+ +S+AV+RSR GLKDP RPT LF GPTGV
Sbjct: 501 RISSEDAVRLLEMEEELHRRVISQDEAIKQVSKAVRRSRSGLKDPKRPTGVFLFAGPTGV 560
Query: 671 GKTELAKSLAACYFG 685
GKT LAK+LA FG
Sbjct: 561 GKTLLAKTLAEFMFG 575
>gi|332671844|ref|YP_004454852.1| ATPase AAA-2 domain-containing protein [Cellulomonas fimi ATCC 484]
gi|332340882|gb|AEE47465.1| ATPase AAA-2 domain protein [Cellulomonas fimi ATCC 484]
Length = 860
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 369/613 (60%), Gaps = 51/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 AQVQEIIGEGQQ-------------APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + + G +G+EP A G +E SG
Sbjct: 108 ILLGLIREGEGVAAQVLNKLGADLNRVRQQVIQLVSG---YQGKEPVAAGGPQEGQPSG- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ L+QF +LT A + +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 164 -----------SAVLDQFGRNLTQAARDGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQDIVRGDVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EP+ + A+ IL GLR++YEAHH T A+ AA L+ RY++
Sbjct: 328 VEKDPALERRFQPIQVAEPNLQHAIEILKGLRDRYEAHHRVSITDAALVAAATLADRYVN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDDYWQEIRTVQAMHEV 553
DRYLPDKAIDLVDEAG+R I R+ ++Q + + E +
Sbjct: 388 DRYLPDKAIDLVDEAGARLRIRRMTAPPELRELDEQIAETRRDKESAIDE-------QDF 440
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ +RL+ D +G + + + D D A V + IA V + +GIPV ++T
Sbjct: 441 EKAARLR--DAEKQLGLKRQ--EKEKAWKSGDLDAVAEVDEELIAEVLANATGIPVFKLT 496
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KRV+GQD A+ A+S+A++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 497 EEESSRLLRMEDELHKRVVGQDAAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPTGVGKT 556
Query: 674 ELAKSLAACYFGS 686
ELAK+LA FG
Sbjct: 557 ELAKALAEFLFGD 569
>gi|73663540|ref|YP_302321.1| stress response-related Clp ATPase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|122063325|sp|Q49V34.1|CLPC_STAS1 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|72496055|dbj|BAE19376.1| putative stress response-related Clp ATPase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 820
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 247/612 (40%), Positives = 352/612 (57%), Gaps = 56/612 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F R TERA + + +Q EA L + T+HLLLGL+ E P G A +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGI---------AAKV 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + + + G + ++ K+V E +++ +R +NF+ EHI
Sbjct: 50 LETFEITEEKVVEEVEKLIGHGQEQMGALHYTPRAKKVIELSMDEARKLHHNFVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL ++G A RV L D+N +++ + ++ K P ++ + + S T
Sbjct: 110 LGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMSNKNAQANKSNNTP 161
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP+L+GE
Sbjct: 162 TLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++ EI +
Sbjct: 211 GVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIHQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R E
Sbjct: 271 AGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKNIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EP+ ED + IL GLR++YEAHH + EA+ +A LS RY+SDR
Sbjct: 326 KDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALVSAAKLSHRYVSDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQAMHEV 553
+LPDKAIDL+DEA S+ ++ ++ EQQ + D + QE + +
Sbjct: 386 FLPDKAIDLIDEASSKVRLKSHTTPPNLKEIEQQIEQVKNEKDAAVHAQEFENAANLRDK 445
Query: 554 VQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+Y++ + +T + + + +DI V + W+GIP+ +I
Sbjct: 446 QTKLEKQYEEANTNWKNTQ-------------NGDNTSLSEEDIGEVIAGWTGIPLTKIN 492
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LE+ L RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPTGVGKT
Sbjct: 493 ETESDRLLNLEDTLHNRVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKT 552
Query: 674 ELAKSLAACYFG 685
ELA++LA FG
Sbjct: 553 ELARALAESMFG 564
>gi|399525068|ref|ZP_10765545.1| Clp amino terminal domain protein [Atopobium sp. ICM58]
gi|398373543|gb|EJN51465.1| Clp amino terminal domain protein [Atopobium sp. ICM58]
Length = 822
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 266/620 (42%), Positives = 367/620 (59%), Gaps = 58/620 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI+E GI + R
Sbjct: 1 MFERFTDRARRVVVLAQDEARGLKHNYIGTEHLLLGLISEGEGVAAKALETMGIKGEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+V+ I KP +PF+ KRVFE ++ + G+N+I EH
Sbjct: 61 ASVIEIIGEGE-----------KPVE--GHIPFTPRAKRVFELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG--ELAKEGREPSLAKGVRENSIS 256
+ LGL +G A +VL + G D+ + + L G +EGRE A
Sbjct: 108 LLLGLLKEGEGVAAQVLTKQGADLAQVRQTVIQMLSGYQRGDEEGRESVGAG-------- 159
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
P R+ ++ LEQF +LT A E +DPVIGR E++R++Q+L RRTKNNP+L
Sbjct: 160 --VGGSGGPERSNSAILEQFGRNLTQAARENKLDPVIGRRVEMERVMQVLSRRTKNNPVL 217
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+ EGLA IV +VP + K+I SLDMG L+AG++ RG+ E R+ ++
Sbjct: 218 IGEPGVGKTAVVEGLAQAIVHGDVPETIKDKQIYSLDMGSLVAGSRYRGDFEERLKKVLK 277
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ GD+ILFIDE+HTL+G+G +G+ +D + +LKP L RGELQ I +TT DE+R
Sbjct: 278 EIRTRGDIILFIDEIHTLVGAGAA----EGS-IDAAQMLKPMLARGELQTIGATTNDEYR 332
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQPV + EPS E+ V IL GLR++YEAHH T AI AA L+ RY
Sbjct: 333 KHIEKDAALERRFQPVKVEEPSVEETVEILKGLRDRYEAHHRVIITDAAIQAAAELADRY 392
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQ 555
ISDR+LPDKAIDLVDEAG+R I ++ PP E+R + + + EV +
Sbjct: 393 ISDRFLPDKAIDLVDEAGARLRIRR-----------MTAPP-----ELRELDEKIAEVRR 436
Query: 556 GSRLKYDD----VVASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
DD AS+ D + E + + DE A VG +IA V ++ +G
Sbjct: 437 NKEAAIDDQDFEKAASLRDEESKLSDERKAKEEAWKGGESDEIAEVGDQEIAEVLAMSTG 496
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E++L KRVIGQDEAV A++++++R+R GLKDPNRP + +F G
Sbjct: 497 IPVVRLTQTETAKLLKMEDELHKRVIGQDEAVKALAQSIRRTRSGLKDPNRPGGSFIFAG 556
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAK+LA FG
Sbjct: 557 PTGVGKTELAKALAEFLFGD 576
>gi|422347504|ref|ZP_16428416.1| hypothetical protein HMPREF9476_02489 [Clostridium perfringens
WAL-14572]
gi|373223958|gb|EHP46299.1| hypothetical protein HMPREF9476_02489 [Clostridium perfringens
WAL-14572]
Length = 814
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 251/613 (40%), Positives = 366/613 (59%), Gaps = 52/613 (8%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKD-MVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ F E + K VI +E+ + K + T+HLL+GLI E+ + LE ++ +
Sbjct: 3 LDNFNENS-KIVINKGKESSLMLKHGYMGTEHLLIGLINENGQCSKILEESNVTEEKVLS 61
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ ++ G+ S ++PF+ K++ + +VE ++ G++ PEHI
Sbjct: 62 FIKLY-----------VGIGEVNYSLDEVPFTPRCKKILDRSVEIAKEYGHSISRPEHIL 110
Query: 201 LGLFTVDDGSAGRVLKRL-GVDVNHLAAVAVSRLQGELAKEGREPSL-AKGVRENSISGK 258
L L +G A +L ++ D+ +++ +L L GR PS +K ++E
Sbjct: 111 LALIKEREGVANLILTKIVKNDIKNIS----DKLNNIL---GRIPSKESKSLKEK----- 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ P R L + ++L +A + +DPVIGR+ E QR+++ILCRR KNNP L+G
Sbjct: 159 ----EKPKRKDTPTLNLYGINLIEKADKNKLDPVIGRKDETQRLLEILCRRMKNNPCLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA RI+ EVP + KRI +LD+ ++AGAK RGE E R+ +++E+
Sbjct: 215 EPGVGKTAVVEGLAQRILLGEVPDIIKDKRIFTLDVTSMLAGAKYRGEFEERLKKVLNEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ S D+ILFIDE+H ++G+G G +G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 275 KDSDDIILFIDEMHNIVGAG----GAEG-AIDASNILKPALARGEIQCIGATTTDEYRKN 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV++ EPS+ED+V IL GLREKYE HHN K T EAI AAV+LS+RYI+
Sbjct: 330 IEKDSALERRFQPVVVKEPSKEDSVLILKGLREKYEVHHNVKLTDEAIEAAVNLSSRYIT 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
R+LPDKAIDL+DEA ++ IE + I+ PP + QE E + +
Sbjct: 390 YRFLPDKAIDLIDEAAAKVRIE---------SMIV--PPRLFKQEELIANLKIEKEEAIK 438
Query: 559 LKYDDVVASMGDTSEIVV-----ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
L+ ++ A + D ++ + L + ++ V + IA V S W+ IPV+++T
Sbjct: 439 LQDFELAAKLRDEELMLQEELERDKELWREENYNKIYEVNKEHIAKVVSKWTQIPVERLT 498
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ LEE+L KRVIGQ EA+ IS+AV+RSRVGLKDP RP + F GPTGVGKT
Sbjct: 499 EKESSRLLKLEEKLSKRVIGQLEAIRTISKAVRRSRVGLKDPKRPIGSFAFLGPTGVGKT 558
Query: 674 ELAKSLAACYFGS 686
EL K+LA FG
Sbjct: 559 ELCKALAEAMFGD 571
>gi|291457456|ref|ZP_06596846.1| negative regulator of genetic competence ClpC/MecB [Bifidobacterium
breve DSM 20213 = JCM 1192]
gi|57339190|gb|AAW49584.1| ClpC [Bifidobacterium breve UCC2003]
gi|291381291|gb|EFE88809.1| negative regulator of genetic competence ClpC/MecB [Bifidobacterium
breve DSM 20213 = JCM 1192]
gi|339479561|gb|ABE96029.1| Negative regulator of genetic competence clpC/mecB [Bifidobacterium
breve UCC2003]
Length = 869
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 250/615 (40%), Positives = 368/615 (59%), Gaps = 52/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+ +D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N AA G +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGN------AAPNGH-------IPFTPHAKQVLEFSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + + ++G + KG N+ G
Sbjct: 108 ILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGNSGT----STDGKGDLANA--GG 161
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A ++ ++ ++ L+QF +LTA A+E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 162 VADKQN--KSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIG 219
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 220 EPGVGKTAVVEGLAQKIQAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 279
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 280 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 334
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ +A LS+RYI
Sbjct: 335 IEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQ 394
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQA-MHEVVQ 555
DR LPDKAIDL+DEAG+R I KR L+ PP+ + +I + A E ++
Sbjct: 395 DRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDDKIAKIAADKDEAIK 443
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWSGIPV 609
G + A + D E +E+ + D D VV D IA V S +GIPV
Sbjct: 444 GQDFEK---AAELRDNQE-KLEAERKAKEDSWREGESDVKMVVDEDVIAEVISATTGIPV 499
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTG
Sbjct: 500 FKLTQAESKKLLNMEAELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTG 559
Query: 670 VGKTELAKSLAACYF 684
VGKTELAK+LA F
Sbjct: 560 VGKTELAKTLAEFLF 574
>gi|384196661|ref|YP_005582405.1| negative regulator of genetic competence ClpC/MecB [Bifidobacterium
breve ACS-071-V-Sch8b]
gi|333109379|gb|AEF26395.1| negative regulator of genetic competence ClpC/MecB [Bifidobacterium
breve ACS-071-V-Sch8b]
Length = 863
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 250/615 (40%), Positives = 368/615 (59%), Gaps = 52/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+ +D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N AA G +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGN------AAPNGH-------IPFTPHAKQVLEFSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + + ++G + KG N+ G
Sbjct: 108 ILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGNSGT----STDGKGDLANA--GG 161
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A ++ ++ ++ L+QF +LTA A+E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 162 VADKQN--KSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIG 219
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 220 EPGVGKTAVVEGLAQKIQAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 279
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 280 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 334
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ +A LS+RYI
Sbjct: 335 IEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQ 394
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQA-MHEVVQ 555
DR LPDKAIDL+DEAG+R I KR L+ PP+ + +I + A E ++
Sbjct: 395 DRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDDKIAKIAADKDEAIK 443
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWSGIPV 609
G + A + D E +E+ + D D VV D IA V S +GIPV
Sbjct: 444 GQDFEK---AAELRDNQE-KLEAERKAKEDSWREGESDVKMVVDEDVIAEVISSTTGIPV 499
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTG
Sbjct: 500 FKLTQAESKKLLNMEAELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTG 559
Query: 670 VGKTELAKSLAACYF 684
VGKTELAK+LA F
Sbjct: 560 VGKTELAKTLAEFLF 574
>gi|119714730|ref|YP_921695.1| ATPase [Nocardioides sp. JS614]
gi|119535391|gb|ABL80008.1| ATPase AAA-2 domain protein [Nocardioides sp. JS614]
Length = 861
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 247/609 (40%), Positives = 367/609 (60%), Gaps = 41/609 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E G+ KA E+
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLSHNYIGTEHILLGLIHEG--------EGVAA-KALES 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + Q ++ QG+ + + +PF+ K+V E ++ + G+++I EHI
Sbjct: 52 LDISLEAVRAQ-VEEIIGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHSYIGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A +VL++LG D+N + + L G KE ++ + +
Sbjct: 110 LGLIREGEGVAAQVLQKLGADLNRVRQQVIQLLSGFQGKE---------SAGSAAATGAS 160
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+P + + L+QF +LT A E +DPVIGRE EI+R++QIL RRTKNNP+L+GE
Sbjct: 161 GGDAP--SSSLVLDQFGRNLTQDAREGKLDPVIGREQEIERVMQILSRRTKNNPVLIGEP 218
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKT I EGLA IV+ VP L K+I +LD+G L+AG++ RG+ E R+ ++ EI+
Sbjct: 219 GVGKTTIVEGLAQDIVKGNVPETLKDKQIYTLDLGALVAGSRYRGDFEERLKKVLKEIRT 278
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
GD++LFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R E
Sbjct: 279 RGDIVLFIDEIHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKYLE 333
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ ++EPS + +L GLR++YEAHH T EA+ +A L+ RYISDR
Sbjct: 334 KDAALERRFQPIQVAEPSIAHTIEMLKGLRDRYEAHHRVTITDEALVSAATLADRYISDR 393
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAGSR I + + DD E+R Q + G
Sbjct: 394 FLPDKAIDLIDEAGSRLRIRRMTAPADLREY------DDKIGEVR--QRKEAAIDGQ--D 443
Query: 561 YDDVVASMGDTSEIVVESSLPS----ASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
++ + +++++ S A D DE A V + IA V ++ +GIP+ +++ +E
Sbjct: 444 FEAAARLRDEEKQLILKKSEREKQWRAGDMDEVAEVDEELIAEVLAVATGIPIVKLSEEE 503
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ +E++L KRVIGQ+EAV A+SRA++R+R GLKDP RP + +F GP+GVGKT L+
Sbjct: 504 STRLLKMEDELHKRVIGQEEAVKALSRAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTWLS 563
Query: 677 KSLAACYFG 685
K+LA FG
Sbjct: 564 KTLAEFLFG 572
>gi|420146514|ref|ZP_14653925.1| Chaperone protein ClpB [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398401747|gb|EJN55199.1| Chaperone protein ClpB [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 829
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/607 (41%), Positives = 355/607 (58%), Gaps = 40/607 (6%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAREAVV 142
FT A ++ +Q +AK V T+HLLL L+ E G + IT D RE +
Sbjct: 5 FTPSAKNVLVLAQEQAKYFRHHAVGTEHLLLALVIETDGIAGKTLRQLSITDDDIREEIE 64
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
+ +T S +P++ K++ A + ++ G I EHI LG
Sbjct: 65 RFTGYGTSAET----------QSDTYLPYAPKAKQILSYAGDEAKRMGAMKIGTEHILLG 114
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
L DD A R+L LG+ ++ + + +L G + AK R N+ G+ A
Sbjct: 115 LLREDDILAARILTNLGLSLSKTRQMILKKL-------GVTDTTAK--RRNAPRGRQAQG 165
Query: 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322
S T L+ DLT A E +DPV+GR E++R+IQ+L RRTKNNP+L+GE GV
Sbjct: 166 NSSEGT--PTLDSLARDLTQLARENQMDPVVGRSKEVRRLIQVLSRRTKNNPVLIGEPGV 223
Query: 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG 382
GKTAIAEGLA +I+ +VP + KR+M LDMG L+AG K RGE E R+ +I EI K G
Sbjct: 224 GKTAIAEGLAQKIIAGDVPDDMAKKRLMMLDMGSLVAGTKYRGEFEDRLKKVIDEIYKDG 283
Query: 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD 442
VILFIDE+HTLIG+G G +G +D SN+LKP+L RGE+Q I +TT DE++ EKD
Sbjct: 284 HVILFIDELHTLIGAG----GAEG-AIDASNILKPALARGEMQVIGATTLDEYQKYIEKD 338
Query: 443 KALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502
AL RRF + ++EP+Q +A ILLGLR +YE HH T EA++ AV LS+RYISDR+L
Sbjct: 339 AALERRFATIQVNEPTQAEAEEILLGLRSRYEEHHGVTITDEAVHEAVVLSSRYISDRFL 398
Query: 503 PDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV---QGSRL 559
PDKAIDL+DE+ + ++ +K + SK + Q ++ +A E + + +
Sbjct: 399 PDKAIDLIDESAASVRLDAASKKTPE-----SKLETELNQLVKDKEAAIEAQDFEKAASI 453
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERML 619
+ +++V ++ E + + + V PDDIA V S W+G+P+ Q+ E
Sbjct: 454 RENEMVLK----DKLATEQAAAPTNGVRKDVKVTPDDIATVVSQWTGVPLTQLQKSETER 509
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ LE+ L KRVIGQ+ AV+A+SRA++R+R GLKDP RP + +F GPTGVGKTELAK+L
Sbjct: 510 LINLEKVLHKRVIGQEAAVSAVSRAIRRARSGLKDPQRPIGSFMFLGPTGVGKTELAKAL 569
Query: 680 AACYFGS 686
A FGS
Sbjct: 570 AEAMFGS 576
>gi|365825915|ref|ZP_09367863.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces
graevenitzii C83]
gi|365257396|gb|EHM87440.1| ATP-dependent Clp protease ATP-binding subunit [Actinomyces
graevenitzii C83]
Length = 848
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/611 (41%), Positives = 362/611 (59%), Gaps = 50/611 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA++L + + T+HLLLGLI E LES +T+DKAR
Sbjct: 1 MFERFTDRARRVVVLAQDEARALNHNYIGTEHLLLGLIHEGEGVAAKALESMDVTLDKAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
VV I Q P + +PF+ K+V E ++ + +N+I EH
Sbjct: 61 AQVVEII----------GEGQSAP---SGHIPFTPRAKKVLELSLREALQLSHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A + L L VD+ L + L G AKE ++
Sbjct: 108 ILLGLLREGEGVAVQALGNLDVDLAALRQAVMQLLSGYDAKE-------------TVGSG 154
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ALK + ++ L+QF +LT A E +DPVIGR E++R++QIL RRTKNNP+L+G
Sbjct: 155 ASALKEGTPSGSAILDQFGRNLTQAAREGKLDPVIGRSKEMERVMQILSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGL+ IV +VP L K++ SLDMG L+AG++ RG+ E R+ ++ E+
Sbjct: 215 EPGVGKTAVVEGLSQAIVHGDVPETLRDKQLYSLDMGSLVAGSRYRGDFEERLKKVLKEV 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+ +G +D +++LKP L RGELQ I +TT +E+R +
Sbjct: 275 RTRGDIILFIDEIHTLVSAGAA-----EGAVDAASILKPMLARGELQTIGATTLEEYR-K 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + +P+ E A++IL GLR++YE+ H T EAI AAV S RYI+
Sbjct: 329 IEKDAALERRFQPVQVDQPTIEQAIQILKGLRDRYESFHRVIITDEAIEAAVKFSDRYIN 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DRYLPDKAIDLVDEAG+R I ++ PP+ + R + E
Sbjct: 389 DRYLPDKAIDLVDEAGARLRIRR-----------MTAPPELREIDERIAEVKREKESAID 437
Query: 559 LKYDDVVASMGDT-----SEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D SE + D D+ A V + IA V ++ +GIPV ++T
Sbjct: 438 AQDFERAAALRDDERRLGSERTAKEQAWKNGDLDQVAEVDENLIAEVLAMSTGIPVVKLT 497
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E +L KR++GQ++A+ A+S++++R+R GLKDP RP + +F GPTGVGKT
Sbjct: 498 EAESTKLLNMEAELHKRIVGQNKAIEALSKSIRRTRAGLKDPKRPGGSFIFAGPTGVGKT 557
Query: 674 ELAKSLAACYF 684
ELAK+LA F
Sbjct: 558 ELAKALAEFLF 568
>gi|227497047|ref|ZP_03927298.1| ATP-dependent protease, ATPase subunit [Actinomyces urogenitalis
DSM 15434]
gi|226833465|gb|EEH65848.1| ATP-dependent protease, ATPase subunit [Actinomyces urogenitalis
DSM 15434]
Length = 860
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 255/616 (41%), Positives = 367/616 (59%), Gaps = 61/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA++L + + T+HLLLGLI E LES I++D R
Sbjct: 1 MFERFTDRARRVVVLAQDEARALNHNYIGTEHLLLGLIHEGEGVAAKALESMDISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
VV I Q P + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 GQVVEII----------GEGQAAP---SGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D++ + + L G EG+E A G +
Sbjct: 108 ILLGLLREGEGVAAQVLTKLGADLSTVRQTVMQMLSG---YEGKEAVTAGGPSDKGTPSG 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+A L +QF +LTA A E +DPVIGR E++R++QIL RRTKNNP+L+G
Sbjct: 165 SAIL-----------DQFGRNLTAAAREGKLDPVIGRHKEMERVMQILSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGL+ IV +VP L K++ SLDMG L+AG++ RG+ E R+ ++ E+
Sbjct: 214 EPGVGKTAVVEGLSQAIVHGDVPETLRDKQLYSLDMGSLVAGSRYRGDFEERLKKVLKEV 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT +E+R +
Sbjct: 274 RTRGDIILFIDEIHTLVGAGAA----EGA-VDAASILKPMLARGELQTIGATTLEEYR-K 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + +PS E+ + IL GLR++YEA H T +AI AA L+ RYI+
Sbjct: 328 IEKDAALERRFQPVTVDQPSIEETIGILNGLRDRYEAFHRVVITDDAIEAAAKLADRYIN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGS 557
DR+LPDKAIDL+DEAG+R I ++ PP E+R + + EV +
Sbjct: 388 DRFLPDKAIDLIDEAGARLRIRR-----------MTAPP-----ELRAIDDKIAEVKREK 431
Query: 558 RLKYDD-----VVASMGDTSEIVVESSLPSAS----DDDEPAVVGPDDIAAVASLWSGIP 608
DD A D + E A+ + ++ A V + +A V ++ +GIP
Sbjct: 432 EAAIDDQDFERAAALRDDERRLAEERETKEAAWKSGEVEQVAEVNEELVAEVLAMSTGIP 491
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+G+E +L KR+IGQD+A+ A+S++++R+R GLKDP RP + +F GPT
Sbjct: 492 VVKLTEAESAKLLGMEAELHKRIIGQDKAIEALSKSIRRTRAGLKDPKRPGGSFIFAGPT 551
Query: 669 GVGKTELAKSLAACYF 684
GVGKTELAK+LA F
Sbjct: 552 GVGKTELAKALAEFLF 567
>gi|298527075|ref|ZP_07014484.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|298496869|gb|EFI32163.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
Length = 848
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 253/613 (41%), Positives = 360/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKTLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|291533975|emb|CBL07088.1| ATPases with chaperone activity, ATP-binding subunit [Megamonas
hypermegale ART12/1]
Length = 848
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 363/613 (59%), Gaps = 41/613 (6%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID--KAREAV 141
RFT+ A+K + +Q EAK L V T+H+LLGL+ E + S I ID R+ V
Sbjct: 4 RFTQSAIKVLKLAQYEAKHLKHAHVGTEHILLGLLHEGTNVAAKALSSIGIDLYTVRQRV 63
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+ +D DD + +S AK + E AVE +++ G+++I EHI L
Sbjct: 64 HEL---VEKEDFDDLETEEIGYSPKAKT--------IMEYAVEQAQALGHDYIGTEHILL 112
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
G+ + A +L L D++ + + L + + P L EN K
Sbjct: 113 GIIYDTESIACEILISLDADLDIIHDAILDLLNEDTLNDM--PKL-NVFNENKAPKKDNN 169
Query: 262 LKSPGRTRASA---LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
K + SA L+++ DL A EE IDPVIGR EI+R+IQIL RRTKNNPIL+G
Sbjct: 170 TKDNKQKNNSATPLLDKYGRDLNILAQEEKIDPVIGRNREIERVIQILSRRTKNNPILIG 229
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA R++ +P L SKRI+SL+M L+AG K RG+ E R+ +I EI
Sbjct: 230 EPGVGKTAVTEGLAQRLINGNIPKVLASKRIISLNMASLVAGTKYRGDFEDRLKKIIDEI 289
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
++ ++ILFIDE+HTLIG+G +G+ +D +N+LKP+L RGE+Q I +TT E++
Sbjct: 290 IENKNIILFIDEMHTLIGAGAA----EGS-MDAANILKPALSRGEIQVIGATTLKEYKKY 344
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQ ++++EPS EDA+ IL G+R KYE H K T EAI AAV +S RYI+
Sbjct: 345 IEKDSALERRFQTIMVNEPSVEDAISILKGIRNKYEEFHCAKITDEAIKAAVKISQRYIT 404
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA ++ ++ P + Q + +Q + + + +
Sbjct: 405 DRFLPDKAIDLMDEASAKVRLKTV------------NIPTNISQLEQKIQDLKKAKEKAI 452
Query: 559 LKYDDVVASMGDTSEIVVESSLPSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
D +A+ EI ++ L +A + ++ V +DIA VA+LW+GIPV+++
Sbjct: 453 DNQDYELAATIRDQEIQIKEELATAKTAWETQNNAQIAVTEEDIADVATLWTGIPVKRLV 512
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
A E L+ +E+ + KRV+GQ+E V A+++A++R+R GLKDP RP + LF GPTGVGKT
Sbjct: 513 AKEADRLLHIEDIIHKRVVGQNEGVNAVAKAIRRARAGLKDPKRPIGSFLFLGPTGVGKT 572
Query: 674 ELAKSLAACYFGS 686
ELA+SLA FG
Sbjct: 573 ELARSLAEAIFGD 585
>gi|227494485|ref|ZP_03924801.1| ATPase with chaperone activity, ATP-binding subunit [Actinomyces
coleocanis DSM 15436]
gi|226832219|gb|EEH64602.1| ATPase with chaperone activity, ATP-binding subunit [Actinomyces
coleocanis DSM 15436]
Length = 880
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 253/613 (41%), Positives = 358/613 (58%), Gaps = 51/613 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + V+ +Q EA+SL + + T+HLLLGLI E + + ++ R
Sbjct: 1 MFERFTDRARRVVVLAQNEARSLNHNYIGTEHLLLGLIQEGEGVAAKALEMANVDGEQVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E+++ + N T +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 ESIIEMIGEGKNAPT-------------GHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+ L + LQG GRE G
Sbjct: 108 ILLGLIREGEGVASKVLVKLGADLAELRQSVIQLLQGYQRTGGREAV-----------GV 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A+ P ++ LEQF LT A E +DPV+GR E++R++QIL RR+KNNP+L+G
Sbjct: 157 GASTPDPQPANSALLEQFGRSLTQAAREGQLDPVVGRHPEMERVMQILSRRSKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA I++ EVP L K+I SLDMG L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIIRNEVPETLRDKQIYSLDMGSLIAGSRYRGDFEERLKKILKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+I+FIDE+HTL+G+G +G +D + +LKP L RGELQ I +TT +E+R
Sbjct: 277 KTRGDIIIFIDEIHTLVGAGAA----EGA-IDAAQMLKPMLARGELQTIGATTLEEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS ++ + IL GLR++YEAHH T AI AA ++ RYI
Sbjct: 332 IEKDAALERRFQPVKVEEPSVDETIEILKGLRDRYEAHHRIIITDAAIIAAAQMADRYIM 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDLVDEAG+R I E DD ++R + S
Sbjct: 392 DRFLPDKAIDLVDEAGARMRIRRMTAPVELHEL------DDKVADLRRQKE-------SA 438
Query: 559 LKYDDV--VASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ D A++ D T E V + D D + +G +IA V ++ +GIPV +
Sbjct: 439 IDDQDFERAAALRDEEKRLTEERVAKEKAWREGDADVISELGEAEIAEVLAMSTGIPVLK 498
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L+ +EE L +RV+GQ++AV AIS++++R+R GLKDP RP + +F GPTGVG
Sbjct: 499 LTEAESHKLLNMEEALHQRVVGQEDAVKAISQSIRRTRSGLKDPKRPGGSFIFAGPTGVG 558
Query: 672 KTELAKSLAACYF 684
KTELAK+LA F
Sbjct: 559 KTELAKALAEFLF 571
>gi|229821882|ref|YP_002883408.1| ATPase AAA-2 domain-containing protein [Beutenbergia cavernae DSM
12333]
gi|229567795|gb|ACQ81646.1| ATPase AAA-2 domain protein [Beutenbergia cavernae DSM 12333]
Length = 843
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 254/617 (41%), Positives = 369/617 (59%), Gaps = 59/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEARLLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDIVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V+ I T +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVIEIIGEGQQAPT-------------GHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + +QG +G+EP A G E SG
Sbjct: 108 ILLGLIREGEGVAAQVLGKLGADLNRVRQQVLQLVQG---YQGKEPVAAGGPTEGQPSG- 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ L+QF +LT A E +DPVIGRETE +R++Q+L RRTKNNP+L+G
Sbjct: 164 -----------SAVLDQFGRNLTQAAREGKLDPVIGRETETERVMQVLSRRTKNNPVLVG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 213 EPGVGKTAVVEGLAQDIVRGDVPETLKDKQLYTLDLGALVAGSRYRGDFEERLKKVLKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIILFIDEIHTLVGAGAA----EGA-IDAASILKPMLARGELQTIGATTLDEYRKY 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS A+ IL G+R++YEAHH T A+ AA L+ RY++
Sbjct: 328 VEKDPALERRFQPITVNEPSLTHAIDILKGVRDRYEAHHRVSITDAALVAAATLADRYVN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAM--- 550
DRYLPDKAIDL+DEAG+R I ++ PP DD E R +
Sbjct: 388 DRYLPDKAIDLIDEAGARLRIRR-----------MTAPPELRELDDQIAETRRSKESAID 436
Query: 551 -HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ + +RL+ ++ T+ + + D D A V + IA V + +GIPV
Sbjct: 437 DQDFERAARLRDEEKQL----TNRRLDREKAWKSGDLDAVAEVDEELIAEVLAASTGIPV 492
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR++GQ+ AV A+S+A++R+R GLKDP RP + +F GPTG
Sbjct: 493 FKLTEEESSRLLRMEDELHKRIVGQEAAVKALSQAIRRTRAGLKDPKRPGGSFIFAGPTG 552
Query: 670 VGKTELAKSLAACYFGS 686
VGKT LA++LA FG
Sbjct: 553 VGKTLLARTLAEFLFGD 569
>gi|374992943|ref|YP_004968442.1| chaperone ATPase [Desulfosporosinus orientis DSM 765]
gi|357211309|gb|AET65927.1| ATPase with chaperone activity, ATP-binding subunit
[Desulfosporosinus orientis DSM 765]
Length = 813
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 257/602 (42%), Positives = 359/602 (59%), Gaps = 34/602 (5%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVS 143
R+TERA K + +Q EAK +G +V T+H+LLGLI E G+ +D A+
Sbjct: 4 RYTERAEKVLSIAQEEAKRMGHQVVGTEHILLGLIQEGEGIAAQALLGMNVDLAK----- 58
Query: 144 IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGL 203
+ G+P + A++ F+ K+V E A E + + N+I EH+ LGL
Sbjct: 59 -----IRTQVEQLTGVGQPHN--AEVGFTPRVKKVLELANEEAYRQEVNYIGTEHLLLGL 111
Query: 204 FTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALK 263
+G A R+L L V + V L GEL +E P + A K
Sbjct: 112 IMEGEGIAARILANLNVSPERVWKQIVKLLGGEL-EEAAIP----------VPNSVTASK 160
Query: 264 SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323
+ G AL +F DLT +A E +DPVIGRE EI+R+IQ+L RRTKNNP L+GE GVG
Sbjct: 161 NSGSVNTPALNEFGRDLTLQAREGRLDPVIGREKEIERVIQVLSRRTKNNPALIGEPGVG 220
Query: 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGD 383
KTAIAEGLA IV VP L +KR+++LD+ ++AG+K RGE E R+ ++ EI+ G+
Sbjct: 221 KTAIAEGLAQGIVGNRVPEILSNKRVITLDLSAMVAGSKYRGEFEERLKKVMEEIRADGN 280
Query: 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDK 443
+ILFIDE+HTLIG+G +D +N+LKP+L RGELQCI +TT +E+R EKD
Sbjct: 281 IILFIDELHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLEEYRKYIEKDS 335
Query: 444 ALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503
AL RRFQP+ + EP+ E+A+ IL GLR++YEAHH K T EAI AA LS RYISDR+LP
Sbjct: 336 ALERRFQPISVGEPTVEEAIVILRGLRDRYEAHHRIKITDEAIEAAARLSDRYISDRFLP 395
Query: 504 DKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDD 563
DKAIDL+DEA SR + F + + L + D +E + E + + + +
Sbjct: 396 DKAIDLMDEAASRVRLASFTAPPDLKQ--LEEEADRLKKEKEAAVSSQEFEKAAEFRDKE 453
Query: 564 VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGL 623
+E+ + + E A+V DDIA + + W+GIPV+++ +E L+ L
Sbjct: 454 ----QKIRAELAEQRGAWQNQRNKENAMVTADDIAQIVASWTGIPVKKLAEEESERLLHL 509
Query: 624 EEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683
E+ L +R++GQD+AVAA++RAV+R+R GLKDP RP + +F GPTGVGKTEL ++LA
Sbjct: 510 EDLLHQRLVGQDDAVAAVARAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELGRALAEGM 569
Query: 684 FG 685
FG
Sbjct: 570 FG 571
>gi|410666747|ref|YP_006919118.1| chaperone protein ClpB [Thermacetogenium phaeum DSM 12270]
gi|409104494|gb|AFV10619.1| chaperone protein ClpB [Thermacetogenium phaeum DSM 12270]
Length = 820
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 259/631 (41%), Positives = 362/631 (57%), Gaps = 87/631 (13%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
++ RFTERA K + +Q EA+ LG V T+HLLLGL+ E G+ +DK R
Sbjct: 2 LYGRFTERAQKVLYLAQDEARRLGHPAVGTEHLLLGLLREGEGIAARALQALGVDLDKVR 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I A + + P K+V E A E R +G +++ EH
Sbjct: 62 KEVEKIV----------APGEARLIGEVGLTP---RAKKVLELAQEEGRRQGVSYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A R+L G+ ++ + + L G
Sbjct: 109 ILLGLIREGEGVAARILLAQGLSLDKVRRQVLMLLGG----------------------- 145
Query: 259 TAALKSPGRTRASA---------LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRR 309
SPG +A A L++ DLT A E +DPVIGRE EI+R+IQ+L RR
Sbjct: 146 -IGPVSPGHPQAGASRRASQTPTLDELGRDLTQLAREGKLDPVIGREQEIERVIQVLSRR 204
Query: 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEA 369
TKNNP L+GE GVGKTAIAEGLA RIV+ +VP L KR+++LDM ++AG K RGE E
Sbjct: 205 TKNNPCLIGEPGVGKTAIAEGLAQRIVENKVPEILADKRVVTLDMSSVVAGTKYRGEFEE 264
Query: 370 RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429
R+ +I EI+ +G++ILFIDEVHTL+G+G +D +N+LKP+L RGELQCI +
Sbjct: 265 RLRKVIDEIRNAGNIILFIDEVHTLVGAGAA-----EGAIDAANILKPALARGELQCIGA 319
Query: 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489
TT DE+R EKD AL RRFQPV++ EP+ E+ + IL GLR++YEAHH K T A+ AA
Sbjct: 320 TTLDEYRKNIEKDAALERRFQPVMVGEPTVEETIEILRGLRDRYEAHHRVKITDGALKAA 379
Query: 490 VHLSARYISDRYLPDKAIDLVDEAGSRAHIELF--------------KRKKEQQTCILSK 535
LS RYI+DR+LPDKAIDL+DEA SR ++ + + +KE+++ ++S
Sbjct: 380 ARLSDRYITDRFLPDKAIDLMDEAASRVRLKAYTAPPAVKELEEKLERLQKEKESAVVS- 438
Query: 536 PPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPD 595
QE ++ + Q R + + + ++ E+ + ++V +
Sbjct: 439 ------QEFEKAASLRDQEQQVREELEKIKSNWVQRKEL-------------DQSIVTDE 479
Query: 596 DIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDP 655
DIAA+ S W+GIPV ++ +E L+ +EE L +RVIGQDEAV A++RA++RSR GLKDP
Sbjct: 480 DIAAIISSWTGIPVSKLQEEESERLLRMEEILHQRVIGQDEAVKAVARAMRRSRAGLKDP 539
Query: 656 NRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
RP + +F GPTGVGKTELA++LA FG
Sbjct: 540 KRPIGSFIFLGPTGVGKTELARALAEALFGD 570
>gi|340359190|ref|ZP_08681685.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Actinomyces
sp. oral taxon 448 str. F0400]
gi|339885200|gb|EGQ74938.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Actinomyces
sp. oral taxon 448 str. F0400]
Length = 853
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 258/616 (41%), Positives = 369/616 (59%), Gaps = 61/616 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA++L + + T+HLLLGLI E LES I++D R
Sbjct: 1 MFERFTDRARRVVVLAQDEARALNHNYIGTEHLLLGLIHEGEGVAAKALESMDISLDAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
VV I Q P + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 GQVVEII----------GEGQSAP---SGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D++ + + L G EG+E A G SGK
Sbjct: 108 ILLGLLREGEGVAAQVLTKLGADLSTVRQTVMQMLSG---YEGKETVTAGG------SGK 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ L+QF +LTA A E +DPVIGR E++R++QIL RRTKNNP+L+G
Sbjct: 159 EGVPSG-----SAILDQFGRNLTAAAREGKLDPVIGRHKEMERVMQILSRRTKNNPVLIG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGL+ +V +VP L K++ SLDMG L+AG++ RG+ E R+ ++ E+
Sbjct: 214 EPGVGKTAVVEGLSQAVVHGDVPETLRDKQLYSLDMGSLVAGSRYRGDFEERLKKVLKEV 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT +E+R +
Sbjct: 274 RTRGDIVLFIDEIHTLVGAGAA----EGA-VDAASILKPMLARGELQTIGATTLEEYR-K 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + +PS E+ + IL GLR++YEA H T EAI AA L+ RYI+
Sbjct: 328 IEKDAALERRFQPVTVDQPSIEETIGILNGLRDRYEAFHRVVITDEAIEAAAKLADRYIN 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQA-MHEVVQGS 557
DR+LPDKAIDL+DEAG+R I +R ++ PP E+R + + EV +
Sbjct: 388 DRFLPDKAIDLIDEAGARLRI---RR--------MTAPP-----ELREIDDRIAEVKREK 431
Query: 558 RLKYDDV----VASMGDTSEIVVE-----SSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
DD A++ D + E D D+ A V +A V ++ +GIP
Sbjct: 432 ESAIDDQDFERAAALRDDERRLAEERENKEEAWKTGDLDQVAEVDESLVAEVLAMSTGIP 491
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V +IT E L+ +E +L KR+IGQD+A+ A+S++++R+R GLKDP RP + +F GPT
Sbjct: 492 VVKITEAESAKLLNMEAELHKRIIGQDKAIQALSKSIRRTRAGLKDPKRPGGSFIFAGPT 551
Query: 669 GVGKTELAKSLAACYF 684
GVGKTELAK+LA F
Sbjct: 552 GVGKTELAKALAEFLF 567
>gi|317507816|ref|ZP_07965517.1| ATPase [Segniliparus rugosus ATCC BAA-974]
gi|316253858|gb|EFV13227.1| ATPase [Segniliparus rugosus ATCC BAA-974]
Length = 842
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 257/616 (41%), Positives = 372/616 (60%), Gaps = 53/616 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ S +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQGPSV-HIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D++ + + L G + G+EP A G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLSRVRQQVIQLLSG-YSGGGKEPEAA------GAGGR 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LT A + +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 161 GGEAGTP--STSLVLDQFGRNLTRAALDGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 218
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 219 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 278
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 279 NSRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 333
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 334 IEKDAALERRFQPVQVGEPSVEHTIEILKGLRDRYEAHHRVSITDSALAAAASLADRYIN 393
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAG+R I ++ PPD ++ ++I + E
Sbjct: 394 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEQIANTRRQKE---- 438
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPV 609
S + D A + D+ + +V + D D A V + IA V + W+GIPV
Sbjct: 439 SAIDEQDFEKAAGLRDSEKKLVAQRAEREKQWRSGDMDVVAEVDEEQIAEVLANWTGIPV 498
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T +E L+ +E++L KR+IGQ +AVAA+++A++R+R GLKDP RP+ + +F GP+G
Sbjct: 499 FKLTEEETARLLRMEDELHKRIIGQRDAVAAVAKAIRRTRAGLKDPKRPSGSFIFAGPSG 558
Query: 670 VGKTELAKSLAACYFG 685
VGKTEL+K+LA FG
Sbjct: 559 VGKTELSKALANFLFG 574
>gi|269218173|ref|ZP_06162027.1| negative regulator of genetic competence ClpC/MecB [Actinomyces sp.
oral taxon 848 str. F0332]
gi|269212301|gb|EEZ78641.1| negative regulator of genetic competence ClpC/MecB [Actinomyces sp.
oral taxon 848 str. F0332]
Length = 861
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/620 (40%), Positives = 366/620 (59%), Gaps = 64/620 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+FERFT+RA + ++ +Q EA++L + + T+H LLGLI R G LE+ IT+D
Sbjct: 1 MFERFTDRARRVIVLAQDEARNLKHNYLGTEHFLLGLI---REGEGVAAKALEALDITLD 57
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
+ R V+ I Q P + +PF+ K+V E A+ G+++I
Sbjct: 58 EVRAQVIDII----------GEGQEPP---SGHIPFTPRAKKVIEYAMREGLQLGHSYIG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP-SLAKGVRENS 254
EH+ LGL DG A +VL +LG D+ + + + G +G+EP + G RE +
Sbjct: 105 TEHLLLGLTREPDGVAAQVLTKLGADMTRVRSQVNQLISG---FQGKEPVGVGGGAREGT 161
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+G T L+Q+ +LT A + +DPVIGR E +R++Q+L RRTKNNP
Sbjct: 162 KAGSTV------------LDQYGRNLTQSARDHKLDPVIGRHMETERVMQVLSRRTKNNP 209
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTA+ EGLA I +VP L K++ SLDMG L+AG++ RG+ E R+ +
Sbjct: 210 VLIGEPGVGKTAVVEGLAQAIASGDVPETLKDKQLYSLDMGSLVAGSRYRGDFEDRMKKI 269
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI GD++LFIDE+H+L+G+G LD ++LLKP + RGELQ I +TT DE
Sbjct: 270 LKEINTRGDIVLFIDEIHSLVGAGAA-----EGALDAASLLKPMMARGELQVIGATTLDE 324
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + +P+ V IL GLR++YE+ H T +AI+ A L+
Sbjct: 325 YRKHIEKDAALERRFQPIQVEQPTVAQTVEILKGLRDRYESFHRVTITDDAIDTAASLAD 384
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHE 552
RY++DR+LPDKAIDL+DEAG+R I RK ++ PP+ + + I +V+ E
Sbjct: 385 RYVNDRFLPDKAIDLIDEAGARLAI----RK-------MTAPPELREIDERIASVRREKE 433
Query: 553 -VVQGSRLKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSG 606
+ G + AS+ D + + E D D +VV D + V S+ +G
Sbjct: 434 AAIDGQDFEK---AASLRDEEQRLGEKRAEREQAWKDGDMDIVSVVDEDLVTEVLSMATG 490
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV +++ E L+ +EE+L KRVIGQ+EAV A+S+A++R+R GLKDPNRP + +F G
Sbjct: 491 IPVFKLSEAESAKLLRMEEELHKRVIGQNEAVVALSQAIRRTRAGLKDPNRPGGSFIFAG 550
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAK+LA FG
Sbjct: 551 PTGVGKTELAKALAEFLFGD 570
>gi|319789343|ref|YP_004150976.1| ATPase AAA-2 domain protein [Thermovibrio ammonificans HB-1]
gi|317113845|gb|ADU96335.1| ATPase AAA-2 domain protein [Thermovibrio ammonificans HB-1]
Length = 824
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 255/607 (42%), Positives = 355/607 (58%), Gaps = 47/607 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFT +A + +I ++ +A SL + + T+H+LL L+ ED N L + I KAR
Sbjct: 1 MFERFTTKARQIIIKAKEQAVSLRCEKLGTEHILLSLLKEDEITNQIL-ARYNISKAR-- 57
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFS-SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
Q+ + Q P+ + FS +RV E AVE ++ ++ PEH+
Sbjct: 58 ---------IQEIILSQIQPAPYEVDINTVTFSTEARRVLEHAVEEAKLMASPYVGPEHL 108
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
+ L G AGR+L+ G+D H L+ E+A +L KG+ T
Sbjct: 109 FIALAKEKLGLAGRILRSYGLD--HYT------LRREVA------TLLKGI--------T 146
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
K P ++ L++F DLT A E +DPVIGRE EI+R+ IL RR KNNP+L+GE
Sbjct: 147 TEKKGPKKSSTPNLDKFGRDLTKLAEEGKLDPVIGREKEIERVTHILARRRKNNPVLVGE 206
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA++I + EVP L +KRI+SLDM L+AG K RG+ E R+ ++ E++
Sbjct: 207 PGVGKTAIVEGLALKIAKGEVPEKLKNKRIVSLDMASLIAGTKYRGQFEERLKAIVKELE 266
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
+ DVILFIDE+HTL+G+G +G+ +D SN+LKPSL RGE+Q I +TT DE+R
Sbjct: 267 NNKDVILFIDELHTLVGAGAA----EGS-MDASNILKPSLSRGEIQVIGATTIDEYRKYI 321
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPV++ EPS ED + IL GL+ K+E HN T EAI AV LS RYI+D
Sbjct: 322 EKDGALERRFQPVMVEEPSVEDTIEILKGLKPKFEEFHNVVITDEAIERAVKLSVRYIND 381
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559
R LPDKAID++DEAG++A +++ K+ + L K ++ AM E +
Sbjct: 382 RKLPDKAIDIIDEAGAKAQLQV--SAKDDRVRALEKKIEEVKALKEEALAMAEYEKAHEY 439
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERML 619
K ++ E V+ + + +LW+GIPVQQ+ E
Sbjct: 440 KQKELKLLAELEE----LKREARLRQKQERVVIDEKKVEEIVALWTGIPVQQLQEKEAEK 495
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLK-DPNRPTAAMLFCGPTGVGKTELAKS 678
L LEE+L KRV+GQ EAV A+++A+KRSR+G++ + NRP LF GPTGVGKTELAK+
Sbjct: 496 LKRLEEELHKRVVGQHEAVEAVAKAIKRSRLGIRANVNRPIGCFLFLGPTGVGKTELAKA 555
Query: 679 LAACYFG 685
LA FG
Sbjct: 556 LAEYLFG 562
>gi|385800597|ref|YP_005837001.1| ATPase [Halanaerobium praevalens DSM 2228]
gi|309389961|gb|ADO77841.1| ATPase AAA-2 domain protein [Halanaerobium praevalens DSM 2228]
Length = 806
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 243/613 (39%), Positives = 365/613 (59%), Gaps = 60/613 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F +FTERA K + +++EA L V T+H+L GL+AE + +++G+ +
Sbjct: 1 MFAKFTERARKVLSIAEQEALKLKHSYVGTEHILYGLVAEGQAIAARSLIDNGLKEEIVE 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
++ + ++ + + +K+V A++ +R G+N+I EH
Sbjct: 61 SKIIEMIGEGEDE-------------VEGSIGLTPRSKKVLNLAMDEARKMGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A R+L L D++++ + L G++ + + +K + N+
Sbjct: 108 LLLGLIREGEGVAVRILMDLDTDISNIKEEIIDLLGGKINRRRK----SKKINNNT---- 159
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
L+++ DLT A E +DPV+GR+ EI R+IQ+L RRTKNNP+L+G
Sbjct: 160 ------------KNLDEYSRDLTEMAKENKLDPVVGRDEEINRVIQVLSRRTKNNPVLIG 207
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAI EGLA RI+ VP LL+KR++SLD+ L+AG+K RGE E R+ ++++EI
Sbjct: 208 EPGVGKTAIIEGLAQRIISESVPELLLNKRVVSLDLSSLVAGSKYRGEFEKRLKSVMNEI 267
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
++G++ILFIDE+HTL+G+G +D +N+LKP+L RGELQ I +TT DE+R
Sbjct: 268 IENGNIILFIDEMHTLVGAGAA-----EGAIDAANILKPALARGELQAIGATTLDEYRKY 322
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQ VL+ E S E+A+ IL GLR+ YEAHH K T +AI AV LS RYIS
Sbjct: 323 IEKDAALERRFQSVLVEENSIEEAIDILKGLRDPYEAHHKVKITDQAIKDAVLLSNRYIS 382
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEA S+ + ++PP+ ++++R E + +
Sbjct: 383 DRFLPDKAIDLIDEAASKVRL-----------SKSTRPPE--FKQLRKKLEEVEKEKEAA 429
Query: 559 LKYDDV--VASMGDTSEIVVE--SSLPSASDDDE---PAVVGPDDIAAVASLWSGIPVQQ 611
+K + A M D + + L ++ ++++ AVV +DIA + S W+GIPV +
Sbjct: 430 IKNQEFEKAARMRDQEKEFSQELEELKNSWENEKGKADAVVISEDIAEIVSSWTGIPVTK 489
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+ E L+ LE +L +RVIGQDEA+ A+S AV+R+R GLK P RP + +F GPTGVG
Sbjct: 490 LEEAETEKLLRLESELHERVIGQDEAINAVSEAVRRARAGLKAPKRPIGSFIFLGPTGVG 549
Query: 672 KTELAKSLAACYF 684
KTELAK+LA F
Sbjct: 550 KTELAKTLAETMF 562
>gi|303229000|ref|ZP_07315810.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Veillonella
atypica ACS-134-V-Col7a]
gi|302516414|gb|EFL58346.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Veillonella
atypica ACS-134-V-Col7a]
Length = 816
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 259/607 (42%), Positives = 362/607 (59%), Gaps = 46/607 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ +RFT+ A + + F+Q A LG D V T+H+L+GLI +++G+ E
Sbjct: 1 MMQRFTDDAQRVISFAQEAALELGHDYVGTEHVLIGLIK--------VKNGVAAKALNE- 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + T +D ++ +G +S+ M + K V E AVE + +N++ EHI
Sbjct: 52 -LGLSAETIIEDVEEHIGRGNKKASSVYMTPRV--KHVLELAVEVANHMNHNYVGTEHIL 108
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL + G A +L+ + N + V ++ L A+ ++NS G+
Sbjct: 109 LGLLSDGGGVAVGILRNHNIRANDI----VDTIRTILGSSDSASHSAEDRKDNSSLGE-- 162
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L F DL A + IDPVIGR+ EI R+IQIL RRTKNNP+L+GE
Sbjct: 163 ------------LADFGTDLNESAKQGKIDPVIGRDKEIARVIQILSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RIV VP L +KRI+SL + ++AGAK RGE E R+ I E+QK
Sbjct: 211 GVGKTAIAEGLAQRIVNGNVPEILRNKRIISLSISSMLAGAKYRGEFEERLKKAIDEVQK 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
D+I+FIDE+HTL+G+G +G +D +N+LKP+L RGE Q I +TT DE++ E
Sbjct: 271 HDDMIIFIDEIHTLVGAG----ATEG-AMDAANILKPALARGEFQVIGATTLDEYKKHIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPVL+ EPS+EDA+ IL GLR++YEA H K T EA+ AAV LS+RYI+DR
Sbjct: 326 KDAALERRFQPVLVGEPSEEDALEILKGLRDRYEAFHKAKITDEALEAAVSLSSRYITDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAID+VDEA S+ +++F + + L D +E E + + ++
Sbjct: 386 FLPDKAIDVVDEAASKVRMKVFSAAPDVKA--LETQLADVKKEKEAAVTAQEFEKAAEMR 443
Query: 561 YDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
++ + + D E+S D VV +DIA+V + W+GIPV +I +E
Sbjct: 444 DEEKCIEKEINDKKNAAKENS-------DAKLVVTDEDIASVVAQWTGIPVSKIAQEESE 496
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ LEE+L KRVIGQDEAV A+S+AV+R+R GLKDP RP + LF GPTGVGKTELA++
Sbjct: 497 SLLHLEEELHKRVIGQDEAVVAVSKAVRRARAGLKDPKRPIGSFLFLGPTGVGKTELARA 556
Query: 679 LAACYFG 685
LA FG
Sbjct: 557 LAVALFG 563
>gi|163783011|ref|ZP_02178006.1| ATP-dependent Clp protease [Hydrogenivirga sp. 128-5-R1-1]
gi|159881691|gb|EDP75200.1| ATP-dependent Clp protease [Hydrogenivirga sp. 128-5-R1-1]
Length = 813
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 250/614 (40%), Positives = 364/614 (59%), Gaps = 64/614 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKARE 139
+FE+FTERA + ++ ++ EA LG + ++H+LL LI E+ P L G+T DK R+
Sbjct: 1 MFEKFTERARQVILQAREEALDLGHSYLGSEHILLALIKEEDIPTLVLSRFGLTPDKVRK 60
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
A++ Q S ++ F+ KRV E AVE +R + F+ PEH+
Sbjct: 61 AIM---------------GQVNRGSHTGEILFAPDAKRVIEFAVEEARILHHQFVGPEHL 105
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
+G+ G GR+L+ G+D E S+ + V + I G+
Sbjct: 106 LIGIVREKTGLGGRILRGFGLD---------------------EYSVRREVLQ--ILGEL 142
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+S L++F DLT A E +DPVIGRE EI+R++QIL RR KNNP+LLG+
Sbjct: 143 PPQESVKYAPTPNLDRFSRDLTQMAREGKLDPVIGREREIERVVQILVRRRKNNPVLLGD 202
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA RI EVP LL+KR+++LD+ L+AG K RG+ E R+ ++ E++
Sbjct: 203 PGVGKTAIVEGLAQRIANKEVPEPLLNKRVVALDLAALVAGTKYRGQFEERLKNILKELE 262
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
K+ +VILFIDE+HTL+G+G+ +G+ +D SN+LKP+L RGE+Q I +TT DE+R
Sbjct: 263 KAPNVILFIDEIHTLVGAGSA----EGS-IDASNMLKPALARGEIQVIGATTLDEYRKYI 317
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPVL+ PS+ED V+IL GL++K+E H ++T EAI AV LS +YI+D
Sbjct: 318 EKDGALERRFQPVLVDPPSEEDTVQILYGLKKKFEEFHGVEYTPEAIEKAVSLSVKYITD 377
Query: 500 RYLPDKAIDLVDEAGSRAHI-------ELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHE 552
R LPDKAID+VDE+G+ + EL + ++ + K Q+ + +
Sbjct: 378 RNLPDKAIDVVDESGALVKLKAMDLPPELKELEERIKELEKEKEEAANEQDYEKAANIRD 437
Query: 553 VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
R K++++ A E D P V +D+A V + W+GIPV+++
Sbjct: 438 EELRLRAKFENLKAKWKQDME------------KDRPKVTA-EDVAEVVARWTGIPVRRV 484
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+ L+ +E++LKKRV+GQD+A+ AI++A++RSRVGLK +RP LF GPTGVGK
Sbjct: 485 HESDMEKLLHIEDELKKRVVGQDDAIKAIAKAIRRSRVGLKGKHRPIGVFLFLGPTGVGK 544
Query: 673 TELAKSLAACYFGS 686
TE AK+LA FG+
Sbjct: 545 TETAKALAEYLFGT 558
>gi|383788301|ref|YP_005472869.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Caldisericum
exile AZM16c01]
gi|381363937|dbj|BAL80766.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
[Caldisericum exile AZM16c01]
Length = 814
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 248/611 (40%), Positives = 350/611 (57%), Gaps = 53/611 (8%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIA--EDRHPNGFLESGITIDKARE 139
+ TERA KA++ +Q EA +LG D + T+HLLLGLI E N + G+ D+ E
Sbjct: 3 WNNLTERAQKAILIAQEEAHNLGNDYLGTEHLLLGLIKVEEGIAYNAIISMGVDPDEVVE 62
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ + N GK P KRV E A + + G N+I+ EHI
Sbjct: 63 RIENFIKENRN-------FTGKTSDEVILTP---RAKRVLELAEREAINLGDNYISTEHI 112
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
L + G ++L+ LGVD+ S + G + + KT
Sbjct: 113 LLAILHEGGGVGVKILQDLGVDIQKFEETIYSMI---------------GEKATKDTMKT 157
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+ + T+ L+QF DLT A+ +DPVIGRE EI+R+I+IL RR KNNP ++G+
Sbjct: 158 SEFRE---TKTPTLDQFSRDLTYLATRGELDPVIGREAEIERVIEILMRRKKNNPAIIGD 214
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAI EGLA +I +VP L KRI+SLD+ ++AG K RGE E R+ ++ E+
Sbjct: 215 PGVGKTAIVEGLAQKIADNDVPDLLKGKRIVSLDLASVIAGTKYRGEFEERMKKILKEVA 274
Query: 380 KSG-DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
K+ +VILFIDE HTL+G+G +D SN+LKPSL GE+Q I +TT E+R
Sbjct: 275 KTNRNVILFIDEFHTLVGAGAAE-----GAIDASNILKPSLASGEIQVIGATTLKEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EPS E+A+ IL G+RE+YE H K EAI AV LS +YI+
Sbjct: 330 VEKDPALERRFQPVYVKEPSIEEAIEILKGIRERYEKFHGVKIPDEAIELAVKLSVKYIN 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAID++DEA +R ++L K + ++ K D R QA+ E
Sbjct: 390 DRFLPDKAIDVIDEASARLKLQLSKNSEIKELEKKIKEIKD-----RRFQAIREKRLLEA 444
Query: 559 LKYDDVVASMGDTSEIVV---ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+ + ++ + ++ ES +P ++ DD+ V SLW+G+P +++ D
Sbjct: 445 ERLREEEKNLLNALRLIANEKESEIP---------ILSEDDVRKVISLWTGVPTEKMIKD 495
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
E+ LV +EE+L KR++GQ+EAV A+SRA++R+R GLK+PN+P LF GPTGVGKTEL
Sbjct: 496 EKERLVHMEEELHKRIVGQEEAVRAVSRAIRRARSGLKNPNKPIGTFLFLGPTGVGKTEL 555
Query: 676 AKSLAACYFGS 686
AK+LA FG+
Sbjct: 556 AKTLAEFLFGN 566
>gi|282883060|ref|ZP_06291661.1| negative regulator of genetic competence ClpC/MecB [Peptoniphilus
lacrimalis 315-B]
gi|281297117|gb|EFA89612.1| negative regulator of genetic competence ClpC/MecB [Peptoniphilus
lacrimalis 315-B]
Length = 824
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 247/635 (38%), Positives = 365/635 (57%), Gaps = 74/635 (11%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE--DRHPNGFLESGITIDKA 137
S+F RF+E+A KA++F+Q EA+ + ++H+LLG+I E D + GI KA
Sbjct: 2 SMFGRFSEKAQKAILFAQAEARDERHSYIGSEHILLGIIKEGTDAGAQILDKLGIDYQKA 61
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
++A + I A QG +S + P TKR+FE + + ++ G ++ E
Sbjct: 62 KKATLDIV----------ATGQGPTVASVSYTP---RTKRIFELSFDVAKELGNRYVGTE 108
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LG+ G A VLKRLG+D+ +L ++ L + PS
Sbjct: 109 HLLLGILREGQGVAILVLKRLGIDIINLENDILNNLDEYEEENEENPS------------ 156
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+L +F +DL+ +A E IDP+IGRE EI+R+IQ+L RRTKNNP+L+
Sbjct: 157 ------------QESLNKFTIDLSKKAQEGKIDPIIGREKEIKRVIQVLSRRTKNNPVLI 204
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA++I + +VP + K+IM+LD+ L+AG+K RG+ E R+ ++ E
Sbjct: 205 GEPGVGKTAIAEGLALKIFKGDVPQIMADKKIMTLDVSALIAGSKYRGDFEERLKNVVKE 264
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+ + ++ILFIDE+H +IG+G +D SN+LKP L RG +Q I +TT E+R
Sbjct: 265 AENNKNIILFIDEMHVIIGAGAA-----EGAMDASNILKPMLTRGVIQIIGATTISEYRK 319
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD A RR P+ + EP+ ED+++IL+G+++KYE HHN +A++AAV LS RY+
Sbjct: 320 HIEKDPAFERRLMPITVEEPNVEDSIKILMGIKDKYEDHHNVTIGEDAVSAAVKLSDRYL 379
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRK--KEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
+DR+LPDKAIDL+DEA S+ IE +K +++ L K DD +R
Sbjct: 380 NDRFLPDKAIDLIDEAASKLKIESYKTPDFEKKYKEELKKVEDDKNMAVRNQDF------ 433
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDD----DEPAVVGPDDIAAVASLWSGIPVQQ 611
++ AS+ D E V+E A +D + V D IA + S WS +PV
Sbjct: 434 -------ELAASLRD-KEKVIEREYKEALEDFKKEESKKRVEVDLIANIVSEWSKVPVTN 485
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
+T E L L+E LKK+V GQD+A+ ++RAVKR+R+GLK PN+P + +F GPTGVG
Sbjct: 486 LTEKETERLKTLDEDLKKKVKGQDQAIDVLARAVKRARIGLKTPNKPIGSFIFVGPTGVG 545
Query: 672 KTELAKSLAACYFGSVRIHYLFFPSPFNSVKVALS 706
KT L K+LA FG SP N +++ +S
Sbjct: 546 KTFLTKTLAEELFG----------SPENMIRIDMS 570
>gi|384201060|ref|YP_005586807.1| Clp protease [Bifidobacterium longum subsp. longum KACC 91563]
gi|338754067|gb|AEI97056.1| Clp protease [Bifidobacterium longum subsp. longum KACC 91563]
Length = 871
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 246/615 (40%), Positives = 363/615 (59%), Gaps = 51/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+ +D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N AA G +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGN------AAPNGH-------IPFTPHAKQVLEFSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + + ++G G + ++
Sbjct: 108 ILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGN-------SGTGTGDGKGDLANA 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ ++ L+QF +LTA A+E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 161 GGVTDKQNKSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKIQAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ +A LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQA-MHEVVQ 555
DR LPDKAIDL+DEAG+R I KR L+ PP+ + ++I + A E ++
Sbjct: 396 DRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDEKIAKIAADKDEAIK 444
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWSGIPV 609
G + A + D E +E+ D D VV D IA V S +GIPV
Sbjct: 445 GQDFEK---AAELRDKQE-KLEADRKQKEDSWREGESDVKMVVDEDVIAEVISSTTGIPV 500
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTG
Sbjct: 501 FKLTQAESKKLLNMEAELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTG 560
Query: 670 VGKTELAKSLAACYF 684
VGKTELAK+LA F
Sbjct: 561 VGKTELAKTLAEFLF 575
>gi|427416269|ref|ZP_18906452.1| ATPase with chaperone activity, ATP-binding subunit [Leptolyngbya
sp. PCC 7375]
gi|425758982|gb|EKU99834.1| ATPase with chaperone activity, ATP-binding subunit [Leptolyngbya
sp. PCC 7375]
Length = 817
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 268/616 (43%), Positives = 376/616 (61%), Gaps = 63/616 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES----GITIDK 136
+F+ F ERA++ VI +Q EA L + T HLLLGL+A + PN ++ G+T+
Sbjct: 1 MFDFFVERAIRVVINAQEEAHRLNHPFMGTDHLLLGLMAAE--PNIAADTLKSLGMTLTA 58
Query: 137 AREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAP 196
A+ AV +D +G S + F+ ++V +++ ++ G N +
Sbjct: 59 AQIAV------------EDMIGKGSTRVSK-DIQFTPRCRQVLAQSLKEAQQLGKNAVDA 105
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EH+ L + +DGSA RVL +LGVD N L A V + G AK + +
Sbjct: 106 EHLLLAMLWDEDGSAMRVLSKLGVDCNKLRADLVEAISG-----------AKPIPTD--- 151
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
K P + L + V+LT A+ +DPVIGR EI+R+IQIL RRTKNNPIL
Sbjct: 152 ------KQPKLVKTPILNRCGVNLTELATLGRLDPVIGRHEEIERMIQILSRRTKNNPIL 205
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+AEGLA RI+ ++P ++++M+L++G L+AG K RGE E R+ T++
Sbjct: 206 IGEPGVGKTALAEGLAQRIIDRDLPESFHNRQVMTLNVGSLLAGTKYRGEFEERLKTIMV 265
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
E++ +G+VIL IDEVHTLIG+G+ +G+ LD +N+LKP+L RGELQCI +TT DE+R
Sbjct: 266 ELRSAGNVILVIDEVHTLIGAGS----PEGS-LDAANILKPALARGELQCIGATTLDEYR 320
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
FE+D ALARRFQPV+I EPS ++AV IL GLR YE HH+ + A+ AAV S RY
Sbjct: 321 QHFERDAALARRFQPVMIGEPSIDEAVLILQGLRSCYERHHHLTISDLALEAAVKFSNRY 380
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRK----KEQQTCI--LSKPPDDYWQEIRTVQAM 550
ISDR+LPDKAIDL+DEAGSR HI K++ K+ + +SK DD Q+ QA
Sbjct: 381 ISDRFLPDKAIDLIDEAGSRVHILSAKQQSFTSKDLSKALQQISKKKDDAIQKQEFAQA- 439
Query: 551 HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+QG ++ M +V ++S+ + A DIA V S W+GIPV
Sbjct: 440 -SALQGQEIEL------MKKIDPVVQDASVSRSGSVVSEA-----DIAYVVSSWTGIPVS 487
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++T E L+ +EE L +R+IGQ EAV AI+RA +R+R GL++PNRP A+ +F GPTGV
Sbjct: 488 KLTESESDQLLHMEEILHRRLIGQTEAVKAIARATRRARAGLQNPNRPIASFIFAGPTGV 547
Query: 671 GKTELAKSLAACYFGS 686
GKTEL K+LA +FG+
Sbjct: 548 GKTELVKALAISFFGA 563
>gi|425738218|ref|ZP_18856484.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
massiliensis S46]
gi|425480228|gb|EKU47396.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
massiliensis S46]
Length = 815
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 254/611 (41%), Positives = 356/611 (58%), Gaps = 54/611 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F R TERA + + +Q EA L + T+HLLLGL+ E + GI A +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE--------QDGI----AAKV 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ S + + G + ++ K+V E +++ +R +NF+ EHI
Sbjct: 50 LQSFDITEEKVTEEVEKLIGHGQDQMGTLHYTPRAKKVIELSMDEARKLHHNFVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL ++G A RV L +++ A V L G + +++KG
Sbjct: 110 LGLIRENEGVAARVFANLDLNITKARAQVVKAL-GSPEMNSKSQTVSKG----------- 157
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L+ DLT A + +DPV+GR EI R+I++L RRTKNNP+L+GE
Sbjct: 158 -------NNTPTLDSLARDLTVIAKDGTLDPVVGRNKEITRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++ EI +
Sbjct: 211 GVGKTAIAEGLAQAIVSNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIHQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQCI +TT DE+R E
Sbjct: 271 AGNVILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKHIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EP+ D +RIL GLR++YEAHH + EA+ AA LS RYISDR
Sbjct: 326 KDAALERRFQPVQVDEPTVPDTIRILEGLRDRYEAHHRINISDEALAAAAKLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDLVDEA S+ R K T K + Q+I V++ + S+ +
Sbjct: 386 FLPDKAIDLVDEASSKV------RLKSHTTPTNLK---ELEQQIEKVKSEKDAAVHSQ-E 435
Query: 561 YDDVVASMGDTSEIVVESSLPSASDD------DEPAVVGPDDIAAVASLWSGIPVQQITA 614
+++ A++ D + +E +A ++ + + +DIA V + W+GIP+ +I
Sbjct: 436 FENA-ANLRD-QQTKLEKQYETAKNEWRKDQGGQNTTLVEEDIAEVVAGWTGIPLTKINE 493
Query: 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTE 674
E L+ LE+ L +RVIGQ +AV +IS+AV+R+R GLKDP RP + +F GPTGVGKTE
Sbjct: 494 TESERLLNLEDTLHERVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 553
Query: 675 LAKSLAACYFG 685
LA++LA FG
Sbjct: 554 LARALAESMFG 564
>gi|336392462|ref|ZP_08573861.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus coryniformis subsp. torquens KCTC 3535]
Length = 830
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 251/607 (41%), Positives = 355/607 (58%), Gaps = 39/607 (6%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAREAVV 142
FT A ++ +Q +AK V T+HLLL L+ E G + IT D RE +
Sbjct: 5 FTPSAKNVLVLAQEQAKYFRHHAVGTEHLLLALVIETDGIAGKTLRQLSITDDDIREEIE 64
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
+ +T S +P++ K++ A + ++ G I EHI LG
Sbjct: 65 RFTGYGTSAET----------QSDTYLPYAPKAKQILSYAGDEAKRMGAMKIGTEHILLG 114
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
L DD A R+L LG+ ++ + + +L G + AK R N+ G+ A
Sbjct: 115 LLREDDILAARILTNLGLSLSKTRQMILKKL-------GVTDTAAK--RRNAPRGRQAQG 165
Query: 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322
+ + L+ DLT A E +DPV+GR E++R+IQ+L RRTKNNP+L+GE GV
Sbjct: 166 NNSSEGTPT-LDSLARDLTQLARENQMDPVVGRSKEVRRLIQVLSRRTKNNPVLIGEPGV 224
Query: 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG 382
GKTAIAEGLA +I+ +VP + KR+M LDMG L+AG K RGE E R+ +I EI K G
Sbjct: 225 GKTAIAEGLAQKIIAGDVPDDMAKKRLMMLDMGSLVAGTKYRGEFEDRLKKVIDEIYKDG 284
Query: 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD 442
VILFIDE+HTLIG+G G +G +D SN+LKP+L RGE+Q I +TT DE++ EKD
Sbjct: 285 HVILFIDELHTLIGAG----GAEG-AIDASNILKPALARGEMQVIGATTLDEYQKYIEKD 339
Query: 443 KALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502
AL RRF + ++EP+Q +A ILLGLR +YE HH T EA++ AV LS+RYISDR+L
Sbjct: 340 AALERRFATIQVNEPTQAEAEEILLGLRSRYEEHHGVTITDEAVHEAVVLSSRYISDRFL 399
Query: 503 PDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV---QGSRL 559
PDKAIDL+DE+ + ++ +K + SK + Q ++ +A E + + +
Sbjct: 400 PDKAIDLIDESAASVRLDAASKKTPE-----SKLETELNQLVKDKEAAIEAQDFEKAASI 454
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERML 619
+ ++ M ++ E + + + V PDDIA V S W+G+P+ Q+ E
Sbjct: 455 RENE----MALKDKLATEQAAAPTNGVRKDVKVTPDDIATVVSQWTGVPLTQLQKSETER 510
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ LE+ L KRVIGQ+EAV+A+SRA++R+R GLKDP RP + +F GPTGVGKTELAK+L
Sbjct: 511 LINLEKVLHKRVIGQEEAVSAVSRAIRRARSGLKDPQRPIGSFMFLGPTGVGKTELAKAL 570
Query: 680 AACYFGS 686
A FGS
Sbjct: 571 AEAMFGS 577
>gi|125534026|gb|EAY80574.1| hypothetical protein OsI_35755 [Oryza sativa Indica Group]
Length = 959
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 250/640 (39%), Positives = 375/640 (58%), Gaps = 73/640 (11%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
F+ FT++A+KA++ +Q EA+ LG ++ LLLG+I E +GI R A
Sbjct: 99 FDMFTDKAIKAIMMAQEEARRLGHHAAGSEQLLLGVIGEG--------TGIGAKVLRGAG 150
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+S+ + + A +G P ++ F+ + K V +A+ E + G+N++ EH+ L
Sbjct: 151 LSL--KAARAEVEKMAGRG-PGMVPMEIKFTPAAKNVLQASQEEAHQLGHNYVGSEHLLL 207
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL + G+A VLK D +++ + + + E +P A ++ G ++
Sbjct: 208 GLLR-EHGAALVVLKNFQADPSNIRSEVIRMISD--TSEDHQPVSA------AVGGGSST 258
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
K P L ++ +LT A E +DPV+GR+ ++ R++QIL RRTKNNP L+GE G
Sbjct: 259 TKIP------TLLEYGTNLTKLAEEGKLDPVVGRQNQVDRVVQILGRRTKNNPCLIGEPG 312
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSK---------------------------RIMSLDM 354
VGKTAIAEGLA RI VP + K ++++LDM
Sbjct: 313 VGKTAIAEGLAQRIAAGNVPETIDGKTNLQFEHYEIAKSYLSRLPERKHGNPFQVITLDM 372
Query: 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414
GLL+AG K RGE E R+ L+ E++++G++ILF+DEVHTL+G+G +G +D +N+
Sbjct: 373 GLLVAGTKYRGEFEERLKKLMDEVKQNGEIILFLDEVHTLVGAGAA----EGA-IDAANI 427
Query: 415 LKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE 474
LKP+L RGELQCI +TT DE+R EKD AL RRFQPV + EP+ ++ + IL GLRE+YE
Sbjct: 428 LKPALARGELQCIGATTIDEYRKHIEKDPALERRFQPVKVPEPTVDETIGILKGLRERYE 487
Query: 475 AHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI-------ELFKRKKE 527
HH ++T E++ AA LS +YISDR+LPDKAIDLVDEAGS + E + +K+
Sbjct: 488 IHHKVRYTDESLIAAARLSYQYISDRFLPDKAIDLVDEAGSLVRLRNAQLPDEAKELEKK 547
Query: 528 QQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDD 587
+ + K Q+ A+ +G ++ + S+ D S+ E S + +
Sbjct: 548 LKKIMAEKSEAIRSQDFEKAGAL----RGEEVELKSEIMSLVDKSK---EMSKAAVDSGE 600
Query: 588 EPA-VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVK 646
P V D+ + S W+G+PV+++T DE L+ +E L +R++GQDEAV AISRA++
Sbjct: 601 SPGPTVTEADVQHIVSSWTGVPVEKVTVDESSRLLAMESSLHRRIVGQDEAVTAISRAIR 660
Query: 647 RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
R+RVGL+DP RP A+ +F GPTGVGK+ELAK+LAA Y+GS
Sbjct: 661 RARVGLRDPRRPIASFIFAGPTGVGKSELAKALAAYYYGS 700
>gi|396583892|ref|ZP_10484401.1| Clp amino terminal domain protein [Actinomyces sp. ICM47]
gi|395548567|gb|EJG15807.1| Clp amino terminal domain protein [Actinomyces sp. ICM47]
Length = 822
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 266/620 (42%), Positives = 366/620 (59%), Gaps = 58/620 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI+E GI + R
Sbjct: 1 MFERFTDRARRVVVLAQDEARGLKHNYIGTEHLLLGLISEGEGVAAKALETMGIKGEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+V+ I KP +PF+ KRVFE ++ + G+N+I EH
Sbjct: 61 ASVIEIIGEGE-----------KPVE--GHIPFTPRAKRVFELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG--ELAKEGREPSLAKGVRENSIS 256
+ LGL +G A +VL + G D+ + + L G EGRE A
Sbjct: 108 LLLGLLKEGEGVAAQVLTKQGADLAQVRQTVIQMLSGYQRGDDEGRESVGAG-------- 159
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
P R+ ++ LEQF +LT A E +DPVIGR E++R++Q+L RRTKNNP+L
Sbjct: 160 --VGGSGGPERSNSAILEQFGRNLTQAARENKLDPVIGRRVEMERVMQVLSRRTKNNPVL 217
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTA+ EGLA IV +VP + K+I SLDMG L+AG++ RG+ E R+ ++
Sbjct: 218 IGEPGVGKTAVVEGLAQAIVHGDVPETIKDKQIYSLDMGSLVAGSRYRGDFEERLKKVLK 277
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
EI+ GD+ILFIDE+HTL+G+G +G+ +D + +LKP L RGELQ I +TT DE+R
Sbjct: 278 EIRTRGDIILFIDEIHTLVGAGAA----EGS-IDAAQMLKPMLARGELQTIGATTNDEYR 332
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQPV + EPS E+ V IL GLR++YEAHH T AI AA L+ RY
Sbjct: 333 KYIEKDAALERRFQPVKVEEPSVEETVEILKGLRDRYEAHHRVIITDAAIQAAAELADRY 392
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQ 555
ISDR+LPDKAIDLVDEAG+R I ++ PP E+R + + + EV +
Sbjct: 393 ISDRFLPDKAIDLVDEAGARLRIRR-----------MTAPP-----ELRELDEKIAEVRR 436
Query: 556 GSRLKYDD----VVASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG 606
DD AS+ D + E + + DE A VG +IA V ++ +G
Sbjct: 437 NKEAAIDDQDFEKAASLRDQESKLSEERKAKEEAWKGGESDEIAEVGDQEIAEVLAMSTG 496
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E++L KRVIGQDEAV A++++++R+R GLKDPNRP + +F G
Sbjct: 497 IPVVRLTQTETAKLLKMEDELHKRVIGQDEAVKALAQSIRRTRSGLKDPNRPGGSFIFAG 556
Query: 667 PTGVGKTELAKSLAACYFGS 686
PTGVGKTELAK+LA FG
Sbjct: 557 PTGVGKTELAKALAEFLFGD 576
>gi|429759543|ref|ZP_19292041.1| negative regulator of genetic competence ClpC/MecB [Veillonella
atypica KON]
gi|429179504|gb|EKY20751.1| negative regulator of genetic competence ClpC/MecB [Veillonella
atypica KON]
Length = 824
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 258/607 (42%), Positives = 363/607 (59%), Gaps = 46/607 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ +RFT+ A + + F+Q A LG D V T+H+L+GLI +++G+ E
Sbjct: 9 MMQRFTDDAQRVLSFAQEAALELGHDYVGTEHVLIGLIK--------VKNGVAAKALNE- 59
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + T +D ++ +G +S+ M + K V E AVE + +N++ EHI
Sbjct: 60 -LGLSAETIIEDVEEHIGRGNKKASSVYMTPRV--KHVLELAVEVANHMNHNYVGTEHIL 116
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL + G A +L+ + N + V ++ L + ++NS G+ A
Sbjct: 117 LGLLSDGGGIAVGILRNHNIRANDI----VDTIRTILGSSDSASHSGEDRKDNSSLGELA 172
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
F DL A + IDPVIGR+ EI R+IQIL RRTKNNP+L+GE
Sbjct: 173 --------------DFSTDLNESAKQGKIDPVIGRDKEIARVIQILSRRTKNNPVLIGEP 218
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RIV VP L +KRI+SL + ++AGAK RGE E R+ I E+QK
Sbjct: 219 GVGKTAIAEGLAQRIVNGNVPEILRNKRIISLSISSMLAGAKYRGEFEERLKKAIDEVQK 278
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
D+I+FIDE+HTL+G+G +G +D +N+LKP+L RGE Q I +TT DE++ E
Sbjct: 279 HDDMIIFIDEIHTLVGAG----ATEG-AMDAANILKPALARGEFQVIGATTLDEYKKHIE 333
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPVL+ EPS+EDA+ IL GLR++YEA H K T EA+ AAV LS+RYI+DR
Sbjct: 334 KDAALERRFQPVLVGEPSEEDALEILKGLRDRYEAFHKAKITDEALAAAVSLSSRYITDR 393
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAID+VDEA S+ +++F + + L D +E E + + ++
Sbjct: 394 FLPDKAIDVVDEAASKVRMKVFSAAPDVKA--LETQLADVKKEKEAAVTAQEFEKAAEMR 451
Query: 561 YDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
++ + + D ++ E+S D VV +DIA+V + W+GIPV +I +E
Sbjct: 452 DEEKRIEKEINDKKKVAKENS-------DAKLVVTDEDIASVVAQWTGIPVSKIAQEESE 504
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ LEE+L KRVIGQDEAV A+S+AV+R+R GLKDP RP + LF GPTGVGKTELA++
Sbjct: 505 SLLHLEEELHKRVIGQDEAVVAVSKAVRRARAGLKDPKRPIGSFLFLGPTGVGKTELARA 564
Query: 679 LAACYFG 685
LA FG
Sbjct: 565 LAVALFG 571
>gi|303231502|ref|ZP_07318232.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Veillonella
atypica ACS-049-V-Sch6]
gi|302513845|gb|EFL55857.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Veillonella
atypica ACS-049-V-Sch6]
Length = 816
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 259/607 (42%), Positives = 363/607 (59%), Gaps = 46/607 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ +RFT+ A + + F+Q A LG D V T+H+L+GLI +++G+ E
Sbjct: 1 MMQRFTDDAQRVISFAQEAALELGHDYVGTEHVLIGLIK--------VKNGVAAKALNE- 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + T +D ++ +G +S+ M + K V E AVE + +N++ EHI
Sbjct: 52 -LGLSAETIIEDVEEHIGRGNKKASSVYMTPRV--KHVLELAVEVANHMNHNYVGTEHIL 108
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL + G A +L+ + N + V ++ L A+ ++NS G+ A
Sbjct: 109 LGLLSDGGGVAVGILRNHNIRANDI----VDTIRTILGSSDSASHSAEDRKDNSSLGELA 164
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
F DL A + IDPVIGR+ EI R+IQIL RRTKNNP+L+GE
Sbjct: 165 --------------DFGTDLNESAKQGKIDPVIGRDKEIARVIQILSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RIV VP L +KRI+SL + ++AGAK RGE E R+ I E+QK
Sbjct: 211 GVGKTAIAEGLAQRIVNGNVPEILRNKRIISLSISSMLAGAKYRGEFEERLKKAIDEVQK 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
D+I+FIDE+HTL+G+G +G +D +N+LKP+L RGE Q I +TT DE++ E
Sbjct: 271 HDDMIIFIDEIHTLVGAG----ATEG-AMDAANILKPALARGEFQVIGATTLDEYKKHIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPVL+ EPS+EDA+ IL GLR++YEA H K T EA+ AAV LS+RYI+DR
Sbjct: 326 KDAALERRFQPVLVGEPSEEDALEILKGLRDRYEAFHKAKITDEALEAAVSLSSRYITDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAID+VDEA S+ +++F + + L D +E E + + ++
Sbjct: 386 FLPDKAIDVVDEAASKVRMKVFSAAPDVKA--LETQLADVKKEKEAAVTAQEFEKAAEMR 443
Query: 561 YDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
++ + + D + E+S D VV +DIA+V + W+GIPV +I +E
Sbjct: 444 DEEKRIEKEINDKKKAAKENS-------DAKLVVTDEDIASVVAQWTGIPVSKIAQEESE 496
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ LEE+L KRVIGQDEAV A+S+AV+R+R GLKDP RP + LF GPTGVGKTELA++
Sbjct: 497 SLLHLEEELHKRVIGQDEAVVAVSKAVRRARAGLKDPKRPIGSFLFLGPTGVGKTELARA 556
Query: 679 LAACYFG 685
LA FG
Sbjct: 557 LAVALFG 563
>gi|329767613|ref|ZP_08259134.1| hypothetical protein HMPREF0428_00831 [Gemella haemolysans M341]
gi|328839240|gb|EGF88824.1| hypothetical protein HMPREF0428_00831 [Gemella haemolysans M341]
Length = 824
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/624 (40%), Positives = 363/624 (58%), Gaps = 61/624 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAED-----RHPNGFLESGITID 135
++ RF E A+ + ++ EA G V T+HLLL +++ + + N + G+ D
Sbjct: 1 MYIRFNETALMVLTTAKEEANDFGVKAVGTEHLLLAMLSMNNTLACKTLNKY---GVYYD 57
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPF--SSAAKMPFSISTKRVFEAAVEYSRSRGYNF 193
R+ VV + +A +G F + K+ ++ R E + +++
Sbjct: 58 DFRKNVVDFY---------EAELEGTDFYRNVLMKIDYTNGAVRTIEKSQQFADDTSSFV 108
Query: 194 IAPEHIALGLFTVDDGSAGRVL-KRLGVDVNHLAAVAVSRL---QGELAKEGREPSLAKG 249
+ EH+ L L G+A R+L +LGV+V+ L L QG L+K L G
Sbjct: 109 VTSEHLLLSLLNEKTGTAVRLLTDKLGVNVDALITELFELLKQSQGLLSK------LFDG 162
Query: 250 VRENSISGKTAALKSPGRTRASA--LEQFCVDLTARASEELIDPVIGRETEIQRIIQILC 307
++ L++P + A L DLT A +DPV+ R+ EI R+I+IL
Sbjct: 163 FKK---------LEAPEDSSAKTKTLNSLAKDLTKDAFNNKLDPVLARDKEITRMIEILN 213
Query: 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGEL 367
RRTKNNP+L+GE GVGKTAI EGLA RIV VP LL KR+M LDMG L+AG K RGE
Sbjct: 214 RRTKNNPVLIGEPGVGKTAIVEGLAERIVSQNVPSNLLGKRVMVLDMGTLLAGTKYRGEF 273
Query: 368 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427
E R+ +I+EI+ +GD+ILFIDE+HT+IG+G G +G+ D SN+LKP+L RG +QCI
Sbjct: 274 EERLKNIITEIEDAGDIILFIDEIHTIIGAG----GTEGSA-DASNILKPALSRGLIQCI 328
Query: 428 ASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAIN 487
+TT +E+R FEKD AL RRFQP+ + EP+ ED+++IL GLR KYE HHN + EA++
Sbjct: 329 GATTTEEYRKYFEKDAALERRFQPIKVEEPNTEDSIKILEGLRHKYEEHHNVEILDEALD 388
Query: 488 AAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDDYWQ 542
AAV LS YI+DR LPDKAIDL+DEA S+ + +K ++ E + L+K D
Sbjct: 389 AAVKLSTTYITDRCLPDKAIDLIDEACSKVKLRFYKSPEKLKEYEDELSRLNKEKDR--- 445
Query: 543 EIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVAS 602
+ E+ R + + V++ + + +I + SL + + D +A V +
Sbjct: 446 --AVINQEFEIAAKKRDEVNQVISKI-EQFKISWQDSLSK-----DKIKISADHVAEVLA 497
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
W+G+PV ++T E L+ LEE L KRVIGQDEAV ++++AV+R+R G K PNRP +
Sbjct: 498 AWTGVPVTKLTETESERLLKLEEILHKRVIGQDEAVVSLAKAVRRARSGFKAPNRPIGSF 557
Query: 663 LFCGPTGVGKTELAKSLAACYFGS 686
+F GPTGVGKTELAKSL+ F S
Sbjct: 558 IFLGPTGVGKTELAKSLSEALFSS 581
>gi|212716932|ref|ZP_03325060.1| hypothetical protein BIFCAT_01876 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212660217|gb|EEB20792.1| hypothetical protein BIFCAT_01876 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 858
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 243/611 (39%), Positives = 361/611 (59%), Gaps = 43/611 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+T+D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGDGVAAKALASKGVTLDDTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N A G +PF+ ++V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGN------ATPNGH-------IPFTPHARQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ V++ L + + ++G KG + ++
Sbjct: 108 ILLGLIHEGEGVGTQVLIKMDVNLGELRSATIDLIRGN-------SGDGKGDGKGDLANA 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+T ++ L+QF +LTA A+ +DPVIGR +EI+R++ +L RRTKNNP+L+G
Sbjct: 161 GGVQDRRNQTGSAILDQFGRNLTAEAAAGKLDPVIGRSSEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKINAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS + + IL GLR +YE HH+ T A+ AA LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPSIAETIEILKGLRSRYENHHHVTITDGALQAAAELSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I L+ PP+ + + + E Q +
Sbjct: 396 DRHLPDKAIDLIDEAGARLRIRR-----------LTAPPELKELDTKIAKLAEEKDQSIK 444
Query: 559 LKYDDVVASMGDTSE-IVVESSLPSAS----DDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + D E + E +S + D VV D IA V S +GIPV ++T
Sbjct: 445 DQDFEKAAELRDKQEKLEAERKQKESSWREGESDVKMVVDEDVIAEVISQTTGIPVFKLT 504
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTGVGKT
Sbjct: 505 QAESKKLMTMESELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPSGSFIFAGPTGVGKT 564
Query: 674 ELAKSLAACYF 684
ELAK+LA F
Sbjct: 565 ELAKTLAEFLF 575
>gi|254446281|ref|ZP_05059757.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235]
gi|198260589|gb|EDY84897.1| ATPase, AAA family [Verrucomicrobiae bacterium DG1235]
Length = 834
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 245/605 (40%), Positives = 362/605 (59%), Gaps = 36/605 (5%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSI 144
FT RA + + +++EA + V T+H+LLGLI L G+ + ++ + +
Sbjct: 7 FTPRAQQVLALARKEADRFHHNYVGTEHILLGLIK--------LGQGVAVSVLQKMGLDL 58
Query: 145 WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLF 204
T + G +A +P++ K+V A + +++ ++++ EHI LGL
Sbjct: 59 --ETVRSAVEKQVGSGPEGKAAGSIPYTPRVKKVLALAGKEAKALNHSYVGTEHILLGLL 116
Query: 205 TVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKS 264
+G A RVLK L VD+ + L + + E E ++A G +N K A K+
Sbjct: 117 REGEGVAARVLKSLDVDIERTRNEILRELDPQFSGETEE-AIAPGRSQNQEDKKEA--KT 173
Query: 265 PGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGK 324
P AL+ F DLT A + +DPVIGR+ EI+R+IQILCRRTKNNP+L+GE+GVGK
Sbjct: 174 P------ALKAFGRDLTELARKGDLDPVIGRKNEIRRVIQILCRRTKNNPVLIGEAGVGK 227
Query: 325 TAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDV 384
TAI EGLA+ I VP L+ K++++LD+ L++AG K RG+ E R+ ++ EI+++G+V
Sbjct: 228 TAIVEGLALEIASGVVPEILIDKKVITLDLALMVAGTKYRGQFEERIKAVMDEIKRAGNV 287
Query: 385 ILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKA 444
I+FIDE+HT++G+G +D SN+ KP+L RGELQCI +TT +E+R EKD A
Sbjct: 288 IIFIDELHTIVGAGAA-----EGAMDASNIFKPALSRGELQCIGATTLNEYRKFIEKDSA 342
Query: 445 LARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504
L RRFQ V + P+ ED + IL G+R KYE HH FT E++ AA LS RYI+ R+LPD
Sbjct: 343 LDRRFQSVKVEAPNIEDTILILKGIRSKYEEHHKAVFTDESLVAAAKLSERYITSRFLPD 402
Query: 505 KAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYW---QEIRTVQAMHEVVQGSRLKY 561
KAID++DEAG+RA I+ R E +T L+K D+ +E + Q E K+
Sbjct: 403 KAIDVMDEAGARARIQSLNRPPEIET--LAKEVDEVCGKKEEAISKQHFEEAA-----KF 455
Query: 562 DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLV 621
D + E V+E+ S ++ V+ D++ V S W+G+P+Q++ E L+
Sbjct: 456 RDEEKRLRKQQEDVLEAW--KTSREENRIVIDEDEMLKVVSDWTGVPLQRLEKKETERLL 513
Query: 622 GLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAA 681
LE++L++ VIGQDEA AIS+A++RSR LKDP RP + +F GPTGVGKT LA++LA
Sbjct: 514 QLEKELQEIVIGQDEACVAISKALRRSRADLKDPKRPIGSFMFMGPTGVGKTFLARTLAE 573
Query: 682 CYFGS 686
FG
Sbjct: 574 KMFGD 578
>gi|62734225|gb|AAX96334.1| Clp amino terminal domain, putative [Oryza sativa Japonica Group]
gi|125576822|gb|EAZ18044.1| hypothetical protein OsJ_33590 [Oryza sativa Japonica Group]
Length = 959
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 250/640 (39%), Positives = 375/640 (58%), Gaps = 73/640 (11%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
F+ FT++A+KA++ +Q EA+ LG ++ LLLG+I E +GI R A
Sbjct: 99 FDMFTDKAIKAIMMAQEEARRLGHHAAGSEQLLLGVIGEG--------TGIGAKVLRGAG 150
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+S+ + + A +G P ++ F+ + K V +A+ E + G+N++ EH+ L
Sbjct: 151 LSL--KAARAEVEKMAGRG-PGMVPMEIKFTPAAKNVLQASQEEAHQLGHNYVGSEHLLL 207
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL + G+A VLK D +++ + + + E +P A ++ G ++
Sbjct: 208 GLLR-EHGAALVVLKNFQADPSNIRSEVIRMISD--TSEDHQPVSA------AVGGGSST 258
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
K P L ++ +LT A E +DPV+GR+ ++ R++QIL RRTKNNP L+GE G
Sbjct: 259 TKIP------TLLEYGTNLTKLAEEGKLDPVVGRQNQVDRVVQILGRRTKNNPCLIGEPG 312
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSK---------------------------RIMSLDM 354
VGKTAIAEGLA RI VP + K ++++LDM
Sbjct: 313 VGKTAIAEGLAQRIAAGNVPETIDGKTNLQFEHYEIAKSYLSRLPERKHGNPFQVITLDM 372
Query: 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414
GLL+AG K RGE E R+ L+ E++++G++ILF+DEVHTL+G+G +G +D +N+
Sbjct: 373 GLLVAGTKYRGEFEERLKKLMDEVKQNGEIILFLDEVHTLVGAGAA----EGA-IDAANI 427
Query: 415 LKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE 474
LKP+L RGELQCI +TT DE+R EKD AL RRFQPV + EP+ ++ + IL GLRE+YE
Sbjct: 428 LKPALARGELQCIGATTIDEYRKHIEKDPALERRFQPVKVPEPTVDETIGILKGLRERYE 487
Query: 475 AHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI-------ELFKRKKE 527
HH ++T E++ AA LS +YISDR+LPDKAIDLVDEAGS + E + +K+
Sbjct: 488 IHHKVQYTDESLIAAARLSYQYISDRFLPDKAIDLVDEAGSLVRLRNAQLPDEAKELEKK 547
Query: 528 QQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDD 587
+ + K Q+ A+ +G ++ + S+ D S+ E S + +
Sbjct: 548 LKKIMAEKSEAIRSQDFEKAGAL----RGEEVELKSEIMSLVDKSK---EMSKAAVDSGE 600
Query: 588 EPA-VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVK 646
P V D+ + S W+G+PV+++T DE L+ +E L +R++GQDEAV AISRA++
Sbjct: 601 SPGPTVTEADVQHIVSSWTGVPVEKVTVDESSRLLAMESSLHRRIVGQDEAVTAISRAIR 660
Query: 647 RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
R+RVGL+DP RP A+ +F GPTGVGK+ELAK+LAA Y+GS
Sbjct: 661 RARVGLRDPRRPIASFIFAGPTGVGKSELAKALAAYYYGS 700
>gi|402301968|ref|ZP_10821089.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
FOBRC9]
gi|400381253|gb|EJP34056.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
FOBRC9]
Length = 835
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 267/631 (42%), Positives = 365/631 (57%), Gaps = 94/631 (14%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSI 144
FT+ A+KAV FSQ A+ GK + T LLLG++ H + A EA+ +
Sbjct: 7 FTQTAIKAVEFSQYIAQRRGKGYIGTGQLLLGIL----HMRDTI--------AAEALTA- 53
Query: 145 WHSTNNQDTDDAAAQGKPFSSA----AKMPF-SISTKRVFEAAVEYSRSRGYNFIAPEHI 199
H + + G F ++P+ + +RV + A++ +R +F+ EHI
Sbjct: 54 -HGVDYDRVEQVLRTGDVFQDVRVANEEVPYYTRRAQRVMQGAIDTAREE-RSFVTTEHI 111
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
L L T +G+A RVL+ L VD+ L + R+ E + GK+
Sbjct: 112 LLSLLTEAEGTAVRVLEELDVDIEELQSQVFERMNSV---------------EETPKGKS 156
Query: 260 AALKSPGRTRAS----ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
A K PG+ S +L+++ DL A IDPVIGR+TEI R+IQIL RRTKNNP+
Sbjct: 157 AR-KKPGKGEKSVLPASLKKYARDLVGIARSGGIDPVIGRDTEIDRLIQILARRTKNNPL 215
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
LLGE+GVGKTA+AEGLA RI EVP L +KRI+SL M L+AG K RGE E R+ ++
Sbjct: 216 LLGEAGVGKTAVAEGLAQRIADGEVPFLLENKRIVSLSMTALVAGTKYRGEFEERLKNVV 275
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
++ KS ++ILFIDE+HTLI +G G +G+ LD +N+LKP+L R E+Q I +TTQ E+
Sbjct: 276 DDVIKSKNLILFIDEIHTLIRTG----GAEGS-LDAANILKPALARSEMQIIGATTQSEY 330
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
+ F KD ALARRFQ V + EPS+EDA RIL GLR+KYE H+ + A+ AAV L+ R
Sbjct: 331 KKHFAKDSALARRFQVVTVGEPSEEDAERILFGLRDKYEEFHHAQIEDTAVCAAVRLAKR 390
Query: 496 YISDRYLPDKAIDLVDEAGSRA---HI-----------ELFKRKKEQQTCILSKPPD--- 538
YI+DRYLPDKAIDL+DEA SR HI EL KE++ I ++ +
Sbjct: 391 YITDRYLPDKAIDLMDEAASRVRMQHIGMSDALSGLRAELVGLVKEKERAISAQNYEEAA 450
Query: 539 ---DYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPD 595
D QE+RT +L+ A GD ++ V D
Sbjct: 451 RLRDREQELRT-----------QLE----AARHGDEQRTLIH--------------VTED 481
Query: 596 DIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDP 655
DIA+V + W+GIPVQ+I A E L+ LE+ + +RVIGQDEA+ A+S+AV+R+R G+KDP
Sbjct: 482 DIASVVAQWTGIPVQRIAAKESDRLLILEKTIGRRVIGQDEAIHAVSKAVRRARAGVKDP 541
Query: 656 NRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686
RP + LF G TGVGKTELA++LA FG+
Sbjct: 542 RRPIGSFLFLGSTGVGKTELARALAESVFGT 572
>gi|23336357|ref|ZP_00121578.1| COG0542: ATPases with chaperone activity, ATP-binding subunit
[Bifidobacterium longum DJO10A]
gi|189438873|ref|YP_001953954.1| ATP-binding subunit of Clp protease [Bifidobacterium longum DJO10A]
gi|227546736|ref|ZP_03976785.1| ATP-dependent protease, ATPase subunit [Bifidobacterium longum
subsp. longum ATCC 55813]
gi|239620712|ref|ZP_04663743.1| ClpC [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|317481706|ref|ZP_07940738.1| ATPase [Bifidobacterium sp. 12_1_47BFAA]
gi|322689668|ref|YP_004209402.1| Clp protease [Bifidobacterium longum subsp. infantis 157F]
gi|322691629|ref|YP_004221199.1| Clp protease [Bifidobacterium longum subsp. longum JCM 1217]
gi|419847456|ref|ZP_14370628.1| Clp amino terminal domain protein [Bifidobacterium longum subsp.
longum 1-6B]
gi|419850517|ref|ZP_14373505.1| Clp amino terminal domain protein [Bifidobacterium longum subsp.
longum 35B]
gi|419852605|ref|ZP_14375472.1| Clp amino terminal domain protein [Bifidobacterium longum subsp.
longum 2-2B]
gi|419855456|ref|ZP_14378213.1| Clp amino terminal domain protein [Bifidobacterium longum subsp.
longum 44B]
gi|189427308|gb|ACD97456.1| ATP-binding subunit of Clp protease [Bifidobacterium longum DJO10A]
gi|227212698|gb|EEI80579.1| ATP-dependent protease, ATPase subunit [Bifidobacterium longum
subsp. infantis ATCC 55813]
gi|239516288|gb|EEQ56155.1| ClpC [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|291516227|emb|CBK69843.1| ATPases with chaperone activity, ATP-binding subunit
[Bifidobacterium longum subsp. longum F8]
gi|316916820|gb|EFV38210.1| ATPase [Bifidobacterium sp. 12_1_47BFAA]
gi|320456485|dbj|BAJ67107.1| Clp protease [Bifidobacterium longum subsp. longum JCM 1217]
gi|320461004|dbj|BAJ71624.1| Clp protease [Bifidobacterium longum subsp. infantis 157F]
gi|386408907|gb|EIJ23792.1| Clp amino terminal domain protein [Bifidobacterium longum subsp.
longum 35B]
gi|386410285|gb|EIJ25079.1| Clp amino terminal domain protein [Bifidobacterium longum subsp.
longum 2-2B]
gi|386411010|gb|EIJ25774.1| Clp amino terminal domain protein [Bifidobacterium longum subsp.
longum 1-6B]
gi|386415546|gb|EIJ30075.1| Clp amino terminal domain protein [Bifidobacterium longum subsp.
longum 44B]
Length = 869
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 246/615 (40%), Positives = 363/615 (59%), Gaps = 51/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+ +D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N AA G +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGN------AAPNGH-------IPFTPHAKQVLEFSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + + ++G G + ++
Sbjct: 108 ILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGN-------SGTGTGDGKGDLANA 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ ++ L+QF +LTA A+E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 161 GGVTDKQNKSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKIQAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ +A LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQA-MHEVVQ 555
DR LPDKAIDL+DEAG+R I KR L+ PP+ + ++I + A E ++
Sbjct: 396 DRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDEKIAKIAADKDEAIK 444
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWSGIPV 609
G + A + D E +E+ D D VV D IA V S +GIPV
Sbjct: 445 GQDFEK---AAELRDKQE-KLEADRKQKEDSWREGESDVKMVVDEDVIAEVISSTTGIPV 500
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTG
Sbjct: 501 FKLTQAESKKLLNMEAELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTG 560
Query: 670 VGKTELAKSLAACYF 684
VGKTELAK+LA F
Sbjct: 561 VGKTELAKTLAEFLF 575
>gi|23464638|ref|NP_695241.1| protease [Bifidobacterium longum NCC2705]
gi|23325195|gb|AAN23877.1| protease [Bifidobacterium longum NCC2705]
Length = 869
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 246/615 (40%), Positives = 363/615 (59%), Gaps = 51/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+ +D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N AA G +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGN------AAPNGH-------IPFTPHAKQVLEFSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + + ++G G + ++
Sbjct: 108 ILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGN-------SGTGTGDGKGDLANA 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ ++ L+QF +LTA A+E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 161 GGVTDKQNKSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKIQAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ +A LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQA-MHEVVQ 555
DR LPDKAIDL+DEAG+R I KR L+ PP+ + ++I + A E ++
Sbjct: 396 DRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDEKIAKIAADKDEAIK 444
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWSGIPV 609
G + A + D E +E+ D D VV D IA V S +GIPV
Sbjct: 445 GQDFEK---AAELRDKQE-KLEADRKQKEDSWREGESDVKMVVDEDVIAEVISSTTGIPV 500
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTG
Sbjct: 501 FKLTQAESKKLLNMEAELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTG 560
Query: 670 VGKTELAKSLAACYF 684
VGKTELAK+LA F
Sbjct: 561 VGKTELAKTLAEFLF 575
>gi|283455701|ref|YP_003360265.1| Negative regulator of genetic competence clpC/mecB [Bifidobacterium
dentium Bd1]
gi|283102335|gb|ADB09441.1| clpC Negative regulator of genetic competence clpC/mecB
[Bifidobacterium dentium Bd1]
Length = 863
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 238/612 (38%), Positives = 361/612 (58%), Gaps = 45/612 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+++D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVSLDDTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N S +PF+ ++V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGNA-------------SPNGHIPFTPHARQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ V++ L + + ++G ++G + ++
Sbjct: 108 ILLGLIHEGEGVGTQVLIKMDVNLGELRSATIDLIRGNSGG-------SQGEGKGDLANA 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ ++ L+QF +LTA A+ +DPVIGR +EI+R++ +L RRTKNNP+L+G
Sbjct: 161 GGVQDRRNQSGSAILDQFGRNLTAEAASGKLDPVIGRSSEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKINAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLRE+YE HH+ T A+ +A LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPTIAETIEILKGLRERYENHHHVTITDGALQSAAELSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
D +LPDKAIDL+DEAG+R I L+ PP+ + + + E Q +
Sbjct: 396 DSHLPDKAIDLIDEAGARLRIRR-----------LTAPPELKELDAKVAKLAEEKDQAIK 444
Query: 559 LKYDDVVASMGDTSEIV------VESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ + A + D E + ESS + D VV D IA V S +GIPV ++
Sbjct: 445 DQDFEKAAELRDRQEKLEAERKEKESSWREG-ESDVKMVVDEDVIAEVISQTTGIPVFKL 503
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTGVGK
Sbjct: 504 TQAESKKLMSMESELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPSGSFIFAGPTGVGK 563
Query: 673 TELAKSLAACYF 684
TELAK+LA F
Sbjct: 564 TELAKTLAEFLF 575
>gi|325295444|ref|YP_004281958.1| ATPase AAA [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065892|gb|ADY73899.1| ATPase AAA-2 domain protein [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 820
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 250/615 (40%), Positives = 361/615 (58%), Gaps = 63/615 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAR-- 138
+FERFT +A + +I S+ +A +L + + T+H+LL L+ +D N L S I KAR
Sbjct: 1 MFERFTAKARQIIIKSKEQAVALRCEKLGTEHILLALLRDDEIANQIL-SKYNISKARIQ 59
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFS---SAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
E ++S Q +P S + FS +RV E A+E S+ G+ ++
Sbjct: 60 EIIIS---------------QVQPVSYEVDVNTITFSTEARRVLEHALEESKILGHAYVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
PEH+ + L G AGR+L+ G+D L RE S N +
Sbjct: 105 PEHLFIALAKERLGLAGRILRSYGLDHYTLR---------------REVS-------NLL 142
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
G K+ R+ L++F DLT A E +DPVIGRE EI+R+ IL RR KNNP+
Sbjct: 143 KGIAREKKATKRSSTPNLDKFGRDLTKLAEEGKLDPVIGREKEIERVTHILARRRKNNPV 202
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAI EGLA++I + +VP L +KRI+SLDM L+AG K RG+ E R+ ++
Sbjct: 203 LIGEPGVGKTAIVEGLALKIAKGDVPEKLKNKRIVSLDMASLIAGTKYRGQFEERLKAIV 262
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
E++ + +VILFIDE+HTL+G+G +G+ +D SN+LKPSL RGE+Q I +TT DE+
Sbjct: 263 KELENNKNVILFIDEIHTLVGAGAA----EGS-MDASNILKPSLSRGEIQVIGATTIDEY 317
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV++ EP+ EDA+ IL GL+ K+E HN + T AI AV LS R
Sbjct: 318 RKYIEKDGALERRFQPVMVEEPTVEDAIEILKGLKPKFEEFHNVEITDGAIERAVKLSVR 377
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHE--- 552
YI+DR LPDKAID++DEAG++A ++ ++ ++ +EI V+++ E
Sbjct: 378 YINDRKLPDKAIDIIDEAGAKAQLQASRK---------DSKVEELEKEIEKVKSLKEEAL 428
Query: 553 -VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ + + Y + ++ L +E V+ + + +LW+GIPVQQ
Sbjct: 429 AMAEYEKAHYYKQQELVLLAELEEIKRKLKR-KQKEEKIVIDEAKVEEIVALWTGIPVQQ 487
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLK-DPNRPTAAMLFCGPTGV 670
+ E L+ LE +L KRV+GQ+EAV A+++A+KRSR+G++ RP + LF GPTGV
Sbjct: 488 LQEKEAEKLLRLEGELHKRVVGQEEAVKAVAKAIKRSRLGIRSSAQRPIGSFLFLGPTGV 547
Query: 671 GKTELAKSLAACYFG 685
GKTELAK+LA FG
Sbjct: 548 GKTELAKALAEALFG 562
>gi|404257466|ref|ZP_10960792.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
namibiensis NBRC 108229]
gi|403404139|dbj|GAB99201.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
namibiensis NBRC 108229]
Length = 827
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 247/590 (41%), Positives = 356/590 (60%), Gaps = 47/590 (7%)
Query: 103 LGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQG 160
L + + T+H+LLGLI E LES GI+++ R V I QG
Sbjct: 2 LNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVRSQVEEI------------IGQG 49
Query: 161 KPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGV 220
+ + + +PF+ K+V E ++ + G+N+I EHI LGL +G A +VL +LG
Sbjct: 50 QQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGA 108
Query: 221 DVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDL 280
D+N + + L G +G+EP +E G+++ +P + + L+QF +L
Sbjct: 109 DLNRVRQQVIQLLSG---YQGKEP------QEAGTGGRSSESGTP--STSLVLDQFGRNL 157
Query: 281 TARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340
TA A+E +DPVIGRE EI+R++Q+L RRTKNNP+L+GE GVGKTA+ EGLA IV +V
Sbjct: 158 TAAAAEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVNGQV 217
Query: 341 PVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTV 400
P L K++ +LD+G L+AG++ RG+ E R+ ++ EI GD+ILFIDE+HTL+G+G
Sbjct: 218 PETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAA 277
Query: 401 GRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQE 460
+G +D +++LKP L RGELQ I +TT DE+R EKD AL RRFQPV + EPS E
Sbjct: 278 ----EGA-IDAASILKPKLARGELQTIGATTLDEYRKYIEKDAALERRFQPVQVGEPSVE 332
Query: 461 DAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE 520
+ IL GLR++YE+HH T A+ AA L+ RYI+DR+LPDKAIDL+DEAG+R I
Sbjct: 333 HTIEILKGLRDRYESHHRVSITDGALVAAATLADRYINDRFLPDKAIDLIDEAGARMRIR 392
Query: 521 LFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSL 580
++ PPD + R A E + + AS+ D + +V
Sbjct: 393 R-----------MTAPPDLREFDERIADARKEKESAIDAQDFEKAASLRDKEKQLVAERA 441
Query: 581 P-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQD 635
+ D D A V + IA V W+GIPV ++T +E L+ +EE+L KR+IGQ+
Sbjct: 442 EREKQWRSGDMDVVAEVDDEQIAEVLGNWTGIPVFKLTEEETTRLLRMEEELHKRIIGQE 501
Query: 636 EAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685
+AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKTEL+K+LA FG
Sbjct: 502 DAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFG 551
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAREAVV 142
FT RA K + S REA LG + + T+H+LLGLI E ++ G +++ R+ V+
Sbjct: 59 FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVI 118
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSA 166
+ ++ +A G+ S
Sbjct: 119 QLLSGYQGKEPQEAGTGGRSSESG 142
>gi|320530200|ref|ZP_08031270.1| negative regulator of genetic competence ClpC/MecB [Selenomonas
artemidis F0399]
gi|320137633|gb|EFW29545.1| negative regulator of genetic competence ClpC/MecB [Selenomonas
artemidis F0399]
Length = 835
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 260/614 (42%), Positives = 365/614 (59%), Gaps = 60/614 (9%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSI 144
FT+ A+KAV FSQ A+ GK + T LLLG++ H + A EA+ +
Sbjct: 7 FTQTAIKAVEFSQYIAQRRGKGYIGTGQLLLGIL----HMRDTI--------AAEALTA- 53
Query: 145 WHSTNNQDTDDAAAQGKPFSSA----AKMPF-SISTKRVFEAAVEYSRSRGYNFIAPEHI 199
H + + G F ++P+ + +RV + A++ +R +F+ EHI
Sbjct: 54 -HGVDYDRVEQVLRTGDVFQDVRVANEEVPYYTRRAQRVMQGAIDTAREE-RSFVTTEHI 111
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
L L T +G+A RVL+ L VD+ L + R+ E + GK+
Sbjct: 112 LLSLLTEAEGTAVRVLEELDVDIEELQSQVFERMNSV---------------EETPKGKS 156
Query: 260 AALKSPGRTRAS----ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
A K PG+ S +L+++ DL A IDPVIGR+TEI R+IQIL RRTKNNP+
Sbjct: 157 AR-KKPGKGEKSVLPASLKKYARDLVGIARSGGIDPVIGRDTEIDRLIQILARRTKNNPL 215
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
LLGE+GVGKTA+AEGLA RI EVP L +KRI+SL M L+AG K RGE E R+ ++
Sbjct: 216 LLGEAGVGKTAVAEGLAQRIADGEVPFLLENKRIVSLSMTALVAGTKYRGEFEERLKNVV 275
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
++ KS ++ILFIDE+HTLI +G G +G+ LD +N+LKP+L R E+Q I +TTQ E+
Sbjct: 276 DDVIKSKNLILFIDEIHTLIRTG----GAEGS-LDAANILKPALARSEMQIIGATTQSEY 330
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
+ F KD ALARRFQ V + EPS+EDA RIL GLR+KYE H+ + A+ AAV L+ R
Sbjct: 331 KKHFAKDSALARRFQVVTVGEPSEEDAERILFGLRDKYEEFHHAQIEDSAVCAAVRLAKR 390
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YI+DRYLPDKAIDL+DEA SR ++ + + + ++ ++ R + A + +
Sbjct: 391 YITDRYLPDKAIDLMDEAASRVRMQHIG-MSDALSGLRAELAGLVKEKERAISAQN-YEE 448
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAV---VGPDDIAAVASLWSGIPVQQI 612
+RL+ E + + L +A DE V DDIA+V + W+GIPVQ+I
Sbjct: 449 AARLR----------DREQELRTQLEAARHGDEQRTLIHVTEDDIASVVAQWTGIPVQRI 498
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
A E L+ LE+ + +RVIGQDEA+ A+S+AV+R+R G+KDP RP + LF G TGVGK
Sbjct: 499 AAKESDRLLILEKTIGRRVIGQDEAIHAVSKAVRRARAGVKDPRRPIGSFLFLGSTGVGK 558
Query: 673 TELAKSLAACYFGS 686
TELA++LA FG+
Sbjct: 559 TELARALAESVFGT 572
>gi|312132327|ref|YP_003999666.1| clpa1 [Bifidobacterium longum subsp. longum BBMN68]
gi|311773667|gb|ADQ03155.1| ClpA1 [Bifidobacterium longum subsp. longum BBMN68]
Length = 869
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 246/615 (40%), Positives = 363/615 (59%), Gaps = 51/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+ +D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N AA G +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGN------AAPNGH-------IPFTPHAKQVLEFSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + + ++G G + ++
Sbjct: 108 ILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGN-------SGTGTGDGKGDLANA 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ ++ L+QF +LTA A+E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 161 GGVTDKQNKSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKIQAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ +A LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQA-MHEVVQ 555
DR LPDKAIDL+DEAG+R I KR L+ PP+ + ++I + A E ++
Sbjct: 396 DRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDEKIAKIAADKDEAIK 444
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWSGIPV 609
G + A + D E +E+ D D VV D IA V S +GIPV
Sbjct: 445 GQDFEK---AAELRDKQE-KLEADRKQKEDSWREGESDVKMVVDEDVIAEVISSTTGIPV 500
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTG
Sbjct: 501 FKLTQAESKKLLNMEAELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTG 560
Query: 670 VGKTELAKSLAACYF 684
VGKTELAK+LA F
Sbjct: 561 VGKTELAKTLAEFLF 575
>gi|225352751|ref|ZP_03743774.1| hypothetical protein BIFPSEUDO_04381 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225156358|gb|EEG69927.1| hypothetical protein BIFPSEUDO_04381 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 861
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 243/611 (39%), Positives = 361/611 (59%), Gaps = 43/611 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+T+D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGDGVAAKALASKGVTLDDTR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N A G +PF+ ++V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGN------ATPNGH-------IPFTPHARQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ V++ L + + ++G KG + ++
Sbjct: 108 ILLGLIHEGEGVGTQVLIKMDVNLGELRSATIDLIRGN-------SGDGKGDGKGDLANA 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+T ++ L+QF +LTA A+ +DPVIGR +EI+R++ +L RRTKNNP+L+G
Sbjct: 161 GGVQDRRNQTGSAILDQFGRNLTAEAAAGKLDPVIGRSSEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKINAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EPS + + IL GLR +YE HH+ T A+ AA LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPSIAETIEILKGLRSRYENHHHVTITDGALQAAADLSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I L+ PP+ + + + E Q +
Sbjct: 396 DRHLPDKAIDLIDEAGARLRIRR-----------LTAPPELKELDTKIAKLAEEKDQAIK 444
Query: 559 LKYDDVVASMGDTSE-IVVESSLPSAS----DDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A + D E + E +S + D VV D IA V S +GIPV ++T
Sbjct: 445 GQDFEKAAELRDKQEKLEAERKQKESSWREGESDVKMVVDEDVIAEVISQTTGIPVFKLT 504
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTGVGKT
Sbjct: 505 QAESKKLMTMESELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPSGSFIFAGPTGVGKT 564
Query: 674 ELAKSLAACYF 684
ELAK+LA F
Sbjct: 565 ELAKTLAEFLF 575
>gi|260681795|ref|YP_003213080.1| ATP-dependent Clp protease [Clostridium difficile CD196]
gi|260685392|ref|YP_003216525.1| ATP-dependent Clp protease [Clostridium difficile R20291]
gi|260207958|emb|CBA60088.1| ATP-dependent Clp protease [Clostridium difficile CD196]
gi|260211408|emb|CBE01489.1| ATP-dependent Clp protease [Clostridium difficile R20291]
Length = 749
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 240/537 (44%), Positives = 333/537 (62%), Gaps = 45/537 (8%)
Query: 159 QGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRL 218
+GK + + S +K++ E + ++ N+I EHI L + +G A ++L
Sbjct: 2 EGKGEEISEDIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYA 61
Query: 219 GVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCV 278
GV+ LA + + + ++ + + + ENS +G + + + L+++
Sbjct: 62 GVNDRTLAQLTIDMMG--ISDKNQYKA------ENSYTG------NQNQAESKVLDKYGR 107
Query: 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338
+LT A + IDPVIGRE EIQR+IQIL RRTKNNP+L+G+ GVGKTAIAEGLA I
Sbjct: 108 NLTLYAKQNKIDPVIGREKEIQRVIQILSRRTKNNPVLIGDPGVGKTAIAEGLATNIALG 167
Query: 339 EVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSG 398
VP L +K + SL+MG L+AGAK RGE E R+ ++ E+ K+G++ILFIDE+HT+IG+G
Sbjct: 168 NVPETLKNKTLYSLEMGSLLAGAKYRGEFEERIKEVVDEVVKNGNIILFIDEMHTIIGAG 227
Query: 399 TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPS 458
+ G G+ +D SN+LKP+L RGE+Q I +TT DE+R EKD AL RRFQPV++ EP+
Sbjct: 228 STGEGS----IDASNILKPALARGEIQVIGATTIDEYRKHVEKDSALERRFQPVMVDEPT 283
Query: 459 QEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518
+ED+++IL GLR+KYEAHH K T +AI AAV LS RYISDRYLPDKAIDL+DEA S+
Sbjct: 284 KEDSIKILEGLRDKYEAHHKVKITDDAIKAAVELSTRYISDRYLPDKAIDLIDEAASKV- 342
Query: 519 IELFKRKKEQQTCILSKPPDDYWQ---EIRTVQAMHEVVQGSRLKYDDVVASMGDTS--- 572
R KE + PP + + EI + E + R + + A + D
Sbjct: 343 -----RLKE------NTPPSEIKKLELEIENIDKEKE--EAVRCQDFEKAAKIRDEQGLL 389
Query: 573 ----EIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLK 628
E V E S+ D +V + IA V LW+GIPV +I +E L+ LEE L
Sbjct: 390 KKQLEDVRERWNKSSKHSD---LVDGEVIAEVVGLWTGIPVNKILEEEADRLLRLEEILH 446
Query: 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685
RVIGQ++AV +IS+A++RSR GLKDPNRP + LF GPTGVGKTEL+K+LA FG
Sbjct: 447 NRVIGQEQAVKSISKAIRRSRAGLKDPNRPIGSFLFLGPTGVGKTELSKALAEVQFG 503
>gi|401679773|ref|ZP_10811697.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
ACP1]
gi|400218900|gb|EJO49771.1| negative regulator of genetic competence ClpC/MecB [Veillonella sp.
ACP1]
Length = 816
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 258/607 (42%), Positives = 363/607 (59%), Gaps = 46/607 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+ +RFT+ A + + F+Q A LG D V T+H+L+GLI +++G+ E
Sbjct: 1 MMQRFTDDAQRVISFAQEAALELGHDYVGTEHVLIGLIK--------VKNGVAAKALNE- 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + T +D ++ +G +S+ M + K V E AVE + +N++ EHI
Sbjct: 52 -LGLSAETIIEDVEEHIGRGNKKASSVYMTPRV--KHVLELAVEVANHMNHNYVGTEHIL 108
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL + G A +L+ + N + V ++ L A+ ++NS G+ A
Sbjct: 109 LGLLSDGGGVAVGILRNHNIRANDI----VDTIRTILGSSDSASHSAEDRKDNSSLGELA 164
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
F DL A + IDPVIGR+ EI R+IQIL RRTKNNP+L+GE
Sbjct: 165 --------------DFGTDLNESAKQGKIDPVIGRDKEIARVIQILSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RIV VP L +KRI+SL + ++AGAK RGE E R+ I E+QK
Sbjct: 211 GVGKTAIAEGLAQRIVNGNVPEILRNKRIISLSISSMLAGAKYRGEFEERLKKAIDEVQK 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
D+I+FIDE+HTL+G+G +G +D +N+LKP+L RGE Q I +TT DE++ E
Sbjct: 271 HDDMIIFIDEIHTLVGAG----ATEG-AMDAANILKPALARGEFQVIGATTLDEYKKHIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPVL+ EPS+EDA+ IL GLR++YEA H K T EA+ AAV LS+RYI+DR
Sbjct: 326 KDAALERRFQPVLVGEPSEEDALEILKGLRDRYEAFHKAKITDEALEAAVSLSSRYITDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAID+VDEA S+ +++F + + L D +E E + + ++
Sbjct: 386 FLPDKAIDVVDEAASKVRMKVFSAAPDVKA--LETQLADVKKEKEAAVTAQEFEKAAEMR 443
Query: 561 YDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERM 618
++ + + D + E+S D VV +DIA+V + W+GIPV +I +E
Sbjct: 444 DEEKRIEKEINDKKKAAKENS-------DAKLVVTDEDIASVVAQWTGIPVSKIAQEESE 496
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
L+ LEE+L KRVIGQDEAV A+S++V+R+R GLKDP RP + LF GPTGVGKTELA++
Sbjct: 497 SLLHLEEELHKRVIGQDEAVVAVSKSVRRARAGLKDPKRPIGSFLFLGPTGVGKTELARA 556
Query: 679 LAACYFG 685
LA FG
Sbjct: 557 LAVALFG 563
>gi|339633595|ref|YP_004725237.1| ATP-dependent protease ATP-binding subunit CLPC1 [Mycobacterium
africanum GM041182]
gi|339332951|emb|CCC28678.1| putative ATP-dependent protease ATP-binding subunit CLPC1
[Mycobacterium africanum GM041182]
Length = 848
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/613 (41%), Positives = 359/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGR EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGRGKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + +A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIAEARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKTLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|294101565|ref|YP_003553423.1| ATPase AAA-2 domain-containing protein [Aminobacterium colombiense
DSM 12261]
gi|293616545|gb|ADE56699.1| ATPase AAA-2 domain protein [Aminobacterium colombiense DSM 12261]
Length = 830
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/614 (41%), Positives = 372/614 (60%), Gaps = 49/614 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+++ FTER K V + REA +G D++ T+H+LLGL+ E L S G+ + R
Sbjct: 1 MWQFFTERGKKVVQLAHREALRMGHDVIGTEHILLGLLVEGEGVAAQVLNSLGVNFQEVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ T++ +G+P +P S KRV + A++ +R+ G N++ EH
Sbjct: 61 ------------RQTEELVGKGQPILKPIDLPLSPRAKRVLDLAIKEARNMGVNYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSR-LQGELAKEGREPSLAKGVRENSISG 257
+ LGL +G A ++L GVD + +SR + A G +P L+ G + S+
Sbjct: 109 VLLGLLAEGEGVAAQILLSSGVD-TVIVQREISRFIANNEADRGVQPDLS-GEGQRSLHS 166
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
KT L+Q +DL+ ++ ++ +DPVIGR+ EIQR+IQIL RRTKNNP+LL
Sbjct: 167 KT-----------PTLDQLGIDLSEKSRKDELDPVIGRDKEIQRVIQILARRTKNNPVLL 215
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
G+ GVGKTAI EGLA +I + L K+I+ L++G L+AG K RGE E R+ L+ E
Sbjct: 216 GDPGVGKTAIVEGLAQKIQDGNIAEILRGKKIVQLNIGNLVAGTKYRGEFEERMRKLLKE 275
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++++GDVI+FIDE+H++IG+G G +G +D +N+LKPSL RGE Q I +TT DE+R
Sbjct: 276 LRETGDVIIFIDEIHSIIGAG----GAEGA-VDAANILKPSLSRGEFQVIGATTLDEYRK 330
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV++ EPS +D + IL GLR++YE+HH K + +A+ AA LS+RYI
Sbjct: 331 YIEKDAALERRFQPVMVEEPSVDDTISILEGLRDRYESHHRVKISDDALVAAARLSSRYI 390
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557
++R+LPDKAIDL+DEA +RA + +T + D ++ V+ E S
Sbjct: 391 TERFLPDKAIDLIDEAAARARL---------KTMEIPANLKDIEHDLEEVRKEKEAAVTS 441
Query: 558 RLKYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQI 612
+ +++ A + DT + E D E +V DDIA + S W+ IPV Q+
Sbjct: 442 Q-EFEK-AARLRDTERKISEELEEKKKDWQSRRYQEKPLVSFDDIATIVSEWTNIPVTQL 499
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
T +E L+ +EE++ R+IGQ+EAV+A++RA++R+R G+KDP RP + LF GPTGVGK
Sbjct: 500 TEEETQRLLRMEEEIHCRLIGQEEAVSAVARAIRRARSGMKDPRRPVGSFLFLGPTGVGK 559
Query: 673 TELAKSLAACYFGS 686
TELA+ LA FGS
Sbjct: 560 TELARRLADFLFGS 573
>gi|427390984|ref|ZP_18885390.1| hypothetical protein HMPREF9233_00893 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732322|gb|EKU95132.1| hypothetical protein HMPREF9233_00893 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 866
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 254/623 (40%), Positives = 362/623 (58%), Gaps = 72/623 (11%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+FERFT+RA + ++ +Q EA++L + + T+H+LLGLI R G LE+ GIT+D
Sbjct: 1 MFERFTDRARRVIVLAQEEARNLKHNYLGTEHVLLGLI---REGEGVAAKALEALGITLD 57
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
+ R V+ I Q + +PF+ K+V E A+ G+++I
Sbjct: 58 EVRAEVIEIIGEGQEQ-------------PSGHIPFTPRAKKVIEYAMREGLQLGHSYIG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL DG A +VL++LG D+ + + G KE + + +
Sbjct: 105 TEHLLLGLTREPDGVAAQVLQKLGADMPTVRNQVNQLISGFQGKEAVGVGGGRREGQKAG 164
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S + L+Q+ +LT A + +DPVIGR TE +R++Q+L RRTKNNP+
Sbjct: 165 S--------------TILDQYGRNLTQAARDHKLDPVIGRHTETERVMQVLSRRTKNNPV 210
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGL+ I VP L K++ SLDMG L+AG++ RG+ E R+ ++
Sbjct: 211 LIGEPGVGKTAVVEGLSQMIAADNVPETLKGKQLYSLDMGSLVAGSRYRGDFEERMKKIL 270
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI GD+ILFIDE+HTL+G+G LD ++LLKP L RGE+Q I +TT DE+
Sbjct: 271 KEINTRGDIILFIDEIHTLVGAGAA-----EGALDAASLLKPMLARGEIQVIGATTLDEY 325
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + +P+ E + IL GLR++YE++H T +A+ AA LS R
Sbjct: 326 RKYIEKDAALERRFQPIQVDQPTAEQTIEILKGLRDRYESYHRVTITDDALEAAATLSER 385
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEI-RTVQAMHE 552
YI+DR+LPDKAIDL+DEAG+R I RK ++ PP+ + ++I T +A
Sbjct: 386 YINDRFLPDKAIDLIDEAGARLAI----RK-------MTAPPELRELDEKISSTRRAKEA 434
Query: 553 VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPA----------VVGPDDIAAVAS 602
+ G + A + D E SL + D+ E A VV D I V S
Sbjct: 435 AIDGQDFER---AAKLRDE-----EQSLNAERDEKEKAWKDGDMDVVSVVDEDLITEVLS 486
Query: 603 LWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAM 662
+ +GIPV +++ E L+ +E++L KRVIGQ EAV AIS+A++R R GLKDPNRP +
Sbjct: 487 MSTGIPVFKLSEAESEKLLRMEDELHKRVIGQHEAVTAISQAIRRQRAGLKDPNRPGGSF 546
Query: 663 LFCGPTGVGKTELAKSLAACYFG 685
+F GPTGVGKTELAK+LA FG
Sbjct: 547 IFAGPTGVGKTELAKALAEFLFG 569
>gi|189218258|ref|YP_001938900.1| ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones
[Methylacidiphilum infernorum V4]
gi|189185116|gb|ACD82301.1| ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones
[Methylacidiphilum infernorum V4]
Length = 836
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 248/632 (39%), Positives = 371/632 (58%), Gaps = 56/632 (8%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVS- 143
FT RA + + +++EA+ G + V T+HLLLGLI L G+ I+ ++ V
Sbjct: 4 FTPRAQQVLALARQEAERFGHNHVGTEHLLLGLIK--------LAQGVAINVLQKLGVDL 55
Query: 144 -IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
I + ++GKP A +P++ K+V A + +++ ++++ EHI LG
Sbjct: 56 EIIRVEIEKKIASVPSEGKP---TAPIPYTPRVKKVLALAGKEAKALNHSYVGTEHILLG 112
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
L +G A +LK L +D+ R++ E+ KE +P+ + E S A
Sbjct: 113 LLREGEGVAATILKNLDIDL--------ERVRNEILKE-LDPNFSSSGEEESPEPAFAGT 163
Query: 263 KSPGRTRAS---ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
+ AL+ F DLT A +DPVIGR+ EI+R++QILCRRTKNNP+L+GE
Sbjct: 164 TETTTKKEVKTPALKAFGRDLTELARRGELDPVIGRKNEIERVMQILCRRTKNNPVLIGE 223
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
+GVGKTAI EGLA I VP L K+I++LD+ L++AG K RG+ E R+ ++ EI+
Sbjct: 224 AGVGKTAIVEGLAQEIANENVPDLLRDKKIITLDLALMVAGTKYRGQFEERIKAVMEEIR 283
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
K+ ++ILFIDE+HT++G+G+ +D SN++KP+L RGELQCI +TT E+R
Sbjct: 284 KAKNIILFIDELHTIVGAGSA-----EGAMDASNIIKPALSRGELQCIGATTLSEYRKYI 338
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQ VL+ PS E+ ++IL GL+ KYE HH KFT +AI+ AV LS RY++
Sbjct: 339 EKDAALERRFQTVLVEAPSVEETIQILHGLKAKYEMHHKAKFTDQAIDTAVRLSDRYLTG 398
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMH-EVVQG 556
R+LPDKAID++DEAG+RA I +PP+ D E+ +++A E ++
Sbjct: 399 RFLPDKAIDIMDEAGARARI-----------AATMRPPELKDLENELASIRAKKDECIKA 447
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQQ 611
+ A++ D + E +D D++ + DD+ + S W+GIP+ +
Sbjct: 448 QNF---EKAAALRDKERELKEKLEQKIADWKKRRDEKETTITEDDMMQIVSKWTGIPITR 504
Query: 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVG 671
IT +++ + + +L+KRVIGQDEA+ A+SRA++RSR LKDP RP + +F GPTGVG
Sbjct: 505 ITENDQSKFLNVGAELRKRVIGQDEAIEALSRALQRSRADLKDPKRPIGSFIFLGPTGVG 564
Query: 672 KTELAKSLAACYFGS----VRIHYLFFPSPFN 699
KT LAK+LA FGS ++I + FN
Sbjct: 565 KTMLAKTLAEYVFGSAEALIQIDMSEYMEKFN 596
>gi|415728266|ref|ZP_11471839.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 6119V5]
gi|388065404|gb|EIK87895.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 6119V5]
Length = 882
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/618 (40%), Positives = 376/618 (60%), Gaps = 57/618 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+SL + + T+H+LLGLI E D + L S G+ ++ AR
Sbjct: 1 MFERFTDRARRVIVLAQEEARSLQHNYIGTEHILLGLIREGDGIASKALSSKGVDLEGAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ +G + + +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQV------------EEMIGKG-AVAPSGHIPFTPHAKQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + V ++G + + KG N+ S +
Sbjct: 108 ILLGLIREGEGIGTQVLIKMEVDLGDLRSTTVDLIRGGSSTSSEDE---KGELANAGSVQ 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ KS ++ L+QF +LT A E +DPVIGR EI+R++ IL RRTKNNP+L+G
Sbjct: 165 DKSNKSG----SALLDQFGRNLTLEAREGKLDPVIGRSEEIERVMVILSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTA+ EGLA +IV+ +VP L +K+I SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 DPGVGKTAVVEGLAQKIVEGDVPETLKNKQIYSLDLGSMIAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GDV+LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDVVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ ++ LS RYI
Sbjct: 336 IEKDAALERRFQPIQVPEPTIAETIEILKGLRSRYENHHHVTITDGALQSSAELSDRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I KR L++PP+ +E+ A +
Sbjct: 396 DRHLPDKAIDLIDEAGARLRI---KR--------LTQPPE--LKELNHKIAKISEKKDEA 442
Query: 559 LKYDDV--VASMGDTSEIVVESSLPSASDDDEPA----------VVGPDDIAAVASLWSG 606
+K D A++ D E L + + + E A VV D IA+V S +G
Sbjct: 443 IKQQDFEEAANLRDDQE-----KLENEAAEKEKAWREGESNVKMVVDEDMIASVVSSTTG 497
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E +L KR++GQDEAV+A++R+++R+RVGLKDP RP+ + +F G
Sbjct: 498 IPVVKLTQAESQKLLQMESELHKRIVGQDEAVSALARSIRRARVGLKDPKRPSGSFIFAG 557
Query: 667 PTGVGKTELAKSLAACYF 684
PTGVGKTELAK+LA F
Sbjct: 558 PTGVGKTELAKALANFLF 575
>gi|315605228|ref|ZP_07880274.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Actinomyces
sp. oral taxon 180 str. F0310]
gi|315313045|gb|EFU61116.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Actinomyces
sp. oral taxon 180 str. F0310]
Length = 826
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 264/621 (42%), Positives = 367/621 (59%), Gaps = 58/621 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKA 137
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI+E I +
Sbjct: 4 GMFERFTDRARRVVVLAQDEARGLKHNYIGTEHLLLGLISEGEGVAAKALETMEIKGEAV 63
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R +V+ I KP +PF+ KRVFE ++ + G+N+I E
Sbjct: 64 RASVIEIIGEGE-----------KPVE--GHIPFTPRAKRVFELSLREALQLGHNYIGTE 110
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG--ELAKEGREPSLAKGVRENSI 255
H+ LGL +G A +VL + G D+ + + L G +EGRE S+
Sbjct: 111 HLLLGLLKEGEGVAAQVLTKQGADLAQVRQTVIQMLSGYQRGDEEGRE----------SV 160
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
P R+ ++ LEQF +LT A E +DPVIGR TE++R++Q+L RRTKNNP+
Sbjct: 161 GAGVGGTGGPERSNSAILEQFGRNLTQAARENKLDPVIGRRTEMERVMQVLSRRTKNNPV 220
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA IV +VP + ++I SLDMG L+AG++ RG+ E R+ ++
Sbjct: 221 LIGEPGVGKTAVVEGLAQAIVAGDVPETIKDRQIYSLDMGSLVAGSRYRGDFEERLKKVL 280
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ GD+ILFIDE+HTL+G+G +G+ +D + +LKP L RGELQ I +TT DE+
Sbjct: 281 KEIRTRGDIILFIDEIHTLVGAGAA----EGS-IDAAQMLKPMLARGELQTIGATTNDEY 335
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS ++ V IL GLR++YEAHH T AI AA L+ R
Sbjct: 336 RKYIEKDAALERRFQPVKVDEPSVDETVEILKGLRDRYEAHHRVIITDAAIQAAAELADR 395
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVV 554
YISDR+LPDKAIDLVDEAG+R I ++ PP E+R + + + EV
Sbjct: 396 YISDRFLPDKAIDLVDEAGARLRIRR-----------MTAPP-----ELRELDEKIAEVR 439
Query: 555 QGSRLKYDD----VVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWS 605
+ DD AS+ D + E + DE A VG +IA V ++ +
Sbjct: 440 RNKEAAIDDQDFEKAASLRDEESKLAEERKSKEEAWKGGESDEIAEVGDQEIAEVLAMST 499
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV ++T E L+ +E++L KRVIGQDEAV A++++++R+R GLKDPNRP + +F
Sbjct: 500 GIPVVRLTQTETAKLLKMEDELHKRVIGQDEAVKALAQSIRRTRSGLKDPNRPGGSFIFA 559
Query: 666 GPTGVGKTELAKSLAACYFGS 686
GPTGVGKTELAK+LA FG
Sbjct: 560 GPTGVGKTELAKALAEFLFGD 580
>gi|404443896|ref|ZP_11009061.1| ATPase [Mycobacterium vaccae ATCC 25954]
gi|403654831|gb|EJZ09729.1| ATPase [Mycobacterium vaccae ATCC 25954]
Length = 847
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 253/613 (41%), Positives = 363/613 (59%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKE---------TAEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGEAGNP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGDVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T AI AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGAIAAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKTLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|296454596|ref|YP_003661739.1| ATPase domain-containing protein [Bifidobacterium longum subsp.
longum JDM301]
gi|296184027|gb|ADH00909.1| ATPase AAA-2 domain protein [Bifidobacterium longum subsp. longum
JDM301]
Length = 881
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 245/615 (39%), Positives = 362/615 (58%), Gaps = 51/615 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + ++ +Q EA++L + + T+HLLLGLI E G+ +D R
Sbjct: 1 MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V + N AA G +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQVEEMIGKGN------AAPNGH-------IPFTPHAKQVLEFSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + + ++G G + ++
Sbjct: 108 ILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGN-------SGTGTGDGKGDLANA 160
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
++ ++ L+QF +LT A+E +DPVIGR EI+R++ +L RRTKNNP+L+G
Sbjct: 161 GGVTDKQNKSGSAILDQFGRNLTVEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA +I +VP L K++ SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 EPGVGKTAVVEGLAQKIQAGDVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDIVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ +A LS+RYI
Sbjct: 336 IEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQA-MHEVVQ 555
DR LPDKAIDL+DEAG+R I KR L+ PP+ + ++I + A E ++
Sbjct: 396 DRNLPDKAIDLIDEAGARLRI---KR--------LTAPPELKELDEKIAKIAADKDEAIK 444
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASD------DDEPAVVGPDDIAAVASLWSGIPV 609
G + A + D E +E+ D D VV D IA V S +GIPV
Sbjct: 445 GQDFEK---AAELRDKQE-KLEADRKQKEDSWREGESDVKMVVDEDVIAEVISSTTGIPV 500
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
++T E L+ +E +L KR+IGQDEAV+A+SR+++R+RVGLKDP RP+ + +F GPTG
Sbjct: 501 FKLTQAESKKLLNMEAELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTG 560
Query: 670 VGKTELAKSLAACYF 684
VGKTELAK+LA F
Sbjct: 561 VGKTELAKTLAEFLF 575
>gi|108801719|ref|YP_641916.1| ATPase [Mycobacterium sp. MCS]
gi|119870870|ref|YP_940822.1| ATPase [Mycobacterium sp. KMS]
gi|108772138|gb|ABG10860.1| ATPase AAA-2 [Mycobacterium sp. MCS]
gi|119696959|gb|ABL94032.1| ATPase AAA-2 domain protein [Mycobacterium sp. KMS]
Length = 847
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/613 (40%), Positives = 361/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKESAEAGTGG---------R 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGESGNP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGDVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ + IL GLR++YEAHH T AI AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVAHTIEILKGLRDRYEAHHRVSITDGAIAAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKTLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|225874326|ref|YP_002755785.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Acidobacterium capsulatum ATCC 51196]
gi|225792167|gb|ACO32257.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Acidobacterium capsulatum ATCC 51196]
Length = 818
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 242/622 (38%), Positives = 370/622 (59%), Gaps = 55/622 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLESGITIDKARE 139
+FER+TE+A + + F++ EA G + T+HLLLGL+ ED+ N FL S +++ R+
Sbjct: 1 MFERYTEKARRVIFFARYEASQFGSPYIETEHLLLGLLREDKALTNRFLRSHASVESIRK 60
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+ H+T + S++ +P S KRV A E + + I EH+
Sbjct: 61 QIEG--HTTIREKV----------STSVDLPLSNECKRVLAYAAEEAERLSHKHIGTEHL 108
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL + A +L+ G L VA+ + ELA+ +E
Sbjct: 109 LLGLLREEKCFAAEILQERG-----LKLVAI---REELARATQE---------------- 144
Query: 260 AALKSPGRTR---ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
K+P R +S L +F DLT A++ +DP+IGR+ E++R++QILCRRTKNNP+L
Sbjct: 145 ---KAPPAQRNRESSLLAEFSRDLTQAAADNTLDPLIGRDQELERVVQILCRRTKNNPVL 201
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAI EGLA RI +VP FL KR+++LD+ L++AG K RG+ E R+ T++
Sbjct: 202 IGEPGVGKTAIVEGLAQRIADGDVPSFLADKRVLALDLSLIVAGTKYRGQFEERLKTIMK 261
Query: 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
E+ ++ + I+FIDE+HTL+G+G+ +G+ LD +N+LKP+L RGE+QCI +TT E+R
Sbjct: 262 ELMENQNSIIFIDELHTLVGAGSA----EGS-LDAANILKPALSRGEIQCIGATTPGEYR 316
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD++L RRFQ V + P++EDA++I++G++++YE H +T ++I AV S RY
Sbjct: 317 KSIEKDRSLERRFQAVKVPPPNEEDAIKIIMGIKDRYEKFHAVSYTDDSIEFAVSHSNRY 376
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQG 556
I DR+LPDKAIDL+DEAG+R ++L + ++ + K + A HE +
Sbjct: 377 IPDRFLPDKAIDLIDEAGAR--VKLRQTSLPEEITEVQKRIKFIVHRMENAIANHE-FEK 433
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
+R D+ + + + L DD +V +DI V S W+G+P+ I +E
Sbjct: 434 ARFYSDEERKERENLRALREKYHL----DDSTAGIVSREDIEDVVSRWTGVPITSIKEEE 489
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ +E +L KRVI Q++A++A++RA++RSR GLK P+RP + LF GPTGVGKTE+A
Sbjct: 490 TQKLLRVEGELHKRVISQEKAISALARAIRRSRAGLKSPHRPIGSFLFLGPTGVGKTEVA 549
Query: 677 KSLAACYFGSVRIHYLFFPSPF 698
++LA FGS + F S F
Sbjct: 550 RTLAQFLFGSEKSIIRFDMSEF 571
>gi|415717998|ref|ZP_11467110.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 1500E]
gi|388060353|gb|EIK83047.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 1500E]
Length = 879
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/618 (40%), Positives = 376/618 (60%), Gaps = 57/618 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAR 138
+FERFT+RA + ++ +Q EA+SL + + T+H+LLGLI E D + L S G+ ++ AR
Sbjct: 1 MFERFTDRARRVIVLAQEEARSLQHNYIGTEHILLGLIREGDGIASKALSSKGVDLEGAR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V ++ +G + + +PF+ K+V E ++ + G+++I EH
Sbjct: 61 KQV------------EEMIGKG-AVAPSGHIPFTPHAKQVLELSLREALQLGHSYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G +VL ++ VD+ L + V ++G + + KG N+ S +
Sbjct: 108 ILLGLIREGEGIGTQVLIKMEVDLGDLRSTTVDLIRGGSSTSSEDE---KGELANAGSVQ 164
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ KS ++ L+QF +LT A E +DPVIGR EI+R++ IL RRTKNNP+L+G
Sbjct: 165 DKSNKSG----SALLDQFGRNLTLEAREGKLDPVIGRSEEIERVMVILSRRTKNNPVLIG 220
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
+ GVGKTA+ EGLA +IV+ +VP L +K+I SLD+G ++AG++ RG+ E R+ ++ EI
Sbjct: 221 DPGVGKTAVVEGLAQKIVEGDVPETLKNKQIYSLDLGSMIAGSRYRGDFEERLKKVLKEI 280
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GDV+LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R
Sbjct: 281 KTRGDVVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKY 335
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ ++ LS RYI
Sbjct: 336 IEKDAALERRFQPIQVPEPTIAETIEILKGLRSRYENHHHVTITDGALQSSAELSDRYIQ 395
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I KR L++PP+ +E+ A +
Sbjct: 396 DRHLPDKAIDLIDEAGARLRI---KR--------LTQPPE--LKELNHKIAKISEKKDEA 442
Query: 559 LKYDDV--VASMGDTSEIVVESSLPSASDDDEPA----------VVGPDDIAAVASLWSG 606
+K D A++ D E L + + + E A VV D IA+V S +G
Sbjct: 443 IKQQDFEEAANLRDDQE-----KLENEAAEKEKAWREGESNVKMVVDEDMIASVVSSTTG 497
Query: 607 IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCG 666
IPV ++T E L+ +E +L KR++GQDEAV+A++R+++R+RVGLKDP RP+ + +F G
Sbjct: 498 IPVVKLTQAESQKLLQMESELHKRIVGQDEAVSALARSIRRARVGLKDPKRPSGSFIFAG 557
Query: 667 PTGVGKTELAKSLAACYF 684
PTGVGKTELAK+LA F
Sbjct: 558 PTGVGKTELAKALANFLF 575
>gi|401564502|ref|ZP_10805392.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
FOBRC6]
gi|400188786|gb|EJO22925.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
FOBRC6]
Length = 834
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 263/607 (43%), Positives = 356/607 (58%), Gaps = 47/607 (7%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLI-AEDRHPNGFLES-GITIDKAREAVV 142
FT+ A+KAV FSQ A+ GK + T LLLG++ D L+ G D A +
Sbjct: 7 FTQAAIKAVEFSQYIAQRRGKGYIGTGQLLLGIMHMRDTIAAEVLDKFGADYDSAEQV-- 64
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPF-SISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
I +S QD A +P+ + +RV + A++ +R +F+ EHI L
Sbjct: 65 -IRNSDGFQDV---------LHPAEDVPYYTRRAQRVMQGAIDTAREE-RSFVTTEHILL 113
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
L T +G+A L+ L VD+ L + + R+ A+E +E S + + G A+
Sbjct: 114 SLLTEAEGTAVHTLEELDVDIEELQSEVLERMSE--AEESKEKSSRRKPNKGGAKGLPAS 171
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
LK GR DL A IDPVIGR EI R+IQIL RRTKNNPILLGE+G
Sbjct: 172 LKKFGR-----------DLIGVARTGGIDPVIGRAAEIDRVIQILARRTKNNPILLGEAG 220
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA RI EVP L KR+++L M L+AG K RGE E R+ ++ ++ K+
Sbjct: 221 VGKTAIAEGLAQRIADGEVPFLLEDKRVVTLSMTALVAGTKYRGEFEERLKNVVDDVIKA 280
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
++ILFIDE+HTLI +G G +G+ LD +N+LKP+L RGE+Q I +TT E++ F K
Sbjct: 281 KNIILFIDEIHTLIRAG----GAEGS-LDAANILKPALARGEMQIIGATTLSEYKKHFAK 335
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D ALARRFQ V++ EP +EDA +IL GLR KYE H + +A+ AAV LS RYI+DR+
Sbjct: 336 DSALARRFQTVMVEEPGEEDAEQILFGLRSKYEEFHRARIEDDAVRAAVRLSKRYITDRW 395
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561
LPDKAIDLVDEA SR + K T L+ + + +R A + G
Sbjct: 396 LPDKAIDLVDEAASRVRM-----KNTGGTDQLAGLRAEITEIVRQKDA---AISGQDY-- 445
Query: 562 DDVVASMGDTSEIVVESSLPSASDDDEPA--VVGPDDIAAVASLWSGIPVQQITADERML 619
+ A + D + + S +D+ VV DDIAA+ + W+GIPVQ+I A E
Sbjct: 446 -EAAAELRDREQELRAQLEASRRGEDQRTEIVVTEDDIAAIVAQWTGIPVQRIAAKESDR 504
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ LE+ + +RVIGQDEAV A+S+AV+R+R G+KDP RP + LF G TGVGKTELA++L
Sbjct: 505 LLALEKHIGRRVIGQDEAVRAVSKAVRRARAGVKDPRRPIGSFLFLGSTGVGKTELARAL 564
Query: 680 AACYFGS 686
A FGS
Sbjct: 565 AESVFGS 571
>gi|88854764|ref|ZP_01129430.1| ATP-dependent Clp protease, ATP-binding subunit [marine
actinobacterium PHSC20C1]
gi|88815925|gb|EAR25781.1| ATP-dependent Clp protease, ATP-binding subunit [marine
actinobacterium PHSC20C1]
Length = 825
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 255/617 (41%), Positives = 362/617 (58%), Gaps = 63/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEAKMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDSVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I Q T +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQDIIGQGQQQPT-------------GHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L KE ++ G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNKVRQQVIQLLGSFQGKEA-----------VAVGGN 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A +P + + L+QF +LT A + +DPVIGRE E++R++QIL RR+KNNP+L+G
Sbjct: 157 DA---TPDKG-SQVLDQFGRNLTQAARDGKLDPVIGREKEMERVMQILSRRSKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLAI IV +VP L K++ SLD+G L+AG++ RG+ E R+ + EI
Sbjct: 213 EPGVGKTAVVEGLAIAIVHGDVPETLKDKQLYSLDLGSLIAGSRYRGDFEERLKKVTKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+I+FIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIIVFIDEIHTLVGAGAA-----EGAIDAASILKPLLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
FEKD AL RRFQ V + EP+ + IL GLR+KYE+ H T AI AA +L+ RY+S
Sbjct: 328 FEKDAALERRFQSVQVHEPNLPHTINILKGLRDKYESFHKVSITDGAIVAAANLADRYVS 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAMHEV 553
DR+LPDKAIDL+DEAG+R + ILS PP DD E+R +
Sbjct: 388 DRFLPDKAIDLLDEAGARLRL-----------SILSAPPELREFDDKIAEVRGQK----- 431
Query: 554 VQGSRLKYD-DVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGI 607
+G+ D + AS+ D + ++ L + D +V IA V + +GI
Sbjct: 432 -EGAIEDQDFEKAASLRDEEKKLLGERLRLEKQWKSGDVGASGIVDEGLIAEVLAAATGI 490
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T +E L+ +E+ L RVIGQ+EA++ +S+ ++R+R GLKDPNRP+ + +F GP
Sbjct: 491 PVFKLTEEESSRLIFMEKALHMRVIGQEEAISVLSKTIRRTRAGLKDPNRPSGSFIFAGP 550
Query: 668 TGVGKTELAKSLAACYF 684
TGVGKTELAK+LA F
Sbjct: 551 TGVGKTELAKALAEFLF 567
>gi|251772527|gb|EES53093.1| putative ATP-dependent Clp protease, ATPase subunit [Leptospirillum
ferrodiazotrophum]
Length = 813
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/627 (40%), Positives = 386/627 (61%), Gaps = 53/627 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIA-EDRHPNGFLES-GITIDKAR 138
+ ++FTE+ K +I ++ EA+ D + T+H++L L+ +D P L+ G+T D+ R
Sbjct: 1 MMDKFTEKGRKVIIMAREEAEKHQNDYLGTEHIVLALVGDQDGVPVAVLKRMGLTPDQIR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ I + N G + ++P + KRV E AV+ +R G+ I EH
Sbjct: 61 ---MEIERNLLN---------GTATLTFGELPLTPRVKRVIEYAVDEARLLGHTHIGAEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LG+ +DG G++L+ LG ++ +A +L L K + S SG+
Sbjct: 109 LLLGVLREEDGIGGKILRALGANL-----LAARQLTASLLK-----------KAGSGSGR 152
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
KS AL++F DLT A++ +DPVIGR EI+R++QIL RRTKNNP+L+G
Sbjct: 153 EKERKSG----TPALDEFGRDLTQMATDGHLDPVIGRHDEIERVLQILGRRTKNNPVLIG 208
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
ESGVGKTAI EGLA +I+ EVP LL+KR+++LD+G L+AG K RG+ E R+ ++ E+
Sbjct: 209 ESGVGKTAIVEGLAQKIINGEVPDNLLNKRVVALDLGSLVAGTKYRGQFEERLKVVMKEV 268
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+G++I+FIDE+HTL+G+G +G+ +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 269 VTAGNIIVFIDELHTLVGAGAA----EGS-IDASNMLKPALSRGEIQCIGATTLDEYRKY 323
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EP E+A RI+LGLR++YE HH T +A++ AV LS RY++
Sbjct: 324 IEKDGALKRRFQPIYVNEPPVEEAERIILGLRDRYEEHHGVVITDDAVHDAVVLSERYVT 383
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKE--QQTCILSKPPDDYWQEIRTVQAMHEVVQG 556
DR+LPDKAID++DEAGSRA ++ + E + IL + Q IR Q E V+
Sbjct: 384 DRFLPDKAIDIIDEAGSRAKLKSYSLPSEIKELDAILKRSMKGKEQAIRE-QNFEEAVRF 442
Query: 557 SRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADE 616
+D++ + ++ +A + ++P V+G ++++ + S +GIP+ +I E
Sbjct: 443 R--TQEDLLRKQIEEEKL----KWKTAQEKNKP-VIGGEEVSVIVSKMTGIPLYRIEEGE 495
Query: 617 RMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELA 676
L+ LEE+L +RV+GQDEA++A++RA++RSR G+K RP + +F GPTGVGKTELA
Sbjct: 496 SERLLKLEEELHRRVVGQDEAISAVARAIRRSRAGIKGEKRPIGSFIFLGPTGVGKTELA 555
Query: 677 KSLAACYFGS----VRIHYLFFPSPFN 699
++LA FG+ +R+ + FN
Sbjct: 556 RTLAEVMFGNEDALIRVDMSEYMERFN 582
>gi|453382789|dbj|GAC82697.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia
paraffinivorans NBRC 108238]
Length = 827
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 246/590 (41%), Positives = 356/590 (60%), Gaps = 47/590 (7%)
Query: 103 LGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQG 160
L + + T+H+LLGLI E LES GI+++ R V I QG
Sbjct: 2 LNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVRSQVEEI------------IGQG 49
Query: 161 KPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGV 220
+ + + +PF+ K+V E ++ + G+N+I EHI LGL +G A +VL +LG
Sbjct: 50 QQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGA 108
Query: 221 DVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDL 280
D+N + + L G +G+EP +E G+++ +P + + L+QF +L
Sbjct: 109 DLNRVRQQVIQLLSG---YQGKEP------QEAGTGGRSSESGTP--STSLVLDQFGRNL 157
Query: 281 TARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340
TA A+E +DPVIGRE EI+R++Q+L RRTKNNP+L+GE GVGKTA+ EGLA IV +V
Sbjct: 158 TAAAAEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVNGKV 217
Query: 341 PVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTV 400
P L K++ +LD+G L+AG++ RG+ E R+ ++ EI GD+ILFIDE+HTL+G+G
Sbjct: 218 PETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAA 277
Query: 401 GRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQE 460
+G +D +++LKP L RGELQ I +TT DE+R EKD AL RRFQPV + EPS E
Sbjct: 278 ----EGA-IDAASILKPKLARGELQTIGATTLDEYRKYIEKDAALERRFQPVQVGEPSVE 332
Query: 461 DAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE 520
+ IL GLR++YE+HH T A+ AA L+ RYI+DR+LPDKAIDL+DEAG+R I
Sbjct: 333 HTIEILKGLRDRYESHHRVSITDGALVAAATLADRYINDRFLPDKAIDLIDEAGARMRIR 392
Query: 521 LFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSL 580
++ PPD + R +A E + + A++ D + +V
Sbjct: 393 R-----------MTAPPDLREFDERIAEARKEKESAIDAQDFEKAAALRDKEKQLVAERA 441
Query: 581 PSA-----SDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQD 635
D D A V + IA V W+GIPV ++T +E L+ +EE+L KR+IGQ+
Sbjct: 442 EREKQWRNGDMDVVAEVDDEQIAEVLGNWTGIPVFKLTEEETTRLLRMEEELHKRIIGQE 501
Query: 636 EAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685
+AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKTEL+K+LA FG
Sbjct: 502 DAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFG 551
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAREAVV 142
FT RA K + S REA LG + + T+H+LLGLI E ++ G +++ R+ V+
Sbjct: 59 FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVI 118
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSA 166
+ ++ +A G+ S
Sbjct: 119 QLLSGYQGKEPQEAGTGGRSSESG 142
>gi|429766421|ref|ZP_19298687.1| negative regulator of genetic competence ClpC/MecB [Clostridium
celatum DSM 1785]
gi|429184590|gb|EKY25601.1| negative regulator of genetic competence ClpC/MecB [Clostridium
celatum DSM 1785]
Length = 818
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 253/618 (40%), Positives = 367/618 (59%), Gaps = 58/618 (9%)
Query: 79 SSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLES-GITIDKA 137
S +F RFTERA ++ +Q+E+++ + T+H+LLG++ E+ + L S G+TIDK
Sbjct: 6 SMIFGRFTERAQIILVEAQQESQNFKHGYIGTEHVLLGILKENGYAGQLLISKGVTIDKV 65
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R+ T+D G S +M + KR+F+ ++E +R G +FI PE
Sbjct: 66 RKM------------TEDYLGFGDDEISTGEMLLTPRAKRLFDDSLEIARKYGNSFINPE 113
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI L L +G A +L VD + L + G KE
Sbjct: 114 HILLALINEGEGVAYTILTSCKVDFSSLKLELDKYIHGNEFKEN---------------- 157
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K + K + + L+Q+ DLT A EE +DPVIGR+ E QR+++ILCRR KNNP L+
Sbjct: 158 KKSTPKEKKQNKTPVLDQYSRDLTQCAREEKLDPVIGRDKETQRVLEILCRRIKNNPCLI 217
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI EGLA R+V ++P L KR++ LD+ ++AGAK RGE E R+ +++E
Sbjct: 218 GEPGVGKTAIIEGLAQRMVSGDIPEGLKDKRLLVLDITAMVAGAKYRGEFEERLKKVMNE 277
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++ D+I+FIDE+HT++G+G G +G +D SN+LKP+L RGE++CI +TT DE+R
Sbjct: 278 LKNEEDIIIFIDEIHTIVGAG----GAEG-AIDASNILKPALARGEIKCIGATTIDEYRK 332
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQ V + +P++E+ + IL GLR+KYE+HH K T A+ AV L+ RYI
Sbjct: 333 HIEKDAALERRFQTVNVEQPTKEETLNILFGLRDKYESHHKVKITDGALKMAVELADRYI 392
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHE----- 552
+DRY+PDKAIDL+DEA ++ I L+ PP+ +E+ + ++E
Sbjct: 393 TDRYMPDKAIDLIDEAAAKVRISR-----------LTLPPEIKQKELDIEKVINEKEDTI 441
Query: 553 ----VVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ +RL+ D + + E++ E + E +V DDIA V S+W+ +P
Sbjct: 442 RNQDFEKAARLR--DKEKQLKEEFEVIKEEWRTHSC--TEVQIVDEDDIATVVSIWAKVP 497
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
++++T E L+ LEE LK RVIGQDEA+ A++RAVKR+RVGLK+PNRP +FCGPT
Sbjct: 498 LEKLTEKESDKLLKLEELLKSRVIGQDEAIKALTRAVKRARVGLKNPNRPIGTFIFCGPT 557
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKTEL LA FG
Sbjct: 558 GVGKTELCNVLAEVMFGK 575
>gi|418668247|ref|ZP_13229649.1| negative regulator of genetic competence ClpC/MecB [Leptospira
interrogans serovar Pyrogenes str. 2006006960]
gi|410755756|gb|EKR17384.1| negative regulator of genetic competence ClpC/MecB [Leptospira
interrogans serovar Pyrogenes str. 2006006960]
Length = 844
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 242/606 (39%), Positives = 360/606 (59%), Gaps = 40/606 (6%)
Query: 85 FTERAVKAVI-FSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVS 143
FT+RA + + +Q EAK LG D + +H+LLGL+ E+ + + I +++ R+ V
Sbjct: 4 FTKRAKRVINEIAQDEAKRLGSDYIGPEHILLGLLKEEDSVAIKILNNINLNELRKEVER 63
Query: 144 IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGL 203
+ D A + +++ E + E ++ +N++ EHI L L
Sbjct: 64 RTREASGALLMDVAGGQDRY------------QKIIELSKEEAKRLKHNYVGTEHILLAL 111
Query: 204 FTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALK 263
++ AG L V+ N + + + L G P+ + GV + SG +
Sbjct: 112 LRDNNNIAGGALYSFSVNYNVIKSEILRLL-------GAPPTSSVGVSSTTQSGPQPRQE 164
Query: 264 SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323
+T+ L++F DLT A ++ +DPV+GR TEIQR+IQIL R+TKNNP+L+GESGVG
Sbjct: 165 ---KTKTPILDEFARDLTQLARDKKLDPVVGRATEIQRVIQILSRKTKNNPVLVGESGVG 221
Query: 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGD 383
KTAI EGLA+ IV+ VP L KR++SLD+ L+AG K RGE E R+ ++ EI S +
Sbjct: 222 KTAIVEGLALAIVEKSVPDLLFEKRVLSLDLASLIAGTKYRGEFEERLKKIMKEITSSTN 281
Query: 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDK 443
+I+FIDE+HTLIG+G +D +N+LKP+L RGELQCI +TT E+R EKD
Sbjct: 282 IIIFIDELHTLIGAGAA-----EGAVDAANILKPALARGELQCIGATTSAEYRKYIEKDS 336
Query: 444 ALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503
AL RRFQ V ++EPS +DA++IL GL++ YE HH +++ +A+ +V LS RYI+DRYLP
Sbjct: 337 ALERRFQVVKVAEPSVDDAIQILQGLKKAYETHHKVRYSDKALEQSVKLSHRYINDRYLP 396
Query: 504 DKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQA-MHEVVQGSRLKYD 562
DKAID++DEAG++A + C + D +EI+++ + E+V+ +
Sbjct: 397 DKAIDIIDEAGAKARL---------ANCARPQTIKDLEEEIKSLASKKEELVRAQEYEKA 447
Query: 563 DVVASMGDTSEIVVESSLPSASDDDEPAVVG--PDDIAAVASLWSGIPVQQITADERMLL 620
V + + +E L S + E V DDI +V SLW+GIP++++ E L
Sbjct: 448 AGVRDEVNRKKQAMEEKLRSWQEKMEDFAVNIEEDDILSVISLWTGIPLEKMEESESDKL 507
Query: 621 VGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680
+ LEE+LKKRV+GQ EA+ I++AV+R+R G K RPT + +F GPTGVGKTELAK+LA
Sbjct: 508 LRLEEELKKRVVGQAEAIEKIAKAVRRARTGFKSERRPTGSFIFLGPTGVGKTELAKALA 567
Query: 681 ACYFGS 686
FG+
Sbjct: 568 NFLFGN 573
>gi|444433681|ref|ZP_21228818.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia soli
NBRC 108243]
gi|443885471|dbj|GAC70539.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Gordonia soli
NBRC 108243]
Length = 828
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 245/590 (41%), Positives = 356/590 (60%), Gaps = 47/590 (7%)
Query: 103 LGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQG 160
L + + T+H+LLGLI E LES GI+++ R V I QG
Sbjct: 2 LNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVRSQVEEI------------IGQG 49
Query: 161 KPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGV 220
+ + + +PF+ K+V E ++ + G+N+I EHI LGL +G A +VL +LG
Sbjct: 50 QQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGA 108
Query: 221 DVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDL 280
D+N + + L G +G+EP +E G+++ +P + + L+QF +L
Sbjct: 109 DLNRVRQQVIQLLSG---YQGKEP------QEAGTGGRSSEAGTP--STSLVLDQFGRNL 157
Query: 281 TARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340
TA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+GE GVGKTA+ EGLA IV +V
Sbjct: 158 TAAAGEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVNGKV 217
Query: 341 PVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTV 400
P L K++ +LD+G L+AG++ RG+ E R+ ++ EI GD+ILFIDE+HTL+G+G
Sbjct: 218 PETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAA 277
Query: 401 GRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQE 460
+G +D +++LKP L RGELQ I +TT DE+R EKD AL RRFQPV + EPS E
Sbjct: 278 ----EGA-IDAASILKPKLARGELQTIGATTLDEYRKYIEKDAALERRFQPVQVGEPSVE 332
Query: 461 DAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE 520
+ IL GLR++YE+HH T A+ AA L+ RYI+DR+LPDKAIDL+DEAG+R I
Sbjct: 333 HTIEILKGLRDRYESHHRVSITDGALVAAATLADRYINDRFLPDKAIDLIDEAGARMRIR 392
Query: 521 LFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVV---- 576
++ PPD + R +A E + + A++ D + +V
Sbjct: 393 R-----------MTAPPDLREFDDRIAEARKEKESAIDAQDFEKAANLRDKEKQLVGERA 441
Query: 577 -ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQD 635
+ D D A V + IA V W+GIPV ++T +E L+ +E++L KR+IGQ+
Sbjct: 442 EREKQWRSGDMDVVAEVDDEQIAEVLGNWTGIPVFKLTEEETTRLLRMEDELHKRIIGQE 501
Query: 636 EAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685
+AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKTEL+K+LA FG
Sbjct: 502 DAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFG 551
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAREAVV 142
FT RA K + S REA LG + + T+H+LLGLI E ++ G +++ R+ V+
Sbjct: 59 FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVI 118
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMP 170
+ ++ +A G+ SS A P
Sbjct: 119 QLLSGYQGKEPQEAGTGGR--SSEAGTP 144
>gi|418046563|ref|ZP_12684651.1| ATPase AAA-2 domain protein [Mycobacterium rhodesiae JS60]
gi|353192233|gb|EHB57737.1| ATPase AAA-2 domain protein [Mycobacterium rhodesiae JS60]
Length = 845
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/613 (40%), Positives = 362/613 (59%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKE---------TAEAGTGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGESGNP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVAHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + A++ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAANLRDREKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVRAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALAEFLFGD 573
>gi|427393507|ref|ZP_18887285.1| hypothetical protein HMPREF9698_01091 [Alloiococcus otitis ATCC
51267]
gi|425730508|gb|EKU93343.1| hypothetical protein HMPREF9698_01091 [Alloiococcus otitis ATCC
51267]
Length = 836
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 254/638 (39%), Positives = 387/638 (60%), Gaps = 46/638 (7%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAREA 140
E FT++A + ++ +Q+EAKS + ++HLLLGLI E+ G E +T R+
Sbjct: 3 ELFTDKAKEVLLIAQKEAKSYNHYSIGSEHLLLGLIEEEEGIAGKVLRELDLTTQDVRDE 62
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ AQ S A +P+S ++V + A + +R + EH+
Sbjct: 63 LERFV----------TFAQDSKLPSNAILPYSYKARKVVQYAADEARKMQRKKVGTEHLL 112
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSR--LQGELAKEGREPSLAKGVRENSISGK 258
LGL D + ++L+ L VD++ + + + + + + +++G+ + + R+ + G
Sbjct: 113 LGLLRDDKLLSAKLLENLAVDLSSVRQLVLEKFGISDQASRQGQRRTRS---RKQGMGGH 169
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A + G T L+ DLTA A+++ +DP++GR+ EI+RI Q+L RRTKNNP+L+G
Sbjct: 170 PANSQEAGGT--PTLDALARDLTAMAAKKDLDPIVGRDLEIRRITQVLSRRTKNNPVLVG 227
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E+GVGKTAIAEGLA +IV EVP L +KR+M+LDMG L+AG K RGE E R+ +I+EI
Sbjct: 228 EAGVGKTAIAEGLAQKIVNKEVPPVLQNKRLMTLDMGSLVAGTKYRGEFEDRMKKIINEI 287
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
G+VILFIDE+HTLIG+G+ +D SNL+KP+L RGELQ I +TT DE++
Sbjct: 288 YNDGNVILFIDELHTLIGAGSA-----EGAIDASNLIKPALARGELQTIGATTLDEYQKH 342
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRF VL+ +PS+ + V IL GL+++YE HH + + EA+ AV LS RYI+
Sbjct: 343 IEKDPALERRFASVLVKQPSEAETVEILNGLKDRYEDHHGVEISQEAVEQAVKLSIRYIT 402
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCI---LSKPPDDYWQEIRTVQAMHEVVQ 555
DR LPDKAIDL+DEA ++ ++ + + Q+ + K D Y ++ R +Q E +
Sbjct: 403 DRQLPDKAIDLIDEASAKVRLD----QTDGQSNLNEATEKLNDLYKEKDRLIQN-QEFEE 457
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDD---DEPAVVGPDDIAAVASLWSGIPVQQI 612
++++ ++ T + V+ D D P V G +DIA V + W+GIPV+++
Sbjct: 458 AAKIRKQEM------TQQNKVQKLYKEKQDQGQADRPKVKG-EDIADVVAQWTGIPVKEM 510
Query: 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672
+E L+ LE+ L +RV+GQ+EAV A+S+A++R+R GLKDPNRP + +F GPTGVGK
Sbjct: 511 KKEESQRLLQLEDNLHERVVGQEEAVKAVSKAIRRARSGLKDPNRPIGSFIFLGPTGVGK 570
Query: 673 TELAKSLAACYFGS----VRIHYLFFPSPFNSVKVALS 706
TELAK++AA FGS +RI F ++ ++A S
Sbjct: 571 TELAKTVAATLFGSEDDLIRIDMSEFMEKHSTSRLAGS 608
>gi|256397471|ref|YP_003119035.1| ATPase AAA [Catenulispora acidiphila DSM 44928]
gi|256363697|gb|ACU77194.1| ATPase AAA-2 domain protein [Catenulispora acidiphila DSM 44928]
Length = 850
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 255/621 (41%), Positives = 366/621 (58%), Gaps = 67/621 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 QQVEEII------------GQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L G G + + +
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSG-----------YSGGGKEAAAAG 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A +P + + L+QF +LT A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 157 GPAEGTP--STSLVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV+ EVP L K + +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 215 EPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD++LFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 275 RTRGDIVLFIDELHTLVGAGAA-----EGAIDAASILKPMLARGELQTIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ ++EPS + IL GLR++YEAHH T A+ AA L+ RYIS
Sbjct: 330 VEKDAALERRFQPIQVAEPSVAHTIEILKGLRDRYEAHHRVSITDSALVAAATLAERYIS 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
DR+LPDKAIDL+DEAGSR I ++ PPD ++ +I V+ E
Sbjct: 390 DRFLPDKAIDLIDEAGSRMRIRR-----------MTAPPDLREFDDKIANVRKEKE---- 434
Query: 557 SRLKYDDV--VASMGDTSEIVVESSLPSA----------SDDDEPAVVGPDDIAAVASLW 604
S + D A++ D E L A D D A V + IA V +
Sbjct: 435 SAIDAQDFEKAAALRDQ-----EKQLQGAKARREKEWKQGDLDVVAEVDEELIAEVLATA 489
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+GIPV ++T +E L+ +E++L KRVIGQ++A+ +S+A++R+R GLKDP RP + +F
Sbjct: 490 TGIPVFKLTEEETSRLLRMEDELHKRVIGQNQAIKGLSQAIRRTRAGLKDPKRPGGSFIF 549
Query: 665 CGPTGVGKTELAKSLAACYFG 685
GP+GVGKTELAK+LA FG
Sbjct: 550 AGPSGVGKTELAKALAEFLFG 570
>gi|227512856|ref|ZP_03942905.1| ATPase/chaperone ClpC [Lactobacillus buchneri ATCC 11577]
gi|227083856|gb|EEI19168.1| ATPase/chaperone ClpC [Lactobacillus buchneri ATCC 11577]
Length = 831
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 243/608 (39%), Positives = 356/608 (58%), Gaps = 40/608 (6%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSI 144
FT A + +Q +AK + T+HLLLGL+ E +GI ++ V+
Sbjct: 5 FTPSAKNVLTIAQEQAKKFKHQAIGTEHLLLGLLIE--------TNGIAYKALQQFSVTA 56
Query: 145 WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLF 204
T + K SS +P+S K V A E+++ G + EHI L L
Sbjct: 57 EDITEEVERFAGYGNLKDLSSNDYLPYSPKAKEVLAQAGEFAKKNGVPKVGTEHILLSLL 116
Query: 205 TVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKS 264
T + + R+L LG+D++ + V + R+ ++ G +++S K +
Sbjct: 117 TDETILSSRILINLGLDLSQIRKVTL-----------RKMGISGGSMASNMSSKQRGTR- 164
Query: 265 PGRTRAS---ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
P + + S ++ DLT A E +DP IGR+ E++R++QIL RRTKNNP+L+GE G
Sbjct: 165 PSKQKDSKTPTIDSLARDLTEMARENRLDPTIGRDLEVKRVVQILARRTKNNPVLIGEPG 224
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA RIV +VP +++KR+M LDMG L+AG K RGE E R+ +I EI +
Sbjct: 225 VGKTAIAEGLAERIVNGDVPGDMVNKRLMMLDMGSLVAGTKYRGEFEDRLKKVIEEIYQD 284
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQ I +TT DE++ E
Sbjct: 285 GNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQLIGATTLDEYQKYIES 339
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRF V + EP+ ++ V+IL GLR KYE HH+ + T +AI AV+LS RYISDR+
Sbjct: 340 DAALERRFAKVTVDEPTADETVQILKGLRPKYEQHHHVEITDDAIETAVNLSNRYISDRF 399
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILS--KPPDDYWQEIRTVQAMHEVVQGSRL 559
LPDKAIDL+DEA ++ I+ Q + ++ K D ++ + + S++
Sbjct: 400 LPDKAIDLMDEAAAKVRIDHL-----QNSDVVDDHKKLSDLLAQLNEALVAQDYEKASKI 454
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDE-PAVVGPDDIAAVASLWSGIPVQQITADERM 618
+ + D E+ + P S + P D+A + + W+GIPV +++ E
Sbjct: 455 RKQ--ANKLQD--ELTKQDEEPEESSEAHYPVKETSQDVAQIVAEWTGIPVTRLSKTEAD 510
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
LV LE L +RV+GQ+EA++A+SR+++R+R GLKDPNRP + +F GPTGVGKTELAK+
Sbjct: 511 RLVNLEAVLHQRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKA 570
Query: 679 LAACYFGS 686
+A FGS
Sbjct: 571 VAEAVFGS 578
>gi|283779663|ref|YP_003370418.1| ATPase AAA [Pirellula staleyi DSM 6068]
gi|283438116|gb|ADB16558.1| ATPase AAA-2 domain protein [Pirellula staleyi DSM 6068]
Length = 852
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/616 (38%), Positives = 360/616 (58%), Gaps = 40/616 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID--KAR 138
++ERFT+RA K + + +EA+ + + T+H+LLGL+ E + + +D K R
Sbjct: 1 MYERFTDRARKVMQLANQEAQRFNHEYIGTEHILLGLVKEGSGVAANVLKNLDVDLRKIR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V + S G + K+P + K+V E ++E +R+ +N++ EH
Sbjct: 61 LEVEKLVQS------------GPEMVTMGKLPQTPRAKKVIEYSMEEARNLNHNYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI-SG 257
I LGL +G A +VL LG+ + + ++ L L E + SG
Sbjct: 109 ILLGLLREQEGVAAQVLMNLGLKLEEVREEVLNLLGHGLEGESTGERGGREGVGVGGQSG 168
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ A +++ AL+ F DLT A + +DPVIGRE EI+R IQ+LCRRTKNNP+LL
Sbjct: 169 EQQAAGRGSKSKTPALDSFGRDLTELARQNKLDPVIGREREIERAIQVLCRRTKNNPVLL 228
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE+GVGKTAI EG A R+V VP L KRI+ LD+ +++AG K RG+ E R+ +++E
Sbjct: 229 GEAGVGKTAIVEGFAQRVVAGSVPEILADKRIVVLDLAMMVAGTKYRGQFEERIKAVMNE 288
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
++++ + ILFIDE+HTL+G+G G +G +D +N+LKP+L RGE+QCI +TT DE+R
Sbjct: 289 VRRARNTILFIDELHTLVGAG----GAEG-AIDAANVLKPALARGEIQCIGATTLDEYRK 343
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD ALARRFQ +++ S+++ V IL GLREKYE HH + T +A+ AA S RYI
Sbjct: 344 YIEKDAALARRFQEIIVEPTSKDETVEILKGLREKYEDHHRVQITDDALVAAAEYSERYI 403
Query: 498 SDRYLPDKAIDLVDEAGSRAHIELFKR-----KKEQQTCILSKPPDDYW--QEIRTVQAM 550
+ R LPDKAID++DEAG+R + R + + + L+K ++ Q+ A+
Sbjct: 404 TARCLPDKAIDVIDEAGARVRLRAMTRPPDLKEIDDEVERLNKEKEEAVANQDFEKAAAL 463
Query: 551 HEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610
+ + K D++ D S + VV + IA V S +GIP+
Sbjct: 464 RDQADKLKRKKDNITKEWRDKSR-------------ETDGVVDEEVIAEVVSKMTGIPLT 510
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
+++ ++ + L+ +EE+L K+VI QD+AV AI++AV+R+R GLKDP RP +F GPTGV
Sbjct: 511 RMSTEDSLRLMKMEEELHKKVISQDQAVTAIAKAVRRTRSGLKDPRRPAGCFVFAGPTGV 570
Query: 671 GKTELAKSLAACYFGS 686
GKT LAK+LA FG
Sbjct: 571 GKTLLAKALAEFMFGD 586
>gi|91200776|emb|CAJ73829.1| strongly similar to negative regulator of genetic competence
ClpC/MecB [Candidatus Kuenenia stuttgartiensis]
Length = 826
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 244/617 (39%), Positives = 362/617 (58%), Gaps = 58/617 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F+RFT+RA K + ++ EA+ + + T+H+LLGL+ E N + + K R
Sbjct: 1 MFDRFTDRARKVMALAREEARRFNHEYIGTEHILLGLVKEGSGVAANVLQNLDVELKKIR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ I G S ++PF+ K+V E A+E +R+ G+N+I EH
Sbjct: 61 IEIEKIVQG------------GSDLVSVGQLPFTPRVKKVLEYAMEEARALGHNYIGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL LGV + + L E +NS S +
Sbjct: 109 LLLGLLKEQEGVAAQVLLNLGVKPAEVREEVIGLLGSESV-------------QNSQSQE 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
K GR++ AL+ F DLT +A E+ +DPVIGR+ I+R++Q+LCRRTKNNP+LLG
Sbjct: 156 KEEKK--GRSKTPALDSFGRDLTQQAREKELDPVIGRKDVIERVVQVLCRRTKNNPVLLG 213
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E+GVGKTAI EGLA +V +VP L +RI++LD+ +++AG K RG+ E R+ ++SE+
Sbjct: 214 EAGVGKTAIVEGLAQVVVHGDVPELLRGRRIVALDLAMMVAGTKYRGQFEERIKAVMSEV 273
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ ++ILFIDE+HTL+G+G G +G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 274 KRAKNIILFIDELHTLVGAG----GAEG-AIDASNVLKPALSRGEIQCIGATTLDEYRKY 328
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQ +++ PS+E+ V IL GLR++YE+HH + T EA+ AA LS RYI+
Sbjct: 329 IEKDGALERRFQTIIVEPPSKEETVEILKGLRDRYESHHKVRITDEALEAATELSVRYIT 388
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQ---------A 549
R+LPDKAID++DEA +R ++ ++PPD E ++ A
Sbjct: 389 GRFLPDKAIDIIDEACARLRLK-----------ATTQPPDVKHLEDEIIRLEKEKDESVA 437
Query: 550 MHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPV 609
+ + + +RL+ VVE + E V + + V S +GIP+
Sbjct: 438 IQDFERAARLRDKADKMKKKKE---VVEREWREKHAELE-GEVDVEIVDEVVSKMTGIPI 493
Query: 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669
+I + E L+ +EE+L K VI Q+EA AIS+A++RSR LK+PNRP A+ +F GP+G
Sbjct: 494 SRIESTEANKLLHMEEELHKMVISQEEATRAISKAIRRSRARLKNPNRPVASFIFVGPSG 553
Query: 670 VGKTELAKSLAACYFGS 686
VGKT LA+SLA FG
Sbjct: 554 VGKTHLARSLAKLVFGE 570
>gi|435852942|ref|YP_007314261.1| ATPase with chaperone activity, ATP-binding subunit
[Halobacteroides halobius DSM 5150]
gi|433669353|gb|AGB40168.1| ATPase with chaperone activity, ATP-binding subunit
[Halobacteroides halobius DSM 5150]
Length = 811
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 260/607 (42%), Positives = 376/607 (61%), Gaps = 45/607 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+F RFTERA + + FSQ+EA++LG + V T+HLLLGL+ E ++ + +D R
Sbjct: 2 LFGRFTERAKEVMSFSQKEAQNLGHNYVGTEHLLLGLLKEGEGIAAKVLKKNKLQLDDLR 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
+ + + Q +A + F+ TK+V + E +R G+N++ EH
Sbjct: 62 NKIKDMIGESEGQ------------LNAKTLSFTPRTKKVLNLSSEEARRLGHNYVGTEH 109
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A R+LK+ G++ + + V+ L G AK ++N+ GK
Sbjct: 110 LLLGLLKEGEGVAARILKKEGLEFDKIKKQVVNMLGG-----------AK--KKNNGYGK 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ + G+ L+Q+ DLT A+E +DPVIGR EI+R+IQIL RR KNNP+L+G
Sbjct: 157 YKSGRHKGK-----LDQYSRDLTQLAAEGKLDPVIGRNKEIKRVIQILSRRRKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RI + EVP L++KRI++LD+ ++AG+K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAIAEGLAQRIAEEEVPETLVNKRILALDLSSMLAGSKYRGEFEKRLKAIMKEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+SGDVILFIDE+H L+G+G G +G +D +N+LKP+L RGELQ I +TT DE+R
Sbjct: 272 SESGDVILFIDELHNLVGAG----GAEG-AIDAANILKPALARGELQTIGATTLDEYRKH 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
E+D AL RRFQ +L+ EP+ ED V+IL GLR+ YEAHH K T +AI AA LS RYI+
Sbjct: 327 VEEDAALERRFQSILVEEPTIEDTVKILKGLRDVYEAHHRVKITDDAIMAAAELSHRYIN 386
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DE+GS+A ++ E + LSK + QE E + +
Sbjct: 387 DRFLPDKAIDLIDESGSQARLQENTAPNELKQ--LSKKLERIEQEKEAAIEAQEFEEAAD 444
Query: 559 LKYDDVVASMGDT-SEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADER 617
L+ D + D EI E ++ V+ ++IA + S W+G+PV ++ +E
Sbjct: 445 LR--DQEQQIKDQLEEIKTEWKNEKGMNE---TVITKENIAEIVSDWTGVPVTKLAQEES 499
Query: 618 MLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAK 677
L+ LE +L +RV+GQDEAV ++++A++R+R GLKDP RP + +F GPTGVGKTELAK
Sbjct: 500 ERLLNLEAELHERVVGQDEAVESVAQAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELAK 559
Query: 678 SLAACYF 684
+LA F
Sbjct: 560 TLAESMF 566
>gi|429737544|ref|ZP_19271402.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
oral taxon 138 str. F0429]
gi|429152350|gb|EKX95180.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
oral taxon 138 str. F0429]
Length = 852
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 264/607 (43%), Positives = 355/607 (58%), Gaps = 47/607 (7%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLI-AEDRHPNGFLES-GITIDKAREAVV 142
FT+ A+KAV FSQ A+ GK + T LLLG++ D L+ G D A +
Sbjct: 25 FTQAAIKAVEFSQYIAQRRGKGYIGTGQLLLGIMHMRDTIAAEVLDKFGADYDSAEQV-- 82
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPF-SISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
I +S QD A +P+ + +RV + A++ +R +F+ EHI L
Sbjct: 83 -IRNSDGFQDV---------LHPAEDVPYYTRRAQRVMQGAIDTAREE-RSFVTTEHILL 131
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
L T +G+A L+ L VD+ L + + R+ A+E +E S + + G A+
Sbjct: 132 SLLTEAEGTAVHTLEELDVDIEELQSEVLERMSE--AEESKEKSSRRKPNKGGAKGLPAS 189
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
LK GR DL A IDPVIGR EI R+IQIL RRTKNNPILLGE+G
Sbjct: 190 LKKFGR-----------DLIGVARTGGIDPVIGRAAEIDRVIQILARRTKNNPILLGEAG 238
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA RI EVP L KR+++L M L+AG K RGE E R+ ++ ++ K+
Sbjct: 239 VGKTAIAEGLAQRIADGEVPFLLEDKRVVTLSMTALVAGTKYRGEFEERLKNVVDDVIKA 298
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
++ILFIDE+H LI +G G +G+ LD +N+LKP+L RGE+Q I +TT E++ F K
Sbjct: 299 KNIILFIDEIHMLIRAG----GAEGS-LDAANILKPALARGEMQIIGATTLSEYKKHFAK 353
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D ALARRFQ V++ EP +EDA +IL GLR KYE H + A+ AAV LS RYI+DR+
Sbjct: 354 DSALARRFQTVMVEEPGEEDAEQILFGLRSKYEEFHRARIEDNAVRAAVRLSKRYITDRW 413
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561
LPDKAIDLVDEA SR + K T L+ + + +R A + G
Sbjct: 414 LPDKAIDLVDEAASRVRM-----KNTGGTDQLAGLRAEITEIVRQKDA---AISGQDY-- 463
Query: 562 DDVVASMGDTSEIVVESSLPSASDDDEPA--VVGPDDIAAVASLWSGIPVQQITADERML 619
+ A + D + + S +D+ A VV DDIAAV + W+GIPVQ+I A E
Sbjct: 464 -EAAAELRDREQELRAQLEASRRGEDQRAEIVVTEDDIAAVVAQWTGIPVQRIAAKESDR 522
Query: 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSL 679
L+ LE+ + +RVIGQDEAV A+S+AV+R+R G+KDP RP + LF G TGVGKTELA++L
Sbjct: 523 LLALEKHIGRRVIGQDEAVRAVSKAVRRARAGVKDPRRPIGSFLFLGSTGVGKTELARAL 582
Query: 680 AACYFGS 686
A FGS
Sbjct: 583 AESVFGS 589
>gi|414153535|ref|ZP_11409858.1| Negative regulator of genetic competence ClpC/MecB
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411454933|emb|CCO07762.1| Negative regulator of genetic competence ClpC/MecB
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 814
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 263/619 (42%), Positives = 373/619 (60%), Gaps = 61/619 (9%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F+RFTERA K ++ +Q EA+ L + T+H+LLGLI E + I+ DK R
Sbjct: 1 MFQRFTERAQKVLVLAQEEARRLKYPYIGTEHILLGLIREGEGIAAKVLAQLNISADKVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
AV + + N + A +P + KRV E AVE SR G+N++ EH
Sbjct: 61 TAVEQMVETGNQ-------------TVPADIPPTPRAKRVLELAVEESRRLGHNYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL LG D+ + + + L G G + + G G
Sbjct: 108 LLLGLLREGEGVAAQVLTGLGADLERVRQLVTNMLGG--TPGGHQSAGGHG------QGC 159
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A G + +L+QF DLT A E+ +DPV+GR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 160 PA-----GGCKTVSLDQFSRDLTRLAGEDKLDPVVGRSKEIERVIQVLSRRTKNNPVLIG 214
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA RIV VP LL++R+++LD+ ++AG K RGE E R+ ++ EI
Sbjct: 215 EPGVGKTAIAEGLAQRIVSGNVPEILLNRRVVTLDLAGMVAGTKYRGEFEDRLKKIMEEI 274
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++I+FIDE+HTLIG+G +D +N+LKP+L RGE+Q I +TT DE+R
Sbjct: 275 KQAGNIIVFIDELHTLIGAGAA-----EGAIDAANILKPALARGEIQTIGATTLDEYRKY 329
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E+ V IL G+R+KYEAHH + T EA+ AA LS RYI+
Sbjct: 330 IEKDPALERRFQPIQVDEPTVEETVEILKGIRDKYEAHHKVRITDEALTAAAKLSDRYIT 389
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD-----DYWQEIRTVQAM--- 550
DR+LPDKAIDL+DEA SR I+ L+ PPD +EIR +
Sbjct: 390 DRFLPDKAIDLIDEAASRVRIK-----------ALTMPPDLKDKEKLLEEIRKEKEAAIN 438
Query: 551 -HEVVQGSRLKYDD--VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGI 607
E + + L+ + ++A + E+ S S D+ VV +DIA + + W+G+
Sbjct: 439 NQEFEKAAELRDREHAILAELNQAK----ENWHQSKSGDN--LVVSEEDIAHIVASWTGV 492
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV+++ +E L+ LEE L +RV+GQ+EAV A++RAV+R+R GLKDP RP + +F GP
Sbjct: 493 PVKKLAQEESERLLNLEEVLHRRVVGQNEAVKAVARAVRRARAGLKDPKRPVGSFIFLGP 552
Query: 668 TGVGKTELAKSLAACYFGS 686
TGVGKTELA++LA FG
Sbjct: 553 TGVGKTELARALAEALFGD 571
>gi|415726926|ref|ZP_11471154.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 00703Dmash]
gi|388062655|gb|EIK85260.1| ATPase AAA-2 domain protein [Gardnerella vaginalis 00703Dmash]
Length = 868
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/616 (40%), Positives = 372/616 (60%), Gaps = 53/616 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFT+RA + ++ +Q EA+SL + + T+H+LLGLI E GI KA +
Sbjct: 1 MFERFTDRARRVIVLAQEEARSLQHNYIGTEHILLGLIREG--------DGIAA-KALSS 51
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
ST Q ++ +G + + +PF+ K+V E ++ + G+++I EHI
Sbjct: 52 KGVDLESTRKQ-VEEMIGKG-AVAPSGHIPFTPHAKQVLELSLREALQLGHSYIGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G +VL ++ VD+ L + V ++G + + KG N+ S +
Sbjct: 110 LGLIREGEGIGTQVLIKMEVDLGDLRSTTVDLIRGGSSTNSEDE---KGELANAGSVQDK 166
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ KS ++ L+QF +LT A E +DPVIGR EI+R++ IL RRTKNNP+L+G+
Sbjct: 167 SNKSG----SALLDQFGRNLTLEAREGKLDPVIGRSEEIERVMVILSRRTKNNPVLIGDP 222
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTA+ EGLA +IV+ +VP L +K+I SLD+G ++AG++ RG+ E R+ ++ EI+
Sbjct: 223 GVGKTAVVEGLAQKIVEGDVPETLKNKQIYSLDLGSMIAGSRYRGDFEERLKKVLKEIKT 282
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
GDV+LFIDE+HT++G+G+ L S++LKP L RGELQ I +TT DE+R E
Sbjct: 283 RGDVVLFIDEIHTIVGAGSA-----DGALGASDMLKPMLARGELQTIGATTTDEYRKYIE 337
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + EP+ + + IL GLR +YE HH+ T A+ ++ LS RYI DR
Sbjct: 338 KDAALERRFQPIQVPEPTIAETIEILKGLRSRYENHHHVTITDGALQSSAELSDRYIQDR 397
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLK 560
+LPDKAIDL+DEAG+R I KR L++PP+ +E+ A + +K
Sbjct: 398 HLPDKAIDLIDEAGARLRI---KR--------LTQPPE--LKELNHKIAKISEKKDEAIK 444
Query: 561 YDDV--VASMGDTSEIVVESSLPSASDDDEPA----------VVGPDDIAAVASLWSGIP 608
D A++ D E L + + + E A VV D IA+V S +GIP
Sbjct: 445 QQDFEEAANLRDDQE-----KLENEAAEKEKAWREGESNVKMVVDEDMIASVVSSTTGIP 499
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
V ++T E L+ +E +L KR++GQDEAV+A++R+++R+RVGLKDP RP+ + +F GPT
Sbjct: 500 VVKLTQAESQKLLQMESELHKRIVGQDEAVSALARSIRRARVGLKDPKRPSGSFIFAGPT 559
Query: 669 GVGKTELAKSLAACYF 684
GVGKTELAK+LA F
Sbjct: 560 GVGKTELAKALANFLF 575
>gi|432350661|ref|ZP_19594017.1| ATP-binding subunit of ATP-dependent Clp protease, partial
[Rhodococcus wratislaviensis IFP 2016]
gi|430770005|gb|ELB86004.1| ATP-binding subunit of ATP-dependent Clp protease, partial
[Rhodococcus wratislaviensis IFP 2016]
Length = 584
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 247/590 (41%), Positives = 351/590 (59%), Gaps = 49/590 (8%)
Query: 103 LGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQG 160
L + + T+H+LLGLI E LES GI+++ R V I QG
Sbjct: 2 LNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEII------------GQG 49
Query: 161 KPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGV 220
+ S +PF+ K+V E ++ + G+N+I EHI LGL +G A +VL +LG
Sbjct: 50 QQAPSG-HIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGA 108
Query: 221 DVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDL 280
D+N + + L G +G+EP+ A G R + + T+ + L+QF +L
Sbjct: 109 DLNRVRQQVIQLLSG---YQGKEPAEAGGTRGEAGTPSTSLV----------LDQFGRNL 155
Query: 281 TARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340
T A E +DPVIGR EI+R++Q+L RRTKNNP+L+GE GVGKTA+ EGLA IV EV
Sbjct: 156 TQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVNGEV 215
Query: 341 PVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTV 400
P L K++ +LD+G L+AG++ RG+ E R+ ++ EI GD+ILFIDE+HTL+G+G
Sbjct: 216 PETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAA 275
Query: 401 GRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQE 460
+G +D +++LKP L RGELQ I +TT DE+R EKD AL RRFQPV + EP+ E
Sbjct: 276 ----EGA-IDAASILKPKLARGELQTIGATTLDEYRKYIEKDAALERRFQPVQVGEPTVE 330
Query: 461 DAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE 520
+ IL GLR++YEAHH T A+ AA L+ RYI+DR+LPDKAIDL+DEAG+R I
Sbjct: 331 HTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYINDRFLPDKAIDLIDEAGARMRIR 390
Query: 521 LFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSL 580
++ PPD + + A E + + A++ D + +V
Sbjct: 391 R-----------MTAPPDLREFDDKIADARREKESAIDAQDFEKAANLRDKEKTLVAQRA 439
Query: 581 P-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQD 635
+ D D A V + IA V W+GIPV ++T +E L+ +EE+L KR+IGQ+
Sbjct: 440 EREKQWRSGDLDVIAEVDDEQIAEVLGNWTGIPVFKLTEEETTRLLRMEEELHKRIIGQE 499
Query: 636 EAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685
+AV A+++A++R+R GLKDP RP+ + +F GP+GVGKTELAKSLA FG
Sbjct: 500 DAVKAVAKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELAKSLANFLFG 549
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG--FLESGITIDKAREAVV 142
FT RA K + S REA LG + + T+H+LLGLI E ++ G +++ R+ V+
Sbjct: 59 FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVI 118
Query: 143 SIWHSTNNQDTDDAAA-QGKPFSSAAKMPFSISTKRVFEAAVE 184
+ ++ +A +G+ + + + + + +AA+E
Sbjct: 119 QLLSGYQGKEPAEAGGTRGEAGTPSTSLVLDQFGRNLTQAALE 161
>gi|227509922|ref|ZP_03939971.1| ATP-binding Clp protease subunit [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227190528|gb|EEI70595.1| ATP-binding Clp protease subunit [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 831
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 243/608 (39%), Positives = 356/608 (58%), Gaps = 40/608 (6%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSI 144
FT A + +Q +AK + T+HLLLGL+ E +GI ++ V+
Sbjct: 5 FTPSAKNVLTIAQEQAKKFKHQAIGTEHLLLGLLIE--------TNGIAYKALQQFSVTA 56
Query: 145 WHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLF 204
T + K SS +P+S K V A E+++ G + EHI L L
Sbjct: 57 EDITEEVERFAGYGNLKDLSSNDYLPYSPKAKEVLAQAGEFAKKNGVPKVGTEHILLSLL 116
Query: 205 TVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKS 264
T + + R+L LG+D++ + V + R+ ++ G +++S K +
Sbjct: 117 TDETILSSRILINLGLDLSQIRKVTL-----------RKMGISGGSMASNMSSKQRGAR- 164
Query: 265 PGRTRAS---ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
P + + S ++ DLT A E +DP IGR+ E++R++QIL RRTKNNP+L+GE G
Sbjct: 165 PSKQKDSKTPTIDSLARDLTEMARENRLDPTIGRDLEVKRVVQILARRTKNNPVLIGEPG 224
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA RIV +VP +++KR+M LDMG L+AG K RGE E R+ +I EI +
Sbjct: 225 VGKTAIAEGLAERIVNGDVPGDMVNKRLMMLDMGSLVAGTKYRGEFEDRLKKVIEEIYQD 284
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G++ILFIDE+HTLIG+G G +G +D SN+LKP+L RGELQ I +TT DE++ E
Sbjct: 285 GNIILFIDELHTLIGAG----GAEG-AIDASNILKPALARGELQLIGATTLDEYQKYIES 339
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRF V + EP+ ++ V+IL GLR KYE HH+ + T +AI AV+LS RYISDR+
Sbjct: 340 DAALERRFAKVTVDEPTADETVQILKGLRPKYEQHHHVEITDDAIETAVNLSNRYISDRF 399
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILS--KPPDDYWQEIRTVQAMHEVVQGSRL 559
LPDKAIDL+DEA ++ I+ Q + ++ K D ++ + + S++
Sbjct: 400 LPDKAIDLMDEAAAKVRIDHL-----QNSDVVDDHKKLSDLLAQLNEALVAQDYEKASKI 454
Query: 560 KYDDVVASMGDTSEIVVESSLPSASDDDE-PAVVGPDDIAAVASLWSGIPVQQITADERM 618
+ + D E+ + P S + P D+A + + W+GIPV +++ E
Sbjct: 455 RKQ--ANKLQD--ELTKQDEEPEESSEAHYPVKETSQDVAQIVAEWTGIPVTRLSKTEAD 510
Query: 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKS 678
LV LE L +RV+GQ+EA++A+SR+++R+R GLKDPNRP + +F GPTGVGKTELAK+
Sbjct: 511 RLVNLEAVLHQRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKA 570
Query: 679 LAACYFGS 686
+A FGS
Sbjct: 571 VAEAVFGS 578
>gi|87309320|ref|ZP_01091456.1| negative regulator of genetic competence ClpC/MecB [Blastopirellula
marina DSM 3645]
gi|87287959|gb|EAQ79857.1| negative regulator of genetic competence ClpC/MecB [Blastopirellula
marina DSM 3645]
Length = 849
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 242/618 (39%), Positives = 366/618 (59%), Gaps = 50/618 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID--KAR 138
++ERFT+RA K + + +EA+ + + T+H+LLGLI E + + +D K R
Sbjct: 1 MYERFTDRARKVMQLANQEAQRFNHEYIGTEHILLGLIKEGSGVAANVLKTLEVDLRKIR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V + S G + K+P + K+V E ++E +R+ +N++ EH
Sbjct: 61 LEVEKLVQS------------GPDMVTMGKLPQTPRAKKVIEYSMEEARNLNHNYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL LG+ + + ++ L G E + R S
Sbjct: 109 ILLGLLREQEGVAAQVLMNLGLKLEDVREEVLN-----LLGHGMEGDGGREGRGQPESSS 163
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A +++ AL+ F DLT A + +DPVIGRE EI+R IQ+LCRRTKNNP+LLG
Sbjct: 164 DPAAAKGSKSKTPALDSFGRDLTELAKQGKLDPVIGREREIERAIQVLCRRTKNNPVLLG 223
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E+GVGKTAI EG A R++ ++P L KRI+ LD+ +++AG K RG+ E R+ +++E+
Sbjct: 224 EAGVGKTAIVEGFAQRVIDGDIPELLAEKRIVVLDLAMMVAGTKYRGQFEERIKAVMNEV 283
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ + ILFIDE+HTL+G+G G +G +D +N+LKP+L RGE+QCI +TT DE+R
Sbjct: 284 RRAKNTILFIDELHTLVGAG----GAEG-AIDAANVLKPALARGEIQCIGATTLDEYRKY 338
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD ALARRFQ + + S+++ V IL GLR++YE HHN + T +A+ AA S RYI+
Sbjct: 339 IEKDSALARRFQEIQVDPASKDETVEILKGLRDRYEEHHNVQITDDAVVAAAEYSDRYIT 398
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEIRTVQAMHEVVQG 556
R LPDKAID++DEAG+R + ++++PPD + +E+ T+ E Q
Sbjct: 399 GRCLPDKAIDVIDEAGARVRLR-----------VMTRPPDLKEIDEEVETLNRKKE--QA 445
Query: 557 SRLKYDDVVASMGDTSE--------IVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIP 608
+ + A++ D ++ I+ E S D VV + IA V S +GIP
Sbjct: 446 VADQDFEKAAALRDQADKLKKKKDSIIKEWQEKSRQKD---GVVDEEVIAEVVSKMTGIP 502
Query: 609 VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668
+ ++T ++ M L+ +E++L ++VI Q +A+ A+S+AV+RSR GLKDP RPT +F GPT
Sbjct: 503 LTRMTTEDTMRLMQMEDELHRKVISQHDAIKAVSKAVRRSRSGLKDPKRPTGCFVFAGPT 562
Query: 669 GVGKTELAKSLAACYFGS 686
GVGKT LAK+LA FG
Sbjct: 563 GVGKTLLAKALAEFMFGD 580
>gi|402570803|ref|YP_006620146.1| chaperone ATPase [Desulfosporosinus meridiei DSM 13257]
gi|402252000|gb|AFQ42275.1| ATPase with chaperone activity, ATP-binding subunit
[Desulfosporosinus meridiei DSM 13257]
Length = 813
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 257/621 (41%), Positives = 356/621 (57%), Gaps = 72/621 (11%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAR----- 138
R+TERA K + +Q EAK +G +V T+H+LLGLI E +G+ +D A+
Sbjct: 4 RYTERAQKVLAIAQEEAKRMGHQVVGTEHVLLGLIQEGEGIAAQALTGMNLDLAKILSQI 63
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E + + + + + F+ KRV E A E + + N+I EH
Sbjct: 64 EQITGVGQAIKGE-----------------VGFTPRVKRVLELANEEAHRQEVNYIGTEH 106
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A R+L L V + L GE E P +S
Sbjct: 107 LLLGLIMEGEGIAARILANLNVSPERVWKQVAKLLGGEF-DEAAIP----------VSNS 155
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A K+ G AL +F DLT +A E +DPVIGRE EI+R+IQ+L RRTKNNP L+G
Sbjct: 156 VPASKNAGSVTTPALNEFGRDLTLQAREGRLDPVIGREKEIERVIQVLSRRTKNNPALIG 215
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTAIAEGLA IV VP L++KR+++LD+ ++AG+K RGE E R+ ++ EI
Sbjct: 216 EPGVGKTAIAEGLAQGIVNNRVPEILVNKRVITLDLSAMVAGSKYRGEFEERLKKVMEEI 275
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ G++ILFIDE+HTLIG+G +D +N+LKP+L RGELQCI +TT +E+R
Sbjct: 276 RADGNIILFIDELHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLEEYRKY 330
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E+A+ IL GLR++YEAHH K T E+I AA LS RYIS
Sbjct: 331 IEKDSALERRFQPISVGEPTVEEAIIILRGLRDRYEAHHRVKITDESIEAAARLSDRYIS 390
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF--------------KRKKEQQTCILSKPPDDYWQEI 544
DR+LPDKAIDL+DEA SR + F + KKE++ + S QE
Sbjct: 391 DRFLPDKAIDLMDEAASRVRLASFTAPPDLKLLEEEAERLKKEKEAAVSS-------QEF 443
Query: 545 RTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLW 604
+ + Q R +E+ + E A+V DDIA + + W
Sbjct: 444 EKAAGLRDQEQKLR-------------AELAEQRGAWEHQRYKENAMVTGDDIAQIVASW 490
Query: 605 SGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664
+GIPV+++ +E L+ LE+ L +R+IGQ++AV A++RAV+R+R GLKDP RP + +F
Sbjct: 491 TGIPVKKLAEEESERLLHLEDLLHQRLIGQEDAVTAVARAVRRARAGLKDPKRPIGSFIF 550
Query: 665 CGPTGVGKTELAKSLAACYFG 685
GPTGVGKTEL ++LA FG
Sbjct: 551 LGPTGVGKTELGRALAEGMFG 571
>gi|296166661|ref|ZP_06849087.1| ATP-dependent protease, ATPase subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295897996|gb|EFG77576.1| ATP-dependent protease, ATPase subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 844
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 250/613 (40%), Positives = 359/613 (58%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGQVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH + A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSISDAALVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDREKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EAETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
>gi|400975586|ref|ZP_10802817.1| ATP-dependent Clp protease, ATP-binding subunit [Salinibacterium
sp. PAMC 21357]
Length = 825
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 254/617 (41%), Positives = 362/617 (58%), Gaps = 63/617 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EAK L + + T+H+LLGLI E LES GI++D R
Sbjct: 1 MFERFTDRARRVVVLAQEEAKMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDSVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V I Q T +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 EQVQDIIGQGQQQPT-------------GHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG D+N + + L KE ++ G
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGADLNKVRQQVIQLLGSFQGKEA-----------VAVGGN 156
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
A +P + + L+QF +LT A + +DPVIGRE E++R++QIL RR+KNNP+L+G
Sbjct: 157 DA---TPDKG-SQVLDQFGRNLTQAARDGKLDPVIGREKEMERVMQILSRRSKNNPVLIG 212
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLAI IV +VP L K++ SLD+G L+AG++ RG+ E R+ + EI
Sbjct: 213 EPGVGKTAVVEGLAIAIVNGDVPETLKDKQLYSLDLGSLIAGSRYRGDFEERLKKVTKEI 272
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+ GD+I+FIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 273 RTRGDIIVFIDEIHTLVGAGAA-----EGAIDAASILKPLLARGELQTIGATTLDEYRKH 327
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
FEKD AL RRFQ V + EP+ + IL GLR++YE+ H T AI AA +L+ RY++
Sbjct: 328 FEKDAALERRFQSVQVHEPNLPHTINILKGLRDRYESFHKVSITDGAIVAAANLADRYVA 387
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-----DDYWQEIRTVQAMHEV 553
DR+LPDKAIDL+DEAG+R + ILS PP DD E+R +
Sbjct: 388 DRFLPDKAIDLLDEAGARLRL-----------SILSAPPELREFDDKIAEVRGQK----- 431
Query: 554 VQGSRLKYD-DVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGI 607
+G+ D + AS+ D + ++ L + D +V IA V + +GI
Sbjct: 432 -EGAIEDQDFEKAASLRDEEKKLLGERLRLEKQWKSGDVGASGIVDEGLIAEVLAAATGI 490
Query: 608 PVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGP 667
PV ++T +E L+ +E+ L RVIGQ+EAV+ +S+ ++R+R GLKDPNRP+ + +F GP
Sbjct: 491 PVFKLTEEESSRLIFMEKALHMRVIGQEEAVSVLSKTIRRTRAGLKDPNRPSGSFIFAGP 550
Query: 668 TGVGKTELAKSLAACYF 684
TGVGKTELAK+LA F
Sbjct: 551 TGVGKTELAKALAEFLF 567
>gi|154508516|ref|ZP_02044158.1| hypothetical protein ACTODO_01017 [Actinomyces odontolyticus ATCC
17982]
gi|153798150|gb|EDN80570.1| ATPase family associated with various cellular activities (AAA)
[Actinomyces odontolyticus ATCC 17982]
Length = 826
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 264/621 (42%), Positives = 364/621 (58%), Gaps = 58/621 (9%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKA 137
+FERFT+RA + V+ +Q EA+ L + + T+HLLLGLI+E I +
Sbjct: 4 GMFERFTDRARRVVVLAQDEARGLKHNYIGTEHLLLGLISEGEGVAAKALETMEIKGEAV 63
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R +V+ I KP +PF+ KRVFE ++ + G+N+I E
Sbjct: 64 RASVIEIIGEGE-----------KPVE--GHIPFTPRAKRVFELSLREALQLGHNYIGTE 110
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG--ELAKEGREPSLAKGVRENSI 255
H+ LGL +G A +VL + G D+ + + L G EGRE A
Sbjct: 111 HLLLGLLKEGEGVAAQVLTKQGADLAQVRQTVIQMLSGYQRGDDEGRESVGAG------- 163
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
P R+ ++ LEQF +LT A E +DPVIGR E++R++Q+L RRTKNNP+
Sbjct: 164 ---VGGSGGPERSNSAILEQFGRNLTQAARENKLDPVIGRRVEMERVMQVLSRRTKNNPV 220
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTA+ EGLA IV +VP + K+I SLDMG L+AG++ RG+ E R+ ++
Sbjct: 221 LIGEPGVGKTAVVEGLAQAIVHGDVPETIKDKQIYSLDMGSLVAGSRYRGDFEERLKKVL 280
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+ GD+ILFIDE+HTL+G+G +G+ +D + +LKP L RGELQ I +TT DE+
Sbjct: 281 KEIRTRGDIILFIDEIHTLVGAGAA----EGS-IDAAQMLKPMLARGELQTIGATTNDEY 335
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EPS ++ V IL GLR++YEAHH T AI AA L+ R
Sbjct: 336 RKYIEKDAALERRFQPVKVEEPSVDETVEILKGLRDRYEAHHRVIITDAAIQAAAELADR 395
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVV 554
YISDR+LPDKAIDLVDEAG+R I ++ PP E+R + + + EV
Sbjct: 396 YISDRFLPDKAIDLVDEAGARLRIRR-----------MTAPP-----ELREIDEKIAEVR 439
Query: 555 QGSRLKYDDV----VASMGD-----TSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWS 605
+ DD AS+ D E + + DE A VG +IA V ++ +
Sbjct: 440 RNKEAAIDDQDFEKAASLRDEESKLNEERKAKEEAWKGGESDEIAEVGDQEIAEVLAMST 499
Query: 606 GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFC 665
GIPV ++T E L+ +E++L KRVIGQDEAV A++++++R+R GLKDPNRP + +F
Sbjct: 500 GIPVVRLTQTETAKLLKMEDELHKRVIGQDEAVKALAQSIRRTRSGLKDPNRPGGSFIFA 559
Query: 666 GPTGVGKTELAKSLAACYFGS 686
GPTGVGKTELAK+LA FG
Sbjct: 560 GPTGVGKTELAKALAEFLFGD 580
>gi|373454701|ref|ZP_09546565.1| hypothetical protein HMPREF9453_00734 [Dialister succinatiphilus
YIT 11850]
gi|371935564|gb|EHO63309.1| hypothetical protein HMPREF9453_00734 [Dialister succinatiphilus
YIT 11850]
Length = 806
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 255/623 (40%), Positives = 361/623 (57%), Gaps = 61/623 (9%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAREA 140
+RFT+ A F+ EA LG D + T+HLLLG+ E G L S G+T+D A E
Sbjct: 3 DRFTDGVKNAWKFAASEAAKLGSDYIGTEHLLLGIAHEKDSAGGRILNSLGVTVD-AVEQ 61
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
++S + +QG+ S ++ + TKRV E AVE + G +++ EH+
Sbjct: 62 LLSQY------------SQGRSLFSTGEVYAAPRTKRVLEMAVEEANELGNSYVGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
L + G A R+L+ GV + L + + K + E+S GK+
Sbjct: 110 LAILHEGGGLAVRILESFGVTQDKL-----------------QKAFEKVLSEDS--GKSD 150
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
S G L+ F VDL +A + IDPVIGR EI R+IQIL RR KNNP+L+GE
Sbjct: 151 KSVSLGD-----LDGFAVDLNEKAKQGKIDPVIGRNDEINRVIQILSRRNKNNPVLIGEP 205
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RIV +VP L + I+SL+M ++AG K RGE E R+ +I E++K
Sbjct: 206 GVGKTAIAEGLAQRIVNNDVPEILKNCHIISLNMSSVVAGTKYRGEFEERLKKVIDEVKK 265
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
D ILF+DE+HTL+G+G+ ++G+ +D +N++KP+L RGEL+CI +TT E++ E
Sbjct: 266 HKDWILFVDELHTLVGAGS----SEGS-MDAANIMKPALARGELRCIGATTLKEYKKYIE 320
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EP+ +D + IL GLR++YEA H K T EA+ AAV LS RYI+DR
Sbjct: 321 KDAALERRFQPVKVGEPTPKDTLEILKGLRDRYEAFHKAKITDEALKAAVELSGRYITDR 380
Query: 501 YLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
+ PDKAID++DEA ++ +E +KKE+ ++K + +A Q
Sbjct: 381 FQPDKAIDVIDEAAAKVRMEASSTPEGLKKKEEALESVNKEKEAAVSAQDFEKAAIYRDQ 440
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITAD 615
+L+ +EI D D V +D+A V S W+G+PVQ +
Sbjct: 441 AKKLQ-----------TEIDTLKKDWKGGDHDHLTVT-EEDVAEVVSKWTGVPVQNLKKS 488
Query: 616 ERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675
+ L+ LE++L KRVIGQDEAV A++ A++R+R G+KDP RP + LF G TGVGKTEL
Sbjct: 489 DSERLLHLEDELHKRVIGQDEAVHAVATAIRRARAGMKDPKRPIGSFLFLGTTGVGKTEL 548
Query: 676 AKSLAACYFGSVRIHYLFFPSPF 698
A++LA C FGS + F S +
Sbjct: 549 ARALAECMFGSEKNMIRFDMSEY 571
>gi|406830128|ref|ZP_11089722.1| ATPase AAA [Schlesneria paludicola DSM 18645]
Length = 838
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 243/615 (39%), Positives = 361/615 (58%), Gaps = 47/615 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID--KAR 138
++ERFT+RA K + + +EA+ + + T+H+LLGL+ E + + +D K R
Sbjct: 1 MYERFTDRARKVMQLANQEAQRFNHEYIGTEHILLGLVKEGSGVAANVLKNLEVDLRKIR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I S G + K+P + K+V E A+E +R+ +N++ EH
Sbjct: 61 LEVEKIVQS------------GPDMVTMGKLPQTPRAKKVVEYAMEEARNLNHNYVGTEH 108
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
+ LGL +G A +VL LG+ + + ++ L + G S G + SGK
Sbjct: 109 LLLGLIREQEGVAAQVLMNLGLKLEDVREEVLNLLGHGVEGAGEGSSERAGSGQAGPSGK 168
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
T K+P AL+ F DLT A + +DPVIGR EI+R+IQILCRR KNNP+LLG
Sbjct: 169 TPKSKTP------ALDSFGRDLTELARQTKLDPVIGRSNEIERVIQILCRRQKNNPVLLG 222
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E+GVGKTAI EG A +V EVP L KRI+ LD+ +++AG K RG+ E R+ +++E+
Sbjct: 223 EAGVGKTAIVEGFAQMVVNGEVPELLRDKRIVVLDLAMMVAGTKYRGQFEERIKAVMNEV 282
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++ + ILFIDE+HTL+G+G G +G +D SN+LKP+L RGE+QCI +TT DE+R
Sbjct: 283 KRAKNTILFIDELHTLVGAG----GAEG-AIDASNVLKPALSRGEIQCIGATTLDEYRKY 337
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQ V++ PS + IL GLR++YE HH + T +A+ AV LS RYI+
Sbjct: 338 IEKDGALERRFQTVIVEPPSPAQTIEILKGLRDRYEQHHRVQITDDALAKAVELSTRYIT 397
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD--DYWQEI-RTVQAMHEVVQ 555
R LPDKAID++DE+G+R ++ R PPD + +E+ R A E V
Sbjct: 398 ARCLPDKAIDVIDESGARIRLKSMVR-----------PPDLKELEEEVERLNTAKEEAVA 446
Query: 556 GSRLKYDDVVASMGDTSEIVVESSLPSASD-----DDEPAVVGPDDIAAVASLWSGIPVQ 610
+ AS+ D ++ + + D ++ VV + IA V + +GIP+
Sbjct: 447 NQDFEK---AASLRDQADKLKKKKENINKDWREKSKEKEGVVDAEVIAEVVAKMTGIPLT 503
Query: 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670
++++++ + L+ +EE+L +RV+ Q+EA+ +++ V+RSR GLKDP RPT LF GPTGV
Sbjct: 504 RLSSEDAVRLLKMEEELHRRVVSQNEAIKQVAKCVRRSRSGLKDPRRPTGVFLFAGPTGV 563
Query: 671 GKTELAKSLAACYFG 685
GKT AK+LA FG
Sbjct: 564 GKTLTAKTLAEFMFG 578
>gi|392418483|ref|YP_006455088.1| ATPase with chaperone activity, ATP-binding subunit [Mycobacterium
chubuense NBB4]
gi|390618259|gb|AFM19409.1| ATPase with chaperone activity, ATP-binding subunit [Mycobacterium
chubuense NBB4]
Length = 847
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 253/613 (41%), Positives = 364/613 (59%), Gaps = 47/613 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E G+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKE---------TAEAGSGGR 158
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+P + + L+QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 159 GGEAGNP--STSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV +VP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGDVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA----EGA-IDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ + IL GLR++YEAHH T AI AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVAHTIEILKGLRDRYEAHHRVSITDGAIAAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558
DR+LPDKAIDL+DEAG+R I ++ PPD + + A E
Sbjct: 392 DRFLPDKAIDLIDEAGARMRIRR-----------MTAPPDLREFDEKIADARREKESAID 440
Query: 559 LKYDDVVASMGDTSEIVVESSLP-----SASDDDEPAVVGPDDIAAVASLWSGIPVQQIT 613
+ + AS+ D + +V + D D A V + IA V W+GIPV ++T
Sbjct: 441 AQDFEKAASLRDKEKQLVAQRAEREKQWRSGDLDVVAEVDDEQIAEVLGNWTGIPVFKLT 500
Query: 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673
+E L+ +E++L KR+IGQ++AV A+S+A++R+R GLKDP RP+ + +F GP+GVGKT
Sbjct: 501 EEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT 560
Query: 674 ELAKSLAACYFGS 686
EL+K+LA FG
Sbjct: 561 ELSKALANFLFGD 573
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,653,810,306
Number of Sequences: 23463169
Number of extensions: 445392284
Number of successful extensions: 1720433
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 12546
Number of HSP's successfully gapped in prelim test: 2198
Number of HSP's that attempted gapping in prelim test: 1645864
Number of HSP's gapped (non-prelim): 37188
length of query: 710
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 560
effective length of database: 8,839,720,017
effective search space: 4950243209520
effective search space used: 4950243209520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)