Query 005179
Match_columns 710
No_of_seqs 556 out of 3925
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 19:21:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 1.1E-98 2E-103 842.7 54.4 569 84-709 1-570 (786)
2 CHL00095 clpC Clp protease ATP 100.0 9.1E-83 2E-87 752.3 57.6 586 81-709 1-588 (821)
3 TIGR03345 VI_ClpV1 type VI sec 100.0 1.2E-80 2.6E-85 729.4 55.0 593 85-709 1-645 (852)
4 TIGR02639 ClpA ATP-dependent C 100.0 5.5E-79 1.2E-83 712.8 55.9 529 85-709 1-530 (731)
5 TIGR03346 chaperone_ClpB ATP-d 100.0 2.6E-78 5.7E-83 715.9 55.2 584 85-709 1-644 (852)
6 PRK10865 protein disaggregatio 100.0 7.1E-78 1.5E-82 708.6 52.8 589 80-709 1-647 (857)
7 PRK11034 clpA ATP-dependent Cl 100.0 6.9E-75 1.5E-79 667.7 53.4 533 85-709 2-534 (758)
8 KOG1051 Chaperone HSP104 and r 100.0 4.6E-74 9.9E-79 651.8 44.0 587 77-709 4-637 (898)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 1.5E-37 3.4E-42 331.1 19.8 358 287-698 187-581 (802)
10 KOG0730 AAA+-type ATPase [Post 100.0 6.7E-31 1.4E-35 285.1 21.0 280 308-695 215-501 (693)
11 TIGR01243 CDC48 AAA family ATP 99.9 1.6E-26 3.5E-31 272.0 25.4 320 287-698 175-523 (733)
12 KOG0735 AAA+-type ATPase [Post 99.9 1.4E-25 3.1E-30 243.3 18.2 295 309-697 429-736 (952)
13 KOG0736 Peroxisome assembly fa 99.9 1.6E-24 3.5E-29 237.5 24.2 298 291-682 402-728 (953)
14 COG1222 RPT1 ATP-dependent 26S 99.9 1.7E-22 3.8E-27 205.7 17.4 199 287-515 148-370 (406)
15 KOG0741 AAA+-type ATPase [Post 99.9 2.2E-21 4.7E-26 204.9 18.9 311 306-702 251-585 (744)
16 COG2256 MGS1 ATPase related to 99.9 2.8E-21 6.1E-26 200.1 15.6 197 278-515 12-218 (436)
17 COG1223 Predicted ATPase (AAA+ 99.9 1.1E-20 2.5E-25 183.7 16.0 194 282-498 113-320 (368)
18 KOG0730 AAA+-type ATPase [Post 99.8 8.1E-20 1.8E-24 199.3 21.1 200 287-516 431-651 (693)
19 KOG0738 AAA+-type ATPase [Post 99.8 2.5E-19 5.3E-24 183.7 20.8 203 285-515 207-430 (491)
20 CHL00195 ycf46 Ycf46; Provisio 99.8 9.9E-19 2.2E-23 193.6 22.4 202 287-514 225-441 (489)
21 KOG0736 Peroxisome assembly fa 99.8 9.7E-19 2.1E-23 192.5 21.5 202 287-515 669-893 (953)
22 PF05496 RuvB_N: Holliday junc 99.8 6.3E-20 1.4E-24 179.0 10.8 189 278-514 12-226 (233)
23 KOG0733 Nuclear AAA ATPase (VC 99.8 8.1E-19 1.7E-23 188.6 19.9 199 288-514 509-730 (802)
24 PRK03992 proteasome-activating 99.8 5.4E-18 1.2E-22 185.0 20.4 198 288-515 129-350 (389)
25 KOG0734 AAA+-type ATPase conta 99.8 2.1E-18 4.6E-23 182.6 13.4 203 286-520 300-524 (752)
26 KOG2028 ATPase related to the 99.8 4.9E-18 1.1E-22 172.5 15.3 187 278-496 126-329 (554)
27 PTZ00454 26S protease regulato 99.8 1.5E-17 3.2E-22 180.6 19.0 200 287-515 142-364 (398)
28 PRK14956 DNA polymerase III su 99.8 1.2E-17 2.7E-22 181.8 18.1 202 278-515 6-228 (484)
29 KOG0739 AAA+-type ATPase [Post 99.8 3.5E-18 7.6E-23 169.4 12.2 190 287-499 130-337 (439)
30 TIGR02881 spore_V_K stage V sp 99.8 3.4E-17 7.5E-22 169.7 19.6 213 288-517 4-238 (261)
31 TIGR01241 FtsH_fam ATP-depende 99.7 3.4E-17 7.3E-22 184.9 19.5 202 287-515 52-273 (495)
32 PTZ00361 26 proteosome regulat 99.7 2.7E-17 5.9E-22 179.5 17.9 201 285-515 178-402 (438)
33 PRK13342 recombination factor 99.7 2.4E-17 5.2E-22 181.9 17.6 194 279-515 1-202 (413)
34 TIGR01243 CDC48 AAA family ATP 99.7 1.1E-16 2.5E-21 188.7 23.4 199 288-515 451-670 (733)
35 KOG0989 Replication factor C, 99.7 1.8E-17 3.9E-22 166.1 13.6 205 277-514 23-235 (346)
36 TIGR02639 ClpA ATP-dependent C 99.7 4.4E-16 9.5E-21 183.2 27.7 177 291-492 455-689 (731)
37 PRK07003 DNA polymerase III su 99.7 2.9E-17 6.2E-22 184.8 16.4 201 279-515 5-226 (830)
38 COG0464 SpoVK ATPases of the A 99.7 1.8E-16 4E-21 179.4 23.2 289 303-700 10-314 (494)
39 COG2255 RuvB Holliday junction 99.7 2E-16 4.3E-21 157.0 20.2 191 279-517 15-231 (332)
40 COG0542 clpA ATP-binding subun 99.7 4.8E-16 1E-20 176.6 25.6 181 291-493 492-733 (786)
41 CHL00176 ftsH cell division pr 99.7 1.1E-16 2.4E-21 182.8 20.5 202 287-515 180-401 (638)
42 PRK12323 DNA polymerase III su 99.7 4.3E-17 9.4E-22 181.4 16.2 201 279-515 5-231 (700)
43 CHL00181 cbbX CbbX; Provisiona 99.7 3.1E-16 6.7E-21 163.7 20.6 210 291-516 24-253 (287)
44 PLN00020 ribulose bisphosphate 99.7 1.2E-16 2.7E-21 166.0 16.3 158 309-492 146-327 (413)
45 KOG0735 AAA+-type ATPase [Post 99.7 1.1E-16 2.3E-21 175.0 16.2 198 288-514 665-882 (952)
46 KOG0731 AAA+-type ATPase conta 99.7 1.4E-16 3.1E-21 179.4 17.7 201 287-514 308-530 (774)
47 TIGR03689 pup_AAA proteasome A 99.7 1.1E-16 2.4E-21 177.0 15.9 180 284-471 176-379 (512)
48 KOG0740 AAA+-type ATPase [Post 99.7 3.4E-16 7.4E-21 166.9 19.0 204 283-514 146-368 (428)
49 PRK00080 ruvB Holliday junctio 99.7 7.5E-16 1.6E-20 165.1 21.7 186 281-514 16-227 (328)
50 TIGR00635 ruvB Holliday juncti 99.7 1.1E-15 2.4E-20 162.4 22.4 179 288-514 2-206 (305)
51 TIGR01242 26Sp45 26S proteasom 99.7 3.5E-16 7.6E-21 170.0 18.7 199 287-515 119-341 (364)
52 PRK14949 DNA polymerase III su 99.7 2.7E-16 5.8E-21 180.4 18.0 202 278-515 4-226 (944)
53 PRK14960 DNA polymerase III su 99.7 2.6E-16 5.7E-21 175.6 17.3 201 279-515 4-225 (702)
54 PRK13341 recombination factor 99.7 2.6E-16 5.6E-21 181.9 17.5 200 279-515 17-223 (725)
55 TIGR02880 cbbX_cfxQ probable R 99.7 2.1E-15 4.5E-20 157.7 21.9 188 291-494 23-228 (284)
56 PRK07994 DNA polymerase III su 99.7 3.7E-16 8E-21 177.1 17.0 200 279-514 5-225 (647)
57 COG0464 SpoVK ATPases of the A 99.7 6.2E-16 1.4E-20 175.1 18.7 202 287-516 239-461 (494)
58 PRK11034 clpA ATP-dependent Cl 99.7 5.8E-15 1.3E-19 171.6 26.6 177 291-492 459-693 (758)
59 PRK14962 DNA polymerase III su 99.7 5.8E-16 1.3E-20 171.6 17.4 201 279-515 3-224 (472)
60 KOG0728 26S proteasome regulat 99.7 2.7E-16 5.8E-21 152.5 12.2 177 285-480 142-341 (404)
61 PRK14958 DNA polymerase III su 99.7 9.6E-16 2.1E-20 171.7 17.3 202 279-516 5-227 (509)
62 PRK14964 DNA polymerase III su 99.7 1.1E-15 2.4E-20 168.5 17.4 202 279-516 2-224 (491)
63 CHL00095 clpC Clp protease ATP 99.7 2.3E-14 4.9E-19 170.7 29.7 181 290-492 509-759 (821)
64 PLN03025 replication factor C 99.7 4.2E-16 9E-21 166.3 13.2 196 279-511 2-202 (319)
65 KOG0727 26S proteasome regulat 99.7 3.7E-16 8E-21 151.7 11.4 149 306-473 184-342 (408)
66 KOG0737 AAA+-type ATPase [Post 99.7 7.9E-16 1.7E-20 158.4 14.4 183 288-498 90-297 (386)
67 PRK14961 DNA polymerase III su 99.7 2.1E-15 4.5E-20 163.5 17.8 202 278-515 4-226 (363)
68 PRK14952 DNA polymerase III su 99.7 2.3E-15 5E-20 169.9 18.5 199 280-514 3-224 (584)
69 PRK14957 DNA polymerase III su 99.7 2.5E-15 5.4E-20 168.1 17.8 200 279-514 5-225 (546)
70 CHL00206 ycf2 Ycf2; Provisiona 99.7 1.5E-15 3.2E-20 182.4 16.9 177 309-517 1628-1857(2281)
71 PRK14951 DNA polymerase III su 99.6 2.2E-15 4.8E-20 170.5 17.0 201 279-515 5-231 (618)
72 PRK07764 DNA polymerase III su 99.6 2.4E-15 5.3E-20 175.9 17.9 200 279-514 4-226 (824)
73 KOG0652 26S proteasome regulat 99.6 1.1E-15 2.3E-20 149.1 10.7 187 288-498 169-378 (424)
74 PRK06645 DNA polymerase III su 99.6 4.9E-15 1.1E-19 164.8 17.0 203 278-516 9-236 (507)
75 TIGR02902 spore_lonB ATP-depen 99.6 3.2E-15 7E-20 169.1 15.7 213 277-517 52-312 (531)
76 COG0465 HflB ATP-dependent Zn 99.6 2.4E-15 5.1E-20 167.0 14.2 201 287-517 147-370 (596)
77 PRK08691 DNA polymerase III su 99.6 4.3E-15 9.2E-20 167.6 16.3 202 279-516 5-227 (709)
78 PRK14959 DNA polymerase III su 99.6 6.8E-15 1.5E-19 165.4 17.4 199 279-513 5-224 (624)
79 TIGR03346 chaperone_ClpB ATP-d 99.6 1.9E-13 4.1E-18 163.3 28.2 181 290-492 565-803 (852)
80 KOG0726 26S proteasome regulat 99.6 5.7E-16 1.2E-20 153.3 5.5 166 287-471 182-370 (440)
81 PRK12402 replication factor C 99.6 2.2E-14 4.7E-19 154.7 18.0 190 279-495 4-218 (337)
82 PRK05896 DNA polymerase III su 99.6 1.7E-14 3.8E-19 161.3 17.4 187 279-495 5-212 (605)
83 PRK14969 DNA polymerase III su 99.6 9.3E-15 2E-19 164.8 15.1 201 279-515 5-226 (527)
84 PRK08084 DNA replication initi 99.6 2.2E-14 4.8E-19 146.1 16.5 177 289-496 21-202 (235)
85 PRK14963 DNA polymerase III su 99.6 1.6E-14 3.4E-19 161.5 16.8 199 280-514 4-222 (504)
86 PRK08451 DNA polymerase III su 99.6 2.1E-14 4.6E-19 159.8 17.5 202 279-516 3-225 (535)
87 PHA02544 44 clamp loader, smal 99.6 1.4E-14 3E-19 154.7 15.5 184 279-494 10-200 (316)
88 PRK05563 DNA polymerase III su 99.6 2.9E-14 6.4E-19 161.9 17.8 201 279-515 5-226 (559)
89 PRK04195 replication factor C 99.6 1.1E-14 2.3E-19 164.0 14.1 182 279-496 3-195 (482)
90 PRK09111 DNA polymerase III su 99.6 3E-14 6.6E-19 161.8 17.8 202 278-515 12-239 (598)
91 PRK07133 DNA polymerase III su 99.6 3.7E-14 8E-19 161.7 18.2 201 278-514 6-224 (725)
92 KOG0729 26S proteasome regulat 99.6 4.3E-15 9.3E-20 145.3 8.9 165 288-471 175-362 (435)
93 PRK10733 hflB ATP-dependent me 99.6 2.7E-14 5.8E-19 165.2 16.6 203 289-518 151-373 (644)
94 KOG0991 Replication factor C, 99.6 7.6E-15 1.7E-19 141.2 9.6 196 269-497 6-208 (333)
95 PRK14965 DNA polymerase III su 99.6 3.3E-14 7.2E-19 162.2 16.4 200 279-514 5-225 (576)
96 PRK06647 DNA polymerase III su 99.6 8.4E-14 1.8E-18 157.5 18.6 200 279-514 5-225 (563)
97 KOG0732 AAA+-type ATPase conta 99.6 7.6E-14 1.7E-18 161.5 18.1 205 287-514 262-486 (1080)
98 TIGR02397 dnaX_nterm DNA polym 99.6 1E-13 2.2E-18 150.6 17.8 201 279-515 3-224 (355)
99 PF00004 AAA: ATPase family as 99.6 2.7E-14 5.8E-19 131.7 11.3 123 314-455 1-131 (132)
100 PRK14086 dnaA chromosomal repl 99.6 1E-13 2.2E-18 155.2 18.1 163 312-496 315-481 (617)
101 PRK14955 DNA polymerase III su 99.5 8.7E-14 1.9E-18 152.6 16.3 201 279-515 5-234 (397)
102 PRK06305 DNA polymerase III su 99.5 1.9E-13 4E-18 151.6 18.5 200 279-514 6-227 (451)
103 PRK05642 DNA replication initi 99.5 1.9E-13 4.2E-18 139.0 16.8 154 311-496 45-201 (234)
104 COG2812 DnaX DNA polymerase II 99.5 5.4E-14 1.2E-18 154.6 13.6 202 279-516 5-227 (515)
105 PRK14953 DNA polymerase III su 99.5 1.7E-13 3.7E-18 152.8 17.6 201 279-515 5-226 (486)
106 PRK12422 chromosomal replicati 99.5 1.6E-13 3.5E-18 151.5 16.7 185 287-495 108-305 (445)
107 PRK00149 dnaA chromosomal repl 99.5 3.2E-13 7E-18 150.9 18.8 186 288-495 120-314 (450)
108 PRK14970 DNA polymerase III su 99.5 2.5E-13 5.4E-18 148.1 17.1 200 279-514 6-214 (367)
109 TIGR00362 DnaA chromosomal rep 99.5 4.3E-13 9.3E-18 148.1 18.7 186 288-495 108-302 (405)
110 PRK14954 DNA polymerase III su 99.5 3.5E-13 7.5E-18 153.4 18.3 188 279-496 5-221 (620)
111 TIGR00763 lon ATP-dependent pr 99.5 1.7E-13 3.6E-18 162.4 15.8 180 291-495 321-536 (775)
112 PRK06893 DNA replication initi 99.5 2.5E-13 5.5E-18 137.8 14.9 179 286-496 12-196 (229)
113 PRK00440 rfc replication facto 99.5 2.6E-13 5.7E-18 145.1 15.8 200 279-515 6-209 (319)
114 PRK14948 DNA polymerase III su 99.5 3.7E-13 8E-18 154.0 17.7 188 278-495 4-214 (620)
115 TIGR02928 orc1/cdc6 family rep 99.5 1.4E-12 3.1E-17 142.2 21.1 209 290-516 15-253 (365)
116 PRK14088 dnaA chromosomal repl 99.5 6.8E-13 1.5E-17 146.9 18.6 186 288-496 103-298 (440)
117 TIGR02903 spore_lon_C ATP-depe 99.5 7.1E-13 1.5E-17 152.3 18.8 211 278-516 142-401 (615)
118 PF00308 Bac_DnaA: Bacterial d 99.5 2.6E-13 5.7E-18 136.4 13.2 185 288-496 6-201 (219)
119 PTZ00112 origin recognition co 99.5 1E-12 2.3E-17 148.7 19.0 209 290-516 755-988 (1164)
120 PRK14950 DNA polymerase III su 99.5 6.1E-13 1.3E-17 152.6 17.6 187 279-495 5-213 (585)
121 PRK08727 hypothetical protein; 99.5 8.6E-13 1.9E-17 134.2 16.5 177 288-496 17-197 (233)
122 KOG0651 26S proteasome regulat 99.5 7.9E-14 1.7E-18 139.8 8.6 166 287-471 129-317 (388)
123 PRK14971 DNA polymerase III su 99.5 6E-13 1.3E-17 152.3 17.0 200 279-514 6-227 (614)
124 PRK00411 cdc6 cell division co 99.5 6.6E-12 1.4E-16 138.4 24.1 207 290-516 30-261 (394)
125 PRK14087 dnaA chromosomal repl 99.5 1E-12 2.2E-17 145.7 17.0 190 287-496 112-312 (450)
126 KOG0742 AAA+-type ATPase [Post 99.4 3.1E-12 6.8E-17 132.3 17.2 191 267-476 327-534 (630)
127 COG0593 DnaA ATPase involved i 99.4 4.8E-12 1E-16 135.5 17.1 163 311-497 113-280 (408)
128 PRK07940 DNA polymerase III su 99.4 1.9E-12 4.1E-17 140.5 14.2 174 288-496 3-206 (394)
129 TIGR02640 gas_vesic_GvpN gas v 99.4 4.4E-12 9.5E-17 131.4 16.3 163 299-497 11-216 (262)
130 TIGR03420 DnaA_homol_Hda DnaA 99.4 7.5E-12 1.6E-16 127.0 17.7 188 289-514 14-206 (226)
131 CHL00195 ycf46 Ycf46; Provisio 99.4 9.4E-12 2E-16 138.3 19.3 96 383-496 82-177 (489)
132 PRK05342 clpX ATP-dependent pr 99.4 1E-11 2.2E-16 135.4 17.7 191 292-493 73-357 (412)
133 PRK08903 DnaA regulatory inact 99.4 7.6E-12 1.6E-16 127.1 15.1 171 287-495 15-191 (227)
134 KOG2004 Mitochondrial ATP-depe 99.4 4.4E-12 9.6E-17 139.6 13.8 188 290-502 411-634 (906)
135 COG0466 Lon ATP-dependent Lon 99.4 5.5E-12 1.2E-16 139.9 14.5 199 291-514 324-558 (782)
136 PF05673 DUF815: Protein of un 99.4 3.2E-11 7E-16 119.9 18.2 166 288-487 25-220 (249)
137 PRK05201 hslU ATP-dependent pr 99.4 2.3E-11 5E-16 130.0 18.3 112 382-495 249-382 (443)
138 TIGR00390 hslU ATP-dependent p 99.4 2.1E-11 4.4E-16 130.3 17.6 112 382-495 247-380 (441)
139 PRK09087 hypothetical protein; 99.4 1.3E-11 2.9E-16 124.6 15.3 142 313-498 46-190 (226)
140 KOG0744 AAA+-type ATPase [Post 99.3 4.5E-12 9.8E-17 127.9 11.0 152 314-473 180-343 (423)
141 PRK06620 hypothetical protein; 99.3 1.2E-11 2.5E-16 123.9 13.2 135 312-496 45-182 (214)
142 PRK09112 DNA polymerase III su 99.3 2.7E-11 5.8E-16 129.9 16.2 200 284-513 17-244 (351)
143 PRK13407 bchI magnesium chelat 99.3 2.9E-11 6.2E-16 128.2 16.0 160 288-469 6-215 (334)
144 PRK10787 DNA-binding ATP-depen 99.3 1.7E-11 3.6E-16 144.0 15.0 176 291-492 323-534 (784)
145 COG1474 CDC6 Cdc6-related prot 99.3 1.1E-10 2.4E-15 125.5 20.1 208 291-520 18-248 (366)
146 CHL00081 chlI Mg-protoporyphyr 99.3 8.7E-11 1.9E-15 124.7 17.6 165 288-469 15-231 (350)
147 TIGR02030 BchI-ChlI magnesium 99.3 7.5E-11 1.6E-15 125.4 16.4 163 289-468 3-217 (337)
148 PRK13531 regulatory ATPase Rav 99.3 1.9E-10 4.1E-15 125.5 19.5 152 291-468 21-192 (498)
149 PRK07471 DNA polymerase III su 99.3 5.1E-11 1.1E-15 128.4 14.9 196 284-511 13-240 (365)
150 KOG0743 AAA+-type ATPase [Post 99.3 1.3E-10 2.9E-15 123.4 17.5 136 308-468 232-381 (457)
151 TIGR00602 rad24 checkpoint pro 99.3 8.1E-11 1.7E-15 134.0 17.0 222 278-515 72-329 (637)
152 KOG2035 Replication factor C, 99.3 7.5E-11 1.6E-15 116.9 13.4 193 280-498 3-223 (351)
153 TIGR00382 clpX endopeptidase C 99.2 1.4E-10 3E-15 125.9 16.7 191 292-493 79-363 (413)
154 TIGR03345 VI_ClpV1 type VI sec 99.2 1.9E-10 4.2E-15 136.7 18.7 182 291-494 567-810 (852)
155 TIGR01650 PD_CobS cobaltochela 99.2 7.6E-11 1.6E-15 123.2 13.4 172 293-494 48-253 (327)
156 PF05621 TniB: Bacterial TniB 99.2 4.6E-10 9.9E-15 115.2 17.5 211 292-516 36-268 (302)
157 COG5271 MDN1 AAA ATPase contai 99.2 4.6E-10 1E-14 131.2 18.6 146 299-471 1533-1704(4600)
158 PRK05564 DNA polymerase III su 99.2 1.8E-10 3.8E-15 122.8 14.6 174 288-495 2-182 (313)
159 PRK10865 protein disaggregatio 99.2 4.6E-10 1E-14 133.9 19.3 182 289-492 567-806 (857)
160 TIGR00678 holB DNA polymerase 99.2 3.9E-10 8.4E-15 111.0 14.0 160 301-496 3-184 (188)
161 KOG0990 Replication factor C, 99.2 4.8E-10 1E-14 113.7 14.4 207 271-514 22-237 (360)
162 TIGR02974 phageshock_pspF psp 99.2 1.3E-10 2.8E-15 124.1 11.0 180 292-492 1-213 (329)
163 COG1222 RPT1 ATP-dependent 26S 99.2 2.9E-11 6.2E-16 124.3 5.6 61 631-698 153-221 (406)
164 PRK07399 DNA polymerase III su 99.1 5.5E-10 1.2E-14 118.2 14.9 164 288-469 2-194 (314)
165 COG1224 TIP49 DNA helicase TIP 99.1 1.2E-09 2.6E-14 112.1 16.7 113 383-517 292-412 (450)
166 PF06068 TIP49: TIP49 C-termin 99.1 8.7E-10 1.9E-14 115.1 15.5 109 383-513 279-395 (398)
167 PRK11608 pspF phage shock prot 99.1 2.7E-10 5.8E-15 121.7 11.7 184 288-492 4-220 (326)
168 COG2204 AtoC Response regulato 99.1 3.4E-10 7.3E-15 123.2 12.1 191 288-492 139-354 (464)
169 COG0714 MoxR-like ATPases [Gen 99.1 5.8E-10 1.3E-14 119.7 13.8 152 291-467 25-200 (329)
170 TIGR01817 nifA Nif-specific re 99.1 2.1E-10 4.6E-15 131.2 9.5 187 285-492 191-408 (534)
171 COG2607 Predicted ATPase (AAA+ 99.1 5.6E-09 1.2E-13 102.0 17.4 191 289-514 59-278 (287)
172 TIGR02442 Cob-chelat-sub cobal 99.1 3.5E-09 7.5E-14 122.8 19.2 160 289-468 3-212 (633)
173 KOG1969 DNA replication checkp 99.1 6.9E-10 1.5E-14 123.1 12.3 149 312-498 327-505 (877)
174 PF01637 Arch_ATPase: Archaeal 99.1 3E-10 6.5E-15 115.2 8.9 198 292-496 1-227 (234)
175 COG0470 HolB ATPase involved i 99.1 3.1E-09 6.7E-14 113.9 16.6 153 291-465 2-176 (325)
176 COG1221 PspF Transcriptional r 99.1 4.4E-10 9.5E-15 120.2 9.4 203 287-517 75-309 (403)
177 cd00009 AAA The AAA+ (ATPases 99.1 1E-09 2.2E-14 102.2 10.9 144 293-455 1-150 (151)
178 PRK08058 DNA polymerase III su 99.1 7.7E-10 1.7E-14 118.4 11.2 154 289-467 4-179 (329)
179 PRK05022 anaerobic nitric oxid 99.0 1.6E-09 3.6E-14 122.8 13.9 184 288-492 185-400 (509)
180 COG5271 MDN1 AAA ATPase contai 99.0 6.7E-09 1.4E-13 121.9 18.1 149 310-492 887-1060(4600)
181 PHA02244 ATPase-like protein 99.0 1.4E-09 3.1E-14 114.8 11.7 123 310-459 118-263 (383)
182 TIGR00763 lon ATP-dependent pr 99.0 2.3E-09 5.1E-14 127.3 15.0 104 590-700 282-385 (775)
183 COG3604 FhlA Transcriptional r 99.0 5.5E-10 1.2E-14 119.6 8.7 185 288-492 221-436 (550)
184 PRK15429 formate hydrogenlyase 99.0 2.6E-09 5.6E-14 125.8 14.8 186 287-492 373-589 (686)
185 PRK15424 propionate catabolism 99.0 2.4E-09 5.1E-14 120.5 13.8 185 288-489 217-435 (538)
186 TIGR02329 propionate_PrpR prop 99.0 2.3E-09 5E-14 120.7 13.7 197 287-508 209-438 (526)
187 COG1219 ClpX ATP-dependent pro 99.0 5.1E-09 1.1E-13 106.1 14.4 175 310-495 96-348 (408)
188 PRK11331 5-methylcytosine-spec 99.0 2.1E-09 4.6E-14 116.4 12.7 162 289-456 174-357 (459)
189 PRK04132 replication factor C 99.0 3.5E-09 7.6E-14 123.7 14.6 160 314-514 567-736 (846)
190 COG3829 RocR Transcriptional r 99.0 8.3E-10 1.8E-14 119.9 8.1 181 287-492 242-459 (560)
191 KOG0727 26S proteasome regulat 99.0 4.1E-10 8.8E-15 110.0 5.1 61 631-698 157-225 (408)
192 COG0466 Lon ATP-dependent Lon 99.0 5.4E-09 1.2E-13 116.5 14.3 105 586-699 281-387 (782)
193 PF01078 Mg_chelatase: Magnesi 99.0 2.5E-10 5.5E-15 111.3 3.5 132 289-435 2-161 (206)
194 PRK10820 DNA-binding transcrip 99.0 2.2E-09 4.7E-14 121.9 11.5 182 286-491 200-416 (520)
195 TIGR03015 pepcterm_ATPase puta 99.0 3.1E-08 6.6E-13 103.3 19.0 172 310-496 42-231 (269)
196 PRK05707 DNA polymerase III su 99.0 7.9E-09 1.7E-13 110.0 13.9 135 311-468 22-176 (328)
197 PF07728 AAA_5: AAA domain (dy 98.9 7.1E-10 1.5E-14 103.5 5.1 111 313-449 1-139 (139)
198 PF07724 AAA_2: AAA domain (Cd 98.9 7.1E-10 1.5E-14 106.9 5.0 116 310-433 2-130 (171)
199 PF13177 DNA_pol3_delta2: DNA 98.9 4.5E-09 9.8E-14 100.6 10.5 142 294-458 1-162 (162)
200 PRK08769 DNA polymerase III su 98.9 2.2E-08 4.9E-13 105.6 16.7 154 296-467 10-182 (319)
201 PRK11388 DNA-binding transcrip 98.9 6.3E-09 1.4E-13 121.7 13.9 177 288-492 323-534 (638)
202 PF06309 Torsin: Torsin; Inte 98.9 2.4E-09 5.1E-14 95.8 7.7 73 620-694 16-90 (127)
203 PF00158 Sigma54_activat: Sigm 98.9 2.9E-10 6.2E-15 109.3 1.9 139 292-454 1-167 (168)
204 PRK05201 hslU ATP-dependent pr 98.9 2.2E-09 4.8E-14 115.0 8.7 77 621-700 7-88 (443)
205 KOG0745 Putative ATP-dependent 98.9 1.6E-08 3.5E-13 106.2 14.3 175 310-495 225-489 (564)
206 TIGR00764 lon_rel lon-related 98.9 3.3E-08 7.2E-13 113.6 17.7 120 382-517 217-371 (608)
207 smart00350 MCM minichromosome 98.9 8.3E-09 1.8E-13 116.8 12.5 206 290-519 203-455 (509)
208 COG1239 ChlI Mg-chelatase subu 98.9 7.4E-08 1.6E-12 102.3 17.5 161 291-471 18-233 (423)
209 PRK07993 DNA polymerase III su 98.9 3.7E-08 8.1E-13 105.1 14.8 168 296-495 8-196 (334)
210 PRK05342 clpX ATP-dependent pr 98.9 5.4E-09 1.2E-13 114.2 8.5 78 620-700 62-146 (412)
211 PTZ00111 DNA replication licen 98.8 2.7E-08 5.8E-13 115.8 13.9 208 290-518 450-733 (915)
212 TIGR02031 BchD-ChlD magnesium 98.8 6.8E-08 1.5E-12 110.9 17.1 182 311-520 16-241 (589)
213 COG1220 HslU ATP-dependent pro 98.8 9.9E-08 2.1E-12 97.5 16.1 111 383-495 251-383 (444)
214 KOG2004 Mitochondrial ATP-depe 98.8 7.2E-08 1.6E-12 107.1 15.8 101 594-701 377-477 (906)
215 TIGR00390 hslU ATP-dependent p 98.8 8.4E-09 1.8E-13 110.5 8.1 75 621-699 4-84 (441)
216 COG1223 Predicted ATPase (AAA+ 98.8 5.3E-09 1.1E-13 103.0 5.7 57 631-694 123-183 (368)
217 PF05496 RuvB_N: Holliday junc 98.8 7.8E-09 1.7E-13 101.7 6.6 61 629-696 24-84 (233)
218 PRK06871 DNA polymerase III su 98.8 1.1E-07 2.4E-12 100.6 15.6 148 297-468 9-177 (325)
219 PRK08116 hypothetical protein; 98.8 5.2E-08 1.1E-12 101.1 13.0 130 312-458 115-250 (268)
220 COG0606 Predicted ATPase with 98.8 1.9E-08 4.1E-13 108.1 9.8 147 288-460 177-382 (490)
221 PRK12377 putative replication 98.8 1.7E-08 3.6E-13 103.0 8.5 73 310-394 100-175 (248)
222 PRK06964 DNA polymerase III su 98.8 5E-08 1.1E-12 103.9 12.4 152 298-468 9-202 (342)
223 PRK08181 transposase; Validate 98.8 2.5E-08 5.4E-13 102.9 9.8 118 310-449 105-230 (269)
224 PF07726 AAA_3: ATPase family 98.8 8E-09 1.7E-13 92.6 5.3 107 313-450 1-130 (131)
225 TIGR00368 Mg chelatase-related 98.8 2.6E-08 5.6E-13 111.5 10.7 150 288-461 190-395 (499)
226 KOG0738 AAA+-type ATPase [Post 98.8 1.2E-08 2.7E-13 105.8 7.3 86 596-697 193-278 (491)
227 KOG0989 Replication factor C, 98.8 9E-09 2E-13 104.1 6.0 60 612-685 24-83 (346)
228 TIGR02915 PEP_resp_reg putativ 98.8 4.7E-08 1E-12 109.6 12.4 184 288-492 137-352 (445)
229 KOG1942 DNA helicase, TBP-inte 98.8 1.5E-07 3.2E-12 94.3 14.1 110 383-514 297-415 (456)
230 KOG0737 AAA+-type ATPase [Post 98.8 7.3E-09 1.6E-13 107.5 5.1 78 611-700 88-165 (386)
231 TIGR00382 clpX endopeptidase C 98.8 1.8E-08 3.8E-13 109.6 8.3 76 620-698 68-152 (413)
232 KOG0731 AAA+-type ATPase conta 98.7 9.7E-09 2.1E-13 116.8 5.7 62 631-699 313-381 (774)
233 PRK06526 transposase; Provisio 98.7 2.3E-08 5E-13 102.7 7.7 105 267-394 64-171 (254)
234 smart00763 AAA_PrkA PrkA AAA d 98.7 1.6E-07 3.4E-12 99.5 14.2 82 408-490 249-346 (361)
235 PRK06090 DNA polymerase III su 98.7 1.6E-07 3.4E-12 99.1 14.0 148 297-467 10-177 (319)
236 KOG2227 Pre-initiation complex 98.7 1.2E-06 2.6E-11 93.6 19.8 205 290-516 150-378 (529)
237 PF14532 Sigma54_activ_2: Sigm 98.7 8.5E-09 1.9E-13 96.1 3.4 130 293-458 1-137 (138)
238 PF02861 Clp_N: Clp amino term 98.7 2.4E-08 5.1E-13 76.5 5.2 51 96-146 1-53 (53)
239 smart00382 AAA ATPases associa 98.7 9.2E-08 2E-12 88.0 10.2 126 311-455 2-145 (148)
240 CHL00181 cbbX CbbX; Provisiona 98.7 3.7E-08 8.1E-13 103.1 8.1 66 619-685 13-85 (287)
241 PF01695 IstB_IS21: IstB-like 98.7 2.9E-08 6.3E-13 96.5 6.6 84 298-394 34-120 (178)
242 PRK10923 glnG nitrogen regulat 98.7 4E-08 8.7E-13 111.0 8.5 183 289-492 137-351 (469)
243 TIGR02881 spore_V_K stage V sp 98.7 4.2E-08 9E-13 101.8 7.9 67 631-698 8-85 (261)
244 PF13173 AAA_14: AAA domain 98.6 8.2E-08 1.8E-12 88.2 7.5 123 312-461 3-126 (128)
245 KOG0739 AAA+-type ATPase [Post 98.6 3.7E-08 7.9E-13 98.8 5.3 58 610-682 128-189 (439)
246 PRK07952 DNA replication prote 98.6 1.2E-07 2.5E-12 96.6 9.0 72 312-394 100-174 (244)
247 PRK09862 putative ATP-dependen 98.6 3.3E-07 7.3E-12 102.2 13.5 149 288-460 189-391 (506)
248 PF12775 AAA_7: P-loop contain 98.6 1.6E-07 3.5E-12 97.5 10.0 148 302-474 25-197 (272)
249 PRK13765 ATP-dependent proteas 98.6 9.1E-07 2E-11 101.5 16.8 123 382-520 226-383 (637)
250 KOG0729 26S proteasome regulat 98.6 4.3E-08 9.4E-13 96.8 4.9 61 631-698 179-247 (435)
251 TIGR02880 cbbX_cfxQ probable R 98.6 9.4E-08 2E-12 100.1 7.8 80 618-698 11-101 (284)
252 PRK08699 DNA polymerase III su 98.6 4.9E-07 1.1E-11 96.3 13.2 152 297-467 8-182 (325)
253 PF02861 Clp_N: Clp amino term 98.6 8.7E-08 1.9E-12 73.3 5.5 52 182-233 1-52 (53)
254 PRK09183 transposase/IS protei 98.6 1.4E-07 3E-12 97.5 8.2 162 266-458 67-241 (259)
255 COG1484 DnaC DNA replication p 98.6 2E-07 4.4E-12 95.8 9.3 110 310-440 104-218 (254)
256 KOG0734 AAA+-type ATPase conta 98.5 8.5E-08 1.8E-12 103.1 5.7 63 631-700 306-375 (752)
257 TIGR01818 ntrC nitrogen regula 98.5 2.4E-07 5.3E-12 104.4 9.6 182 290-492 134-347 (463)
258 PRK06835 DNA replication prote 98.5 6E-07 1.3E-11 95.4 11.3 120 310-450 182-306 (329)
259 PRK15115 response regulator Gl 98.5 2.1E-07 4.5E-12 104.4 8.2 181 291-492 135-347 (444)
260 PRK10787 DNA-binding ATP-depen 98.5 1.6E-06 3.5E-11 102.4 15.8 105 589-700 283-387 (784)
261 KOG0652 26S proteasome regulat 98.5 1.2E-07 2.6E-12 93.4 5.3 48 631-682 173-228 (424)
262 PRK11361 acetoacetate metaboli 98.5 2.3E-07 4.9E-12 104.5 8.2 180 289-492 142-356 (457)
263 COG2255 RuvB Holliday junction 98.5 2.1E-07 4.5E-12 93.5 6.5 51 631-685 28-78 (332)
264 KOG0726 26S proteasome regulat 98.5 9.6E-08 2.1E-12 95.6 4.0 62 630-698 186-255 (440)
265 KOG1514 Origin recognition com 98.5 5.2E-06 1.1E-10 92.8 17.9 220 271-515 380-626 (767)
266 PF13401 AAA_22: AAA domain; P 98.5 5.1E-07 1.1E-11 82.9 8.6 109 310-432 3-125 (131)
267 COG1219 ClpX ATP-dependent pro 98.5 9.7E-08 2.1E-12 96.9 3.6 63 621-683 53-121 (408)
268 KOG2680 DNA helicase TIP49, TB 98.5 1.8E-06 3.9E-11 86.9 12.5 110 383-514 289-406 (454)
269 PTZ00454 26S protease regulato 98.5 2.1E-07 4.6E-12 101.6 6.2 61 631-698 147-215 (398)
270 PRK06921 hypothetical protein; 98.4 5.1E-07 1.1E-11 93.5 8.5 124 310-449 116-240 (266)
271 PRK03992 proteasome-activating 98.4 2.5E-07 5.5E-12 101.3 5.9 61 631-698 133-201 (389)
272 PF03215 Rad17: Rad17 cell cyc 98.4 1.8E-06 3.9E-11 97.0 12.8 213 278-515 7-269 (519)
273 KOG0728 26S proteasome regulat 98.4 2.4E-07 5.3E-12 90.8 5.0 66 626-698 144-217 (404)
274 PLN03025 replication factor C 98.4 2.5E-07 5.5E-12 98.9 5.5 71 614-698 3-75 (319)
275 TIGR03689 pup_AAA proteasome A 98.4 3.5E-07 7.5E-12 102.1 6.0 50 631-684 184-241 (512)
276 PRK05917 DNA polymerase III su 98.4 3.9E-06 8.4E-11 87.0 13.0 138 297-457 4-154 (290)
277 PTZ00361 26 proteosome regulat 98.4 5.3E-07 1.2E-11 99.2 7.1 61 631-698 185-253 (438)
278 PF13191 AAA_16: AAA ATPase do 98.4 5.4E-07 1.2E-11 88.0 6.4 48 291-338 1-51 (185)
279 KOG0741 AAA+-type ATPase [Post 98.3 1.9E-06 4.1E-11 92.9 10.1 138 312-467 539-683 (744)
280 PHA00729 NTP-binding motif con 98.3 3.2E-06 7E-11 84.2 10.8 126 301-468 7-138 (226)
281 COG1220 HslU ATP-dependent pro 98.3 8.2E-07 1.8E-11 91.0 6.3 75 622-699 8-87 (444)
282 PF05729 NACHT: NACHT domain 98.3 7.7E-06 1.7E-10 78.0 12.7 144 313-470 2-163 (166)
283 KOG1051 Chaperone HSP104 and r 98.3 3.6E-06 7.9E-11 98.2 11.7 121 291-433 563-711 (898)
284 PRK13406 bchD magnesium chelat 98.3 1.5E-05 3.2E-10 91.1 16.2 177 311-520 25-233 (584)
285 smart00763 AAA_PrkA PrkA AAA d 98.3 1.1E-06 2.5E-11 93.1 6.7 69 630-701 52-128 (361)
286 COG2256 MGS1 ATPase related to 98.3 6.3E-07 1.4E-11 94.3 4.6 50 619-682 19-71 (436)
287 PRK10365 transcriptional regul 98.3 1.8E-06 3.9E-11 96.8 8.5 181 291-492 140-352 (441)
288 PF00931 NB-ARC: NB-ARC domain 98.3 3.3E-06 7.2E-11 88.8 9.8 173 295-495 1-194 (287)
289 PRK14962 DNA polymerase III su 98.3 1.2E-06 2.5E-11 97.9 6.6 48 631-686 16-63 (472)
290 KOG2228 Origin recognition com 98.3 7.9E-06 1.7E-10 84.0 11.8 166 290-470 24-219 (408)
291 PRK08939 primosomal protein Dn 98.3 1.7E-06 3.6E-11 91.4 7.1 72 310-394 155-229 (306)
292 TIGR01242 26Sp45 26S proteasom 98.2 1.4E-06 3.1E-11 94.9 6.1 62 630-698 123-192 (364)
293 TIGR01241 FtsH_fam ATP-depende 98.2 1.5E-06 3.3E-11 98.5 6.4 61 631-698 57-124 (495)
294 PRK07940 DNA polymerase III su 98.2 1.7E-06 3.7E-11 94.3 6.5 57 630-686 6-63 (394)
295 COG3283 TyrR Transcriptional r 98.2 1.3E-05 2.8E-10 82.8 12.3 178 287-490 201-410 (511)
296 PRK12402 replication factor C 98.2 1.4E-06 3.1E-11 93.8 5.6 72 613-698 4-77 (337)
297 PRK14956 DNA polymerase III su 98.2 1.3E-06 2.7E-11 96.3 5.1 48 631-686 20-67 (484)
298 PRK14964 DNA polymerase III su 98.2 2.3E-06 5E-11 95.2 6.6 46 631-684 15-60 (491)
299 PRK07132 DNA polymerase III su 98.2 2.2E-05 4.8E-10 82.4 13.6 145 298-467 4-159 (299)
300 TIGR00635 ruvB Holliday juncti 98.2 2.1E-06 4.7E-11 91.2 6.2 50 631-684 6-55 (305)
301 PRK04195 replication factor C 98.2 2.6E-06 5.6E-11 96.3 6.6 73 613-698 3-75 (482)
302 KOG0478 DNA replication licens 98.1 4E-06 8.7E-11 93.1 6.8 143 312-474 463-630 (804)
303 PRK14963 DNA polymerase III su 98.1 3.5E-06 7.6E-11 94.8 6.5 47 631-685 16-62 (504)
304 PRK00080 ruvB Holliday junctio 98.1 3.1E-06 6.8E-11 90.8 5.8 50 631-684 27-76 (328)
305 PRK14958 DNA polymerase III su 98.1 2.9E-06 6.4E-11 95.7 5.7 48 631-686 18-65 (509)
306 PRK15455 PrkA family serine pr 98.1 3.7E-06 7.9E-11 93.4 6.1 51 630-683 77-127 (644)
307 PRK14952 DNA polymerase III su 98.1 4.2E-06 9E-11 95.4 6.6 47 631-685 15-61 (584)
308 KOG1970 Checkpoint RAD17-RFC c 98.1 4.8E-05 1E-09 83.0 14.2 176 278-473 70-283 (634)
309 PRK07276 DNA polymerase III su 98.1 2.8E-05 6.1E-10 80.9 12.1 145 295-467 7-172 (290)
310 COG1241 MCM2 Predicted ATPase 98.1 5.4E-06 1.2E-10 94.7 7.4 205 289-514 285-538 (682)
311 PF01078 Mg_chelatase: Magnesi 98.1 2.5E-06 5.5E-11 83.5 4.0 45 629-684 3-47 (206)
312 PRK14961 DNA polymerase III su 98.1 3.5E-06 7.7E-11 91.6 5.6 47 631-685 18-64 (363)
313 CHL00176 ftsH cell division pr 98.1 4.1E-06 8.9E-11 96.6 6.3 62 631-699 185-253 (638)
314 PRK13531 regulatory ATPase Rav 98.1 5.5E-06 1.2E-10 91.0 6.9 57 618-685 9-65 (498)
315 PRK14955 DNA polymerase III su 98.1 3.7E-06 8.1E-11 92.5 5.7 48 631-686 18-65 (397)
316 PRK14949 DNA polymerase III su 98.1 3.4E-06 7.3E-11 98.3 5.3 48 631-686 18-65 (944)
317 COG1224 TIP49 DNA helicase TIP 98.1 7.3E-06 1.6E-10 84.8 7.1 71 628-703 38-108 (450)
318 COG0465 HflB ATP-dependent Zn 98.1 3.6E-06 7.8E-11 94.5 5.1 61 631-698 152-219 (596)
319 PRK14960 DNA polymerase III su 98.1 5E-06 1.1E-10 94.2 6.2 47 631-685 17-63 (702)
320 COG3284 AcoR Transcriptional a 98.1 3.7E-06 8.1E-11 93.5 5.1 183 293-492 316-520 (606)
321 PF06068 TIP49: TIP49 C-termin 98.0 8.9E-06 1.9E-10 85.6 7.0 69 629-702 24-92 (398)
322 PF14516 AAA_35: AAA-like doma 98.0 8.8E-05 1.9E-09 79.6 14.8 180 292-496 13-232 (331)
323 COG1618 Predicted nucleotide k 98.0 4.2E-05 9.2E-10 70.9 10.5 145 312-473 6-175 (179)
324 PRK07133 DNA polymerase III su 98.0 5.5E-06 1.2E-10 95.5 5.6 61 613-686 7-67 (725)
325 PRK14957 DNA polymerase III su 98.0 6.1E-06 1.3E-10 93.1 5.8 47 631-685 18-64 (546)
326 PF12774 AAA_6: Hydrolytic ATP 98.0 7.8E-06 1.7E-10 82.6 5.8 123 311-466 32-176 (231)
327 PRK05896 DNA polymerase III su 98.0 6E-06 1.3E-10 93.4 5.2 59 614-685 6-64 (605)
328 PRK12323 DNA polymerase III su 98.0 6.8E-06 1.5E-10 92.9 5.6 47 631-685 18-64 (700)
329 PRK06645 DNA polymerase III su 98.0 5.9E-06 1.3E-10 92.7 5.0 47 631-685 23-69 (507)
330 PRK00440 rfc replication facto 98.0 8.3E-06 1.8E-10 87.2 5.8 72 612-697 5-78 (319)
331 KOG0651 26S proteasome regulat 98.0 7.2E-06 1.6E-10 83.3 4.9 46 646-698 157-202 (388)
332 PRK05563 DNA polymerase III su 98.0 1E-05 2.2E-10 92.5 6.7 48 630-685 17-64 (559)
333 PRK06305 DNA polymerase III su 98.0 7.7E-06 1.7E-10 91.2 5.3 48 631-686 19-66 (451)
334 COG3854 SpoIIIAA ncharacterize 98.0 5.9E-05 1.3E-09 73.8 10.6 91 301-394 127-230 (308)
335 PLN00020 ribulose bisphosphate 98.0 1E-05 2.2E-10 85.4 5.6 39 657-698 146-184 (413)
336 PRK14954 DNA polymerase III su 97.9 8.1E-06 1.8E-10 93.7 5.2 47 631-685 18-64 (620)
337 PF00004 AAA: ATPase family as 97.9 5.6E-06 1.2E-10 75.9 3.2 35 662-699 1-35 (132)
338 PRK14951 DNA polymerase III su 97.9 9E-06 1.9E-10 93.0 5.4 47 631-685 18-64 (618)
339 PRK14969 DNA polymerase III su 97.9 1E-05 2.2E-10 92.0 5.3 48 631-686 18-65 (527)
340 TIGR02397 dnaX_nterm DNA polym 97.9 1.2E-05 2.7E-10 87.2 5.8 48 631-686 16-63 (355)
341 cd00009 AAA The AAA+ (ATPases 97.9 1.6E-05 3.4E-10 73.7 5.7 58 633-699 2-59 (151)
342 PRK08691 DNA polymerase III su 97.9 1E-05 2.2E-10 92.6 5.0 48 631-686 18-65 (709)
343 PRK07003 DNA polymerase III su 97.9 1.1E-05 2.3E-10 92.5 5.2 47 631-685 18-64 (830)
344 KOG0991 Replication factor C, 97.9 1.5E-05 3.3E-10 77.8 5.3 71 614-698 17-89 (333)
345 KOG2543 Origin recognition com 97.9 0.00018 3.8E-09 75.6 13.4 160 290-468 6-191 (438)
346 PRK07994 DNA polymerase III su 97.9 1.1E-05 2.5E-10 92.4 5.1 48 631-686 18-65 (647)
347 PF07728 AAA_5: AAA domain (dy 97.9 1.3E-05 2.7E-10 74.7 4.6 40 661-703 1-40 (139)
348 PRK14953 DNA polymerase III su 97.9 1.3E-05 2.9E-10 89.9 5.4 47 631-685 18-64 (486)
349 PRK07764 DNA polymerase III su 97.9 1.3E-05 2.8E-10 94.9 5.5 47 631-685 17-63 (824)
350 CHL00206 ycf2 Ycf2; Provisiona 97.9 7.6E-06 1.6E-10 100.7 3.5 40 657-699 1628-1667(2281)
351 PRK13342 recombination factor 97.9 1.1E-05 2.4E-10 89.4 4.5 55 631-697 14-71 (413)
352 PRK14959 DNA polymerase III su 97.9 1.4E-05 2.9E-10 91.0 5.1 58 615-685 7-64 (624)
353 PF00493 MCM: MCM2/3/5 family 97.9 1.8E-06 3.9E-11 92.5 -1.8 178 312-518 58-278 (331)
354 PHA02544 44 clamp loader, smal 97.9 1.8E-05 3.8E-10 84.6 5.8 72 610-697 7-78 (316)
355 PRK05818 DNA polymerase III su 97.9 0.00012 2.6E-09 74.4 11.2 122 311-457 7-147 (261)
356 PRK14950 DNA polymerase III su 97.8 1.6E-05 3.4E-10 91.8 5.3 47 631-685 18-64 (585)
357 PRK06647 DNA polymerase III su 97.8 1.6E-05 3.5E-10 90.7 5.3 48 631-686 18-65 (563)
358 PF07693 KAP_NTPase: KAP famil 97.8 0.00096 2.1E-08 71.4 18.8 85 381-474 171-267 (325)
359 PRK09111 DNA polymerase III su 97.8 1.6E-05 3.5E-10 91.1 5.1 47 631-685 26-72 (598)
360 PRK14965 DNA polymerase III su 97.8 2.4E-05 5.2E-10 89.9 6.5 48 631-686 18-65 (576)
361 PRK11331 5-methylcytosine-spec 97.8 3.2E-05 6.9E-10 84.4 7.0 56 631-698 177-232 (459)
362 KOG0480 DNA replication licens 97.8 9.9E-05 2.2E-09 81.7 10.7 188 289-496 344-573 (764)
363 PRK08451 DNA polymerase III su 97.8 2.2E-05 4.7E-10 88.3 5.6 48 631-686 16-63 (535)
364 PRK14970 DNA polymerase III su 97.8 2.6E-05 5.6E-10 85.2 6.1 47 631-685 19-65 (367)
365 PF12780 AAA_8: P-loop contain 97.8 9.4E-05 2E-09 76.5 9.5 165 292-471 10-211 (268)
366 PRK13407 bchI magnesium chelat 97.8 2.2E-05 4.8E-10 83.6 4.9 44 631-683 10-53 (334)
367 COG0606 Predicted ATPase with 97.8 1.2E-05 2.7E-10 86.9 3.0 42 631-683 181-222 (490)
368 PRK14948 DNA polymerase III su 97.8 2.6E-05 5.6E-10 90.0 5.5 48 631-686 18-65 (620)
369 KOG2170 ATPase of the AAA+ sup 97.8 4.7E-05 1E-09 77.4 6.6 67 620-688 73-139 (344)
370 PRK07471 DNA polymerase III su 97.8 3.3E-05 7.1E-10 83.6 5.9 49 631-687 21-69 (365)
371 TIGR00764 lon_rel lon-related 97.8 2.8E-05 6E-10 89.8 5.5 53 623-686 12-64 (608)
372 COG0714 MoxR-like ATPases [Gen 97.7 5.4E-05 1.2E-09 81.4 7.2 66 620-699 15-80 (329)
373 cd01120 RecA-like_NTPases RecA 97.7 0.00016 3.5E-09 68.5 9.3 24 314-337 2-25 (165)
374 smart00382 AAA ATPases associa 97.7 3.3E-05 7.1E-10 70.8 4.3 41 660-700 3-43 (148)
375 PRK06893 DNA replication initi 97.7 4.6E-05 1E-09 77.4 5.5 36 661-696 41-76 (229)
376 TIGR02902 spore_lonB ATP-depen 97.7 6.6E-05 1.4E-09 85.6 7.2 58 631-697 67-131 (531)
377 PRK07399 DNA polymerase III su 97.7 5.3E-05 1.1E-09 80.4 6.0 51 629-687 4-54 (314)
378 TIGR02640 gas_vesic_GvpN gas v 97.7 7.9E-05 1.7E-09 77.3 7.1 35 661-698 23-57 (262)
379 KOG2028 ATPase related to the 97.7 4E-05 8.8E-10 79.4 4.8 69 592-682 114-185 (554)
380 COG3267 ExeA Type II secretory 97.7 0.00053 1.1E-08 68.7 12.4 175 310-495 50-237 (269)
381 PRK08903 DnaA regulatory inact 97.7 7E-05 1.5E-09 76.0 6.3 39 660-698 43-81 (227)
382 PRK13341 recombination factor 97.7 4E-05 8.7E-10 89.7 5.0 54 631-696 30-86 (725)
383 PRK14971 DNA polymerase III su 97.7 6.5E-05 1.4E-09 86.7 6.6 46 631-684 19-64 (614)
384 PRK12377 putative replication 97.7 5.7E-05 1.2E-09 77.2 5.4 39 660-698 102-140 (248)
385 PF00158 Sigma54_activat: Sigm 97.6 8.4E-05 1.8E-09 71.5 6.1 63 631-700 1-63 (168)
386 TIGR03420 DnaA_homol_Hda DnaA 97.6 5.6E-05 1.2E-09 76.5 5.2 40 660-699 39-78 (226)
387 KOG0740 AAA+-type ATPase [Post 97.6 3E-05 6.6E-10 83.7 3.1 50 630-682 154-209 (428)
388 PRK14700 recombination factor 97.6 0.00018 3.8E-09 74.2 8.1 89 417-514 2-92 (300)
389 KOG0482 DNA replication licens 97.6 0.00011 2.4E-09 79.1 6.6 212 291-520 343-592 (721)
390 KOG0743 AAA+-type ATPase [Post 97.6 4.8E-05 1E-09 81.7 3.8 24 660-683 236-259 (457)
391 KOG0732 AAA+-type ATPase conta 97.6 7.3E-05 1.6E-09 88.2 5.5 44 648-696 292-335 (1080)
392 TIGR02928 orc1/cdc6 family rep 97.6 0.00012 2.6E-09 79.9 6.8 67 629-700 15-87 (365)
393 PRK13765 ATP-dependent proteas 97.6 5.4E-05 1.2E-09 87.2 4.2 50 626-686 28-77 (637)
394 PF13177 DNA_pol3_delta2: DNA 97.6 0.00012 2.6E-09 70.1 5.7 49 633-689 1-49 (162)
395 PRK05564 DNA polymerase III su 97.5 9.3E-05 2E-09 78.9 5.5 49 630-686 5-53 (313)
396 PRK07952 DNA replication prote 97.5 9.5E-05 2.1E-09 75.4 5.2 39 660-698 100-138 (244)
397 TIGR02688 conserved hypothetic 97.5 0.00019 4.2E-09 77.4 7.6 97 295-422 192-291 (449)
398 CHL00081 chlI Mg-protoporyphyr 97.5 7.5E-05 1.6E-09 79.8 4.4 46 631-685 19-64 (350)
399 PF08298 AAA_PrkA: PrkA AAA do 97.5 0.00039 8.5E-09 73.3 9.5 67 424-491 275-344 (358)
400 PLN03210 Resistant to P. syrin 97.5 0.0012 2.6E-08 82.7 15.3 69 269-337 160-233 (1153)
401 PRK09112 DNA polymerase III su 97.5 0.00012 2.6E-09 78.9 5.5 48 631-686 25-72 (351)
402 KOG0742 AAA+-type ATPase [Post 97.5 9.4E-05 2E-09 77.8 4.4 30 653-682 378-407 (630)
403 TIGR02903 spore_lon_C ATP-depe 97.5 0.00032 6.8E-09 81.4 9.2 60 630-698 155-221 (615)
404 KOG0745 Putative ATP-dependent 97.5 0.0001 2.2E-09 78.2 4.6 33 660-695 227-259 (564)
405 COG0470 HolB ATPase involved i 97.5 0.00019 4E-09 76.8 6.8 50 631-687 3-52 (325)
406 PTZ00202 tuzin; Provisional 97.5 0.0017 3.8E-08 70.1 13.8 47 289-335 261-310 (550)
407 PF03266 NTPase_1: NTPase; In 97.4 4.4E-05 9.5E-10 73.4 1.2 133 313-460 1-161 (168)
408 PF10923 DUF2791: P-loop Domai 97.4 0.0071 1.5E-07 66.0 18.1 114 381-499 238-377 (416)
409 PRK08058 DNA polymerase III su 97.4 0.00015 3.3E-09 77.7 5.3 50 630-687 6-56 (329)
410 COG1373 Predicted ATPase (AAA+ 97.4 0.00049 1.1E-08 75.6 9.3 138 297-465 24-162 (398)
411 PRK08116 hypothetical protein; 97.4 0.00016 3.4E-09 75.1 5.0 37 661-697 116-152 (268)
412 KOG0744 AAA+-type ATPase [Post 97.4 0.00029 6.4E-09 72.3 6.6 46 638-683 155-201 (423)
413 PRK06835 DNA replication prote 97.4 7.4E-05 1.6E-09 79.6 2.4 39 660-698 184-222 (329)
414 KOG2170 ATPase of the AAA+ sup 97.4 0.00027 5.9E-09 72.0 6.1 113 292-420 84-203 (344)
415 PRK08939 primosomal protein Dn 97.4 0.0002 4.3E-09 75.8 5.3 39 660-698 157-195 (306)
416 PRK00411 cdc6 cell division co 97.4 0.00035 7.7E-09 77.0 7.3 66 630-700 31-98 (394)
417 PRK06581 DNA polymerase III su 97.4 0.0029 6.2E-08 63.3 12.6 149 300-469 3-160 (263)
418 PRK10536 hypothetical protein; 97.3 0.0023 5E-08 65.1 11.7 44 290-335 55-98 (262)
419 PF01695 IstB_IS21: IstB-like 97.3 9.4E-05 2E-09 71.9 1.7 38 660-697 48-85 (178)
420 COG4088 Predicted nucleotide k 97.3 0.00086 1.9E-08 64.8 8.0 25 314-338 4-28 (261)
421 PHA02774 E1; Provisional 97.3 0.0007 1.5E-08 75.8 8.4 38 298-335 420-458 (613)
422 KOG1942 DNA helicase, TBP-inte 97.3 0.00035 7.7E-09 70.6 5.5 64 629-700 38-104 (456)
423 COG4619 ABC-type uncharacteriz 97.3 0.00073 1.6E-08 63.2 7.0 27 309-335 27-53 (223)
424 COG1484 DnaC DNA replication p 97.3 0.00028 6.1E-09 72.6 4.9 39 660-698 106-144 (254)
425 PF13207 AAA_17: AAA domain; P 97.3 0.00021 4.5E-09 64.6 3.5 31 662-697 2-32 (121)
426 PF07726 AAA_3: ATPase family 97.3 0.00014 3E-09 65.6 2.2 25 661-685 1-25 (131)
427 cd01124 KaiC KaiC is a circadi 97.3 0.0011 2.4E-08 64.8 8.8 24 314-337 2-25 (187)
428 PF06309 Torsin: Torsin; Inte 97.3 0.00073 1.6E-08 60.8 6.8 48 291-338 26-80 (127)
429 KOG1808 AAA ATPase containing 97.3 0.0021 4.5E-08 80.4 12.9 134 310-468 439-597 (1856)
430 PRK15455 PrkA family serine pr 97.3 0.00026 5.7E-09 79.0 4.8 51 287-337 73-129 (644)
431 KOG0477 DNA replication licens 97.3 0.00046 1E-08 76.2 6.5 24 312-335 483-506 (854)
432 TIGR02030 BchI-ChlI magnesium 97.3 0.00028 6E-09 75.5 4.7 45 630-683 5-49 (337)
433 PRK10733 hflB ATP-dependent me 97.2 0.0004 8.7E-09 81.1 6.3 36 660-698 186-221 (644)
434 cd01128 rho_factor Transcripti 97.2 0.0019 4E-08 66.2 10.4 29 309-337 14-42 (249)
435 PF03969 AFG1_ATPase: AFG1-lik 97.2 0.0005 1.1E-08 74.3 6.6 130 309-457 60-201 (362)
436 PF13207 AAA_17: AAA domain; P 97.2 0.00029 6.3E-09 63.6 4.0 31 314-354 2-32 (121)
437 COG2812 DnaX DNA polymerase II 97.2 0.00017 3.7E-09 80.3 2.9 47 631-685 18-64 (515)
438 PRK08181 transposase; Validate 97.2 0.00016 3.5E-09 74.8 2.5 37 661-697 108-144 (269)
439 PRK04296 thymidine kinase; Pro 97.2 0.00064 1.4E-08 66.9 6.6 25 314-338 5-29 (190)
440 TIGR00602 rad24 checkpoint pro 97.2 0.0004 8.7E-09 79.9 5.8 63 612-683 72-134 (637)
441 PHA02244 ATPase-like protein 97.2 0.0007 1.5E-08 72.2 7.1 57 627-694 94-151 (383)
442 TIGR01650 PD_CobS cobaltochela 97.2 0.00045 9.7E-09 72.8 5.4 37 660-699 65-101 (327)
443 TIGR01817 nifA Nif-specific re 97.2 0.00051 1.1E-08 78.9 6.4 64 629-699 196-259 (534)
444 PF05673 DUF815: Protein of un 97.2 0.00059 1.3E-08 68.5 6.0 68 631-703 29-96 (249)
445 PRK06526 transposase; Provisio 97.2 0.00015 3.4E-09 74.5 1.7 35 661-695 100-134 (254)
446 PRK13695 putative NTPase; Prov 97.2 0.0026 5.6E-08 61.6 10.1 25 313-337 2-26 (174)
447 PRK04841 transcriptional regul 97.2 0.0048 1E-07 75.7 14.8 46 286-334 10-55 (903)
448 PRK08118 topology modulation p 97.2 0.00087 1.9E-08 64.5 6.6 23 313-335 3-25 (167)
449 PRK05642 DNA replication initi 97.1 0.00063 1.4E-08 69.3 5.4 39 660-698 46-84 (234)
450 PRK09376 rho transcription ter 97.1 0.0013 2.9E-08 70.5 8.0 30 309-338 167-196 (416)
451 PF13604 AAA_30: AAA domain; P 97.1 0.0041 8.9E-08 61.5 10.9 36 301-337 9-44 (196)
452 TIGR02237 recomb_radB DNA repa 97.1 0.0011 2.3E-08 66.3 6.8 79 311-396 12-111 (209)
453 PF03215 Rad17: Rad17 cell cyc 97.1 0.0006 1.3E-08 77.0 5.3 24 660-683 46-69 (519)
454 PF00910 RNA_helicase: RNA hel 97.1 0.00038 8.2E-09 61.7 2.9 24 662-685 1-24 (107)
455 COG5245 DYN1 Dynein, heavy cha 97.1 0.018 4E-07 69.6 17.1 139 309-471 1492-1659(3164)
456 PRK08727 hypothetical protein; 97.1 0.00087 1.9E-08 68.3 5.8 38 661-698 43-80 (233)
457 PRK08084 DNA replication initi 97.1 0.00075 1.6E-08 68.8 5.4 34 661-694 47-80 (235)
458 KOG1968 Replication factor C, 97.1 0.0004 8.6E-09 82.2 3.8 189 279-495 309-523 (871)
459 PHA00729 NTP-binding motif con 97.1 0.00035 7.5E-09 69.8 2.8 24 661-684 19-42 (226)
460 PF13191 AAA_16: AAA ATPase do 97.0 0.00041 8.8E-09 67.5 3.2 62 631-698 2-63 (185)
461 PRK06921 hypothetical protein; 97.0 0.00061 1.3E-08 70.7 4.5 36 660-695 118-154 (266)
462 PF13671 AAA_33: AAA domain; P 97.0 0.00044 9.6E-09 64.4 3.1 22 662-683 2-23 (143)
463 TIGR02442 Cob-chelat-sub cobal 97.0 0.00062 1.4E-08 79.4 4.7 45 630-683 5-49 (633)
464 TIGR01618 phage_P_loop phage n 97.0 0.00083 1.8E-08 67.2 5.0 23 310-332 11-33 (220)
465 TIGR02858 spore_III_AA stage I 97.0 0.0025 5.5E-08 66.0 8.5 81 311-391 111-203 (270)
466 PF05272 VirE: Virulence-assoc 97.0 0.0012 2.5E-08 65.3 5.6 99 313-456 54-169 (198)
467 PF14532 Sigma54_activ_2: Sigm 97.0 0.00064 1.4E-08 63.2 3.6 60 632-698 1-60 (138)
468 PRK00771 signal recognition pa 97.0 0.0064 1.4E-07 67.3 11.8 40 659-698 95-134 (437)
469 TIGR00678 holB DNA polymerase 96.9 0.00081 1.7E-08 66.0 4.4 27 660-686 15-41 (188)
470 PF00437 T2SE: Type II/IV secr 96.9 0.0026 5.7E-08 66.2 8.3 74 310-394 126-209 (270)
471 COG4650 RtcR Sigma54-dependent 96.9 0.001 2.3E-08 67.2 4.9 152 294-464 188-366 (531)
472 cd01121 Sms Sms (bacterial rad 96.9 0.001 2.2E-08 72.3 5.1 80 311-397 82-173 (372)
473 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0019 4.1E-08 67.0 6.9 91 296-394 66-161 (264)
474 COG3899 Predicted ATPase [Gene 96.9 0.0094 2E-07 71.8 13.7 48 291-338 1-51 (849)
475 PRK09183 transposase/IS protei 96.9 0.00051 1.1E-08 71.1 2.6 37 661-697 104-140 (259)
476 TIGR02974 phageshock_pspF psp 96.9 0.0017 3.7E-08 69.6 6.7 62 631-699 1-62 (329)
477 PRK05022 anaerobic nitric oxid 96.9 0.0015 3.2E-08 74.5 6.5 64 629-699 187-250 (509)
478 PF13671 AAA_33: AAA domain; P 96.9 0.0029 6.3E-08 58.8 7.4 22 314-335 2-23 (143)
479 PRK00149 dnaA chromosomal repl 96.9 0.0006 1.3E-08 76.5 3.1 39 660-698 149-189 (450)
480 TIGR00362 DnaA chromosomal rep 96.9 0.0006 1.3E-08 75.5 3.0 39 660-698 137-177 (405)
481 PRK04220 2-phosphoglycerate ki 96.8 0.0035 7.6E-08 65.4 8.1 27 656-683 90-116 (301)
482 TIGR00064 ftsY signal recognit 96.8 0.012 2.6E-07 61.3 12.1 42 657-698 70-111 (272)
483 TIGR01425 SRP54_euk signal rec 96.8 0.009 1.9E-07 65.7 11.6 41 658-698 99-139 (429)
484 PRK06067 flagellar accessory p 96.8 0.0056 1.2E-07 62.3 9.5 26 310-335 24-49 (234)
485 cd02019 NK Nucleoside/nucleoti 96.8 0.0015 3.3E-08 52.8 4.2 22 662-683 2-23 (69)
486 PF08298 AAA_PrkA: PrkA AAA do 96.8 0.0023 4.9E-08 67.7 6.5 66 629-699 61-126 (358)
487 PF13238 AAA_18: AAA domain; P 96.8 0.001 2.2E-08 60.4 3.5 22 662-683 1-22 (129)
488 PRK06620 hypothetical protein; 96.8 0.00088 1.9E-08 67.2 3.2 22 661-682 46-67 (214)
489 PF01583 APS_kinase: Adenylyls 96.8 0.0037 8E-08 59.0 7.1 41 313-360 4-44 (156)
490 PF10236 DAP3: Mitochondrial r 96.8 0.031 6.7E-07 59.4 14.9 102 370-471 141-278 (309)
491 PHA02624 large T antigen; Prov 96.8 0.0063 1.4E-07 68.7 9.9 27 309-335 429-455 (647)
492 COG1102 Cmk Cytidylate kinase 96.8 0.0034 7.4E-08 58.5 6.4 22 314-335 3-24 (179)
493 PRK12422 chromosomal replicati 96.7 0.0017 3.7E-08 72.3 5.3 38 660-697 142-179 (445)
494 PRK11608 pspF phage shock prot 96.7 0.0026 5.5E-08 68.2 6.5 64 629-699 6-69 (326)
495 PRK06696 uridine kinase; Valid 96.7 0.0031 6.7E-08 63.8 6.8 57 636-698 5-61 (223)
496 PRK13947 shikimate kinase; Pro 96.7 0.0036 7.9E-08 60.2 7.0 24 312-335 2-25 (171)
497 PRK11823 DNA repair protein Ra 96.7 0.0018 3.9E-08 72.2 5.5 112 311-429 80-204 (446)
498 KOG0990 Replication factor C, 96.7 0.00036 7.7E-09 71.8 -0.1 59 613-685 30-88 (360)
499 PHA02624 large T antigen; Prov 96.7 0.0028 6E-08 71.4 6.8 27 660-686 432-458 (647)
500 PF09848 DUF2075: Uncharacteri 96.7 0.0014 3E-08 71.1 4.4 23 313-335 3-25 (352)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-98 Score=842.71 Aligned_cols=569 Identities=45% Similarity=0.670 Sum_probs=491.2
Q ss_pred HhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCcHHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhhhcCCCC
Q 005179 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPF 163 (710)
Q Consensus 84 ~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (710)
+||++++++|..|+.+|++++|++|++||||++|+.++.+..+|..+|++++.++..+...+++.+...
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~----------- 69 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGDELLNLCGIDLDKLRQELEEFIDKLPKVL----------- 69 (786)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchHHHHHHcCCCHHHHHHHHHHHHhccCCCC-----------
Confidence 589999999999999999999999999999999999998889999999999999999999999887531
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhhhhhhcccCCC
Q 005179 164 SSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGRE 243 (710)
Q Consensus 164 ~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l~~~~~~~~~~ 243 (710)
+ . +.+|+.++++++.|+.+|+..++.||+++|||+|++.++++.+..+|..+|++...+.. +...+.+......
T Consensus 70 ~--~-~~~s~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-- 143 (786)
T COG0542 70 G--S-PYLSPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEE-LIEELRGGNEVDS-- 143 (786)
T ss_pred C--C-CCCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhcccchHHHHHHHhccCCHHHHHH-HHHHHhcccccCC--
Confidence 1 2 77899999999999999999999999999999999999999999999999999998844 4444432210000
Q ss_pred CccccccccccccccccccCCCCCCcchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCCh
Q 005179 244 PSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323 (710)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~G 323 (710)
.........|++|+.|+++.++.|++||+|||++|+++++++|+|+.+||++|+|+||||
T Consensus 144 --------------------~~~~~~~~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVG 203 (786)
T COG0542 144 --------------------KNAEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVG 203 (786)
T ss_pred --------------------cccccchhhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCC
Confidence 000113478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC
Q 005179 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403 (710)
Q Consensus 324 KT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~ 403 (710)
||+++++||+++.++++|..+.++.++.+|++.+++|++++|+||++++.+++++.+.+++||||||+|.++++|..
T Consensus 204 KTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~--- 280 (786)
T COG0542 204 KTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGAT--- 280 (786)
T ss_pred HHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcc---
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999765
Q ss_pred CCCC-hHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 005179 404 NKGT-GLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFT 482 (710)
Q Consensus 404 ~~~~-~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~ 482 (710)
++ .+|+.|+|+|.|++|.+.|||+||..+|+++++.|++|.|||+.|.|.+|+.++...||+++..+|+.+|++.|+
T Consensus 281 --~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~ 358 (786)
T COG0542 281 --EGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRIT 358 (786)
T ss_pred --cccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceec
Confidence 22 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhHHhhhhCCCChHHHHHHHHHHHhhHHHhhccccch
Q 005179 483 LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYD 562 (710)
Q Consensus 483 ~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (710)
++++.+++.++.||+++|++||||||++|+||+++++... .|.+ +..+..+......++..+...++ +...++.+.
T Consensus 359 D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~--l~~~~~~~~~l~~e~~~~~~e~~-~~~k~~~~~ 434 (786)
T COG0542 359 DEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEE--LDELERELAQLEIEKEALEREQD-EKEKKLIDE 434 (786)
T ss_pred HHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcc--hhHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHH
Confidence 9999999999999999999999999999999999999877 6553 11111111111111111111111 000011100
Q ss_pred hhhhccCCcchhhhhccCCCCCCCCCCCcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHH
Q 005179 563 DVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAIS 642 (710)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~ 642 (710)
...+.. .........+ . . .|+.++|+++++.|||||+.++..++...+.++++.|+++|+||++|++.|+
T Consensus 435 ~~~~~~--~~~~~~~~~~----~---~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs 504 (786)
T COG0542 435 IIKLKE--GRIPELEKEL----E---A-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVS 504 (786)
T ss_pred HHHHhh--hhhhhHHHHH----h---h-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHH
Confidence 000000 0000011111 0 1 2999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCCcchhhhccc
Q 005179 643 RAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNSVKVALSRQI 709 (710)
Q Consensus 643 ~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~~~~~~~~~~ 709 (710)
++|+++|+|+++|+||+|+|||.||||||||+|||+||..|||++.+||||||||| .++||+||||
T Consensus 505 ~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy-~EkHsVSrLI 570 (786)
T COG0542 505 DAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEY-MEKHSVSRLI 570 (786)
T ss_pred HHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHH-HHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999 6899999998
No 2
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=9.1e-83 Score=752.25 Aligned_cols=586 Identities=45% Similarity=0.708 Sum_probs=486.9
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhhh
Q 005179 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAA 158 (710)
Q Consensus 81 ~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (710)
||++||++++++|..|+.+|++++|++|+|||||+|||.++++ .++|..+|++++.++..+...+++.+.
T Consensus 1 m~~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid~~~l~~~l~~~l~~~~~-------- 72 (821)
T CHL00095 1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKIIGRGTG-------- 72 (821)
T ss_pred ChhhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHHhcCCC--------
Confidence 7999999999999999999999999999999999999999876 789999999999999999988876432
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhhhhhhc
Q 005179 159 QGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELA 238 (710)
Q Consensus 159 ~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l~~~~~ 238 (710)
.....++||+.++++|+.|..+|..+++.+|+++|||+||++++++.+.++|..+|++.+.++..+...+.....
T Consensus 73 -----~~~~~~~~S~~~~~vL~~A~~~A~~~~~~~I~~eHLLlALL~~~ds~a~~iL~~~gvd~~~L~~~l~~~l~~~~e 147 (821)
T CHL00095 73 -----FVAVEIPFTPRAKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLENLGVDLSKIRSLILNLIGEIIE 147 (821)
T ss_pred -----CCccccccCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHhccccc
Confidence 122468999999999999999999999999999999999999988889999999999999988776654421100
Q ss_pred ccCCCCccccccccccccccccccCCCCCCcchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEc
Q 005179 239 KEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318 (710)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~G 318 (710)
. ..+ . +. .....+.|++|++||++.+++|++++++||++++++++++|+++.++|++|+|
T Consensus 148 ~--~~~---~--------~~-------~~~~~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G 207 (821)
T CHL00095 148 A--ILG---A--------EQ-------SRSKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIG 207 (821)
T ss_pred c--ccc---c--------cc-------ccccchHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEEC
Confidence 0 000 0 00 00134689999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCC
Q 005179 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSG 398 (710)
Q Consensus 319 ppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~ 398 (710)
|||||||++|+++|+.+..+++|..+.+++++.+|++.+++|.+++|+|+++++.+++++...+++||||||+|.+++.+
T Consensus 208 ~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g 287 (821)
T CHL00095 208 EPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAG 287 (821)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999988788999999999999876
Q ss_pred CCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcC
Q 005179 399 TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHN 478 (710)
Q Consensus 399 ~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~ 478 (710)
.. .+..++.++|++.+++|++++|++||.++|+++++.|++|.+||+.|.+++|+.++...|++.+...|+.+++
T Consensus 288 ~~-----~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~ 362 (821)
T CHL00095 288 AA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHN 362 (821)
T ss_pred CC-----CCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 43 3356889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhHHhhhhCCCChHHHHHHHHHHHhhHHHhhcc
Q 005179 479 CKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558 (710)
Q Consensus 479 ~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (710)
+.++++++..++.++.+|+++|++|+||++++|+||+++++.....|.+. ..+.+....+..+........++..+..
T Consensus 363 v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (821)
T CHL00095 363 LSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAA--RELDKELREILKDKDEAIREQDFETAKQ 440 (821)
T ss_pred CCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhH--HHHHHHHHHHHHHHHHHHhCcchHHHHH
Confidence 99999999999999999999999999999999999999988765544321 1111111111111111111111111111
Q ss_pred ccchhhhhccCCcchhhhhccCCCCCCCCCCCcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHH
Q 005179 559 LKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAV 638 (710)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~ 638 (710)
+.+....+.............. .........|+.+||.++++.|||||+.++..++..++.++++.|.++|+||++|+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai 518 (821)
T CHL00095 441 LRDREMEVRAQIAAIIQSKKTE--EEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAV 518 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHH
Confidence 1110000000000000000000 00011235799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCCcchhhhccc
Q 005179 639 AAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNSVKVALSRQI 709 (710)
Q Consensus 639 ~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~~~~~~~~~~ 709 (710)
+.|..++++.+.|+.+|+||+++|||+||||||||+||++||+.|||++..++++|||+|+. +++++++|
T Consensus 519 ~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~-~~~~~~l~ 588 (821)
T CHL00095 519 VAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME-KHTVSKLI 588 (821)
T ss_pred HHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc-cccHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999954 67777765
No 3
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=1.2e-80 Score=729.38 Aligned_cols=593 Identities=35% Similarity=0.517 Sum_probs=475.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhhhcCCC
Q 005179 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKP 162 (710)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (710)
+|++++++|..|+++|++++|++|+|||||+|||.++++ ..+|..+|++++.+++++...+...+..
T Consensus 1 Lt~~a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~~~~~~~iL~~~Gvd~~~Lr~~le~~l~~~p~~----------- 69 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPRG----------- 69 (852)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCC-----------
Confidence 589999999999999999999999999999999998776 6789999999999999999888765421
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH-HHHHcCCCccCHHHHHHHhhhcCCc--hHHHHHHHh-cCCHHHHHHHHHHhhhhhhc
Q 005179 163 FSSAAKMPFSISTKRVFEAAVE-YSRSRGYNFIAPEHIALGLFTVDDG--SAGRVLKRL-GVDVNHLAAVAVSRLQGELA 238 (710)
Q Consensus 163 ~~~~~~~~~s~~~~~vl~~A~~-~a~~~g~~~I~~ehlLlall~~~~~--~a~~iL~~~-gv~~~~l~~~~~~~l~~~~~ 238 (710)
.+..+++|+.++++|+.|.. .+..+|+.+|+++|||+||++++++ .+..++..+ |++.+.+.+.+.....+.
T Consensus 70 --~~~~~~~S~~l~~vL~~A~~~~a~~~g~~~I~teHLLlALl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 145 (852)
T TIGR03345 70 --NTRTPVFSPHLVELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREALPALVEGS-- 145 (852)
T ss_pred --CCCCCCcCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHccccchhHHHHHHHHHhCCCHHHHHHHHHHHhcCC--
Confidence 11357899999999999997 4667899999999999999998765 566788887 999988877665422211
Q ss_pred ccCCCCccccccccccccccccccCCCCCCcchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEc
Q 005179 239 KEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318 (710)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~G 318 (710)
............ .... ......+.|++|+.||++.+|+|+++++|||++++++++++|+++.++|++|+|
T Consensus 146 ~~~~~~~~~~~~-----~~~~-----~~~~~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG 215 (852)
T TIGR03345 146 AEASAAAADAGP-----AAAA-----AGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTG 215 (852)
T ss_pred cccccccccccc-----cccc-----ccccchhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEEC
Confidence 000000000000 0000 000134689999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh-cCCeEEEEccchhhhhC
Q 005179 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGS 397 (710)
Q Consensus 319 ppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~-~~~~IL~IDEid~l~~~ 397 (710)
|||||||++++++|+.+..+.+|..+.+.+++.++++.+.+|.+++|+|+.+++.+++++.. ..++||||||+|.+++.
T Consensus 216 ~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~ 295 (852)
T TIGR03345 216 EAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGA 295 (852)
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999975 45799999999999887
Q ss_pred CCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhc
Q 005179 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (710)
Q Consensus 398 ~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~ 477 (710)
|.. .+..++.++|++.+++|.++|||+||.++|.+++++|++|.|||+.|.|++|+.+++..||+++...|+.+|
T Consensus 296 g~~-----~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~ 370 (852)
T TIGR03345 296 GGQ-----AGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHH 370 (852)
T ss_pred CCc-----cccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcC
Confidence 643 235678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhH-----Hh-------hhhCCCC----hH--
Q 005179 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQ-----QT-------CILSKPP----DD-- 539 (710)
Q Consensus 478 ~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~-----~~-------~~l~~~~----~~-- 539 (710)
++.++++++..++.++.||++++++|||||||+|+||+++++.....+.+. ++ ..+.++. +.
T Consensus 371 ~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (852)
T TIGR03345 371 GVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDE 450 (852)
T ss_pred CCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHH
Confidence 999999999999999999999999999999999999999998755444321 00 0111110 00
Q ss_pred ----HH-------HHHHHHHHhhHHHh--hccc-------cchhhhhccCCc----chh-hhhccC--CCCCCCCCCCcC
Q 005179 540 ----YW-------QEIRTVQAMHEVVQ--GSRL-------KYDDVVASMGDT----SEI-VVESSL--PSASDDDEPAVV 592 (710)
Q Consensus 540 ----~~-------~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~----~~~-~~~~~~--~~~~~~~~~~~v 592 (710)
+. +++......++.+. ..+. ...... ..... ..+ .....+ ...........|
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 529 (852)
T TIGR03345 451 RLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADA-PADDDAALRAQLAELEAALASAQGEEPLVFPEV 529 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-hhhhhHHHHHHHHHHHHHHHHHhhcccccccee
Confidence 00 00000000000000 0000 000000 00000 000 000000 000111234569
Q ss_pred CHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcH
Q 005179 593 GPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGK 672 (710)
Q Consensus 593 ~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGK 672 (710)
+.++|+++++.|||||+.++..++..++.++++.|.++|+||++|++.|..++++++.|+.+|.||++.|||+|||||||
T Consensus 530 ~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGK 609 (852)
T TIGR03345 530 DAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGK 609 (852)
T ss_pred cHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcceeeCCCCCCCcchhhhccc
Q 005179 673 TELAKSLAACYFGSVRIHYLFFPSPFNSVKVALSRQI 709 (710)
Q Consensus 673 T~lAkaLA~~lfg~~~~li~~d~se~~~~~~~~~~~~ 709 (710)
|++|++||+.|||++..++++|||+|+ .+++++++|
T Consensus 610 T~lA~~La~~l~~~~~~~~~~dmse~~-~~~~~~~l~ 645 (852)
T TIGR03345 610 TETALALAELLYGGEQNLITINMSEFQ-EAHTVSRLK 645 (852)
T ss_pred HHHHHHHHHHHhCCCcceEEEeHHHhh-hhhhhcccc
Confidence 999999999999999999999999995 688888886
No 4
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=5.5e-79 Score=712.78 Aligned_cols=529 Identities=42% Similarity=0.656 Sum_probs=466.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCcHHHHHHCCCCHHHHHHHHHHHhhc-CCCCCCchhhhcCCCC
Q 005179 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHS-TNNQDTDDAAAQGKPF 163 (710)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~l~~~gv~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 163 (710)
||++++++|..|+++|++++|.+|++||||+|||.++++.++|..+|++++.+++++...++. .+... .
T Consensus 1 ~~~~a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~~~~iL~~~gid~~~l~~~l~~~l~~~~p~~~----------~ 70 (731)
T TIGR02639 1 ISEELERILDAALEEAKKRRHEFVTLEHILLALLFDSDAIEILEECGGDVEALRKDLEDYLENNLPSIT----------E 70 (731)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCchHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCC----------C
Confidence 689999999999999999999999999999999999877889999999999999999988873 32210 1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhhhhhhcccCCC
Q 005179 164 SSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGRE 243 (710)
Q Consensus 164 ~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l~~~~~~~~~~ 243 (710)
..+..+++|+.++++|+.|+.+|..+|+.+|+++|||+||++++++.+..+|..+|++.+.+...+....... ....
T Consensus 71 ~~~~~~~~S~~lk~vL~~A~~~A~~~g~~~I~teHLLLALl~~~~~~a~~lL~~~gi~~~~l~~~l~~~~~~~---~~~~ 147 (731)
T TIGR02639 71 ENEADPEQTVGVQRVLQRALLHVKSAGKKEIGIGDILVALFDEEDSHASYFLKSQGITRLDILEYISHGIPKD---DGKN 147 (731)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCcccHHHHHHHHcCCCHHHHHHHHHhhcccc---cccc
Confidence 1124688999999999999999999999999999999999999889899999999999988876654211100 0000
Q ss_pred CccccccccccccccccccCCCCCCcchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCCh
Q 005179 244 PSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323 (710)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~G 323 (710)
.... . .... ......+.|++|+.||++.+++|++++++||++++++++++|+++.++|+||+||||||
T Consensus 148 ~~~~-~------~~~~-----~~~~~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~G 215 (731)
T TIGR02639 148 RDAE-E------AGKE-----EAKKQEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVG 215 (731)
T ss_pred cccc-c------cccc-----ccccchhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCC
Confidence 0000 0 0000 00013468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC
Q 005179 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403 (710)
Q Consensus 324 KT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~ 403 (710)
||++++++|+.+..+++|..+.+++++.++++.+.+|.++.|+++++++.+++++....++||||||+|.+++++..
T Consensus 216 KT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~--- 292 (731)
T TIGR02639 216 KTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT--- 292 (731)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC---
Confidence 99999999999999999999999999999999999999999999999999999998777899999999999987643
Q ss_pred CCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCH
Q 005179 404 NKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTL 483 (710)
Q Consensus 404 ~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~ 483 (710)
.++..+++++|++.+++|.+.+||+||..+|.++++.|++|.|||+.|.|++|+.+++.+||+.+..+|+.+|++.+++
T Consensus 293 -~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~ 371 (731)
T TIGR02639 293 -SGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSD 371 (731)
T ss_pred -CCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCH
Confidence 1335678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhHHhhhhCCCChHHHHHHHHHHHhhHHHhhccccchh
Q 005179 484 EAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDD 563 (710)
Q Consensus 484 ~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (710)
+++..++.++.+|++++++|+||++++|+|++++++.....
T Consensus 372 ~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~--------------------------------------- 412 (731)
T TIGR02639 372 EALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAK--------------------------------------- 412 (731)
T ss_pred HHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccc---------------------------------------
Confidence 99999999999999999999999999999998766531100
Q ss_pred hhhccCCcchhhhhccCCCCCCCCCCCcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHH
Q 005179 564 VVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISR 643 (710)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~ 643 (710)
....|+.+||..+++.|+|||+..+++++..++.++++.|.++|+||++|++.|..
T Consensus 413 ------------------------~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~ 468 (731)
T TIGR02639 413 ------------------------KKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVS 468 (731)
T ss_pred ------------------------cccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHH
Confidence 12468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCCcchhhhccc
Q 005179 644 AVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNSVKVALSRQI 709 (710)
Q Consensus 644 ~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~~~~~~~~~~ 709 (710)
++++.+.|+.+|+||.++|||+||||||||++|++||+.++ ..++++|||+|++ +++++++|
T Consensus 469 ~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~---~~~~~~d~se~~~-~~~~~~li 530 (731)
T TIGR02639 469 SIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG---VHLERFDMSEYME-KHTVSRLI 530 (731)
T ss_pred HHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc---CCeEEEeCchhhh-cccHHHHh
Confidence 99999999999999999999999999999999999999985 4799999999954 67777765
No 5
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=2.6e-78 Score=715.94 Aligned_cols=584 Identities=42% Similarity=0.638 Sum_probs=478.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhhhcCCC
Q 005179 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKP 162 (710)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (710)
||++++++|..|+.+|++++|++|+|||||+||+.++++ .++|..+|++++.+++++...+++.+..
T Consensus 1 fT~~a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~~Gvd~~~l~~~l~~~l~~~~~~----------- 69 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEKELEKLPKV----------- 69 (852)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHhcccccC-----------
Confidence 799999999999999999999999999999999999876 7899999999999999999988875432
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhhhhhhcccCC
Q 005179 163 FSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGR 242 (710)
Q Consensus 163 ~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l~~~~~~~~~ 242 (710)
.+.+..++||+.++++|+.|+.+|..+|+.+|+++|||+||++++++ ++++|..+|++.+.+.+.+.+...+. ..
T Consensus 70 ~~~~~~~~~S~~~~~vLe~A~~~A~~~g~~~I~teHLLlALl~e~~~-a~~iL~~~gi~~~~l~~~l~~~~~~~----~~ 144 (852)
T TIGR03346 70 SGPGGQVYLSPELNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGT-LGKLLKEAGATADALEAAINAVRGGQ----KV 144 (852)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCCcc-HHHHHHHcCCCHHHHHHHHHhhccCc----cc
Confidence 11124688999999999999999999999999999999999998776 67899999999988877654322100 00
Q ss_pred CCccccccccccccccccccCCCCCCcchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCC
Q 005179 243 EPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322 (710)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~ 322 (710)
+ . .. .....+.|++|+.||++.+++|++++++||++++++++++|+++.++|++|+|||||
T Consensus 145 ~-~-----------~~-------~~~~~~~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGv 205 (852)
T TIGR03346 145 T-S-----------AN-------AEDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGV 205 (852)
T ss_pred c-c-----------cc-------cccchhHHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCC
Confidence 0 0 00 001346899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCC
Q 005179 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVG 401 (710)
Q Consensus 323 GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~ 401 (710)
|||++++++++.+..+.+|..+.+.+++.++++.+++|.+++|+++.+++.+++.+... .++||||||+|.|+++|..
T Consensus 206 GKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~- 284 (852)
T TIGR03346 206 GKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA- 284 (852)
T ss_pred CHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC-
Confidence 99999999999999999999999999999999999999999999999999999998654 5899999999999876543
Q ss_pred CCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 005179 402 RGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKF 481 (710)
Q Consensus 402 ~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i 481 (710)
.+..++.++|++.+++|.+.|||+||.++|+++++.|+++.+||+.|.+++|+.+++..||+.+..+|+.+|++.+
T Consensus 285 ----~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~ 360 (852)
T TIGR03346 285 ----EGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRI 360 (852)
T ss_pred ----cchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCC
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhh-----HHh-------hhhCCCChH--------HH
Q 005179 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKE-----QQT-------CILSKPPDD--------YW 541 (710)
Q Consensus 482 ~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~-----~~~-------~~l~~~~~~--------~~ 541 (710)
+++++..++.++.+|+.+|++||||++|+|+||+++++.....|.+ .++ ..+.++.++ +.
T Consensus 361 ~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (852)
T TIGR03346 361 TDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLE 440 (852)
T ss_pred CHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999998875544432 111 111111110 00
Q ss_pred HHHHH-------HHHhhHHHh--h---cccc-----------------chhhhhccCCc------chhhh-hccCCC-CC
Q 005179 542 QEIRT-------VQAMHEVVQ--G---SRLK-----------------YDDVVASMGDT------SEIVV-ESSLPS-AS 584 (710)
Q Consensus 542 ~~~~~-------~~~~~~~~~--~---~~~~-----------------~~~~~~~~~~~------~~~~~-~~~~~~-~~ 584 (710)
.++.. ....+..+. . ..+. +.......... +.+.. ...... ..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (852)
T TIGR03346 441 KELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETK 520 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccc
Confidence 01100 000000000 0 0000 00000000000 00000 000000 00
Q ss_pred CCCCCCcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEE
Q 005179 585 DDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLF 664 (710)
Q Consensus 585 ~~~~~~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf 664 (710)
.......|+.++|..+++.|||||+.++..++..++.++++.|.++|+||++|++.|..++++.+.|+.+|+||.+.|||
T Consensus 521 ~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf 600 (852)
T TIGR03346 521 PRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLF 600 (852)
T ss_pred cccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEE
Confidence 11233569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCCcchhhhccc
Q 005179 665 CGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNSVKVALSRQI 709 (710)
Q Consensus 665 ~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~~~~~~~~~~ 709 (710)
+||||||||++|++||+.+|+++..++++|||+|+. +++++++|
T Consensus 601 ~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~-~~~~~~l~ 644 (852)
T TIGR03346 601 LGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME-KHSVARLI 644 (852)
T ss_pred EcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc-cchHHHhc
Confidence 999999999999999999999999999999999965 66777664
No 6
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=7.1e-78 Score=708.58 Aligned_cols=589 Identities=39% Similarity=0.585 Sum_probs=480.6
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 005179 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (710)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (710)
|||++||+.++.+|..|+.+|++++|.+|++||||+||+.++++ ..+|..+|++.+.+++.+...+++.+..
T Consensus 1 ~~~~~~~~~~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~------ 74 (857)
T PRK10865 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQV------ 74 (857)
T ss_pred CChHHhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHHhhCCCC------
Confidence 46899999999999999999999999999999999999998876 7789999999999999999988876531
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhhhhhh
Q 005179 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (710)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l~~~~ 237 (710)
.+....+++|+.++++|+.|+.++..+|+.+|+++|||+|++.++++ .+.+|..+|++.+.+.+.+.+...+.
T Consensus 75 -----~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~- 147 (857)
T PRK10865 75 -----EGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGT-LADILKAAGATTANITQAIEQMRGGE- 147 (857)
T ss_pred -----CCCCCCCCcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCcch-HHHHHHHcCCCHHHHHHHHHHhhccc-
Confidence 11124688999999999999999999999999999999999987654 44689999999998877654321110
Q ss_pred cccCCCCccccccccccccccccccCCCCCCcchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEE
Q 005179 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (710)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~ 317 (710)
... . .. + ....+.|++|+.||++.+++|+++++|||++++++++++|+++.++|++|+
T Consensus 148 ---~~~---~---------~~------~-~~~~~~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~ 205 (857)
T PRK10865 148 ---SVN---D---------QG------A-EDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLI 205 (857)
T ss_pred ---ccc---c---------cc------c-ccchhHHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEE
Confidence 000 0 00 0 013468999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh-cCCeEEEEccchhhhh
Q 005179 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIG 396 (710)
Q Consensus 318 GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~-~~~~IL~IDEid~l~~ 396 (710)
||||||||++++++|+.+..+.+|..+.+.+++.++++.+++|.+++|+|+.+++.+++++.. ..++||||||+|.+++
T Consensus 206 G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~ 285 (857)
T PRK10865 206 GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG 285 (857)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999998754 4689999999999988
Q ss_pred CCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhh
Q 005179 397 SGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH 476 (710)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~ 476 (710)
++.. .++.+.+++|++.+++|.+.|||+||.++|+++++.|++|.|||+.|.+.+|+.+++..||+.+..+|+.+
T Consensus 286 ~~~~-----~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~ 360 (857)
T PRK10865 286 AGKA-----DGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELH 360 (857)
T ss_pred CCCC-----ccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccC
Confidence 7643 44678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhH-----H-------hhhhCCCChH-----
Q 005179 477 HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQ-----Q-------TCILSKPPDD----- 539 (710)
Q Consensus 477 ~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~-----~-------~~~l~~~~~~----- 539 (710)
|++.++++++..++.++.||+.++++|++|++++|.+++..++....+|... . ...+..+.+.
T Consensus 361 ~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~ 440 (857)
T PRK10865 361 HHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKR 440 (857)
T ss_pred CCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999988766655431 1 1111111100
Q ss_pred ---HHHHHHHHHHhhH-------HH--hhcc---ccch----h---hhh----------ccCCcc------hhhhhccCC
Q 005179 540 ---YWQEIRTVQAMHE-------VV--QGSR---LKYD----D---VVA----------SMGDTS------EIVVESSLP 581 (710)
Q Consensus 540 ---~~~~~~~~~~~~~-------~~--~~~~---~~~~----~---~~~----------~~~~~~------~~~~~~~~~ 581 (710)
..+++...+.... .. .... ..+. . ... +..... .+.......
T Consensus 441 ~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (857)
T PRK10865 441 LDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLE 520 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhh
Confidence 0001111100000 00 0000 0000 0 000 000000 000000000
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 005179 582 SASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661 (710)
Q Consensus 582 ~~~~~~~~~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~ 661 (710)
..........|+.++|+.+++.|||||+.++..++..++.++++.|.++|+||+.|++.|..+++..++|+.+|++|++.
T Consensus 521 ~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~ 600 (857)
T PRK10865 521 GKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGS 600 (857)
T ss_pred ccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCce
Confidence 00111223569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCCcchhhhccc
Q 005179 662 MLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNSVKVALSRQI 709 (710)
Q Consensus 662 ~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~~~~~~~~~~ 709 (710)
|||+||||||||++|++||+.+|+++..++++|||+|.. .+++++++
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~-~~~~~~Li 647 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME-KHSVSRLV 647 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh-hhhHHHHh
Confidence 999999999999999999999999999999999999954 56666654
No 7
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-75 Score=667.71 Aligned_cols=533 Identities=36% Similarity=0.572 Sum_probs=460.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCcHHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhhhcCCCCC
Q 005179 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFS 164 (710)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (710)
+|+.+..+|..|+.+|+.++|.+|++||||++|+.+++...+|..+|++.+.+++.+...++...+.. + ...
T Consensus 2 ~~~~~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~ 73 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVL-----P---ASE 73 (758)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChhHHHHHHHcCCCHHHHHHHHHHHHhhcCCcC-----C---CCC
Confidence 68999999999999999999999999999999998776678999999999999999998877422110 0 001
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhhhhhhcccCCCC
Q 005179 165 SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP 244 (710)
Q Consensus 165 ~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l~~~~~~~~~~~ 244 (710)
...+++++..++++|+.|+.+|+.+++.+|+++|||+||++++++.+..+|..+|++...+...+.+ +.......+.
T Consensus 74 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~ 150 (758)
T PRK11034 74 EERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISH---GTRKDEPSQS 150 (758)
T ss_pred CcCCcCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcchHHHHHHHcCCCHHHHHHHHHh---CCcccccccc
Confidence 1135778999999999999999999999999999999999998899999999999998876554221 1000000000
Q ss_pred ccccccccccccccccccCCCCCCcchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChH
Q 005179 245 SLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGK 324 (710)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GK 324 (710)
......+ .++. .......|++|++||++.++.|++++++||++++++++++|+++.++|+||+|||||||
T Consensus 151 ---~~~~~~~-~~~~------~~~~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGK 220 (758)
T PRK11034 151 ---SDPGSQP-NSEE------QAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGK 220 (758)
T ss_pred ---ccccccc-cccc------cccchhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCH
Confidence 0000000 0000 00123689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC
Q 005179 325 TAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN 404 (710)
Q Consensus 325 T~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~ 404 (710)
|++|+++++.+...++|..+.++.++.+++..++.|.++.|+++.+++.+++.+...++.||||||+|.+++.+..
T Consensus 221 T~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~---- 296 (758)
T PRK11034 221 TAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---- 296 (758)
T ss_pred HHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC----
Confidence 9999999999999999999999999999999999999999999999999999998878899999999999987643
Q ss_pred CCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHH
Q 005179 405 KGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE 484 (710)
Q Consensus 405 ~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~ 484 (710)
.++..++.++|++++++|++.||++||.++|.++++.|++|.|||+.|.|++|+.+++..||+.+..+|+.+|++.++++
T Consensus 297 ~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~ 376 (758)
T PRK11034 297 SGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK 376 (758)
T ss_pred CCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHH
Confidence 23467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhHHhhhhCCCChHHHHHHHHHHHhhHHHhhccccchhh
Q 005179 485 AINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDV 564 (710)
Q Consensus 485 ~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (710)
++..++.++.+|++++++|+|+++++|+||++.++.....
T Consensus 377 al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~---------------------------------------- 416 (758)
T PRK11034 377 AVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSK---------------------------------------- 416 (758)
T ss_pred HHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccc----------------------------------------
Confidence 9999999999999999999999999999998765521000
Q ss_pred hhccCCcchhhhhccCCCCCCCCCCCcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHH
Q 005179 565 VASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRA 644 (710)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~ 644 (710)
....|+.+||.++++.|+|||+..+..++...+.++++.|.++|+||++|++.|..+
T Consensus 417 -----------------------~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~ 473 (758)
T PRK11034 417 -----------------------RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEA 473 (758)
T ss_pred -----------------------cccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHH
Confidence 013578899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCCcchhhhccc
Q 005179 645 VKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNSVKVALSRQI 709 (710)
Q Consensus 645 i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~~~~~~~~~~ 709 (710)
++..+.|+.+|+||+++|||+||||||||++|++||+.+. ..++++|||+|+. .++++++|
T Consensus 474 i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~---~~~i~id~se~~~-~~~~~~Li 534 (758)
T PRK11034 474 IKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEYME-RHTVSRLI 534 (758)
T ss_pred HHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC---CCcEEeechhhcc-cccHHHHc
Confidence 9999999999999999999999999999999999999983 5899999999954 45566654
No 8
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-74 Score=651.79 Aligned_cols=587 Identities=37% Similarity=0.512 Sum_probs=491.3
Q ss_pred CcchhHHHhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCC-CCHHHHHHHHHHHhhcCCCCCC
Q 005179 77 PISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESG-ITIDKAREAVVSIWHSTNNQDT 153 (710)
Q Consensus 77 ~~~~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~g-v~~~~l~~~~~~~~~~~~~~~~ 153 (710)
+.+.+++.||++|.++|..|+.+|+++||++++|+|++.+||.++++ .+++...+ ++...+...+...+.+.|..
T Consensus 4 ~~~t~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~~l~~ralelc~~v~l~rlpt~-- 81 (898)
T KOG1051|consen 4 GVYTVQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHPLQCRALELCFNVSLNRLPTS-- 81 (898)
T ss_pred cccchHhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHhcCcccHHHHHHHHHHHHHhccCC--
Confidence 35678999999999999999999999999999999999999999998 67888888 99999999999999999875
Q ss_pred chhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhh
Q 005179 154 DDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (710)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l 233 (710)
.+++...++++.+++++..+.+.+..+++.||..||+.+.++-.+++.+.++++++|++..+++..+.+..
T Consensus 82 ---------~~p~~sn~l~aalkr~qa~qrr~~~~~~~~~vkvE~~~li~silDdp~vsrv~reag~~s~~vK~~ve~~~ 152 (898)
T KOG1051|consen 82 ---------YGPPVSNALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMREAGFSSSAVKSAVEQPV 152 (898)
T ss_pred ---------CCCccchHhHHHHHHHHHHHHhcchhhccchhhHhHHhhheeeecCchHHHHHHHhcCChHHHHHHHHhhc
Confidence 34456678888888888888898999999999999997777777888999999999999999999888766
Q ss_pred hhhhcccCCCCccccccccccccccccccCCCCCCcchhHHHhhhhhHHhhhhcCCCCcccC-HHHHHHHHHHHHcCCCC
Q 005179 234 QGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGR-ETEIQRIIQILCRRTKN 312 (710)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liGr-~~~i~~l~~~L~~~~~~ 312 (710)
... +.++. .| ......|.+|+.++++.++.|.++|++|+ ++++++++++|.++.++
T Consensus 153 g~~----~~~~~------------------~~-~~~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~ 209 (898)
T KOG1051|consen 153 GQF----RSPSR------------------GP-LWPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKN 209 (898)
T ss_pred ccc----CCCCc------------------CC-ccchhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCC
Confidence 211 11110 01 11457899999999999999999999999 99999999999999999
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHH-hcCCeEEEEccc
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ-KSGDVILFIDEV 391 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~-~~~~~IL~IDEi 391 (710)
|++|+|+||+|||.++..+++++..+++|..+.+..++.+|+..+++|.+++|+++.+++.+++++. ..+++||||||+
T Consensus 210 NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigel 289 (898)
T KOG1051|consen 210 NPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGEL 289 (898)
T ss_pred CceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecce
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 457899999999
Q ss_pred hhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHH
Q 005179 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLRE 471 (710)
Q Consensus 392 d~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~ 471 (710)
|++++.+.. .+..++.+.|++.+.++.+++||+||.++|+++++.+|+|.+||+.+.|+.|+.++...||.++..
T Consensus 290 h~lvg~g~~-----~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 290 HWLVGSGSN-----YGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSE 364 (898)
T ss_pred eeeecCCCc-----chHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhhh
Confidence 999988655 447899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhHHhhhhCCCChHHHHHHHHHHHhh
Q 005179 472 KYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMH 551 (710)
Q Consensus 472 ~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 551 (710)
+|+.+|++.++++++..++.++.+|++.+++|+++++++++||+..+......|... ..+.........++..++..+
T Consensus 365 ~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL--~~~~~~~~~~~~e~~~L~kk~ 442 (898)
T KOG1051|consen 365 RYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWL--QNLERVDIKLQDEISELQKKW 442 (898)
T ss_pred hhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHH--HhhhhhhhhhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999888888742 232222211222222222222
Q ss_pred H--------HHhhccccchh-----------hhhc-------cCCcchhhhhccCCCCCC----------------CCCC
Q 005179 552 E--------VVQGSRLKYDD-----------VVAS-------MGDTSEIVVESSLPSASD----------------DDEP 589 (710)
Q Consensus 552 ~--------~~~~~~~~~~~-----------~~~~-------~~~~~~~~~~~~~~~~~~----------------~~~~ 589 (710)
+ .......+... +... ......+........... ....
T Consensus 443 d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~ 522 (898)
T KOG1051|consen 443 NQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSND 522 (898)
T ss_pred hhhhccccccccccccccccccchhhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhccc
Confidence 2 00000000000 0000 000000000000000000 0000
Q ss_pred CcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCC
Q 005179 590 AVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669 (710)
Q Consensus 590 ~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpG 669 (710)
...++.+|..+.+.|+|+|+......+..++..|++.|+++|+||++|+.+|+.+|+++|.|+++| +|++.|||.||+|
T Consensus 523 ~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdg 601 (898)
T KOG1051|consen 523 NQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDG 601 (898)
T ss_pred ccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCc
Confidence 111677999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CcHHHHHHHHHHHHcCCCCcceeeCCCCCCCcchhhhccc
Q 005179 670 VGKTELAKSLAACYFGSVRIHYLFFPSPFNSVKVALSRQI 709 (710)
Q Consensus 670 tGKT~lAkaLA~~lfg~~~~li~~d~se~~~~~~~~~~~~ 709 (710)
||||+|||+||++|||++++|||+|||||+. +|++|
T Consensus 602 vGKt~lAkaLA~~~Fgse~~~IriDmse~~e----vskli 637 (898)
T KOG1051|consen 602 VGKTELAKALAEYVFGSEENFIRLDMSEFQE----VSKLI 637 (898)
T ss_pred hhHHHHHHHHHHHHcCCccceEEechhhhhh----hhhcc
Confidence 9999999999999999999999999999987 77765
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-37 Score=331.09 Aligned_cols=358 Identities=19% Similarity=0.267 Sum_probs=245.6
Q ss_pred cCCCCcccCHHHHHHHHHHHHc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
-+|.++-|.+..+..|++++.. ..++++||+||||||||.||+++|.++ +.+++.+..
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isA 256 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISA 256 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecc
Confidence 3588899999999888876432 456789999999999999999999999 888999999
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc--------CCCeEE
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--------RGELQC 426 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--------~~~v~v 426 (710)
..++.| +.|+.|++++++|+++....|+|+||||||.+.+++... +++....+...|...|. ...++|
T Consensus 257 peivSG--vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlV 332 (802)
T KOG0733|consen 257 PEIVSG--VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLV 332 (802)
T ss_pred hhhhcc--cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH--HHHHHHHHHHHHHHhhhcccccccCCCCeEE
Confidence 999966 579999999999999999999999999999997765431 12334445555555443 246899
Q ss_pred EEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHhhhhhcCCCC
Q 005179 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRYL 502 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~-~~l~~l~~ls~~~i~~r~~ 502 (710)
||+||.++ .+||+|+| ||+ .|.+..|+..+|.+||+.+++.+ .++. -....++.++.+|++
T Consensus 333 IgATnRPD-----slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l------rl~g~~d~~qlA~lTPGfVG---- 397 (802)
T KOG0733|consen 333 IGATNRPD-----SLDPALRRAGRFDREICLGVPSETAREEILRIICRGL------RLSGDFDFKQLAKLTPGFVG---- 397 (802)
T ss_pred EecCCCCc-----ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC------CCCCCcCHHHHHhcCCCccc----
Confidence 99999998 89999999 997 89999999999999999999854 2222 235788999999988
Q ss_pred cchHHHHHHHHHhhhhhhhhhchhh--HHhhhhCCCC-hHHHHHHHHHHHhhHHHhhccccchhhhhccCCcchhhhhcc
Q 005179 503 PDKAIDLVDEAGSRAHIELFKRKKE--QQTCILSKPP-DDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESS 579 (710)
Q Consensus 503 p~~ai~ll~~a~~~~~~~~~~~~~~--~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (710)
.+...|+.+|+..+--+....... .+...-.... .+...+...+..... ...+...+.-+.....
T Consensus 398 -ADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~-----------~~~~~~ld~v~~~~i~ 465 (802)
T KOG0733|consen 398 -ADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSN-----------AERPLELDRVVQDAIL 465 (802)
T ss_pred -hhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCc-----------ccccccHHHHHHHHHH
Confidence 445666766664443332221110 0000000000 000001101100000 0000000000000000
Q ss_pred ---CCCCCCCCCCCcCCHHHHHHHHHhhh-------CCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhh
Q 005179 580 ---LPSASDDDEPAVVGPDDIAAVASLWS-------GIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSR 649 (710)
Q Consensus 580 ---~~~~~~~~~~~~v~~~di~~~~s~~~-------gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r 649 (710)
.+..........|..+|+..+++..- -+.+..++|++++.+.+++.+|...|.+. |.++-.+.+
T Consensus 466 ~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~P------iK~pd~~k~ 539 (802)
T KOG0733|consen 466 NNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAP------IKRPDLFKA 539 (802)
T ss_pred hCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhh------ccCHHHHHH
Confidence 00001112346789999999886532 12344899999999999999888555433 555557778
Q ss_pred cCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 650 VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 650 ~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.|+..| +|+|||||||||||+||||+|++ ++-++|.+-..|+
T Consensus 540 lGi~~P----sGvLL~GPPGCGKTLlAKAVANE---ag~NFisVKGPEL 581 (802)
T KOG0733|consen 540 LGIDAP----SGVLLCGPPGCGKTLLAKAVANE---AGANFISVKGPEL 581 (802)
T ss_pred hCCCCC----CceEEeCCCCccHHHHHHHHhhh---ccCceEeecCHHH
Confidence 899887 89999999999999999999999 8888888876554
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.7e-31 Score=285.13 Aligned_cols=280 Identities=23% Similarity=0.286 Sum_probs=210.3
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcC-CeEE
Q 005179 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG-DVIL 386 (710)
Q Consensus 308 ~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~-~~IL 386 (710)
.+.+.++|+|||||+|||.+++++|++. +..++.++...++ .++.|+.+..++..|+++.+.. |+++
T Consensus 215 ~~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~peli--~k~~gEte~~LR~~f~~a~k~~~psii 282 (693)
T KOG0730|consen 215 IKPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPELI--SKFPGETESNLRKAFAEALKFQVPSII 282 (693)
T ss_pred CCCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHHHH--HhcccchHHHHHHHHHHHhccCCCeeE
Confidence 3566889999999999999999999998 7889999999888 5678999999999999999888 9999
Q ss_pred EEccchhhhhCCCCCCCCCCChHhHHHhhcccc----cCCCeEEEEccChHHHHhhhhccHHHHc-ccc-ceEecCCCHH
Q 005179 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL----GRGELQCIASTTQDEHRTQFEKDKALAR-RFQ-PVLISEPSQE 460 (710)
Q Consensus 387 ~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l----~~~~v~vI~att~~~~~~~~~~d~aL~~-Rf~-~I~v~~Ps~~ 460 (710)
||||+|.+++...... .....+...|..++ ..++++||++|+.+. .+|++++| ||+ .+.+..|+..
T Consensus 283 ~IdEld~l~p~r~~~~---~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~-----sld~alRRgRfd~ev~IgiP~~~ 354 (693)
T KOG0730|consen 283 FIDELDALCPKREGAD---DVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD-----SLDPALRRGRFDREVEIGIPGSD 354 (693)
T ss_pred eHHhHhhhCCcccccc---hHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc-----ccChhhhcCCCcceeeecCCCch
Confidence 9999999987643311 11333444443333 357899999999987 89999998 997 8999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhHHhhhhCCCChHH
Q 005179 461 DAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDY 540 (710)
Q Consensus 461 ~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 540 (710)
+|.+|++.+..++ +.. ++..+..++..+++|++ .+...++.+|...+..+
T Consensus 355 ~RldIl~~l~k~~----~~~-~~~~l~~iA~~thGyvG-----aDL~~l~~ea~~~~~r~-------------------- 404 (693)
T KOG0730|consen 355 GRLDILRVLTKKM----NLL-SDVDLEDIAVSTHGYVG-----ADLAALCREASLQATRR-------------------- 404 (693)
T ss_pred hHHHHHHHHHHhc----CCc-chhhHHHHHHHccchhH-----HHHHHHHHHHHHHHhhh--------------------
Confidence 9999999888754 333 56778899999999987 44555666554222111
Q ss_pred HHHHHHHHHhhHHHhhccccchhhhhccCCcchhhhhccCCCCCCCCCCCcCCHHHHHHHHHhhhCCChhhccHHHHHHH
Q 005179 541 WQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLL 620 (710)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~s~~~gip~~~~~~~~~~~l 620 (710)
.++++..+ ...+.+..+++.+ ++..+++|++++++
T Consensus 405 --------~~~~~~~A--------------------------------~~~i~psa~Re~~-----ve~p~v~W~dIGGl 439 (693)
T KOG0730|consen 405 --------TLEIFQEA--------------------------------LMGIRPSALREIL-----VEMPNVSWDDIGGL 439 (693)
T ss_pred --------hHHHHHHH--------------------------------HhcCCchhhhhee-----ccCCCCChhhccCH
Confidence 00000000 0223344444433 56669999999999
Q ss_pred HHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCC
Q 005179 621 VGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFP 695 (710)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~ 695 (710)
.++++.|.+.|.|. +....++.+.|+++| .|+|||||||||||++|||||++ +.-+++.+-.
T Consensus 440 E~lK~elq~~V~~p------~~~pe~F~r~Gi~pp----kGVLlyGPPGC~KT~lAkalAne---~~~nFlsvkg 501 (693)
T KOG0730|consen 440 EELKRELQQAVEWP------LKHPEKFARFGISPP----KGVLLYGPPGCGKTLLAKALANE---AGMNFLSVKG 501 (693)
T ss_pred HHHHHHHHHHHhhh------hhchHHHHHhcCCCC----ceEEEECCCCcchHHHHHHHhhh---hcCCeeeccC
Confidence 99988777555444 444456788898776 79999999999999999999999 6667777643
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1.6e-26 Score=271.98 Aligned_cols=320 Identities=21% Similarity=0.304 Sum_probs=207.8
Q ss_pred cCCCCcccCHHHHHHHHHHHHc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~-------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-+|++++|.+++++++.+.+.. ..+.++||+||||||||++++++|..+ +..++.++
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i~ 244 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISIN 244 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEe
Confidence 4678899999999888776532 345689999999999999999999988 66778888
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc----cCCCeEEEEc
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL----GRGELQCIAS 429 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l----~~~~v~vI~a 429 (710)
...+. .++.|+.+..++.+|+.+....+.||||||+|.+........+ .....+.+.|..++ .++.+++|++
T Consensus 245 ~~~i~--~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~--~~~~~~~~~Ll~~ld~l~~~~~vivI~a 320 (733)
T TIGR01243 245 GPEIM--SKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG--EVEKRVVAQLLTLMDGLKGRGRVIVIGA 320 (733)
T ss_pred cHHHh--cccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcc--hHHHHHHHHHHHHhhccccCCCEEEEee
Confidence 77776 4567888889999999998888999999999999865432111 11233444444444 4578899999
Q ss_pred cChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHhhhhhcCCCCcch
Q 005179 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYISDRYLPDK 505 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~-~~~l~~l~~ls~~~i~~r~~p~~ 505 (710)
||..+ .+|+++.+ ||+ .|.++.|+.++|.+||+.... ++.+. +..++.++..+.+|.. .+
T Consensus 321 tn~~~-----~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~------~~~l~~d~~l~~la~~t~G~~g-----ad 384 (733)
T TIGR01243 321 TNRPD-----ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR------NMPLAEDVDLDKLAEVTHGFVG-----AD 384 (733)
T ss_pred cCChh-----hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc------CCCCccccCHHHHHHhCCCCCH-----HH
Confidence 99876 68999988 897 799999999999999995543 23332 3346778888877754 23
Q ss_pred HHHHHHHHHhhhhhhhhhchhhHHhhhhCCCChHHHHHHHHHHHhhHHHhhccccchhhhhccCCcchhhhhccCCCCCC
Q 005179 506 AIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASD 585 (710)
Q Consensus 506 ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (710)
...+...++..+..+..... +..-....++ ..
T Consensus 385 l~~l~~~a~~~al~r~~~~~--------------------------------~~~~~~~~i~----------------~~ 416 (733)
T TIGR01243 385 LAALAKEAAMAALRRFIREG--------------------------------KINFEAEEIP----------------AE 416 (733)
T ss_pred HHHHHHHHHHHHHHHHhhcc--------------------------------cccccccccc----------------ch
Confidence 33444444422211100000 0000000000 00
Q ss_pred CCCCCcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHH--------hhcCCCCCCC
Q 005179 586 DDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKR--------SRVGLKDPNR 657 (710)
Q Consensus 586 ~~~~~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~--------~r~gl~~p~r 657 (710)
......++.+|+..++.....-... ..+.+....-+..|+|++++++.+...+.+ .+.|+..|
T Consensus 417 ~~~~~~v~~~df~~Al~~v~ps~~~-------~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~-- 487 (733)
T TIGR01243 417 VLKELKVTMKDFMEALKMVEPSAIR-------EVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPP-- 487 (733)
T ss_pred hcccccccHHHHHHHHhhccccccc-------hhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCC--
Confidence 0012346667776666433211100 000111112223377777777776665532 33455443
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 658 PTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 658 p~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.++|||||||||||++|+++|+++ ..+++.++.+++
T Consensus 488 --~giLL~GppGtGKT~lakalA~e~---~~~fi~v~~~~l 523 (733)
T TIGR01243 488 --KGVLLFGPPGTGKTLLAKAVATES---GANFIAVRGPEI 523 (733)
T ss_pred --ceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHH
Confidence 689999999999999999999994 467888888765
No 12
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-25 Score=243.31 Aligned_cols=295 Identities=18% Similarity=0.223 Sum_probs=202.0
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEE
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFI 388 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~I 388 (710)
....|+||+||+|+|||.|++++++++.... .+++..++++.+-. .+ ...+...+..+|.++....|+|+++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~------~~hv~~v~Cs~l~~-~~-~e~iQk~l~~vfse~~~~~PSiIvL 500 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDL------IAHVEIVSCSTLDG-SS-LEKIQKFLNNVFSEALWYAPSIIVL 500 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhcccc------ceEEEEEechhccc-hh-HHHHHHHHHHHHHHHHhhCCcEEEE
Confidence 3567899999999999999999999985322 56777888877652 22 4456677888888888899999999
Q ss_pred ccchhhhhCCCCCCCCCC-ChHhHH----HhhcccccCCC-eEEEEccChHHHHhhhhccHHHHc--ccc-ceEecCCCH
Q 005179 389 DEVHTLIGSGTVGRGNKG-TGLDIS----NLLKPSLGRGE-LQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQ 459 (710)
Q Consensus 389 DEid~l~~~~~~~~~~~~-~~~~~~----~~L~~~l~~~~-v~vI~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~ 459 (710)
||+|.|++......+..+ ...... +.++.++.++. +.+|++....+ .+++.|.+ +|+ ++.++.|..
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q-----tl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ-----TLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh-----hcChhhcCccceEEEEecCCcch
Confidence 999999883222111111 111122 23344555554 57888776644 67777776 777 899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhHHhhhhCCCChH
Q 005179 460 EDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD 539 (710)
Q Consensus 460 ~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 539 (710)
.+|.+||..++.+- ...+..+.++.+...+.+|.. .+..-++++|...+.+....
T Consensus 576 ~~R~~IL~~~~s~~----~~~~~~~dLd~ls~~TEGy~~-----~DL~ifVeRai~~a~leris---------------- 630 (952)
T KOG0735|consen 576 TRRKEILTTIFSKN----LSDITMDDLDFLSVKTEGYLA-----TDLVIFVERAIHEAFLERIS---------------- 630 (952)
T ss_pred hHHHHHHHHHHHhh----hhhhhhHHHHHHHHhcCCccc-----hhHHHHHHHHHHHHHHHHhc----------------
Confidence 99999999988743 234566667778888888865 45566777776443321110
Q ss_pred HHHHHHHHHHhhHHHhhccccchhhhhccCCcchhhhhccCCCCCCCCCCCcCCHHHHHHHHHhhhCCChhhccHHHHHH
Q 005179 540 YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERML 619 (710)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~s~~~gip~~~~~~~~~~~ 619 (710)
..+..++.+++...++.++......++.....+
T Consensus 631 -----------------------------------------------~~~klltke~f~ksL~~F~P~aLR~ik~~k~tg 663 (952)
T KOG0735|consen 631 -----------------------------------------------NGPKLLTKELFEKSLKDFVPLALRGIKLVKSTG 663 (952)
T ss_pred -----------------------------------------------cCcccchHHHHHHHHHhcChHHhhhccccccCC
Confidence 112367888888888877655444443322211
Q ss_pred HHHHHHHhhCcccChHHHHHHHHH----HHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCC
Q 005179 620 LVGLEEQLKKRVIGQDEAVAAISR----AVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFP 695 (710)
Q Consensus 620 l~~l~~~L~~~v~Gq~~a~~~i~~----~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~ 695 (710)
..+ +.|+|..++++.+.+ +.+|.....+.|-|...|+|||||||||||.||.|+|.. ..-++|.+..
T Consensus 664 -i~w-----~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~---~~~~fisvKG 734 (952)
T KOG0735|consen 664 -IRW-----EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN---SNLRFISVKG 734 (952)
T ss_pred -CCc-----eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhh---CCeeEEEecC
Confidence 112 225666666555544 447788888889888899999999999999999999988 5556666665
Q ss_pred CC
Q 005179 696 SP 697 (710)
Q Consensus 696 se 697 (710)
.|
T Consensus 735 PE 736 (952)
T KOG0735|consen 735 PE 736 (952)
T ss_pred HH
Confidence 44
No 13
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-24 Score=237.48 Aligned_cols=298 Identities=18% Similarity=0.273 Sum_probs=192.5
Q ss_pred CcccCHHHHHHHHHHHHcCCC---------CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcc
Q 005179 291 PVIGRETEIQRIIQILCRRTK---------NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~~~---------~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~ 361 (710)
...+++..+..++.++..+.. ..+||+|+||||||++++++|.++ +.+++++|+.++.+.
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~- 470 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAE- 470 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhc-
Confidence 345667677778887765322 347999999999999999999999 999999999999854
Q ss_pred ccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-------CCCeEEEEccChHH
Q 005179 362 KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCIASTTQDE 434 (710)
Q Consensus 362 ~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v~vI~att~~~ 434 (710)
..+..+..+..++..++...|.|||+-++|.+...... +....++..+...++ .+.+++|++++..+
T Consensus 471 -s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-----ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~ 544 (953)
T KOG0736|consen 471 -SASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-----GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE 544 (953)
T ss_pred -ccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-----chhHHHHHHHHHHHhcccccCCCCceEEEEeccccc
Confidence 35677888999999999999999999999998532111 223334444444333 45788999988876
Q ss_pred HHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHhhhhhcCCCCcchHHHHHHH
Q 005179 435 HRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRYLPDKAIDLVDE 512 (710)
Q Consensus 435 ~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~-~~l~~l~~ls~~~i~~r~~p~~ai~ll~~ 512 (710)
.+.+.+.+-|- .|.++.|+.+||.+||+.+.... .+.. ..+..++..+.+|.. .+.-.++..
T Consensus 545 -----~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~------~~n~~v~~k~~a~~t~gfs~-----~~L~~l~~~ 608 (953)
T KOG0736|consen 545 -----DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHL------PLNQDVNLKQLARKTSGFSF-----GDLEALVAH 608 (953)
T ss_pred -----cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcc------ccchHHHHHHHHHhcCCCCH-----HHHHHHhcC
Confidence 78899999774 89999999999999999877633 2333 335566666665533 222223222
Q ss_pred HHhhhhhhhhhchhhHHhhhhCCCChHHHHHHHHHHHhhHHHhhccccchhhhhccCCcchhhhhccCCCCCCCCCCCcC
Q 005179 513 AGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVV 592 (710)
Q Consensus 513 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 592 (710)
....+... ..+...++.+... .. .........+
T Consensus 609 ~s~~~~~~-----------------------------i~~~~l~g~~~~~-------~~-----------~~~~~~~~~l 641 (953)
T KOG0736|consen 609 SSLAAKTR-----------------------------IKNKGLAGGLQEE-------DE-----------GELCAAGFLL 641 (953)
T ss_pred chHHHHHH-----------------------------HHhhcccccchhc-------cc-----------ccccccccee
Confidence 20000000 0000000000000 00 0001112567
Q ss_pred CHHHHHHHHHh-------hhCCC-hhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHh---hcCCCCCCCCCeE
Q 005179 593 GPDDIAAVASL-------WSGIP-VQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRS---RVGLKDPNRPTAA 661 (710)
Q Consensus 593 ~~~di~~~~s~-------~~gip-~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~---r~gl~~p~rp~~~ 661 (710)
+.+|+..++++ -.|.| +.+++|+|++++.+++. ++.++|..+++.. -.|++ +.+|
T Consensus 642 ~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~----------eIldTIqlPL~hpeLfssglr----kRSG 707 (953)
T KOG0736|consen 642 TEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKT----------EILDTIQLPLKHPELFSSGLR----KRSG 707 (953)
T ss_pred cHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHH----------HHHHHhcCcccChhhhhcccc----ccce
Confidence 78888877763 33544 45889998555554444 2223333333332 33554 3489
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 005179 662 MLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 662 ~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
+|||||||||||++|||+|.+
T Consensus 708 ILLYGPPGTGKTLlAKAVATE 728 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATE 728 (953)
T ss_pred eEEECCCCCchHHHHHHHHhh
Confidence 999999999999999999998
No 14
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.7e-22 Score=205.70 Aligned_cols=199 Identities=22% Similarity=0.296 Sum_probs=161.2
Q ss_pred cCCCCcccCHHHHHHHHHHHH-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~-------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-+++++-|-+++++.+.+.+. -..+.++|||||||||||.||+++|+.. ++.++.+.
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvv 217 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVV 217 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEec
Confidence 357788999999998888643 2456789999999999999999999988 88899998
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-------CCCeEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQC 426 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v~v 426 (710)
.+.++ .+|.|+-...++++|.-++...|+|+||||||.+...+.... .++..+++..+.++|. ++++.|
T Consensus 218 gSElV--qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~--t~gDrEVQRTmleLL~qlDGFD~~~nvKV 293 (406)
T COG1222 218 GSELV--QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG--TSGDREVQRTMLELLNQLDGFDPRGNVKV 293 (406)
T ss_pred cHHHH--HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCC--CCchHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 99998 688999889999999999999999999999999976543322 2557778877777664 589999
Q ss_pred EEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHhhhhhcCCCC
Q 005179 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYL 502 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~-l~~l~~ls~~~i~~r~~ 502 (710)
|++||..+ -+||+|.| ||+ .|+|+.|+.+.|.+||+-..++. ++.+++ ++.++..+.++.+
T Consensus 294 I~ATNR~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM------~l~~dvd~e~la~~~~g~sG---- 358 (406)
T COG1222 294 IMATNRPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM------NLADDVDLELLARLTEGFSG---- 358 (406)
T ss_pred EEecCCcc-----ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc------cCccCcCHHHHHHhcCCCch----
Confidence 99999987 79999999 998 89999999999999999887754 444432 6677777766543
Q ss_pred cchHHHHHHHHHh
Q 005179 503 PDKAIDLVDEAGS 515 (710)
Q Consensus 503 p~~ai~ll~~a~~ 515 (710)
.+...++.+|+.
T Consensus 359 -AdlkaictEAGm 370 (406)
T COG1222 359 -ADLKAICTEAGM 370 (406)
T ss_pred -HHHHHHHHHHhH
Confidence 344455666653
No 15
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.2e-21 Score=204.88 Aligned_cols=311 Identities=22% Similarity=0.233 Sum_probs=194.8
Q ss_pred HHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh-----
Q 005179 306 LCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----- 380 (710)
Q Consensus 306 L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----- 380 (710)
|....-.++|||||||||||.+|+.|...+. ..-|... +...+. .+|.|+.|+.++.+|..+++
T Consensus 251 lGi~HVKGiLLyGPPGTGKTLiARqIGkMLN-ArePKIV--------NGPeIL--~KYVGeSE~NvR~LFaDAEeE~r~~ 319 (744)
T KOG0741|consen 251 LGIKHVKGILLYGPPGTGKTLIARQIGKMLN-AREPKIV--------NGPEIL--NKYVGESEENVRKLFADAEEEQRRL 319 (744)
T ss_pred cCccceeeEEEECCCCCChhHHHHHHHHHhc-CCCCccc--------CcHHHH--HHhhcccHHHHHHHHHhHHHHHHhh
Confidence 3334456789999999999999999998873 3333332 333444 67899999999999988864
Q ss_pred ---cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC----CCeEEEEccChHHHHhhhhccHHHHc--ccc-
Q 005179 381 ---SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR----GELQCIASTTQDEHRTQFEKDKALAR--RFQ- 450 (710)
Q Consensus 381 ---~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~----~~v~vI~att~~~~~~~~~~d~aL~~--Rf~- 450 (710)
++--|+++||||.+|..+.+..++.+-...+.|.|+.-+.. +++.|||.||+.+ -+|.+|.| ||+
T Consensus 320 g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~D-----lIDEALLRPGRlEV 394 (744)
T KOG0741|consen 320 GANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKD-----LIDEALLRPGRLEV 394 (744)
T ss_pred CccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchh-----hHHHHhcCCCceEE
Confidence 23468889999999986544344345556677777766652 6899999999987 68999999 997
Q ss_pred ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhHHh
Q 005179 451 PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQT 530 (710)
Q Consensus 451 ~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~ 530 (710)
.+++..|+..-|.+||+-...+...+ +.--++-.++.++.++..|.+ ...-.++..|.+.+..+.-.....
T Consensus 395 qmEIsLPDE~gRlQIl~IHT~rMre~-~~l~~dVdl~elA~lTKNfSG-----AEleglVksA~S~A~nR~vk~~~~--- 465 (744)
T KOG0741|consen 395 QMEISLPDEKGRLQILKIHTKRMREN-NKLSADVDLKELAALTKNFSG-----AELEGLVKSAQSFAMNRHVKAGGK--- 465 (744)
T ss_pred EEEEeCCCccCceEEEEhhhhhhhhc-CCCCCCcCHHHHHHHhcCCch-----hHHHHHHHHHHHHHHHhhhccCcc---
Confidence 79999999999999999776665433 222233347788888888754 333445555543322211100000
Q ss_pred hhhCCCChHHHHHHHHHHHhhHHHhhccccchhhhhccCCcchhhhhccCCCCCCCCCCCcCCHHHHHHHHHhhhCCChh
Q 005179 531 CILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQ 610 (710)
Q Consensus 531 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~s~~~gip~~ 610 (710)
........+...|+.+|+..+++... |.-
T Consensus 466 -------------------------------------------------~~~~~~~~e~lkV~r~DFl~aL~dVk--PAF 494 (744)
T KOG0741|consen 466 -------------------------------------------------VEVDPVAIENLKVTRGDFLNALEDVK--PAF 494 (744)
T ss_pred -------------------------------------------------eecCchhhhheeecHHHHHHHHHhcC--ccc
Confidence 00011122345778888877776432 111
Q ss_pred hccHHHHHHHHHHHHHhhCc-ccChHHHHHHHHHHHHHhhcCCCCC-CCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCC
Q 005179 611 QITADERMLLVGLEEQLKKR-VIGQDEAVAAISRAVKRSRVGLKDP-NRPTAAMLFCGPTGVGKTELAKSLAACYFGSVR 688 (710)
Q Consensus 611 ~~~~~~~~~l~~l~~~L~~~-v~Gq~~a~~~i~~~i~~~r~gl~~p-~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~ 688 (710)
.++..+ +++.+..- +.|-..+-.-+.+...+.. ..+.+ ..|.-++||.||||+|||.||-.+|.. ++-
T Consensus 495 G~see~------l~~~~~~Gmi~~g~~v~~il~~G~llv~-qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~---S~F 564 (744)
T KOG0741|consen 495 GISEED------LERFVMNGMINWGPPVTRILDDGKLLVQ-QVKNSERSPLVSVLLEGPPGSGKTALAAKIALS---SDF 564 (744)
T ss_pred CCCHHH------HHHHHhCCceeecccHHHHHhhHHHHHH-HhhccccCcceEEEEecCCCCChHHHHHHHHhh---cCC
Confidence 222222 22222221 2222222222222222221 22333 335679999999999999999999987 776
Q ss_pred cceeeC-------CCCCCCcc
Q 005179 689 IHYLFF-------PSPFNSVK 702 (710)
Q Consensus 689 ~li~~d-------~se~~~~~ 702 (710)
++|++- |||+..+.
T Consensus 565 PFvKiiSpe~miG~sEsaKc~ 585 (744)
T KOG0741|consen 565 PFVKIISPEDMIGLSESAKCA 585 (744)
T ss_pred CeEEEeChHHccCccHHHHHH
Confidence 677653 56664443
No 16
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.86 E-value=2.8e-21 Score=200.09 Aligned_cols=197 Identities=26% Similarity=0.348 Sum_probs=154.9
Q ss_pred hhhHHhhhhcCCCCcccCHHHH---HHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 278 VDLTARASEELIDPVIGRETEI---QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i---~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
.+|...+||.+|+++||+++.+ .-+..++....-.+.+|||||||||||+|+.||+.. +..+..++
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~s- 80 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALS- 80 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEec-
Confidence 3788999999999999999877 346666777788999999999999999999999988 67777654
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEcc
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at 430 (710)
....|.+ .++.+++++++ ....||||||||++ +..-++.|++.+++|.+++||+|
T Consensus 81 -Av~~gvk-------dlr~i~e~a~~~~~~gr~tiLflDEIHRf-------------nK~QQD~lLp~vE~G~iilIGAT 139 (436)
T COG2256 81 -AVTSGVK-------DLREIIEEARKNRLLGRRTILFLDEIHRF-------------NKAQQDALLPHVENGTIILIGAT 139 (436)
T ss_pred -cccccHH-------HHHHHHHHHHHHHhcCCceEEEEehhhhc-------------ChhhhhhhhhhhcCCeEEEEecc
Confidence 3333332 37777777743 33689999999999 34457899999999999999999
Q ss_pred ChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHhhhhhcCCCCcchHH
Q 005179 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH---HNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (710)
Q Consensus 431 t~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~---~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai 507 (710)
|.++ +|+++++|++|+..+.+.+.+.++..++|+..+...+.. ..+.+++++++.++..+.+-. +.++
T Consensus 140 TENP---sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~------R~aL 210 (436)
T COG2256 140 TENP---SFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA------RRAL 210 (436)
T ss_pred CCCC---CeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH------HHHH
Confidence 9986 789999999999999999999999999888744333221 124589999999999877642 2345
Q ss_pred HHHHHHHh
Q 005179 508 DLVDEAGS 515 (710)
Q Consensus 508 ~ll~~a~~ 515 (710)
.+++.+..
T Consensus 211 N~LE~~~~ 218 (436)
T COG2256 211 NLLELAAL 218 (436)
T ss_pred HHHHHHHH
Confidence 55555443
No 17
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.85 E-value=1.1e-20 Score=183.75 Aligned_cols=194 Identities=23% Similarity=0.308 Sum_probs=149.3
Q ss_pred HhhhhcCCCCcccCHHHHHHHH---HHHH------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe
Q 005179 282 ARASEELIDPVIGRETEIQRII---QILC------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (710)
Q Consensus 282 ~~~~~~~l~~liGr~~~i~~l~---~~L~------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l 352 (710)
+..+.-+|+++||+++..+.+. +.|. ...+.|+|+|||||||||++|+++|.+. +.+++.+
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----------kvp~l~v 182 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----------KVPLLLV 182 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----------CCceEEe
Confidence 3445667999999997765543 3332 2457899999999999999999999988 6677777
Q ss_pred ehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc----CCCeEEEE
Q 005179 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIA 428 (710)
Q Consensus 353 d~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~ 428 (710)
....++ ..+.|+-..+++++++.+++..|||+||||+|.+.-...... -.+...++.|.|+.-|. +..++.|+
T Consensus 183 kat~li--GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe-lRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 183 KATELI--GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE-LRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred chHHHH--HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH-hcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 777777 457788889999999999999999999999999854332211 12234566777765553 45789999
Q ss_pred ccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q 005179 429 STTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~ 498 (710)
+||.++ -+|+++++||. .|+|..|+.++|..||+...+++ .+.+.-. ++.++..+.++.+
T Consensus 260 aTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~----Plpv~~~-~~~~~~~t~g~Sg 320 (368)
T COG1223 260 ATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF----PLPVDAD-LRYLAAKTKGMSG 320 (368)
T ss_pred ecCChh-----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC----CCccccC-HHHHHHHhCCCCc
Confidence 999988 78999999997 89999999999999999877755 3444333 6777777777644
No 18
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=8.1e-20 Score=199.26 Aligned_cols=200 Identities=22% Similarity=0.295 Sum_probs=159.3
Q ss_pred cCCCCcccCHHHHHHHHHHH-------------HcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L-------------~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-.|+++-|.++..+.+.+.+ .-..+..||||||||||||++|+++|.+. ++.++++.
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsvk 500 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSVK 500 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeecc
Confidence 35667777776555555432 22456789999999999999999999998 88899998
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc----CCCeEEEEc
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAS 429 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~a 429 (710)
...++ ++|.|+.|..++++|+.+++..|+|+|+||||.+.+.+..+.+ +....+.+.|+..|. ..++.||++
T Consensus 501 gpEL~--sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~--~v~~RVlsqLLtEmDG~e~~k~V~ViAA 576 (693)
T KOG0730|consen 501 GPELF--SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS--GVTDRVLSQLLTEMDGLEALKNVLVIAA 576 (693)
T ss_pred CHHHH--HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc--chHHHHHHHHHHHcccccccCcEEEEec
Confidence 88888 6899999999999999999999999999999999887652211 223445555555443 458999999
Q ss_pred cChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHHhhhhhcCCCCcch
Q 005179 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLPDK 505 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~-~l~~l~~ls~~~i~~r~~p~~ 505 (710)
||.++ .+|++|.| ||+ .|+|+.|+.+.|.+||+...+ ++.+.++ .++.+++.+.+|.+ .+
T Consensus 577 TNRpd-----~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k------kmp~~~~vdl~~La~~T~g~SG-----Ae 640 (693)
T KOG0730|consen 577 TNRPD-----MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK------KMPFSEDVDLEELAQATEGYSG-----AE 640 (693)
T ss_pred cCChh-----hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh------cCCCCccccHHHHHHHhccCCh-----HH
Confidence 99997 89999999 998 899999999999999997766 4566666 57889998888855 56
Q ss_pred HHHHHHHHHhh
Q 005179 506 AIDLVDEAGSR 516 (710)
Q Consensus 506 ai~ll~~a~~~ 516 (710)
...++.+|+..
T Consensus 641 l~~lCq~A~~~ 651 (693)
T KOG0730|consen 641 IVAVCQEAALL 651 (693)
T ss_pred HHHHHHHHHHH
Confidence 67788888743
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.5e-19 Score=183.68 Aligned_cols=203 Identities=20% Similarity=0.263 Sum_probs=149.8
Q ss_pred hhcCCCCcccCHHHHHHHHHHHH------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe
Q 005179 285 SEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (710)
Q Consensus 285 ~~~~l~~liGr~~~i~~l~~~L~------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l 352 (710)
..-+++++.|..+..+-|.+.+- ++.=..+|++||||||||.||+++|.++ +..++.+
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNV 276 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNV 276 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEe
Confidence 33478899999987777666431 1222579999999999999999999998 7777777
Q ss_pred ehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-------CCC-e
Q 005179 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGE-L 424 (710)
Q Consensus 353 d~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~-v 424 (710)
..+.+. ++++|+.|+.++-+|+.++...|++|||||||.|+..+... +..+.+..+.+-|+-.|. +.+ |
T Consensus 277 Ssstlt--SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQmDG~~~t~e~~k~V 353 (491)
T KOG0738|consen 277 SSSTLT--SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQMDGVQGTLENSKVV 353 (491)
T ss_pred chhhhh--hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHHhhccccccccceeE
Confidence 666666 78999999999999999999999999999999998764331 223344445444433332 223 5
Q ss_pred EEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 005179 425 QCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (710)
Q Consensus 425 ~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p 503 (710)
.|+++||.+- ++|.+|+|||. .|.|+.|+.+.|..+|+..++..+.. ++-.++.+++.+.+|.+
T Consensus 354 mVLAATN~PW-----diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-----~~~~~~~lae~~eGySG----- 418 (491)
T KOG0738|consen 354 MVLAATNFPW-----DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELD-----DPVNLEDLAERSEGYSG----- 418 (491)
T ss_pred EEEeccCCCc-----chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCC-----CCccHHHHHHHhcCCCh-----
Confidence 5666677653 89999999998 89999999999999999877643222 22336778888888865
Q ss_pred chHHHHHHHHHh
Q 005179 504 DKAIDLVDEAGS 515 (710)
Q Consensus 504 ~~ai~ll~~a~~ 515 (710)
++...++.+|..
T Consensus 419 aDI~nvCreAsm 430 (491)
T KOG0738|consen 419 ADITNVCREASM 430 (491)
T ss_pred HHHHHHHHHHHH
Confidence 445556666543
No 20
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.81 E-value=9.9e-19 Score=193.61 Aligned_cols=202 Identities=21% Similarity=0.273 Sum_probs=149.3
Q ss_pred cCCCCcccCHHHHHHHHHHH----------HcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh
Q 005179 287 ELIDPVIGRETEIQRIIQIL----------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L----------~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~ 356 (710)
.+|+++.|.+...+.+.+.. ....+.++||+||||||||.+|+++|..+ +..++.++++.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~ 294 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGK 294 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHH
Confidence 35677888776665554421 11345789999999999999999999998 78899999988
Q ss_pred hhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc--CCCeEEEEccChHH
Q 005179 357 LMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQDE 434 (710)
Q Consensus 357 l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~att~~~ 434 (710)
+. .++.|+.+.+++.+|..++...|+||||||||.++..... .++.+....+.+.|...+. +..+.+|+|||..+
T Consensus 295 l~--~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~-~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~ 371 (489)
T CHL00195 295 LF--GGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES-KGDSGTTNRVLATFITWLSEKKSPVFVVATANNID 371 (489)
T ss_pred hc--ccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC-CCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence 77 4578889999999999999889999999999998764221 1111223344444544444 45688999999876
Q ss_pred HHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHH
Q 005179 435 HRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (710)
Q Consensus 435 ~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~ 511 (710)
.+|+++.| ||+ .|.|+.|+.++|.+||+.++.+.. .....+..++.++..+.+|.+ .+...++.
T Consensus 372 -----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~---~~~~~~~dl~~La~~T~GfSG-----AdI~~lv~ 438 (489)
T CHL00195 372 -----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR---PKSWKKYDIKKLSKLSNKFSG-----AEIEQSII 438 (489)
T ss_pred -----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC---CCcccccCHHHHHhhcCCCCH-----HHHHHHHH
Confidence 79999998 998 899999999999999998887542 112234457788888888755 34444555
Q ss_pred HHH
Q 005179 512 EAG 514 (710)
Q Consensus 512 ~a~ 514 (710)
+|+
T Consensus 439 eA~ 441 (489)
T CHL00195 439 EAM 441 (489)
T ss_pred HHH
Confidence 544
No 21
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.7e-19 Score=192.48 Aligned_cols=202 Identities=23% Similarity=0.339 Sum_probs=151.3
Q ss_pred cCCCCcccCHHHHHHHHHHHHc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
-+++++-|-++....+.+.+.- +...++|||||||||||.+|+++|.++ ...++++..
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKG 738 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKG 738 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecC
Confidence 3688998988777777765432 235689999999999999999999998 677888888
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHh--HHHhhcc--ccc---CCCeEEE
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD--ISNLLKP--SLG---RGELQCI 427 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~--~~~~L~~--~l~---~~~v~vI 427 (710)
.+++ ..|.|+.|+.++++|+.++.+.|||||+||+|.+.+.+.. .|++++.+| +..+|.+ -|. ...+.||
T Consensus 739 PELL--NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~-sGDSGGVMDRVVSQLLAELDgls~~~s~~VFVi 815 (953)
T KOG0736|consen 739 PELL--NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGR-SGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVI 815 (953)
T ss_pred HHHH--HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCC-CCCccccHHHHHHHHHHHhhcccCCCCCceEEE
Confidence 8888 6799999999999999999999999999999999976432 122344443 3333322 222 3568999
Q ss_pred EccChHHHHhhhhccHHHHc--ccc-ceEecCC-CHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 005179 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEP-SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (710)
Q Consensus 428 ~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~P-s~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p 503 (710)
|+||+++ -+||+|.| ||+ -+++.++ +.+....||+.+.+++....++. +..+++.+.--++ .
T Consensus 816 GATNRPD-----LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd-----L~eiAk~cp~~~T----G 881 (953)
T KOG0736|consen 816 GATNRPD-----LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD-----LVEIAKKCPPNMT----G 881 (953)
T ss_pred ecCCCcc-----ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC-----HHHHHhhCCcCCc----h
Confidence 9999998 78999999 998 6788877 47788999999999885444433 4556666654333 2
Q ss_pred chHHHHHHHHHh
Q 005179 504 DKAIDLVDEAGS 515 (710)
Q Consensus 504 ~~ai~ll~~a~~ 515 (710)
.+...++..|..
T Consensus 882 ADlYsLCSdA~l 893 (953)
T KOG0736|consen 882 ADLYSLCSDAML 893 (953)
T ss_pred hHHHHHHHHHHH
Confidence 445666666543
No 22
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=6.3e-20 Score=179.02 Aligned_cols=189 Identities=21% Similarity=0.305 Sum_probs=126.6
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHHc-----CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~-----~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l 352 (710)
.++.+.+||.+|+++||+++.+..+.-.+.. ..-.++|||||||+||||||+.||+++ +..+..+
T Consensus 12 ~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~~ 81 (233)
T PF05496_consen 12 APLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKIT 81 (233)
T ss_dssp S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEEE
T ss_pred hhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEec
Confidence 3566788999999999999988876544332 123579999999999999999999998 5566554
Q ss_pred ehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCC---------
Q 005179 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE--------- 423 (710)
Q Consensus 353 d~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~--------- 423 (710)
+...+. ..++ +..++..+. .+.||||||||++ +...++.|.+.|+++.
T Consensus 82 sg~~i~----k~~d----l~~il~~l~--~~~ILFIDEIHRl-------------nk~~qe~LlpamEd~~idiiiG~g~ 138 (233)
T PF05496_consen 82 SGPAIE----KAGD----LAAILTNLK--EGDILFIDEIHRL-------------NKAQQEILLPAMEDGKIDIIIGKGP 138 (233)
T ss_dssp ECCC------SCHH----HHHHHHT----TT-EEEECTCCC---------------HHHHHHHHHHHHCSEEEEEBSSSS
T ss_pred cchhhh----hHHH----HHHHHHhcC--CCcEEEEechhhc-------------cHHHHHHHHHHhccCeEEEEecccc
Confidence 432211 1222 334444443 3569999999999 6667889988888653
Q ss_pred -----------eEEEEccChHHHHhhhhccHHHHccccc-eEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005179 424 -----------LQCIASTTQDEHRTQFEKDKALARRFQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (710)
Q Consensus 424 -----------v~vI~att~~~~~~~~~~d~aL~~Rf~~-I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ 491 (710)
+.+||+||... .+.+.|++||.. ..+..++.++..+|++.-.. ..++.+++++...++.
T Consensus 139 ~ar~~~~~l~~FTligATTr~g-----~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~----~l~i~i~~~~~~~Ia~ 209 (233)
T PF05496_consen 139 NARSIRINLPPFTLIGATTRAG-----LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR----ILNIEIDEDAAEEIAR 209 (233)
T ss_dssp S-BEEEEE----EEEEEESSGC-----CTSHCCCTTSSEEEE----THHHHHHHHHHCCH----CTT-EE-HHHHHHHHH
T ss_pred ccceeeccCCCceEeeeecccc-----ccchhHHhhcceecchhcCCHHHHHHHHHHHHH----HhCCCcCHHHHHHHHH
Confidence 55788888875 678999999984 57999999998888875444 5689999999999988
Q ss_pred HhhhhhcCCCCcchHHHHHHHHH
Q 005179 492 LSARYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 492 ls~~~i~~r~~p~~ai~ll~~a~ 514 (710)
.|.+ .|.-|..++..+-
T Consensus 210 rsrG------tPRiAnrll~rvr 226 (233)
T PF05496_consen 210 RSRG------TPRIANRLLRRVR 226 (233)
T ss_dssp CTTT------SHHHHHHHHHHHC
T ss_pred hcCC------ChHHHHHHHHHHH
Confidence 7554 4777888887664
No 23
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=8.1e-19 Score=188.62 Aligned_cols=199 Identities=21% Similarity=0.284 Sum_probs=152.5
Q ss_pred CCCCcccCHHHHHHHHHHH-------------HcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 288 LIDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L-------------~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
+|+++-+.++.-.+|...+ .-..+.++||+||||||||.||+++|++. +..++.+..
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKG 578 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKG 578 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecC
Confidence 4566666555444444332 22456789999999999999999999998 788899988
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc----CCCeEEEEcc
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAST 430 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~at 430 (710)
..|+ .+|.|+.|..++.+|..++.+.|+|+|+||+|.|+..+..+. .+.+..+.|.|+.-|. +..+.||++|
T Consensus 579 PELl--NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~gV~viaAT 654 (802)
T KOG0733|consen 579 PELL--NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRGVYVIAAT 654 (802)
T ss_pred HHHH--HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccceEEEeec
Confidence 8888 689999999999999999999999999999999998755432 2445566777665443 5679999999
Q ss_pred ChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHhh--hhhcCCCCcc
Q 005179 431 TQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSA--RYISDRYLPD 504 (710)
Q Consensus 431 t~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~-l~~l~~ls~--~~i~~r~~p~ 504 (710)
|.++ -+||+++| ||+ .+.|+.|+.++|..||+.+.+. ++..+++++ ++.++.... +|.+ .
T Consensus 655 NRPD-----iIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn----~k~pl~~dVdl~eia~~~~c~gftG-----A 720 (802)
T KOG0733|consen 655 NRPD-----IIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN----TKPPLSSDVDLDEIARNTKCEGFTG-----A 720 (802)
T ss_pred CCCc-----ccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc----CCCCCCcccCHHHHhhcccccCCch-----h
Confidence 9997 78999999 998 7899999999999999988773 344454443 566665544 5544 3
Q ss_pred hHHHHHHHHH
Q 005179 505 KAIDLVDEAG 514 (710)
Q Consensus 505 ~ai~ll~~a~ 514 (710)
+.-.|+.+|.
T Consensus 721 DLaaLvreAs 730 (802)
T KOG0733|consen 721 DLAALVREAS 730 (802)
T ss_pred hHHHHHHHHH
Confidence 4455666654
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.78 E-value=5.4e-18 Score=184.99 Aligned_cols=198 Identities=22% Similarity=0.284 Sum_probs=146.0
Q ss_pred CCCCcccCHHHHHHHHHHHHc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~-------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
.++++.|.+++++.+.+.+.. ..+.++||+||||||||++|+++|..+ +..++.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~~ 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVG 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEeeh
Confidence 467889999999888875421 346789999999999999999999988 667888888
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc-------cCCCeEEE
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGELQCI 427 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l-------~~~~v~vI 427 (710)
+.+. .++.|+.+..++.+|..+....|+||||||+|.+......+.. .+..++...+..++ ..+++.+|
T Consensus 199 ~~l~--~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~--~~~~~~~~~l~~lL~~ld~~~~~~~v~VI 274 (389)
T PRK03992 199 SELV--QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGT--SGDREVQRTLMQLLAEMDGFDPRGNVKII 274 (389)
T ss_pred HHHh--HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCC--CccHHHHHHHHHHHHhccccCCCCCEEEE
Confidence 7776 4467777888899999888888999999999999765432111 12233333333322 23678999
Q ss_pred EccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHhhhhhcCCCCc
Q 005179 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRYLP 503 (710)
Q Consensus 428 ~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~-~~l~~l~~ls~~~i~~r~~p 503 (710)
++||..+ .+|+++.| ||+ .|.|+.|+.++|.+||+...... .+.. ..+..++..+.+|.+
T Consensus 275 ~aTn~~~-----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~------~~~~~~~~~~la~~t~g~sg----- 338 (389)
T PRK03992 275 AATNRID-----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM------NLADDVDLEELAELTEGASG----- 338 (389)
T ss_pred EecCChh-----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC------CCCCcCCHHHHHHHcCCCCH-----
Confidence 9999876 78999997 997 89999999999999999766533 2222 235667777766643
Q ss_pred chHHHHHHHHHh
Q 005179 504 DKAIDLVDEAGS 515 (710)
Q Consensus 504 ~~ai~ll~~a~~ 515 (710)
.+...++.+|+.
T Consensus 339 adl~~l~~eA~~ 350 (389)
T PRK03992 339 ADLKAICTEAGM 350 (389)
T ss_pred HHHHHHHHHHHH
Confidence 555667776663
No 25
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.1e-18 Score=182.61 Aligned_cols=203 Identities=21% Similarity=0.262 Sum_probs=141.0
Q ss_pred hcCCCCcccCHHH---HHHHHHHHHc---------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 286 EELIDPVIGRETE---IQRIIQILCR---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 286 ~~~l~~liGr~~~---i~~l~~~L~~---------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
.-+|+++-|.|+. ++.+++.|.. +-+.+|||+||||||||.||+++|-+. +.+++...
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----------~VPFF~~s 369 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----------GVPFFYAS 369 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----------CCCeEecc
Confidence 3468899999864 4555555543 445789999999999999999999877 44455544
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc-------cCCCeEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGELQC 426 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l-------~~~~v~v 426 (710)
.+.+- ..+.|.-..+++++|..++...|||+||||||.+-+++... . ..-....|.++| .+..++|
T Consensus 370 GSEFd--Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~----~-~~y~kqTlNQLLvEmDGF~qNeGiIv 442 (752)
T KOG0734|consen 370 GSEFD--EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS----D-QHYAKQTLNQLLVEMDGFKQNEGIIV 442 (752)
T ss_pred ccchh--hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc----H-HHHHHHHHHHHHHHhcCcCcCCceEE
Confidence 43332 23455567889999999999999999999999995544321 1 111222333332 2457999
Q ss_pred EEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 005179 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p 503 (710)
|++||.++ .+|++|.| ||+ .|.|+.|+..-|.+||+....+.. +.-.+++.+ +++-+.+|.+
T Consensus 443 igATNfpe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~--~~~~VD~~i---iARGT~GFsG----- 507 (752)
T KOG0734|consen 443 IGATNFPE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP--LDEDVDPKI---IARGTPGFSG----- 507 (752)
T ss_pred EeccCChh-----hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC--cccCCCHhH---hccCCCCCch-----
Confidence 99999998 89999999 998 899999999999999998877542 222344443 3333333322
Q ss_pred chHHHHHHHHHhhhhhh
Q 005179 504 DKAIDLVDEAGSRAHIE 520 (710)
Q Consensus 504 ~~ai~ll~~a~~~~~~~ 520 (710)
.+.-.++..|+-++.+.
T Consensus 508 AdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 508 ADLANLVNQAALKAAVD 524 (752)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45566777776665554
No 26
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.77 E-value=4.9e-18 Score=172.49 Aligned_cols=187 Identities=22% Similarity=0.311 Sum_probs=141.2
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHH---HHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 278 VDLTARASEELIDPVIGRETEIQR---IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~---l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
.+|.+.+||.++++++|+++.+-+ |...+...+-++++|+||||||||+||+.|+...... .++++++
T Consensus 126 ~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~-------Syrfvel-- 196 (554)
T KOG2028|consen 126 KPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH-------SYRFVEL-- 196 (554)
T ss_pred CChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC-------ceEEEEE--
Confidence 378999999999999999987643 4556677778899999999999999999998765211 2334443
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHh-----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEc
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQK-----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~-----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~a 429 (710)
+...++.+ .++.+|+..+. ....||||||||++ +...++.+++.+++|.+.+||+
T Consensus 197 SAt~a~t~-------dvR~ife~aq~~~~l~krkTilFiDEiHRF-------------NksQQD~fLP~VE~G~I~lIGA 256 (554)
T KOG2028|consen 197 SATNAKTN-------DVRDIFEQAQNEKSLTKRKTILFIDEIHRF-------------NKSQQDTFLPHVENGDITLIGA 256 (554)
T ss_pred eccccchH-------HHHHHHHHHHHHHhhhcceeEEEeHHhhhh-------------hhhhhhcccceeccCceEEEec
Confidence 33333222 26666666643 34789999999999 3345789999999999999999
Q ss_pred cChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHh---------hcCCCCCHHHHHHHHHHhhhh
Q 005179 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEA---------HHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~---------~~~~~i~~~~l~~l~~ls~~~ 496 (710)
||.++ .|.++.+|.+||.++.+...+.+....||..-..-+.. +..+.+++.++++++.++.+.
T Consensus 257 TTENP---SFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGD 329 (554)
T KOG2028|consen 257 TTENP---SFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGD 329 (554)
T ss_pred ccCCC---ccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCch
Confidence 99876 67899999999999999999999999998874432211 111346778888888877653
No 27
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.76 E-value=1.5e-17 Score=180.58 Aligned_cols=200 Identities=20% Similarity=0.257 Sum_probs=143.5
Q ss_pred cCCCCcccCHHHHHHHHHHHHc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~-------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-+++++.|.+.+++.+.+.+.- ..+.++||+||||||||++++++|..+ +..++.+.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~ 211 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVV 211 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEe
Confidence 3577899999888877765421 346789999999999999999999987 56677777
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc-------cCCCeEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGELQC 426 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l-------~~~~v~v 426 (710)
.+.+. .++.|+.+..++.+|..+....|+||||||+|.++........ +........+..++ ...++.+
T Consensus 212 ~s~l~--~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~--~~d~~~~r~l~~LL~~ld~~~~~~~v~V 287 (398)
T PTZ00454 212 GSEFV--QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT--GADREVQRILLELLNQMDGFDQTTNVKV 287 (398)
T ss_pred hHHHH--HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccC--CccHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 66665 3466777788999999998888999999999999765322111 11223333332222 2357889
Q ss_pred EEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 005179 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p 503 (710)
|++|+..+ .+|+++.| ||+ .|.|+.|+.++|..||+.+..+. ++. .+-.+..++..+.+|.+
T Consensus 288 I~aTN~~d-----~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~----~l~-~dvd~~~la~~t~g~sg----- 352 (398)
T PTZ00454 288 IMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM----NLS-EEVDLEDFVSRPEKISA----- 352 (398)
T ss_pred EEecCCch-----hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC----CCC-cccCHHHHHHHcCCCCH-----
Confidence 99999876 89999998 997 89999999999999999877643 222 11235566666666533
Q ss_pred chHHHHHHHHHh
Q 005179 504 DKAIDLVDEAGS 515 (710)
Q Consensus 504 ~~ai~ll~~a~~ 515 (710)
.+...++.+|+.
T Consensus 353 aDI~~l~~eA~~ 364 (398)
T PTZ00454 353 ADIAAICQEAGM 364 (398)
T ss_pred HHHHHHHHHHHH
Confidence 555666666653
No 28
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.2e-17 Score=181.76 Aligned_cols=202 Identities=20% Similarity=0.203 Sum_probs=152.4
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCccc------------
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------ 344 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~l------------ 344 (710)
..|.+++||.+|++++|++..+..|...+..+...+ +||+||+|||||++|+.+|+.+.+...+...
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 367889999999999999999999999888766555 7999999999999999999998653211100
Q ss_pred --cCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccc
Q 005179 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (710)
Q Consensus 345 --~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (710)
....++.+|... ..| ...++.+.+.+. .....|+||||+|.| ..+.++.|+..
T Consensus 86 ~g~~~dviEIdaas------~~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~L-------------s~~A~NALLKt 144 (484)
T PRK14956 86 KGISSDVLEIDAAS------NRG--IENIRELRDNVKFAPMGGKYKVYIIDEVHML-------------TDQSFNALLKT 144 (484)
T ss_pred ccCCccceeechhh------ccc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhc-------------CHHHHHHHHHH
Confidence 011233333211 111 122444444443 234569999999999 45678888888
Q ss_pred ccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 419 l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
+++ +.+++|++|+... .+.+++++||+.+.|.+++.++..+.|+.++.. .++.++++++..++..+.+.
T Consensus 145 LEEPp~~viFILaTte~~-----kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~----Egi~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 145 LEEPPAHIVFILATTEFH-----KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI----ENVQYDQEGLFWIAKKGDGS 215 (484)
T ss_pred hhcCCCceEEEeecCChh-----hccHHHHhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCh
Confidence 886 7888898888754 678999999999999999999988888887764 47899999999999998775
Q ss_pred hcCCCCcchHHHHHHHHHh
Q 005179 497 ISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 497 i~~r~~p~~ai~ll~~a~~ 515 (710)
+++++.+|+.+++
T Consensus 216 ------~RdAL~lLeq~i~ 228 (484)
T PRK14956 216 ------VRDMLSFMEQAIV 228 (484)
T ss_pred ------HHHHHHHHHHHHH
Confidence 4568888888764
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.5e-18 Score=169.37 Aligned_cols=190 Identities=21% Similarity=0.265 Sum_probs=150.9
Q ss_pred cCCCCcccCHHHHHHHHHHHH------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 287 ELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
-+++++-|-+...+.|.+.+- |..-+.+||||||||||+.||+++|.+. +..++++..
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSS 199 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSS 199 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeeh
Confidence 368899999988888877431 1223679999999999999999999988 678889988
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-----CCCeEEEEc
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIAS 429 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-----~~~v~vI~a 429 (710)
++++ +++-|+.+..++.+|+.++++.|+|+||||||.+++.+..+.+ +....+..-|+-.|. +..+.|+|+
T Consensus 200 SDLv--SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs--easRRIKTEfLVQMqGVG~d~~gvLVLgA 275 (439)
T KOG0739|consen 200 SDLV--SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES--EASRRIKTEFLVQMQGVGNDNDGVLVLGA 275 (439)
T ss_pred HHHH--HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch--HHHHHHHHHHHHhhhccccCCCceEEEec
Confidence 8888 6789999999999999999999999999999999887655332 333334333322222 346888999
Q ss_pred cChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcC
Q 005179 430 TTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~ 499 (710)
||.+- .+|.+++|||+ .|.|+.|....|..+++-.+. .....+++..+..+...+.+|.+.
T Consensus 276 TNiPw-----~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG----~tp~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 276 TNIPW-----VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLG----DTPHVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred CCCch-----hHHHHHHHHhhcceeccCCcHHHhhhhheeccC----CCccccchhhHHHHHhhcCCCCcC
Confidence 99874 78999999998 899999999999888875443 334678888999999999999764
No 30
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=3.4e-17 Score=169.66 Aligned_cols=213 Identities=19% Similarity=0.212 Sum_probs=148.6
Q ss_pred CCCCcccCHHHHHHHHHHHHc---------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe
Q 005179 288 LIDPVIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~---------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l 352 (710)
+++.++|.+....++.++... +...|++|+||||||||++|+.+++.+..... .....++.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---ccCCceEEe
Confidence 356789988776666543210 13357899999999999999999998754321 223457777
Q ss_pred ehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEcc
Q 005179 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIAST 430 (710)
Q Consensus 353 d~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~at 430 (710)
+.+.+. ..+.|+....+..+++.+. +.||||||+|.|...+.. ....+..+.|...++. +.+++|+++
T Consensus 81 ~~~~l~--~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~~-----~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 81 ERADLV--GEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGEK-----DFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred cHHHhh--hhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCcc-----chHHHHHHHHHHHHhccCCCEEEEecC
Confidence 877776 3456777777777776543 579999999999532111 2234566777777764 567778777
Q ss_pred ChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc--C--CCCcch
Q 005179 431 TQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS--D--RYLPDK 505 (710)
Q Consensus 431 t~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~--~--r~~p~~ 505 (710)
+..+......++|+|.+||. .|.+++++.+++.+|++.++.. .+..++++++..+.+...++.. . ..-...
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~ 226 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----REYKLTEEAKWKLREHLYKVDQLSSREFSNARY 226 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH----cCCccCHHHHHHHHHHHHHHHhccCCCCchHHH
Confidence 76665566778999999996 7999999999999999987763 4678999999988877665431 1 111234
Q ss_pred HHHHHHHHHhhh
Q 005179 506 AIDLVDEAGSRA 517 (710)
Q Consensus 506 ai~ll~~a~~~~ 517 (710)
+..+++.|..+.
T Consensus 227 ~~n~~e~a~~~~ 238 (261)
T TIGR02881 227 VRNIIEKAIRRQ 238 (261)
T ss_pred HHHHHHHHHHHH
Confidence 566676666444
No 31
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.75 E-value=3.4e-17 Score=184.87 Aligned_cols=202 Identities=21% Similarity=0.279 Sum_probs=142.5
Q ss_pred cCCCCcccCHHHHHHHHHHHH------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 287 ELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
-+|++++|.++...++.+++. ...+.++||+||||||||++++++|... +.+++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~~ 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeeccH
Confidence 356778888876655554432 2345689999999999999999999887 667788877
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC-CCChHhHHHhhcccc----cCCCeEEEEc
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSL----GRGELQCIAS 429 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l----~~~~v~vI~a 429 (710)
+.+.. .+.|..+..++.+|+.+....|+||||||+|.+......+.++ ........+.|...+ .++.++||++
T Consensus 122 ~~~~~--~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~a 199 (495)
T TIGR01241 122 SDFVE--MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAA 199 (495)
T ss_pred HHHHH--HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEe
Confidence 76652 3455566788999999988889999999999997654332110 011122333333222 3567899999
Q ss_pred cChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchH
Q 005179 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~a 506 (710)
||.++ .+|+++.| ||+ .|.|+.|+.++|.+||+...... .+. .+..+..++..+.+|.+ .+.
T Consensus 200 Tn~~~-----~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~----~~~-~~~~l~~la~~t~G~sg-----adl 264 (495)
T TIGR01241 200 TNRPD-----VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK----KLA-PDVDLKAVARRTPGFSG-----ADL 264 (495)
T ss_pred cCChh-----hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC----CCC-cchhHHHHHHhCCCCCH-----HHH
Confidence 99986 79999998 897 89999999999999999876532 111 23346677777666543 455
Q ss_pred HHHHHHHHh
Q 005179 507 IDLVDEAGS 515 (710)
Q Consensus 507 i~ll~~a~~ 515 (710)
..++.+|+.
T Consensus 265 ~~l~~eA~~ 273 (495)
T TIGR01241 265 ANLLNEAAL 273 (495)
T ss_pred HHHHHHHHH
Confidence 667776653
No 32
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.75 E-value=2.7e-17 Score=179.54 Aligned_cols=201 Identities=23% Similarity=0.287 Sum_probs=143.8
Q ss_pred hhcCCCCcccCHHHHHHHHHHHHc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEE
Q 005179 285 SEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (710)
Q Consensus 285 ~~~~l~~liGr~~~i~~l~~~L~~-------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ 351 (710)
...+++++.|.+.+++.+.+.+.. ..+.++||+||||||||++|+++|..+ +..++.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~~fi~ 247 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET----------SATFLR 247 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CCCEEE
Confidence 345778899999999888776531 345679999999999999999999987 455666
Q ss_pred eehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc-------cCCCe
Q 005179 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGEL 424 (710)
Q Consensus 352 ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l-------~~~~v 424 (710)
+..+.+. .++.|+.+..++.+|..+....++||||||+|.+........ ..+..++...+..++ ...++
T Consensus 248 V~~seL~--~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~--sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 248 VVGSELI--QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT--SGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred Eecchhh--hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC--CcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 6666655 356777778889999988888899999999999976543211 122333333332222 34678
Q ss_pred EEEEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHHhhhhhcCC
Q 005179 425 QCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDR 500 (710)
Q Consensus 425 ~vI~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~-~l~~l~~ls~~~i~~r 500 (710)
.||++||..+ .+|+++.| ||+ .|.|+.|+.++|.+||+....+. .+.++ .+..++..+.+|.+
T Consensus 324 ~VI~ATNr~d-----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~------~l~~dvdl~~la~~t~g~sg-- 390 (438)
T PTZ00361 324 KVIMATNRIE-----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM------TLAEDVDLEEFIMAKDELSG-- 390 (438)
T ss_pred EEEEecCChH-----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC------CCCcCcCHHHHHHhcCCCCH--
Confidence 9999999876 78999987 897 89999999999999999766533 33332 34556666666543
Q ss_pred CCcchHHHHHHHHHh
Q 005179 501 YLPDKAIDLVDEAGS 515 (710)
Q Consensus 501 ~~p~~ai~ll~~a~~ 515 (710)
.+...++.+|+.
T Consensus 391 ---AdI~~i~~eA~~ 402 (438)
T PTZ00361 391 ---ADIKAICTEAGL 402 (438)
T ss_pred ---HHHHHHHHHHHH
Confidence 444556666653
No 33
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.75 E-value=2.4e-17 Score=181.86 Aligned_cols=194 Identities=26% Similarity=0.351 Sum_probs=148.7
Q ss_pred hhHHhhhhcCCCCcccCHHHHHH---HHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh
Q 005179 279 DLTARASEELIDPVIGRETEIQR---IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~---l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~ 355 (710)
+|.+++||.+|+++||+++.+.. +..++......+++|+||||||||++|+.+++.+ +..++.++..
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~ 70 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAV 70 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 47889999999999999998766 8888888778899999999999999999999977 4455555432
Q ss_pred hhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccC
Q 005179 356 LLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431 (710)
Q Consensus 356 ~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att 431 (710)
.. + ...++.+++.+. ...+.||||||+|.+ ....++.|.+.++++.+++|++|+
T Consensus 71 ~~--~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-------------~~~~q~~LL~~le~~~iilI~att 128 (413)
T PRK13342 71 TS--G-------VKDLREVIEEARQRRSAGRRTILFIDEIHRF-------------NKAQQDALLPHVEDGTITLIGATT 128 (413)
T ss_pred cc--c-------HHHHHHHHHHHHHhhhcCCceEEEEechhhh-------------CHHHHHHHHHHhhcCcEEEEEeCC
Confidence 11 1 112344444432 235689999999999 345677888889999999999887
Q ss_pred hHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHhhhhhcCCCCcchHHHHH
Q 005179 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNC-KFTLEAINAAVHLSARYISDRYLPDKAIDLV 510 (710)
Q Consensus 432 ~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~-~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll 510 (710)
... .+.+++++.+||..+.+.+++.++...+++..+..... ++ .+++++++.++.++.+. +..++.++
T Consensus 129 ~n~---~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~--~~i~i~~~al~~l~~~s~Gd------~R~aln~L 197 (413)
T PRK13342 129 ENP---SFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKER--GLVELDDEALDALARLANGD------ARRALNLL 197 (413)
T ss_pred CCh---hhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHhCCCC------HHHHHHHH
Confidence 654 34678999999999999999999999999987765432 44 89999999998876542 45567777
Q ss_pred HHHHh
Q 005179 511 DEAGS 515 (710)
Q Consensus 511 ~~a~~ 515 (710)
+.++.
T Consensus 198 e~~~~ 202 (413)
T PRK13342 198 ELAAL 202 (413)
T ss_pred HHHHH
Confidence 76653
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.74 E-value=1.1e-16 Score=188.74 Aligned_cols=199 Identities=20% Similarity=0.280 Sum_probs=148.7
Q ss_pred CCCCcccCHHHHHHHHHHHH-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 288 LIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~-------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
+++++.|.+...+.+.+.+. ...+.++||+||||||||++|+++|..+ +..++.++.
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~~ 520 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVRG 520 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEeh
Confidence 57888998887777766543 1345679999999999999999999988 677888888
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc----cCCCeEEEEcc
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL----GRGELQCIAST 430 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l----~~~~v~vI~at 430 (710)
+.+. .++.|+.+..++.+|..+....|+||||||+|.++........ ......+.+.|...+ ...+++||++|
T Consensus 521 ~~l~--~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~-~~~~~~~~~~lL~~ldg~~~~~~v~vI~aT 597 (733)
T TIGR01243 521 PEIL--SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD-TSVTDRIVNQLLTEMDGIQELSNVVVIAAT 597 (733)
T ss_pred HHHh--hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC-ccHHHHHHHHHHHHhhcccCCCCEEEEEeC
Confidence 8877 5678999999999999999999999999999999875432111 111223444443333 35679999999
Q ss_pred ChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHHhhhhhcCCCCcchH
Q 005179 431 TQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLPDKA 506 (710)
Q Consensus 431 t~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~-~l~~l~~ls~~~i~~r~~p~~a 506 (710)
|.++ .+|+++.| ||+ .|.++.|+.++|.+||+.... +..+.++ .++.+++.+.+|.+ .+.
T Consensus 598 n~~~-----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~------~~~~~~~~~l~~la~~t~g~sg-----adi 661 (733)
T TIGR01243 598 NRPD-----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR------SMPLAEDVDLEELAEMTEGYTG-----ADI 661 (733)
T ss_pred CChh-----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc------CCCCCccCCHHHHHHHcCCCCH-----HHH
Confidence 9987 79999998 998 899999999999999985543 2333332 36778888777644 344
Q ss_pred HHHHHHHHh
Q 005179 507 IDLVDEAGS 515 (710)
Q Consensus 507 i~ll~~a~~ 515 (710)
..++.+|+.
T Consensus 662 ~~~~~~A~~ 670 (733)
T TIGR01243 662 EAVCREAAM 670 (733)
T ss_pred HHHHHHHHH
Confidence 445555553
No 35
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.74 E-value=1.8e-17 Score=166.07 Aligned_cols=205 Identities=19% Similarity=0.204 Sum_probs=155.0
Q ss_pred hhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh
Q 005179 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (710)
Q Consensus 277 ~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~ 356 (710)
-..|++++||.+|++++|++..+.-|...+.++...|.|||||||||||+.++++++.+.. +.+..+++.+++.+.
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNASD 98 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC----ccccccchhhhcccc
Confidence 3468899999999999999999999999999988899999999999999999999999955 223345555555433
Q ss_pred hhhccccCccHHHHHHHHHHHHH-----hcC-CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEE
Q 005179 357 LMAGAKERGELEARVTTLISEIQ-----KSG-DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIA 428 (710)
Q Consensus 357 l~~g~~~~g~~e~~l~~~~~~~~-----~~~-~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 428 (710)
.. |.....+-...+..+..... .++ .-|++|||+|.| ..++++.|+..|++ ...++|.
T Consensus 99 er-Gisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-------------tsdaq~aLrr~mE~~s~~trFiL 164 (346)
T KOG0989|consen 99 ER-GISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-------------TSDAQAALRRTMEDFSRTTRFIL 164 (346)
T ss_pred cc-cccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh-------------hHHHHHHHHHHHhccccceEEEE
Confidence 22 11111110011111111110 012 269999999999 66788999988885 6788899
Q ss_pred ccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHH
Q 005179 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ 508 (710)
.||+.+ .+.+.+.+|++.+.|++...++....|+.++.+ .++.+++++++.++..+.+-+ ++|+.
T Consensus 165 Icnyls-----rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~----E~v~~d~~al~~I~~~S~GdL------R~Ait 229 (346)
T KOG0989|consen 165 ICNYLS-----RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASK----EGVDIDDDALKLIAKISDGDL------RRAIT 229 (346)
T ss_pred EcCChh-----hCChHHHhhHHHhcCCCcchHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcH------HHHHH
Confidence 999977 788999999999999999999999999988884 489999999999999988753 35666
Q ss_pred HHHHHH
Q 005179 509 LVDEAG 514 (710)
Q Consensus 509 ll~~a~ 514 (710)
.|+.+.
T Consensus 230 ~Lqsls 235 (346)
T KOG0989|consen 230 TLQSLS 235 (346)
T ss_pred HHHHhh
Confidence 666554
No 36
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.74 E-value=4.4e-16 Score=183.22 Aligned_cols=177 Identities=19% Similarity=0.261 Sum_probs=124.9
Q ss_pred CcccCHHHHHHHHHHHHcC---------CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh--
Q 005179 291 PVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-- 359 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~---------~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~-- 359 (710)
.++|+++.++.+...+.+. ...+++|+||+|||||++|++||+.+ +..++.+|++.+..
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----------~~~~~~~d~se~~~~~ 524 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----------GVHLERFDMSEYMEKH 524 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----------cCCeEEEeCchhhhcc
Confidence 4899999999998877642 12357999999999999999999988 55677777666532
Q ss_pred ------c--cccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC---------
Q 005179 360 ------G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (710)
Q Consensus 360 ------g--~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--------- 422 (710)
| ..+.|.- .-..+.+.++..+..||+|||+|.+ ..++++.|.+++++|
T Consensus 525 ~~~~lig~~~gyvg~~--~~~~l~~~~~~~p~~VvllDEieka-------------~~~~~~~Ll~~ld~g~~~d~~g~~ 589 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFE--QGGLLTEAVRKHPHCVLLLDEIEKA-------------HPDIYNILLQVMDYATLTDNNGRK 589 (731)
T ss_pred cHHHHhcCCCCCcccc--hhhHHHHHHHhCCCeEEEEechhhc-------------CHHHHHHHHHhhccCeeecCCCcc
Confidence 1 1122210 1122334445566789999999988 567888888888765
Q ss_pred ----CeEEEEccChHH--HH----------------h--hhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHh--
Q 005179 423 ----ELQCIASTTQDE--HR----------------T--QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA-- 475 (710)
Q Consensus 423 ----~v~vI~att~~~--~~----------------~--~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~-- 475 (710)
+.++|.|+|... +. . .....|.|.+||+ .|.|.+.+.++..+|++..+.++..
T Consensus 590 vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l 669 (731)
T TIGR02639 590 ADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQL 669 (731)
T ss_pred cCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345777776421 00 0 0114688999997 8999999999999999987765432
Q ss_pred -hc--CCCCCHHHHHHHHHH
Q 005179 476 -HH--NCKFTLEAINAAVHL 492 (710)
Q Consensus 476 -~~--~~~i~~~~l~~l~~l 492 (710)
.+ .+.++++++++++..
T Consensus 670 ~~~~~~l~i~~~a~~~La~~ 689 (731)
T TIGR02639 670 NEKNIKLELTDDAKKYLAEK 689 (731)
T ss_pred HhCCCeEEeCHHHHHHHHHh
Confidence 22 367899999999875
No 37
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=2.9e-17 Score=184.81 Aligned_cols=201 Identities=17% Similarity=0.192 Sum_probs=150.4
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCc-EEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nv-LL~GppG~GKT~la~~la~~l~~~~~p~~l------------- 344 (710)
-|.+++|+.+|+++||+++.++.|...+..++..|. ||+||+|||||++++.|++.+.+.......
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence 478899999999999999999999999887665555 899999999999999999998653211100
Q ss_pred -cCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 345 -~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
....++++|... .++ .+.++.+++.+. ..+..|+||||+|.| ....+|.|+..|
T Consensus 85 G~h~DviEIDAas------~rg--VDdIReLIe~a~~~P~~gr~KVIIIDEah~L-------------T~~A~NALLKtL 143 (830)
T PRK07003 85 GRFVDYVEMDAAS------NRG--VDEMAALLERAVYAPVDARFKVYMIDEVHML-------------TNHAFNAMLKTL 143 (830)
T ss_pred CCCceEEEecccc------ccc--HHHHHHHHHHHHhccccCCceEEEEeChhhC-------------CHHHHHHHHHHH
Confidence 011244443221 111 122445555443 234569999999999 445677777788
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ .++.+|.+||... .+.+.+++||+.+.|..++.++..+.|+.++.. .++.++++.+..+++.+.+.
T Consensus 144 EEPP~~v~FILaTtd~~-----KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~----EgI~id~eAL~lIA~~A~Gs- 213 (830)
T PRK07003 144 EEPPPHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE----ERIAFEPQALRLLARAAQGS- 213 (830)
T ss_pred HhcCCCeEEEEEECChh-----hccchhhhheEEEecCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-
Confidence 76 4788888888765 567899999999999999999999998887764 47899999999999987764
Q ss_pred cCCCCcchHHHHHHHHHh
Q 005179 498 SDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~ 515 (710)
.++++.+++.++.
T Consensus 214 -----mRdALsLLdQAia 226 (830)
T PRK07003 214 -----MRDALSLTDQAIA 226 (830)
T ss_pred -----HHHHHHHHHHHHH
Confidence 3568888887764
No 38
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.8e-16 Score=179.41 Aligned_cols=289 Identities=25% Similarity=0.266 Sum_probs=182.6
Q ss_pred HHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcC
Q 005179 303 IQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG 382 (710)
Q Consensus 303 ~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~ 382 (710)
.+.+......+++++||||+|||.++++++.. .. .. ..++..... .++.|+.+..+..++..+....
T Consensus 10 ~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~---~~-------~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~ 76 (494)
T COG0464 10 FKKLGIEPPKGVLLHGPPGTGKTLLARALANE---GA-------EF-LSINGPEIL--SKYVGESELRLRELFEEAEKLA 76 (494)
T ss_pred HHHhCCCCCCCceeeCCCCCchhHHHHHHHhc---cC-------cc-cccCcchhh--hhhhhHHHHHHHHHHHHHHHhC
Confidence 33444566788999999999999999999987 11 11 222222222 4567788888999999999888
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc---cCCCeEEEEccChHHHHhhhhccHHHHc--ccc-ceEecC
Q 005179 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---GRGELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISE 456 (710)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l---~~~~v~vI~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~ 456 (710)
+.++++||++.+.+...... ......+...+...+ .++.+.+++.++... .+++++.+ ||. .+.+..
T Consensus 77 ~~ii~~d~~~~~~~~~~~~~--~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~ 149 (494)
T COG0464 77 PSIIFIDEIDALAPKRSSDQ--GEVERRVVAQLLALMDGLKRGQVIVIGATNRPD-----GLDPAKRRPGRFDREIEVNL 149 (494)
T ss_pred CCeEeechhhhcccCccccc--cchhhHHHHHHHHhcccccCCceEEEeecCCcc-----ccChhHhCccccceeeecCC
Confidence 89999999999987654311 122223333332222 244467777676654 67888887 886 799999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhHHhhhhCC
Q 005179 457 PSQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSK 535 (710)
Q Consensus 457 Ps~~~~~~IL~~l~~~~~~~~~~~i~-~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~ 535 (710)
|+...+.+|+...... +.+. +.....++..+.+|.. .+...+...+......+..
T Consensus 150 ~~~~~~~ei~~~~~~~------~~~~~~~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~~~r~~------------- 205 (494)
T COG0464 150 PDEAGRLEILQIHTRL------MFLGPPGTGKTLAARTVGKSG-----ADLGALAKEAALRELRRAI------------- 205 (494)
T ss_pred CCHHHHHHHHHHHHhc------CCCcccccHHHHHHhcCCccH-----HHHHHHHHHHHHHHHHhhh-------------
Confidence 9999888887765442 2222 3455566666665544 2223333233211111100
Q ss_pred CChHHHHHHHHHHHhhHHHhhccccchhhhhccCCcchhhhhccCCCCCCCCCCCcCCHHHHHHHHHhhhC-----CChh
Q 005179 536 PPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSG-----IPVQ 610 (710)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~s~~~g-----ip~~ 610 (710)
........++.+++...+....+ ....
T Consensus 206 ------------------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (494)
T COG0464 206 ------------------------------------------------DLVGEYIGVTEDDFEEALKKVLPSRGVLFEDE 237 (494)
T ss_pred ------------------------------------------------ccCcccccccHHHHHHHHHhcCcccccccCCC
Confidence 00011234566666666666533 3445
Q ss_pred hccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhh----cCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSR----VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 611 ~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r----~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
.+.|.+.+++...++.+.+. +...+++.. .|+.+| .++|||||||||||+|||++|.+ .
T Consensus 238 ~v~~~diggl~~~k~~l~e~----------v~~~~~~~e~~~~~~~~~~----~giLl~GpPGtGKT~lAkava~~---~ 300 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEA----------IETPLKRPELFRKLGLRPP----KGVLLYGPPGTGKTLLAKAVALE---S 300 (494)
T ss_pred CcceehhhcHHHHHHHHHHH----------HHhHhhChHHHHhcCCCCC----CeeEEECCCCCCHHHHHHHHHhh---C
Confidence 67888877776666655422 223333332 355544 69999999999999999999997 6
Q ss_pred CCcceeeCCCCCCC
Q 005179 687 VRIHYLFFPSPFNS 700 (710)
Q Consensus 687 ~~~li~~d~se~~~ 700 (710)
+.+++.++++++.+
T Consensus 301 ~~~fi~v~~~~l~s 314 (494)
T COG0464 301 RSRFISVKGSELLS 314 (494)
T ss_pred CCeEEEeeCHHHhc
Confidence 77899999987754
No 39
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=2e-16 Score=157.01 Aligned_cols=191 Identities=20% Similarity=0.267 Sum_probs=140.9
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcC-----CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRR-----TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~-----~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
+.....||..|+++||+++..+++.-.+... .--|+||+||||.||||||+-+|+++ +..+....
T Consensus 15 ~~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em----------gvn~k~ts 84 (332)
T COG2255 15 KIERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL----------GVNLKITS 84 (332)
T ss_pred hhhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh----------cCCeEecc
Confidence 3445678999999999998887776655432 23579999999999999999999999 44444333
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC------------
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------ 421 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------ 421 (710)
...+. ..|+ +..++..++. +.||||||||++ +..+.++|.+.|+.
T Consensus 85 Gp~le----K~gD----laaiLt~Le~--~DVLFIDEIHrl-------------~~~vEE~LYpaMEDf~lDI~IG~gp~ 141 (332)
T COG2255 85 GPALE----KPGD----LAAILTNLEE--GDVLFIDEIHRL-------------SPAVEEVLYPAMEDFRLDIIIGKGPA 141 (332)
T ss_pred ccccc----Chhh----HHHHHhcCCc--CCeEEEehhhhc-------------ChhHHHHhhhhhhheeEEEEEccCCc
Confidence 22222 1222 3444444443 569999999999 44566777777763
Q ss_pred --------CCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005179 422 --------GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (710)
Q Consensus 422 --------~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~l 492 (710)
..+.+||+||... .+...|+.||. ...+..++.++..+|+..-.. ..++.++++....++..
T Consensus 142 Arsv~ldLppFTLIGATTr~G-----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~----~l~i~i~~~~a~eIA~r 212 (332)
T COG2255 142 ARSIRLDLPPFTLIGATTRAG-----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK----ILGIEIDEEAALEIARR 212 (332)
T ss_pred cceEeccCCCeeEeeeccccc-----cccchhHHhcCCeeeeecCCHHHHHHHHHHHHH----HhCCCCChHHHHHHHHh
Confidence 2577999999976 67789999998 788999999998888876555 45889999998888877
Q ss_pred hhhhhcCCCCcchHHHHHHHHHhhh
Q 005179 493 SARYISDRYLPDKAIDLVDEAGSRA 517 (710)
Q Consensus 493 s~~~i~~r~~p~~ai~ll~~a~~~~ 517 (710)
++ ..|.-|..||.+.-..+
T Consensus 213 SR------GTPRIAnRLLrRVRDfa 231 (332)
T COG2255 213 SR------GTPRIANRLLRRVRDFA 231 (332)
T ss_pred cc------CCcHHHHHHHHHHHHHH
Confidence 54 45788888887665433
No 40
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.8e-16 Score=176.60 Aligned_cols=181 Identities=20% Similarity=0.267 Sum_probs=128.3
Q ss_pred CcccCHHHHHHHHHHHHcC---------CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh--
Q 005179 291 PVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-- 359 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~---------~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~-- 359 (710)
.++|+++.+..+...+.+. .-.++||.||+|||||.||++||..+... ...++.+|++.+..
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~-------e~aliR~DMSEy~EkH 564 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD-------EQALIRIDMSEYMEKH 564 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC-------CccceeechHHHHHHH
Confidence 4999999999999887652 12357899999999999999999999433 46788889888762
Q ss_pred ------c--cccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC---------
Q 005179 360 ------G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (710)
Q Consensus 360 ------g--~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--------- 422 (710)
| ..|.|--+ =..+-+.++..+.+|+++|||+.. ..++.|+|++.|..|
T Consensus 565 sVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA-------------HpdV~nilLQVlDdGrLTD~~Gr~ 629 (786)
T COG0542 565 SVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA-------------HPDVFNLLLQVLDDGRLTDGQGRT 629 (786)
T ss_pred HHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc-------------CHHHHHHHHHHhcCCeeecCCCCE
Confidence 1 12222111 112233445566789999999998 788999999999865
Q ss_pred ----CeEEEEccChHHHH-----------------hh------hhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHH
Q 005179 423 ----ELQCIASTTQDEHR-----------------TQ------FEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYE 474 (710)
Q Consensus 423 ----~v~vI~att~~~~~-----------------~~------~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~ 474 (710)
+.++|.|+|-.... .. ....|.|++|++ .|.|.+.+.+...+|+...+.+..
T Consensus 630 VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~ 709 (786)
T COG0542 630 VDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLA 709 (786)
T ss_pred EecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHH
Confidence 34566666532100 00 012488899998 899999999999999887665543
Q ss_pred h-----hcCCCCCHHHHHHHHHHh
Q 005179 475 A-----HHNCKFTLEAINAAVHLS 493 (710)
Q Consensus 475 ~-----~~~~~i~~~~l~~l~~ls 493 (710)
. ...+.+++++.+.+++.+
T Consensus 710 ~~L~~~~i~l~~s~~a~~~l~~~g 733 (786)
T COG0542 710 KRLAERGITLELSDEAKDFLAEKG 733 (786)
T ss_pred HHHHhCCceEEECHHHHHHHHHhc
Confidence 2 334678999988887663
No 41
>CHL00176 ftsH cell division protein; Validated
Probab=99.73 E-value=1.1e-16 Score=182.79 Aligned_cols=202 Identities=21% Similarity=0.276 Sum_probs=141.4
Q ss_pred cCCCCcccCHHHHHHHHHHH---Hc---------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 287 ELIDPVIGRETEIQRIIQIL---CR---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L---~~---------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
-+|++++|.++..+.+.+++ .. ..+.++||+||||||||++|+++|.+. +.+++.+++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~ 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISG 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccH
Confidence 36788999887666655543 21 235689999999999999999999987 667778777
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC-CCChHhHHHhhcccc----cCCCeEEEEc
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSL----GRGELQCIAS 429 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l----~~~~v~vI~a 429 (710)
+.+.. .+.|....+++.+|..+....|+||||||+|.+......+.+. ........+.|...+ .+..+++|++
T Consensus 250 s~f~~--~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaa 327 (638)
T CHL00176 250 SEFVE--MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAA 327 (638)
T ss_pred HHHHH--HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEe
Confidence 76652 2344455678889999988889999999999997543221110 011112233333222 3467899999
Q ss_pred cChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchH
Q 005179 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~a 506 (710)
||..+ .+|+++.| ||+ .|.++.|+.++|.+||+..+... ....+..+..++..+.+|.. .+.
T Consensus 328 TN~~~-----~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-----~~~~d~~l~~lA~~t~G~sg-----aDL 392 (638)
T CHL00176 328 TNRVD-----ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-----KLSPDVSLELIARRTPGFSG-----ADL 392 (638)
T ss_pred cCchH-----hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-----ccchhHHHHHHHhcCCCCCH-----HHH
Confidence 99976 68899998 897 89999999999999999877642 12234456677776666533 456
Q ss_pred HHHHHHHHh
Q 005179 507 IDLVDEAGS 515 (710)
Q Consensus 507 i~ll~~a~~ 515 (710)
..++++|+.
T Consensus 393 ~~lvneAal 401 (638)
T CHL00176 393 ANLLNEAAI 401 (638)
T ss_pred HHHHHHHHH
Confidence 667777653
No 42
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=4.3e-17 Score=181.36 Aligned_cols=201 Identities=17% Similarity=0.202 Sum_probs=150.3
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCc-EEEcCCCChHHHHHHHHHHHHHhcCC-----Cc--cc------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEV-----PV--FL------ 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nv-LL~GppG~GKT~la~~la~~l~~~~~-----p~--~l------ 344 (710)
.|.+++|+.+|+++||+++.++.|.+.+...+..|. ||+||+|||||++++.|++.+.+..- +. ..
T Consensus 5 vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC 84 (700)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRAC 84 (700)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHH
Confidence 577899999999999999999999999988776665 89999999999999999999976210 00 00
Q ss_pred ------cCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHh
Q 005179 345 ------LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414 (710)
Q Consensus 345 ------~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~ 414 (710)
....++++|... ..+ .+.++++++.+. ..+..|+||||+|.| +...+|.
T Consensus 85 ~~I~aG~hpDviEIdAas------~~g--VDdIReLie~~~~~P~~gr~KViIIDEah~L-------------s~~AaNA 143 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAAS------NRG--VDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-------------TNHAFNA 143 (700)
T ss_pred HHHHcCCCCcceEecccc------cCC--HHHHHHHHHHHHhchhcCCceEEEEEChHhc-------------CHHHHHH
Confidence 011344444321 111 123445555443 234579999999999 4456788
Q ss_pred hcccccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005179 415 LKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (710)
Q Consensus 415 L~~~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~l 492 (710)
|+..|++ +++.+|.+||... .+.+++++||+.+.|..++.++..+.|+.++.. .++.+++++++.++..
T Consensus 144 LLKTLEEPP~~v~FILaTtep~-----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~----Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 144 MLKTLEEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE----EGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHhhccCCCCceEEEEeCChH-----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHH
Confidence 8888886 6788888888765 677999999999999999999988888877763 4788999999998888
Q ss_pred hhhhhcCCCCcchHHHHHHHHHh
Q 005179 493 SARYISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 493 s~~~i~~r~~p~~ai~ll~~a~~ 515 (710)
+++. +.+++.+++.++.
T Consensus 215 A~Gs------~RdALsLLdQaia 231 (700)
T PRK12323 215 AQGS------MRDALSLTDQAIA 231 (700)
T ss_pred cCCC------HHHHHHHHHHHHH
Confidence 7664 4567888887654
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.72 E-value=3.1e-16 Score=163.71 Aligned_cols=210 Identities=18% Similarity=0.244 Sum_probs=142.8
Q ss_pred CcccCHHHHHHHHHHHH--------c-------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh
Q 005179 291 PVIGRETEIQRIIQILC--------R-------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~--------~-------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~ 355 (710)
+++|.++..+++.++.. . ..+.|++|+||||||||++|+++++.+....+ ....+++.++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~---~~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY---IKKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC---CCCCceEEecHH
Confidence 48888776665554321 1 12456899999999999999999998754321 123357777777
Q ss_pred hhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChH
Q 005179 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (710)
Q Consensus 356 ~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~ 433 (710)
.+.. .+.|+.......+++.+ .+.||||||+|.+...+.. ...+.++++.|...|++ +++++|++++..
T Consensus 101 ~l~~--~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~----~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~ 171 (287)
T CHL00181 101 DLVG--QYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNE----RDYGSEAIEILLQVMENQRDDLVVIFAGYKD 171 (287)
T ss_pred HHHH--HHhccchHHHHHHHHHc---cCCEEEEEccchhccCCCc----cchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 6653 24455455555565543 4579999999999643211 13356777888887764 568889998877
Q ss_pred HHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCc--chHHHHH
Q 005179 434 EHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP--DKAIDLV 510 (710)
Q Consensus 434 ~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p--~~ai~ll 510 (710)
....++..+|+|.+||. .|.|++++.+++.+|++.++.+. +..++++....+..+..+......+. .....++
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~----~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ----QYQLTPEAEKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh----cCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 66667778899999997 89999999999999999888754 56788888777666544422222111 2344455
Q ss_pred HHHHhh
Q 005179 511 DEAGSR 516 (710)
Q Consensus 511 ~~a~~~ 516 (710)
+.+..+
T Consensus 248 e~~~~~ 253 (287)
T CHL00181 248 DRARMR 253 (287)
T ss_pred HHHHHH
Confidence 555533
No 44
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.71 E-value=1.2e-16 Score=165.99 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=120.5
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh-----cCC
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-----SGD 383 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~-----~~~ 383 (710)
+.+..++|+||||||||.+|+++|.++ +..++.++.+++. .++.|+.+..++++|..+.. ..|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~--sk~vGEsEk~IR~~F~~A~~~a~~~~aP 213 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELE--SENAGEPGKLIRQRYREAADIIKKKGKM 213 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhh--cCcCCcHHHHHHHHHHHHHHHhhccCCC
Confidence 456778999999999999999999999 8889999999988 67899999999999998864 469
Q ss_pred eEEEEccchhhhhCCCCCCCCCCChHhHH-Hhhcccc----------------cCCCeEEEEccChHHHHhhhhccHHHH
Q 005179 384 VILFIDEVHTLIGSGTVGRGNKGTGLDIS-NLLKPSL----------------GRGELQCIASTTQDEHRTQFEKDKALA 446 (710)
Q Consensus 384 ~IL~IDEid~l~~~~~~~~~~~~~~~~~~-~~L~~~l----------------~~~~v~vI~att~~~~~~~~~~d~aL~ 446 (710)
+||||||||.+++...... ......+. ..|...+ ....+.||+|||..+ .+|++|+
T Consensus 214 cVLFIDEIDA~~g~r~~~~--~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpALl 286 (413)
T PLN00020 214 SCLFINDLDAGAGRFGTTQ--YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAPLI 286 (413)
T ss_pred eEEEEehhhhcCCCCCCCC--cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHhHc
Confidence 9999999999987643211 11111221 2333221 145688999999987 7999999
Q ss_pred c--cccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005179 447 R--RFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (710)
Q Consensus 447 ~--Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~l 492 (710)
| ||+.. +..|+.++|.+||+.+.++ ..++...+..++..
T Consensus 287 RpGRfDk~-i~lPd~e~R~eIL~~~~r~------~~l~~~dv~~Lv~~ 327 (413)
T PLN00020 287 RDGRMEKF-YWAPTREDRIGVVHGIFRD------DGVSREDVVKLVDT 327 (413)
T ss_pred CCCCCCce-eCCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHc
Confidence 9 99853 4689999999999988773 35566555555443
No 45
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.1e-16 Score=174.97 Aligned_cols=198 Identities=22% Similarity=0.262 Sum_probs=154.0
Q ss_pred CCCCcccCHHHHHHHHHHHHc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~-------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
+++++-|..+...-+.+++.- +...++|||||||||||.||.++|... +.+++++..
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKG 734 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKG 734 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecC
Confidence 467777877666666665532 334689999999999999999999987 788999988
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC----CCeEEEEcc
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR----GELQCIAST 430 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~----~~v~vI~at 430 (710)
..+. .+|.|..|+.++.+|..++.+.|||||+||+|.+.+.+.-+ +.+-...+.|.|+.-|.. ..+.++++|
T Consensus 735 PElL--~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD--sTGVTDRVVNQlLTelDG~Egl~GV~i~aaT 810 (952)
T KOG0735|consen 735 PELL--SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD--STGVTDRVVNQLLTELDGAEGLDGVYILAAT 810 (952)
T ss_pred HHHH--HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC--CCCchHHHHHHHHHhhccccccceEEEEEec
Confidence 8888 68999999999999999999999999999999998775432 223445567777666652 357888999
Q ss_pred ChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHH
Q 005179 431 TQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (710)
Q Consensus 431 t~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai 507 (710)
++++ -+||+|.| |++ .|..+.|+..+|.+||+.+...+... ++-.++.++..+.+|.+ .+..
T Consensus 811 sRpd-----liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-----~~vdl~~~a~~T~g~tg-----ADlq 875 (952)
T KOG0735|consen 811 SRPD-----LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-----TDVDLECLAQKTDGFTG-----ADLQ 875 (952)
T ss_pred CCcc-----ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-----cccchHHHhhhcCCCch-----hhHH
Confidence 8887 68999999 998 78999999999999999988754221 23347788888888755 3445
Q ss_pred HHHHHHH
Q 005179 508 DLVDEAG 514 (710)
Q Consensus 508 ~ll~~a~ 514 (710)
.++..|-
T Consensus 876 ~ll~~A~ 882 (952)
T KOG0735|consen 876 SLLYNAQ 882 (952)
T ss_pred HHHHHHH
Confidence 5555553
No 46
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.4e-16 Score=179.37 Aligned_cols=201 Identities=22% Similarity=0.276 Sum_probs=145.0
Q ss_pred cCCCCcccCHHHHHHHHHH---HH---------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 287 ELIDPVIGRETEIQRIIQI---LC---------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~---L~---------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
-.|.++-|.++..+.|.++ |. .+.+..+||+||||||||.||+++|.+. +.+++.+..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~svSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSVSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------CCceeeech
Confidence 3689999999766666554 32 2456889999999999999999999988 788889888
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhH---HHhhccccc----CCCeEEE
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI---SNLLKPSLG----RGELQCI 427 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~---~~~L~~~l~----~~~v~vI 427 (710)
+.++..- .|.-..+++++|..++...|+|+||||||.+..... |.+...++.+- .|.|+.-|. ...++++
T Consensus 378 SEFvE~~--~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~-G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 378 SEFVEMF--VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG-GKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred HHHHHHh--cccchHHHHHHHHHhhccCCeEEEeccccccccccc-ccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 8887433 333367899999999999999999999999976542 10011122222 333332222 4679999
Q ss_pred EccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcc
Q 005179 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (710)
Q Consensus 428 ~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~ 504 (710)
++||.++ .+|++|+| ||+ .|.++.|+...|.+|++..++.. ++...+..+..++.++.+|.+ .
T Consensus 455 a~tnr~d-----~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~----~~~~e~~dl~~~a~~t~gf~g-----a 520 (774)
T KOG0731|consen 455 AATNRPD-----ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK----KLDDEDVDLSKLASLTPGFSG-----A 520 (774)
T ss_pred eccCCcc-----ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc----CCCcchhhHHHHHhcCCCCcH-----H
Confidence 9999987 79999999 998 89999999999999999776633 222233334446666665533 4
Q ss_pred hHHHHHHHHH
Q 005179 505 KAIDLVDEAG 514 (710)
Q Consensus 505 ~ai~ll~~a~ 514 (710)
+...++.+|+
T Consensus 521 dl~n~~neaa 530 (774)
T KOG0731|consen 521 DLANLCNEAA 530 (774)
T ss_pred HHHhhhhHHH
Confidence 5555666654
No 47
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.71 E-value=1.1e-16 Score=176.97 Aligned_cols=180 Identities=20% Similarity=0.284 Sum_probs=127.7
Q ss_pred hhhcCCCCcccCHHHHHHHHHHHH-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEE
Q 005179 284 ASEELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (710)
Q Consensus 284 ~~~~~l~~liGr~~~i~~l~~~L~-------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~ 350 (710)
...-+|+++.|.+.+++++.+.+. ...++++|||||||||||++++++|+.+.............++
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 345578899999999988877642 1346789999999999999999999988432110000112233
Q ss_pred EeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc----CC
Q 005179 351 SLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RG 422 (710)
Q Consensus 351 ~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~ 422 (710)
.+....+. .++.|+.+..++.+|+.+.. ..++||||||+|.++..+..+.. ++....+.+.|...|. .+
T Consensus 256 ~v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s-~d~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 256 NIKGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS-SDVETTVVPQLLSELDGVESLD 332 (512)
T ss_pred eccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc-chHHHHHHHHHHHHhcccccCC
Confidence 33344444 45788888889988887765 36899999999999876433211 1112233344444433 36
Q ss_pred CeEEEEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHH
Q 005179 423 ELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLRE 471 (710)
Q Consensus 423 ~v~vI~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~ 471 (710)
++.+|++||..+ .+|+++.| ||+ .|.|+.|+.+++.+||+..+.
T Consensus 333 ~ViVI~ATN~~d-----~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 333 NVIVIGASNRED-----MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ceEEEeccCChh-----hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 789999999987 78999999 998 799999999999999997654
No 48
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.4e-16 Score=166.88 Aligned_cols=204 Identities=21% Similarity=0.254 Sum_probs=157.8
Q ss_pred hhhhcCCCCcccCHHHHHHHHHHH------------HcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEE
Q 005179 283 RASEELIDPVIGRETEIQRIIQIL------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (710)
Q Consensus 283 ~~~~~~l~~liGr~~~i~~l~~~L------------~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~ 350 (710)
..++-.++++-|.+..-..+.+.+ .|.....+||.||||+|||+|++++|.+. +..++
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------~atff 215 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------GATFF 215 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh----------cceEe
Confidence 334556888888665444444321 23445679999999999999999999988 77888
Q ss_pred EeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHh-HHHhhcccc-----cCCCe
Q 005179 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD-ISNLLKPSL-----GRGEL 424 (710)
Q Consensus 351 ~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~-~~~~L~~~l-----~~~~v 424 (710)
.+..+.+. .++.|+.+..++.+|.-++...|.|+||||+|.++.....+.. +.+.. -..+|.+.. .+.++
T Consensus 216 ~iSassLt--sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~--e~srr~ktefLiq~~~~~s~~~drv 291 (428)
T KOG0740|consen 216 NISASSLT--SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEH--ESSRRLKTEFLLQFDGKNSAPDDRV 291 (428)
T ss_pred eccHHHhh--hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCccc--ccchhhhhHHHhhhccccCCCCCeE
Confidence 88888777 6889999999999999999999999999999999987633211 22222 233333332 24589
Q ss_pred EEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 005179 425 QCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (710)
Q Consensus 425 ~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p 503 (710)
.+|||||.+. ++|.+++|||+ .+.|+.|+.+.|..+|..++.+. +..+.+..+..+++.+++|...
T Consensus 292 lvigaTN~P~-----e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~----~~~l~~~d~~~l~~~Tegysgs---- 358 (428)
T KOG0740|consen 292 LVIGATNRPW-----ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ----PNGLSDLDISLLAKVTEGYSGS---- 358 (428)
T ss_pred EEEecCCCch-----HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC----CCCccHHHHHHHHHHhcCcccc----
Confidence 9999999986 89999999998 79999999999999999988743 6678888899999999999763
Q ss_pred chHHHHHHHHH
Q 005179 504 DKAIDLVDEAG 514 (710)
Q Consensus 504 ~~ai~ll~~a~ 514 (710)
+..+++.+|.
T Consensus 359 -di~~l~kea~ 368 (428)
T KOG0740|consen 359 -DITALCKEAA 368 (428)
T ss_pred -cHHHHHHHhh
Confidence 4556666665
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.71 E-value=7.5e-16 Score=165.08 Aligned_cols=186 Identities=20% Similarity=0.252 Sum_probs=132.1
Q ss_pred HHhhhhcCCCCcccCHHHHHHHHHHHHc-----CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh
Q 005179 281 TARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (710)
Q Consensus 281 ~~~~~~~~l~~liGr~~~i~~l~~~L~~-----~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~ 355 (710)
..++||..|++++|++++++.+...+.. ...++++|+||||||||++|+.+|+.+ +..+......
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l----------~~~~~~~~~~ 85 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM----------GVNIRITSGP 85 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecc
Confidence 5678999999999999999888776642 334689999999999999999999988 3444433322
Q ss_pred hhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--------------
Q 005179 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR-------------- 421 (710)
Q Consensus 356 ~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~-------------- 421 (710)
.+. ..+ .+..++..+ ..+.||||||+|.+.. ...+.|...++.
T Consensus 86 ~~~----~~~----~l~~~l~~l--~~~~vl~IDEi~~l~~-------------~~~e~l~~~~e~~~~~~~l~~~~~~~ 142 (328)
T PRK00080 86 ALE----KPG----DLAAILTNL--EEGDVLFIDEIHRLSP-------------VVEEILYPAMEDFRLDIMIGKGPAAR 142 (328)
T ss_pred ccc----ChH----HHHHHHHhc--ccCCEEEEecHhhcch-------------HHHHHHHHHHHhcceeeeeccCcccc
Confidence 111 111 233344333 2467999999999832 122222222221
Q ss_pred ------CCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhh
Q 005179 422 ------GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (710)
Q Consensus 422 ------~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~ 494 (710)
..+.+|++|+... .+++.|.+||. .+.+++|+.+++.+|++..... .++.++++++..++..+.
T Consensus 143 ~~~~~l~~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~ia~~~~ 213 (328)
T PRK00080 143 SIRLDLPPFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI----LGVEIDEEGALEIARRSR 213 (328)
T ss_pred ceeecCCCceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHcC
Confidence 2367888888764 57789999996 7899999999999999976663 478999999999998877
Q ss_pred hhhcCCCCcchHHHHHHHHH
Q 005179 495 RYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 495 ~~i~~r~~p~~ai~ll~~a~ 514 (710)
++ |..+..+++.+.
T Consensus 214 G~------pR~a~~~l~~~~ 227 (328)
T PRK00080 214 GT------PRIANRLLRRVR 227 (328)
T ss_pred CC------chHHHHHHHHHH
Confidence 64 566677776554
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.70 E-value=1.1e-15 Score=162.39 Aligned_cols=179 Identities=21% Similarity=0.291 Sum_probs=125.6
Q ss_pred CCCCcccCHHHHHHHHHHHHc-----CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccc
Q 005179 288 LIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~-----~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~ 362 (710)
+|++++|++++++.+..++.. ...++++|+||||||||++++++++.+ +..+.........
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~----------~~~~~~~~~~~~~---- 67 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM----------GVNLKITSGPALE---- 67 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeccchhc----
Confidence 578899999999988887752 335679999999999999999999987 3333333222111
Q ss_pred cCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--------------------C
Q 005179 363 ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--------------------G 422 (710)
Q Consensus 363 ~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--------------------~ 422 (710)
..+. +...+..+ ..+.+|||||+|.+.. +..+.|...+++ .
T Consensus 68 ~~~~----l~~~l~~~--~~~~vl~iDEi~~l~~-------------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~ 128 (305)
T TIGR00635 68 KPGD----LAAILTNL--EEGDVLFIDEIHRLSP-------------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLP 128 (305)
T ss_pred Cchh----HHHHHHhc--ccCCEEEEehHhhhCH-------------HHHHHhhHHHhhhheeeeeccCccccceeecCC
Confidence 1122 22233322 2356999999999832 223334333321 2
Q ss_pred CeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCC
Q 005179 423 ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501 (710)
Q Consensus 423 ~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~ 501 (710)
.+.+|++|+... .+++++.+||. .+.+.+|+.++..++++..+.. .++.+++++++.+++.+.++
T Consensus 129 ~~~li~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~----~~~~~~~~al~~ia~~~~G~----- 194 (305)
T TIGR00635 129 PFTLVGATTRAG-----MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL----LNVEIEPEAALEIARRSRGT----- 194 (305)
T ss_pred CeEEEEecCCcc-----ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHHhCCC-----
Confidence 367888888764 57889999996 6799999999999999877663 47889999999999887775
Q ss_pred CcchHHHHHHHHH
Q 005179 502 LPDKAIDLVDEAG 514 (710)
Q Consensus 502 ~p~~ai~ll~~a~ 514 (710)
|..+..+++.+.
T Consensus 195 -pR~~~~ll~~~~ 206 (305)
T TIGR00635 195 -PRIANRLLRRVR 206 (305)
T ss_pred -cchHHHHHHHHH
Confidence 455666766554
No 51
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.70 E-value=3.5e-16 Score=170.04 Aligned_cols=199 Identities=23% Similarity=0.290 Sum_probs=138.9
Q ss_pred cCCCCcccCHHHHHHHHHHHHc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~-------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-.++++.|.+++++++.+.+.. ..+.+++|+||||||||++|++++..+ +..++.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v~ 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVV 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEecc
Confidence 3567899999999998876532 234679999999999999999999987 45556665
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc-------cCCCeEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGELQC 426 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l-------~~~~v~v 426 (710)
...+. ..+.|+....++.++..+....|+||||||+|.+......... .+.......+..++ ..+++.+
T Consensus 189 ~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~--~~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 189 GSELV--RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGT--SGDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred hHHHH--HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCC--CccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 55554 3455666677888888888778899999999999754322111 11222222222222 2467899
Q ss_pred EEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHhhhhhcCCCC
Q 005179 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRYL 502 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~-~~l~~l~~ls~~~i~~r~~ 502 (710)
|++||..+ .+|+++.+ ||+ .|.|+.|+.++|.+||+...... .+.+ ..+..++..+.+|.+
T Consensus 265 I~ttn~~~-----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~------~l~~~~~~~~la~~t~g~sg---- 329 (364)
T TIGR01242 265 IAATNRPD-----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM------KLAEDVDLEAIAKMTEGASG---- 329 (364)
T ss_pred EEecCChh-----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC------CCCccCCHHHHHHHcCCCCH----
Confidence 99999876 68999987 887 79999999999999998765532 2222 235667777666533
Q ss_pred cchHHHHHHHHHh
Q 005179 503 PDKAIDLVDEAGS 515 (710)
Q Consensus 503 p~~ai~ll~~a~~ 515 (710)
.+...++.+|+.
T Consensus 330 -~dl~~l~~~A~~ 341 (364)
T TIGR01242 330 -ADLKAICTEAGM 341 (364)
T ss_pred -HHHHHHHHHHHH
Confidence 455556666653
No 52
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.7e-16 Score=180.37 Aligned_cols=202 Identities=18% Similarity=0.221 Sum_probs=151.1
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCc-EEEcCCCChHHHHHHHHHHHHHhcCCCc----cc--------
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV----FL-------- 344 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nv-LL~GppG~GKT~la~~la~~l~~~~~p~----~l-------- 344 (710)
..|.+++||.+|+++||++..++.|...+...+-.+. ||+||+|||||++|+.+|+.+.+..... ..
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 3678899999999999999999999998888776775 8999999999999999999996542110 00
Q ss_pred --cCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccc
Q 005179 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (710)
Q Consensus 345 --~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (710)
....+++++. ....+ ...++.+++.+. .++..|+||||+|.| ..+.++.|++.
T Consensus 84 ~g~~~DviEidA------as~~k--VDdIReLie~v~~~P~~gk~KViIIDEAh~L-------------T~eAqNALLKt 142 (944)
T PRK14949 84 QGRFVDLIEVDA------ASRTK--VDDTRELLDNVQYRPSRGRFKVYLIDEVHML-------------SRSSFNALLKT 142 (944)
T ss_pred cCCCceEEEecc------ccccC--HHHHHHHHHHHHhhhhcCCcEEEEEechHhc-------------CHHHHHHHHHH
Confidence 0011222222 11111 122444444443 234579999999999 56688999999
Q ss_pred ccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 419 l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
|+. +.+++|++||... .+.+.+++||..+.|.+++.++....|+.++.. .++.++++++..++..+.+.
T Consensus 143 LEEPP~~vrFILaTTe~~-----kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~----EgI~~edeAL~lIA~~S~Gd 213 (944)
T PRK14949 143 LEEPPEHVKFLLATTDPQ-----KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ----EQLPFEAEALTLLAKAANGS 213 (944)
T ss_pred HhccCCCeEEEEECCCch-----hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 986 6788888887765 467899999999999999999999888887764 37899999999999887764
Q ss_pred hcCCCCcchHHHHHHHHHh
Q 005179 497 ISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 497 i~~r~~p~~ai~ll~~a~~ 515 (710)
+++++.+++.+++
T Consensus 214 ------~R~ALnLLdQala 226 (944)
T PRK14949 214 ------MRDALSLTDQAIA 226 (944)
T ss_pred ------HHHHHHHHHHHHH
Confidence 4567888877663
No 53
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.6e-16 Score=175.63 Aligned_cols=201 Identities=18% Similarity=0.180 Sum_probs=149.0
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~-------------- 343 (710)
.|.+++||.+|+++||++..++.|...+...+..+ +||+||+|||||++|+.+|+.+.+...+..
T Consensus 4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~ 83 (702)
T PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE 83 (702)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhc
Confidence 57789999999999999999999999888766554 599999999999999999999865321110
Q ss_pred ccCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 344 l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
.....++.+|.++ ..+ ...++.++..+. ..+..|+||||+|.| +....+.|+..+
T Consensus 84 g~hpDviEIDAAs------~~~--VddIReli~~~~y~P~~gk~KV~IIDEVh~L-------------S~~A~NALLKtL 142 (702)
T PRK14960 84 GRFIDLIEIDAAS------RTK--VEDTRELLDNVPYAPTQGRFKVYLIDEVHML-------------STHSFNALLKTL 142 (702)
T ss_pred CCCCceEEecccc------cCC--HHHHHHHHHHHhhhhhcCCcEEEEEechHhc-------------CHHHHHHHHHHH
Confidence 0111344444321 111 223555555443 234579999999999 445678888888
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ +.+.+|.+|+... .+.+.+++||..+.|.+++.++....|+.++.+ .++.++++++..++..+.+-
T Consensus 143 EEPP~~v~FILaTtd~~-----kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k----EgI~id~eAL~~IA~~S~Gd- 212 (702)
T PRK14960 143 EEPPEHVKFLFATTDPQ-----KLPITVISRCLQFTLRPLAVDEITKHLGAILEK----EQIAADQDAIWQIAESAQGS- 212 (702)
T ss_pred hcCCCCcEEEEEECChH-----hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-
Confidence 86 6677888777654 456889999999999999999998888888764 47899999999999887653
Q ss_pred cCCCCcchHHHHHHHHHh
Q 005179 498 SDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~ 515 (710)
.++++.+++.+++
T Consensus 213 -----LRdALnLLDQaIa 225 (702)
T PRK14960 213 -----LRDALSLTDQAIA 225 (702)
T ss_pred -----HHHHHHHHHHHHH
Confidence 3567777777664
No 54
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.70 E-value=2.6e-16 Score=181.94 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=147.3
Q ss_pred hhHHhhhhcCCCCcccCHHHHH---HHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh
Q 005179 279 DLTARASEELIDPVIGRETEIQ---RIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~---~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~ 355 (710)
+|.+++||.+|++++|+++.+. .+...+......+++|+|||||||||+|+++++.+ +..++.++..
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna~ 86 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNAV 86 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehhh
Confidence 6888899999999999999884 56677777777899999999999999999999876 3344444432
Q ss_pred hhhhccccCccHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHH
Q 005179 356 LLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434 (710)
Q Consensus 356 ~l~~g~~~~g~~e~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~ 434 (710)
..+. .++...+..+...... ....+|||||+|.+ ....++.|.+.++++.+++|++|+...
T Consensus 87 --~~~i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-------------n~~qQdaLL~~lE~g~IiLI~aTTenp 148 (725)
T PRK13341 87 --LAGV---KDLRAEVDRAKERLERHGKRTILFIDEVHRF-------------NKAQQDALLPWVENGTITLIGATTENP 148 (725)
T ss_pred --hhhh---HHHHHHHHHHHHHhhhcCCceEEEEeChhhC-------------CHHHHHHHHHHhcCceEEEEEecCCCh
Confidence 1111 1122222222111111 24579999999999 344567788889999999999888765
Q ss_pred HHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHH
Q 005179 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEA---HHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (710)
Q Consensus 435 ~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~---~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~ 511 (710)
.+.+++++.+|+..+.+++++.+++..+++..+..+.. ..++.+++++++.++..+.+. .+.++.+|+
T Consensus 149 ---~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD------~R~lln~Le 219 (725)
T PRK13341 149 ---YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD------ARSLLNALE 219 (725)
T ss_pred ---HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC------HHHHHHHHH
Confidence 34678999999999999999999999999988775433 235889999999999886542 245667777
Q ss_pred HHHh
Q 005179 512 EAGS 515 (710)
Q Consensus 512 ~a~~ 515 (710)
.++.
T Consensus 220 ~a~~ 223 (725)
T PRK13341 220 LAVE 223 (725)
T ss_pred HHHH
Confidence 6653
No 55
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.69 E-value=2.1e-15 Score=157.68 Aligned_cols=188 Identities=20% Similarity=0.245 Sum_probs=134.7
Q ss_pred CcccCHHHHHHHHHHHH--------c-------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh
Q 005179 291 PVIGRETEIQRIIQILC--------R-------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~--------~-------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~ 355 (710)
.++|.++..+++.++.. . ..+.+++|+||||||||++|+++++.+..... .....++.++..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~---~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGY---VRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC---cccceEEEecHH
Confidence 37888876666554321 0 12347999999999999999999998865321 112357777776
Q ss_pred hhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChH
Q 005179 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (710)
Q Consensus 356 ~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~ 433 (710)
.+.. .+.|+.+..+..+++.+ .+.+|||||++.|...+.. ...+.++++.|...|+. +++++|++++.+
T Consensus 100 ~l~~--~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 100 DLVG--QYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQRDDLVVILAGYKD 170 (284)
T ss_pred HHhH--hhcccchHHHHHHHHHc---cCcEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 6653 34555555566666654 3579999999998543211 12355677788887764 478899998877
Q ss_pred HHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhh
Q 005179 434 EHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (710)
Q Consensus 434 ~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~ 494 (710)
....++..+|+|.+||. .|.|++++.+++..|++.++.+. +..+++++++.+..+..
T Consensus 171 ~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~----~~~l~~~a~~~L~~~l~ 228 (284)
T TIGR02880 171 RMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ----QYRFSAEAEEAFADYIA 228 (284)
T ss_pred HHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh----ccccCHHHHHHHHHHHH
Confidence 66667778999999997 89999999999999999888754 46788888887766544
No 56
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=3.7e-16 Score=177.10 Aligned_cols=200 Identities=19% Similarity=0.199 Sum_probs=148.5
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCc-EEEcCCCChHHHHHHHHHHHHHhcCCCcc--cc----------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF--LL---------- 345 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nv-LL~GppG~GKT~la~~la~~l~~~~~p~~--l~---------- 345 (710)
.|.+++||.+|+++||++..++.|...+...+-.+. ||+||+|||||++|+.+|+.+.+...... ..
T Consensus 5 ~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 5 VLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQ 84 (647)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHc
Confidence 578899999999999999999999999887666664 89999999999999999999976421100 00
Q ss_pred --CceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 346 --SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 346 --~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
...++.+|... .. . .+.++.+++.+. .++..|+||||+|.| +...+|.|+..|
T Consensus 85 g~~~D~ieidaas------~~-~-VddiR~li~~~~~~p~~g~~KV~IIDEah~L-------------s~~a~NALLKtL 143 (647)
T PRK07994 85 GRFVDLIEIDAAS------RT-K-VEDTRELLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNALLKTL 143 (647)
T ss_pred CCCCCceeecccc------cC-C-HHHHHHHHHHHHhhhhcCCCEEEEEechHhC-------------CHHHHHHHHHHH
Confidence 01233333211 11 1 122455555543 234569999999999 556788888899
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ +.+.+|.+|+... .+.+.+++||..+.|.+++.++....|+.++.. .++.++++++..++..+.+.
T Consensus 144 EEPp~~v~FIL~Tt~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~----e~i~~e~~aL~~Ia~~s~Gs- 213 (647)
T PRK07994 144 EEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQA----EQIPFEPRALQLLARAADGS- 213 (647)
T ss_pred HcCCCCeEEEEecCCcc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-
Confidence 87 6788888887765 577899999999999999999988888877763 37889999999998887764
Q ss_pred cCCCCcchHHHHHHHHH
Q 005179 498 SDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~ 514 (710)
+++++.+++.+.
T Consensus 214 -----~R~Al~lldqai 225 (647)
T PRK07994 214 -----MRDALSLTDQAI 225 (647)
T ss_pred -----HHHHHHHHHHHH
Confidence 345666666554
No 57
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.2e-16 Score=175.08 Aligned_cols=202 Identities=24% Similarity=0.332 Sum_probs=149.6
Q ss_pred cCCCCcccCHHHHHHHHHHHH-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~-------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-.++++.|.+.....+.+.+. .+....+||+||||||||++|+++|..+ +.+++.++
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v~ 308 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISVK 308 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEee
Confidence 345666666655554444321 2344579999999999999999999987 88999999
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc---c-CCCeEEEEc
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---G-RGELQCIAS 429 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l---~-~~~v~vI~a 429 (710)
.+.+. .++.|+.++.++.+|..++...|+||||||+|.++.....+.+ .....+.+.|+..+ + ...+.+|++
T Consensus 309 ~~~l~--sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~--~~~~r~~~~lL~~~d~~e~~~~v~vi~a 384 (494)
T COG0464 309 GSELL--SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED--GSGRRVVGQLLTELDGIEKAEGVLVIAA 384 (494)
T ss_pred CHHHh--ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc--hHHHHHHHHHHHHhcCCCccCceEEEec
Confidence 98777 6789999999999999999999999999999999876543211 11234555554444 2 356889999
Q ss_pred cChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHhhhhhcCCCCcch
Q 005179 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCK-FTLEAINAAVHLSARYISDRYLPDK 505 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~-i~~~~l~~l~~ls~~~i~~r~~p~~ 505 (710)
||.+. .+|+++.| ||+ .|.|+.|+.++|.+|++....+. +.. ..+-.++.+++.+.+|.. .+
T Consensus 385 TN~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~----~~~~~~~~~~~~l~~~t~~~sg-----ad 450 (494)
T COG0464 385 TNRPD-----DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK----KPPLAEDVDLEELAEITEGYSG-----AD 450 (494)
T ss_pred CCCcc-----ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc----CCcchhhhhHHHHHHHhcCCCH-----HH
Confidence 99987 89999999 998 89999999999999999877643 221 234456667776666433 55
Q ss_pred HHHHHHHHHhh
Q 005179 506 AIDLVDEAGSR 516 (710)
Q Consensus 506 ai~ll~~a~~~ 516 (710)
...++.+|+..
T Consensus 451 i~~i~~ea~~~ 461 (494)
T COG0464 451 IAALVREAALE 461 (494)
T ss_pred HHHHHHHHHHH
Confidence 56666666543
No 58
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.68 E-value=5.8e-15 Score=171.59 Aligned_cols=177 Identities=19% Similarity=0.244 Sum_probs=122.3
Q ss_pred CcccCHHHHHHHHHHHHcC---------CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh--
Q 005179 291 PVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-- 359 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~---------~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~-- 359 (710)
.++|+++.++.+...+.+. ...++||+||||||||.+|+.+|+.+ +..++.+|++.+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l----------~~~~i~id~se~~~~~ 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMERH 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCCcEEeechhhcccc
Confidence 4899999999999887631 12468999999999999999999988 44566666655431
Q ss_pred ------cc--ccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC---------
Q 005179 360 ------GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (710)
Q Consensus 360 ------g~--~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--------- 422 (710)
|. .+.|..+ -..+.+.+...+.+||||||+|.+ ..++++.|.++|++|
T Consensus 529 ~~~~LiG~~~gyvg~~~--~g~L~~~v~~~p~sVlllDEieka-------------~~~v~~~LLq~ld~G~ltd~~g~~ 593 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNLLLQVMDNGTLTDNNGRK 593 (758)
T ss_pred cHHHHcCCCCCcccccc--cchHHHHHHhCCCcEEEeccHhhh-------------hHHHHHHHHHHHhcCeeecCCCce
Confidence 11 1222100 011223344566789999999999 567888888887754
Q ss_pred ----CeEEEEccChHHH---H-----------------hhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHh--
Q 005179 423 ----ELQCIASTTQDEH---R-----------------TQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA-- 475 (710)
Q Consensus 423 ----~v~vI~att~~~~---~-----------------~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~-- 475 (710)
+.++|.|||...- . -.....|.|.+|++ .|.|.+++.++..+|+...+..+..
T Consensus 594 vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l 673 (758)
T PRK11034 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQL 673 (758)
T ss_pred ecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3457888773210 0 00124589999997 7899999999999999876654432
Q ss_pred ---hcCCCCCHHHHHHHHHH
Q 005179 476 ---HHNCKFTLEAINAAVHL 492 (710)
Q Consensus 476 ---~~~~~i~~~~l~~l~~l 492 (710)
...+.+++++++.++..
T Consensus 674 ~~~~i~l~~~~~~~~~l~~~ 693 (758)
T PRK11034 674 DQKGVSLEVSQEARDWLAEK 693 (758)
T ss_pred HHCCCCceECHHHHHHHHHh
Confidence 23467899999988765
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=5.8e-16 Score=171.63 Aligned_cols=201 Identities=20% Similarity=0.237 Sum_probs=143.3
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~l------------- 344 (710)
.|.+++||.+|++++|+++....+...+......+ +||+|||||||||+|+.+|+.+.+...+...
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 46789999999999999999888888887766555 7999999999999999999998543211100
Q ss_pred -cCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 345 -~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
....++.++.. ...| ...++.+.+.+.. ....|+||||+|.+ ..+.++.|+..+
T Consensus 83 g~~~dv~el~aa------~~~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-------------t~~a~~~LLk~L 141 (472)
T PRK14962 83 GTFMDVIELDAA------SNRG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-------------TKEAFNALLKTL 141 (472)
T ss_pred CCCCccEEEeCc------ccCC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHh-------------HHHHHHHHHHHH
Confidence 01123333321 1111 1224444444332 23569999999999 334567777777
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ +.+++|++|+... .+.+++.+||+.+.+.+++.++...+++..+. ..++.+++++++.++..+.+-+
T Consensus 142 E~p~~~vv~Ilattn~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~----~egi~i~~eal~~Ia~~s~Gdl 212 (472)
T PRK14962 142 EEPPSHVVFVLATTNLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAE----AEGIEIDREALSFIAKRASGGL 212 (472)
T ss_pred HhCCCcEEEEEEeCChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHhCCCH
Confidence 76 6788887777543 56899999999999999999998888887766 3478999999999998765432
Q ss_pred cCCCCcchHHHHHHHHHh
Q 005179 498 SDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~ 515 (710)
+.++..|+.++.
T Consensus 213 ------R~aln~Le~l~~ 224 (472)
T PRK14962 213 ------RDALTMLEQVWK 224 (472)
T ss_pred ------HHHHHHHHHHHH
Confidence 346666766543
No 60
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.7e-16 Score=152.50 Aligned_cols=177 Identities=20% Similarity=0.288 Sum_probs=136.5
Q ss_pred hhcCCCCcccCHHHHHHHHHHH-------------HcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEE
Q 005179 285 SEELIDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (710)
Q Consensus 285 ~~~~l~~liGr~~~i~~l~~~L-------------~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ 351 (710)
...+.+-+-|-+.+|+.+.+++ ....+.++|||||||+|||.||+++|... .|.++.
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht----------~c~fir 211 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIR 211 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc----------ceEEEE
Confidence 3334444556677776666543 33566789999999999999999999877 888899
Q ss_pred eehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-------CCCe
Q 005179 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGEL 424 (710)
Q Consensus 352 ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v 424 (710)
+..+.++ .++.|+-...++++|--++.+.|+|+|+||||.+-.+...+ ++++..+++..++.+|. ..++
T Consensus 212 vsgselv--qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~--~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 212 VSGSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVES--GSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred echHHHH--HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccC--CCCccHHHHHHHHHHHHhccccccccce
Confidence 9888888 67888888889999999999999999999999995543322 22345555555444443 4678
Q ss_pred EEEEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCC
Q 005179 425 QCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCK 480 (710)
Q Consensus 425 ~vI~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~ 480 (710)
.+|.+||.-+ -+||+|.| |++ .|+|++|+.+.|.+||+-..++.....+++
T Consensus 288 kvimatnrid-----ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~ 341 (404)
T KOG0728|consen 288 KVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN 341 (404)
T ss_pred EEEEeccccc-----cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccC
Confidence 9999999876 68999999 887 899999999999999998777665555554
No 61
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=9.6e-16 Score=171.66 Aligned_cols=202 Identities=18% Similarity=0.185 Sum_probs=150.2
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~l------------- 344 (710)
.|.+++||.+|+++||++..++.|...+...+..+ +||+||+|||||++|+.+|+.+.+...+...
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 84 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDE 84 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhc
Confidence 47889999999999999999999999998876666 5899999999999999999999764322110
Q ss_pred -cCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 345 -~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
....++++|..+ .. . .+.++.+++.+.. ....|+||||+|.| ..+.++.|+..|
T Consensus 85 g~~~d~~eidaas------~~-~-v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-------------s~~a~naLLk~L 143 (509)
T PRK14958 85 GRFPDLFEVDAAS------RT-K-VEDTRELLDNIPYAPTKGRFKVYLIDEVHML-------------SGHSFNALLKTL 143 (509)
T ss_pred CCCceEEEEcccc------cC-C-HHHHHHHHHHHhhccccCCcEEEEEEChHhc-------------CHHHHHHHHHHH
Confidence 111245554321 11 1 1224555555432 33469999999999 445678888888
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ ..+.+|.+|+... .+.+.+.+||..+.+.+++.++....++.++.. .++.++++++..++..+.+-
T Consensus 144 Eepp~~~~fIlattd~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~----egi~~~~~al~~ia~~s~Gs- 213 (509)
T PRK14958 144 EEPPSHVKFILATTDHH-----KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE----ENVEFENAALDLLARAANGS- 213 (509)
T ss_pred hccCCCeEEEEEECChH-----hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc-
Confidence 86 4677887777654 466789999999999999999988888877764 47899999999998887642
Q ss_pred cCCCCcchHHHHHHHHHhh
Q 005179 498 SDRYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~ 516 (710)
+.+++.+++.+++.
T Consensus 214 -----lR~al~lLdq~ia~ 227 (509)
T PRK14958 214 -----VRDALSLLDQSIAY 227 (509)
T ss_pred -----HHHHHHHHHHHHhc
Confidence 45678888877643
No 62
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.1e-15 Score=168.50 Aligned_cols=202 Identities=18% Similarity=0.226 Sum_probs=151.9
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCC-CcEEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~-nvLL~GppG~GKT~la~~la~~l~~~~~p~~-------------- 343 (710)
+|..++||.+|+++||++..++.|...+...+-. ++||+||+|+||||+|+.+|+.+.+...|..
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 4678999999999999999999998887765544 6899999999999999999999876443321
Q ss_pred ccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 344 l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
.....++++|.++ ..| .+.++.+++.+.. ....|+||||+|.| ....++.|+..+
T Consensus 82 ~~~~Dv~eidaas------~~~--vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-------------s~~A~NaLLK~L 140 (491)
T PRK14964 82 SNHPDVIEIDAAS------NTS--VDDIKVILENSCYLPISSKFKVYIIDEVHML-------------SNSAFNALLKTL 140 (491)
T ss_pred cCCCCEEEEeccc------CCC--HHHHHHHHHHHHhccccCCceEEEEeChHhC-------------CHHHHHHHHHHH
Confidence 1233456655431 111 2235666665542 34569999999999 445678888888
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ ..+.+|.+|+... .+.+.+.+||+.+.+.+++.++....++.++.+ .++.+++++++.+++.+.+.
T Consensus 141 EePp~~v~fIlatte~~-----Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~----Egi~i~~eAL~lIa~~s~Gs- 210 (491)
T PRK14964 141 EEPAPHVKFILATTEVK-----KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK----ENIEHDEESLKLIAENSSGS- 210 (491)
T ss_pred hCCCCCeEEEEEeCChH-----HHHHHHHHhheeeecccccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-
Confidence 86 5677887777654 466899999999999999999988888887774 47899999999999887653
Q ss_pred cCCCCcchHHHHHHHHHhh
Q 005179 498 SDRYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~ 516 (710)
...++.+++.++..
T Consensus 211 -----lR~alslLdqli~y 224 (491)
T PRK14964 211 -----MRNALFLLEQAAIY 224 (491)
T ss_pred -----HHHHHHHHHHHHHh
Confidence 34577777777643
No 63
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.67 E-value=2.3e-14 Score=170.70 Aligned_cols=181 Identities=19% Similarity=0.242 Sum_probs=123.2
Q ss_pred CCcccCHHHHHHHHHHHHcC-------C-C-CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh-
Q 005179 290 DPVIGRETEIQRIIQILCRR-------T-K-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA- 359 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~~-------~-~-~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~- 359 (710)
..++|++..++.+...+.+. . + .++||+||+|||||++|++||+.+... ...++.+|++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~-------~~~~~~~d~s~~~~~ 581 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS-------EDAMIRLDMSEYMEK 581 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-------ccceEEEEchhcccc
Confidence 35899999999998877531 1 1 246899999999999999999988432 34566666655431
Q ss_pred -------c--cccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--------
Q 005179 360 -------G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (710)
Q Consensus 360 -------g--~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------- 422 (710)
| ..+.|.-+ ...+.+.+...+..|++|||+|.+ ..++++.|++.++.|
T Consensus 582 ~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka-------------~~~v~~~Llq~le~g~~~d~~g~ 646 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA-------------HPDIFNLLLQILDDGRLTDSKGR 646 (821)
T ss_pred ccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC-------------CHHHHHHHHHHhccCceecCCCc
Confidence 1 11222100 112334455566689999999988 567888888888764
Q ss_pred -----CeEEEEccChHH-----------------------HHhh---------hhccHHHHcccc-ceEecCCCHHHHHH
Q 005179 423 -----ELQCIASTTQDE-----------------------HRTQ---------FEKDKALARRFQ-PVLISEPSQEDAVR 464 (710)
Q Consensus 423 -----~v~vI~att~~~-----------------------~~~~---------~~~d~aL~~Rf~-~I~v~~Ps~~~~~~ 464 (710)
+.++|.|+|... |... ....|.|.+|++ .|.|.+.+.++..+
T Consensus 647 ~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~ 726 (821)
T CHL00095 647 TIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWE 726 (821)
T ss_pred EEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHH
Confidence 345777766321 0000 013478899995 88999999999999
Q ss_pred HHHHHHHHHH---hhc--CCCCCHHHHHHHHHH
Q 005179 465 ILLGLREKYE---AHH--NCKFTLEAINAAVHL 492 (710)
Q Consensus 465 IL~~l~~~~~---~~~--~~~i~~~~l~~l~~l 492 (710)
|+...+.++. ..+ .+.+++++++.+++.
T Consensus 727 Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~ 759 (821)
T CHL00095 727 IAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEE 759 (821)
T ss_pred HHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHh
Confidence 9987666542 122 367899999988876
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=99.66 E-value=4.2e-16 Score=166.33 Aligned_cols=196 Identities=15% Similarity=0.219 Sum_probs=140.7
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~ 358 (710)
+|.+++||.+|++++|+++.+..+..++......|+||+||||||||++|+++|+.+.+... ...+++++.++..
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~~ 76 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDDR 76 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeecccccc
Confidence 68899999999999999999999998888777788999999999999999999999854321 1234444432211
Q ss_pred hccccCccHHHHHHHHHHHH---HhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChH
Q 005179 359 AGAKERGELEARVTTLISEI---QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (710)
Q Consensus 359 ~g~~~~g~~e~~l~~~~~~~---~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~ 433 (710)
....+...++...... ......|++|||+|.+ ..+.++.|+..++. ....+|.+|+..
T Consensus 77 ----~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-------------t~~aq~aL~~~lE~~~~~t~~il~~n~~ 139 (319)
T PLN03025 77 ----GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-------------TSGAQQALRRTMEIYSNTTRFALACNTS 139 (319)
T ss_pred ----cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-------------CHHHHHHHHHHHhcccCCceEEEEeCCc
Confidence 0112222222211110 0123569999999999 33456777777764 445566666654
Q ss_pred HHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHH
Q 005179 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (710)
Q Consensus 434 ~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~ 511 (710)
. .+.+++++|+..+.+.+|+.++....|+.++. ..++.++++++++++..+.+-+ ..++..|+
T Consensus 140 ~-----~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~----~egi~i~~~~l~~i~~~~~gDl------R~aln~Lq 202 (319)
T PLN03025 140 S-----KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVE----AEKVPYVPEGLEAIIFTADGDM------RQALNNLQ 202 (319)
T ss_pred c-----ccchhHHHhhhcccCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH------HHHHHHHH
Confidence 3 56689999999999999999999999888776 3488999999999998876532 35666665
No 65
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.7e-16 Score=151.67 Aligned_cols=149 Identities=19% Similarity=0.297 Sum_probs=121.4
Q ss_pred HHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeE
Q 005179 306 LCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVI 385 (710)
Q Consensus 306 L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~I 385 (710)
+....++++|+|||||||||+|++++|+.. ...++.+..+.++ .+|-|+-...++++|..++++.|.|
T Consensus 184 igidpprgvllygppg~gktml~kava~~t----------~a~firvvgsefv--qkylgegprmvrdvfrlakenapsi 251 (408)
T KOG0727|consen 184 IGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKENAPSI 251 (408)
T ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeeccHHHH--HHHhccCcHHHHHHHHHHhccCCcE
Confidence 344678899999999999999999999876 5566777777777 5677777777999999999999999
Q ss_pred EEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-------CCCeEEEEccChHHHHhhhhccHHHHc--ccc-ceEec
Q 005179 386 LFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLIS 455 (710)
Q Consensus 386 L~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v~vI~att~~~~~~~~~~d~aL~~--Rf~-~I~v~ 455 (710)
+||||+|.+..+.-..++ +...+++.+|..+|. ..++.+|.+||..+ .+||+|.| |++ .|+|+
T Consensus 252 ifideidaiatkrfdaqt--gadrevqril~ellnqmdgfdq~~nvkvimatnrad-----tldpallrpgrldrkiefp 324 (408)
T KOG0727|consen 252 IFIDEIDAIATKRFDAQT--GADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFP 324 (408)
T ss_pred EEeehhhhHhhhhccccc--cccHHHHHHHHHHHHhccCcCcccceEEEEecCccc-----ccCHhhcCCccccccccCC
Confidence 999999999866433222 446677777766654 34788999999987 79999999 887 89999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 005179 456 EPSQEDAVRILLGLREKY 473 (710)
Q Consensus 456 ~Ps~~~~~~IL~~l~~~~ 473 (710)
.|+..++.-++..+..+.
T Consensus 325 lpdrrqkrlvf~titskm 342 (408)
T KOG0727|consen 325 LPDRRQKRLVFSTITSKM 342 (408)
T ss_pred CCchhhhhhhHHhhhhcc
Confidence 999999999998887754
No 66
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.9e-16 Score=158.38 Aligned_cols=183 Identities=21% Similarity=0.333 Sum_probs=141.9
Q ss_pred CCCCcccCHHHHHHHHHHHHc--------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 288 LIDPVIGRETEIQRIIQILCR--------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~--------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
+|+++-|.+..+..+.+.+.- +...++||+||||||||.+|+++|++. +..++.+.
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv~ 159 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVS 159 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------CCCcceee
Confidence 466777888777776664211 245789999999999999999999998 77888888
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcc--------cccCC--C
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP--------SLGRG--E 423 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~--------~l~~~--~ 423 (710)
++.+. .++-|+-++.++.+|..+.+-.|+|+||||++.+.+.+.. ...++...++. +..+. .
T Consensus 160 ~s~lt--~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s------~dHEa~a~mK~eFM~~WDGl~s~~~~r 231 (386)
T KOG0737|consen 160 VSNLT--SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRS------TDHEATAMMKNEFMALWDGLSSKDSER 231 (386)
T ss_pred ccccc--hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhccc------chHHHHHHHHHHHHHHhccccCCCCce
Confidence 88877 4778999999999999998888999999999999887632 13333333321 22233 4
Q ss_pred eEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q 005179 424 LQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (710)
Q Consensus 424 v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~ 498 (710)
+.|+|+||++. .+|.++.||+. .+.|+.|+.++|.+||+-++.......+ -.+..++..+.+|.+
T Consensus 232 VlVlgATNRP~-----DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~-----vD~~~iA~~t~GySG 297 (386)
T KOG0737|consen 232 VLVLGATNRPF-----DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDD-----VDLDEIAQMTEGYSG 297 (386)
T ss_pred EEEEeCCCCCc-----cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcc-----cCHHHHHHhcCCCcH
Confidence 88999999985 89999999996 8999999999999999998875532222 236778888888865
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.1e-15 Score=163.52 Aligned_cols=202 Identities=21% Similarity=0.184 Sum_probs=145.8
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCccc------------
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------ 344 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~l------------ 344 (710)
..|.+++||.+|++++|++..++.+...+......| +||+||+|+|||++|+.+|+.+.+...+...
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 358899999999999999999999999888766555 5899999999999999999998542211100
Q ss_pred c--CceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccc
Q 005179 345 L--SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (710)
Q Consensus 345 ~--~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (710)
. ...++.++.. . ... ...++.+++.+.. ....|+||||+|.+ ....++.|+..
T Consensus 84 ~~~~~d~~~~~~~------~-~~~-v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-------------~~~a~naLLk~ 142 (363)
T PRK14961 84 KGLCLDLIEIDAA------S-RTK-VEEMREILDNIYYSPSKSRFKVYLIDEVHML-------------SRHSFNALLKT 142 (363)
T ss_pred cCCCCceEEeccc------c-cCC-HHHHHHHHHHHhcCcccCCceEEEEEChhhc-------------CHHHHHHHHHH
Confidence 0 0122332221 0 011 2235556555432 23469999999999 33456667777
Q ss_pred ccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 419 l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
++. +.+.+|.+|+... .+.+++.+||..+.+.+|+.++..++|+..+.. .++.+++++++.++..+.+
T Consensus 143 lEe~~~~~~fIl~t~~~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~----~g~~i~~~al~~ia~~s~G- 212 (363)
T PRK14961 143 LEEPPQHIKFILATTDVE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK----ESIDTDEYALKLIAYHAHG- 212 (363)
T ss_pred HhcCCCCeEEEEEcCChH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC-
Confidence 774 5667777776544 477899999999999999999999998887764 3688999999999888654
Q ss_pred hcCCCCcchHHHHHHHHHh
Q 005179 497 ISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 497 i~~r~~p~~ai~ll~~a~~ 515 (710)
.+++++.+++.++.
T Consensus 213 -----~~R~al~~l~~~~~ 226 (363)
T PRK14961 213 -----SMRDALNLLEHAIN 226 (363)
T ss_pred -----CHHHHHHHHHHHHH
Confidence 35668888887764
No 68
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.3e-15 Score=169.88 Aligned_cols=199 Identities=19% Similarity=0.159 Sum_probs=145.9
Q ss_pred hHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCcc---------------
Q 005179 280 LTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--------------- 343 (710)
Q Consensus 280 l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~--------------- 343 (710)
|.+++||.+|++++|++..++.|...+...+..| +||+||+|||||++|+.+|+.+.+...+..
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPN 82 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcc
Confidence 5678999999999999999999999998877777 589999999999999999999875432210
Q ss_pred -ccCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccc
Q 005179 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (710)
Q Consensus 344 -l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (710)
.....++++|... ..| ...++.+.+.+. .....|+||||+|.| ....+|.|+..
T Consensus 83 ~~~~~dvieidaas------~~g--vd~iRel~~~~~~~P~~~~~KVvIIDEah~L-------------t~~A~NALLK~ 141 (584)
T PRK14952 83 GPGSIDVVELDAAS------HGG--VDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-------------TTAGFNALLKI 141 (584)
T ss_pred cCCCceEEEecccc------ccC--HHHHHHHHHHHHhhhhcCCceEEEEECCCcC-------------CHHHHHHHHHH
Confidence 0112344443211 111 122344444442 234569999999999 45578888888
Q ss_pred ccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 419 l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
|++ +.+++|.+|+... .+.+++++|++.+.|..++.++..+.|..++.+ .++.++++++..++..+.+-
T Consensus 142 LEEpp~~~~fIL~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~----egi~i~~~al~~Ia~~s~Gd 212 (584)
T PRK14952 142 VEEPPEHLIFIFATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ----EGVVVDDAVYPLVIRAGGGS 212 (584)
T ss_pred HhcCCCCeEEEEEeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 986 6788888877664 667899999999999999999988888877763 37889999999988876643
Q ss_pred hcCCCCcchHHHHHHHHH
Q 005179 497 ISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 497 i~~r~~p~~ai~ll~~a~ 514 (710)
+.+++.+|+..+
T Consensus 213 ------lR~aln~Ldql~ 224 (584)
T PRK14952 213 ------PRDTLSVLDQLL 224 (584)
T ss_pred ------HHHHHHHHHHHH
Confidence 234555555543
No 69
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.5e-15 Score=168.08 Aligned_cols=200 Identities=20% Similarity=0.214 Sum_probs=145.0
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCcc--c-----------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L----------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~--l----------- 344 (710)
.|.+++||.+|+++||++..+..+...+......+ +||+||+|||||++|+.+|+.+.+...... .
T Consensus 5 ~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~ 84 (546)
T PRK14957 5 ALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINN 84 (546)
T ss_pred hHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhc
Confidence 58889999999999999999999999888766655 689999999999999999998865221100 0
Q ss_pred -cCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 345 -~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
....++.++... ..| . ..++.+++.+. .....|+||||+|.+ ....++.|+..+
T Consensus 85 ~~~~dlieidaas------~~g-v-d~ir~ii~~~~~~p~~g~~kViIIDEa~~l-------------s~~a~naLLK~L 143 (546)
T PRK14957 85 NSFIDLIEIDAAS------RTG-V-EETKEILDNIQYMPSQGRYKVYLIDEVHML-------------SKQSFNALLKTL 143 (546)
T ss_pred CCCCceEEeeccc------ccC-H-HHHHHHHHHHHhhhhcCCcEEEEEechhhc-------------cHHHHHHHHHHH
Confidence 011333333211 111 1 12444544443 234679999999999 456788888999
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ +.+.+|++|+... .+.+++++|+..+.+.+++.++....|+.++.+ .++.++++++..++..+.+-
T Consensus 144 Eepp~~v~fIL~Ttd~~-----kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~----egi~~e~~Al~~Ia~~s~Gd- 213 (546)
T PRK14957 144 EEPPEYVKFILATTDYH-----KIPVTILSRCIQLHLKHISQADIKDQLKIILAK----ENINSDEQSLEYIAYHAKGS- 213 (546)
T ss_pred hcCCCCceEEEEECChh-----hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-
Confidence 87 4677787776543 456789999999999999999988888877764 37899999999999887653
Q ss_pred cCCCCcchHHHHHHHHH
Q 005179 498 SDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~ 514 (710)
.++++.+++.++
T Consensus 214 -----lR~alnlLek~i 225 (546)
T PRK14957 214 -----LRDALSLLDQAI 225 (546)
T ss_pred -----HHHHHHHHHHHH
Confidence 234566666544
No 70
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.65 E-value=1.5e-15 Score=182.43 Aligned_cols=177 Identities=16% Similarity=0.150 Sum_probs=125.8
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcc-------------c-------------
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA-------------K------------- 362 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~-------------~------------- 362 (710)
..++++||+||||||||.||+++|... +.+++.+.++.++... .
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 345789999999999999999999988 6777788777776321 0
Q ss_pred ---------------cCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-------
Q 005179 363 ---------------ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG------- 420 (710)
Q Consensus 363 ---------------~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~------- 420 (710)
..+.-..+++.+|+.|+...|+||||||||.+..... .....+.|...|.
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccccCC
Confidence 0011123478899999999999999999999954311 1111233333332
Q ss_pred CCCeEEEEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHH--HHHHHHHHhhh
Q 005179 421 RGELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE--AINAAVHLSAR 495 (710)
Q Consensus 421 ~~~v~vI~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~--~l~~l~~ls~~ 495 (710)
...++|||||+.++ .+||+|.| ||+ .|.|+.|+..+|.+++..+.. ..++.+.++ .++.++..+.+
T Consensus 1770 ~~~VIVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~----tkg~~L~~~~vdl~~LA~~T~G 1840 (2281)
T CHL00206 1770 TRNILVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSY----TRGFHLEKKMFHTNGFGSITMG 1840 (2281)
T ss_pred CCCEEEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHh----hcCCCCCcccccHHHHHHhCCC
Confidence 34689999999987 89999999 998 899999999999998876542 123333332 25677777777
Q ss_pred hhcCCCCcchHHHHHHHHHhhh
Q 005179 496 YISDRYLPDKAIDLVDEAGSRA 517 (710)
Q Consensus 496 ~i~~r~~p~~ai~ll~~a~~~~ 517 (710)
|.+ .+...++.+|+..+
T Consensus 1841 fSG-----ADLanLvNEAaliA 1857 (2281)
T CHL00206 1841 SNA-----RDLVALTNEALSIS 1857 (2281)
T ss_pred CCH-----HHHHHHHHHHHHHH
Confidence 755 56677888877443
No 71
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.2e-15 Score=170.54 Aligned_cols=201 Identities=19% Similarity=0.204 Sum_probs=145.6
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCc-EEEcCCCChHHHHHHHHHHHHHhcCCCc-------cc------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV-------FL------ 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nv-LL~GppG~GKT~la~~la~~l~~~~~p~-------~l------ 344 (710)
-|.+++||.+|+++||++..++.|...+...+..+. ||+||+|||||++++.+|+.+.+..... ..
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C 84 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC 84 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH
Confidence 477899999999999999999999999988776665 8999999999999999999997532100 00
Q ss_pred ------cCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHh
Q 005179 345 ------LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414 (710)
Q Consensus 345 ------~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~ 414 (710)
....++++|.. ...+ .+.++.+++.+.. .+..|+||||+|.| +.+.+|.
T Consensus 85 ~~i~~g~h~D~~eldaa------s~~~--Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-------------s~~a~Na 143 (618)
T PRK14951 85 RDIDSGRFVDYTELDAA------SNRG--VDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-------------TNTAFNA 143 (618)
T ss_pred HHHHcCCCCceeecCcc------cccC--HHHHHHHHHHHHhCcccCCceEEEEEChhhC-------------CHHHHHH
Confidence 01123333321 1111 2235555555432 23469999999999 4456788
Q ss_pred hcccccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005179 415 LKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (710)
Q Consensus 415 L~~~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~l 492 (710)
|+..+++ +.+.+|.+|+... .+.+.+++||..+.|.+++.++....|+.++. ..++.++++++..++..
T Consensus 144 LLKtLEEPP~~~~fIL~Ttd~~-----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~----~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 144 MLKTLEEPPEYLKFVLATTDPQ-----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLA----AENVPAEPQALRLLARA 214 (618)
T ss_pred HHHhcccCCCCeEEEEEECCch-----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHH
Confidence 8888886 5677787776654 45678999999999999999998888887766 34889999999999988
Q ss_pred hhhhhcCCCCcchHHHHHHHHHh
Q 005179 493 SARYISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 493 s~~~i~~r~~p~~ai~ll~~a~~ 515 (710)
+.+- ..+++.+++.++.
T Consensus 215 s~Gs------lR~al~lLdq~ia 231 (618)
T PRK14951 215 ARGS------MRDALSLTDQAIA 231 (618)
T ss_pred cCCC------HHHHHHHHHHHHH
Confidence 7653 3456666665543
No 72
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=2.4e-15 Score=175.87 Aligned_cols=200 Identities=19% Similarity=0.153 Sum_probs=147.1
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~l------------- 344 (710)
.|.+++|+.+|++|||++..++.|...+...+..| +||+||+|||||++++.|++.+.+.+.+...
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 46789999999999999999999999998877777 6899999999999999999999764322110
Q ss_pred ---cCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcc
Q 005179 345 ---LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (710)
Q Consensus 345 ---~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (710)
....++.+|... ..+ ...++.+.+.+. .....|+||||+|.| ..+.+|.|+.
T Consensus 84 g~~~~~dv~eidaas------~~~--Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-------------t~~a~NaLLK 142 (824)
T PRK07764 84 GGPGSLDVTEIDAAS------HGG--VDDARELRERAFFAPAESRYKIFIIDEAHMV-------------TPQGFNALLK 142 (824)
T ss_pred CCCCCCcEEEecccc------cCC--HHHHHHHHHHHHhchhcCCceEEEEechhhc-------------CHHHHHHHHH
Confidence 112334443211 111 122334433332 234569999999999 4567889999
Q ss_pred cccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 418 SLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 418 ~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
+|++ ..+++|++|+..+ .+.+.|++|++.+.|..++.++...+|+.++. ..++.++++++..++.++.+
T Consensus 143 ~LEEpP~~~~fIl~tt~~~-----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~----~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 143 IVEEPPEHLKFIFATTEPD-----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICA----QEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHhCCCCCeEEEEEeCChh-----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC
Confidence 9986 6778888776654 46688999999999999999998888887766 34789999999998888765
Q ss_pred hhcCCCCcchHHHHHHHHH
Q 005179 496 YISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 496 ~i~~r~~p~~ai~ll~~a~ 514 (710)
.+ ..++.+|+..+
T Consensus 214 dl------R~Al~eLEKLi 226 (824)
T PRK07764 214 SV------RDSLSVLDQLL 226 (824)
T ss_pred CH------HHHHHHHHHHH
Confidence 32 45666666655
No 73
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.1e-15 Score=149.13 Aligned_cols=187 Identities=19% Similarity=0.274 Sum_probs=134.4
Q ss_pred CCCCcccCHHHHHHHHHHH-------------HcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 288 LIDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L-------------~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
...++-|.+.+|+.|++.+ ..+.+.++|+|||||||||.+|++.|... +..+..+-.
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFLKLAg 238 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFLKLAG 238 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHHHhcc
Confidence 4567889999999998864 22456789999999999999999988765 333333333
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc-------cCCCeEEE
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGELQCI 427 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l-------~~~~v~vI 427 (710)
..++ ..+.|+-...++..|..++...|.|+||||+|.+-..+.. +...+..+++..++.+| .+.++.+|
T Consensus 239 PQLV--QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfD--Sek~GDREVQRTMLELLNQLDGFss~~~vKvi 314 (424)
T KOG0652|consen 239 PQLV--QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFD--SEKAGDREVQRTMLELLNQLDGFSSDDRVKVI 314 (424)
T ss_pred hHHH--hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccc--ccccccHHHHHHHHHHHHhhcCCCCccceEEE
Confidence 3333 3356666777899999999899999999999998433221 12344556655554443 34679999
Q ss_pred EccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q 005179 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (710)
Q Consensus 428 ~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~ 498 (710)
++||..+ -+||+|.| |++ .|+|+.|+.+.|..|++-..++.....+++ .+.+++.+..|-+
T Consensus 315 AATNRvD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvN-----feELaRsTddFNG 378 (424)
T KOG0652|consen 315 AATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVN-----FEELARSTDDFNG 378 (424)
T ss_pred eeccccc-----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCC-----HHHHhhcccccCc
Confidence 9999976 68999998 887 899999999999999998777553333333 4456666555543
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=4.9e-15 Score=164.82 Aligned_cols=203 Identities=20% Similarity=0.224 Sum_probs=149.2
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCC-CCCcEEEcCCCChHHHHHHHHHHHHHhcCCC----c----c-----
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVP----V----F----- 343 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~-~~nvLL~GppG~GKT~la~~la~~l~~~~~p----~----~----- 343 (710)
..|.+++||.+|++++|++..++.|...+...+ ..++||+||+|||||++|+.+|+.+.+.... . .
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 467889999999999999999999888666544 4578999999999999999999998653210 0 0
Q ss_pred -----ccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHh
Q 005179 344 -----LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414 (710)
Q Consensus 344 -----l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~ 414 (710)
.....++++|.. ... -...++.+++.+.. ....|+||||+|.+ .....+.
T Consensus 89 ~~i~~~~h~Dv~eidaa------s~~--~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-------------s~~a~na 147 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAA------SKT--SVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-------------SKGAFNA 147 (507)
T ss_pred HHHhcCCCCcEEEeecc------CCC--CHHHHHHHHHHHHhccccCCcEEEEEEChhhc-------------CHHHHHH
Confidence 001233443321 111 12345666666543 34569999999999 3455777
Q ss_pred hcccccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005179 415 LKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (710)
Q Consensus 415 L~~~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~l 492 (710)
|...+++ ..+++|.+|+... .+.+++.+|+..+.+.+++.++...+++.++.+ .++.+++++++.++..
T Consensus 148 LLk~LEepp~~~vfI~aTte~~-----kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~----egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 148 LLKTLEEPPPHIIFIFATTEVQ-----KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ----ENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHhhcCCCEEEEEEeCChH-----HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHH
Confidence 7777775 5677777776654 567899999999999999999999999988773 4789999999999887
Q ss_pred hhhhhcCCCCcchHHHHHHHHHhh
Q 005179 493 SARYISDRYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 493 s~~~i~~r~~p~~ai~ll~~a~~~ 516 (710)
+.+. +.+++.+++.++..
T Consensus 219 s~Gs------lR~al~~Ldkai~~ 236 (507)
T PRK06645 219 SEGS------ARDAVSILDQAASM 236 (507)
T ss_pred cCCC------HHHHHHHHHHHHHh
Confidence 6653 45688888887654
No 75
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.63 E-value=3.2e-15 Score=169.06 Aligned_cols=213 Identities=23% Similarity=0.271 Sum_probs=145.6
Q ss_pred hhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh
Q 005179 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (710)
Q Consensus 277 ~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~ 356 (710)
..+|.+++|+..|++++|++..++.+...+......++||+||||||||++|+++++.........+..+..++.+|+..
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 45899999999999999999999999988877778899999999999999999998765332111111235667777543
Q ss_pred hhh----------ccc----cCc--cHH--HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccc
Q 005179 357 LMA----------GAK----ERG--ELE--ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (710)
Q Consensus 357 l~~----------g~~----~~g--~~e--~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (710)
... +.. +.+ .+. .....-...+....+.+|||||++.| ..+.++.|...
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-------------~~~~q~~LL~~ 198 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-------------HPVQMNKLLKV 198 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-------------CHHHHHHHHHH
Confidence 110 000 000 000 00000001122345679999999999 44556665544
Q ss_pred ccCC------------------------------CeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHH
Q 005179 419 LGRG------------------------------ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468 (710)
Q Consensus 419 l~~~------------------------------~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~ 468 (710)
|+++ ++++|++|+... ..+++++++||..|.+++++.+++..|++.
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p----~~L~paLrsR~~~I~f~pL~~eei~~Il~~ 274 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP----EEIPPALRSRCVEIFFRPLLDEEIKEIAKN 274 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc----ccCChHHhhhhheeeCCCCCHHHHHHHHHH
Confidence 4321 356777766543 268899999999999999999999999998
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhh
Q 005179 469 LREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (710)
Q Consensus 469 l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~ 517 (710)
.+++ .++.+++++++.+..++.. ...++.+++.|+..+
T Consensus 275 ~a~k----~~i~is~~al~~I~~y~~n-------~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 275 AAEK----IGINLEKHALELIVKYASN-------GREAVNIVQLAAGIA 312 (531)
T ss_pred HHHH----cCCCcCHHHHHHHHHhhhh-------HHHHHHHHHHHHHHH
Confidence 7774 4688999999877665431 256778888777543
No 76
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.4e-15 Score=166.99 Aligned_cols=201 Identities=22% Similarity=0.297 Sum_probs=143.2
Q ss_pred cCCCCcccCHHHHHHHHHH---HHc---------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 287 ELIDPVIGRETEIQRIIQI---LCR---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~---L~~---------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
-+|.++-|.++..+.+.++ |.. +-+..++|+||||||||.||+++|-+. +.+++++..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSG 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccc
Confidence 3678899998877666654 332 345789999999999999999999887 666677777
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhH---HHhhccccc----CCCeEEE
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI---SNLLKPSLG----RGELQCI 427 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~---~~~L~~~l~----~~~v~vI 427 (710)
++++ .-+.|--..+++++|.++++..|+|+||||+|.+-..+..+.+ ++..+. .|.|+.-|. +..+++|
T Consensus 217 S~FV--emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~G--ggnderEQTLNQlLvEmDGF~~~~gvivi 292 (596)
T COG0465 217 SDFV--EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLG--GGNDEREQTLNQLLVEMDGFGGNEGVIVI 292 (596)
T ss_pred hhhh--hhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCC--CCchHHHHHHHHHHhhhccCCCCCceEEE
Confidence 7766 3344555677999999999999999999999999665543322 223333 333333332 3468999
Q ss_pred EccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHhhhhhcCCCCc
Q 005179 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLP 503 (710)
Q Consensus 428 ~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~-l~~l~~ls~~~i~~r~~p 503 (710)
++||.++ -+|++|.| ||+ .|.++.|+...|.+|++-..+.. .+++++ +..+++.+.+|..
T Consensus 293 aaTNRpd-----VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~------~l~~~Vdl~~iAr~tpGfsG----- 356 (596)
T COG0465 293 AATNRPD-----VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK------PLAEDVDLKKIARGTPGFSG----- 356 (596)
T ss_pred ecCCCcc-----cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC------CCCCcCCHHHHhhhCCCccc-----
Confidence 9999987 78999999 997 89999999999999999655532 232221 3336666666654
Q ss_pred chHHHHHHHHHhhh
Q 005179 504 DKAIDLVDEAGSRA 517 (710)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (710)
.+...++.+|+-.+
T Consensus 357 AdL~nl~NEAal~a 370 (596)
T COG0465 357 ADLANLLNEAALLA 370 (596)
T ss_pred chHhhhHHHHHHHH
Confidence 45566776665443
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=4.3e-15 Score=167.60 Aligned_cols=202 Identities=18% Similarity=0.212 Sum_probs=148.3
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCC-CcEEEcCCCChHHHHHHHHHHHHHhcCCCccc------------c
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------L 345 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~-nvLL~GppG~GKT~la~~la~~l~~~~~p~~l------------~ 345 (710)
.|.+++||.+|+++||++..++.|...+..++.. .+||+||+|||||++|+.+++.+.+...+... .
T Consensus 5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~ 84 (709)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDA 84 (709)
T ss_pred hHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhc
Confidence 4778999999999999999999999988876544 57999999999999999999998654321100 0
Q ss_pred --CceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 346 --SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 346 --~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
...++.++.. ...+ ...++.+++.+.. ....|+||||+|.| ....++.|+..|
T Consensus 85 g~~~DvlEidaA------s~~g--Vd~IRelle~a~~~P~~gk~KVIIIDEad~L-------------s~~A~NALLKtL 143 (709)
T PRK08691 85 GRYVDLLEIDAA------SNTG--IDNIREVLENAQYAPTAGKYKVYIIDEVHML-------------SKSAFNAMLKTL 143 (709)
T ss_pred cCccceEEEecc------ccCC--HHHHHHHHHHHHhhhhhCCcEEEEEECcccc-------------CHHHHHHHHHHH
Confidence 0122333321 1111 2335566654432 34569999999998 345667777778
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ +.+.+|.+|+... .+.+.+++||..+.|.+++.++....|+.++.. .++.++++++..+++.+.+-
T Consensus 144 EEPp~~v~fILaTtd~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k----Egi~id~eAL~~Ia~~A~Gs- 213 (709)
T PRK08691 144 EEPPEHVKFILATTDPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS----EKIAYEPPALQLLGRAAAGS- 213 (709)
T ss_pred HhCCCCcEEEEEeCCcc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCCC-
Confidence 74 5677888777654 567889999999999999999999988887773 47899999999999887653
Q ss_pred cCCCCcchHHHHHHHHHhh
Q 005179 498 SDRYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~ 516 (710)
.++++.+|+.++..
T Consensus 214 -----lRdAlnLLDqaia~ 227 (709)
T PRK08691 214 -----MRDALSLLDQAIAL 227 (709)
T ss_pred -----HHHHHHHHHHHHHh
Confidence 45688888887653
No 78
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6.8e-15 Score=165.41 Aligned_cols=199 Identities=20% Similarity=0.228 Sum_probs=143.2
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCC-CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCcc--c-----------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF--L----------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~-~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~--l----------- 344 (710)
.|.+++||.+|+++||++..+..|...+...+ ..++||+||+|||||++|+.+|+.+.+...+.. .
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQ 84 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhc
Confidence 67899999999999999999888888887654 566789999999999999999999865321110 0
Q ss_pred -cCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 345 -~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
....++.++.. ...+ ...++.+.+.+. .....|+||||+|.| ..+.++.|+..|
T Consensus 85 g~hpDv~eId~a------~~~~--Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-------------t~~a~naLLk~L 143 (624)
T PRK14959 85 GMHVDVVEIDGA------SNRG--IDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-------------TREAFNALLKTL 143 (624)
T ss_pred CCCCceEEEecc------cccC--HHHHHHHHHHHHhhhhcCCceEEEEEChHhC-------------CHHHHHHHHHHh
Confidence 01123444321 1111 122333333332 234579999999999 445678888888
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ +.+++|++|+... .+.+.+.+||+.|.|.+++.++...+|+.++. ..++.+++++++.++.++.+.
T Consensus 144 EEP~~~~ifILaTt~~~-----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~----~egi~id~eal~lIA~~s~Gd- 213 (624)
T PRK14959 144 EEPPARVTFVLATTEPH-----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLG----REGVDYDPAAVRLIARRAAGS- 213 (624)
T ss_pred hccCCCEEEEEecCChh-----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC-
Confidence 75 5777888777654 45578999999999999999999888887665 347889999999999887643
Q ss_pred cCCCCcchHHHHHHHH
Q 005179 498 SDRYLPDKAIDLVDEA 513 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a 513 (710)
.++++.+|+.+
T Consensus 214 -----lR~Al~lLeql 224 (624)
T PRK14959 214 -----VRDSMSLLGQV 224 (624)
T ss_pred -----HHHHHHHHHHH
Confidence 34567777654
No 79
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.60 E-value=1.9e-13 Score=163.33 Aligned_cols=181 Identities=20% Similarity=0.292 Sum_probs=121.9
Q ss_pred CCcccCHHHHHHHHHHHHcCC---------CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh-
Q 005179 290 DPVIGRETEIQRIIQILCRRT---------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA- 359 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~~~---------~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~- 359 (710)
..++|++..++.+...+.+.. ...++|+||+|||||++|++|++.+... +..++.+|++.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~-------~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD-------EDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhhccc
Confidence 359999999999998876521 2347899999999999999999988433 34566666655431
Q ss_pred -------cc--ccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--------
Q 005179 360 -------GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (710)
Q Consensus 360 -------g~--~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------- 422 (710)
|. .+.|--+ -..+...+...+..||+||||+.+ ..++++.|.++++.|
T Consensus 638 ~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka-------------~~~v~~~Ll~~l~~g~l~d~~g~ 702 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA-------------HPDVFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred chHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC-------------CHHHHHHHHHHHhcCceecCCCe
Confidence 11 1111100 112333344556679999999988 667888888887654
Q ss_pred -----CeEEEEccChHHH--Hh------------------hhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHh-
Q 005179 423 -----ELQCIASTTQDEH--RT------------------QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA- 475 (710)
Q Consensus 423 -----~v~vI~att~~~~--~~------------------~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~- 475 (710)
+.++|.|||...- .. .-...|.|..|++ .|.+.+++.++...|+.........
T Consensus 703 ~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~ 782 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKR 782 (852)
T ss_pred EEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHH
Confidence 3447888776210 00 0113478888996 7888999999999999876654332
Q ss_pred --hc--CCCCCHHHHHHHHHH
Q 005179 476 --HH--NCKFTLEAINAAVHL 492 (710)
Q Consensus 476 --~~--~~~i~~~~l~~l~~l 492 (710)
.. .+.+++++++.++..
T Consensus 783 l~~~~~~l~i~~~a~~~L~~~ 803 (852)
T TIGR03346 783 LAERKITLELSDAALDFLAEA 803 (852)
T ss_pred HHHCCCeecCCHHHHHHHHHh
Confidence 22 367899999888765
No 80
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.7e-16 Score=153.31 Aligned_cols=166 Identities=26% Similarity=0.333 Sum_probs=128.7
Q ss_pred cCCCCcccCHHHHHHHHHHHH-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~-------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
.++.++-|.+.++..+.+.+. ...+..++|||+||||||.||+++|+.. ...++.+-
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT----------SATFlRvv 251 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT----------SATFLRVV 251 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc----------chhhhhhh
Confidence 345677888888888877542 2456789999999999999999999865 34444555
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc-------cCCCeEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGELQC 426 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l-------~~~~v~v 426 (710)
.+.++ .+|.|+-...++++|+-+..+.|+|+||||||.+-..+. .+++++..+++..++.+| .++++.|
T Consensus 252 GseLi--QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRy--ds~SggerEiQrtmLELLNQldGFdsrgDvKv 327 (440)
T KOG0726|consen 252 GSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY--DSNSGGEREIQRTMLELLNQLDGFDSRGDVKV 327 (440)
T ss_pred hHHHH--HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccc--cCCCccHHHHHHHHHHHHHhccCccccCCeEE
Confidence 56666 567777778899999999999999999999999843322 123456667766655544 3689999
Q ss_pred EEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHH
Q 005179 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLRE 471 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~ 471 (710)
|.+||.-+ .+||+|.| |++ .|.|+.|+...+..|+.-...
T Consensus 328 imATnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs 370 (440)
T KOG0726|consen 328 IMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS 370 (440)
T ss_pred EEeccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeec
Confidence 99999977 89999999 887 899999999999999875444
No 81
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.60 E-value=2.2e-14 Score=154.68 Aligned_cols=190 Identities=15% Similarity=0.258 Sum_probs=132.0
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~ 358 (710)
-|.++++|..|++++|++..++++...+..+...+++|+||||||||++|+++++.+.... .+..+..+++..+.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-----~~~~~~~i~~~~~~ 78 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNVADFF 78 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-----cccceEEechhhhh
Confidence 4788999999999999999999999988876666899999999999999999999885321 12234555554432
Q ss_pred hccc--------c---Cc-------cHHHHHHHHHHHHHh-----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhh
Q 005179 359 AGAK--------E---RG-------ELEARVTTLISEIQK-----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL 415 (710)
Q Consensus 359 ~g~~--------~---~g-------~~e~~l~~~~~~~~~-----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L 415 (710)
.... . .+ .....++.++..... ....+|||||+|.+ ..+..+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-------------~~~~~~~L 145 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-------------REDAQQAL 145 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-------------CHHHHHHH
Confidence 1100 0 00 012233444433322 23458999999988 22334555
Q ss_pred cccccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Q 005179 416 KPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (710)
Q Consensus 416 ~~~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls 493 (710)
..+++. ....+|.+++... .+.+.|.+|+..+.+.+|+.++...+++..+. ..++.+++++++.++..+
T Consensus 146 ~~~le~~~~~~~~Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~----~~~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 146 RRIMEQYSRTCRFIIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAE----AEGVDYDDDGLELIAYYA 216 (337)
T ss_pred HHHHHhccCCCeEEEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHc
Confidence 555542 3345555555433 45578999999999999999998888887766 447889999999999876
Q ss_pred hh
Q 005179 494 AR 495 (710)
Q Consensus 494 ~~ 495 (710)
.+
T Consensus 217 ~g 218 (337)
T PRK12402 217 GG 218 (337)
T ss_pred CC
Confidence 43
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.7e-14 Score=161.32 Aligned_cols=187 Identities=21% Similarity=0.226 Sum_probs=137.4
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCC-CcEEEcCCCChHHHHHHHHHHHHHhcCCCc--ccc----------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL---------- 345 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~-nvLL~GppG~GKT~la~~la~~l~~~~~p~--~l~---------- 345 (710)
.|.+++||..|++++|++..++.+...+...... .+||+||+|+|||++|+.+|+.+.+..... ...
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINT 84 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHc
Confidence 6889999999999999999999999988765544 478999999999999999999986533111 000
Q ss_pred --CceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 346 --SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 346 --~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
...+++++... ..| ...++.+++.+.. .+..|++|||+|.| ....++.|+..|
T Consensus 85 ~~h~DiieIdaas------~ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~L-------------t~~A~NaLLKtL 143 (605)
T PRK05896 85 NQSVDIVELDAAS------NNG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHML-------------STSAWNALLKTL 143 (605)
T ss_pred CCCCceEEecccc------ccC--HHHHHHHHHHHHhchhhCCcEEEEEechHhC-------------CHHHHHHHHHHH
Confidence 11233333211 111 1224555554432 23468999999999 334677888888
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
++ +.+++|.+|+... .+.+++++||+.+.+.+|+.++....|+..+.+ .++.+++++++.++.++.+
T Consensus 144 EEPp~~tvfIL~Tt~~~-----KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k----egi~Is~eal~~La~lS~G 212 (605)
T PRK05896 144 EEPPKHVVFIFATTEFQ-----KIPLTIISRCQRYNFKKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADG 212 (605)
T ss_pred HhCCCcEEEEEECCChH-----hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC
Confidence 85 4577777776543 567899999999999999999988888877763 4788999999999888765
No 83
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=9.3e-15 Score=164.82 Aligned_cols=201 Identities=19% Similarity=0.209 Sum_probs=146.5
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCcc--c-----------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L----------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~--l----------- 344 (710)
.|.+++||.+|++++|++..++.+...+...+..+ +||+||+|+|||++|+.+|+.+.+...... .
T Consensus 5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 47789999999999999999999999888766666 489999999999999999999865321110 0
Q ss_pred -cCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 345 -~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
....++.++.. ... ....++.+++.+.. .+..|+||||+|.| ....+|.|+..+
T Consensus 85 ~~~~d~~ei~~~------~~~--~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-------------s~~a~naLLK~L 143 (527)
T PRK14969 85 GRFVDLIEVDAA------SNT--QVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-------------SKSAFNAMLKTL 143 (527)
T ss_pred CCCCceeEeecc------ccC--CHHHHHHHHHHHhhCcccCCceEEEEcCcccC-------------CHHHHHHHHHHH
Confidence 01123333321 111 12335666665543 23569999999999 445678888888
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ +.+.+|.+|+... .+.+.+++||..+.|.+++.++....|..++. ..++.++++++..++..+.+.
T Consensus 144 Eepp~~~~fIL~t~d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~----~egi~~~~~al~~la~~s~Gs- 213 (527)
T PRK14969 144 EEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILE----QENIPFDATALQLLARAAAGS- 213 (527)
T ss_pred hCCCCCEEEEEEeCChh-----hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC-
Confidence 86 5678888877654 45567999999999999999998888877766 347889999999998887643
Q ss_pred cCCCCcchHHHHHHHHHh
Q 005179 498 SDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~ 515 (710)
+++++.+++.++.
T Consensus 214 -----lr~al~lldqai~ 226 (527)
T PRK14969 214 -----MRDALSLLDQAIA 226 (527)
T ss_pred -----HHHHHHHHHHHHH
Confidence 4567777776654
No 84
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.59 E-value=2.2e-14 Score=146.07 Aligned_cols=177 Identities=13% Similarity=0.143 Sum_probs=121.5
Q ss_pred CCCcc-c-CHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCcc
Q 005179 289 IDPVI-G-RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366 (710)
Q Consensus 289 l~~li-G-r~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~ 366 (710)
|++++ | ....+..+.++......++++|+||+|||||||++++++.+... +..+.++.+......
T Consensus 21 fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~~------ 87 (235)
T PRK08084 21 FASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAWF------ 87 (235)
T ss_pred ccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhhh------
Confidence 44444 4 34455555555555566789999999999999999999987532 456666665443211
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHH
Q 005179 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALA 446 (710)
Q Consensus 367 ~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~ 446 (710)
..++++.+... .+|+|||+|.+.+.. .....+.+++...+++++..+|.+++.+. ..+-...+.|+
T Consensus 88 ----~~~~~~~~~~~--dlliiDdi~~~~~~~-------~~~~~lf~l~n~~~e~g~~~li~ts~~~p-~~l~~~~~~L~ 153 (235)
T PRK08084 88 ----VPEVLEGMEQL--SLVCIDNIECIAGDE-------LWEMAIFDLYNRILESGRTRLLITGDRPP-RQLNLGLPDLA 153 (235)
T ss_pred ----hHHHHHHhhhC--CEEEEeChhhhcCCH-------HHHHHHHHHHHHHHHcCCCeEEEeCCCCh-HHcCcccHHHH
Confidence 12223333322 489999999984321 22445677777778777766666655433 22223579999
Q ss_pred ccc---cceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 447 RRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 447 ~Rf---~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
+|| ..+.+.+|+.+++.++++..+. .+++.++++++++++..+.+-
T Consensus 154 SRl~~g~~~~l~~~~~~~~~~~l~~~a~----~~~~~l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 154 SRLDWGQIYKLQPLSDEEKLQALQLRAR----LRGFELPEDVGRFLLKRLDRE 202 (235)
T ss_pred HHHhCCceeeecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhhcCC
Confidence 999 4899999999999999886554 347999999999999887764
No 85
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.6e-14 Score=161.53 Aligned_cols=199 Identities=21% Similarity=0.241 Sum_probs=142.9
Q ss_pred hHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCc-EEEcCCCChHHHHHHHHHHHHHhcC-CCcc------------cc
Q 005179 280 LTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAE-VPVF------------LL 345 (710)
Q Consensus 280 l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nv-LL~GppG~GKT~la~~la~~l~~~~-~p~~------------l~ 345 (710)
|.+++||.+|++++|+++.++.|...+......+. ||+||||||||++|+.+|+.+.+.+ .+.. ..
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 55789999999999999999999998888776666 9999999999999999999986522 1100 11
Q ss_pred CceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC
Q 005179 346 SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421 (710)
Q Consensus 346 ~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~ 421 (710)
...++.++... ..+ ...++.+.+.+.. ....|+||||+|.+ ..+.++.|...+++
T Consensus 84 h~dv~el~~~~------~~~--vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-------------s~~a~naLLk~LEe 142 (504)
T PRK14963 84 HPDVLEIDAAS------NNS--VEDVRDLREKVLLAPLRGGRKVYILDEAHMM-------------SKSAFNALLKTLEE 142 (504)
T ss_pred CCceEEecccc------cCC--HHHHHHHHHHHhhccccCCCeEEEEECcccc-------------CHHHHHHHHHHHHh
Confidence 22344444321 111 1224444444332 34569999999988 34456677777775
Q ss_pred --CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcC
Q 005179 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (710)
Q Consensus 422 --~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~ 499 (710)
..+++|.+++... .+.+.+.+|+..+.|.+|+.++....|+.++. ..++.+++++++.++..+.+.+
T Consensus 143 p~~~t~~Il~t~~~~-----kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~----~egi~i~~~Al~~ia~~s~Gdl-- 211 (504)
T PRK14963 143 PPEHVIFILATTEPE-----KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLE----AEGREAEPEALQLVARLADGAM-- 211 (504)
T ss_pred CCCCEEEEEEcCChh-----hCChHHhcceEEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCCH--
Confidence 4567777766543 57789999999999999999998888888776 4478999999999998877542
Q ss_pred CCCcchHHHHHHHHH
Q 005179 500 RYLPDKAIDLVDEAG 514 (710)
Q Consensus 500 r~~p~~ai~ll~~a~ 514 (710)
.+++.+|+.++
T Consensus 212 ----R~aln~Lekl~ 222 (504)
T PRK14963 212 ----RDAESLLERLL 222 (504)
T ss_pred ----HHHHHHHHHHH
Confidence 34556666544
No 86
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2.1e-14 Score=159.80 Aligned_cols=202 Identities=22% Similarity=0.242 Sum_probs=148.2
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCc-EEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nv-LL~GppG~GKT~la~~la~~l~~~~~p~~-------------- 343 (710)
.|.+++||.+|++++|++..+..+...+....-.+. ||+||+|+|||++|+.+++.+.+...+..
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~ 82 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALE 82 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhh
Confidence 467899999999999999999999998887766665 89999999999999999999865432210
Q ss_pred ccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 344 l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
..+..++.++.. ..+| ...++.++..+.. +...|++|||+|.| ..+.++.|+..+
T Consensus 83 ~~h~dv~eldaa------s~~g--Id~IRelie~~~~~P~~~~~KVvIIDEad~L-------------t~~A~NALLK~L 141 (535)
T PRK08451 83 NRHIDIIEMDAA------SNRG--IDDIRELIEQTKYKPSMARFKIFIIDEVHML-------------TKEAFNALLKTL 141 (535)
T ss_pred cCCCeEEEeccc------cccC--HHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------CHHHHHHHHHHH
Confidence 012233433321 1111 1234555544321 23469999999999 556788888888
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
+. ..+.+|.+|+... .+.+++++|+..++|.+++.++....++.++.. .++.++++++..++..+.+-
T Consensus 142 EEpp~~t~FIL~ttd~~-----kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~----EGi~i~~~Al~~Ia~~s~Gd- 211 (535)
T PRK08451 142 EEPPSYVKFILATTDPL-----KLPATILSRTQHFRFKQIPQNSIISHLKTILEK----EGVSYEPEALEILARSGNGS- 211 (535)
T ss_pred hhcCCceEEEEEECChh-----hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc-
Confidence 86 4567777776543 567899999999999999999988888877763 47899999999999887643
Q ss_pred cCCCCcchHHHHHHHHHhh
Q 005179 498 SDRYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~ 516 (710)
+++++.+++.++..
T Consensus 212 -----lR~alnlLdqai~~ 225 (535)
T PRK08451 212 -----LRDTLTLLDQAIIY 225 (535)
T ss_pred -----HHHHHHHHHHHHHh
Confidence 45677788776654
No 87
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.59 E-value=1.4e-14 Score=154.74 Aligned_cols=184 Identities=16% Similarity=0.211 Sum_probs=131.6
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEE-EcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhh
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL-LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL-~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l 357 (710)
.|.+++||.+|++++|+++....+...+......+++| +||||+|||++++++++.+ +..++.++...
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~~- 78 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGSD- 78 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccCc-
Confidence 57789999999999999999999999888766666666 8999999999999999877 34455555433
Q ss_pred hhccccCccHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChHH
Q 005179 358 MAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDE 434 (710)
Q Consensus 358 ~~g~~~~g~~e~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~~ 434 (710)
+. .......+......... ..+.+|||||+|.+. ..+..+.|+.+++. +...+|.+++...
T Consensus 79 --~~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~------------~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 79 --CR--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG------------LADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred --cc--HHHHHHHHHHHHHhhcccCCCeEEEEECccccc------------CHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 11 11122223222222211 346799999999881 11244555655653 5667888877654
Q ss_pred HHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHhh
Q 005179 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE---AHHNCKFTLEAINAAVHLSA 494 (710)
Q Consensus 435 ~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~---~~~~~~i~~~~l~~l~~ls~ 494 (710)
.+.+++++||..+.++.|+.+++..+++.+..+.. ...++.++++++..++..+.
T Consensus 143 -----~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 143 -----GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred -----hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC
Confidence 57799999999999999999999998887655543 24678999999888876543
No 88
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=2.9e-14 Score=161.89 Aligned_cols=201 Identities=19% Similarity=0.200 Sum_probs=145.6
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~l------------- 344 (710)
.|.+++||.+|++++|+++.++.+...+......+ +||+||+|+|||++|+.+|+.+.+...+...
T Consensus 5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN 84 (559)
T ss_pred HHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Confidence 46688999999999999999999999988766556 6789999999999999999998764322110
Q ss_pred -cCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 345 -~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
....++.+|.. ... -...++.+.+.+.. ....|+||||+|.| .....+.|+..+
T Consensus 85 g~~~dv~eidaa------s~~--~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-------------t~~a~naLLKtL 143 (559)
T PRK05563 85 GSLMDVIEIDAA------SNN--GVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-------------STGAFNALLKTL 143 (559)
T ss_pred CCCCCeEEeecc------ccC--CHHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------CHHHHHHHHHHh
Confidence 11233444321 111 12335556655542 34579999999999 344677777778
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ ..+++|.+|+... .+.+.+.+|++.+.|.+|+.++....|+.++. ..++.++++++..++..+.+-
T Consensus 144 Eepp~~~ifIlatt~~~-----ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~----~egi~i~~~al~~ia~~s~G~- 213 (559)
T PRK05563 144 EEPPAHVIFILATTEPH-----KIPATILSRCQRFDFKRISVEDIVERLKYILD----KEGIEYEDEALRLIARAAEGG- 213 (559)
T ss_pred cCCCCCeEEEEEeCChh-----hCcHHHHhHheEEecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC-
Confidence 75 4567777776543 57789999999999999999998888887776 448899999999988876542
Q ss_pred cCCCCcchHHHHHHHHHh
Q 005179 498 SDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~ 515 (710)
+.+++.+++.++.
T Consensus 214 -----~R~al~~Ldq~~~ 226 (559)
T PRK05563 214 -----MRDALSILDQAIS 226 (559)
T ss_pred -----HHHHHHHHHHHHH
Confidence 3456666665543
No 89
>PRK04195 replication factor C large subunit; Provisional
Probab=99.58 E-value=1.1e-14 Score=163.97 Aligned_cols=182 Identities=15% Similarity=0.195 Sum_probs=133.5
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCC----CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRT----KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~----~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
.|+++++|.++++++|+++.+..+..++.... ..++||+||||||||++|+++|+.+ +..++.++.
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ielna 72 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELNA 72 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEcc
Confidence 68899999999999999999999988876432 5789999999999999999999988 667777765
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHh------cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEE
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQK------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA 428 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~------~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~ 428 (710)
++... ...+..++..+.. ..+.||+|||+|.+.+.. .....+.|..++......+|.
T Consensus 73 sd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~---------d~~~~~aL~~~l~~~~~~iIl 135 (482)
T PRK04195 73 SDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE---------DRGGARAILELIKKAKQPIIL 135 (482)
T ss_pred ccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc---------chhHHHHHHHHHHcCCCCEEE
Confidence 43221 1123333333322 246799999999985421 112234455555555556666
Q ss_pred ccChHHHHhhhhccH-HHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 429 STTQDEHRTQFEKDK-ALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 429 att~~~~~~~~~~d~-aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
++|... ...+ .+++|+..|.|++|+..+...+|+.++. ..++.+++++++.++..+.+.
T Consensus 136 i~n~~~-----~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~----~egi~i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 136 TANDPY-----DPSLRELRNACLMIEFKRLSTRSIVPVLKRICR----KEGIECDDEALKEIAERSGGD 195 (482)
T ss_pred eccCcc-----ccchhhHhccceEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 666542 3444 7888999999999999999999988776 458899999999999887653
No 90
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3e-14 Score=161.78 Aligned_cols=202 Identities=19% Similarity=0.221 Sum_probs=147.3
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCC-CcEEEcCCCChHHHHHHHHHHHHHhcCC-----Ccc--c-----
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEV-----PVF--L----- 344 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~-nvLL~GppG~GKT~la~~la~~l~~~~~-----p~~--l----- 344 (710)
..|.+++||.+|+++||++..++.|...+...+.. .+||+||+|+|||++|+.+|+.+.+... |.. .
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 45788999999999999999999999988876654 4899999999999999999999865321 100 0
Q ss_pred -------cCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHH
Q 005179 345 -------LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (710)
Q Consensus 345 -------~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~ 413 (710)
....+++++.. +..| ...++.+++.+.. ....|+||||+|.| +....+
T Consensus 92 C~~i~~g~h~Dv~e~~a~------s~~g--vd~IReIie~~~~~P~~a~~KVvIIDEad~L-------------s~~a~n 150 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAA------SHTG--VDDIREIIESVRYRPVSARYKVYIIDEVHML-------------STAAFN 150 (598)
T ss_pred HHHHhcCCCCceEEeccc------ccCC--HHHHHHHHHHHHhchhcCCcEEEEEEChHhC-------------CHHHHH
Confidence 01123333321 1111 2335666665543 34569999999999 445678
Q ss_pred hhcccccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005179 414 LLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (710)
Q Consensus 414 ~L~~~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ 491 (710)
.|+.+|++ ..+.+|.+|+... .+.+.+++||+.+.|..|+.++....|+.++. ..++.+++++++.++.
T Consensus 151 aLLKtLEePp~~~~fIl~tte~~-----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~----kegi~i~~eAl~lIa~ 221 (598)
T PRK09111 151 ALLKTLEEPPPHVKFIFATTEIR-----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAA----KEGVEVEDEALALIAR 221 (598)
T ss_pred HHHHHHHhCCCCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHH
Confidence 88888886 5677777776544 45678999999999999999998888887776 4488999999999998
Q ss_pred HhhhhhcCCCCcchHHHHHHHHHh
Q 005179 492 LSARYISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 492 ls~~~i~~r~~p~~ai~ll~~a~~ 515 (710)
.+.+. +..++.+++.++.
T Consensus 222 ~a~Gd------lr~al~~Ldkli~ 239 (598)
T PRK09111 222 AAEGS------VRDGLSLLDQAIA 239 (598)
T ss_pred HcCCC------HHHHHHHHHHHHh
Confidence 87754 3456666766543
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.7e-14 Score=161.71 Aligned_cols=201 Identities=23% Similarity=0.289 Sum_probs=145.7
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCccc-----------c
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL-----------L 345 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~l-----------~ 345 (710)
..|.+++||.+|++++|++..++.|...+......+ .||+||+|+|||++|+.+|+.+.+....... .
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 367889999999999999999999999888766555 4899999999999999999998664321100 0
Q ss_pred CceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC
Q 005179 346 SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421 (710)
Q Consensus 346 ~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~ 421 (710)
...++.++. ....+ ...++.+++.+.. +...|++|||+|.| ....++.|+..|+.
T Consensus 86 ~~Dvieida------asn~~--vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-------------T~~A~NALLKtLEE 144 (725)
T PRK07133 86 SLDIIEMDA------ASNNG--VDEIRELIENVKNLPTQSKYKIYIIDEVHML-------------SKSAFNALLKTLEE 144 (725)
T ss_pred CCcEEEEec------cccCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhC-------------CHHHHHHHHHHhhc
Confidence 112222221 11111 2235566665543 34569999999999 34567888888886
Q ss_pred --CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcC
Q 005179 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (710)
Q Consensus 422 --~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~ 499 (710)
+.+++|.+|+... .+.+++++||+.+.|.+|+.++...+|+.++.+ .++.+++++++.++.++.+-
T Consensus 145 PP~~tifILaTte~~-----KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k----egI~id~eAl~~LA~lS~Gs--- 212 (725)
T PRK07133 145 PPKHVIFILATTEVH-----KIPLTILSRVQRFNFRRISEDEIVSRLEFILEK----ENISYEKNALKLIAKLSSGS--- 212 (725)
T ss_pred CCCceEEEEEcCChh-----hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC---
Confidence 4577777776554 667899999999999999999988888877664 37889999999998887643
Q ss_pred CCCcchHHHHHHHHH
Q 005179 500 RYLPDKAIDLVDEAG 514 (710)
Q Consensus 500 r~~p~~ai~ll~~a~ 514 (710)
.+.++.+++.++
T Consensus 213 ---lR~AlslLekl~ 224 (725)
T PRK07133 213 ---LRDALSIAEQVS 224 (725)
T ss_pred ---HHHHHHHHHHHH
Confidence 345666666543
No 92
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.3e-15 Score=145.35 Aligned_cols=165 Identities=22% Similarity=0.293 Sum_probs=130.9
Q ss_pred CCCCcccCHHHHHHHHHHHH-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 288 LIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~-------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
+..++-|..++|+++.+++. ...+..+|||||||||||.+|+++|++. +.-++.+-.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvig 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIG 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeehh
Confidence 56688899999998888653 2456789999999999999999999887 666777767
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc-------cCCCeEEE
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGELQCI 427 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l-------~~~~v~vI 427 (710)
+.++ .+|.|+-...++++|+-++...-+|+|+||||.+-++.-.. +.++..+++..++.++ .+|++.++
T Consensus 245 selv--qkyvgegarmvrelf~martkkaciiffdeidaiggarfdd--g~ggdnevqrtmleli~qldgfdprgnikvl 320 (435)
T KOG0729|consen 245 SELV--QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDD--GAGGDNEVQRTMLELINQLDGFDPRGNIKVL 320 (435)
T ss_pred HHHH--HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccC--CCCCcHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 7777 67888888889999999888888999999999996553221 1233445554444333 37899999
Q ss_pred EccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHH
Q 005179 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLRE 471 (710)
Q Consensus 428 ~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~ 471 (710)
.+||.+. .+||+|.| |++ .|+|..|+.+-|..|++-..+
T Consensus 321 matnrpd-----tldpallrpgrldrkvef~lpdlegrt~i~kihak 362 (435)
T KOG0729|consen 321 MATNRPD-----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK 362 (435)
T ss_pred eecCCCC-----CcCHhhcCCcccccceeccCCcccccceeEEEecc
Confidence 9999987 79999999 887 899999999999999885544
No 93
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.57 E-value=2.7e-14 Score=165.24 Aligned_cols=203 Identities=20% Similarity=0.273 Sum_probs=137.4
Q ss_pred CCCcccCHHHHHHHHHHHH------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh
Q 005179 289 IDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (710)
Q Consensus 289 l~~liGr~~~i~~l~~~L~------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~ 356 (710)
|+++.|.+...+++.+++. ...+.+++|+||||||||+++++++..+ +.+++.++.+.
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~~~ 220 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGSD 220 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEehHH
Confidence 4455666655555544332 1235679999999999999999999988 66778888776
Q ss_pred hhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC-CCChHhHHHhhcccc----cCCCeEEEEccC
Q 005179 357 LMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSL----GRGELQCIASTT 431 (710)
Q Consensus 357 l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l----~~~~v~vI~att 431 (710)
+.. .+.|.....++.++..+....|+||||||+|.+......+.+. ........+.|+..+ .+..+++|++||
T Consensus 221 ~~~--~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN 298 (644)
T PRK10733 221 FVE--MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN 298 (644)
T ss_pred hHH--hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecC
Confidence 653 3455566778889998888889999999999997654322110 111122333333222 245689999999
Q ss_pred hHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHH
Q 005179 432 QDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (710)
Q Consensus 432 ~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ 508 (710)
.++ .+|+++.| ||+ .|.|+.|+.++|.+||+.+..+..... .+ .+..+++.+.+|. +.+...
T Consensus 299 ~p~-----~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~--~~---d~~~la~~t~G~s-----gadl~~ 363 (644)
T PRK10733 299 RPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP--DI---DAAIIARGTPGFS-----GADLAN 363 (644)
T ss_pred Chh-----hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC--cC---CHHHHHhhCCCCC-----HHHHHH
Confidence 987 78999998 997 899999999999999998776432111 11 1334555555543 355666
Q ss_pred HHHHHHhhhh
Q 005179 509 LVDEAGSRAH 518 (710)
Q Consensus 509 ll~~a~~~~~ 518 (710)
++++|+..+.
T Consensus 364 l~~eAa~~a~ 373 (644)
T PRK10733 364 LVNEAALFAA 373 (644)
T ss_pred HHHHHHHHHH
Confidence 7777765443
No 94
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.57 E-value=7.6e-15 Score=141.23 Aligned_cols=196 Identities=16% Similarity=0.280 Sum_probs=141.4
Q ss_pred cchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCce
Q 005179 269 RASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (710)
Q Consensus 269 ~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~ 348 (710)
+.+.-..|..+|.+++||..+.+++|.++.++++..+...+.-+|++|.||||+||||-+..||+++....+. ..
T Consensus 6 ~~~~~~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~k-----e~ 80 (333)
T KOG0991|consen 6 EMSKSDKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYK-----EA 80 (333)
T ss_pred cCCccccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhh-----hH
Confidence 3444556667799999999999999999999999999888889999999999999999999999998432211 12
Q ss_pred EEEeehhhhhhccccCc--cHHHHHHHHHHHH-H--hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc--C
Q 005179 349 IMSLDMGLLMAGAKERG--ELEARVTTLISEI-Q--KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--R 421 (710)
Q Consensus 349 v~~ld~~~l~~g~~~~g--~~e~~l~~~~~~~-~--~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--~ 421 (710)
+.+++.+ ..+| -...+++.+-+.- . .+...|+++||+|.+ ..-++..|+..|+ .
T Consensus 81 vLELNAS------deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-------------T~gAQQAlRRtMEiyS 141 (333)
T KOG0991|consen 81 VLELNAS------DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-------------TAGAQQALRRTMEIYS 141 (333)
T ss_pred hhhccCc------cccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-------------hhHHHHHHHHHHHHHc
Confidence 3333322 2333 2233333332211 1 133568999999999 3335677777666 5
Q ss_pred CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 422 GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 422 ~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
...+++.+||..+ .+-..+.+||..+++...+..+...-|..+.+ ..+++++++.+++++-.+++.+
T Consensus 142 ~ttRFalaCN~s~-----KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k----~Ekv~yt~dgLeaiifta~GDM 208 (333)
T KOG0991|consen 142 NTTRFALACNQSE-----KIIEPIQSRCAILRYSKLSDQQILKRLLEVAK----AEKVNYTDDGLEAIIFTAQGDM 208 (333)
T ss_pred ccchhhhhhcchh-----hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHH----HhCCCCCcchHHHhhhhccchH
Confidence 6677888888765 45578899999899999988886555555544 4589999999999988877643
No 95
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3.3e-14 Score=162.23 Aligned_cols=200 Identities=19% Similarity=0.188 Sum_probs=144.7
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCcc--c-----------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L----------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~--l----------- 344 (710)
-|.+++||.+|+++||+++.++.|...+......+ +||+||+|+|||++++.+++.+.+...+.. .
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 46789999999999999999999999888766555 589999999999999999999865432110 0
Q ss_pred -cCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 345 -~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
....++.+|. ....+ ...++.+.+.+.. ....|+||||+|.| +...+|.|+.+|
T Consensus 85 g~~~d~~eid~------~s~~~--v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-------------t~~a~naLLk~L 143 (576)
T PRK14965 85 GRSVDVFEIDG------ASNTG--VDDIRELRENVKYLPSRSRYKIFIIDEVHML-------------STNAFNALLKTL 143 (576)
T ss_pred CCCCCeeeeec------cCccC--HHHHHHHHHHHHhccccCCceEEEEEChhhC-------------CHHHHHHHHHHH
Confidence 0112333322 11111 2235555555542 23468999999999 455788898889
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ ..+++|.+|+... .+.+++++||..+.|.+++.++....|..++.+ .++.++++++..++..+.+-+
T Consensus 144 Eepp~~~~fIl~t~~~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~----egi~i~~~al~~la~~a~G~l 214 (576)
T PRK14965 144 EEPPPHVKFIFATTEPH-----KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ----EGISISDAALALVARKGDGSM 214 (576)
T ss_pred HcCCCCeEEEEEeCChh-----hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCH
Confidence 86 4677887777654 567899999999999999999988888777663 488999999999988877532
Q ss_pred cCCCCcchHHHHHHHHH
Q 005179 498 SDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~ 514 (710)
++++.+++.++
T Consensus 215 ------r~al~~Ldqli 225 (576)
T PRK14965 215 ------RDSLSTLDQVL 225 (576)
T ss_pred ------HHHHHHHHHHH
Confidence 34555555443
No 96
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=8.4e-14 Score=157.53 Aligned_cols=200 Identities=21% Similarity=0.188 Sum_probs=143.1
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~l------------- 344 (710)
-|..++||.+|++++|++..+..+...+..+...+ +||+||+|+|||++|+.+|+.+.+...+...
T Consensus 5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~ 84 (563)
T PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN 84 (563)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc
Confidence 46678999999999999999999999988766555 7899999999999999999998654222110
Q ss_pred -cCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 345 -~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
....++.++. ....+ ...++.+.+.+. ..+..|++|||+|.| ....++.|+..+
T Consensus 85 ~~~~dv~~idg------as~~~--vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-------------s~~a~naLLK~L 143 (563)
T PRK06647 85 DNSLDVIEIDG------ASNTS--VQDVRQIKEEIMFPPASSRYRVYIIDEVHML-------------SNSAFNALLKTI 143 (563)
T ss_pred CCCCCeEEecC------cccCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhc-------------CHHHHHHHHHhh
Confidence 0112232221 11111 122444444333 244679999999999 445677888888
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ ..+++|.+|+... .+.+++.+||+.+.+.+++.++...+|+..+. ..++.++++++..++..+.+.
T Consensus 144 Eepp~~~vfI~~tte~~-----kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~----~egi~id~eAl~lLa~~s~Gd- 213 (563)
T PRK06647 144 EEPPPYIVFIFATTEVH-----KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCL----EDQIKYEDEALKWIAYKSTGS- 213 (563)
T ss_pred ccCCCCEEEEEecCChH-----HhHHHHHHhceEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC-
Confidence 86 5677777776643 46689999999999999999998888887665 347899999999998886643
Q ss_pred cCCCCcchHHHHHHHHH
Q 005179 498 SDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~ 514 (710)
+..++.+++.++
T Consensus 214 -----lR~alslLdkli 225 (563)
T PRK06647 214 -----VRDAYTLFDQVV 225 (563)
T ss_pred -----HHHHHHHHHHHH
Confidence 345666666544
No 97
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=7.6e-14 Score=161.49 Aligned_cols=205 Identities=23% Similarity=0.268 Sum_probs=152.5
Q ss_pred cCCCCcccCHHHHHHHHHHHH-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~-------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-.|+.+-|-+..+..|.+++. -..++.+|++||||||||..|+++|..+..+.- ...++--+
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~-----kisffmrk 336 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNR-----KISFFMRK 336 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccccc-----ccchhhhc
Confidence 357888888888877776532 134677999999999999999999998865421 11111112
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc----CCCeEEEEc
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAS 429 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~a 429 (710)
..+.. .++.|+.+..++.+|++++...|+|+|+|||+-|......-. ......+...|+.+|. +|.+++||+
T Consensus 337 gaD~l--skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq--Eqih~SIvSTLLaLmdGldsRgqVvvigA 412 (1080)
T KOG0732|consen 337 GADCL--SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ--EQIHASIVSTLLALMDGLDSRGQVVVIGA 412 (1080)
T ss_pred Cchhh--ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH--HHhhhhHHHHHHHhccCCCCCCceEEEcc
Confidence 22222 578999999999999999999999999999998876543210 1223345555655554 799999999
Q ss_pred cChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchH
Q 005179 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~a 506 (710)
||+++ .+||+|+| ||+ .+.++.|+.+.|.+|+.-...++ .-.++...+..+++.+.+|.+ .+.
T Consensus 413 TnRpd-----a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw----~~~i~~~l~~~la~~t~gy~g-----aDl 478 (1080)
T KOG0732|consen 413 TNRPD-----AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKW----EPPISRELLLWLAEETSGYGG-----ADL 478 (1080)
T ss_pred cCCcc-----ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCC----CCCCCHHHHHHHHHhccccch-----HHH
Confidence 99988 78999998 897 89999999999999998666544 356788889999999999876 234
Q ss_pred HHHHHHHH
Q 005179 507 IDLVDEAG 514 (710)
Q Consensus 507 i~ll~~a~ 514 (710)
..++.+|.
T Consensus 479 kaLCTeAa 486 (1080)
T KOG0732|consen 479 KALCTEAA 486 (1080)
T ss_pred HHHHHHHh
Confidence 44555544
No 98
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.55 E-value=1e-13 Score=150.60 Aligned_cols=201 Identities=21% Similarity=0.220 Sum_probs=141.6
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~l------------- 344 (710)
+|.+++||..|++++|++..++.+.+.+......+ +||+||||+|||++++.+++.+.+...+...
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~ 82 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS 82 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 57889999999999999999999999887765444 6899999999999999999998654221110
Q ss_pred -cCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 345 -~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
....++.++.. ... -...++.+++.+.. .+..|++|||+|.+ .....+.|...+
T Consensus 83 ~~~~~~~~~~~~------~~~--~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-------------~~~~~~~Ll~~l 141 (355)
T TIGR02397 83 GSSLDVIEIDAA------SNN--GVDDIREILDNVKYAPSSGKYKVYIIDEVHML-------------SKSAFNALLKTL 141 (355)
T ss_pred CCCCCEEEeecc------ccC--CHHHHHHHHHHHhcCcccCCceEEEEeChhhc-------------CHHHHHHHHHHH
Confidence 01223333321 011 11234556655543 33569999999998 233456666666
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ ..+.+|.+++... .+.+++.+|+..+.+++|+.++...+++..+. ..++.+++++++.++..+.+
T Consensus 142 e~~~~~~~lIl~~~~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~----~~g~~i~~~a~~~l~~~~~g-- 210 (355)
T TIGR02397 142 EEPPEHVVFILATTEPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILD----KEGIKIEDEALELIARAADG-- 210 (355)
T ss_pred hCCccceeEEEEeCCHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC--
Confidence 64 4566666665543 45688999999999999999998888887776 34788999999999887654
Q ss_pred cCCCCcchHHHHHHHHHh
Q 005179 498 SDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~ 515 (710)
.+..+...++.++.
T Consensus 211 ----~~~~a~~~lekl~~ 224 (355)
T TIGR02397 211 ----SLRDALSLLDQLIS 224 (355)
T ss_pred ----ChHHHHHHHHHHHh
Confidence 24556666666553
No 99
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.55 E-value=2.7e-14 Score=131.69 Aligned_cols=123 Identities=26% Similarity=0.392 Sum_probs=96.0
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcC-CeEEEEccch
Q 005179 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG-DVILFIDEVH 392 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~-~~IL~IDEid 392 (710)
+||+||||||||++++.+++.+ +.+++.++...+. ..+.++.+..+..++..+.... ++||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELI--SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHH--TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------ccccccccccccc--cccccccccccccccccccccccceeeeeccch
Confidence 5899999999999999999998 7889999998887 4467788899999999998876 8999999999
Q ss_pred hhhhCCCCCCCCCCChHhHHHhhccccc-----CCCeEEEEccChHHHHhhhhccHHHH-cccc-ceEec
Q 005179 393 TLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIASTTQDEHRTQFEKDKALA-RRFQ-PVLIS 455 (710)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~L~~~l~-----~~~v~vI~att~~~~~~~~~~d~aL~-~Rf~-~I~v~ 455 (710)
.+...... ........+.+.|...++ .+++.+|++|+..+ .+++.+. +||+ .|.++
T Consensus 69 ~l~~~~~~--~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 69 KLFPKSQP--SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GTSHHCST--SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE-
T ss_pred hccccccc--ccccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHhCCCcEEEEcC
Confidence 99876511 111223344555544443 24689999999866 7999999 9997 56654
No 100
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=1e-13 Score=155.19 Aligned_cols=163 Identities=15% Similarity=0.167 Sum_probs=111.3
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHH-HHHHHHHHHHhcCCeEEEEcc
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEA-RVTTLISEIQKSGDVILFIDE 390 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~-~l~~~~~~~~~~~~~IL~IDE 390 (710)
++++|||++|+|||+|++++++.+.... .+..+++++...+.... ...+.. .+..+.+.... ..+|+|||
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~-----~g~~V~Yitaeef~~el--~~al~~~~~~~f~~~y~~--~DLLlIDD 385 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY-----PGTRVRYVSSEEFTNEF--INSIRDGKGDSFRRRYRE--MDILLVDD 385 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHHHH--HHHHHhccHHHHHHHhhc--CCEEEEeh
Confidence 5689999999999999999999885421 25678888776655211 000000 11122222222 45999999
Q ss_pred chhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHcccc---ceEecCCCHHHHHHHHH
Q 005179 391 VHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ---PVLISEPSQEDAVRILL 467 (710)
Q Consensus 391 id~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~---~I~v~~Ps~~~~~~IL~ 467 (710)
|+.+.+.. .....+.+++..+.+++..+||.+...+. .+-.+++.|.+||. .+.|.+|+.+.|..||+
T Consensus 386 Iq~l~gke-------~tqeeLF~l~N~l~e~gk~IIITSd~~P~--eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 386 IQFLEDKE-------STQEEFFHTFNTLHNANKQIVLSSDRPPK--QLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred hccccCCH-------HHHHHHHHHHHHHHhcCCCEEEecCCChH--hhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 99995432 12456777777777766655554443332 22357899999996 78999999999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 468 GLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 468 ~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
..+. ..++.++++++++++....+-
T Consensus 457 kka~----~r~l~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 457 KKAV----QEQLNAPPEVLEFIASRISRN 481 (617)
T ss_pred HHHH----hcCCCCCHHHHHHHHHhccCC
Confidence 8766 458999999999998775543
No 101
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=8.7e-14 Score=152.61 Aligned_cols=201 Identities=19% Similarity=0.179 Sum_probs=140.7
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCc---cc----c-----
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV---FL----L----- 345 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~---~l----~----- 345 (710)
-|.+++||.+|++++|++..++.|...+....-.+ +||+||||+|||++|+.+|+.+.+..... .. .
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c 84 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC 84 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence 46789999999999999999999999888766655 88999999999999999999996532100 00 0
Q ss_pred ----------CceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhH
Q 005179 346 ----------SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDI 411 (710)
Q Consensus 346 ----------~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~ 411 (710)
...++.++. ....+ .+.++.+.+.+.. ....|+||||+|.+ ....
T Consensus 85 ~~c~~~~~~~~~n~~~~~~------~~~~~--id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l-------------~~~~ 143 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDA------ASNNS--VDDIRLLRENVRYGPQKGRYRVYIIDEVHML-------------SIAA 143 (397)
T ss_pred HHHHHHhcCCCCCeEeecc------cccCC--HHHHHHHHHHHhhchhcCCeEEEEEeChhhC-------------CHHH
Confidence 011222221 11111 2334555555532 34569999999999 3335
Q ss_pred HHhhcccccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 005179 412 SNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489 (710)
Q Consensus 412 ~~~L~~~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l 489 (710)
++.|..++++ ...++|.+++... .+.+++.+|+..+++.+++.++....++..+. ..++.+++++++.+
T Consensus 144 ~~~LLk~LEep~~~t~~Il~t~~~~-----kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~----~~g~~i~~~al~~l 214 (397)
T PRK14955 144 FNAFLKTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLEEIQQQLQGICE----AEGISVDADALQLI 214 (397)
T ss_pred HHHHHHHHhcCCCCeEEEEEeCChH-----HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHH
Confidence 6667777775 3566666665432 55688999999999999999998888777665 34789999999999
Q ss_pred HHHhhhhhcCCCCcchHHHHHHHHHh
Q 005179 490 VHLSARYISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 490 ~~ls~~~i~~r~~p~~ai~ll~~a~~ 515 (710)
+..+.+. +..+...++.++.
T Consensus 215 ~~~s~g~------lr~a~~~L~kl~~ 234 (397)
T PRK14955 215 GRKAQGS------MRDAQSILDQVIA 234 (397)
T ss_pred HHHcCCC------HHHHHHHHHHHHH
Confidence 9998754 3456666665543
No 102
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.9e-13 Score=151.59 Aligned_cols=200 Identities=19% Similarity=0.196 Sum_probs=141.1
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCC-CcEEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~-nvLL~GppG~GKT~la~~la~~l~~~~~p~~l------------- 344 (710)
.|.+++||.+|+++||++..+..+...+..+.-. .+||+||+|+|||++|+.+|+.+.+.......
T Consensus 6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~ 85 (451)
T PRK06305 6 VSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEIS 85 (451)
T ss_pred HHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHh
Confidence 5788999999999999999999999988776544 47899999999999999999998653211000
Q ss_pred --cCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccc
Q 005179 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (710)
Q Consensus 345 --~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (710)
....++.++ |....| ...++.+.+.+. .....|+||||+|.+ ....++.|..+
T Consensus 86 ~~~~~d~~~i~------g~~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~l-------------t~~~~n~LLk~ 144 (451)
T PRK06305 86 SGTSLDVLEID------GASHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHML-------------TKEAFNSLLKT 144 (451)
T ss_pred cCCCCceEEee------ccccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-------------CHHHHHHHHHH
Confidence 011222222 111111 112333333222 245679999999999 33457788888
Q ss_pred ccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 419 l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
+++ +.+.+|++|+... .+.+++.+|+..+.+.+++.++....|...+.+ .++.+++++++.++..+.+-
T Consensus 145 lEep~~~~~~Il~t~~~~-----kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~----eg~~i~~~al~~L~~~s~gd 215 (451)
T PRK06305 145 LEEPPQHVKFFLATTEIH-----KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ----EGIETSREALLPIARAAQGS 215 (451)
T ss_pred hhcCCCCceEEEEeCChH-----hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 876 5677777776543 567899999999999999999988888876663 47889999999999887653
Q ss_pred hcCCCCcchHHHHHHHHH
Q 005179 497 ISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 497 i~~r~~p~~ai~ll~~a~ 514 (710)
.+.++.+++..+
T Consensus 216 ------lr~a~~~Lekl~ 227 (451)
T PRK06305 216 ------LRDAESLYDYVV 227 (451)
T ss_pred ------HHHHHHHHHHHH
Confidence 235666666544
No 103
>PRK05642 DNA replication initiation factor; Validated
Probab=99.53 E-value=1.9e-13 Score=138.96 Aligned_cols=154 Identities=17% Similarity=0.206 Sum_probs=111.8
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEcc
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDE 390 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDE 390 (710)
.++++|+|++|+|||+|++++++.+... +..+++++...+... ...+++.+... .+|+|||
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~-------~~~v~y~~~~~~~~~----------~~~~~~~~~~~--d~LiiDD 105 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLDR----------GPELLDNLEQY--ELVCLDD 105 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEeeHHHHHhh----------hHHHHHhhhhC--CEEEEec
Confidence 3678899999999999999999887432 567778877666531 12333334433 3899999
Q ss_pred chhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccc---cceEecCCCHHHHHHHHH
Q 005179 391 VHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF---QPVLISEPSQEDAVRILL 467 (710)
Q Consensus 391 id~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf---~~I~v~~Ps~~~~~~IL~ 467 (710)
++.+.+.. .....+.+++....+++..++|++++.+.. +....+.|.+|| ..+.+.+|+.+++..+++
T Consensus 106 i~~~~~~~-------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~--l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 106 LDVIAGKA-------DWEEALFHLFNRLRDSGRRLLLAASKSPRE--LPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred hhhhcCCh-------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHH--cCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 99884331 113456777777777788888888776542 223479999999 478899999999999998
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 468 GLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 468 ~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
..+. ..++.++++++++++....+-
T Consensus 177 ~ka~----~~~~~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 177 LRAS----RRGLHLTDEVGHFILTRGTRS 201 (234)
T ss_pred HHHH----HcCCCCCHHHHHHHHHhcCCC
Confidence 6443 347899999999999887664
No 104
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.53 E-value=5.4e-14 Score=154.59 Aligned_cols=202 Identities=20% Similarity=0.254 Sum_probs=152.9
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCC-CCcEEEcCCCChHHHHHHHHHHHHHhcCCCcc--ccC---------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVF--LLS--------- 346 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~-~nvLL~GppG~GKT~la~~la~~l~~~~~p~~--l~~--------- 346 (710)
.|-.++||..|++++|++...+.|...+...+- ...+|.||.|||||++|+.+|+.+.+...+.. ...
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE 84 (515)
T ss_pred HHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc
Confidence 466789999999999999999999998876554 44689999999999999999999977542211 111
Q ss_pred ---ceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 347 ---KRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 347 ---~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
..++++|. .+.. -.+.++.+.+.+.- ...-|.+|||+|.| +..+.|.|+..|
T Consensus 85 g~~~DviEiDa------ASn~--gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-------------S~~afNALLKTL 143 (515)
T COG2812 85 GSLIDVIEIDA------ASNT--GVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-------------SKQAFNALLKTL 143 (515)
T ss_pred CCcccchhhhh------hhcc--ChHHHHHHHHHhccCCccccceEEEEecHHhh-------------hHHHHHHHhccc
Confidence 11222221 1111 12335666666542 44679999999999 556788888888
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ .++.+|.+||... .+.+.+.+||+.+.+...+.++....|..++. ..++.++++++..+++.+++-+
T Consensus 144 EEPP~hV~FIlATTe~~-----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~----~E~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 144 EEPPSHVKFILATTEPQ-----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILD----KEGINIEEDALSLIARAAEGSL 214 (515)
T ss_pred ccCccCeEEEEecCCcC-----cCchhhhhccccccccCCCHHHHHHHHHHHHH----hcCCccCHHHHHHHHHHcCCCh
Confidence 86 4688898888876 78999999999999999999998887777776 5589999999999998877643
Q ss_pred cCCCCcchHHHHHHHHHhh
Q 005179 498 SDRYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~~ 516 (710)
+++..++|.+...
T Consensus 215 ------RDalslLDq~i~~ 227 (515)
T COG2812 215 ------RDALSLLDQAIAF 227 (515)
T ss_pred ------hhHHHHHHHHHHc
Confidence 4577888888754
No 105
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.7e-13 Score=152.76 Aligned_cols=201 Identities=21% Similarity=0.254 Sum_probs=142.2
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCc-EEEcCCCChHHHHHHHHHHHHHhcCCCcc--c-----------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF--L----------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nv-LL~GppG~GKT~la~~la~~l~~~~~p~~--l----------- 344 (710)
+|.+++||..|++++|++..+..+...+......|. ||+||+|+|||++|+.+|+.+.+...... .
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~ 84 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDK 84 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhc
Confidence 788999999999999999999999999988666664 78999999999999999999864221110 0
Q ss_pred -cCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 345 -~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
....++.+|. ....| ...++.+.+.+.. +...|++|||+|.+ .....+.|...+
T Consensus 85 g~~~d~~eida------as~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-------------t~~a~naLLk~L 143 (486)
T PRK14953 85 GSFPDLIEIDA------ASNRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHML-------------TKEAFNALLKTL 143 (486)
T ss_pred CCCCcEEEEeC------ccCCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhc-------------CHHHHHHHHHHH
Confidence 0112333322 11111 1223444444432 34569999999998 344567777777
Q ss_pred cCC--CeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~~--~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
+.. .+++|.+|+... .+.+++.+|++.+.+.+|+.++...+|..++.+ .++.+++++++.++..+.+-
T Consensus 144 Eepp~~~v~Il~tt~~~-----kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~----egi~id~~al~~La~~s~G~- 213 (486)
T PRK14953 144 EEPPPRTIFILCTTEYD-----KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE----EKIEYEEKALDLLAQASEGG- 213 (486)
T ss_pred hcCCCCeEEEEEECCHH-----HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-
Confidence 753 556666665433 466789999999999999999998888877774 47899999999998876643
Q ss_pred cCCCCcchHHHHHHHHHh
Q 005179 498 SDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~~ 515 (710)
...++.+++.++.
T Consensus 214 -----lr~al~~Ldkl~~ 226 (486)
T PRK14953 214 -----MRDAASLLDQAST 226 (486)
T ss_pred -----HHHHHHHHHHHHH
Confidence 3456777776653
No 106
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=1.6e-13 Score=151.48 Aligned_cols=185 Identities=17% Similarity=0.242 Sum_probs=118.0
Q ss_pred cCCCCcc-cCHHHHH-HHHHHHHc-------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhh
Q 005179 287 ELIDPVI-GRETEIQ-RIIQILCR-------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (710)
Q Consensus 287 ~~l~~li-Gr~~~i~-~l~~~L~~-------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l 357 (710)
-+|++++ |....+. .....+.. ...++++|+||+|+|||+|++++++.+... +.++++++...+
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f 180 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELF 180 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHH
Confidence 3577765 6554432 22222221 123678999999999999999999998543 566777776544
Q ss_pred hhccccCccHHH-HHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHH
Q 005179 358 MAGAKERGELEA-RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436 (710)
Q Consensus 358 ~~g~~~~g~~e~-~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~ 436 (710)
... ....+.. ... .+.... ....+|+|||+|.+.+.. ....++...+..+..++..+++++...+.
T Consensus 181 ~~~--~~~~l~~~~~~-~f~~~~-~~~dvLiIDDiq~l~~k~-------~~qeelf~l~N~l~~~~k~IIlts~~~p~-- 247 (445)
T PRK12422 181 TEH--LVSAIRSGEMQ-RFRQFY-RNVDALFIEDIEVFSGKG-------ATQEEFFHTFNSLHTEGKLIVISSTCAPQ-- 247 (445)
T ss_pred HHH--HHHHHhcchHH-HHHHHc-ccCCEEEEcchhhhcCCh-------hhHHHHHHHHHHHHHCCCcEEEecCCCHH--
Confidence 311 0000000 011 111111 234599999999984431 12445566666556666666666555433
Q ss_pred hhhhccHHHHcccc---ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 437 TQFEKDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 437 ~~~~~d~aL~~Rf~---~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
.+..+++.|.+||. .+.+.+|+.+++..||+..+.. .++.++++++++++....+
T Consensus 248 ~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~----~~~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 248 DLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA----LSIRIEETALDFLIEALSS 305 (445)
T ss_pred HHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC
Confidence 22357899999994 7999999999999999987764 4789999999998876554
No 107
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.52 E-value=3.2e-13 Score=150.90 Aligned_cols=186 Identities=16% Similarity=0.219 Sum_probs=120.7
Q ss_pred CCCCcc-cCHHH--HHHHHHHHHcC--CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccc
Q 005179 288 LIDPVI-GRETE--IQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (710)
Q Consensus 288 ~l~~li-Gr~~~--i~~l~~~L~~~--~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~ 362 (710)
+|++++ |.... ...+..+.... ..++++|+||+|+|||+|++++++.+.... .+..++.++...+...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-----~~~~v~yi~~~~~~~~-- 192 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-----PNAKVVYVTSEKFTND-- 192 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHH--
Confidence 577754 54332 23333333322 235689999999999999999999985431 1566777776655421
Q ss_pred cCccHH-HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhc
Q 005179 363 ERGELE-ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441 (710)
Q Consensus 363 ~~g~~e-~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~ 441 (710)
....+. .....+.+.+. ...+|+|||+|.+.+... ...++..++....+++..++|++..++. ....+
T Consensus 193 ~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~-------~~~~l~~~~n~l~~~~~~iiits~~~p~--~l~~l 261 (450)
T PRK00149 193 FVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKER-------TQEEFFHTFNALHEAGKQIVLTSDRPPK--ELPGL 261 (450)
T ss_pred HHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCHH-------HHHHHHHHHHHHHHCCCcEEEECCCCHH--HHHHH
Confidence 111110 01122223333 245999999999844311 1345666666667777666666655543 12236
Q ss_pred cHHHHcccc---ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 442 DKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 442 d~aL~~Rf~---~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
++.+.+||. .+.+.+|+.+++..||+..+.. .++.++++++++++..+.+
T Consensus 262 ~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~ 314 (450)
T PRK00149 262 EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE----EGIDLPDEVLEFIAKNITS 314 (450)
T ss_pred HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHcCcCC
Confidence 799999995 6999999999999999988773 4789999999999877654
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.5e-13 Score=148.13 Aligned_cols=200 Identities=21% Similarity=0.208 Sum_probs=138.8
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCC-CCcEEEcCCCChHHHHHHHHHHHHHhcCCCcccc--CceEEEeehh
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL--SKRIMSLDMG 355 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~-~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~--~~~v~~ld~~ 355 (710)
.|.+++||.+|++++|++..++.+.+.+..+.. .++||+||||+|||++++.+++.+.+...+.... +..++.++..
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~ 85 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA 85 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc
Confidence 577899999999999999999999998877544 4788999999999999999999986532221111 2223333211
Q ss_pred hhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEc
Q 005179 356 LLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIAS 429 (710)
Q Consensus 356 ~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~a 429 (710)
... ....+..+++.+.. .+..|++|||+|.+. ....+.|...+++ ...++|.+
T Consensus 86 ------~~~--~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-------------~~~~~~ll~~le~~~~~~~~Il~ 144 (367)
T PRK14970 86 ------SNN--SVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-------------SAAFNAFLKTLEEPPAHAIFILA 144 (367)
T ss_pred ------cCC--CHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-------------HHHHHHHHHHHhCCCCceEEEEE
Confidence 111 11234555555432 335699999999882 2234555555654 34556666
Q ss_pred cChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHH
Q 005179 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDL 509 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~l 509 (710)
++... .+.+++.+|+..+.+.+|+.++...++...+. .+++.+++++++.++..+.+- ...++..
T Consensus 145 ~~~~~-----kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~----~~g~~i~~~al~~l~~~~~gd------lr~~~~~ 209 (367)
T PRK14970 145 TTEKH-----KIIPTILSRCQIFDFKRITIKDIKEHLAGIAV----KEGIKFEDDALHIIAQKADGA------LRDALSI 209 (367)
T ss_pred eCCcc-----cCCHHHHhcceeEecCCccHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhCCCC------HHHHHHH
Confidence 55433 56789999999999999999998888887766 458899999999999876532 3456666
Q ss_pred HHHHH
Q 005179 510 VDEAG 514 (710)
Q Consensus 510 l~~a~ 514 (710)
++..+
T Consensus 210 lekl~ 214 (367)
T PRK14970 210 FDRVV 214 (367)
T ss_pred HHHHH
Confidence 66554
No 109
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.51 E-value=4.3e-13 Score=148.06 Aligned_cols=186 Identities=16% Similarity=0.239 Sum_probs=118.4
Q ss_pred CCCC-cccCHHHH-H-HHHHHHHcC--CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccc
Q 005179 288 LIDP-VIGRETEI-Q-RIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (710)
Q Consensus 288 ~l~~-liGr~~~i-~-~l~~~L~~~--~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~ 362 (710)
+|++ ++|.+..+ . .+..+.... ..++++|+||+|+|||+|++++++++.... .+..++.++...+...
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~~~~~~-- 180 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSEKFTND-- 180 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHHHHHHH--
Confidence 5666 44655442 2 222222222 235679999999999999999999986431 1466777776654321
Q ss_pred cCccHH-HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhc
Q 005179 363 ERGELE-ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441 (710)
Q Consensus 363 ~~g~~e-~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~ 441 (710)
....+. ..+..+.+.+.. ..+|+|||+|.+.+.. .....+...+....+++..++|++...+. ....+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l~~~~-------~~~~~l~~~~n~~~~~~~~iiits~~~p~--~l~~l 249 (405)
T TIGR00362 181 FVNALRNNKMEEFKEKYRS--VDLLLIDDIQFLAGKE-------RTQEEFFHTFNALHENGKQIVLTSDRPPK--ELPGL 249 (405)
T ss_pred HHHHHHcCCHHHHHHHHHh--CCEEEEehhhhhcCCH-------HHHHHHHHHHHHHHHCCCCEEEecCCCHH--HHhhh
Confidence 000000 011222223332 3589999999985431 11334566666666666666665554443 22246
Q ss_pred cHHHHcccc---ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 442 DKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 442 d~aL~~Rf~---~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
++.+.+||. .+.+.+|+.+++..||+..+.. .++.++++++++++....+
T Consensus 250 ~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~ 302 (405)
T TIGR00362 250 EERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE----EGLELPDEVLEFIAKNIRS 302 (405)
T ss_pred hhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC
Confidence 789999995 6999999999999999988774 4789999999999877554
No 110
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.5e-13 Score=153.36 Aligned_cols=188 Identities=20% Similarity=0.197 Sum_probs=135.0
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCC---Cccc----------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEV---PVFL---------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~---p~~l---------- 344 (710)
-+.+++||.+|++++|++..+..|...+....-.+ +||+||+|||||++|+.+|+.+.+... |...
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 35678999999999999999999999887755555 889999999999999999999966321 1000
Q ss_pred ---------cCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhH
Q 005179 345 ---------LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI 411 (710)
Q Consensus 345 ---------~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~ 411 (710)
....+..+|. ....+ .+.++.+.+.+. ....-|+||||+|.+ ....
T Consensus 85 ~sC~~~~~g~~~n~~~~d~------~s~~~--vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-------------t~~a 143 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDA------ASNNS--VDDIRQLRENVRYGPQKGRYRVYIIDEVHML-------------STAA 143 (620)
T ss_pred HHHHHHhccCCCCeEEecc------cccCC--HHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-------------CHHH
Confidence 0011222221 11111 223455555542 234568999999999 3445
Q ss_pred HHhhcccccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 005179 412 SNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489 (710)
Q Consensus 412 ~~~L~~~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l 489 (710)
++.|+.+|++ +..++|.+|+... .+-+++.+|++.+.+.+++.++....++.++. ..++.+++++++.+
T Consensus 144 ~naLLK~LEePp~~tv~IL~t~~~~-----kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~----~egi~I~~eal~~L 214 (620)
T PRK14954 144 FNAFLKTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLDEIQSQLQMICR----AEGIQIDADALQLI 214 (620)
T ss_pred HHHHHHHHhCCCCCeEEEEEeCChh-----hhhHHHHhhceEEecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHH
Confidence 7888888886 4566776665432 56688999999999999999998877776665 34788999999999
Q ss_pred HHHhhhh
Q 005179 490 VHLSARY 496 (710)
Q Consensus 490 ~~ls~~~ 496 (710)
+..+.+.
T Consensus 215 a~~s~Gd 221 (620)
T PRK14954 215 ARKAQGS 221 (620)
T ss_pred HHHhCCC
Confidence 9988754
No 111
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.50 E-value=1.7e-13 Score=162.37 Aligned_cols=180 Identities=20% Similarity=0.280 Sum_probs=120.9
Q ss_pred CcccCHHHHHHHHHHHHcC------CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh-----h
Q 005179 291 PVIGRETEIQRIIQILCRR------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-----A 359 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~------~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~-----~ 359 (710)
+++|.++..+++.+.+... .+.+++|+||||||||++|+++|..+ +..++.++++.+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHc
Confidence 4889999888888765421 33468999999999999999999998 4455555433221 1
Q ss_pred c--cccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-----------------
Q 005179 360 G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----------------- 420 (710)
Q Consensus 360 g--~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----------------- 420 (710)
| ..+.|....++...+..+....+ |+||||||.+..... .+..+.|.+.++
T Consensus 391 g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~---------~~~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR---------GDPASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred CCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC---------CCHHHHHHHhcCHHhcCccccccCCceec
Confidence 1 12333333344455555544444 889999999953211 112233333322
Q ss_pred CCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHH-HHHHhhc-----CCCCCHHHHHHHHHHhh
Q 005179 421 RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLR-EKYEAHH-----NCKFTLEAINAAVHLSA 494 (710)
Q Consensus 421 ~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~-~~~~~~~-----~~~i~~~~l~~l~~ls~ 494 (710)
-+++++|+|+|... .++++|++||..|.++.|+.+++..|++..+ .+....+ ++.++++++.++++...
T Consensus 461 ~s~v~~I~TtN~~~-----~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 461 LSKVIFIATANSID-----TIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred cCCEEEEEecCCch-----hCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 14678899998864 7899999999999999999999999998644 3333333 35799999999887433
Q ss_pred h
Q 005179 495 R 495 (710)
Q Consensus 495 ~ 495 (710)
+
T Consensus 536 ~ 536 (775)
T TIGR00763 536 R 536 (775)
T ss_pred h
Confidence 3
No 112
>PRK06893 DNA replication initiation factor; Validated
Probab=99.50 E-value=2.5e-13 Score=137.80 Aligned_cols=179 Identities=12% Similarity=0.165 Sum_probs=112.4
Q ss_pred hcCCCCcccCHHHH--HHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcccc
Q 005179 286 EELIDPVIGRETEI--QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (710)
Q Consensus 286 ~~~l~~liGr~~~i--~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~ 363 (710)
+.+|+++++.+... ..+.+.......+.++|+||||||||+|++++++.+... +..+.++++.....
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~~~---- 80 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKSQY---- 80 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHhhh----
Confidence 34567777554322 122222222222336899999999999999999987543 33444554432110
Q ss_pred CccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeE-EEEccChHHHHhhhhcc
Q 005179 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQ-CIASTTQDEHRTQFEKD 442 (710)
Q Consensus 364 ~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~-vI~att~~~~~~~~~~d 442 (710)
....+++.+.. ..+|+|||++.+.+.. .....+.+++....+++..+ ++++++.+.. +-...
T Consensus 81 ------~~~~~~~~~~~--~dlLilDDi~~~~~~~-------~~~~~l~~l~n~~~~~~~~illits~~~p~~--l~~~~ 143 (229)
T PRK06893 81 ------FSPAVLENLEQ--QDLVCLDDLQAVIGNE-------EWELAIFDLFNRIKEQGKTLLLISADCSPHA--LSIKL 143 (229)
T ss_pred ------hhHHHHhhccc--CCEEEEeChhhhcCCh-------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHH--ccccc
Confidence 11233333332 3599999999984331 11334556666555555544 4555444431 11245
Q ss_pred HHHHcccc---ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 443 KALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 443 ~aL~~Rf~---~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
+.|.+|+. .+.+.+|+.+++.+||+..+. .+++.++++++++++..+.+-
T Consensus 144 ~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~----~~~l~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 144 PDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY----QRGIELSDEVANFLLKRLDRD 196 (229)
T ss_pred hhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhccCC
Confidence 89999986 789999999999999987765 447999999999999887654
No 113
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.50 E-value=2.6e-13 Score=145.06 Aligned_cols=200 Identities=18% Similarity=0.215 Sum_probs=135.7
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~ 358 (710)
.|.+++||.+|++++|+++.++.+...+......+++|+||||+|||++++.+++.+..... ...++.++.+...
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~~ 80 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDER 80 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEecccccc
Confidence 58899999999999999999999999988776678999999999999999999998843221 1223333221110
Q ss_pred hccccCccHHHHHHHHHHHHHh--cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChHH
Q 005179 359 AGAKERGELEARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDE 434 (710)
Q Consensus 359 ~g~~~~g~~e~~l~~~~~~~~~--~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~~ 434 (710)
....+...+..+...... ....+++|||+|.+. .+..+.|..+++. ....+|.+++...
T Consensus 81 ----~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-------------~~~~~~L~~~le~~~~~~~lIl~~~~~~ 143 (319)
T PRK00440 81 ----GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-------------SDAQQALRRTMEMYSQNTRFILSCNYSS 143 (319)
T ss_pred ----chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-------------HHHHHHHHHHHhcCCCCCeEEEEeCCcc
Confidence 001111222222211101 235699999999982 2233445555542 3345555555432
Q ss_pred HHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHH
Q 005179 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 435 ~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~ 514 (710)
.+.+.+.+|+..+.+.+++.++...+++..+. ..++.+++++++.++..+.+. +..++..++.++
T Consensus 144 -----~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~----~~~~~i~~~al~~l~~~~~gd------~r~~~~~l~~~~ 208 (319)
T PRK00440 144 -----KIIDPIQSRCAVFRFSPLKKEAVAERLRYIAE----NEGIEITDDALEAIYYVSEGD------MRKAINALQAAA 208 (319)
T ss_pred -----ccchhHHHHhheeeeCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHH
Confidence 45577899999999999999998888887766 447889999999999886643 445677776655
Q ss_pred h
Q 005179 515 S 515 (710)
Q Consensus 515 ~ 515 (710)
.
T Consensus 209 ~ 209 (319)
T PRK00440 209 A 209 (319)
T ss_pred H
Confidence 3
No 114
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.7e-13 Score=154.03 Aligned_cols=188 Identities=20% Similarity=0.177 Sum_probs=138.1
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCC-CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCcc-ccCc--------
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF-LLSK-------- 347 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~-~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~-l~~~-------- 347 (710)
.+|.+++|+..|++++|++..+..|...+...+ ..++||+||+|+|||++|+.+|+.+.+...... ...|
T Consensus 4 ~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred chHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 367889999999999999999999998887654 457899999999999999999999866321100 0011
Q ss_pred -------eEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhc
Q 005179 348 -------RIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK 416 (710)
Q Consensus 348 -------~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~ 416 (710)
.++.++. . .....+.++++++.+.. ....|+||||+|.| ..+.++.|+
T Consensus 84 i~~g~h~D~~ei~~------~--~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-------------t~~a~naLL 142 (620)
T PRK14948 84 IAAGNALDVIEIDA------A--SNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-------------STAAFNALL 142 (620)
T ss_pred HhcCCCccEEEEec------c--ccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-------------CHHHHHHHH
Confidence 1222221 1 11223456677666543 34569999999999 445678888
Q ss_pred ccccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhh
Q 005179 417 PSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (710)
Q Consensus 417 ~~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~ 494 (710)
..+++ +.+++|++|+... .+.+++++||..+.|..++.++....+..++.+ .++.++++++..++..+.
T Consensus 143 K~LEePp~~tvfIL~t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k----egi~is~~al~~La~~s~ 213 (620)
T PRK14948 143 KTLEEPPPRVVFVLATTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK----ESIEIEPEALTLVAQRSQ 213 (620)
T ss_pred HHHhcCCcCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcC
Confidence 88886 5677777776543 466899999999999999999888777776663 478899999988888876
Q ss_pred h
Q 005179 495 R 495 (710)
Q Consensus 495 ~ 495 (710)
+
T Consensus 214 G 214 (620)
T PRK14948 214 G 214 (620)
T ss_pred C
Confidence 5
No 115
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=1.4e-12 Score=142.20 Aligned_cols=209 Identities=21% Similarity=0.279 Sum_probs=135.1
Q ss_pred CCcccCHHHHHHHHHHHHc----CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh-------
Q 005179 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------- 358 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~----~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~------- 358 (710)
+.++||+++++.+...+.. ..+.+++|+||||||||++++.+++.+.... +..-....++.+++....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAA-EDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHh-hccCCceEEEEEECCCCCCHHHHHH
Confidence 3689999999999888753 4557899999999999999999998874311 000001345555542211
Q ss_pred ------h--ccc--cCc-cHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccc-----ccC
Q 005179 359 ------A--GAK--ERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS-----LGR 421 (710)
Q Consensus 359 ------~--g~~--~~g-~~e~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~-----l~~ 421 (710)
. +.+ ..+ ...+.+..+++.+.. ..+.||+|||+|.+.+. ..++...|... +..
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----------~~~~L~~l~~~~~~~~~~~ 163 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----------DDDLLYQLSRARSNGDLDN 163 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----------CcHHHHhHhccccccCCCC
Confidence 0 111 111 233445555555543 34688999999999622 11222233332 223
Q ss_pred CCeEEEEccChHHHHhhhhccHHHHcccc--ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcC
Q 005179 422 GELQCIASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (710)
Q Consensus 422 ~~v~vI~att~~~~~~~~~~d~aL~~Rf~--~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~ 499 (710)
.++.+|++++...+.. .+++.+.+||. .|.+++++.++..+|++...... ..+..+++++++.++..+.+.-+
T Consensus 164 ~~v~lI~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~~G- 238 (365)
T TIGR02928 164 AKVGVIGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA--FYDGVLDDGVIPLCAALAAQEHG- 238 (365)
T ss_pred CeEEEEEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHHHhcC-
Confidence 6688888888765432 46788999995 69999999999999999876521 12345888888888776654322
Q ss_pred CCCcchHHHHHHHHHhh
Q 005179 500 RYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 500 r~~p~~ai~ll~~a~~~ 516 (710)
.+..++++++.|+..
T Consensus 239 --d~R~al~~l~~a~~~ 253 (365)
T TIGR02928 239 --DARKAIDLLRVAGEI 253 (365)
T ss_pred --CHHHHHHHHHHHHHH
Confidence 356788888877643
No 116
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=6.8e-13 Score=146.95 Aligned_cols=186 Identities=18% Similarity=0.267 Sum_probs=120.3
Q ss_pred CCCCcc-cCHHHH--HHHHHHHHcC-CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccc-
Q 005179 288 LIDPVI-GRETEI--QRIIQILCRR-TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK- 362 (710)
Q Consensus 288 ~l~~li-Gr~~~i--~~l~~~L~~~-~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~- 362 (710)
+|++++ |..... ..+.++.... ..++++||||+|+|||+|++++++.+.... .+..+++++...+.....
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-----~~~~v~yi~~~~f~~~~~~ 177 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFLNDLVD 177 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHHHH
Confidence 566665 544332 2333333322 236799999999999999999999885421 145777777665542110
Q ss_pred --cCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhh
Q 005179 363 --ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440 (710)
Q Consensus 363 --~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~ 440 (710)
..+. +..+..... ..+.+|+|||++.+.+... ...++...+..+.+.+..++|++...+. ..-.
T Consensus 178 ~~~~~~----~~~f~~~~~-~~~dvLlIDDi~~l~~~~~-------~q~elf~~~n~l~~~~k~iIitsd~~p~--~l~~ 243 (440)
T PRK14088 178 SMKEGK----LNEFREKYR-KKVDVLLIDDVQFLIGKTG-------VQTELFHTFNELHDSGKQIVICSDREPQ--KLSE 243 (440)
T ss_pred HHhccc----HHHHHHHHH-hcCCEEEEechhhhcCcHH-------HHHHHHHHHHHHHHcCCeEEEECCCCHH--HHHH
Confidence 0111 112222221 2356999999999854311 1345666666666667666665544443 1224
Q ss_pred ccHHHHcccc---ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 441 KDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 441 ~d~aL~~Rf~---~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
+.+.+.+||. .+.+.+|+.+.+..||+..+. ..++.++++++++++....+.
T Consensus 244 l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~----~~~~~l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 244 FQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE----IEHGELPEEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHhccccC
Confidence 5689999996 789999999999999998766 347899999999998876543
No 117
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.49 E-value=7.1e-13 Score=152.33 Aligned_cols=211 Identities=21% Similarity=0.236 Sum_probs=137.7
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhh
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l 357 (710)
.++.+.+|+..|++++|++..+..+.+.+......+++|+||||||||++|+.++..........+..+..++.+++..+
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 56667789999999999999999988888766777899999999999999999987663221111112345566655433
Q ss_pred hhcc-----ccCccH----HHHHHHHHHH----------HHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccc
Q 005179 358 MAGA-----KERGEL----EARVTTLISE----------IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (710)
Q Consensus 358 ~~g~-----~~~g~~----e~~l~~~~~~----------~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (710)
.... ...+.. ....+..+.. +....+.+|||||++.| +...++.|...
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-------------d~~~Q~~Ll~~ 288 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-------------DPLLQNKLLKV 288 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-------------CHHHHHHHHHH
Confidence 1000 000100 0011111111 11233569999999988 33334444433
Q ss_pred ccC------------------------------CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHH
Q 005179 419 LGR------------------------------GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468 (710)
Q Consensus 419 l~~------------------------------~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~ 468 (710)
+++ ..+++|++|+... ..++++|++||..+.+++++.++...|++.
T Consensus 289 Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~----~~l~~aLrSR~~~i~~~pls~edi~~Il~~ 364 (615)
T TIGR02903 289 LEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP----EEINPALRSRCAEVFFEPLTPEDIALIVLN 364 (615)
T ss_pred HhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccc----cccCHHHHhceeEEEeCCCCHHHHHHHHHH
Confidence 332 2367777776643 157899999999999999999999999998
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhh
Q 005179 469 LREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 469 l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~ 516 (710)
.+.+ .++.+++++++.+..++.. ..++++.|..++..
T Consensus 365 ~a~~----~~v~ls~eal~~L~~ys~~-------gRraln~L~~~~~~ 401 (615)
T TIGR02903 365 AAEK----INVHLAAGVEELIARYTIE-------GRKAVNILADVYGY 401 (615)
T ss_pred HHHH----cCCCCCHHHHHHHHHCCCc-------HHHHHHHHHHHHHH
Confidence 7764 3677899988888766431 24677777666544
No 118
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.48 E-value=2.6e-13 Score=136.42 Aligned_cols=185 Identities=20% Similarity=0.260 Sum_probs=114.7
Q ss_pred CCCCcc-cCH-HHHHHHHHHHHcCCC---CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcc-
Q 005179 288 LIDPVI-GRE-TEIQRIIQILCRRTK---NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA- 361 (710)
Q Consensus 288 ~l~~li-Gr~-~~i~~l~~~L~~~~~---~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~- 361 (710)
+|+++| |.. +........+..... ++++|+||+|+|||+|++++++++.... .+.++++++...+....
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-----~~~~v~y~~~~~f~~~~~ 80 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-----PGKRVVYLSAEEFIREFA 80 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-----TTS-EEEEEHHHHHHHHH
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-----ccccceeecHHHHHHHHH
Confidence 577764 642 333334443433322 4589999999999999999999885421 26678888776654211
Q ss_pred --ccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhh
Q 005179 362 --KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439 (710)
Q Consensus 362 --~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~ 439 (710)
...+. +..+.+.+.. -.+|+|||+|.+.+.. .....+.+++....++++.++|++...+. ...
T Consensus 81 ~~~~~~~----~~~~~~~~~~--~DlL~iDDi~~l~~~~-------~~q~~lf~l~n~~~~~~k~li~ts~~~P~--~l~ 145 (219)
T PF00308_consen 81 DALRDGE----IEEFKDRLRS--ADLLIIDDIQFLAGKQ-------RTQEELFHLFNRLIESGKQLILTSDRPPS--ELS 145 (219)
T ss_dssp HHHHTTS----HHHHHHHHCT--SSEEEEETGGGGTTHH-------HHHHHHHHHHHHHHHTTSEEEEEESS-TT--TTT
T ss_pred HHHHccc----chhhhhhhhc--CCEEEEecchhhcCch-------HHHHHHHHHHHHHHhhCCeEEEEeCCCCc--ccc
Confidence 01122 2233333443 3499999999994321 11345666667777777776666644443 233
Q ss_pred hccHHHHcccc---ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 440 EKDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 440 ~~d~aL~~Rf~---~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
.+++.|.+||. .+.+.+|+.+++..|++..+. .+++.++++++++++....+-
T Consensus 146 ~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~----~~~~~l~~~v~~~l~~~~~~~ 201 (219)
T PF00308_consen 146 GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK----ERGIELPEEVIEYLARRFRRD 201 (219)
T ss_dssp TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH----HTT--S-HHHHHHHHHHTTSS
T ss_pred ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH----HhCCCCcHHHHHHHHHhhcCC
Confidence 46899999995 799999999999999998777 568899999999998876543
No 119
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.48 E-value=1e-12 Score=148.68 Aligned_cols=209 Identities=19% Similarity=0.145 Sum_probs=137.8
Q ss_pred CCcccCHHHHHHHHHHHHc----CCCCCc-EEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh------
Q 005179 290 DPVIGRETEIQRIIQILCR----RTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------ 358 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~----~~~~nv-LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~------ 358 (710)
+.+.||++|+++|...|.. ..++++ +|+|+||||||++++.+.+.+....--..+....++.+++..+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 5689999999999887653 344455 59999999999999999988743210011113455666653211
Q ss_pred -------hcc-ccCc-cHHHHHHHHHHHHHh--cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhc-ccccCCCeEE
Q 005179 359 -------AGA-KERG-ELEARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK-PSLGRGELQC 426 (710)
Q Consensus 359 -------~g~-~~~g-~~e~~l~~~~~~~~~--~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~-~~l~~~~v~v 426 (710)
.+. ...| .....+..++..+.. ....||+|||||.|... ....+.+++. .......+.+
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---------~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---------TQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc---------HHHHHHHHHHHhhccCCeEEE
Confidence 011 1111 223445666665532 23468999999999542 1222333333 2223567889
Q ss_pred EEccChHHHHhhhhccHHHHcccc--ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcc
Q 005179 427 IASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~Rf~--~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~ 504 (710)
||++|..++.. .+++.+.+||. .|.|++++.+++.+||+..+... ...+++++++.+++++...-+ -.+
T Consensus 906 IGISNdlDLpe--rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~SG---DAR 976 (1164)
T PTZ00112 906 IAISNTMDLPE--RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVSG---DIR 976 (1164)
T ss_pred EEecCchhcch--hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcCC---HHH
Confidence 99998765433 46789999986 59999999999999999877643 346899999999886664332 246
Q ss_pred hHHHHHHHHHhh
Q 005179 505 KAIDLVDEAGSR 516 (710)
Q Consensus 505 ~ai~ll~~a~~~ 516 (710)
+|+++|..|+..
T Consensus 977 KALDILRrAgEi 988 (1164)
T PTZ00112 977 KALQICRKAFEN 988 (1164)
T ss_pred HHHHHHHHHHhh
Confidence 789999988753
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=6.1e-13 Score=152.63 Aligned_cols=187 Identities=19% Similarity=0.202 Sum_probs=131.6
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCC-Cc--cc----------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEV-PV--FL---------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~-p~--~l---------- 344 (710)
.|.+++||.+|+++||++..++.|...+..+...+ +||+||+|+|||++++.+++.+.+... +. ..
T Consensus 5 ~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 5 VLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHh
Confidence 46789999999999999999999988887655544 589999999999999999999864221 10 00
Q ss_pred --cCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccc
Q 005179 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (710)
Q Consensus 345 --~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (710)
.+..++.++.. ...+ ...++.+++.+.. ....|+||||+|.| ..+..+.|+.+
T Consensus 85 ~~~~~d~~~i~~~------~~~~--vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-------------~~~a~naLLk~ 143 (585)
T PRK14950 85 EGSAVDVIEMDAA------SHTS--VDDAREIIERVQFRPALARYKVYIIDEVHML-------------STAAFNALLKT 143 (585)
T ss_pred cCCCCeEEEEecc------ccCC--HHHHHHHHHHHhhCcccCCeEEEEEeChHhC-------------CHHHHHHHHHH
Confidence 01122333221 1111 1224455544432 34569999999999 33456777777
Q ss_pred ccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 419 l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
+++ ...++|.+++... .+.+.+.+|+..+.|..++..+...+++.++. ..++.++++++..++..+.+
T Consensus 144 LEepp~~tv~Il~t~~~~-----kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~----~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 144 LEEPPPHAIFILATTEVH-----KVPATILSRCQRFDFHRHSVADMAAHLRKIAA----AEGINLEPGALEAIARAATG 213 (585)
T ss_pred HhcCCCCeEEEEEeCChh-----hhhHHHHhccceeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC
Confidence 775 4566666665433 45688999999999999999998888877766 34788999999988887654
No 121
>PRK08727 hypothetical protein; Validated
Probab=99.48 E-value=8.6e-13 Score=134.23 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=113.3
Q ss_pred CCCCcccCH-HHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCcc
Q 005179 288 LIDPVIGRE-TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366 (710)
Q Consensus 288 ~l~~liGr~-~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~ 366 (710)
+|+++++.. ..+..+.........+.++|+|++|||||+|+++++..+... +..+.++.+..+.
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~~~~~-------- 81 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPLQAAA-------- 81 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeHHHhh--------
Confidence 455555444 344444333333344569999999999999999999987543 4555565544322
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHH
Q 005179 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALA 446 (710)
Q Consensus 367 ~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~ 446 (710)
..+...++.+.. ..+|+|||++.+.+.. .....+.+++....+++ ..+|.+++... ..+...++.|.
T Consensus 82 --~~~~~~~~~l~~--~dlLiIDDi~~l~~~~-------~~~~~lf~l~n~~~~~~-~~vI~ts~~~p-~~l~~~~~dL~ 148 (233)
T PRK08727 82 --GRLRDALEALEG--RSLVALDGLESIAGQR-------EDEVALFDFHNRARAAG-ITLLYTARQMP-DGLALVLPDLR 148 (233)
T ss_pred --hhHHHHHHHHhc--CCEEEEeCcccccCCh-------HHHHHHHHHHHHHHHcC-CeEEEECCCCh-hhhhhhhHHHH
Confidence 223444554443 3489999999884321 11233444444443344 33444444221 12334679999
Q ss_pred cccc---ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 447 RRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 447 ~Rf~---~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
+||. .+.+++|+.+++..|++..+.. .++.++++++++++..+.|.
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~----~~l~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQR----RGLALDEAAIDWLLTHGERE 197 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCC
Confidence 9973 7899999999999999986653 47899999999999887653
No 122
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=7.9e-14 Score=139.84 Aligned_cols=166 Identities=21% Similarity=0.276 Sum_probs=129.5
Q ss_pred cCCCCcccCHHHHHHHHHHHHc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~-------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-+|+.+-|--.+++.+.+.+.- ..+..++||||||+|||.++++++..+ +...+.+.
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~ 198 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKVV 198 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEee
Confidence 3788899988888888876432 234457999999999999999999988 77788887
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-------CCCeEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQC 426 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------~~~v~v 426 (710)
.+.+. .++.|+....+++.+..+....++|||+||||.+.+...+..+ .....++..|..++. .+++.+
T Consensus 199 ss~lv--~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~T--s~dreiqrTLMeLlnqmdgfd~l~rVk~ 274 (388)
T KOG0651|consen 199 SSALV--DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGT--SSDREIQRTLMELLNQMDGFDTLHRVKT 274 (388)
T ss_pred Hhhhh--hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEecccc--chhHHHHHHHHHHHHhhccchhcccccE
Confidence 78887 5689999999999999999999999999999998664322111 223444444443332 478999
Q ss_pred EEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHH
Q 005179 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLRE 471 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~ 471 (710)
|.|||.++ .++|+|.| |++ .++++.|+...|..|++-...
T Consensus 275 ImatNrpd-----tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~ 317 (388)
T KOG0651|consen 275 IMATNRPD-----TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQ 317 (388)
T ss_pred EEecCCcc-----ccchhhcCCccccceeccCCcchhhceeeEeeccc
Confidence 99999987 78999999 887 799999999999888774433
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=6e-13 Score=152.30 Aligned_cols=200 Identities=20% Similarity=0.189 Sum_probs=144.0
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCc---------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV--------------- 342 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~--------------- 342 (710)
-+.+++||..|++++|+++.++.+...+..+.-.+ +||+||+|+|||++|+.+|+.+.+.....
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~ 85 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFN 85 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHh
Confidence 35678999999999999999999999988766666 68999999999999999999986432110
Q ss_pred cccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccc
Q 005179 343 FLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (710)
Q Consensus 343 ~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (710)
......++.+|.. ... -...++.+++.+.. ++.-|++|||+|.| ..+.++.|+.+
T Consensus 86 ~~~~~n~~~ld~~------~~~--~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-------------s~~a~naLLK~ 144 (614)
T PRK14971 86 EQRSYNIHELDAA------SNN--SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-------------SQAAFNAFLKT 144 (614)
T ss_pred cCCCCceEEeccc------ccC--CHHHHHHHHHHHhhCcccCCcEEEEEECcccC-------------CHHHHHHHHHH
Confidence 0011233333321 111 12335555555532 33568999999999 44567888888
Q ss_pred ccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 419 l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
|++ ...++|.+|+... .+-+++++|+..+.|.+++.++....|+.++. ..++.+++++++.++..+.+.
T Consensus 145 LEepp~~tifIL~tt~~~-----kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~----~egi~i~~~al~~La~~s~gd 215 (614)
T PRK14971 145 LEEPPSYAIFILATTEKH-----KILPTILSRCQIFDFNRIQVADIVNHLQYVAS----KEGITAEPEALNVIAQKADGG 215 (614)
T ss_pred HhCCCCCeEEEEEeCCch-----hchHHHHhhhheeecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC
Confidence 886 4567777776533 56789999999999999999998888887766 348899999999999887653
Q ss_pred hcCCCCcchHHHHHHHHH
Q 005179 497 ISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 497 i~~r~~p~~ai~ll~~a~ 514 (710)
+ +.++.+++..+
T Consensus 216 l------r~al~~Lekl~ 227 (614)
T PRK14971 216 M------RDALSIFDQVV 227 (614)
T ss_pred H------HHHHHHHHHHH
Confidence 2 34555555443
No 124
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.47 E-value=6.6e-12 Score=138.42 Aligned_cols=207 Identities=16% Similarity=0.189 Sum_probs=134.5
Q ss_pred CCcccCHHHHHHHHHHHHc----CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhh--------
Q 005179 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL-------- 357 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~----~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l-------- 357 (710)
+.++||+++++++...+.. ..+.+++|+||||+|||++++.+++.+.... .+..++.+++...
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHHH
Confidence 4589999999999888743 3457899999999999999999999875432 1344555554221
Q ss_pred --h---hc--cccCc-cHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccc--ccCCCeEE
Q 005179 358 --M---AG--AKERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS--LGRGELQC 426 (710)
Q Consensus 358 --~---~g--~~~~g-~~e~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~--l~~~~v~v 426 (710)
. .+ ....+ .+.+.+..+.+.+.. ..+.||+|||+|.+... .....+..++... +...++.+
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~--------~~~~~l~~l~~~~~~~~~~~v~v 176 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEK--------EGNDVLYSLLRAHEEYPGARIGV 176 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhcc--------CCchHHHHHHHhhhccCCCeEEE
Confidence 1 01 01112 234444555555443 34689999999999621 1112233332211 12336778
Q ss_pred EEccChHHHHhhhhccHHHHcccc--ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcc
Q 005179 427 IASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~Rf~--~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~ 504 (710)
|++++...... .+++.+.+||. .|.+++++.++..+||+..+... ..+..+++++++.+++.+.+..+ ...
T Consensus 177 I~i~~~~~~~~--~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~~G---d~r 249 (394)
T PRK00411 177 IGISSDLTFLY--ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--FYPGVVDDEVLDLIADLTAREHG---DAR 249 (394)
T ss_pred EEEECCcchhh--hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--cccCCCCHhHHHHHHHHHHHhcC---cHH
Confidence 88877654333 36788888884 78999999999999999776431 22446899999999988866432 246
Q ss_pred hHHHHHHHHHhh
Q 005179 505 KAIDLVDEAGSR 516 (710)
Q Consensus 505 ~ai~ll~~a~~~ 516 (710)
.+++++..|+..
T Consensus 250 ~a~~ll~~a~~~ 261 (394)
T PRK00411 250 VAIDLLRRAGLI 261 (394)
T ss_pred HHHHHHHHHHHH
Confidence 778888777643
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=1e-12 Score=145.68 Aligned_cols=190 Identities=18% Similarity=0.171 Sum_probs=119.5
Q ss_pred cCCCCcc-cCHHH--HHHHHHHHHcC--CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcc
Q 005179 287 ELIDPVI-GRETE--IQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361 (710)
Q Consensus 287 ~~l~~li-Gr~~~--i~~l~~~L~~~--~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~ 361 (710)
-+|++++ |.... ...+..+.... ..++++|+|++|+|||+|++++++.+.... .+..++++....+....
T Consensus 112 ~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~~~ 186 (450)
T PRK14087 112 NTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFARKA 186 (450)
T ss_pred cchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHH
Confidence 3666665 54333 22233333222 235688999999999999999999875321 25677787776654221
Q ss_pred ccCccHH---HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhh
Q 005179 362 KERGELE---ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438 (710)
Q Consensus 362 ~~~g~~e---~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~ 438 (710)
...+. ..+..+.+... ...+|+|||++.+.+.. .....+..++....+++..++|.+...++. .
T Consensus 187 --~~~l~~~~~~~~~~~~~~~--~~dvLiIDDiq~l~~k~-------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~--l 253 (450)
T PRK14087 187 --VDILQKTHKEIEQFKNEIC--QNDVLIIDDVQFLSYKE-------KTNEIFFTIFNNFIENDKQLFFSSDKSPEL--L 253 (450)
T ss_pred --HHHHHHhhhHHHHHHHHhc--cCCEEEEeccccccCCH-------HHHHHHHHHHHHHHHcCCcEEEECCCCHHH--H
Confidence 11111 11222222222 34589999999984321 113456666666666776555554444431 2
Q ss_pred hhccHHHHcccc---ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 439 FEKDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 439 ~~~d~aL~~Rf~---~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
-.+++.|.+||. .+.+.+|+.+++.+||+..+... ...+.++++++++++..+.+.
T Consensus 254 ~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~--gl~~~l~~evl~~Ia~~~~gd 312 (450)
T PRK14087 254 NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ--NIKQEVTEEAINFISNYYSDD 312 (450)
T ss_pred hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHccCCC
Confidence 246899999996 79999999999999999877642 112379999999998886653
No 126
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.1e-12 Score=132.29 Aligned_cols=191 Identities=19% Similarity=0.203 Sum_probs=124.7
Q ss_pred CCcchhHHHhhhhhHHhh---hhc--CCCCcccCHHHHHHHHHHHH--------cCCCCCcEEEcCCCChHHHHHHHHHH
Q 005179 267 RTRASALEQFCVDLTARA---SEE--LIDPVIGRETEIQRIIQILC--------RRTKNNPILLGESGVGKTAIAEGLAI 333 (710)
Q Consensus 267 ~~~~~~l~~~~~~l~~~~---~~~--~l~~liGr~~~i~~l~~~L~--------~~~~~nvLL~GppG~GKT~la~~la~ 333 (710)
+|+.-.+..+-..+.-.. ..| -|+.+|-.-..-.++..+-. +..-+|+++|||||||||.+|+.||+
T Consensus 327 ~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr 406 (630)
T KOG0742|consen 327 FPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELAR 406 (630)
T ss_pred CCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHh
Confidence 345555666655554322 222 37788877655555554321 12237899999999999999999998
Q ss_pred HHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCCCCCCCChHhHH
Q 005179 334 RIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDIS 412 (710)
Q Consensus 334 ~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~ 412 (710)
.. +...-.+..+++ .....+-...++.+|+.++++ .+.+|||||.|.++-......- ++......
T Consensus 407 ~S----------GlDYA~mTGGDV---APlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktym-SEaqRsaL 472 (630)
T KOG0742|consen 407 HS----------GLDYAIMTGGDV---APLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYM-SEAQRSAL 472 (630)
T ss_pred hc----------CCceehhcCCCc---cccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhh-cHHHHHHH
Confidence 75 222111111111 011123455689999999875 4788999999988754332111 12223333
Q ss_pred Hhhc-cc-ccCCCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhh
Q 005179 413 NLLK-PS-LGRGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAH 476 (710)
Q Consensus 413 ~~L~-~~-l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~ 476 (710)
|.|+ .. -...+++++.+||.++ .+|.++.+||+ .|+|+.|-.++|..+|...+.+|...
T Consensus 473 NAlLfRTGdqSrdivLvlAtNrpg-----dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~ 534 (630)
T KOG0742|consen 473 NALLFRTGDQSRDIVLVLATNRPG-----DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILK 534 (630)
T ss_pred HHHHHHhcccccceEEEeccCCcc-----chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcC
Confidence 4332 11 1256789999999987 88999999997 89999999999999999988888643
No 127
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.41 E-value=4.8e-12 Score=135.54 Aligned_cols=163 Identities=18% Similarity=0.212 Sum_probs=112.6
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcc--ccCccHHHHHHHHHHHHHhcCCeEEEE
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA--KERGELEARVTTLISEIQKSGDVILFI 388 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~--~~~g~~e~~l~~~~~~~~~~~~~IL~I 388 (710)
.++++|+|+.|.|||+|+++++....... .+..++.+....+.... ..+..-.+.++... .-.+|+|
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~-----~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y------~~dlllI 181 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANG-----PNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY------SLDLLLI 181 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhC-----CCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh------ccCeeee
Confidence 67889999999999999999999885532 24566666554433110 00000001112211 1238999
Q ss_pred ccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHcccc---ceEecCCCHHHHHHH
Q 005179 389 DEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ---PVLISEPSQEDAVRI 465 (710)
Q Consensus 389 DEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~---~I~v~~Ps~~~~~~I 465 (710)
||++.+.+... ...++.+.+..+.+.++.+++.+...+. ..-.+.+.|.+||. .+.+.+|+.+.+..|
T Consensus 182 DDiq~l~gk~~-------~qeefFh~FN~l~~~~kqIvltsdr~P~--~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 182 DDIQFLAGKER-------TQEEFFHTFNALLENGKQIVLTSDRPPK--ELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred chHhHhcCChh-------HHHHHHHHHHHHHhcCCEEEEEcCCCch--hhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 99999965432 2667888888888888755555544433 23346799999996 799999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 466 LLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 466 L~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
|+.... ..++.++++++.+++....+-+
T Consensus 253 L~kka~----~~~~~i~~ev~~~la~~~~~nv 280 (408)
T COG0593 253 LRKKAE----DRGIEIPDEVLEFLAKRLDRNV 280 (408)
T ss_pred HHHHHH----hcCCCCCHHHHHHHHHHhhccH
Confidence 998555 5689999999999987765543
No 128
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=1.9e-12 Score=140.51 Aligned_cols=174 Identities=14% Similarity=0.172 Sum_probs=118.9
Q ss_pred CCCCcccCHHHHHHHHHHHHcCC----------CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCcc-c------------
Q 005179 288 LIDPVIGRETEIQRIIQILCRRT----------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF-L------------ 344 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~~~----------~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~-l------------ 344 (710)
.|++++|++..++.|...+..+. +..+||+||+|+|||++|+.+|+.+.+...... .
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 46789999999999999887753 455899999999999999999999866431100 0
Q ss_pred cCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc
Q 005179 345 LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG 420 (710)
Q Consensus 345 ~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~ 420 (710)
....+..+... +. . -....++.+++.+.. .+..|+||||+|.+ ....+|.|+..|+
T Consensus 83 ~hpD~~~i~~~----~~-~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-------------~~~aanaLLk~LE 142 (394)
T PRK07940 83 THPDVRVVAPE----GL-S--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-------------TERAANALLKAVE 142 (394)
T ss_pred CCCCEEEeccc----cc-c--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-------------CHHHHHHHHHHhh
Confidence 00112222111 00 0 112335666666543 34569999999999 4446677888887
Q ss_pred C---CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 421 R---GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 421 ~---~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
+ +.+.+++|++.. .+.|++++||+.+.|++|+.++..++|.. + ..++++.+..++.++.+.
T Consensus 143 ep~~~~~fIL~a~~~~------~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~------~~~~~~~a~~la~~s~G~ 206 (394)
T PRK07940 143 EPPPRTVWLLCAPSPE------DVLPTIRSRCRHVALRTPSVEAVAEVLVR---R------DGVDPETARRAARASQGH 206 (394)
T ss_pred cCCCCCeEEEEECChH------HChHHHHhhCeEEECCCCCHHHHHHHHHH---h------cCCCHHHHHHHHHHcCCC
Confidence 6 455566666643 67899999999999999999997766652 1 136677777787777664
No 129
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.41 E-value=4.4e-12 Score=131.38 Aligned_cols=163 Identities=19% Similarity=0.249 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh------hhhhhccc-c--CccHHH
Q 005179 299 IQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM------GLLMAGAK-E--RGELEA 369 (710)
Q Consensus 299 i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~------~~l~~g~~-~--~g~~e~ 369 (710)
++++...+. .+.+++|+||||||||++|+++|+.+ +.+++.+++ .+++.... + ......
T Consensus 11 ~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~ 78 (262)
T TIGR02640 11 TSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQ 78 (262)
T ss_pred HHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHH
Confidence 344444444 35789999999999999999999876 445554433 22221100 0 000000
Q ss_pred HH----------------HHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-----------
Q 005179 370 RV----------------TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------- 422 (710)
Q Consensus 370 ~l----------------~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~----------- 422 (710)
.+ ..++..+. .+.+|+|||++.+ ..++++.|..+|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~-------------~~~~q~~Ll~~Le~~~~~i~~~~~~~ 143 (262)
T TIGR02640 79 FIHNVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRS-------------KPETNNVLLSVFEEGVLELPGKRGTS 143 (262)
T ss_pred HHHHhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhC-------------CHHHHHHHHHHhcCCeEEccCCCCCC
Confidence 00 01111122 3469999999998 456677776666532
Q ss_pred -------CeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 423 -------ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 423 -------~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
.+++|+|+|+..|....+++++|.+||..+.++.|+.++..+|++... .+.++.++.++.+...
T Consensus 144 ~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---------~~~~~~~~~iv~~~~~ 214 (262)
T TIGR02640 144 RYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT---------DVAEDSAATIVRLVRE 214 (262)
T ss_pred ceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---------CCCHHHHHHHHHHHHH
Confidence 467999999887776667889999999999999999999888887532 3677788888877665
Q ss_pred hh
Q 005179 496 YI 497 (710)
Q Consensus 496 ~i 497 (710)
.-
T Consensus 215 ~R 216 (262)
T TIGR02640 215 FR 216 (262)
T ss_pred HH
Confidence 44
No 130
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.41 E-value=7.5e-12 Score=126.96 Aligned_cols=188 Identities=15% Similarity=0.183 Sum_probs=117.2
Q ss_pred CCCcc--cCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCcc
Q 005179 289 IDPVI--GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366 (710)
Q Consensus 289 l~~li--Gr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~ 366 (710)
|++++ +.+..++.+.+++......+++|+||+|||||++++++++..... +..++.+++..+...
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~~------ 80 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQA------ 80 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHHh------
Confidence 44444 245577777777666677899999999999999999999987432 456777777665421
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHH
Q 005179 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALA 446 (710)
Q Consensus 367 ~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~ 446 (710)
...++..+.. ..+|+|||+|.+.... .....+..++......+..+++++++... ......+.|.
T Consensus 81 ----~~~~~~~~~~--~~lLvIDdi~~l~~~~-------~~~~~L~~~l~~~~~~~~~iIits~~~~~--~~~~~~~~L~ 145 (226)
T TIGR03420 81 ----DPEVLEGLEQ--ADLVCLDDVEAIAGQP-------EWQEALFHLYNRVREAGGRLLIAGRAAPA--QLPLRLPDLR 145 (226)
T ss_pred ----HHHHHhhccc--CCEEEEeChhhhcCCh-------HHHHHHHHHHHHHHHcCCeEEEECCCChH--HCCcccHHHH
Confidence 1223332322 3489999999983210 00223344433333334433443333322 1111237888
Q ss_pred cccc---ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHH
Q 005179 447 RRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 447 ~Rf~---~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~ 514 (710)
+||. .|.+++|+.+++..+++.... ..++.+++++++.++..+.+- +..+..+++.+.
T Consensus 146 ~r~~~~~~i~l~~l~~~e~~~~l~~~~~----~~~~~~~~~~l~~L~~~~~gn------~r~L~~~l~~~~ 206 (226)
T TIGR03420 146 TRLAWGLVFQLPPLSDEEKIAALQSRAA----RRGLQLPDEVADYLLRHGSRD------MGSLMALLDALD 206 (226)
T ss_pred HHHhcCeeEecCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhccCC------HHHHHHHHHHHH
Confidence 8874 789999999999999876554 347889999998887754432 344555555543
No 131
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.40 E-value=9.4e-12 Score=138.33 Aligned_cols=96 Identities=11% Similarity=0.136 Sum_probs=63.0
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHH
Q 005179 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDA 462 (710)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~ 462 (710)
+.|+++.|+|.++.... ....+.++....-..++.+||.+.+. .+++.|.+-+..+.++.|+.+++
T Consensus 82 ~~~~vl~d~h~~~~~~~-------~~r~l~~l~~~~~~~~~~~i~~~~~~-------~~p~el~~~~~~~~~~lP~~~ei 147 (489)
T CHL00195 82 PALFLLKDFNRFLNDIS-------ISRKLRNLSRILKTQPKTIIIIASEL-------NIPKELKDLITVLEFPLPTESEI 147 (489)
T ss_pred CcEEEEecchhhhcchH-------HHHHHHHHHHHHHhCCCEEEEEcCCC-------CCCHHHHhceeEEeecCcCHHHH
Confidence 68999999999973211 11222222221222344444443322 46677877777889999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 463 VRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 463 ~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
..+++.+.. ..++.++++.++.+++.+.++
T Consensus 148 ~~~l~~~~~----~~~~~~~~~~~~~l~~~~~gl 177 (489)
T CHL00195 148 KKELTRLIK----SLNIKIDSELLENLTRACQGL 177 (489)
T ss_pred HHHHHHHHH----hcCCCCCHHHHHHHHHHhCCC
Confidence 999877664 346788999999888887765
No 132
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.38 E-value=1e-11 Score=135.43 Aligned_cols=191 Identities=25% Similarity=0.316 Sum_probs=121.3
Q ss_pred cccCHHHHHHHHHHHHc----------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh
Q 005179 292 VIGRETEIQRIIQILCR----------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (710)
Q Consensus 292 liGr~~~i~~l~~~L~~----------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~ 355 (710)
++|+++.++.+...+.. ....|+||+||||||||++|+++|..+ +.+++.+|++
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~ 142 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADAT 142 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecchh
Confidence 89999988877554421 124789999999999999999999887 5667777776
Q ss_pred hhhhccccCcc-HHHHHHHHHHH----HHhcCCeEEEEccchhhhhCCCCCC-CCCCChHhHHHhhcccccCC-------
Q 005179 356 LLMAGAKERGE-LEARVTTLISE----IQKSGDVILFIDEVHTLIGSGTVGR-GNKGTGLDISNLLKPSLGRG------- 422 (710)
Q Consensus 356 ~l~~g~~~~g~-~e~~l~~~~~~----~~~~~~~IL~IDEid~l~~~~~~~~-~~~~~~~~~~~~L~~~l~~~------- 422 (710)
.+.. ..+.|. .+..+..++.. +....+.||||||||.+...+.... +.+-++..+++.|+.+|+..
T Consensus 143 ~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 143 TLTE-AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred hccc-CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 5542 224443 33334444332 2345678999999999975421100 01112335677777766521
Q ss_pred --------CeEEEEccCh---------------------------------------HHHHh--------hhhccHHHHc
Q 005179 423 --------ELQCIASTTQ---------------------------------------DEHRT--------QFEKDKALAR 447 (710)
Q Consensus 423 --------~v~vI~att~---------------------------------------~~~~~--------~~~~d~aL~~ 447 (710)
+.++|.|+|. ..+.. .+.+.|.|..
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg 301 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG 301 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC
Confidence 1223333332 00000 1124688999
Q ss_pred ccc-ceEecCCCHHHHHHHHH----HHHHHHHh---hc--CCCCCHHHHHHHHHHh
Q 005179 448 RFQ-PVLISEPSQEDAVRILL----GLREKYEA---HH--NCKFTLEAINAAVHLS 493 (710)
Q Consensus 448 Rf~-~I~v~~Ps~~~~~~IL~----~l~~~~~~---~~--~~~i~~~~l~~l~~ls 493 (710)
|++ .+.+.+++.++...|+. .+.++|.. .+ .+.+++++++++++.+
T Consensus 302 Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 302 RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 997 78889999999999997 35554432 23 3578999999998864
No 133
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.37 E-value=7.6e-12 Score=127.06 Aligned_cols=171 Identities=14% Similarity=0.175 Sum_probs=107.9
Q ss_pred cCCCCcc-cCH-HHHHHHHHHHH-cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcccc
Q 005179 287 ELIDPVI-GRE-TEIQRIIQILC-RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (710)
Q Consensus 287 ~~l~~li-Gr~-~~i~~l~~~L~-~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~ 363 (710)
-+|++++ |.+ ..+..+.++.. ....++++|+||+|||||+|++++++..... +..++.+++..+...
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~~--- 84 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLLA--- 84 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHHH---
Confidence 4566666 333 33344444433 2345789999999999999999999987443 456667766543311
Q ss_pred CccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccH
Q 005179 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDK 443 (710)
Q Consensus 364 ~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~ 443 (710)
+.. .....+|+|||+|.+-. .....+...+...-+++..++|.+++... ....+.+
T Consensus 85 -----------~~~--~~~~~~liiDdi~~l~~---------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~--~~~~l~~ 140 (227)
T PRK08903 85 -----------FDF--DPEAELYAVDDVERLDD---------AQQIALFNLFNRVRAHGQGALLVAGPAAP--LALPLRE 140 (227)
T ss_pred -----------Hhh--cccCCEEEEeChhhcCc---------hHHHHHHHHHHHHHHcCCcEEEEeCCCCH--HhCCCCH
Confidence 011 12345899999998821 11223334443333455544555544332 1223568
Q ss_pred HHHccc---cceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 444 ALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 444 aL~~Rf---~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
.|.+|| ..|.+++|+.+++..++..+.. ..++.+++++++.++..+.+
T Consensus 141 ~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~----~~~v~l~~~al~~L~~~~~g 191 (227)
T PRK08903 141 DLRTRLGWGLVYELKPLSDADKIAALKAAAA----ERGLQLADEVPDYLLTHFRR 191 (227)
T ss_pred HHHHHHhcCeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhccC
Confidence 888888 3799999998888888776554 45799999999999876444
No 134
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.4e-12 Score=139.61 Aligned_cols=188 Identities=21% Similarity=0.307 Sum_probs=128.9
Q ss_pred CCcccCHHHHHHHHHHHHcCC------CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh----
Q 005179 290 DPVIGRETEIQRIIQILCRRT------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA---- 359 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~~~------~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~---- 359 (710)
++-+|.++..+++++.+.... +.-+.|+||||||||++++.||+.+ +..++.+.++.+..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEI 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhh
Confidence 467899999999999876532 2235789999999999999999999 77777776655532
Q ss_pred -ccc--cCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc----------------
Q 005179 360 -GAK--ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---------------- 420 (710)
Q Consensus 360 -g~~--~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---------------- 420 (710)
|.. |.|.+--++-+.++.+....| +++|||||.+- .|-.| |-...|+.+|.
T Consensus 481 kGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG-~g~qG--------DPasALLElLDPEQNanFlDHYLdVp~ 550 (906)
T KOG2004|consen 481 KGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG-SGHQG--------DPASALLELLDPEQNANFLDHYLDVPV 550 (906)
T ss_pred cccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC-CCCCC--------ChHHHHHHhcChhhccchhhhcccccc
Confidence 211 344444445555555555555 67789999993 22221 22333333332
Q ss_pred -CCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHH-HHHHHhhcC-----CCCCHHHHHHHHHHh
Q 005179 421 -RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGL-REKYEAHHN-----CKFTLEAINAAVHLS 493 (710)
Q Consensus 421 -~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l-~~~~~~~~~-----~~i~~~~l~~l~~ls 493 (710)
=.++.+|+|.|.-+ .+++.|++|+..|+++-+..++...|.+.. ..+....++ ++++++++..+++.-
T Consensus 551 DLSkVLFicTAN~id-----tIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y 625 (906)
T KOG2004|consen 551 DLSKVLFICTANVID-----TIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY 625 (906)
T ss_pred chhheEEEEeccccc-----cCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHH
Confidence 13688999988865 788999999999999999999999998863 344444444 578888887777654
Q ss_pred hhhhcCCCC
Q 005179 494 ARYISDRYL 502 (710)
Q Consensus 494 ~~~i~~r~~ 502 (710)
-|-.+-|.+
T Consensus 626 crEaGVRnL 634 (906)
T KOG2004|consen 626 CREAGVRNL 634 (906)
T ss_pred HHHHhHHHH
Confidence 444444443
No 135
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5.5e-12 Score=139.86 Aligned_cols=199 Identities=20% Similarity=0.274 Sum_probs=135.3
Q ss_pred CcccCHHHHHHHHHHHHcC-----CC-CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh-----
Q 005179 291 PVIGRETEIQRIIQILCRR-----TK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA----- 359 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~-----~~-~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~----- 359 (710)
+-.|-++..+++++.|... .+ .-++|+||||||||+|++.||+.+ +..++.+.++.+..
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhc
Confidence 5688898999999877542 22 335789999999999999999999 77777777655542
Q ss_pred ccc--cCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-----------------
Q 005179 360 GAK--ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----------------- 420 (710)
Q Consensus 360 g~~--~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----------------- 420 (710)
|.. |.|.+--++-+-+..+....| +++|||||.+...- .-|-+..|+..|.
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~---------rGDPaSALLEVLDPEQN~~F~DhYLev~yD 463 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF---------RGDPASALLEVLDPEQNNTFSDHYLEVPYD 463 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC---------CCChHHHHHhhcCHhhcCchhhccccCccc
Confidence 211 334443444444444444445 77889999994321 1122333333332
Q ss_pred CCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHH-HHHHHHhhcC-----CCCCHHHHHHHHHHhh
Q 005179 421 RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLG-LREKYEAHHN-----CKFTLEAINAAVHLSA 494 (710)
Q Consensus 421 ~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~-l~~~~~~~~~-----~~i~~~~l~~l~~ls~ 494 (710)
=.++.+|+|.|.-+ .++..|++|...|++.-++.++..+|-+. +..+....|+ +.++++++..+++.-.
T Consensus 464 LS~VmFiaTANsl~-----tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YT 538 (782)
T COG0466 464 LSKVMFIATANSLD-----TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYT 538 (782)
T ss_pred hhheEEEeecCccc-----cCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHh
Confidence 13688999998865 68999999999999999999999999886 3444444444 5799999999988766
Q ss_pred hhhcCCCCcchHHHHHHHHH
Q 005179 495 RYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 495 ~~i~~r~~p~~ai~ll~~a~ 514 (710)
|-.+-|.+-...-.+++.++
T Consensus 539 REAGVR~LeR~i~ki~RK~~ 558 (782)
T COG0466 539 REAGVRNLEREIAKICRKAA 558 (782)
T ss_pred HhhhhhHHHHHHHHHHHHHH
Confidence 66665655444444444443
No 136
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.36 E-value=3.2e-11 Score=119.87 Aligned_cols=166 Identities=22% Similarity=0.325 Sum_probs=117.4
Q ss_pred CCCCcccCHHHHHHHHH----HHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcccc
Q 005179 288 LIDPVIGRETEIQRIIQ----ILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~----~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~ 363 (710)
.+++++|.+.+.+.|++ .+.....+|+||+|++|||||++++++..++... +.++++++-..+..
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~-------GLRlIev~k~~L~~---- 93 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ-------GLRLIEVSKEDLGD---- 93 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc-------CceEEEECHHHhcc----
Confidence 45678999988887776 3455677999999999999999999999998553 67888887655541
Q ss_pred CccHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC------CCeEEEEccChHHH-
Q 005179 364 RGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------GELQCIASTTQDEH- 435 (710)
Q Consensus 364 ~g~~e~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------~~v~vI~att~~~~- 435 (710)
+..+++.+.. ..+.|||+||+- ++. ...-...|+.+|+. .++.+.+|+|.-..
T Consensus 94 -------l~~l~~~l~~~~~kFIlf~DDLs--Fe~----------~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 94 -------LPELLDLLRDRPYKFILFCDDLS--FEE----------GDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -------HHHHHHHHhcCCCCEEEEecCCC--CCC----------CcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 5556666653 357999999864 222 22235666766653 35777777765321
Q ss_pred ----Hhhh-----hc--------cHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 005179 436 ----RTQF-----EK--------DKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAIN 487 (710)
Q Consensus 436 ----~~~~-----~~--------d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~ 487 (710)
.... ++ .-+|..||. .|.|.+|+.++..+|+++++.++ ++.++++.+.
T Consensus 155 ~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~----g~~~~~e~l~ 220 (249)
T PF05673_consen 155 PESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY----GLELDEEELR 220 (249)
T ss_pred chhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc----CCCCCHHHHH
Confidence 1100 11 135777998 89999999999999999988754 7888865443
No 137
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.36 E-value=2.3e-11 Score=130.04 Aligned_cols=112 Identities=26% Similarity=0.325 Sum_probs=79.4
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC------------CCeEEEEccChHHHHhhhhccHHHHccc
Q 005179 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIASTTQDEHRTQFEKDKALARRF 449 (710)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------~~v~vI~att~~~~~~~~~~d~aL~~Rf 449 (710)
...|+||||||.++..+... +.+-.+.-++..|+++++. .++.+|++..-... +.-.+-|.|..||
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~-~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~ 326 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSS-GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS-KPSDLIPELQGRF 326 (443)
T ss_pred cCCEEEEEcchhhcccCCCC-CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCcc
Confidence 45699999999998664321 1122334478888888874 46677876542210 1114569999999
Q ss_pred c-ceEecCCCHHHHHHHHH----HHHHHHHhh-----cCCCCCHHHHHHHHHHhhh
Q 005179 450 Q-PVLISEPSQEDAVRILL----GLREKYEAH-----HNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 450 ~-~I~v~~Ps~~~~~~IL~----~l~~~~~~~-----~~~~i~~~~l~~l~~ls~~ 495 (710)
. .+.+.+++.++...||. .+.++|... ..+.+++++++.+++.+..
T Consensus 327 Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 327 PIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 7 78999999999999994 477776642 2357899999999998875
No 138
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.36 E-value=2.1e-11 Score=130.33 Aligned_cols=112 Identities=24% Similarity=0.309 Sum_probs=78.5
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC------------CCeEEEEccChHHHHhhhhccHHHHccc
Q 005179 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIASTTQDEHRTQFEKDKALARRF 449 (710)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------~~v~vI~att~~~~~~~~~~d~aL~~Rf 449 (710)
...|+||||||.++..+... +.+-.+.-++..|+++++. .++.+|++..-.... .-.+-|.|.-||
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~-~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~k-p~DlIPEl~GR~ 324 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESS-GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAK-PSDLIPELQGRF 324 (441)
T ss_pred cCCEEEEEchhhhcccCCCC-CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCC-hhhccHHHhCcc
Confidence 45699999999998664221 1112233478888888874 456777765422111 113569999999
Q ss_pred c-ceEecCCCHHHHHHHH----HHHHHHHHh---hcC--CCCCHHHHHHHHHHhhh
Q 005179 450 Q-PVLISEPSQEDAVRIL----LGLREKYEA---HHN--CKFTLEAINAAVHLSAR 495 (710)
Q Consensus 450 ~-~I~v~~Ps~~~~~~IL----~~l~~~~~~---~~~--~~i~~~~l~~l~~ls~~ 495 (710)
. .+.+.+++.++...|| ..+.++|.. ..+ +.+++++++.+++.+..
T Consensus 325 Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 325 PIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 7 7899999999999999 456666653 223 57899999999998764
No 139
>PRK09087 hypothetical protein; Validated
Probab=99.35 E-value=1.3e-11 Score=124.58 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=101.9
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccch
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVH 392 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid 392 (710)
.++|+||+|+|||||+++++... +.. .++...+. .+++..+. ..+|+|||++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~----------~~~--~i~~~~~~-------------~~~~~~~~---~~~l~iDDi~ 97 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS----------DAL--LIHPNEIG-------------SDAANAAA---EGPVLIEDID 97 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc----------CCE--EecHHHcc-------------hHHHHhhh---cCeEEEECCC
Confidence 48999999999999999988754 222 33322111 11222222 1378899999
Q ss_pred hhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccc---cceEecCCCHHHHHHHHHHH
Q 005179 393 TLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF---QPVLISEPSQEDAVRILLGL 469 (710)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf---~~I~v~~Ps~~~~~~IL~~l 469 (710)
.+. .....+.+++....+++..++|++++.+.+-. ...+.|++|| ..+.+.+|+.+++.+||+..
T Consensus 98 ~~~----------~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~--~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 98 AGG----------FDETGLFHLINSVRQAGTSLLMTSRLWPSSWN--VKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred CCC----------CCHHHHHHHHHHHHhCCCeEEEECCCChHHhc--cccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 872 11445777777777888888888877665221 2368899999 48999999999999999987
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q 005179 470 REKYEAHHNCKFTLEAINAAVHLSARYIS 498 (710)
Q Consensus 470 ~~~~~~~~~~~i~~~~l~~l~~ls~~~i~ 498 (710)
+.. .++.++++++++++..+.+-+.
T Consensus 166 ~~~----~~~~l~~ev~~~La~~~~r~~~ 190 (226)
T PRK09087 166 FAD----RQLYVDPHVVYYLVSRMERSLF 190 (226)
T ss_pred HHH----cCCCCCHHHHHHHHHHhhhhHH
Confidence 764 4789999999999998776443
No 140
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.5e-12 Score=127.88 Aligned_cols=152 Identities=22% Similarity=0.305 Sum_probs=105.0
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHH---hcCC--eEEEE
Q 005179 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ---KSGD--VILFI 388 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~---~~~~--~IL~I 388 (710)
+||+||||||||+|+++||+.+.= .....+....+++++..++. +++.++..+.+..+|+.+. +.++ +.++|
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSI-R~~~~y~~~~liEinshsLF--SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSI-RTNDRYYKGQLIEINSHSLF--SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhhee-eecCccccceEEEEehhHHH--HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 689999999999999999999832 22233445678899888887 4555555555555555543 3333 44669
Q ss_pred ccchhhhhCCCCCCCC--CCChHhHHHhhccccc----CCCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHH
Q 005179 389 DEVHTLIGSGTVGRGN--KGTGLDISNLLKPSLG----RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQED 461 (710)
Q Consensus 389 DEid~l~~~~~~~~~~--~~~~~~~~~~L~~~l~----~~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~ 461 (710)
||++.|..++...... ......+.|.|+..+. ..++.+.+|.|..+ .+|.+|.+|-+ ...|.+|+...
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----SIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----HHHHHhhhHhhheeecCCccHHH
Confidence 9999997654221111 1224556676665443 35566666666665 78999999998 78999999999
Q ss_pred HHHHHHHHHHHH
Q 005179 462 AVRILLGLREKY 473 (710)
Q Consensus 462 ~~~IL~~l~~~~ 473 (710)
+.+|++.-....
T Consensus 332 i~~IlkscieEL 343 (423)
T KOG0744|consen 332 IYEILKSCIEEL 343 (423)
T ss_pred HHHHHHHHHHHH
Confidence 999999866644
No 141
>PRK06620 hypothetical protein; Validated
Probab=99.33 E-value=1.2e-11 Score=123.90 Aligned_cols=135 Identities=11% Similarity=0.145 Sum_probs=98.1
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccc
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEi 391 (710)
++++|+||||+|||||++++++.. +.. .+. ... . . .... . ...+|+||||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~----------~~~--~~~--~~~----~-~------~~~~---~--~~d~lliDdi 94 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS----------NAY--IIK--DIF----F-N------EEIL---E--KYNAFIIEDI 94 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc----------CCE--Ecc--hhh----h-c------hhHH---h--cCCEEEEecc
Confidence 458999999999999999987754 211 111 000 0 0 0111 1 2358999999
Q ss_pred hhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHcccc---ceEecCCCHHHHHHHHHH
Q 005179 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ---PVLISEPSQEDAVRILLG 468 (710)
Q Consensus 392 d~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~---~I~v~~Ps~~~~~~IL~~ 468 (710)
|.+. ...+.+++..+.++|..++|++++.+. .+.+ ++|++||. .+.+.+|+.+++..+++.
T Consensus 95 ~~~~------------~~~lf~l~N~~~e~g~~ilits~~~p~---~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k 158 (214)
T PRK06620 95 ENWQ------------EPALLHIFNIINEKQKYLLLTSSDKSR---NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFK 158 (214)
T ss_pred ccch------------HHHHHHHHHHHHhcCCEEEEEcCCCcc---ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHH
Confidence 9651 235666777777888888888888776 3346 89999997 899999999999888887
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 469 LREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 469 l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
.+.. .++.++++++++++..+.+-
T Consensus 159 ~~~~----~~l~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 159 HFSI----SSVTISRQIIDFLLVNLPRE 182 (214)
T ss_pred HHHH----cCCCCCHHHHHHHHHHccCC
Confidence 6653 47899999999999887654
No 142
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=2.7e-11 Score=129.86 Aligned_cols=200 Identities=16% Similarity=0.145 Sum_probs=129.5
Q ss_pred hhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcC----CCcccc----Cce------
Q 005179 284 ASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAE----VPVFLL----SKR------ 348 (710)
Q Consensus 284 ~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~----~p~~l~----~~~------ 348 (710)
..|..++.++|+++.+..+...+...+..| +||+||+|+|||++|+.+|+.+.+.. .|.... .+.
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 467778899999999999999988776555 88999999999999999999987632 121110 010
Q ss_pred ------EEEeehhhhhhccc-cCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcc
Q 005179 349 ------IMSLDMGLLMAGAK-ERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (710)
Q Consensus 349 ------v~~ld~~~l~~g~~-~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (710)
++.+....-..+.+ ...-..+.++.+.+.+. ..+..|++|||+|.| +...+|.|+.
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-------------~~~aanaLLk 163 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-------------NRNAANAILK 163 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-------------CHHHHHHHHH
Confidence 11111000000000 00001223444444433 234579999999999 4556777877
Q ss_pred cccCC--CeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 418 SLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 418 ~l~~~--~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
.+++. +..+|..++... .+.+.+++||..+.+++|+.++...+|..... ...++++++..++.++.+
T Consensus 164 ~LEEpp~~~~fiLit~~~~-----~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~------~~~~~~~~~~~i~~~s~G 232 (351)
T PRK09112 164 TLEEPPARALFILISHSSG-----RLLPTIRSRCQPISLKPLDDDELKKALSHLGS------SQGSDGEITEALLQRSKG 232 (351)
T ss_pred HHhcCCCCceEEEEECChh-----hccHHHHhhccEEEecCCCHHHHHHHHHHhhc------ccCCCHHHHHHHHHHcCC
Confidence 77753 344444444443 45699999999999999999999888886321 122678888888777654
Q ss_pred hhcCCCCcchHHHHHHHH
Q 005179 496 YISDRYLPDKAIDLVDEA 513 (710)
Q Consensus 496 ~i~~r~~p~~ai~ll~~a 513 (710)
.|..++.++...
T Consensus 233 ------~pr~Al~ll~~~ 244 (351)
T PRK09112 233 ------SVRKALLLLNYG 244 (351)
T ss_pred ------CHHHHHHHHhcC
Confidence 466777776543
No 143
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.32 E-value=2.9e-11 Score=128.22 Aligned_cols=160 Identities=23% Similarity=0.314 Sum_probs=97.8
Q ss_pred CCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccc-------cC--------------
Q 005179 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL-------LS-------------- 346 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l-------~~-------------- 346 (710)
.|..++|+++.++.+.-.+......|+||+|+||+|||+++++++..+......... .+
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIE 85 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccc
Confidence 466799999988877754433345789999999999999999999987421100000 00
Q ss_pred --ceEEEeehh----hhhhcccc------CccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHh
Q 005179 347 --KRIMSLDMG----LLMAGAKE------RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414 (710)
Q Consensus 347 --~~v~~ld~~----~l~~g~~~------~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~ 414 (710)
.++..+... .++ |.-+ .|++..+ .. .+....+.+|||||++.+ ....++.
T Consensus 86 ~~~p~~~~p~~~t~~~l~-G~~d~~~~l~~g~~~~~-~G---~l~~A~~GiL~lDEInrl-------------~~~~q~~ 147 (334)
T PRK13407 86 RPTPVVDLPLGVTEDRVV-GALDIERALTRGEKAFE-PG---LLARANRGYLYIDEVNLL-------------EDHIVDL 147 (334)
T ss_pred cCCccccCCCCCCcceee-cchhhhhhhhcCCeeec-CC---ceEEcCCCeEEecChHhC-------------CHHHHHH
Confidence 000000000 000 1000 0111000 00 111233568999999999 4556777
Q ss_pred hcccccCC---------------CeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCH-HHHHHHHHHH
Q 005179 415 LKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ-EDAVRILLGL 469 (710)
Q Consensus 415 L~~~l~~~---------------~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~-~~~~~IL~~l 469 (710)
|...|+.+ .+++|+++|+.+ ..+.+++..||. .|.+++|.. +++.+|+...
T Consensus 148 Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e----~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 148 LLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEE----GELRPQLLDRFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred HHHHHHcCCeEEEECCeEEecCCCEEEEecCCccc----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHh
Confidence 77666544 367788888754 247899999997 788888865 8888888763
No 144
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.31 E-value=1.7e-11 Score=144.04 Aligned_cols=176 Identities=16% Similarity=0.235 Sum_probs=116.2
Q ss_pred CcccCHHHHHHHHHHHHc------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh-----h
Q 005179 291 PVIGRETEIQRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-----A 359 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~-----~ 359 (710)
+.+|.++..+++++.+.. ..+..++|+||||+|||++++.++..+ +..++.++++... .
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCHHHhc
Confidence 489999999998876653 234568999999999999999999987 4445545433321 1
Q ss_pred cc--ccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC----------------
Q 005179 360 GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---------------- 421 (710)
Q Consensus 360 g~--~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~---------------- 421 (710)
|. .+.|....++...+..+... +.|++|||+|.+.... ..+..+.|.++++.
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~~-~~villDEidk~~~~~---------~g~~~~aLlevld~~~~~~~~d~~~~~~~d 462 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGVK-NPLFLLDEIDKMSSDM---------RGDPASALLEVLDPEQNVAFSDHYLEVDYD 462 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCCC-CCEEEEEChhhccccc---------CCCHHHHHHHHhccccEEEEeccccccccc
Confidence 11 12222222222223322222 3488999999994321 11233444444432
Q ss_pred -CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHH-HHHhh-----cCCCCCHHHHHHHHHH
Q 005179 422 -GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLRE-KYEAH-----HNCKFTLEAINAAVHL 492 (710)
Q Consensus 422 -~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~-~~~~~-----~~~~i~~~~l~~l~~l 492 (710)
+++.+|+|+|.. .++++|++||..|.+..++.++..+|.+..+. +.... ..+.++++++..+++.
T Consensus 463 ls~v~~i~TaN~~------~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~ 534 (784)
T PRK10787 463 LSDVMFVATSNSM------NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRY 534 (784)
T ss_pred CCceEEEEcCCCC------CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHh
Confidence 578888877652 58999999999999999999999999987653 22222 2367999999999863
No 145
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.1e-10 Score=125.53 Aligned_cols=208 Identities=22% Similarity=0.264 Sum_probs=142.0
Q ss_pred CcccCHHHHHHHHHHHHc----CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh--------
Q 005179 291 PVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------- 358 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~----~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~-------- 358 (710)
.+.+|+++++++...|.. ..+.|++++|+||||||++++.+++++..... +..++++++....
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-----~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-----NVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-----cCceEEEeeeeCCCHHHHHHH
Confidence 378999999999887643 56678999999999999999999999855321 1114444432221
Q ss_pred --h---ccccCc-cHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc--CCCeEEEEc
Q 005179 359 --A---GAKERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIAS 429 (710)
Q Consensus 359 --~---g~~~~g-~~e~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~a 429 (710)
. .....| ...+.++.+.+.+.. ....|+++||+|.|+... +..+.++++ ... ..++.+|+.
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~---------~~~LY~L~r-~~~~~~~~v~vi~i 162 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD---------GEVLYSLLR-APGENKVKVSIIAV 162 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc---------chHHHHHHh-hccccceeEEEEEE
Confidence 1 111222 223334555555544 457889999999996541 122333332 222 345678888
Q ss_pred cChHHHHhhhhccHHHHcccc--ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHH
Q 005179 430 TTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~Rf~--~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai 507 (710)
+|...+.. .+++.+.++|. .|.|++++.+|...||....+.. ...-.+++++++.++..+...-+ -..+++
T Consensus 163 ~n~~~~~~--~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--~~~~~~~~~vl~lia~~~a~~~G---DAR~ai 235 (366)
T COG1474 163 SNDDKFLD--YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--FSAGVIDDDVLKLIAALVAAESG---DARKAI 235 (366)
T ss_pred eccHHHHH--HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCcCccHHHHHHHHHHHcCc---cHHHHH
Confidence 88876633 57899999996 68999999999999999876643 34567899999988887776544 346899
Q ss_pred HHHHHHHhhhhhh
Q 005179 508 DLVDEAGSRAHIE 520 (710)
Q Consensus 508 ~ll~~a~~~~~~~ 520 (710)
++++.|+..+...
T Consensus 236 dilr~A~eiAe~~ 248 (366)
T COG1474 236 DILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998766543
No 146
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.29 E-value=8.7e-11 Score=124.75 Aligned_cols=165 Identities=22% Similarity=0.273 Sum_probs=102.0
Q ss_pred CCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCC----ccc--cCceEEEeehhhhhhcc
Q 005179 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVP----VFL--LSKRIMSLDMGLLMAGA 361 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p----~~l--~~~~v~~ld~~~l~~g~ 361 (710)
-|..++|+++....|...+..+..+++||.|++|||||++++++++.+...++. ... .+...+.-++.....+.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~ 94 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNG 94 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhccc
Confidence 366899999988888877777777899999999999999999999887653321 100 00000000000000000
Q ss_pred ----------c----cCccHHHHH------HHHHH---------HHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHH
Q 005179 362 ----------K----ERGELEARV------TTLIS---------EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDIS 412 (710)
Q Consensus 362 ----------~----~~g~~e~~l------~~~~~---------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~ 412 (710)
+ ..+-.+.++ ...+. .+....+.+|||||++.+ ....+
T Consensus 95 ~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL-------------~~~~Q 161 (350)
T CHL00081 95 ETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL-------------DDHLV 161 (350)
T ss_pred ccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-------------CHHHH
Confidence 0 001111111 11111 011334679999999999 44566
Q ss_pred HhhcccccCC---------------CeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCC-HHHHHHHHHHH
Q 005179 413 NLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPS-QEDAVRILLGL 469 (710)
Q Consensus 413 ~~L~~~l~~~---------------~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps-~~~~~~IL~~l 469 (710)
+.|...|+.+ .+++|++.++.+ -.+.++|..||. .|.+..|+ .+++.+|++..
T Consensus 162 ~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e----g~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 162 DILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred HHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc----CCCCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 6666655432 456777777654 247899999998 78999997 68999998864
No 147
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.28 E-value=7.5e-11 Score=125.36 Aligned_cols=163 Identities=21% Similarity=0.283 Sum_probs=98.4
Q ss_pred CCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhc----CCCcc---------ccCceEE-----
Q 005179 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA----EVPVF---------LLSKRIM----- 350 (710)
Q Consensus 289 l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~----~~p~~---------l~~~~v~----- 350 (710)
|..++|+++.+..++-.+-.+...+++|.|++|+|||+++++++..+... ..|.. ..+++..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 56789999999887766666667889999999999999999999876321 00100 0001110
Q ss_pred ----------EeehhhhhhccccCcc--HHHHHHH---HH--HHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHH
Q 005179 351 ----------SLDMGLLMAGAKERGE--LEARVTT---LI--SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (710)
Q Consensus 351 ----------~ld~~~l~~g~~~~g~--~e~~l~~---~~--~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~ 413 (710)
..|+..=.......|. ++..+.. .+ ..+.+..+.+|||||++.+ ....++
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L-------------~~~~Q~ 149 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL-------------EDHLVD 149 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC-------------CHHHHH
Confidence 0111100000001111 1111100 00 0112244579999999998 445666
Q ss_pred hhcccccCC---------------CeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCH-HHHHHHHHH
Q 005179 414 LLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ-EDAVRILLG 468 (710)
Q Consensus 414 ~L~~~l~~~---------------~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~-~~~~~IL~~ 468 (710)
.|...|+++ .+++|+++++.+ -.+.++|..||. .+.+..|.. +++.+|++.
T Consensus 150 ~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e----g~l~~~LldRf~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 150 VLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred HHHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc----CCCCHHHHhhcceEEECCCCCCHHHHHHHHHh
Confidence 666666543 356777777653 247899999998 788888875 888888876
No 148
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.27 E-value=1.9e-10 Score=125.48 Aligned_cols=152 Identities=18% Similarity=0.265 Sum_probs=90.2
Q ss_pred CcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcc------ccC
Q 005179 291 PVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA------KER 364 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~------~~~ 364 (710)
.++|+++.++.+...+. .+.|+||+||||||||++|++|+..+.... |.....+.+. ...+++ |. +..
T Consensus 21 ~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ft--tp~DLf-G~l~i~~~~~~ 94 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFS--TPEEVF-GPLSIQALKDE 94 (498)
T ss_pred hccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeec--CcHHhc-CcHHHhhhhhc
Confidence 48999999999988775 468899999999999999999999874322 2221111110 112222 11 112
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCC-----------e-EEEEccCh
Q 005179 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-----------L-QCIASTTQ 432 (710)
Q Consensus 365 g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-----------v-~vI~att~ 432 (710)
|.+.......+ .. ..+||+|||+.+ +...++.|...|+.+. . .++++||+
T Consensus 95 g~f~r~~~G~L---~~--A~lLfLDEI~ra-------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 95 GRYQRLTSGYL---PE--AEIVFLDEIWKA-------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred CchhhhcCCcc---cc--ccEEeecccccC-------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 22221111111 01 228999999877 5567777777775322 2 23444453
Q ss_pred HHHHhhhhccHHHHcccc-ceEecCCC-HHHHHHHHHH
Q 005179 433 DEHRTQFEKDKALARRFQ-PVLISEPS-QEDAVRILLG 468 (710)
Q Consensus 433 ~~~~~~~~~d~aL~~Rf~-~I~v~~Ps-~~~~~~IL~~ 468 (710)
.+ ..-...+++..||. .|.+++|+ .++-.+||..
T Consensus 157 LP--E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 157 LP--EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred Cc--ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 22 11123358999996 68888886 4555777764
No 149
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=5.1e-11 Score=128.38 Aligned_cols=196 Identities=15% Similarity=0.172 Sum_probs=126.4
Q ss_pred hhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCc-c--------cc--------
Q 005179 284 ASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV-F--------LL-------- 345 (710)
Q Consensus 284 ~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~-~--------l~-------- 345 (710)
.+|.++++++|++..++.+.+.+.+.+..| +||+||+|+||+++|..+|+.+.+..... . +.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 477888999999999999999988876666 78999999999999999999997643110 0 00
Q ss_pred -------CceEEEeehhhhhhccccCcc-HHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHH
Q 005179 346 -------SKRIMSLDMGLLMAGAKERGE-LEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (710)
Q Consensus 346 -------~~~v~~ld~~~l~~g~~~~g~-~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~ 413 (710)
.-.++.+....-..+.+.... ..+.++.+.+.+. ..++.|++|||+|.+ +...+|
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------------~~~aan 159 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------------NANAAN 159 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------------CHHHHH
Confidence 001111111000000000011 1233555555443 245779999999999 556788
Q ss_pred hhcccccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005179 414 LLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (710)
Q Consensus 414 ~L~~~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ 491 (710)
.|+..+++ +..++|.+|+... .+.+.+++|++.|.+.+|+.++..++|... .....++.+..++.
T Consensus 160 aLLK~LEepp~~~~~IL~t~~~~-----~llpti~SRc~~i~l~~l~~~~i~~~L~~~--------~~~~~~~~~~~l~~ 226 (365)
T PRK07471 160 ALLKVLEEPPARSLFLLVSHAPA-----RLLPTIRSRCRKLRLRPLAPEDVIDALAAA--------GPDLPDDPRAALAA 226 (365)
T ss_pred HHHHHHhcCCCCeEEEEEECCch-----hchHHhhccceEEECCCCCHHHHHHHHHHh--------cccCCHHHHHHHHH
Confidence 88888886 3455565555544 456899999999999999999988777642 12334444455565
Q ss_pred HhhhhhcCCCCcchHHHHHH
Q 005179 492 LSARYISDRYLPDKAIDLVD 511 (710)
Q Consensus 492 ls~~~i~~r~~p~~ai~ll~ 511 (710)
++.+ .|..++.+++
T Consensus 227 ~s~G------sp~~Al~ll~ 240 (365)
T PRK07471 227 LAEG------SVGRALRLAG 240 (365)
T ss_pred HcCC------CHHHHHHHhc
Confidence 6543 2445555543
No 150
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.3e-10 Score=123.44 Aligned_cols=136 Identities=18% Similarity=0.250 Sum_probs=93.5
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEE
Q 005179 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILF 387 (710)
Q Consensus 308 ~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~ 387 (710)
+..+++-|||||||||||+++.|+|+.+ ++.|+-++++.... ..+ ++.++... ...+||+
T Consensus 232 kawKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIydLeLt~v~~------n~d--Lr~LL~~t--~~kSIiv 291 (457)
T KOG0743|consen 232 KAWKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYDLELTEVKL------DSD--LRHLLLAT--PNKSILL 291 (457)
T ss_pred cchhccceeeCCCCCCHHHHHHHHHhhc----------CCceEEeeeccccC------cHH--HHHHHHhC--CCCcEEE
Confidence 3567899999999999999999999999 89999988765432 122 66666543 3468999
Q ss_pred EccchhhhhCCCCCCCC---CC---ChHhH---HHhhcccccC--CCeEEEEccChHHHHhhhhccHHHHc--ccc-ceE
Q 005179 388 IDEVHTLIGSGTVGRGN---KG---TGLDI---SNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVL 453 (710)
Q Consensus 388 IDEid~l~~~~~~~~~~---~~---~~~~~---~~~L~~~l~~--~~v~vI~att~~~~~~~~~~d~aL~~--Rf~-~I~ 453 (710)
|+|||.-+......... .. ....+ .|.+--+-+. +.-++|.|||..+ .+||+|.| |.+ .|.
T Consensus 292 IEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E-----kLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 292 IEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE-----KLDPALLRPGRMDMHIY 366 (457)
T ss_pred EeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh-----hcCHhhcCCCcceeEEE
Confidence 99999876432111100 01 11222 2222222222 3667888999988 89999999 887 899
Q ss_pred ecCCCHHHHHHHHHH
Q 005179 454 ISEPSQEDAVRILLG 468 (710)
Q Consensus 454 v~~Ps~~~~~~IL~~ 468 (710)
+...+.++...++..
T Consensus 367 mgyCtf~~fK~La~n 381 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASN 381 (457)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999985555443
No 151
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=8.1e-11 Score=133.98 Aligned_cols=222 Identities=11% Similarity=0.081 Sum_probs=137.2
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCC-----CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccc--cCceEE
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTK-----NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL--LSKRIM 350 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~-----~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l--~~~~v~ 350 (710)
.+|.++++|..+++++|+++.+..+..++..... +-++|+||||+|||++++.++..+... +-... .++...
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~-~~Ew~npv~~~~~ 150 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQ-VQEWSNPTLPDFQ 150 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH-HHHHhhhhhhccc
Confidence 4799999999999999999999999888765322 228999999999999999999876321 00000 000000
Q ss_pred E---eehhhhhhccccCccHHHHHHHHHHHHH----------hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhc-
Q 005179 351 S---LDMGLLMAGAKERGELEARVTTLISEIQ----------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK- 416 (710)
Q Consensus 351 ~---ld~~~l~~g~~~~g~~e~~l~~~~~~~~----------~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~- 416 (710)
. .....+.........-.+.++.++..+. .....||||||++.++.. ....+.++|.
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r---------~~~~lq~lLr~ 221 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR---------DTRALHEILRW 221 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh---------hHHHHHHHHHH
Confidence 0 0000000000000111223444444443 124679999999887532 1234566666
Q ss_pred ccccCCCeEEEEccChHHH------Hhhhh----ccHHHHc--cccceEecCCCHHHHHHHHHHHHHHHHhh--cCCCC-
Q 005179 417 PSLGRGELQCIASTTQDEH------RTQFE----KDKALAR--RFQPVLISEPSQEDAVRILLGLREKYEAH--HNCKF- 481 (710)
Q Consensus 417 ~~l~~~~v~vI~att~~~~------~~~~~----~d~aL~~--Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~--~~~~i- 481 (710)
.+.+.+.+.+|+++|...+ ...+. +.+++.+ |...|.|.+.+..+..+.|+.++...... ....+
T Consensus 222 ~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p 301 (637)
T TIGR00602 222 KYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVP 301 (637)
T ss_pred HhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccC
Confidence 5667777777777664322 11122 3478876 55689999999999999999888754221 12223
Q ss_pred CHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHh
Q 005179 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 482 ~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~ 515 (710)
+++++..++..+.+-+ +.||..|..+|.
T Consensus 302 ~~~~l~~I~~~s~GDi------RsAIn~LQf~~~ 329 (637)
T TIGR00602 302 KKTSVELLCQGCSGDI------RSAINSLQFSSS 329 (637)
T ss_pred CHHHHHHHHHhCCChH------HHHHHHHHHHHh
Confidence 5678888887655543 468888888764
No 152
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.25 E-value=7.5e-11 Score=116.93 Aligned_cols=193 Identities=16% Similarity=0.209 Sum_probs=141.8
Q ss_pred hHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceE--------EE
Q 005179 280 LTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI--------MS 351 (710)
Q Consensus 280 l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v--------~~ 351 (710)
|.+++||..++.++++++.-..+........-.|+++|||+|.||-|.+.++.+++....++..-..... ++
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklE 82 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLE 82 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEE
Confidence 5678899999999999988888888777666799999999999999999999999866444322111111 11
Q ss_pred e---------ehhhhhhccccCccHHHHHHHHHHHHHhc---------CCeEEEEccchhhhhCCCCCCCCCCChHhHHH
Q 005179 352 L---------DMGLLMAGAKERGELEARVTTLISEIQKS---------GDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (710)
Q Consensus 352 l---------d~~~l~~g~~~~g~~e~~l~~~~~~~~~~---------~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~ 413 (710)
+ .++.--.|..++- .+.++++++.+. .-.|++|.|+|.| ..|++.
T Consensus 83 istvsS~yHlEitPSDaG~~DRv----ViQellKevAQt~qie~~~qr~fKvvvi~ead~L-------------T~dAQ~ 145 (351)
T KOG2035|consen 83 ISTVSSNYHLEITPSDAGNYDRV----VIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-------------TRDAQH 145 (351)
T ss_pred EEEecccceEEeChhhcCcccHH----HHHHHHHHHHhhcchhhccccceEEEEEechHhh-------------hHHHHH
Confidence 1 1111112222222 234455544331 2358899999999 778999
Q ss_pred hhccccc--CCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005179 414 LLKPSLG--RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (710)
Q Consensus 414 ~L~~~l~--~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ 491 (710)
.|+..|+ .+..++|..+|.-. .+-+.+++|+-.|.++.|+.++...+|..++.+. ++.++.+.+..+++
T Consensus 146 aLRRTMEkYs~~~RlIl~cns~S-----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE----~l~lp~~~l~rIa~ 216 (351)
T KOG2035|consen 146 ALRRTMEKYSSNCRLILVCNSTS-----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKE----GLQLPKELLKRIAE 216 (351)
T ss_pred HHHHHHHHHhcCceEEEEecCcc-----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHh----cccCcHHHHHHHHH
Confidence 9998888 46777777777654 5668999999999999999999999999888754 78899999999999
Q ss_pred Hhhhhhc
Q 005179 492 LSARYIS 498 (710)
Q Consensus 492 ls~~~i~ 498 (710)
.+.|.+.
T Consensus 217 kS~~nLR 223 (351)
T KOG2035|consen 217 KSNRNLR 223 (351)
T ss_pred HhcccHH
Confidence 9887543
No 153
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.25 E-value=1.4e-10 Score=125.89 Aligned_cols=191 Identities=23% Similarity=0.298 Sum_probs=119.3
Q ss_pred cccCHHHHHHHHHHHH----c-------C-------CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 292 VIGRETEIQRIIQILC----R-------R-------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 292 liGr~~~i~~l~~~L~----~-------~-------~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
+||+++.++.+...+. + . .+.++||+||||||||++|+++|..+ +.++..++
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~d 148 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIAD 148 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEec
Confidence 7999998888766552 1 0 13579999999999999999999877 44555566
Q ss_pred hhhhhhccccCcc-HHHHHHHHHHH----HHhcCCeEEEEccchhhhhCCCCCCC-CCCChHhHHHhhcccccC------
Q 005179 354 MGLLMAGAKERGE-LEARVTTLISE----IQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLGR------ 421 (710)
Q Consensus 354 ~~~l~~g~~~~g~-~e~~l~~~~~~----~~~~~~~IL~IDEid~l~~~~~~~~~-~~~~~~~~~~~L~~~l~~------ 421 (710)
...+.. ..+.|. .+..+..++.. +....+.||||||+|.+......... .+-.+..+++.|++.|+.
T Consensus 149 a~~L~~-~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 149 ATTLTE-AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred hhhccc-cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecc
Confidence 555432 224443 33444444332 23345679999999999753211000 011123567777666631
Q ss_pred ---------CCeEEEEccChH-------------------------------------HHH------h--hhhccHHHHc
Q 005179 422 ---------GELQCIASTTQD-------------------------------------EHR------T--QFEKDKALAR 447 (710)
Q Consensus 422 ---------~~v~vI~att~~-------------------------------------~~~------~--~~~~d~aL~~ 447 (710)
.+.++|.|+|.- ++. . .+.+.|.|..
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg 307 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG 307 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC
Confidence 123345444430 000 0 1124588999
Q ss_pred ccc-ceEecCCCHHHHHHHHHH----HHHHHHhh-----cCCCCCHHHHHHHHHHh
Q 005179 448 RFQ-PVLISEPSQEDAVRILLG----LREKYEAH-----HNCKFTLEAINAAVHLS 493 (710)
Q Consensus 448 Rf~-~I~v~~Ps~~~~~~IL~~----l~~~~~~~-----~~~~i~~~~l~~l~~ls 493 (710)
|++ .+.+.+.+.+++.+|+.. +.++|... ..+.+++++++++++.+
T Consensus 308 Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 308 RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 997 677889999999999986 45555432 23578999999998874
No 154
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.24 E-value=1.9e-10 Score=136.69 Aligned_cols=182 Identities=16% Similarity=0.207 Sum_probs=124.3
Q ss_pred CcccCHHHHHHHHHHHHcC--------CC-CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhc-
Q 005179 291 PVIGRETEIQRIIQILCRR--------TK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG- 360 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~--------~~-~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g- 360 (710)
.++|+++.+..+.+.+.+. .+ ..+||+||+|||||.+|++||+.+..+ ...++.+|++.+...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~-------~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG-------EQNLITINMSEFQEAH 639 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC-------CcceEEEeHHHhhhhh
Confidence 5999999999998877541 11 237999999999999999999998433 346777887766421
Q ss_pred -------c--ccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC---------
Q 005179 361 -------A--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (710)
Q Consensus 361 -------~--~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--------- 422 (710)
. .+.|.-+. ..+.+.++..+.+||+||||+.+ ..++.+.|.+++..|
T Consensus 640 ~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-------------~~~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-------------HPDVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred hhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-------------CHHHHHHHHHHhhcceeecCCCcE
Confidence 1 12221110 11234445567789999999977 556778887777643
Q ss_pred ----CeEEEEccChHH--HHh----------------h------hhccHHHHccccceEecCCCHHHHHHHHHHHHHHHH
Q 005179 423 ----ELQCIASTTQDE--HRT----------------Q------FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE 474 (710)
Q Consensus 423 ----~v~vI~att~~~--~~~----------------~------~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~ 474 (710)
+.++|.|+|... |.. . ....|.|.+|++.|.|.+++.++..+|+...+....
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~ 784 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIA 784 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 355777766311 000 0 114588899999999999999999999987655432
Q ss_pred ----hh--cCCCCCHHHHHHHHHHhh
Q 005179 475 ----AH--HNCKFTLEAINAAVHLSA 494 (710)
Q Consensus 475 ----~~--~~~~i~~~~l~~l~~ls~ 494 (710)
.. ..+.++++++++++..+.
T Consensus 785 ~rl~~~~gi~l~i~d~a~~~La~~g~ 810 (852)
T TIGR03345 785 RRLKENHGAELVYSEALVEHIVARCT 810 (852)
T ss_pred HHHHHhcCceEEECHHHHHHHHHHcC
Confidence 22 235789999999887753
No 155
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.24 E-value=7.6e-11 Score=123.18 Aligned_cols=172 Identities=14% Similarity=0.166 Sum_probs=108.0
Q ss_pred ccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHH----
Q 005179 293 IGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE---- 368 (710)
Q Consensus 293 iGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e---- 368 (710)
+-..+..+.++..+.. +++++|.|+||||||++++.+|..+ +.+++.+++..........|...
T Consensus 48 ~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~l~ 115 (327)
T TIGR01650 48 LFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIVLK 115 (327)
T ss_pred cCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceeecc
Confidence 3344455556655543 5689999999999999999999999 55565555433322111111100
Q ss_pred -----HH-HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc----------------CCCeEE
Q 005179 369 -----AR-VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----------------RGELQC 426 (710)
Q Consensus 369 -----~~-l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----------------~~~v~v 426 (710)
.. ....+-.+.. .+.+|++||++.. ..++++.|..+|+ ...+++
T Consensus 116 ~g~~~~~f~~GpL~~A~~-~g~illlDEin~a-------------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~Frv 181 (327)
T TIGR01650 116 DGKQITEFRDGILPWALQ-HNVALCFDEYDAG-------------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRL 181 (327)
T ss_pred CCcceeEEecCcchhHHh-CCeEEEechhhcc-------------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEE
Confidence 00 1112222222 3678999999988 3334444333333 135779
Q ss_pred EEccChHH-------HHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhh
Q 005179 427 IASTTQDE-------HRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (710)
Q Consensus 427 I~att~~~-------~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~ 494 (710)
|+|+|+.+ |.....++.++.+||. .+.++.|+.++-.+|+......+ .-..+++.++++++++.
T Consensus 182 iAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~----~~~~~~~i~~~mV~la~ 253 (327)
T TIGR01650 182 FATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGF----DDTEGKDIINAMVRVAD 253 (327)
T ss_pred EEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCC----CccchHHHHHHHHHHHH
Confidence 99999866 7788889999999997 56899999999999987653211 11123456666665543
No 156
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.21 E-value=4.6e-10 Score=115.21 Aligned_cols=211 Identities=20% Similarity=0.225 Sum_probs=132.0
Q ss_pred cccCH---HHHHHHHHHHHcC---CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh-----------
Q 005179 292 VIGRE---TEIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM----------- 354 (710)
Q Consensus 292 liGr~---~~i~~l~~~L~~~---~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~----------- 354 (710)
.||.. ..++++.+++..+ +..|++|+|++|.|||++++.+.+......-+. ....+|+.+.+
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-AERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-CccccEEEEecCCCCChHHHHH
Confidence 45544 3445555656543 347899999999999999999887543221111 11235555542
Q ss_pred ---hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccC
Q 005179 355 ---GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431 (710)
Q Consensus 355 ---~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att 431 (710)
..+....+........-..++..++..+.-+|+|||+|.++.... ....++.|.|+.+-..-++.+|+..+
T Consensus 115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 115 AILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------RKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred HHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------HHHHHHHHHHHHHhhccCCCeEEecc
Confidence 222222222333333333344555566677999999999753311 23667889998887777888888888
Q ss_pred hHHHHhhhhccHHHHccccceEecCCCH-HHHHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHhhhhhcCCCCcchHHHH
Q 005179 432 QDEHRTQFEKDKALARRFQPVLISEPSQ-EDAVRILLGLREKYEAHHNCKF-TLEAINAAVHLSARYISDRYLPDKAIDL 509 (710)
Q Consensus 432 ~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~-~~~~~IL~~l~~~~~~~~~~~i-~~~~l~~l~~ls~~~i~~r~~p~~ai~l 509 (710)
.+-+. .+..|+.+.+||..+.++.... ++...+|..+...+.....-.+ +++....+...+.+.++ +...+
T Consensus 189 ~~A~~-al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG------~l~~l 261 (302)
T PF05621_consen 189 REAYR-ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG------ELSRL 261 (302)
T ss_pred HHHHH-HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH------HHHHH
Confidence 87765 5678999999999999988764 3444444444443333333333 45666888888877655 46677
Q ss_pred HHHHHhh
Q 005179 510 VDEAGSR 516 (710)
Q Consensus 510 l~~a~~~ 516 (710)
+..|+..
T Consensus 262 l~~aA~~ 268 (302)
T PF05621_consen 262 LNAAAIA 268 (302)
T ss_pred HHHHHHH
Confidence 7776643
No 157
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.20 E-value=4.6e-10 Score=131.20 Aligned_cols=146 Identities=18% Similarity=0.314 Sum_probs=96.4
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh-----hcc----ccCccHHH
Q 005179 299 IQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-----AGA----KERGELEA 369 (710)
Q Consensus 299 i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~-----~g~----~~~g~~e~ 369 (710)
+.+++..+.. ..+++|-|.||+|||+|+.+||+.. |..++.++++.-. .|. ...|+|..
T Consensus 1533 l~rVlRAmqv--~kpilLEGsPGVGKTSlItaLAr~t----------G~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w 1600 (4600)
T COG5271 1533 LRRVLRAMQV--GKPILLEGSPGVGKTSLITALARKT----------GKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRW 1600 (4600)
T ss_pred HHHHHHHHhc--CCceeecCCCCccHHHHHHHHHHHh----------cCceEEeeccccchHHHHhCCCCCcccCceeEe
Confidence 3455555544 4679999999999999999999988 6777777654432 121 23355554
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc----------------CCCeEEEEccChH
Q 005179 370 RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----------------RGELQCIASTTQD 433 (710)
Q Consensus 370 ~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----------------~~~v~vI~att~~ 433 (710)
+=..++..++. +.++++||+.... ..+..-|...|. ..+++|.++-|+.
T Consensus 1601 ~dapfL~amr~--G~WVlLDEiNLaS-------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq 1665 (4600)
T COG5271 1601 MDAPFLHAMRD--GGWVLLDEINLAS-------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQ 1665 (4600)
T ss_pred cccHHHHHhhc--CCEEEeehhhhhH-------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCch
Confidence 44445554443 4488899998762 223333322221 2467778877765
Q ss_pred HHH-hhhhccHHHHccccceEecCCCHHHHHHHHHHHHH
Q 005179 434 EHR-TQFEKDKALARRFQPVLISEPSQEDAVRILLGLRE 471 (710)
Q Consensus 434 ~~~-~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~ 471 (710)
.-. +...++..|.+||.+|.++..+.++...|...+..
T Consensus 1666 ~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1666 DQGGGRKGLPKSFLNRFSVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred hcCCCcccCCHHHhhhhheEEecccccchHHHHHHhhCC
Confidence 322 13357899999999999999999998888776543
No 158
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=1.8e-10 Score=122.83 Aligned_cols=174 Identities=17% Similarity=0.216 Sum_probs=117.3
Q ss_pred CCCCcccCHHHHHHHHHHHHcCCCCCc-EEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCcc
Q 005179 288 LIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~~~~~nv-LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~ 366 (710)
.|++++|++..++.+...+..+...|. ||+||+|+|||++|+.+++.+.+...... ...++.+... .|... .
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~--h~D~~~~~~~---~~~~i--~ 74 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE--YVDIIEFKPI---NKKSI--G 74 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCeEEeccc---cCCCC--C
Confidence 478899999999999999987766665 89999999999999999999865322111 1112222110 11111 1
Q ss_pred HHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--CeEEEEccChHHHHhhhh
Q 005179 367 LEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFE 440 (710)
Q Consensus 367 ~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~att~~~~~~~~~ 440 (710)
.+.++.+.+.+.. .+.-|++||++|.+ ....+|.|+..+++. ...+|.+|+..+ .
T Consensus 75 -v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-------------~~~a~naLLK~LEepp~~t~~il~~~~~~-----~ 135 (313)
T PRK05564 75 -VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-------------TEQAQNAFLKTIEEPPKGVFIILLCENLE-----Q 135 (313)
T ss_pred -HHHHHHHHHHHhcCcccCCceEEEEechhhc-------------CHHHHHHHHHHhcCCCCCeEEEEEeCChH-----h
Confidence 1225555554432 34569999999999 556788898888862 344554444433 6
Q ss_pred ccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 441 ~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
+-+++++|++.+.+.+|+.++....++.... .++++.++.++.++.+
T Consensus 136 ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~~~g 182 (313)
T PRK05564 136 ILDTIKSRCQIYKLNRLSKEEIEKFISYKYN--------DIKEEEKKSAIAFSDG 182 (313)
T ss_pred CcHHHHhhceeeeCCCcCHHHHHHHHHHHhc--------CCCHHHHHHHHHHcCC
Confidence 7799999999999999999987666653221 4667777766666543
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.20 E-value=4.6e-10 Score=133.89 Aligned_cols=182 Identities=19% Similarity=0.256 Sum_probs=121.0
Q ss_pred CCCcccCHHHHHHHHHHHHcC--------CC-CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh
Q 005179 289 IDPVIGRETEIQRIIQILCRR--------TK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA 359 (710)
Q Consensus 289 l~~liGr~~~i~~l~~~L~~~--------~~-~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~ 359 (710)
...++|++..+..+...+.+. .+ .+++|+||+|||||++|++|++.+... +..++.++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~-------~~~~i~id~se~~~ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS-------DDAMVRIDMSEFME 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC-------CCcEEEEEhHHhhh
Confidence 346899999999888876542 11 357999999999999999999988432 33466677665532
Q ss_pred --------cc--ccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCC------
Q 005179 360 --------GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------ 423 (710)
Q Consensus 360 --------g~--~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~------ 423 (710)
|. .+.|.-+ -..+.+.+...+..||||||++.+ ..++++.|.++++.|.
T Consensus 640 ~~~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDEieka-------------~~~v~~~Ll~ile~g~l~d~~g 704 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKA-------------HPDVFNILLQVLDDGRLTDGQG 704 (857)
T ss_pred hhhHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEeehhhC-------------CHHHHHHHHHHHhhCceecCCc
Confidence 11 1111111 011223334455689999999988 5567888887776542
Q ss_pred -------eEEEEccChH--HHH------------h------hhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHh
Q 005179 424 -------LQCIASTTQD--EHR------------T------QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA 475 (710)
Q Consensus 424 -------v~vI~att~~--~~~------------~------~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~ 475 (710)
.++|.|+|.. .+. . .....|.|.+|++ .+.+.+++.++...|++..+.+...
T Consensus 705 r~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~ 784 (857)
T PRK10865 705 RTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYK 784 (857)
T ss_pred eEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHH
Confidence 3377777752 111 0 0123588999995 7888999999999999887766432
Q ss_pred -----hcCCCCCHHHHHHHHHH
Q 005179 476 -----HHNCKFTLEAINAAVHL 492 (710)
Q Consensus 476 -----~~~~~i~~~~l~~l~~l 492 (710)
...+.+++++++.++..
T Consensus 785 rl~~~gi~l~is~~al~~L~~~ 806 (857)
T PRK10865 785 RLEERGYEIHISDEALKLLSEN 806 (857)
T ss_pred HHHhCCCcCcCCHHHHHHHHHc
Confidence 23457899999888765
No 160
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.17 E-value=3.9e-10 Score=111.04 Aligned_cols=160 Identities=19% Similarity=0.215 Sum_probs=103.5
Q ss_pred HHHHHHHcCCC-CCcEEEcCCCChHHHHHHHHHHHHHhcCCCcccc---------------CceEEEeehhhhhhccccC
Q 005179 301 RIIQILCRRTK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL---------------SKRIMSLDMGLLMAGAKER 364 (710)
Q Consensus 301 ~l~~~L~~~~~-~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~---------------~~~v~~ld~~~l~~g~~~~ 364 (710)
.+.+.+..+.. ..+||+||+|+|||++++.+++.+.+.. +.... ...+..++.. +.. .
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~-~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~----~~~-~ 76 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQ-PGGGEPCGECPSCRLIEAGNHPDLHRLEPE----GQS-I 76 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCcEEEeccc----cCc-C
Confidence 34455555444 4589999999999999999999986531 00000 0011111110 000 1
Q ss_pred ccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--CeEEEEccChHHHHhh
Q 005179 365 GELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQ 438 (710)
Q Consensus 365 g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~att~~~~~~~ 438 (710)
-.+.++.+++.+.. ....|++|||+|.+ ..+.++.|+.++++. ...+|.+++...
T Consensus 77 --~~~~i~~i~~~~~~~~~~~~~kviiide~~~l-------------~~~~~~~Ll~~le~~~~~~~~il~~~~~~---- 137 (188)
T TIGR00678 77 --KVDQVRELVEFLSRTPQESGRRVVIIEDAERM-------------NEAAANALLKTLEEPPPNTLFILITPSPE---- 137 (188)
T ss_pred --CHHHHHHHHHHHccCcccCCeEEEEEechhhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChH----
Confidence 12335555655543 34579999999999 344567777777753 355666555432
Q ss_pred hhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 439 ~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
.+.+++.+|+..+.+.+|+.++..++|... + +++++++.++..+.+.
T Consensus 138 -~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 138 -KLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGGS 184 (188)
T ss_pred -hChHHHHhhcEEeeCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCCC
Confidence 578999999999999999999987777643 3 7888888888876643
No 161
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.16 E-value=4.8e-10 Score=113.74 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=144.5
Q ss_pred hhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEE
Q 005179 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (710)
Q Consensus 271 ~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~ 350 (710)
+.-.++.-+|.+++++..+++++++++.+..+.+......-.|+|+|||||+|||+.+.+.|..+.+.. + .+..+.
T Consensus 22 p~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~-~---~~~m~l 97 (360)
T KOG0990|consen 22 PQSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPH-P---TTSMLL 97 (360)
T ss_pred CCCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCC-C---chhHHH
Confidence 344567789999999999999999999999888887777778999999999999999999999885421 0 011122
Q ss_pred EeehhhhhhccccCccHHHHHHHHHHHHHh-------cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--
Q 005179 351 SLDMGLLMAGAKERGELEARVTTLISEIQK-------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR-- 421 (710)
Q Consensus 351 ~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~-------~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~-- 421 (710)
+++.++ ....+-...++ ..+...+. ....++++||+|.+ ..++++.|++.++.
T Consensus 98 elnaSd----~rgid~vr~qi-~~fast~~~~~fst~~~fKlvILDEADaM-------------T~~AQnALRRviek~t 159 (360)
T KOG0990|consen 98 ELNASD----DRGIDPVRQQI-HLFASTQQPTTYSTHAAFKLVILDEADAM-------------TRDAQNALRRVIEKYT 159 (360)
T ss_pred HhhccC----ccCCcchHHHH-HHHHhhccceeccccCceeEEEecchhHh-------------hHHHHHHHHHHHHHhc
Confidence 222211 11122222222 22222221 24568999999999 67889999887663
Q ss_pred CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCC
Q 005179 422 GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501 (710)
Q Consensus 422 ~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~ 501 (710)
.+++++..+++.. ...|++.+||..+++.+.+..+...++.++++ .....++++...+++.++.+-+.
T Consensus 160 ~n~rF~ii~n~~~-----ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e----~e~~~~~~~~~~a~~r~s~gDmr--- 227 (360)
T KOG0990|consen 160 ANTRFATISNPPQ-----KIHPAQQSRCTRFRFAPLTMAQQTERQSHIRE----SEQKETNPEGYSALGRLSVGDMR--- 227 (360)
T ss_pred cceEEEEeccChh-----hcCchhhcccccCCCCCCChhhhhhHHHHHHh----cchhhcCHHHHHHHHHHhHHHHH---
Confidence 4556666667765 67899999999999999999888888888776 33567788887777666555332
Q ss_pred CcchHHHHHHHHH
Q 005179 502 LPDKAIDLVDEAG 514 (710)
Q Consensus 502 ~p~~ai~ll~~a~ 514 (710)
++++.|+...
T Consensus 228 ---~a~n~Lqs~~ 237 (360)
T KOG0990|consen 228 ---VALNYLQSIL 237 (360)
T ss_pred ---HHHHHHHHHH
Confidence 3555555433
No 162
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.16 E-value=1.3e-10 Score=124.06 Aligned_cols=180 Identities=19% Similarity=0.266 Sum_probs=109.5
Q ss_pred cccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh--------cc
Q 005179 292 VIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--------GA 361 (710)
Q Consensus 292 liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~--------g~ 361 (710)
+||.+..++++.+.+.+ ....+|||+|++||||+++|++|....... +.+++.+||..+.. |.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~-------~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW-------QGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc-------CCCeEEEeCCCCChHHHHHHHhcc
Confidence 47888888777776544 456789999999999999999998765332 44566666654321 10
Q ss_pred ccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------CeEEEE
Q 005179 362 KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIA 428 (710)
Q Consensus 362 ~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~ 428 (710)
..|.+......-...+....+.+||||||+.| ..+.+..|..+++.+ ++++|+
T Consensus 74 -~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 139 (329)
T TIGR02974 74 -EAGAFTGAQKRHQGRFERADGGTLFLDELATA-------------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVC 139 (329)
T ss_pred -ccccccCcccccCCchhhCCCCEEEeCChHhC-------------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEE
Confidence 00100000000001122345679999999999 556677776666543 468899
Q ss_pred ccChHHHH--hhhhccHHHHccccceEecCCCH----HHHHHHHHHHHHHHHhhcC----CCCCHHHHHHHHHH
Q 005179 429 STTQDEHR--TQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN----CKFTLEAINAAVHL 492 (710)
Q Consensus 429 att~~~~~--~~~~~d~aL~~Rf~~I~v~~Ps~----~~~~~IL~~l~~~~~~~~~----~~i~~~~l~~l~~l 492 (710)
+|+.+-.. ..-...+.|..||..+.|..|+. ++...+++.++.++...++ ..+++++++.+..+
T Consensus 140 at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 140 ATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred echhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 88765311 11134577888997556666654 4445555555555544333 46899988877544
No 163
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.9e-11 Score=124.30 Aligned_cols=61 Identities=31% Similarity=0.453 Sum_probs=53.2
Q ss_pred ccChHHHHHHHHHHH--------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i--------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
|+|.++-++.|..+| .+-+.|+.+| .|+|||||||||||+||||+|+. +...+||+..||+
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PP----KGVLLYGPPGTGKTLLAkAVA~~---T~AtFIrvvgSEl 221 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPP----KGVLLYGPPGTGKTLLAKAVANQ---TDATFIRVVGSEL 221 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCC----CceEeeCCCCCcHHHHHHHHHhc---cCceEEEeccHHH
Confidence 677777777777666 5668899877 89999999999999999999999 8889999999998
No 164
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=5.5e-10 Score=118.20 Aligned_cols=164 Identities=15% Similarity=0.160 Sum_probs=110.3
Q ss_pred CCCCcccCHHHHHHHHHHHHcCC-CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCcc--------ccCceEEEeehhhhh
Q 005179 288 LIDPVIGRETEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF--------LLSKRIMSLDMGLLM 358 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~~~-~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~--------l~~~~v~~ld~~~l~ 358 (710)
.|++++|++..++.+...+...+ +...||+||+|+||+++|.++|+.+.+...... .....++.+......
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 46789999999999999987765 467899999999999999999999876431100 001112222111001
Q ss_pred hccc--------------cCcc-HHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 359 AGAK--------------ERGE-LEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 359 ~g~~--------------~~g~-~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
.|.. ..+. -.+.++++.+.+.. ++..|++||++|.| ....+|.|+..|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-------------~~~aaNaLLK~L 148 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-------------NEAAANALLKTL 148 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-------------CHHHHHHHHHHH
Confidence 1100 0001 01235556555542 45679999999999 556788888888
Q ss_pred cCC-CeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHH
Q 005179 420 GRG-ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGL 469 (710)
Q Consensus 420 ~~~-~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l 469 (710)
++. +.++|..++..+ .+-|++++|++.|.|.+|+.++..++|...
T Consensus 149 EEPp~~~fILi~~~~~-----~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 149 EEPGNGTLILIAPSPE-----SLLPTIVSRCQIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred hCCCCCeEEEEECChH-----hCcHHHHhhceEEecCCCCHHHHHHHHHHh
Confidence 742 334555555544 677999999999999999999988888764
No 165
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.15 E-value=1.2e-09 Score=112.05 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=83.3
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-CeEEEEccChH-------HHHhhhhccHHHHccccceEe
Q 005179 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-ELQCIASTTQD-------EHRTQFEKDKALARRFQPVLI 454 (710)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~att~~-------~~~~~~~~d~aL~~Rf~~I~v 454 (710)
|.||||||+|.| +.+...+|...|++. --++|.+||.. ++..-+.++..|.+|+-.|..
T Consensus 292 pGVLFIDEvHmL-------------DIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t 358 (450)
T COG1224 292 PGVLFIDEVHML-------------DIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIIST 358 (450)
T ss_pred cceEEEechhhh-------------hHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEec
Confidence 789999999999 788899999888754 23455555532 122334678899999989999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhh
Q 005179 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (710)
Q Consensus 455 ~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~ 517 (710)
.+++.++..+|++..+. ..++.+++++++.++.+...- .-..++.||.-|...+
T Consensus 359 ~py~~~EireIi~iRa~----ee~i~l~~~Ale~L~~ig~et-----SLRYa~qLL~pa~iiA 412 (450)
T COG1224 359 RPYSREEIREIIRIRAK----EEDIELSDDALEYLTDIGEET-----SLRYAVQLLTPASIIA 412 (450)
T ss_pred CCCCHHHHHHHHHHhhh----hhccccCHHHHHHHHhhchhh-----hHHHHHHhccHHHHHH
Confidence 99999999999997766 447899999999998875431 1233666766555433
No 166
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.14 E-value=8.7e-10 Score=115.14 Aligned_cols=109 Identities=21% Similarity=0.241 Sum_probs=72.0
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-CeEEEEccChH-------HHHhhhhccHHHHccccceEe
Q 005179 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-ELQCIASTTQD-------EHRTQFEKDKALARRFQPVLI 454 (710)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~att~~-------~~~~~~~~d~aL~~Rf~~I~v 454 (710)
|.||||||+|.| +.+...+|...++.. .-++|.+||.. ++.....++..|.+|+-.|..
T Consensus 279 pGVLFIDEvHmL-------------DiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t 345 (398)
T PF06068_consen 279 PGVLFIDEVHML-------------DIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRT 345 (398)
T ss_dssp E-EEEEESGGGS-------------BHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE
T ss_pred cceEEecchhhc-------------cHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEEC
Confidence 789999999999 788899999999864 34555566532 233345677899999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHH
Q 005179 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (710)
Q Consensus 455 ~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a 513 (710)
.+++.++..+|++-.++ ..++.+++++++.+..+....- -+.|+.|+.-|
T Consensus 346 ~py~~~ei~~Il~iR~~----~E~v~i~~~al~~L~~ig~~~S-----LRYAiqLi~~a 395 (398)
T PF06068_consen 346 KPYSEEEIKQILKIRAK----EEDVEISEDALDLLTKIGVETS-----LRYAIQLITPA 395 (398)
T ss_dssp ----HHHHHHHHHHHHH----HCT--B-HHHHHHHHHHHHHS------HHHHHHCHHHH
T ss_pred CCCCHHHHHHHHHhhhh----hhcCcCCHHHHHHHHHHhhhcc-----HHHHHHhhhhh
Confidence 99999999999997776 4589999999999987765421 13355555443
No 167
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.13 E-value=2.7e-10 Score=121.72 Aligned_cols=184 Identities=17% Similarity=0.230 Sum_probs=112.3
Q ss_pred CCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh------
Q 005179 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~------ 359 (710)
.+++++|.+..++++.+.+.+ ....+|+|+|++||||+++|++|....... +.+++.+||..+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~-------~~pfv~v~c~~~~~~~~~~~ 76 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDSE 76 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCcc-------CCCeEEEeCCCCCHHHHHHH
Confidence 356799999999988887654 456789999999999999999998654222 34566666654321
Q ss_pred --ccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------Ce
Q 005179 360 --GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (710)
Q Consensus 360 --g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v 424 (710)
|.. .+.+..........+....+..|||||++.| ....+..|..+++.+ ++
T Consensus 77 lfg~~-~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L-------------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 142 (326)
T PRK11608 77 LFGHE-AGAFTGAQKRHPGRFERADGGTLFLDELATA-------------PMLVQEKLLRVIEYGELERVGGSQPLQVNV 142 (326)
T ss_pred Hcccc-ccccCCcccccCCchhccCCCeEEeCChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceeeccE
Confidence 100 0000000000011123345678999999999 455666666555432 47
Q ss_pred EEEEccChHHHH--hhhhccHHHHccccceEecCCCHHHH----HHHHHHHHHHHHhhcC----CCCCHHHHHHHHHH
Q 005179 425 QCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDA----VRILLGLREKYEAHHN----CKFTLEAINAAVHL 492 (710)
Q Consensus 425 ~vI~att~~~~~--~~~~~d~aL~~Rf~~I~v~~Ps~~~~----~~IL~~l~~~~~~~~~----~~i~~~~l~~l~~l 492 (710)
++|++++.+-.. ..-...+.|..||..+.|..|+..+| ..++..++.++...++ ..+++++++.+..+
T Consensus 143 RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y 220 (326)
T PRK11608 143 RLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNY 220 (326)
T ss_pred EEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhC
Confidence 888887764311 11234577888997666666664444 4455555555444433 35788888776543
No 168
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.12 E-value=3.4e-10 Score=123.19 Aligned_cols=191 Identities=20% Similarity=0.319 Sum_probs=125.0
Q ss_pred CCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhh-hhccccC
Q 005179 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL-MAGAKER 364 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l-~~g~~~~ 364 (710)
...++||+...+.++.+.+.+ ....+|||+|++||||..+|++|.+.-...+-|+...||.-+.-++-.. ..| ..+
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFG-hek 217 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFG-HEK 217 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhc-ccc
Confidence 456899999999999887765 4567899999999999999999998876555454444443333222111 112 123
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------CeEEEEccC
Q 005179 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIASTT 431 (710)
Q Consensus 365 g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~att 431 (710)
|.|..-...-....+...+..||||||..| ..+++..|+..|+.+ +++||++|+
T Consensus 218 GAFTGA~~~r~G~fE~A~GGTLfLDEI~~m-------------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~ 284 (464)
T COG2204 218 GAFTGAITRRIGRFEQANGGTLFLDEIGEM-------------PLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATN 284 (464)
T ss_pred cCcCCcccccCcceeEcCCceEEeeccccC-------------CHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecC
Confidence 322222222222333456789999999998 778888888777643 577999988
Q ss_pred hHHHHhh--hhccHHHHccccceEecCCC----HHHHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHH
Q 005179 432 QDEHRTQ--FEKDKALARRFQPVLISEPS----QEDAVRILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (710)
Q Consensus 432 ~~~~~~~--~~~d~aL~~Rf~~I~v~~Ps----~~~~~~IL~~l~~~~~~~~~---~~i~~~~l~~l~~l 492 (710)
.+-.... -..-..|.-|+.++.+..|+ .++..-++++++.++....+ ..++++++..+..+
T Consensus 285 ~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y 354 (464)
T COG2204 285 RDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAY 354 (464)
T ss_pred cCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 7532111 11336677788888888887 45555566667776665544 46888888776543
No 169
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.12 E-value=5.8e-10 Score=119.67 Aligned_cols=152 Identities=24% Similarity=0.286 Sum_probs=103.6
Q ss_pred CcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHH
Q 005179 291 PVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~ 370 (710)
.++|+++.+..+...+.. +.+++|.||||||||++|+.+|+.+ +..++.+.+..-.......|.+...
T Consensus 25 ~~~g~~~~~~~~l~a~~~--~~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALLA--GGHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHHc--CCCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhHh
Confidence 388888888887766654 5789999999999999999999998 5666666655444333333332221
Q ss_pred HHH---HHHHHHhc---CC--eEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--------------CCeEEEE
Q 005179 371 VTT---LISEIQKS---GD--VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--------------GELQCIA 428 (710)
Q Consensus 371 l~~---~~~~~~~~---~~--~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--------------~~v~vI~ 428 (710)
... -....... .. .++++|||+.. ..++++.|...|+. ..+.+|+
T Consensus 93 ~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 93 ALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred hhhccCCeEEEecCCcccccceEEEEeccccC-------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 110 00000000 11 39999999987 45677777766653 3456888
Q ss_pred ccChHHHHhhhhccHHHHccc-cceEecCC-CHHHHHHHHH
Q 005179 429 STTQDEHRTQFEKDKALARRF-QPVLISEP-SQEDAVRILL 467 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~~Rf-~~I~v~~P-s~~~~~~IL~ 467 (710)
|.|+.+|.....++.++.+|| -.+.++.| +.++...++.
T Consensus 160 T~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred ccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHH
Confidence 889888888888899999999 58999999 4444444444
No 170
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.09 E-value=2.1e-10 Score=131.19 Aligned_cols=187 Identities=22% Similarity=0.318 Sum_probs=118.6
Q ss_pred hhcCCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh---
Q 005179 285 SEELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--- 359 (710)
Q Consensus 285 ~~~~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~--- 359 (710)
+.+.++.+||.+..++++.+.+.+ ....+|+|+|++||||+++|++|....... +.+++.+||..+..
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~-------~~pfv~i~c~~~~~~~~ 263 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA-------KRPFVKVNCAALSETLL 263 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC-------CCCeEEeecCCCCHHHH
Confidence 346788999999999998887654 456789999999999999999999865322 45667777654421
Q ss_pred -----ccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC------------
Q 005179 360 -----GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------ 422 (710)
Q Consensus 360 -----g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~------------ 422 (710)
|. .+|.+..........+....+.+||||||+.| ..+.+..|..+++.+
T Consensus 264 ~~~lfg~-~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 329 (534)
T TIGR01817 264 ESELFGH-EKGAFTGAIAQRKGRFELADGGTLFLDEIGEI-------------SPAFQAKLLRVLQEGEFERVGGNRTLK 329 (534)
T ss_pred HHHHcCC-CCCccCCCCcCCCCcccccCCCeEEEechhhC-------------CHHHHHHHHHHHhcCcEEECCCCceEe
Confidence 10 01110000000000122334678999999999 556677776666543
Q ss_pred -CeEEEEccChHHHH--hhhhccHHHHccccceEecCCC----HHHHHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHH
Q 005179 423 -ELQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPS----QEDAVRILLGLREKYEAHHN--CKFTLEAINAAVHL 492 (710)
Q Consensus 423 -~v~vI~att~~~~~--~~~~~d~aL~~Rf~~I~v~~Ps----~~~~~~IL~~l~~~~~~~~~--~~i~~~~l~~l~~l 492 (710)
++++|++|+.+... ..-...+.|..|+..+.+..|+ .++...+++.++.++...++ +.+++++++.+..+
T Consensus 330 ~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~ 408 (534)
T TIGR01817 330 VDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSC 408 (534)
T ss_pred ecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC
Confidence 37888887764311 1112456777888755555554 35556666777666654333 67899998877644
No 171
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.08 E-value=5.6e-09 Score=101.99 Aligned_cols=191 Identities=19% Similarity=0.267 Sum_probs=127.1
Q ss_pred CCCcccCHHHHHHHHH----HHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccC
Q 005179 289 IDPVIGRETEIQRIIQ----ILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER 364 (710)
Q Consensus 289 l~~liGr~~~i~~l~~----~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~ 364 (710)
+..++|.+.+-+.+++ .+.....||+||+|..|+|||++++++..++... +.++++++-.++..
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~~----- 126 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLAT----- 126 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc-------CCeEEEEcHHHHhh-----
Confidence 3467888877766665 4455667999999999999999999999998554 66788888766652
Q ss_pred ccHHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC------CeEEEEccChHHHHh
Q 005179 365 GELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------ELQCIASTTQDEHRT 437 (710)
Q Consensus 365 g~~e~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~------~v~vI~att~~~~~~ 437 (710)
+-.+++.++.. .+.|||+||+-.= .+.+....|+..|+.+ +|.+.+|+|.....+
T Consensus 127 ------Lp~l~~~Lr~~~~kFIlFcDDLSFe------------~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 127 ------LPDLVELLRARPEKFILFCDDLSFE------------EGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLP 188 (287)
T ss_pred ------HHHHHHHHhcCCceEEEEecCCCCC------------CCchHHHHHHHHhcCCcccCCCeEEEEEecCCccccc
Confidence 45566666653 4799999987432 2334577788887642 566667766432111
Q ss_pred -h-------h-hcc--------HHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcC
Q 005179 438 -Q-------F-EKD--------KALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (710)
Q Consensus 438 -~-------~-~~d--------~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~ 499 (710)
. . +++ -+|..||. .+.|.+++.++..+|+.++++ +.++.++++.++.-+....---++
T Consensus 189 e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~----~~~l~~~~e~l~~eAl~WAt~rg~ 264 (287)
T COG2607 189 EDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAK----HFGLDISDEELHAEALQWATTRGG 264 (287)
T ss_pred HhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHhcCC
Confidence 0 0 111 24667998 899999999999999998887 558889887766544433322222
Q ss_pred CCCcchHHHHHHHHH
Q 005179 500 RYLPDKAIDLVDEAG 514 (710)
Q Consensus 500 r~~p~~ai~ll~~a~ 514 (710)
| ...-|-.+++...
T Consensus 265 R-SGR~A~QF~~~~~ 278 (287)
T COG2607 265 R-SGRVAWQFIRDLA 278 (287)
T ss_pred C-ccHhHHHHHHHHH
Confidence 2 1234555544433
No 172
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.08 E-value=3.5e-09 Score=122.83 Aligned_cols=160 Identities=21% Similarity=0.312 Sum_probs=98.0
Q ss_pred CCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhc----CCCcc---------------------
Q 005179 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA----EVPVF--------------------- 343 (710)
Q Consensus 289 l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~----~~p~~--------------------- 343 (710)
|..++|++..+..+.-.+..+...++||.|++|||||++|++|+..+... ..+..
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 56799999888776655554455679999999999999999999887210 00000
Q ss_pred ccCceEEEeehhhh---hhccccCccHHHHHHH---H--HHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhh
Q 005179 344 LLSKRIMSLDMGLL---MAGAKERGELEARVTT---L--ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL 415 (710)
Q Consensus 344 l~~~~v~~ld~~~l---~~g~~~~g~~e~~l~~---~--~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L 415 (710)
.....++.+.++.. +.|.. +++..+.. . -..+....+.||||||++.+ ....++.|
T Consensus 83 ~~~~pfv~~p~~~t~~~l~G~~---d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l-------------~~~~q~~L 146 (633)
T TIGR02442 83 QRPVPFVNLPLGATEDRVVGSL---DIERALREGEKAFQPGLLAEAHRGILYIDEVNLL-------------DDHLVDVL 146 (633)
T ss_pred cCCCCeeeCCCCCcHHHcCCcc---cHHHHhhcCCeeecCcceeecCCCeEEeChhhhC-------------CHHHHHHH
Confidence 00123333322211 01110 01111100 0 00111234569999999999 55677788
Q ss_pred cccccCC---------------CeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCC-HHHHHHHHHH
Q 005179 416 KPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPS-QEDAVRILLG 468 (710)
Q Consensus 416 ~~~l~~~---------------~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps-~~~~~~IL~~ 468 (710)
...|+.+ .+.+|+++|+.+ ..+.++|..||. .|.++.+. .+++.++++.
T Consensus 147 l~~le~g~~~v~r~g~~~~~~~~~~lIat~np~e----g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 147 LDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEE----GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred HHHHhcCCEEEEECCceeeecCCeEEEEecCCCC----CCCCHHHHhhcceEEEccCCCchHHHHHHHHH
Confidence 7777655 367889888753 247789999997 57776664 5777777764
No 173
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.08 E-value=6.9e-10 Score=123.07 Aligned_cols=149 Identities=20% Similarity=0.236 Sum_probs=100.7
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHH--H--hcCCeEEE
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI--Q--KSGDVILF 387 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~--~--~~~~~IL~ 387 (710)
.-+||+||||.||||||+-+|+.. |+.+++++.++-..+ ..+++++..++..= - ...|.+|+
T Consensus 327 KilLL~GppGlGKTTLAHViAkqa----------GYsVvEINASDeRt~----~~v~~kI~~avq~~s~l~adsrP~CLV 392 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQA----------GYSVVEINASDERTA----PMVKEKIENAVQNHSVLDADSRPVCLV 392 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhc----------CceEEEecccccccH----HHHHHHHHHHHhhccccccCCCcceEE
Confidence 347999999999999999999998 999999987664432 23444444443321 1 14689999
Q ss_pred EccchhhhhCCCCCCCCCCChHhHHHhhccccc--------------------CC---CeEEEEccChHHHHhhhhccHH
Q 005179 388 IDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--------------------RG---ELQCIASTTQDEHRTQFEKDKA 444 (710)
Q Consensus 388 IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--------------------~~---~v~vI~att~~~~~~~~~~d~a 444 (710)
|||||-- ..-+.+.|+.++. ++ .-.||+.||.. ..|+
T Consensus 393 iDEIDGa-------------~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL-------YaPa 452 (877)
T KOG1969|consen 393 IDEIDGA-------------PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL-------YAPA 452 (877)
T ss_pred EecccCC-------------cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc-------cchh
Confidence 9999743 1112222222221 00 01256666662 3467
Q ss_pred HHc--cc-cceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q 005179 445 LAR--RF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (710)
Q Consensus 445 L~~--Rf-~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~ 498 (710)
|+. -| ..|.|.+|+.....+-|+.++.+ .++..+..++..+++++..-+.
T Consensus 453 LR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~r----E~mr~d~~aL~~L~el~~~DIR 505 (877)
T KOG1969|consen 453 LRPLRPFAEIIAFVPPSQSRLVERLNEICHR----ENMRADSKALNALCELTQNDIR 505 (877)
T ss_pred hhhcccceEEEEecCCChhHHHHHHHHHHhh----hcCCCCHHHHHHHHHHhcchHH
Confidence 765 23 37899999998888888888774 4899999999999999886554
No 174
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.08 E-value=3e-10 Score=115.18 Aligned_cols=198 Identities=20% Similarity=0.282 Sum_probs=105.6
Q ss_pred cccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCC-CccccCceEEEe-ehhhh------------
Q 005179 292 VIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV-PVFLLSKRIMSL-DMGLL------------ 357 (710)
Q Consensus 292 liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~-p~~l~~~~v~~l-d~~~l------------ 357 (710)
++||+.+++.|.+.+.......++|+||.|+|||++++.+.+.+..... ..+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSE 80 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHH
Confidence 5899999999999998877788999999999999999999988733221 111111110000 00000
Q ss_pred -hh-cc----------ccCccHHHHHHHHHHHHHhcC-CeEEEEccchhhh-hCCCCCCCCCCChHhHHHhhcccccCCC
Q 005179 358 -MA-GA----------KERGELEARVTTLISEIQKSG-DVILFIDEVHTLI-GSGTVGRGNKGTGLDISNLLKPSLGRGE 423 (710)
Q Consensus 358 -~~-g~----------~~~g~~e~~l~~~~~~~~~~~-~~IL~IDEid~l~-~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 423 (710)
.. .. .........+..+++.+...+ +.||+|||++.+. ..... ......+.+.+.......+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 81 ALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED----KDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT----HHHHHHHHHHHHH----TT
T ss_pred HHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch----HHHHHHHHHHHhhccccCC
Confidence 00 00 011234455677777776543 5899999999997 21100 0112234444444444566
Q ss_pred eEEEEccChHHHH-hhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 424 LQCIASTTQDEHR-TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 424 v~vI~att~~~~~-~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
+.+|.+++...+. ........+..|+..+.+++.+.++..+++....... .++.++++.++.+..++.++
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCC
Confidence 6655555544322 2233445566777789999999999998888765532 12245899999999888764
No 175
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.07 E-value=3.1e-09 Score=113.88 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=105.2
Q ss_pred CcccCHHHHHHHHHHHH-cCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCccc--------------cCceEEEeeh
Q 005179 291 PVIGRETEIQRIIQILC-RRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL--------------LSKRIMSLDM 354 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~-~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~l--------------~~~~v~~ld~ 354 (710)
+++|.+..+.++..... .....+ +||+||||+|||++|.++|+.+.+....... ....+++++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 56778888888877766 444566 9999999999999999999999653321111 1234555554
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEE
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIA 428 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 428 (710)
++... ..-..+.++.+.+.... .+.-|++|||+|.| ..++++.|+..++. .+.++|.
T Consensus 82 s~~~~----~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-------------t~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 82 SDLRK----IDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-------------TEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred cccCC----CcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-------------hHHHHHHHHHHhccCCCCeEEEE
Confidence 33221 11234456666555433 34579999999999 56788888888874 5677888
Q ss_pred ccChHHHHhhhhccHHHHccccceEecCCCHHHHHHH
Q 005179 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRI 465 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~I 465 (710)
+|+... .+-+.+++|+..+.|.+|+.......
T Consensus 145 ~~n~~~-----~il~tI~SRc~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 145 ITNDPS-----KILPTIRSRCQRIRFKPPSRLEAIAW 176 (325)
T ss_pred EcCChh-----hccchhhhcceeeecCCchHHHHHHH
Confidence 888554 56679999999999988665544333
No 176
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.06 E-value=4.4e-10 Score=120.23 Aligned_cols=203 Identities=20% Similarity=0.294 Sum_probs=122.4
Q ss_pred cCCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcccc-
Q 005179 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE- 363 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~- 363 (710)
..++.+||.+..++++++.+.+ +...++||+|++||||+.+|+.|....... ...+++.++|..+......
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~------~~~PFI~~NCa~~~en~~~~ 148 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR------AEAPFIAFNCAAYSENLQEA 148 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc------cCCCEEEEEHHHhCcCHHHH
Confidence 3466799999998888887655 456789999999999999999999443221 2456667776665422100
Q ss_pred ------CccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------Ce
Q 005179 364 ------RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (710)
Q Consensus 364 ------~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v 424 (710)
.|.|.-....-....+...+.+||+|||+.| ....+..|..+|++| ++
T Consensus 149 eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~L-------------P~~~Q~kLl~~le~g~~~rvG~~~~~~~dV 215 (403)
T COG1221 149 ELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRL-------------PPEGQEKLLRVLEEGEYRRVGGSQPRPVDV 215 (403)
T ss_pred HHhccccceeecccCCcCchheecCCCEEehhhhhhC-------------CHhHHHHHHHHHHcCceEecCCCCCcCCCc
Confidence 1111000000011122345779999999999 555677777777653 57
Q ss_pred EEEEccChHHHHhhhhccHHHHccccceEecCCCH----HHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHhhhhh
Q 005179 425 QCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHNCKFT---LEAINAAVHLSARYI 497 (710)
Q Consensus 425 ~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~----~~~~~IL~~l~~~~~~~~~~~i~---~~~l~~l~~ls~~~i 497 (710)
++|++|+.+--...+.- ..|.+|...+.|..|+. +|+..++++++..+....+..+. ++++..+..+
T Consensus 216 Rli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y----- 289 (403)
T COG1221 216 RLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAY----- 289 (403)
T ss_pred eeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC-----
Confidence 78999887643333322 36777665566666664 45555666677766666665443 3445444322
Q ss_pred cCCCCcc---hHHHHHHHHHhhh
Q 005179 498 SDRYLPD---KAIDLVDEAGSRA 517 (710)
Q Consensus 498 ~~r~~p~---~ai~ll~~a~~~~ 517 (710)
.+|+ ....+++.+|...
T Consensus 290 ---~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 290 ---DWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred ---CCCCcHHHHHHHHHHHHHHh
Confidence 1233 3455666666544
No 177
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.05 E-value=1e-09 Score=102.17 Aligned_cols=144 Identities=24% Similarity=0.329 Sum_probs=89.8
Q ss_pred ccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHH-H
Q 005179 293 IGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR-V 371 (710)
Q Consensus 293 iGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~-l 371 (710)
+|++..+..+...+......+++|+||||+|||++++.+++.+.. .+..++.++................. .
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhhhhhHHHHHhhhhhH
Confidence 467888888888888777788999999999999999999998842 24567777765544222111100000 0
Q ss_pred HHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc----CCCeEEEEccChHHHHhhhhccHHHHc
Q 005179 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIASTTQDEHRTQFEKDKALAR 447 (710)
Q Consensus 372 ~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~att~~~~~~~~~~d~aL~~ 447 (710)
...........+.+|+|||++.+... ....+...+..... ...+.+|++++.... ...++.+.+
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~ 141 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRG---------AQNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYD 141 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhHH---------HHHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHh
Confidence 11112222345789999999987111 12233344444332 367888888877642 356788889
Q ss_pred ccc-ceEec
Q 005179 448 RFQ-PVLIS 455 (710)
Q Consensus 448 Rf~-~I~v~ 455 (710)
||. .|.++
T Consensus 142 r~~~~i~~~ 150 (151)
T cd00009 142 RLDIRIVIP 150 (151)
T ss_pred hhccEeecC
Confidence 995 55543
No 178
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=7.7e-10 Score=118.35 Aligned_cols=154 Identities=17% Similarity=0.170 Sum_probs=106.5
Q ss_pred CCCccc-CHHHHHHHHHHHHcCCCCCc-EEEcCCCChHHHHHHHHHHHHHhcCCCccc--------------cCceEEEe
Q 005179 289 IDPVIG-RETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFL--------------LSKRIMSL 352 (710)
Q Consensus 289 l~~liG-r~~~i~~l~~~L~~~~~~nv-LL~GppG~GKT~la~~la~~l~~~~~p~~l--------------~~~~v~~l 352 (710)
++.++| ++..++.+...+...+..|. ||+||+|+|||++|+.+++.+.+....... ....+..+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 456788 78888888888887766665 899999999999999999998654311000 00011121
Q ss_pred ehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEE
Q 005179 353 DMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQC 426 (710)
Q Consensus 353 d~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~v 426 (710)
... |... ..+.++.+.+.+.. ++.-|++|||+|.+ ..+.+|.|+..|++ ....+
T Consensus 84 ~~~----~~~i---~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-------------~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 84 APD----GQSI---KKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-------------TASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred ccc----cccC---CHHHHHHHHHHHhhCCcccCceEEEeehHhhh-------------CHHHHHHHHHHhcCCCCCceE
Confidence 110 1110 12335555555432 34569999999999 56678999999986 56677
Q ss_pred EEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHH
Q 005179 427 IASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~ 467 (710)
|.+|+... .+-+++++|++.+.+.+|+.++..++|+
T Consensus 144 Il~t~~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 144 ILLTENKH-----QILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred EEEeCChH-----hCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 77666544 6779999999999999999998766664
No 179
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.04 E-value=1.6e-09 Score=122.82 Aligned_cols=184 Identities=22% Similarity=0.293 Sum_probs=116.3
Q ss_pred CCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh------
Q 005179 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~------ 359 (710)
.++.+||++..++++.+.+.+ ....+|+|+|++||||+++|++|....... +.+++.+||..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-------~~p~v~v~c~~~~~~~~e~~ 257 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA-------DKPLVYLNCAALPESLAESE 257 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC-------CCCeEEEEcccCChHHHHHH
Confidence 467899999999988887655 456789999999999999999999875332 44566666654421
Q ss_pred --ccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------Ce
Q 005179 360 --GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (710)
Q Consensus 360 --g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v 424 (710)
|. ..|.+......-...+....+..||||||+.| ..+.+..|..+++.+ ++
T Consensus 258 lfG~-~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 323 (509)
T PRK05022 258 LFGH-VKGAFTGAISNRSGKFELADGGTLFLDEIGEL-------------PLALQAKLLRVLQYGEIQRVGSDRSLRVDV 323 (509)
T ss_pred hcCc-cccccCCCcccCCcchhhcCCCEEEecChhhC-------------CHHHHHHHHHHHhcCCEeeCCCCcceecce
Confidence 10 01111000000000122344678999999999 555666666666543 46
Q ss_pred EEEEccChHHHHh--hhhccHHHHccccceEecCCCHH----HHHHHHHHHHHHHHhhc---CCCCCHHHHHHHHHH
Q 005179 425 QCIASTTQDEHRT--QFEKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHH---NCKFTLEAINAAVHL 492 (710)
Q Consensus 425 ~vI~att~~~~~~--~~~~d~aL~~Rf~~I~v~~Ps~~----~~~~IL~~l~~~~~~~~---~~~i~~~~l~~l~~l 492 (710)
++|++|+.+-... .-.....|..|+..+.|..|+.. +...+++.++.++...+ .+.+++++++.+..+
T Consensus 324 RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y 400 (509)
T PRK05022 324 RVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAY 400 (509)
T ss_pred EEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 8898887653111 11245677778876666666644 44455556666655443 367999998877644
No 180
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.03 E-value=6.7e-09 Score=121.87 Aligned_cols=149 Identities=15% Similarity=0.282 Sum_probs=97.9
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee------hhhhhhc--cccCccHHHHHHHHHHHHHhc
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD------MGLLMAG--AKERGELEARVTTLISEIQKS 381 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld------~~~l~~g--~~~~g~~e~~l~~~~~~~~~~ 381 (710)
...++||.||..+|||+++..+|+.. +.+++.++ +...+.. +...|.+.-+=..+++.++.
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~t----------ghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~- 955 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARET----------GHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR- 955 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHh----------CccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc-
Confidence 45678999999999999999999987 44555543 2222210 11233222222234444443
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC----------------CeEEEEccChHH-HHhhhhccHH
Q 005179 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------------ELQCIASTTQDE-HRTQFEKDKA 444 (710)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~----------------~v~vI~att~~~-~~~~~~~d~a 444 (710)
+.++++||+... ..++...|..+|..+ ++.+.+|-|++. |.+...+..+
T Consensus 956 -GyWIVLDELNLA-------------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrA 1021 (4600)
T COG5271 956 -GYWIVLDELNLA-------------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRA 1021 (4600)
T ss_pred -CcEEEeeccccC-------------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHH
Confidence 458999999776 456777776666532 455677767553 5555567899
Q ss_pred HHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005179 445 LARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (710)
Q Consensus 445 L~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~l 492 (710)
|++||-.+.|..-..++...||++ ++.|.+.....+++.
T Consensus 1022 FRNRFlE~hFddipedEle~ILh~---------rc~iapSyakKiVeV 1060 (4600)
T COG5271 1022 FRNRFLEMHFDDIPEDELEEILHG---------RCEIAPSYAKKIVEV 1060 (4600)
T ss_pred HHhhhHhhhcccCcHHHHHHHHhc---------cCccCHHHHHHHHHH
Confidence 999999999999999998888875 345666655555544
No 181
>PHA02244 ATPase-like protein
Probab=99.03 E-value=1.4e-09 Score=114.77 Aligned_cols=123 Identities=18% Similarity=0.268 Sum_probs=78.0
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh--hh-hhcc-ccCccHHHHHHHHHHHHHhcCCeE
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG--LL-MAGA-KERGELEARVTTLISEIQKSGDVI 385 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~--~l-~~g~-~~~g~~e~~l~~~~~~~~~~~~~I 385 (710)
.+.+++|+||||||||++|++++..+ +.+++.++.. .+ ..|. ...|.|. -..++..+. .+.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~~g~~~--dgpLl~A~~--~Ggv 183 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDANGKFH--ETPFYEAFK--KGGL 183 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhccccccccccc--chHHHHHhh--cCCE
Confidence 45689999999999999999999987 4444444311 11 0110 1122221 112333232 3569
Q ss_pred EEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-------------CCCeEEEEccChHH------HHhhhhccHHHH
Q 005179 386 LFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------------RGELQCIASTTQDE------HRTQFEKDKALA 446 (710)
Q Consensus 386 L~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-------------~~~v~vI~att~~~------~~~~~~~d~aL~ 446 (710)
|||||++.+ ..+++..|..+++ ..++++|+|+|+.. |.....++++++
T Consensus 184 LiLDEId~a-------------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~All 250 (383)
T PHA02244 184 FFIDEIDAS-------------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATL 250 (383)
T ss_pred EEEeCcCcC-------------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHH
Confidence 999999987 3344444444443 24678999988742 212346789999
Q ss_pred ccccceEecCCCH
Q 005179 447 RRFQPVLISEPSQ 459 (710)
Q Consensus 447 ~Rf~~I~v~~Ps~ 459 (710)
+||..|.++.|+.
T Consensus 251 DRFv~I~~dyp~~ 263 (383)
T PHA02244 251 DRFAPIEFDYDEK 263 (383)
T ss_pred hhcEEeeCCCCcH
Confidence 9999999999973
No 182
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.03 E-value=2.3e-09 Score=127.30 Aligned_cols=104 Identities=19% Similarity=0.212 Sum_probs=81.1
Q ss_pred CcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCC
Q 005179 590 AVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669 (710)
Q Consensus 590 ~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpG 669 (710)
..-....+...++.++++|+.+.+.+ ...+..+++.|.+.++||+++++.|...+...+..- .+..| ++||+||||
T Consensus 282 ~~~~~~~~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~-~~~~~--~lll~GppG 357 (775)
T TIGR00763 282 SSSEFTVTRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRG-KMKGP--ILCLVGPPG 357 (775)
T ss_pred CCchHHHHHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-CCCCc--eEEEECCCC
Confidence 34455567889999999999987766 667889999999999999999999988664433211 11111 799999999
Q ss_pred CcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 670 VGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 670 tGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
||||++|++||+.+. ..+++++++.+.+
T Consensus 358 ~GKT~lAk~iA~~l~---~~~~~i~~~~~~~ 385 (775)
T TIGR00763 358 VGKTSLGKSIAKALN---RKFVRFSLGGVRD 385 (775)
T ss_pred CCHHHHHHHHHHHhc---CCeEEEeCCCccc
Confidence 999999999999973 4788888766543
No 183
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.03 E-value=5.5e-10 Score=119.61 Aligned_cols=185 Identities=20% Similarity=0.310 Sum_probs=118.2
Q ss_pred CCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhc-----
Q 005179 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG----- 360 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g----- 360 (710)
.+..+||+...+.++++.+.. ....+|||.|++||||..+|++|.+.-...+-| ++.++|..+-..
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kP-------fV~~NCAAlPesLlESE 293 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKP-------FVKLNCAALPESLLESE 293 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCC-------ceeeeccccchHHHHHH
Confidence 456799999999998887654 456789999999999999999999887655444 445554443211
Q ss_pred --cccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------CeE
Q 005179 361 --AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQ 425 (710)
Q Consensus 361 --~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 425 (710)
...+|.|.-.+..=....+-.++..||+|||..| ...++..|+..|.++ +++
T Consensus 294 LFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-------------PL~lQaKLLRvLQegEieRvG~~r~ikVDVR 360 (550)
T COG3604 294 LFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-------------PLALQAKLLRVLQEGEIERVGGDRTIKVDVR 360 (550)
T ss_pred HhcccccccccchhccCcceeecCCCeEechhhccC-------------CHHHHHHHHHHHhhcceeecCCCceeEEEEE
Confidence 1223333222211111122345778999999888 677888888777754 478
Q ss_pred EEEccChHHHHhhh--hccHHHHccccceEecCCCHH----HHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHH
Q 005179 426 CIASTTQDEHRTQF--EKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (710)
Q Consensus 426 vI~att~~~~~~~~--~~d~aL~~Rf~~I~v~~Ps~~----~~~~IL~~l~~~~~~~~~---~~i~~~~l~~l~~l 492 (710)
+|++||.+-..... +.-..|.-|+.++.+..|+.- +..-+...+++++....+ +.+++++++.+..+
T Consensus 361 iIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y 436 (550)
T COG3604 361 VIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY 436 (550)
T ss_pred EEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC
Confidence 99999986422111 112334447777777777643 333344455555554443 57899998877544
No 184
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.02 E-value=2.6e-09 Score=125.80 Aligned_cols=186 Identities=20% Similarity=0.327 Sum_probs=114.9
Q ss_pred cCCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhc----
Q 005179 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG---- 360 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g---- 360 (710)
..|++++|++..++.+.+.+.+ ....+|+|+|++|||||++|++|....... +.+++.+||..+..+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~-------~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN-------NRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-------CCCeEEEecccCChhHhhh
Confidence 4678899999999888776543 445689999999999999999998765322 456666666544211
Q ss_pred ---cccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC-------------CCe
Q 005179 361 ---AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR-------------GEL 424 (710)
Q Consensus 361 ---~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~-------------~~v 424 (710)
....|.+..........+....+.+||||||+.+ ..+.+..|..+++. .++
T Consensus 446 ~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L-------------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 446 DLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM-------------PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hhcCcccccccccccchhhHHHhcCCCeEEEechhhC-------------CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 0011111100011112233445679999999999 45566666555543 346
Q ss_pred EEEEccChHHHH--hhhhccHHHHccccceEecCCCHHHHHH----HHHHHHHHHHhhcC--C-CCCHHHHHHHHHH
Q 005179 425 QCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDAVR----ILLGLREKYEAHHN--C-KFTLEAINAAVHL 492 (710)
Q Consensus 425 ~vI~att~~~~~--~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~----IL~~l~~~~~~~~~--~-~i~~~~l~~l~~l 492 (710)
++|++|+.+-.. ..-.....|..|+..+.|..|+..+|.+ +++.++.++...++ + .+++++++.+..+
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y 589 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNM 589 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 899988765311 1112445677788777777777555544 45555555544433 2 4788888776433
No 185
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.02 E-value=2.4e-09 Score=120.53 Aligned_cols=185 Identities=17% Similarity=0.254 Sum_probs=113.6
Q ss_pred CCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHh-cCCCccccCceEEEeehhhhhh-----
Q 005179 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQ-AEVPVFLLSKRIMSLDMGLLMA----- 359 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~-~~~p~~l~~~~v~~ld~~~l~~----- 359 (710)
.|++++|.+..++++.+.+.+ ....+|||+|++||||+.+|++|...+.. .+.+..-.+.+++.+||..+..
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lles 296 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEA 296 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHH
Confidence 578899999999988887643 55678999999999999999999886211 1100111255677777765421
Q ss_pred ---ccccCccHHHH----HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC----------
Q 005179 360 ---GAKERGELEAR----VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------- 422 (710)
Q Consensus 360 ---g~~~~g~~e~~----l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~---------- 422 (710)
|. ..|.|... -..+++ ...+..||||||+.| ....+..|..+++++
T Consensus 297 eLFG~-~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~L-------------p~~~Q~kLl~~L~e~~~~r~G~~~~ 359 (538)
T PRK15424 297 ELFGY-EEGAFTGSRRGGRAGLFE---IAHGGTLFLDEIGEM-------------PLPLQTRLLRVLEEKEVTRVGGHQP 359 (538)
T ss_pred HhcCC-ccccccCccccccCCchh---ccCCCEEEEcChHhC-------------CHHHHHHHHhhhhcCeEEecCCCce
Confidence 10 01111000 001222 344678999999999 566777777777653
Q ss_pred ---CeEEEEccChHHHHhh--hhccHHHHccccceEecCCCHHHHH----HHHHHHHHHHHhhcCCCCCHHHHHHH
Q 005179 423 ---ELQCIASTTQDEHRTQ--FEKDKALARRFQPVLISEPSQEDAV----RILLGLREKYEAHHNCKFTLEAINAA 489 (710)
Q Consensus 423 ---~v~vI~att~~~~~~~--~~~d~aL~~Rf~~I~v~~Ps~~~~~----~IL~~l~~~~~~~~~~~i~~~~l~~l 489 (710)
++++|++|+.+--... -...+.|..|+..+.+..|+..+|. .+++.++.++....+..++++++...
T Consensus 360 ~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 435 (538)
T PRK15424 360 VPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGL 435 (538)
T ss_pred eccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhh
Confidence 3478888876531111 1133556678877777777755544 44445555543345666787776433
No 186
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.02 E-value=2.3e-09 Score=120.71 Aligned_cols=197 Identities=19% Similarity=0.244 Sum_probs=120.7
Q ss_pred cCCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh-----
Q 005179 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA----- 359 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~----- 359 (710)
..|++++|.+..++++.+.+.+ ....+|||+|++||||+.+|++|....... +.+++.+||..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~-------~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRR-------DFPFVAINCGAIAESLLEA 281 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcC-------CCCEEEeccccCChhHHHH
Confidence 4578899999999988887643 456789999999999999999998765333 44566666654321
Q ss_pred ---ccccCccHHHH----HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC----------
Q 005179 360 ---GAKERGELEAR----VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------- 422 (710)
Q Consensus 360 ---g~~~~g~~e~~----l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~---------- 422 (710)
|. ..|.|... -..+++ ...+..||||||+.| +.+.+..|..+++++
T Consensus 282 eLFG~-~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~L-------------p~~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 282 ELFGY-EEGAFTGARRGGRTGLIE---AAHRGTLFLDEIGEM-------------PLPLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred HhcCC-cccccccccccccccchh---hcCCceEEecChHhC-------------CHHHHHHHHHHHhcCcEEecCCCce
Confidence 11 11111000 011222 234678999999999 566777777766543
Q ss_pred ---CeEEEEccChHHHHh--hhhccHHHHccccceEecCCCHH----HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Q 005179 423 ---ELQCIASTTQDEHRT--QFEKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (710)
Q Consensus 423 ---~v~vI~att~~~~~~--~~~~d~aL~~Rf~~I~v~~Ps~~----~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls 493 (710)
++++|++|+.+-... .-...+.|..|+..+.+..|+.. +...++..++.++...+++.+++++++.+...
T Consensus 345 ~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~- 423 (526)
T TIGR02329 345 VPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGV- 423 (526)
T ss_pred eeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHH-
Confidence 347888887653111 11234566668876666666644 44455556666655555677888887763322
Q ss_pred hhhhcCCCCcchHHH
Q 005179 494 ARYISDRYLPDKAID 508 (710)
Q Consensus 494 ~~~i~~r~~p~~ai~ 508 (710)
...+....+|+....
T Consensus 424 ~~~L~~y~WPGNvrE 438 (526)
T TIGR02329 424 ADPLQRYPWPGNVRE 438 (526)
T ss_pred HHHHHhCCCCchHHH
Confidence 112223345665433
No 187
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.1e-09 Score=106.05 Aligned_cols=175 Identities=22% Similarity=0.293 Sum_probs=111.7
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCc-cHHHHHHHHHHHH----HhcCCe
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG-ELEARVTTLISEI----QKSGDV 384 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g-~~e~~l~~~~~~~----~~~~~~ 384 (710)
.+.|+||+||.|+|||.||+.||+.+ +.++.-.|...+.. ..|.| +.|..+..+++.+ ......
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATtLTE-AGYVGEDVENillkLlqaadydV~rAerG 164 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATTLTE-AGYVGEDVENILLKLLQAADYDVERAERG 164 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccchhh-ccccchhHHHHHHHHHHHcccCHHHHhCC
Confidence 35799999999999999999999999 55566666666653 23455 4566666666654 334577
Q ss_pred EEEEccchhhhhCCCCCCCC-CCChHhHHHhhcccccC-----------------------CCeEEEEccCh--------
Q 005179 385 ILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLGR-----------------------GELQCIASTTQ-------- 432 (710)
Q Consensus 385 IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l~~-----------------------~~v~vI~att~-------- 432 (710)
|+||||||.+........-. +-.+.-++..|+..++. .++.+|+...-
T Consensus 165 IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~ 244 (408)
T COG1219 165 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIK 244 (408)
T ss_pred eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHH
Confidence 99999999997653211110 11223356666655541 12333321100
Q ss_pred -----------------------HH--------HHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHH----HHHHHHhh
Q 005179 433 -----------------------DE--------HRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLG----LREKYEAH 476 (710)
Q Consensus 433 -----------------------~~--------~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~----l~~~~~~~ 476 (710)
.+ ..-.|.+-|.|.-|+. ...+.+.+.++...||.. +.++|+.-
T Consensus 245 ~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~L 324 (408)
T COG1219 245 KRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKL 324 (408)
T ss_pred HhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHH
Confidence 01 1112334577888887 567888999999999974 66666542
Q ss_pred c-----CCCCCHHHHHHHHHHhhh
Q 005179 477 H-----NCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 477 ~-----~~~i~~~~l~~l~~ls~~ 495 (710)
. .+.++++++..+++.+-.
T Consensus 325 f~~d~V~L~F~~~AL~~IA~~A~~ 348 (408)
T COG1219 325 FEMDGVELEFTEEALKAIAKKAIE 348 (408)
T ss_pred hcccCceEEEcHHHHHHHHHHHHH
Confidence 2 356899999998877643
No 188
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.01 E-value=2.1e-09 Score=116.45 Aligned_cols=162 Identities=22% Similarity=0.306 Sum_probs=92.8
Q ss_pred CCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe----ehhhhhhccccC
Q 005179 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL----DMGLLMAGAKER 364 (710)
Q Consensus 289 l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l----d~~~l~~g~~~~ 364 (710)
++++++.++.++.+...+.. +.|++|+||||||||++|+.+|..+.....+. ....+.+ +..+++.|....
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~---~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQ---RVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccc---eeeEEeecccccHHHHhcccCCC
Confidence 45577888899998888764 67999999999999999999998874322111 1111222 123344333211
Q ss_pred c-cH--H-HHHHHHHHHHHhc--CCeEEEEccchhhhhCCCCCC------CC-CCChHhHHHhh-----cccccCCCeEE
Q 005179 365 G-EL--E-ARVTTLISEIQKS--GDVILFIDEVHTLIGSGTVGR------GN-KGTGLDISNLL-----KPSLGRGELQC 426 (710)
Q Consensus 365 g-~~--e-~~l~~~~~~~~~~--~~~IL~IDEid~l~~~~~~~~------~~-~~~~~~~~~~L-----~~~l~~~~v~v 426 (710)
+ .+ . ..+.+++..+... .+.+||||||++.--..-.|. .+ ++....+.-.. ..+.--.++.+
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~I 328 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYI 328 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEE
Confidence 1 00 0 1233444555442 478999999987521110000 00 00000000000 00111246889
Q ss_pred EEccChHHHHhhhhccHHHHccccceEecC
Q 005179 427 IASTTQDEHRTQFEKDKALARRFQPVLISE 456 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~Rf~~I~v~~ 456 (710)
|||+|..+ +....+|.+|+|||..|++.+
T Consensus 329 IgTMNt~D-rs~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 329 IGLMNTAD-RSLAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred EEecCccc-cchhhccHHHHhhhheEEecC
Confidence 99999876 344568999999999888876
No 189
>PRK04132 replication factor C small subunit; Provisional
Probab=99.00 E-value=3.5e-09 Score=123.73 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=121.5
Q ss_pred cEEEc--CCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhc------CCeE
Q 005179 314 PILLG--ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS------GDVI 385 (710)
Q Consensus 314 vLL~G--ppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~------~~~I 385 (710)
-+..| |.+.||||+|++||+.+...+ .+..++++|.++.. | ...++.+++.+... +..|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~-----~~~~~lElNASd~r------g--id~IR~iIk~~a~~~~~~~~~~KV 633 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGEN-----WRHNFLELNASDER------G--INVIREKVKEFARTKPIGGASFKI 633 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhccc-----ccCeEEEEeCCCcc------c--HHHHHHHHHHHHhcCCcCCCCCEE
Confidence 35668 999999999999999873311 14567888765421 1 11245555444321 2369
Q ss_pred EEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHH
Q 005179 386 LFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAV 463 (710)
Q Consensus 386 L~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~ 463 (710)
+||||+|.| ..+.++.|+..|+. +.+.+|++||... .+.+++++||+.+.|.+|+.++..
T Consensus 634 vIIDEaD~L-------------t~~AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~ 695 (846)
T PRK04132 634 IFLDEADAL-------------TQDAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIA 695 (846)
T ss_pred EEEECcccC-------------CHHHHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHH
Confidence 999999999 55688999999995 7888999988875 677999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHH
Q 005179 464 RILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 464 ~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~ 514 (710)
..|+.++.+ .++.++++++..++..+.+- +.+++.+|+.++
T Consensus 696 ~~L~~I~~~----Egi~i~~e~L~~Ia~~s~GD------lR~AIn~Lq~~~ 736 (846)
T PRK04132 696 KRLRYIAEN----EGLELTEEGLQAILYIAEGD------MRRAINILQAAA 736 (846)
T ss_pred HHHHHHHHh----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHH
Confidence 888888773 47889999999999887764 356888887665
No 190
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.99 E-value=8.3e-10 Score=119.94 Aligned_cols=181 Identities=20% Similarity=0.321 Sum_probs=117.0
Q ss_pred cCCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh------
Q 005179 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------ 358 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~------ 358 (710)
-+|+++||...++.++++...+ +...+|||.|++||||..+|++|.+.....+ .+++.++|.++-
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~-------~PFIaiNCaAiPe~LlES 314 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRAN-------GPFIAINCAAIPETLLES 314 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccC-------CCeEEEecccCCHHHHHH
Confidence 3689999999999999887765 4557899999999999999999998765554 445555554432
Q ss_pred --hccccCccHHHHH----HHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC----------
Q 005179 359 --AGAKERGELEARV----TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------- 422 (710)
Q Consensus 359 --~g~~~~g~~e~~l----~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~---------- 422 (710)
.|. ..|.|.-.. ..+|+. +.+.-||+|||..| ...++..|+..|+.+
T Consensus 315 ELFGy-e~GAFTGA~~~GK~GlfE~---A~gGTLFLDEIgem-------------pl~LQaKLLRVLQEkei~rvG~t~~ 377 (560)
T COG3829 315 ELFGY-EKGAFTGASKGGKPGLFEL---ANGGTLFLDEIGEM-------------PLPLQAKLLRVLQEKEIERVGGTKP 377 (560)
T ss_pred HHhCc-CCccccccccCCCCcceee---ccCCeEEehhhccC-------------CHHHHHHHHHHHhhceEEecCCCCc
Confidence 111 112211111 122222 33568999999988 677888888777643
Q ss_pred ---CeEEEEccChHHHHhhhh---ccHHHHccccceEecCCCHHHH----HHHHHHHHHHHHhhcC--CC-CCHHHHHHH
Q 005179 423 ---ELQCIASTTQDEHRTQFE---KDKALARRFQPVLISEPSQEDA----VRILLGLREKYEAHHN--CK-FTLEAINAA 489 (710)
Q Consensus 423 ---~v~vI~att~~~~~~~~~---~d~aL~~Rf~~I~v~~Ps~~~~----~~IL~~l~~~~~~~~~--~~-i~~~~l~~l 489 (710)
++++|+|||.+.- +.++ .-..|.=|+.++.+.-|+..+| ..+...++.++...++ +. ++++++..+
T Consensus 378 ~~vDVRIIAATN~nL~-~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L 456 (560)
T COG3829 378 IPVDVRIIAATNRNLE-KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALL 456 (560)
T ss_pred eeeEEEEEeccCcCHH-HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHH
Confidence 5789999998641 1111 1233333778888877774444 4444555555554444 33 788888776
Q ss_pred HHH
Q 005179 490 VHL 492 (710)
Q Consensus 490 ~~l 492 (710)
..+
T Consensus 457 ~~y 459 (560)
T COG3829 457 LRY 459 (560)
T ss_pred HhC
Confidence 543
No 191
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.1e-10 Score=110.03 Aligned_cols=61 Identities=33% Similarity=0.481 Sum_probs=48.3
Q ss_pred ccChHHHHHHHHHHH--------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i--------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
|+|.+--+..|..++ .+...|+.+| .|+|+|||||||||+||||+|+. +..++||+..|||
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpp----rgvllygppg~gktml~kava~~---t~a~firvvgsef 225 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPP----RGVLLYGPPGTGKTMLAKAVANH---TTAAFIRVVGSEF 225 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCC----cceEEeCCCCCcHHHHHHHHhhc---cchheeeeccHHH
Confidence 444444444444444 4556788766 69999999999999999999998 8889999999999
No 192
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.4e-09 Score=116.46 Aligned_cols=105 Identities=23% Similarity=0.270 Sum_probs=83.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHH--HHhhcCCCCCCCCCeEEE
Q 005179 586 DDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAV--KRSRVGLKDPNRPTAAML 663 (710)
Q Consensus 586 ~~~~~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i--~~~r~gl~~p~rp~~~~L 663 (710)
.+.+..-....++..+...+.+||.+-+. +...+.+.++.|.+...|.+++++.|.+.+ +.....++.| -+|
T Consensus 281 ~m~~~SaE~~ViRnYlDwll~lPW~~~sk-~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGp-----ILc 354 (782)
T COG0466 281 TMSPMSAEATVIRNYLDWLLDLPWGKRSK-DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGP-----ILC 354 (782)
T ss_pred cCCCCCchHHHHHHHHHHHHhCCCccccc-hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCc-----EEE
Confidence 34445556667889999999999988766 455788999999999999999999998755 3334344443 689
Q ss_pred EEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 664 FCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 664 f~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
|+||||||||.|++.||+.+ ++.++|+-++=.-
T Consensus 355 LVGPPGVGKTSLgkSIA~al---~RkfvR~sLGGvr 387 (782)
T COG0466 355 LVGPPGVGKTSLGKSIAKAL---GRKFVRISLGGVR 387 (782)
T ss_pred EECCCCCCchhHHHHHHHHh---CCCEEEEecCccc
Confidence 99999999999999999995 4579998766443
No 193
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.98 E-value=2.5e-10 Score=111.33 Aligned_cols=132 Identities=21% Similarity=0.274 Sum_probs=69.1
Q ss_pred CCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh----hhhhhccccC
Q 005179 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM----GLLMAGAKER 364 (710)
Q Consensus 289 l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~----~~l~~g~~~~ 364 (710)
|.+++|++...+.+.-... .+.|+||+||||||||++|+.+...+........+.-..++++.. ..+.....++
T Consensus 2 f~dI~GQe~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr 79 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFR 79 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EE
T ss_pred hhhhcCcHHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcc
Confidence 6789999987777665444 357999999999999999999987664322111111111111100 0000000000
Q ss_pred cc-HHHHHHHHH--------HHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------
Q 005179 365 GE-LEARVTTLI--------SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------- 422 (710)
Q Consensus 365 g~-~e~~l~~~~--------~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~------------- 422 (710)
.- .......++ .++..+.+.|||+||+..+ ...+.+.|++.++++
T Consensus 80 ~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef-------------~~~vld~Lr~ple~g~v~i~R~~~~~~~ 146 (206)
T PF01078_consen 80 APHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF-------------DRSVLDALRQPLEDGEVTISRAGGSVTY 146 (206)
T ss_dssp EE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS--------------HHHHHHHHHHHHHSBEEEEETTEEEEE
T ss_pred cCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc-------------CHHHHHHHHHHHHCCeEEEEECCceEEE
Confidence 00 000011111 1223355779999999888 667888998888765
Q ss_pred --CeEEEEccChHHH
Q 005179 423 --ELQCIASTTQDEH 435 (710)
Q Consensus 423 --~v~vI~att~~~~ 435 (710)
++++|+|+|+-+.
T Consensus 147 Pa~f~lv~a~NPcpC 161 (206)
T PF01078_consen 147 PARFLLVAAMNPCPC 161 (206)
T ss_dssp B--EEEEEEE-S---
T ss_pred ecccEEEEEeccccc
Confidence 4578998887543
No 194
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.98 E-value=2.2e-09 Score=121.88 Aligned_cols=182 Identities=13% Similarity=0.234 Sum_probs=112.9
Q ss_pred hcCCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh----
Q 005179 286 EELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA---- 359 (710)
Q Consensus 286 ~~~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~---- 359 (710)
...|+.++|.+..++++++.+.+ ....+++|+|++||||+++|+++....... ..+++.+||..+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~-------~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRG-------KKPFLALNCASIPDDVVE 272 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCC-------CCCeEEeccccCCHHHHH
Confidence 45789999999988888876643 456789999999999999999987655333 34555666544321
Q ss_pred ----ccccCccHH---HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC----------
Q 005179 360 ----GAKERGELE---ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------- 422 (710)
Q Consensus 360 ----g~~~~g~~e---~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~---------- 422 (710)
|.. .|.+. ..-..+++ ...+..||||||+.| +...+..|..+++++
T Consensus 273 ~elFG~~-~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 273 SELFGHA-PGAYPNALEGKKGFFE---QANGGSVLLDEIGEM-------------SPRMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred HHhcCCC-CCCcCCcccCCCChhh---hcCCCEEEEeChhhC-------------CHHHHHHHHHHHhcCCcccCCCCcc
Confidence 110 01000 00011222 234678999999999 445566665555432
Q ss_pred ---CeEEEEccChHHH--HhhhhccHHHHccccceEecCCCHH----HHHHHHHHHHHHHHhhcC---CCCCHHHHHHHH
Q 005179 423 ---ELQCIASTTQDEH--RTQFEKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHHN---CKFTLEAINAAV 490 (710)
Q Consensus 423 ---~v~vI~att~~~~--~~~~~~d~aL~~Rf~~I~v~~Ps~~----~~~~IL~~l~~~~~~~~~---~~i~~~~l~~l~ 490 (710)
++++|++|+.+.- ...-...+.|..|+..+.+..|+.. +...+++.++.++...++ ..+++++++.+.
T Consensus 336 ~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~ 415 (520)
T PRK10820 336 VHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 415 (520)
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHh
Confidence 4678888765421 1111245778888876666666644 444455566666655544 368899887764
Q ss_pred H
Q 005179 491 H 491 (710)
Q Consensus 491 ~ 491 (710)
.
T Consensus 416 ~ 416 (520)
T PRK10820 416 R 416 (520)
T ss_pred c
Confidence 3
No 195
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.97 E-value=3.1e-08 Score=103.27 Aligned_cols=172 Identities=19% Similarity=0.251 Sum_probs=97.5
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEE--eehhhhh------hccccCcc----HHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS--LDMGLLM------AGAKERGE----LEARVTTLISE 377 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~--ld~~~l~------~g~~~~g~----~e~~l~~~~~~ 377 (710)
....++|+||+|+|||++++.++..+....+.. ..+.. .+...+. .|....+. ....+...+..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~----~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVA----AKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEE----eeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 345689999999999999999998874322110 00010 1111111 12111121 11223332222
Q ss_pred -HHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-CC-CeEEEEccChHHHHhhhh--ccHHHHcccc-c
Q 005179 378 -IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-RG-ELQCIASTTQDEHRTQFE--KDKALARRFQ-P 451 (710)
Q Consensus 378 -~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-~~-~v~vI~att~~~~~~~~~--~d~aL~~Rf~-~ 451 (710)
.....+.+|+|||+|.+... ..+....|..... ++ .+.+|.+.++. +...+. ....+.+|+. .
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~----------~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~ 186 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPE----------LLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIAS 186 (269)
T ss_pred HHhCCCCeEEEEECcccCCHH----------HHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeee
Confidence 23456789999999998211 1222222222221 22 24455555543 322222 1235777864 7
Q ss_pred eEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 452 VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 452 I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
+.+++++.++...++...+.......+..+++++++.+++.+.++
T Consensus 187 ~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~ 231 (269)
T TIGR03015 187 CHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI 231 (269)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc
Confidence 889999999999999887775533334578999999999998775
No 196
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=7.9e-09 Score=110.00 Aligned_cols=135 Identities=21% Similarity=0.256 Sum_probs=91.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCc--cc------------cCceEEEeehhhhhhccccCccHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPV--FL------------LSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~--~l------------~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~ 376 (710)
+..+||+||+|+|||++|+.+|+.+.+.+... .. ....++.+... +.+ ..--.+.++++.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~----~~~-~~i~id~iR~l~~ 96 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPE----EAD-KTIKVDQVRELVS 96 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc----CCC-CCCCHHHHHHHHH
Confidence 34478999999999999999999997642110 00 00122222110 000 0011234566665
Q ss_pred HHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChHHHHhhhhccHHHHcccc
Q 005179 377 EIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQ 450 (710)
Q Consensus 377 ~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~ 450 (710)
.+.. ++.-|++||++|.| ..+.+|.|+..|++ ++..+|.+|+..+ .+.|++++|++
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-------------~~~aaNaLLK~LEEPp~~~~fiL~t~~~~-----~ll~TI~SRc~ 158 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-------------NRNAANALLKSLEEPSGDTVLLLISHQPS-----RLLPTIKSRCQ 158 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-------------CHHHHHHHHHHHhCCCCCeEEEEEECChh-----hCcHHHHhhce
Confidence 5543 34568899999999 56788899888986 5677777777765 67899999999
Q ss_pred ceEecCCCHHHHHHHHHH
Q 005179 451 PVLISEPSQEDAVRILLG 468 (710)
Q Consensus 451 ~I~v~~Ps~~~~~~IL~~ 468 (710)
.+.|.+|+.++..+.|..
T Consensus 159 ~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQ 176 (328)
T ss_pred eeeCCCcCHHHHHHHHHH
Confidence 999999999987776653
No 197
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.95 E-value=7.1e-10 Score=103.47 Aligned_cols=111 Identities=23% Similarity=0.391 Sum_probs=66.1
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh-----cc-cc-CccHHHHHHHHHHHHHhcCCeE
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-----GA-KE-RGELEARVTTLISEIQKSGDVI 385 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~-----g~-~~-~g~~e~~l~~~~~~~~~~~~~I 385 (710)
|++|+||||||||++++.+|+.+ +.+++.+.+..... |. .. .+..+..-..+...+. .+.|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~i 68 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGI 68 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeE
Confidence 58999999999999999999998 55555555433221 10 00 0100000000111111 4689
Q ss_pred EEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC---------------C------CeEEEEccChHHHHhhhhccHH
Q 005179 386 LFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---------------G------ELQCIASTTQDEHRTQFEKDKA 444 (710)
Q Consensus 386 L~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~---------------~------~v~vI~att~~~~~~~~~~d~a 444 (710)
+||||++.. ..++.+.|.++++. . .+++|+|+|+.. .....++++
T Consensus 69 l~lDEin~a-------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~a 134 (139)
T PF07728_consen 69 LVLDEINRA-------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPA 134 (139)
T ss_dssp EEESSCGG---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHH
T ss_pred EEECCcccC-------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHH
Confidence 999999987 34556666554442 1 288999999876 445578999
Q ss_pred HHccc
Q 005179 445 LARRF 449 (710)
Q Consensus 445 L~~Rf 449 (710)
|.+||
T Consensus 135 l~~Rf 139 (139)
T PF07728_consen 135 LLDRF 139 (139)
T ss_dssp HHTT-
T ss_pred HHhhC
Confidence 99998
No 198
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.94 E-value=7.1e-10 Score=106.89 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=69.6
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEc
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFID 389 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~ID 389 (710)
...+++|+||+|||||.+|++|++.+.- -...+++.+|++.+..+......+...+...-..+......|||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~------~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllD 75 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV------GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLD 75 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-------SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc------CCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhH
Confidence 3567999999999999999999999931 1245888999988875211111111111110001111122399999
Q ss_pred cchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------CeEEEEccChH
Q 005179 390 EVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIASTTQD 433 (710)
Q Consensus 390 Eid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~att~~ 433 (710)
|||.+......+ .+.....+++.|+++++.| ++++|+|+|-.
T Consensus 76 EidKa~~~~~~~--~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 76 EIDKAHPSNSGG--ADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp TGGGCSHTTTTC--SHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred HHhhcccccccc--chhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 999996531110 1122346788888877643 56688887754
No 199
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.94 E-value=4.5e-09 Score=100.61 Aligned_cols=142 Identities=16% Similarity=0.145 Sum_probs=91.9
Q ss_pred cCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCcc-------------ccCceEEEeehhhhhh
Q 005179 294 GRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------LLSKRIMSLDMGLLMA 359 (710)
Q Consensus 294 Gr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~-------------l~~~~v~~ld~~~l~~ 359 (710)
|++..++.|...+....-.+ +||+||+|+||+++|..+++.+.+...... .....++.++....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK-- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS--
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc--
Confidence 67888899999888877676 699999999999999999999866433210 11223333322110
Q ss_pred ccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--CeEEEEccChH
Q 005179 360 GAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQD 433 (710)
Q Consensus 360 g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~att~~ 433 (710)
...-..+.++.+.+.+.. .+.-|++|||+|.| ..+++|.|+..||+. .+.+|.+|+..
T Consensus 79 ---~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-------------~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 79 ---KKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-------------TEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp ---SSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred ---cchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-------------hHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 001112345566655532 34679999999999 678899999999864 67777777765
Q ss_pred HHHhhhhccHHHHccccceEecCCC
Q 005179 434 EHRTQFEKDKALARRFQPVLISEPS 458 (710)
Q Consensus 434 ~~~~~~~~d~aL~~Rf~~I~v~~Ps 458 (710)
. .+-+++++|+..|.+.+++
T Consensus 143 ~-----~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 143 S-----KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp G-----GS-HHHHTTSEEEEE----
T ss_pred H-----HChHHHHhhceEEecCCCC
Confidence 5 6789999999999988754
No 200
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=2.2e-08 Score=105.61 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCccc-----------cCceEEEeehhhhhhcccc
Q 005179 296 ETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL-----------LSKRIMSLDMGLLMAGAKE 363 (710)
Q Consensus 296 ~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~l-----------~~~~v~~ld~~~l~~g~~~ 363 (710)
+..++++.+.+...+-.| +||+||+|+||+++|..+|+.+.+....... ..-.++.+....-..|.+.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~ 89 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccc
Confidence 346677777777766555 8899999999999999999998774311100 0011222210000001000
Q ss_pred -CccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--CeEEEEccChHHHH
Q 005179 364 -RGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHR 436 (710)
Q Consensus 364 -~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~att~~~~~ 436 (710)
..-..+.++++.+.+.. ++.-|++||++|.| ....+|.|+..||+. +.++|..++..+
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEEPp~~~~fiL~~~~~~-- 154 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-------------NRAACNALLKTLEEPSPGRYLWLISAQPA-- 154 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-------------CHHHHHHHHHHhhCCCCCCeEEEEECChh--
Confidence 00123445666655543 33469999999999 566788888889864 566666666654
Q ss_pred hhhhccHHHHccccceEecCCCHHHHHHHHH
Q 005179 437 TQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (710)
Q Consensus 437 ~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~ 467 (710)
.+-|++++||+.|.|.+|+.++....|.
T Consensus 155 ---~lLpTIrSRCq~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 155 ---RLPATIRSRCQRLEFKLPPAHEALAWLL 182 (319)
T ss_pred ---hCchHHHhhheEeeCCCcCHHHHHHHHH
Confidence 6779999999999999999988776665
No 201
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.94 E-value=6.3e-09 Score=121.73 Aligned_cols=177 Identities=19% Similarity=0.258 Sum_probs=114.9
Q ss_pred CCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCc
Q 005179 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG 365 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g 365 (710)
.|+.++|.+..++++.+.+.+ ....+++|+|++||||+++|++|.+..... +.+++.+||..+...
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~-------~~pfv~vnc~~~~~~----- 390 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA-------AGPYIAVNCQLYPDE----- 390 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc-------CCCeEEEECCCCChH-----
Confidence 688999999999888876654 456779999999999999999998866333 345666666543210
Q ss_pred cHHHHHHHHHH------------HHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-----------
Q 005179 366 ELEARVTTLIS------------EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------- 422 (710)
Q Consensus 366 ~~e~~l~~~~~------------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~----------- 422 (710)
.++ ..+|. .+....+.+||||||+.| ..+.+..|..+++.+
T Consensus 391 ~~~---~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 391 ALA---EEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL-------------SPELQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHH---HHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceE
Confidence 000 01111 122344678999999999 566777777766543
Q ss_pred --CeEEEEccChHHHH--hhhhccHHHHccccceEecCCCHHHH----HHHHHHHHHHHHhhc--CCCCCHHHHHHHHHH
Q 005179 423 --ELQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDA----VRILLGLREKYEAHH--NCKFTLEAINAAVHL 492 (710)
Q Consensus 423 --~v~vI~att~~~~~--~~~~~d~aL~~Rf~~I~v~~Ps~~~~----~~IL~~l~~~~~~~~--~~~i~~~~l~~l~~l 492 (710)
++++|++|+.+... ..-...+.|..|+..+.|..|+..+| ..+++.++.++...+ .+.+++++++.+..+
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y 534 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY 534 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC
Confidence 46789888765311 11123466777887777777765544 445555555554332 356899988877544
No 202
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.94 E-value=2.4e-09 Score=95.76 Aligned_cols=73 Identities=29% Similarity=0.468 Sum_probs=61.6
Q ss_pred HHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC--CcceeeC
Q 005179 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV--RIHYLFF 694 (710)
Q Consensus 620 l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~--~~li~~d 694 (710)
+..|+..|...++||.-|++.|..+++.-... ..|.||+ .+.|.||||||||.+++.||+.||.++ ...|...
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p~KpL-VlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f 90 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNPRKPL-VLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQF 90 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCCCCCE-EEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeee
Confidence 45788899999999999999999999877544 4789997 889999999999999999999999863 3444443
No 203
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.93 E-value=2.9e-10 Score=109.30 Aligned_cols=139 Identities=23% Similarity=0.350 Sum_probs=82.8
Q ss_pred cccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh--------cc
Q 005179 292 VIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--------GA 361 (710)
Q Consensus 292 liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~--------g~ 361 (710)
+||.+..++++++.+.+ ....+|||+|++||||+.+|++|.+..... +.+++.+||+.+.. |.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~-------~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRK-------NGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTT-------TS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcc-------cCCeEEEehhhhhcchhhhhhhcc
Confidence 57888888888887655 456889999999999999999998854322 45677777765421 11
Q ss_pred ccCccHH---HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------CeE
Q 005179 362 KERGELE---ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQ 425 (710)
Q Consensus 362 ~~~g~~e---~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 425 (710)
. .|.+. ..-..+ +....+.+||||||+.| +.+++..|..+|+.+ +++
T Consensus 74 ~-~~~~~~~~~~~~G~---l~~A~~GtL~Ld~I~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 74 E-KGAFTGARSDKKGL---LEQANGGTLFLDEIEDL-------------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp C-SSSSTTTSSEBEHH---HHHTTTSEEEEETGGGS--------------HHHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred c-cccccccccccCCc---eeeccceEEeecchhhh-------------HHHHHHHHHHHHhhchhccccccccccccce
Confidence 0 11000 000122 33455779999999999 666777777666532 578
Q ss_pred EEEccChHH--HHhhhhccHHHHccccceEe
Q 005179 426 CIASTTQDE--HRTQFEKDKALARRFQPVLI 454 (710)
Q Consensus 426 vI~att~~~--~~~~~~~d~aL~~Rf~~I~v 454 (710)
+|++|+.+- ....-...+.|.-|+..+.+
T Consensus 137 iI~st~~~l~~~v~~g~fr~dLy~rL~~~~i 167 (168)
T PF00158_consen 137 IIASTSKDLEELVEQGRFREDLYYRLNVFTI 167 (168)
T ss_dssp EEEEESS-HHHHHHTTSS-HHHHHHHTTEEE
T ss_pred EEeecCcCHHHHHHcCCChHHHHHHhceEec
Confidence 999988642 11111234556556654443
No 204
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.93 E-value=2.2e-09 Score=115.02 Aligned_cols=77 Identities=34% Similarity=0.475 Sum_probs=63.2
Q ss_pred HHHHHHhhCcccChHHHHHHHHHHHHH--hhcCCCCCCC---CCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCC
Q 005179 621 VGLEEQLKKRVIGQDEAVAAISRAVKR--SRVGLKDPNR---PTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFP 695 (710)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~i~~--~r~gl~~p~r---p~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~ 695 (710)
.++.+.|...|+||++|++.+..++.. .|.++.++.+ +..++||+||||||||++|++||+.+ +.+++++|+
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD~ 83 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh---CChheeecc
Confidence 456788999999999999999998843 4555543332 12699999999999999999999996 568999999
Q ss_pred CCCCC
Q 005179 696 SPFNS 700 (710)
Q Consensus 696 se~~~ 700 (710)
++|..
T Consensus 84 t~f~e 88 (443)
T PRK05201 84 TKFTE 88 (443)
T ss_pred hhhcc
Confidence 98865
No 205
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.6e-08 Score=106.20 Aligned_cols=175 Identities=27% Similarity=0.376 Sum_probs=113.3
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCc-cHHHHHHHHHHHH----HhcCCe
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG-ELEARVTTLISEI----QKSGDV 384 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g-~~e~~l~~~~~~~----~~~~~~ 384 (710)
.+.|+||.||+|+|||.|++.||+.+ +.++.-.|+..+... .|.| +.|..+..++..+ +++...
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQA-GYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQA-GYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhhc-ccccccHHHHHHHHHHHccCCHHHHhcC
Confidence 47899999999999999999999988 677777788777532 2444 5666677777655 345677
Q ss_pred EEEEccchhhhhCCC-CCCCCCCChHhHHHhhcccccC---------------C--------CeEEEEccCh--------
Q 005179 385 ILFIDEVHTLIGSGT-VGRGNKGTGLDISNLLKPSLGR---------------G--------ELQCIASTTQ-------- 432 (710)
Q Consensus 385 IL~IDEid~l~~~~~-~~~~~~~~~~~~~~~L~~~l~~---------------~--------~v~vI~att~-------- 432 (710)
|+||||+|.+..+.. .+..-+-.+.-++..|+.+++. + ++.+|+....
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~ 373 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIIS 373 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHH
Confidence 999999999963211 1111011233355666555541 1 2333332100
Q ss_pred -----------------------------------HHHH--------hhhhccHHHHcccc-ceEecCCCHHHHHHHHHH
Q 005179 433 -----------------------------------DEHR--------TQFEKDKALARRFQ-PVLISEPSQEDAVRILLG 468 (710)
Q Consensus 433 -----------------------------------~~~~--------~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~ 468 (710)
++.. -.+.+-|.|.-||. .+.+...+.++...||..
T Consensus 374 rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtE 453 (564)
T KOG0745|consen 374 RRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTE 453 (564)
T ss_pred HhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhc
Confidence 0000 01233477888997 688888999999999874
Q ss_pred ----HHHHHHhhc-----CCCCCHHHHHHHHHHhhh
Q 005179 469 ----LREKYEAHH-----NCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 469 ----l~~~~~~~~-----~~~i~~~~l~~l~~ls~~ 495 (710)
+..+|.... .+.+++++++.+++++-.
T Consensus 454 PknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~ 489 (564)
T KOG0745|consen 454 PKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALK 489 (564)
T ss_pred chhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHh
Confidence 566665433 356899999999887643
No 206
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.90 E-value=3.3e-08 Score=113.61 Aligned_cols=120 Identities=22% Similarity=0.277 Sum_probs=78.0
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-----------------------CeEEEEccChHHHHhh
Q 005179 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------------------ELQCIASTTQDEHRTQ 438 (710)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~vI~att~~~~~~~ 438 (710)
.+.+|||||++.| ....+..|+..|+.+ ++++|++++++. .
T Consensus 217 ngGtL~Ldei~~L-------------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~---l 280 (608)
T TIGR00764 217 HKGVLYIDEIKTM-------------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD---L 280 (608)
T ss_pred CCCEEEEEChHhC-------------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH---H
Confidence 3467777888777 234555555555321 567899999864 3
Q ss_pred hhccHHHHcccc----ceEe--c-CCCHHHHHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHhhhhhcCCCC----cchH
Q 005179 439 FEKDKALARRFQ----PVLI--S-EPSQEDAVRILLGLREKYEAH-HNCKFTLEAINAAVHLSARYISDRYL----PDKA 506 (710)
Q Consensus 439 ~~~d~aL~~Rf~----~I~v--~-~Ps~~~~~~IL~~l~~~~~~~-~~~~i~~~~l~~l~~ls~~~i~~r~~----p~~a 506 (710)
..+++.|.+||. .+.+ . +.+.+.+..+++.+....+.+ .-..++++++..+++.+.|...++.. ..+.
T Consensus 281 ~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L 360 (608)
T TIGR00764 281 EGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLREL 360 (608)
T ss_pred hhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 468999999997 1333 2 234666777766666655544 23468999999999888877655543 3556
Q ss_pred HHHHHHHHhhh
Q 005179 507 IDLVDEAGSRA 517 (710)
Q Consensus 507 i~ll~~a~~~~ 517 (710)
.+++..|...+
T Consensus 361 ~~llR~A~~iA 371 (608)
T TIGR00764 361 GGLVRAAGDIA 371 (608)
T ss_pred HHHHHHHHHHH
Confidence 66777765443
No 207
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.90 E-value=8.3e-09 Score=116.84 Aligned_cols=206 Identities=15% Similarity=0.164 Sum_probs=121.2
Q ss_pred CCcccCHHHHHHHHHHHHcCC------------CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhh
Q 005179 290 DPVIGRETEIQRIIQILCRRT------------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~~~------------~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l 357 (710)
..++|.+.....+.-.+.... ..|+||+|+||+|||++++.+++...... +..+.. .+...+
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~---~~~~~~---~~~~~l 276 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAV---YTTGKG---SSAVGL 276 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcce---EcCCCC---CCcCCc
Confidence 357888876544444443321 13899999999999999999998652210 100000 011111
Q ss_pred hhc---cccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC------------
Q 005179 358 MAG---AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------ 422 (710)
Q Consensus 358 ~~g---~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~------------ 422 (710)
... ....|++..+- ..+..+.+.+|+|||++.+ ....+..|...|+++
T Consensus 277 ~~~~~~~~~~g~~~~~~----G~l~~A~~Gil~iDEi~~l-------------~~~~q~~L~e~me~~~i~i~k~G~~~~ 339 (509)
T smart00350 277 TAAVTRDPETREFTLEG----GALVLADNGVCCIDEFDKM-------------DDSDRTAIHEAMEQQTISIAKAGITTT 339 (509)
T ss_pred cccceEccCcceEEecC----ccEEecCCCEEEEechhhC-------------CHHHHHHHHHHHhcCEEEEEeCCEEEE
Confidence 100 00112211000 0111234679999999998 334455555555432
Q ss_pred ---CeEEEEccChHH--HH------hhhhccHHHHcccc--ceEecCCCHHHHHHHHHHHHHHHHhh-------cCCCCC
Q 005179 423 ---ELQCIASTTQDE--HR------TQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAH-------HNCKFT 482 (710)
Q Consensus 423 ---~v~vI~att~~~--~~------~~~~~d~aL~~Rf~--~I~v~~Ps~~~~~~IL~~l~~~~~~~-------~~~~i~ 482 (710)
.+.+|+++|+.+ |. ..+.+++++.+||+ .+.++.|+.+...+|++++...+... ....++
T Consensus 340 l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~ 419 (509)
T smart00350 340 LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPIS 419 (509)
T ss_pred ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCC
Confidence 456899988753 11 12478999999998 45667899999999999876543211 112467
Q ss_pred HHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhh
Q 005179 483 LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI 519 (710)
Q Consensus 483 ~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~ 519 (710)
.+.+...+.+++.++.-. +++.+.+.+.......+.
T Consensus 420 ~~~l~~yi~~ar~~~~P~-ls~~~~~~i~~~y~~~R~ 455 (509)
T smart00350 420 QEFLRKYIAYAREKIKPK-LSEEAAEKLVKAYVDLRK 455 (509)
T ss_pred HHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHhcc
Confidence 778888888888744222 567777777666544443
No 208
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.87 E-value=7.4e-08 Score=102.28 Aligned_cols=161 Identities=22% Similarity=0.250 Sum_probs=99.1
Q ss_pred CcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEE--eeh--------------
Q 005179 291 PVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS--LDM-------------- 354 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~--ld~-------------- 354 (710)
-++|++..-.-|....-.+.-.++||-|+.|+||||++++|+..+....+. .+|++-. .+.
T Consensus 18 aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V---~gc~f~cdP~~P~~~c~~c~~k~~e~ 94 (423)
T COG1239 18 AIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVV---IGCPFNCDPDDPEEMCDECRAKGDEL 94 (423)
T ss_pred hhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCcccee---cCCCCCCCCCChhhhhHHHHhhcccc
Confidence 468888555444433333455789999999999999999999887432110 0110000 000
Q ss_pred hhhhhc-------cccCccHHHHH------HHHHH---------HHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHH
Q 005179 355 GLLMAG-------AKERGELEARV------TTLIS---------EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDIS 412 (710)
Q Consensus 355 ~~l~~g-------~~~~g~~e~~l------~~~~~---------~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~ 412 (710)
..+... .-.-|..+.++ ...++ .+.+....||||||+..| ...++
T Consensus 95 ~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL-------------~d~lv 161 (423)
T COG1239 95 EWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL-------------DDHLV 161 (423)
T ss_pred ccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc-------------cHHHH
Confidence 000000 00011222211 11111 112345679999999999 55678
Q ss_pred HhhcccccCC---------------CeEEEEccChHHHHhhhhccHHHHcccc-ceEecCC-CHHHHHHHHHHHHH
Q 005179 413 NLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEP-SQEDAVRILLGLRE 471 (710)
Q Consensus 413 ~~L~~~l~~~---------------~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~P-s~~~~~~IL~~l~~ 471 (710)
+.|+..++.| ++++|+|+|+++ -++-+.|+.||. .|.+..| +.+++.+|++....
T Consensus 162 d~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe----GeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 162 DALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE----GELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHhCCceeeeCceeeccCccEEEEeecCccc----cccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 8888777654 578999999985 367899999997 7888777 58888888886544
No 209
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=3.7e-08 Score=105.13 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------ccCceEEEeehhhhhhc
Q 005179 296 ETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--------------LLSKRIMSLDMGLLMAG 360 (710)
Q Consensus 296 ~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~--------------l~~~~v~~ld~~~l~~g 360 (710)
+..++++.+.+...+..| .||+||+|+||+++|.++|+.+.+.+.... .....++.+... +
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~----~ 83 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE----K 83 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc----c
Confidence 346677888777755544 579999999999999999999976421110 001112222110 0
Q ss_pred cccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChHH
Q 005179 361 AKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDE 434 (710)
Q Consensus 361 ~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~~ 434 (710)
.+ ..-..+.++++.+.+. .++.-|++||++|.| ...++|.|+..||+ ++.++|..|...+
T Consensus 84 ~~-~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (334)
T PRK07993 84 GK-SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-------------TDAAANALLKTLEEPPENTWFFLACREPA 149 (334)
T ss_pred cc-ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 00 0011234555555553 244579999999999 66788999999986 4566676666655
Q ss_pred HHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 435 ~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
.+-|++++|++.+.+++|+.++....|.. ...++++.+..++.++.+
T Consensus 150 -----~lLpTIrSRCq~~~~~~~~~~~~~~~L~~---------~~~~~~~~a~~~~~la~G 196 (334)
T PRK07993 150 -----RLLATLRSRCRLHYLAPPPEQYALTWLSR---------EVTMSQDALLAALRLSAG 196 (334)
T ss_pred -----hChHHHHhccccccCCCCCHHHHHHHHHH---------ccCCCHHHHHHHHHHcCC
Confidence 68899999999999999999886666542 123556655566666544
No 210
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.85 E-value=5.4e-09 Score=114.24 Aligned_cols=78 Identities=35% Similarity=0.404 Sum_probs=60.9
Q ss_pred HHHHHHHhhCcccChHHHHHHHHHHH----HHhhcCCC---CCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCccee
Q 005179 620 LVGLEEQLKKRVIGQDEAVAAISRAV----KRSRVGLK---DPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYL 692 (710)
Q Consensus 620 l~~l~~~L~~~v~Gq~~a~~~i~~~i----~~~r~gl~---~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~ 692 (710)
..++.+.|.+.|+||++|++.++.++ ++.+.+.. +...+.+++||+||||||||++|++||+.+ ...+++
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~ 138 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPFAI 138 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCcee
Confidence 45678888899999999999998877 33333332 122344789999999999999999999986 457999
Q ss_pred eCCCCCCC
Q 005179 693 FFPSPFNS 700 (710)
Q Consensus 693 ~d~se~~~ 700 (710)
+|++++..
T Consensus 139 id~~~l~~ 146 (412)
T PRK05342 139 ADATTLTE 146 (412)
T ss_pred cchhhccc
Confidence 99988753
No 211
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.84 E-value=2.7e-08 Score=115.77 Aligned_cols=208 Identities=15% Similarity=0.157 Sum_probs=121.3
Q ss_pred CCcccCHHHHHHHHHHHHcCC---------------------CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCce
Q 005179 290 DPVIGRETEIQRIIQILCRRT---------------------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~~~---------------------~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~ 348 (710)
..++|.+...+.++-.|.... ..|+||+|+||||||.+++.+++...... +..+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~---ytsG~~ 526 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI---YTSGKS 526 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc---cCCCCC
Confidence 457888877666554442221 12899999999999999999987542221 111222
Q ss_pred EEEeehhhhhh-ccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-----
Q 005179 349 IMSLDMGLLMA-GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----- 422 (710)
Q Consensus 349 v~~ld~~~l~~-g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~----- 422 (710)
...+.+..... -....|+|..... .+..+.+.+|+|||++.+ ....+..|..+|+++
T Consensus 527 ~s~vgLTa~~~~~d~~tG~~~le~G----aLvlAdgGtL~IDEidkm-------------s~~~Q~aLlEaMEqqtIsI~ 589 (915)
T PTZ00111 527 SSSVGLTASIKFNESDNGRAMIQPG----AVVLANGGVCCIDELDKC-------------HNESRLSLYEVMEQQTVTIA 589 (915)
T ss_pred CccccccchhhhcccccCcccccCC----cEEEcCCCeEEecchhhC-------------CHHHHHHHHHHHhCCEEEEe
Confidence 22322222211 0011122211000 122344679999999998 444555666666533
Q ss_pred ----------CeEEEEccChHHHH--------hhhhccHHHHcccc--ceEecCCCHHHHHHHHHHHHHHHHhhc-----
Q 005179 423 ----------ELQCIASTTQDEHR--------TQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHH----- 477 (710)
Q Consensus 423 ----------~v~vI~att~~~~~--------~~~~~d~aL~~Rf~--~I~v~~Ps~~~~~~IL~~l~~~~~~~~----- 477 (710)
++.||+++|+...+ ..+.+.++|.+||+ .+.++.|+.+.-..|-.+++..+...|
T Consensus 590 KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~ 669 (915)
T PTZ00111 590 KAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSG 669 (915)
T ss_pred cCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhccccccccc
Confidence 46789999985321 34667899999998 456688888877777777765431101
Q ss_pred ------------------------CCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhh
Q 005179 478 ------------------------NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518 (710)
Q Consensus 478 ------------------------~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~ 518 (710)
...++.+.+..-+.+++.++. -.+.+.|.++|.......+
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~-P~Ls~eA~~~i~~~Yv~mR 733 (915)
T PTZ00111 670 NDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCF-PKLSDEAKKVITREYVKMR 733 (915)
T ss_pred ccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHh
Confidence 012456667777777765533 2345677777766554433
No 212
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.83 E-value=6.8e-08 Score=110.90 Aligned_cols=182 Identities=20% Similarity=0.212 Sum_probs=107.1
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh---hhhhhccccCccHHHHHHH---HH--HHHHhcC
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM---GLLMAGAKERGELEARVTT---LI--SEIQKSG 382 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~---~~l~~g~~~~g~~e~~l~~---~~--~~~~~~~ 382 (710)
-.++||.|+||||||+++++++..+.. ..| ++.+.. .+.+.|.- .++..+.. .+ ..+....
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~p-------fv~i~~~~t~d~L~G~i---dl~~~~~~g~~~~~~G~L~~A~ 84 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMP-------FVELPLGVTEDRLIGGI---DVEESLAGGQRVTQPGLLDEAP 84 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCC-------eEecCcccchhhcccch---hhhhhhhcCcccCCCCCeeeCC
Confidence 568999999999999999999987632 111 222221 11111110 00000000 00 0011244
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC---------------CeEEEEccChHHHHhhhhccHHHHc
Q 005179 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALAR 447 (710)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~---------------~v~vI~att~~~~~~~~~~d~aL~~ 447 (710)
+.+|||||++.+ ....++.|...|+++ .+.+|+++|+.+... .+.++|..
T Consensus 85 ~GvL~lDEi~rl-------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g--~L~~~Lld 149 (589)
T TIGR02031 85 RGVLYVDMANLL-------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG--GLPDHLLD 149 (589)
T ss_pred CCcEeccchhhC-------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC--CCCHHHHH
Confidence 579999999999 556777777777654 367899888764222 57899999
Q ss_pred ccc-ceEecC-CCHHHHHHHHHHHHHHHH-------------------hhcCCCCCHHHHHHHHHHhhhhhcCCCCcchH
Q 005179 448 RFQ-PVLISE-PSQEDAVRILLGLREKYE-------------------AHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (710)
Q Consensus 448 Rf~-~I~v~~-Ps~~~~~~IL~~l~~~~~-------------------~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~a 506 (710)
||. .|.+.. |+.+++.+|++.....+. ....+.++++++++++.++-.+-. ..+...
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv--~s~Ra~ 227 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGI--SGHRAD 227 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCC--CCccHH
Confidence 997 455544 567778888887543221 123466777777777777644321 123445
Q ss_pred HHHHHHHHhhhhhh
Q 005179 507 IDLVDEAGSRAHIE 520 (710)
Q Consensus 507 i~ll~~a~~~~~~~ 520 (710)
+.++.-|.+.+.+.
T Consensus 228 i~~~r~ArA~Aal~ 241 (589)
T TIGR02031 228 LFAVRAAKAHAALH 241 (589)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555544443
No 213
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=9.9e-08 Score=97.52 Aligned_cols=111 Identities=25% Similarity=0.301 Sum_probs=74.9
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC------------CCeEEEEccChHHHHhhhhccHHHHcccc
Q 005179 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIASTTQDEHRTQFEKDKALARRFQ 450 (710)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------~~v~vI~att~~~~~~~~~~d~aL~~Rf~ 450 (710)
..|+||||||.++..+..+.+ +-...-++.-|+++++. .++.+|++..-.- .+--.+-|.|..||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~-sKPSDLiPELQGRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHV-AKPSDLIPELQGRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceec-CChhhcChhhcCCCc
Confidence 569999999999877653221 11122356667777763 3567887753211 111256689999997
Q ss_pred -ceEecCCCHHHHHHHHHH----HHHHHHh-----hcCCCCCHHHHHHHHHHhhh
Q 005179 451 -PVLISEPSQEDAVRILLG----LREKYEA-----HHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 451 -~I~v~~Ps~~~~~~IL~~----l~~~~~~-----~~~~~i~~~~l~~l~~ls~~ 495 (710)
.|++...+.++...||.. +..+|.. .-.+.+++++++.+++.+-.
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~ 383 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQ 383 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHH
Confidence 799999999999999874 5566653 22357889999888877543
No 214
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.2e-08 Score=107.06 Aligned_cols=101 Identities=20% Similarity=0.262 Sum_probs=79.2
Q ss_pred HHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHH
Q 005179 594 PDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKT 673 (710)
Q Consensus 594 ~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT 673 (710)
.......+...+.+||++.+.+ .-.+...+..|.+...|++++++.|...+...+.--..- . .-+||+||||||||
T Consensus 377 fnvtrNYLdwlt~LPWgk~S~E-n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~q-G--kIlCf~GPPGVGKT 452 (906)
T KOG2004|consen 377 FNVTRNYLDWLTSLPWGKSSTE-NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQ-G--KILCFVGPPGVGKT 452 (906)
T ss_pred hhHHHHHHHHHHhCCCCCCChh-hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCC-C--cEEEEeCCCCCCcc
Confidence 3445667788889999998876 456778899999999999999999998887665421111 1 16899999999999
Q ss_pred HHHHHHHHHHcCCCCcceeeCCCCCCCc
Q 005179 674 ELAKSLAACYFGSVRIHYLFFPSPFNSV 701 (710)
Q Consensus 674 ~lAkaLA~~lfg~~~~li~~d~se~~~~ 701 (710)
.+||.||+.|-. .+.||..+=..+|
T Consensus 453 SI~kSIA~ALnR---kFfRfSvGG~tDv 477 (906)
T KOG2004|consen 453 SIAKSIARALNR---KFFRFSVGGMTDV 477 (906)
T ss_pred cHHHHHHHHhCC---ceEEEeccccccH
Confidence 999999999744 6889876655554
No 215
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.81 E-value=8.4e-09 Score=110.54 Aligned_cols=75 Identities=35% Similarity=0.491 Sum_probs=61.0
Q ss_pred HHHHHHhhCcccChHHHHHHHHHHHHH--hhcCCC----CCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeC
Q 005179 621 VGLEEQLKKRVIGQDEAVAAISRAVKR--SRVGLK----DPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFF 694 (710)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~i~~--~r~gl~----~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d 694 (710)
.++.+.|.+.|+||++|++.++.++.. .|.++. .+..| .++||+||||||||++|++||+.+ +.+++.+|
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p-~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vd 79 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 79 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEee
Confidence 356778899999999999999988853 444443 22334 699999999999999999999996 56899999
Q ss_pred CCCCC
Q 005179 695 PSPFN 699 (710)
Q Consensus 695 ~se~~ 699 (710)
+++|.
T Consensus 80 at~~~ 84 (441)
T TIGR00390 80 ATKFT 84 (441)
T ss_pred cceee
Confidence 98774
No 216
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.81 E-value=5.3e-09 Score=102.99 Aligned_cols=57 Identities=37% Similarity=0.415 Sum_probs=44.8
Q ss_pred ccChHHHHHHHHHHHHHhhc----CCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeC
Q 005179 631 VIGQDEAVAAISRAVKRSRV----GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFF 694 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~----gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d 694 (710)
|+||++|+.+-...+++.+- |-..| .++|||||||||||++|||||++ ..-.++-+.
T Consensus 123 ViGqEeAK~kcrli~~yLenPe~Fg~WAP----knVLFyGppGTGKTm~Akalane---~kvp~l~vk 183 (368)
T COG1223 123 VIGQEEAKRKCRLIMEYLENPERFGDWAP----KNVLFYGPPGTGKTMMAKALANE---AKVPLLLVK 183 (368)
T ss_pred hhchHHHHHHHHHHHHHhhChHHhcccCc----ceeEEECCCCccHHHHHHHHhcc---cCCceEEec
Confidence 99999999998888877642 33333 59999999999999999999988 444555544
No 217
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.80 E-value=7.8e-09 Score=101.67 Aligned_cols=61 Identities=25% Similarity=0.342 Sum_probs=42.3
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
+.++||++.+..+.-.++..+. .+.++.++|||||||||||+||+.||+++- .++..+..+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~----r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~---~~~~~~sg~ 84 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK----RGEALDHMLFYGPPGLGKTTLARIIANELG---VNFKITSGP 84 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC----TTS---EEEEESSTTSSHHHHHHHHHHHCT-----EEEEECC
T ss_pred HHccCcHHHHhhhHHHHHHHHh----cCCCcceEEEECCCccchhHHHHHHHhccC---CCeEeccch
Confidence 4599999999998877776653 123456999999999999999999999942 345444443
No 218
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=1.1e-07 Score=100.61 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHcCCCC-CcEEEcCCCChHHHHHHHHHHHHHhcCCCc--cc------------cCceEEEeehhhhhhcc
Q 005179 297 TEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPV--FL------------LSKRIMSLDMGLLMAGA 361 (710)
Q Consensus 297 ~~i~~l~~~L~~~~~~-nvLL~GppG~GKT~la~~la~~l~~~~~p~--~l------------~~~~v~~ld~~~l~~g~ 361 (710)
.....+...+.+.+.. ..||+||+|+||+++|+.+|+.+.+.+... .. ....++.+... .|
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~- 84 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DN- 84 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cC-
Confidence 3556677777765544 466899999999999999999997743111 00 01112222110 11
Q ss_pred ccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChHHH
Q 005179 362 KERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEH 435 (710)
Q Consensus 362 ~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~~~ 435 (710)
+.. -.+.++++.+.+.. ++.-|++||++|.| ....+|.|+..||+ .++.+|.+|+..+
T Consensus 85 ~~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-------------~~~AaNaLLKtLEEPp~~~~fiL~t~~~~- 148 (325)
T PRK06871 85 KDI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERL-------------TEAAANALLKTLEEPRPNTYFLLQADLSA- 148 (325)
T ss_pred CCC--CHHHHHHHHHHHhhccccCCceEEEEechhhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChH-
Confidence 111 12345566555532 34568999999999 56788999999985 4566666666655
Q ss_pred HhhhhccHHHHccccceEecCCCHHHHHHHHHH
Q 005179 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468 (710)
Q Consensus 436 ~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~ 468 (710)
.+-|++++|++.+.+.+|+.++..+.|..
T Consensus 149 ----~llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 149 ----ALLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred ----hCchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 68899999999999999999987777664
No 219
>PRK08116 hypothetical protein; Validated
Probab=98.79 E-value=5.2e-08 Score=101.06 Aligned_cols=130 Identities=17% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccc--cCccHHHHHHHHHHHHHhcCCeEEEEc
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK--ERGELEARVTTLISEIQKSGDVILFID 389 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~--~~g~~e~~l~~~~~~~~~~~~~IL~ID 389 (710)
.+++|+|++|+|||+|+.++++.+... +..++.++...++...+ +.+........+++.+... .+|+||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~--dlLviD 185 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNA--DLLILD 185 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCC--CEEEEe
Confidence 359999999999999999999998653 45677777766543211 1110011122344444433 489999
Q ss_pred cchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccc----cceEecCCC
Q 005179 390 EVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF----QPVLISEPS 458 (710)
Q Consensus 390 Eid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf----~~I~v~~Ps 458 (710)
|++..... ......+.+++.....++. .+|.|||...-.-....+..+.+|+ ..|.+.-++
T Consensus 186 Dlg~e~~t-------~~~~~~l~~iin~r~~~~~-~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 186 DLGAERDT-------EWAREKVYNIIDSRYRKGL-PTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred cccCCCCC-------HHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 99653111 0112334455544444444 4555555432111112467888885 256666665
No 220
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.9e-08 Score=108.12 Aligned_cols=147 Identities=22% Similarity=0.290 Sum_probs=88.3
Q ss_pred CCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------cCceEE----
Q 005179 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL-------------LSKRIM---- 350 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l-------------~~~~v~---- 350 (710)
.|.+++|++...+.+.-. ...+.|+|++||||||||++++.+...+.....+..+ .+++++
T Consensus 177 D~~DV~GQ~~AKrAleiA--AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rP 254 (490)
T COG0606 177 DFKDVKGQEQAKRALEIA--AAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRP 254 (490)
T ss_pred chhhhcCcHHHHHHHHHH--HhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCC
Confidence 456899999766655533 3357899999999999999999876544221111111 001111
Q ss_pred ------Eeehhhhhhccc--cCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC
Q 005179 351 ------SLDMGLLMAGAK--ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG 422 (710)
Q Consensus 351 ------~ld~~~l~~g~~--~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 422 (710)
+....+++.|.. ..| ++....+.||||||+-.+ ...+.+.|+.-|++|
T Consensus 255 Fr~PHHsaS~~aLvGGG~~p~PG-----------eIsLAH~GVLFLDElpef-------------~~~iLe~LR~PLE~g 310 (490)
T COG0606 255 FRAPHHSASLAALVGGGGVPRPG-----------EISLAHNGVLFLDELPEF-------------KRSILEALREPLENG 310 (490)
T ss_pred ccCCCccchHHHHhCCCCCCCCC-----------ceeeecCCEEEeeccchh-------------hHHHHHHHhCccccC
Confidence 111222222211 011 122345679999999777 567899999999876
Q ss_pred C---------------eEEEEccChH-----------------HHHhh-hhccHHHHcccc-ceEecCCCHH
Q 005179 423 E---------------LQCIASTTQD-----------------EHRTQ-FEKDKALARRFQ-PVLISEPSQE 460 (710)
Q Consensus 423 ~---------------v~vI~att~~-----------------~~~~~-~~~d~aL~~Rf~-~I~v~~Ps~~ 460 (710)
+ +++|++||+. ....| -.+...|++||+ .|.++.++..
T Consensus 311 ~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~ 382 (490)
T COG0606 311 KIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAG 382 (490)
T ss_pred cEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHH
Confidence 4 4466776642 11112 245678899998 6777776533
No 221
>PRK12377 putative replication protein; Provisional
Probab=98.77 E-value=1.7e-08 Score=102.95 Aligned_cols=73 Identities=21% Similarity=0.368 Sum_probs=49.1
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcccc---CccHHHHHHHHHHHHHhcCCeEE
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE---RGELEARVTTLISEIQKSGDVIL 386 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~---~g~~e~~l~~~~~~~~~~~~~IL 386 (710)
...+++|+||||||||+|+.++++.+... +..+..+...++...-+. .+.. ...+++.+.. ..+|
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~-------g~~v~~i~~~~l~~~l~~~~~~~~~---~~~~l~~l~~--~dLL 167 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-------GRSVIVVTVPDVMSRLHESYDNGQS---GEKFLQELCK--VDLL 167 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEHHHHHHHHHHHHhccch---HHHHHHHhcC--CCEE
Confidence 34689999999999999999999998643 566677776666532110 1111 2234444433 4599
Q ss_pred EEccchhh
Q 005179 387 FIDEVHTL 394 (710)
Q Consensus 387 ~IDEid~l 394 (710)
+|||++..
T Consensus 168 iIDDlg~~ 175 (248)
T PRK12377 168 VLDEIGIQ 175 (248)
T ss_pred EEcCCCCC
Confidence 99999765
No 222
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=5e-08 Score=103.89 Aligned_cols=152 Identities=17% Similarity=0.183 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCC-Ccc--------------ccCceEEEeehhhhh----
Q 005179 298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV-PVF--------------LLSKRIMSLDMGLLM---- 358 (710)
Q Consensus 298 ~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~-p~~--------------l~~~~v~~ld~~~l~---- 358 (710)
..+++... ..+-+..+||+||+|+||+++|+.+|+.+.+... +.. .....++.+......
T Consensus 9 ~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~ 87 (342)
T PRK06964 9 DWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAP 87 (342)
T ss_pred HHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccccc
Confidence 44555554 3344556789999999999999999999977541 100 001112222111000
Q ss_pred -------------hccc---c-CccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcc
Q 005179 359 -------------AGAK---E-RGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (710)
Q Consensus 359 -------------~g~~---~-~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~ 417 (710)
.|.+ . ..-..+.++.+.+.+.. ++.-|++||++|.| .....|.|+.
T Consensus 88 ~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLK 154 (342)
T PRK06964 88 GAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-------------NVAAANALLK 154 (342)
T ss_pred ccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-------------CHHHHHHHHH
Confidence 0000 0 01112445666655532 34569999999999 5668888888
Q ss_pred cccC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHH
Q 005179 418 SLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468 (710)
Q Consensus 418 ~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~ 468 (710)
.|++ .++++|.+|+..+ .+.|++++|++.|.|++|+.++..+.|..
T Consensus 155 tLEEPp~~t~fiL~t~~~~-----~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 155 TLEEPPPGTVFLLVSARID-----RLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred HhcCCCcCcEEEEEECChh-----hCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 8985 4566777777665 78899999999999999999987777753
No 223
>PRK08181 transposase; Validated
Probab=98.77 E-value=2.5e-08 Score=102.91 Aligned_cols=118 Identities=16% Similarity=0.262 Sum_probs=69.4
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcc---ccCccHHHHHHHHHHHHHhcCCeEE
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---KERGELEARVTTLISEIQKSGDVIL 386 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~---~~~g~~e~~l~~~~~~~~~~~~~IL 386 (710)
.+.|++|+||||||||+|+.+++..+... +..++.+....++..- ...+. +...+..+.. ..+|
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-------g~~v~f~~~~~L~~~l~~a~~~~~----~~~~l~~l~~--~dLL 171 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN-------GWRVLFTRTTDLVQKLQVARRELQ----LESAIAKLDK--FDLL 171 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc-------CCceeeeeHHHHHHHHHHHHhCCc----HHHHHHHHhc--CCEE
Confidence 56789999999999999999999988543 5677777776665321 11122 2233444433 4599
Q ss_pred EEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccC--hHHHHhhhh---ccHHHHccc
Q 005179 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT--QDEHRTQFE---KDKALARRF 449 (710)
Q Consensus 387 ~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att--~~~~~~~~~---~d~aL~~Rf 449 (710)
+|||++.+.... .....+.+++....+++ .+|.++| ..+|...+. +..++.+|+
T Consensus 172 IIDDlg~~~~~~-------~~~~~Lf~lin~R~~~~--s~IiTSN~~~~~w~~~~~D~~~a~aildRL 230 (269)
T PRK08181 172 ILDDLAYVTKDQ-------AETSVLFELISARYERR--SILITANQPFGEWNRVFPDPAMTLAAVDRL 230 (269)
T ss_pred EEeccccccCCH-------HHHHHHHHHHHHHHhCC--CEEEEcCCCHHHHHHhcCCccchhhHHHhh
Confidence 999998873221 11234455555444443 3444444 444544432 223455555
No 224
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.77 E-value=8e-09 Score=92.60 Aligned_cols=107 Identities=24% Similarity=0.343 Sum_probs=57.3
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh------hhhhhcccc----CccHHHHHHHHHHHHHhcC
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM------GLLMAGAKE----RGELEARVTTLISEIQKSG 382 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~------~~l~~g~~~----~g~~e~~l~~~~~~~~~~~ 382 (710)
|+||.|+||+|||++|+++|+.+ +..+..+.+ +++. |... .++++-.-.-++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~----------~~~f~RIq~tpdllPsDi~-G~~v~~~~~~~f~~~~GPif------- 62 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL----------GLSFKRIQFTPDLLPSDIL-GFPVYDQETGEFEFRPGPIF------- 62 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT----------T--EEEEE--TT--HHHHH-EEEEEETTTTEEEEEE-TT--------
T ss_pred CEeeECCCccHHHHHHHHHHHHc----------CCceeEEEecCCCCcccce-eeeeeccCCCeeEeecChhh-------
Confidence 68999999999999999999987 333333322 1221 1110 111110001111
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------CeEEEEccChHHHHhhhhccHHHHccc
Q 005179 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIASTTQDEHRTQFEKDKALARRF 449 (710)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~att~~~~~~~~~~d~aL~~Rf 449 (710)
..|+++|||++. ....++.|.+.|+++ .+.||+|.|+.++...+.+..++.+||
T Consensus 63 ~~ill~DEiNra-------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 63 TNILLADEINRA-------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp SSEEEEETGGGS--------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred hceeeecccccC-------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 248999999998 445677777777643 366899999988888899999999998
Q ss_pred c
Q 005179 450 Q 450 (710)
Q Consensus 450 ~ 450 (710)
-
T Consensus 130 ~ 130 (131)
T PF07726_consen 130 M 130 (131)
T ss_dssp S
T ss_pred c
Confidence 3
No 225
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.77 E-value=2.6e-08 Score=111.46 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=89.5
Q ss_pred CCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe---------------
Q 005179 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL--------------- 352 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l--------------- 352 (710)
.|++++|++..++.+...+ ..+.+++|+||||+|||++++.++..+........+....+..+
T Consensus 190 d~~dv~Gq~~~~~al~~aa--~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf 267 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA--AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPF 267 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc--cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCc
Confidence 4567899987766555433 34578999999999999999999875532111111111111111
Q ss_pred ---e----hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC---
Q 005179 353 ---D----MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--- 422 (710)
Q Consensus 353 ---d----~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--- 422 (710)
+ ...++.|.. ..+ -..+....+.+|||||++.+ ...+++.|.+.|+.+
T Consensus 268 ~~p~~s~s~~~~~ggg~-----~~~----pG~i~lA~~GvLfLDEi~e~-------------~~~~~~~L~~~LE~~~v~ 325 (499)
T TIGR00368 268 RSPHHSASKPALVGGGP-----IPL----PGEISLAHNGVLFLDELPEF-------------KRSVLDALREPIEDGSIS 325 (499)
T ss_pred cccccccchhhhhCCcc-----ccc----hhhhhccCCCeEecCChhhC-------------CHHHHHHHHHHHHcCcEE
Confidence 0 001111100 000 01223345679999999998 556777777777644
Q ss_pred ------------CeEEEEccChHH---H--------------Hh-hhhccHHHHcccc-ceEecCCCHHH
Q 005179 423 ------------ELQCIASTTQDE---H--------------RT-QFEKDKALARRFQ-PVLISEPSQED 461 (710)
Q Consensus 423 ------------~v~vI~att~~~---~--------------~~-~~~~d~aL~~Rf~-~I~v~~Ps~~~ 461 (710)
++++|+++|+.+ | .. ...+...|++||+ .+.+++++.++
T Consensus 326 i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 326 ISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred EEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 467899988642 1 11 1247889999998 67787766543
No 226
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.2e-08 Score=105.80 Aligned_cols=86 Identities=28% Similarity=0.260 Sum_probs=52.3
Q ss_pred HHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHH
Q 005179 596 DIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTEL 675 (710)
Q Consensus 596 di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~l 675 (710)
++.+++++-.--.-.++.|+|+-++.+.++.|++ +|..++.+.. .++.-.||..|+|++||||||||+|
T Consensus 193 ~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~E----------AVvlPi~mPe-~F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 193 DLVEALERDILQRNPNIKWDDIAGLHEAKKLLKE----------AVVLPIWMPE-FFKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred HHHHHHHHHHhccCCCcChHhhcchHHHHHHHHH----------HHhhhhhhHH-HHhhcccccceeeeeCCCCCcHHHH
Confidence 6777775532222226888886665555554442 2222222222 1222346678999999999999999
Q ss_pred HHHHHHHHcCCCCcceeeCCCC
Q 005179 676 AKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 676 AkaLA~~lfg~~~~li~~d~se 697 (710)
|||||.+ .| -+.||.|.
T Consensus 262 AKAvATE-c~----tTFFNVSs 278 (491)
T KOG0738|consen 262 AKAVATE-CG----TTFFNVSS 278 (491)
T ss_pred HHHHHHh-hc----CeEEEech
Confidence 9999988 22 45555443
No 227
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.76 E-value=9e-09 Score=104.11 Aligned_cols=60 Identities=30% Similarity=0.419 Sum_probs=51.4
Q ss_pred ccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 612 ~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
.+|.+..+-..+++ +.||+.++..+.+++.+ +.+ -++|||||||||||..|+++|++||+
T Consensus 24 ~swteKYrPkt~de-----~~gQe~vV~~L~~a~~~-~~l--------p~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDE-----LAGQEHVVQVLKNALLR-RIL--------PHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred cchHHHhCCCcHHh-----hcchHHHHHHHHHHHhh-cCC--------ceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 45666666667777 99999999999999988 422 28999999999999999999999999
No 228
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.76 E-value=4.7e-08 Score=109.62 Aligned_cols=184 Identities=22% Similarity=0.313 Sum_probs=111.8
Q ss_pred CCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh------
Q 005179 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~------ 359 (710)
.+..++|....+.++.+.+.. ....+++|+|++||||+++|+++....... +.+++.+++..+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~v~v~c~~~~~~~~~~~ 209 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRK-------DKRFVAINCAAIPENLLESE 209 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcC-------CCCeEEEECCCCChHHHHHH
Confidence 345688888888777766543 345789999999999999999998765322 34566666654321
Q ss_pred --ccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------Ce
Q 005179 360 --GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (710)
Q Consensus 360 --g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v 424 (710)
|. ..|.+..........+....+.+|||||++.| ....+..|..+++.+ ++
T Consensus 210 lfg~-~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-------------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ 275 (445)
T TIGR02915 210 LFGY-EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL-------------PLNLQAKLLRFLQERVIERLGGREEIPVDV 275 (445)
T ss_pred hcCC-CCCCcCCCccCCCCceeECCCCEEEEechhhC-------------CHHHHHHHHHHHhhCeEEeCCCCceeeece
Confidence 10 00100000000011122345678999999999 455666666666533 46
Q ss_pred EEEEccChHHHHh--hhhccHHHHccccceEecCCCHHHHH----HHHHHHHHHHHhhcC---CCCCHHHHHHHHHH
Q 005179 425 QCIASTTQDEHRT--QFEKDKALARRFQPVLISEPSQEDAV----RILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (710)
Q Consensus 425 ~vI~att~~~~~~--~~~~d~aL~~Rf~~I~v~~Ps~~~~~----~IL~~l~~~~~~~~~---~~i~~~~l~~l~~l 492 (710)
++|++|+.+-... .-...+.|..||..+.|..|+..+|. .+++.++.++...++ ..+++++++.+..+
T Consensus 276 rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (445)
T TIGR02915 276 RIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAH 352 (445)
T ss_pred EEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC
Confidence 8888887653111 12345667788876777777655444 455556665554433 46899988877544
No 229
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.75 E-value=1.5e-07 Score=94.28 Aligned_cols=110 Identities=18% Similarity=0.188 Sum_probs=78.6
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-CeEEEEccChH--------HHHhhhhccHHHHccccceE
Q 005179 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-ELQCIASTTQD--------EHRTQFEKDKALARRFQPVL 453 (710)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~att~~--------~~~~~~~~d~aL~~Rf~~I~ 453 (710)
|.||||||+|.| ..+....|...++.. .-++|.++|.. ....-+.+.+.|.+|+-.|.
T Consensus 297 PGVLFIDEVhML-------------DiEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iir 363 (456)
T KOG1942|consen 297 PGVLFIDEVHML-------------DIECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIR 363 (456)
T ss_pred CcceEeeehhhh-------------hhHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEe
Confidence 789999999999 778888888888754 23455554432 11123457799999998899
Q ss_pred ecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHH
Q 005179 454 ISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 454 v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~ 514 (710)
..+++.++..+|++...+ ..++.++++++..++.+..+ ..-+.++.|+.-+.
T Consensus 364 t~~y~~~e~r~Ii~~Ra~----~E~l~~~e~a~~~l~~~gt~-----tsLRy~vqLl~p~~ 415 (456)
T KOG1942|consen 364 TLPYDEEEIRQIIKIRAQ----VEGLQVEEEALDLLAEIGTS-----TSLRYAVQLLTPAS 415 (456)
T ss_pred eccCCHHHHHHHHHHHHh----hhcceecHHHHHHHHhhccc-----hhHHHHHHhcCHHH
Confidence 999999999999987665 44789999999988876432 11234566655443
No 230
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=7.3e-09 Score=107.46 Aligned_cols=78 Identities=28% Similarity=0.299 Sum_probs=54.6
Q ss_pred hccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcc
Q 005179 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIH 690 (710)
Q Consensus 611 ~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~l 690 (710)
.++|+|++++..+++.|.+.|+=+ +..+-.+++.++ -+|..|+|||||||||||++|||+|++ .+.++
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilP------lr~pelF~~g~L---l~p~kGiLL~GPpG~GKTmlAKA~Ake---aga~f 155 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILP------LRRPELFAKGKL---LRPPKGILLYGPPGTGKTMLAKAIAKE---AGANF 155 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhc------ccchhhhccccc---ccCCccceecCCCCchHHHHHHHHHHH---cCCCc
Confidence 467888777777777666444322 111112223333 335569999999999999999999999 77789
Q ss_pred eeeCCCCCCC
Q 005179 691 YLFFPSPFNS 700 (710)
Q Consensus 691 i~~d~se~~~ 700 (710)
|-+.||...+
T Consensus 156 Inv~~s~lt~ 165 (386)
T KOG0737|consen 156 INVSVSNLTS 165 (386)
T ss_pred ceeeccccch
Confidence 9999997654
No 231
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.75 E-value=1.8e-08 Score=109.63 Aligned_cols=76 Identities=29% Similarity=0.317 Sum_probs=57.5
Q ss_pred HHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCC----CC-----CCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcc
Q 005179 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKD----PN-----RPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIH 690 (710)
Q Consensus 620 l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~----p~-----rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~l 690 (710)
..++++.|.++|+||++|++.++.++.....+++. +. .+.+++||+||||||||++|++||+.+ ...+
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~pf 144 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVPF 144 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCCe
Confidence 35788899999999999999999988544333322 11 113689999999999999999999886 2356
Q ss_pred eeeCCCCC
Q 005179 691 YLFFPSPF 698 (710)
Q Consensus 691 i~~d~se~ 698 (710)
+.+|++.+
T Consensus 145 ~~~da~~L 152 (413)
T TIGR00382 145 AIADATTL 152 (413)
T ss_pred EEechhhc
Confidence 66666654
No 232
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=9.7e-09 Score=116.77 Aligned_cols=62 Identities=35% Similarity=0.452 Sum_probs=53.4
Q ss_pred ccChHHHHHHHHHHH-------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 631 VIGQDEAVAAISRAV-------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i-------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
|.|.++|++.|.+.| +|.+.|.+.| .|+||+||||||||+||||+|.+ .+-+++.+..|||-
T Consensus 313 VAG~deAK~El~E~V~fLKNP~~Y~~lGAKiP----kGvLL~GPPGTGKTLLAKAiAGE---AgVPF~svSGSEFv 381 (774)
T KOG0731|consen 313 VAGVDEAKEELMEFVKFLKNPEQYQELGAKIP----KGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSVSGSEFV 381 (774)
T ss_pred ccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCc----CceEEECCCCCcHHHHHHHHhcc---cCCceeeechHHHH
Confidence 777777777777666 6778888877 79999999999999999999998 88899999999983
No 233
>PRK06526 transposase; Provisional
Probab=98.72 E-value=2.3e-08 Score=102.65 Aligned_cols=105 Identities=28% Similarity=0.396 Sum_probs=60.4
Q ss_pred CCcchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccC
Q 005179 267 RTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS 346 (710)
Q Consensus 267 ~~~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~ 346 (710)
+|...+|+.|.++.... + ....+..+...-....+.|++|+||||||||+++.+|+..+... +
T Consensus 64 ~p~~~~le~fd~~~~~~---------~-~~~~~~~l~~~~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~-------g 126 (254)
T PRK06526 64 FPARKSLEEFDFDHQRS---------L-KRDTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQA-------G 126 (254)
T ss_pred CCCCCChhhccCccCCC---------c-chHHHHHHhcCchhhcCceEEEEeCCCCchHHHHHHHHHHHHHC-------C
Confidence 44456788776553211 1 11233333322122356789999999999999999999988653 4
Q ss_pred ceEEEeehhhhhhc---cccCccHHHHHHHHHHHHHhcCCeEEEEccchhh
Q 005179 347 KRIMSLDMGLLMAG---AKERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (710)
Q Consensus 347 ~~v~~ld~~~l~~g---~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l 394 (710)
..+.......++.. ....+... ..+..+. ...+|+|||++.+
T Consensus 127 ~~v~f~t~~~l~~~l~~~~~~~~~~----~~l~~l~--~~dlLIIDD~g~~ 171 (254)
T PRK06526 127 HRVLFATAAQWVARLAAAHHAGRLQ----AELVKLG--RYPLLIVDEVGYI 171 (254)
T ss_pred CchhhhhHHHHHHHHHHHHhcCcHH----HHHHHhc--cCCEEEEcccccC
Confidence 45555555444321 11122222 2233332 3469999999987
No 234
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.72 E-value=1.6e-07 Score=99.54 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=54.2
Q ss_pred hHhHHHhhcccccCC-------------CeEEEEccChHHHHhh--hhccHHHHccccceEecCCC-HHHHHHHHHHHHH
Q 005179 408 GLDISNLLKPSLGRG-------------ELQCIASTTQDEHRTQ--FEKDKALARRFQPVLISEPS-QEDAVRILLGLRE 471 (710)
Q Consensus 408 ~~~~~~~L~~~l~~~-------------~v~vI~att~~~~~~~--~~~d~aL~~Rf~~I~v~~Ps-~~~~~~IL~~l~~ 471 (710)
..++.+.|+..++++ +.++|+++|+.+|... .....+|.+||..|.++.|. ..+-.+|.+..+.
T Consensus 249 ~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~~E~~Iy~k~~~ 328 (361)
T smart00763 249 DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCLRVSEEAQIYEKLLR 328 (361)
T ss_pred CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcCCHHHHHHHHHHHhc
Confidence 455666666555533 2457899999998765 34579999999999998874 6666777776655
Q ss_pred HHHhhcCCCCCHHHHHHHH
Q 005179 472 KYEAHHNCKFTLEAINAAV 490 (710)
Q Consensus 472 ~~~~~~~~~i~~~~l~~l~ 490 (710)
.-. ..+..+.+.+++.++
T Consensus 329 ~s~-~~~~~~aP~~le~aa 346 (361)
T smart00763 329 NSD-LTEAHIAPHTLEMAA 346 (361)
T ss_pred cCc-CcccccCchHHHHHH
Confidence 221 123556666655544
No 235
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=1.6e-07 Score=99.11 Aligned_cols=148 Identities=15% Similarity=0.124 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHcCCCC-CcEEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------cCceEEEeehhhhhhccc
Q 005179 297 TEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVFL-------------LSKRIMSLDMGLLMAGAK 362 (710)
Q Consensus 297 ~~i~~l~~~L~~~~~~-nvLL~GppG~GKT~la~~la~~l~~~~~p~~l-------------~~~~v~~ld~~~l~~g~~ 362 (710)
...+++...+.+.+.. .+||+||.|+||+++|+.+|+.+.+.+.+... ....++.+.... .| +
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~-~ 86 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EG-K 86 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CC-C
Confidence 3556677766665544 47899999999999999999998775422100 011222222110 00 1
Q ss_pred cCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChHHHH
Q 005179 363 ERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHR 436 (710)
Q Consensus 363 ~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~~~~ 436 (710)
.. ..+.++.+.+.+.. ++.-|++||++|.| ....+|.|+..||+ .+..+|..|+..+
T Consensus 87 ~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~-- 149 (319)
T PRK06090 87 SI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-------------NESASNALLKTLEEPAPNCLFLLVTHNQK-- 149 (319)
T ss_pred cC--CHHHHHHHHHHHhhCcccCCceEEEecchhhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChh--
Confidence 11 12334555544432 34569999999999 56788999988986 3566666666654
Q ss_pred hhhhccHHHHccccceEecCCCHHHHHHHHH
Q 005179 437 TQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (710)
Q Consensus 437 ~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~ 467 (710)
.+-|++++|++.+.|++|+.++..+.|.
T Consensus 150 ---~lLpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 150 ---RLLPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred ---hChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 6789999999999999999998777665
No 236
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=1.2e-06 Score=93.57 Aligned_cols=205 Identities=17% Similarity=0.154 Sum_probs=121.2
Q ss_pred CCcccCHHHHHHHHHHH----HcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh------
Q 005179 290 DPVIGRETEIQRIIQIL----CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L----~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~------ 359 (710)
..+.||+.++..+.+++ .......+.+.|-||+|||.+...+....... .....++++++..+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~-----~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKS-----SKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhh-----cccceeEEEeeccccchHHHHH
Confidence 45899999998887764 45677889999999999999998877665332 1222344555443221
Q ss_pred --------ccccCccHHHHHHHHHHHHHhcC-CeEEEEccchhhhhCCCCCCCCCCChHhHHH-hhcccccCCCeEEEEc
Q 005179 360 --------GAKERGELEARVTTLISEIQKSG-DVILFIDEVHTLIGSGTVGRGNKGTGLDISN-LLKPSLGRGELQCIAS 429 (710)
Q Consensus 360 --------g~~~~g~~e~~l~~~~~~~~~~~-~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~-~L~~~l~~~~v~vI~a 429 (710)
+....+...+.+..+-....... ..|+++||+|.|...+.. .+.. +..+.+-...+++||.
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~---------vLy~lFewp~lp~sr~iLiGi 295 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT---------VLYTLFEWPKLPNSRIILIGI 295 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc---------eeeeehhcccCCcceeeeeee
Confidence 11111222222233333333333 789999999999633211 1111 1134455677888888
Q ss_pred cChHHHHhhhhccHHHHcccc----ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcch
Q 005179 430 TTQDEHRTQFEKDKALARRFQ----PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~Rf~----~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ 505 (710)
.|.-+... ..-+.|..|.. .+.|++++.+|..+||+..+.... -..+-+-+++.++.....--+ --++
T Consensus 296 ANslDlTd--R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~---t~~~~~~Aie~~ArKvaa~SG---DlRk 367 (529)
T KOG2227|consen 296 ANSLDLTD--RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES---TSIFLNAAIELCARKVAAPSG---DLRK 367 (529)
T ss_pred hhhhhHHH--HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc---ccccchHHHHHHHHHhccCch---hHHH
Confidence 88755222 22355555543 689999999999999997665432 123333445554444333222 2357
Q ss_pred HHHHHHHHHhh
Q 005179 506 AIDLVDEAGSR 516 (710)
Q Consensus 506 ai~ll~~a~~~ 516 (710)
+++++..|...
T Consensus 368 aLdv~R~aiEI 378 (529)
T KOG2227|consen 368 ALDVCRRAIEI 378 (529)
T ss_pred HHHHHHHHHHH
Confidence 77777777643
No 237
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.70 E-value=8.5e-09 Score=96.09 Aligned_cols=130 Identities=22% Similarity=0.334 Sum_probs=78.8
Q ss_pred ccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHH
Q 005179 293 IGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370 (710)
Q Consensus 293 iGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~ 370 (710)
||....++++.+.+.+ ....+++|+|++||||+++|+.|...-.... ..++.+++..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~-------~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRAN-------GPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCC-------S-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccC-------CCeEEechhhCc------------
Confidence 5677777777776554 5667899999999999999999987653221 122223332211
Q ss_pred HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc---CCCeEEEEccChHHH--HhhhhccHHH
Q 005179 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQCIASTTQDEH--RTQFEKDKAL 445 (710)
Q Consensus 371 l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~att~~~~--~~~~~~d~aL 445 (710)
.++++. ..+..|||+|++.| +.+.+..|..++. +.++++|++++.+-. ...-.+++.|
T Consensus 62 -~~~l~~---a~~gtL~l~~i~~L-------------~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L 124 (138)
T PF14532_consen 62 -AELLEQ---AKGGTLYLKNIDRL-------------SPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDL 124 (138)
T ss_dssp -HHHHHH---CTTSEEEEECGCCS--------------HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHH
T ss_pred -HHHHHH---cCCCEEEECChHHC-------------CHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHH
Confidence 223332 35679999999999 4455555555554 456788887665421 1223467888
Q ss_pred HccccceEecCCC
Q 005179 446 ARRFQPVLISEPS 458 (710)
Q Consensus 446 ~~Rf~~I~v~~Ps 458 (710)
..||..+.+..|+
T Consensus 125 ~~~l~~~~i~lPp 137 (138)
T PF14532_consen 125 YYRLSQLEIHLPP 137 (138)
T ss_dssp HHHCSTCEEEE--
T ss_pred HHHhCCCEEeCCC
Confidence 8899755555553
No 238
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.70 E-value=2.4e-08 Score=76.48 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=46.4
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCCCCHHHHHHHHHHHhh
Q 005179 96 SQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWH 146 (710)
Q Consensus 96 A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~gv~~~~l~~~~~~~~~ 146 (710)
|+++|++++|.+|++||||+||+.++++ .++|..+|+|++.+++++.+.++
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 7899999999999999999999999877 88999999999999999987754
No 239
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.69 E-value=9.2e-08 Score=88.05 Aligned_cols=126 Identities=22% Similarity=0.305 Sum_probs=72.7
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh------------ccccCccHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------------GAKERGELEARVTTLISEI 378 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~------------g~~~~g~~e~~l~~~~~~~ 378 (710)
+.+++|+||||||||++++.++..+.... ..++.++...... ..............++..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999884321 2355554433211 1112223344556667777
Q ss_pred HhcCCeEEEEccchhhhhCCCCCCCCCCChHhHH-----HhhcccccCCCeEEEEccChHHHHhhhhccHHHHcccc-ce
Q 005179 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDIS-----NLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ-PV 452 (710)
Q Consensus 379 ~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~-----~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I 452 (710)
....+.+++|||++.+...... .... .............+|++++.. ....+..+..|++ .+
T Consensus 75 ~~~~~~viiiDei~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~ 142 (148)
T smart00382 75 RKLKPDVLILDEITSLLDAEQE--------ALLLLLEELRLLLLLKSEKNLTVILTTNDE----KDLGPALLRRRFDRRI 142 (148)
T ss_pred HhcCCCEEEEECCcccCCHHHH--------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCC----ccCchhhhhhccceEE
Confidence 7666689999999998432110 0000 011222334567788888851 1234455555665 44
Q ss_pred Eec
Q 005179 453 LIS 455 (710)
Q Consensus 453 ~v~ 455 (710)
.+.
T Consensus 143 ~~~ 145 (148)
T smart00382 143 VLL 145 (148)
T ss_pred Eec
Confidence 443
No 240
>CHL00181 cbbX CbbX; Provisional
Probab=98.69 E-value=3.7e-08 Score=103.10 Aligned_cols=66 Identities=24% Similarity=0.386 Sum_probs=52.4
Q ss_pred HHHHHHHHhhCcccChHHHHHHHHHHH-------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 619 LLVGLEEQLKKRVIGQDEAVAAISRAV-------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 619 ~l~~l~~~L~~~v~Gq~~a~~~i~~~i-------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
.+.++.+.|.+.++|++++++.|...+ .+.+.|+..|..+ -++||+||||||||++|+++|+.++.
T Consensus 13 ~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~-~~ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 13 QIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPG-LHMSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred CHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456677888888999999999887654 2345687766443 37999999999999999999999875
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.68 E-value=2.9e-08 Score=96.47 Aligned_cols=84 Identities=20% Similarity=0.365 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcc---ccCccHHHHHHHH
Q 005179 298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---KERGELEARVTTL 374 (710)
Q Consensus 298 ~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~---~~~g~~e~~l~~~ 374 (710)
.+..+...-....+.|++|+|++|||||+||.++++++... +..+..++..+++..- ...+..+ ..
T Consensus 34 ~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-------g~~v~f~~~~~L~~~l~~~~~~~~~~----~~ 102 (178)
T PF01695_consen 34 QIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRK-------GYSVLFITASDLLDELKQSRSDGSYE----EL 102 (178)
T ss_dssp HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEEEHHHHHHHHHCCHCCTTHC----HH
T ss_pred HHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccC-------CcceeEeecCceeccccccccccchh----hh
Confidence 44444433333467899999999999999999999988653 6778888887776322 1222332 33
Q ss_pred HHHHHhcCCeEEEEccchhh
Q 005179 375 ISEIQKSGDVILFIDEVHTL 394 (710)
Q Consensus 375 ~~~~~~~~~~IL~IDEid~l 394 (710)
++.+... .+|+|||+...
T Consensus 103 ~~~l~~~--dlLilDDlG~~ 120 (178)
T PF01695_consen 103 LKRLKRV--DLLILDDLGYE 120 (178)
T ss_dssp HHHHHTS--SCEEEETCTSS
T ss_pred cCccccc--cEeccccccee
Confidence 4444443 48999999654
No 242
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.67 E-value=4e-08 Score=110.95 Aligned_cols=183 Identities=23% Similarity=0.341 Sum_probs=110.6
Q ss_pred CCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh-------
Q 005179 289 IDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------- 359 (710)
Q Consensus 289 l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~------- 359 (710)
+..++|....+.++.+.+.+ ....+++|+|++|||||++|+++....... +.+++.+||..+..
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~i~i~c~~~~~~~~~~~l 209 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA-------KAPFIALNMAAIPKDLIESEL 209 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCC-------CCCeEeeeCCCCCHHHHHHHh
Confidence 45689988888777766543 345679999999999999999998865322 44566666654421
Q ss_pred -ccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------CeE
Q 005179 360 -GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQ 425 (710)
Q Consensus 360 -g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 425 (710)
|. ..|.+..........+....+..|||||++.| ..+.+..|..+++.+ +++
T Consensus 210 fg~-~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 275 (469)
T PRK10923 210 FGH-EKGAFTGANTIRQGRFEQADGGTLFLDEIGDM-------------PLDVQTRLLRVLADGQFYRVGGYAPVKVDVR 275 (469)
T ss_pred cCC-CCCCCCCCCcCCCCCeeECCCCEEEEeccccC-------------CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEE
Confidence 10 00000000000000112334568999999999 455666666666543 357
Q ss_pred EEEccChHHHH--hhhhccHHHHccccceEecCCCH----HHHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHH
Q 005179 426 CIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (710)
Q Consensus 426 vI~att~~~~~--~~~~~d~aL~~Rf~~I~v~~Ps~----~~~~~IL~~l~~~~~~~~~---~~i~~~~l~~l~~l 492 (710)
+|++|+.+-.. ..-...+.|..||..+.+..|+. ++...++..++.++...++ ..+++++++.+..+
T Consensus 276 ii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 351 (469)
T PRK10923 276 IIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 (469)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 88887764311 11124577888997666666663 4555566666666554443 25788888776543
No 243
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.67 E-value=4.2e-08 Score=101.80 Aligned_cols=67 Identities=28% Similarity=0.350 Sum_probs=49.2
Q ss_pred ccChHHHHHHHHHHH-------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC----CCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAV-------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS----VRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i-------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~----~~~li~~d~se~ 698 (710)
++|++++++.|...+ .+.+.|+..+.++ .++||+||||||||++|+++|+.++.. ...++.++.+++
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQV-LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCc-ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 889999998887543 3345677766554 489999999999999999999998642 234555555444
No 244
>PF13173 AAA_14: AAA domain
Probab=98.62 E-value=8.2e-08 Score=88.23 Aligned_cols=123 Identities=23% Similarity=0.302 Sum_probs=74.9
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccc
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEi 391 (710)
..++|+||.||||||+++.+++.+. ....++.+++.+....... ... +.+.+.+....++.+|||||+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~i~iDEi 70 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRRLA--DPD--LLEYFLELIKPGKKYIFIDEI 70 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHHHh--hhh--hHHHHHHhhccCCcEEEEehh
Confidence 4578999999999999999998873 1355666665544321100 000 222222222235679999999
Q ss_pred hhhhhCCCCCCCCCCChHhHHHhhcccccCC-CeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHH
Q 005179 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQED 461 (710)
Q Consensus 392 d~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~ 461 (710)
+.+ . +....++.+...+ +..+|.|++..... ..+....+..|...+.+.|++..|
T Consensus 71 q~~-----------~---~~~~~lk~l~d~~~~~~ii~tgS~~~~l-~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 71 QYL-----------P---DWEDALKFLVDNGPNIKIILTGSSSSLL-SKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhh-----------c---cHHHHHHHHHHhccCceEEEEccchHHH-hhcccccCCCeEEEEEECCCCHHH
Confidence 998 1 2344555555544 55666655544311 113456677788889999988765
No 245
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3.7e-08 Score=98.85 Aligned_cols=58 Identities=29% Similarity=0.431 Sum_probs=41.4
Q ss_pred hhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHH----HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 005179 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAV----KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 610 ~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i----~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
.++.|++.. |.+.|++++..++ ++...+ ....+|..++||||||||||+.||||+|.+
T Consensus 128 PNVkWsDVA--------------GLE~AKeALKEAVILPIKFPqlF-tGkR~PwrgiLLyGPPGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 128 PNVKWSDVA--------------GLEGAKEALKEAVILPIKFPQLF-TGKRKPWRGILLYGPPGTGKSYLAKAVATE 189 (439)
T ss_pred CCCchhhhc--------------cchhHHHHHHhheeecccchhhh-cCCCCcceeEEEeCCCCCcHHHHHHHHHhh
Confidence 467788754 4455555555444 444432 233567889999999999999999999988
No 246
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.62 E-value=1.2e-07 Score=96.58 Aligned_cols=72 Identities=21% Similarity=0.396 Sum_probs=49.3
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccH---HHHHHHHHHHHHhcCCeEEEE
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGEL---EARVTTLISEIQKSGDVILFI 388 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~---e~~l~~~~~~~~~~~~~IL~I 388 (710)
.+++|+|+||||||+|+.+++..+... +..++.++...+...-+ +.+ ......+++.+.. ..+|+|
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~-------g~~v~~it~~~l~~~l~--~~~~~~~~~~~~~l~~l~~--~dlLvI 168 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR-------GKSVLIITVADIMSAMK--DTFSNSETSEEQLLNDLSN--VDLLVI 168 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEHHHHHHHHH--HHHhhccccHHHHHHHhcc--CCEEEE
Confidence 579999999999999999999998553 56777777777653211 111 0112334444443 459999
Q ss_pred ccchhh
Q 005179 389 DEVHTL 394 (710)
Q Consensus 389 DEid~l 394 (710)
||++..
T Consensus 169 DDig~~ 174 (244)
T PRK07952 169 DEIGVQ 174 (244)
T ss_pred eCCCCC
Confidence 999876
No 247
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.62 E-value=3.3e-07 Score=102.16 Aligned_cols=149 Identities=21% Similarity=0.286 Sum_probs=89.8
Q ss_pred CCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe---------------
Q 005179 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL--------------- 352 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l--------------- 352 (710)
.|..++|+...++.+. +....+.+++|+||||+|||++++.++..+........+-...++++
T Consensus 189 d~~~v~Gq~~~~~al~--laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPf 266 (506)
T PRK09862 189 DLSDVIGQEQGKRGLE--ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPF 266 (506)
T ss_pred CeEEEECcHHHHhhhh--eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCc
Confidence 4556788876665543 23345678999999999999999999866532111111111111111
Q ss_pred -------ehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC---
Q 005179 353 -------DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--- 422 (710)
Q Consensus 353 -------d~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--- 422 (710)
....++.|... . --..+....+.+|||||++.+ ....++.|.+.|+.+
T Consensus 267 r~ph~~~s~~~l~GGg~~-------~--~pG~l~~A~gGvLfLDEi~e~-------------~~~~~~~L~~~LE~g~v~ 324 (506)
T PRK09862 267 RSPHHSASLTAMVGGGAI-------P--GPGEISLAHNGVLFLDELPEF-------------ERRTLDALREPIESGQIH 324 (506)
T ss_pred cCCCccchHHHHhCCCce-------e--hhhHhhhccCCEEecCCchhC-------------CHHHHHHHHHHHHcCcEE
Confidence 11112211100 0 001234455779999999887 556777777766544
Q ss_pred ------------CeEEEEccChHHHHh---------------h-hhccHHHHcccc-ceEecCCCHH
Q 005179 423 ------------ELQCIASTTQDEHRT---------------Q-FEKDKALARRFQ-PVLISEPSQE 460 (710)
Q Consensus 423 ------------~v~vI~att~~~~~~---------------~-~~~d~aL~~Rf~-~I~v~~Ps~~ 460 (710)
++++|+++|+.+... | -.++..+.+||+ .|.+++|+.+
T Consensus 325 I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 325 LSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 367899998764111 1 246789999998 7888888655
No 248
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.61 E-value=1.6e-07 Score=97.51 Aligned_cols=148 Identities=18% Similarity=0.284 Sum_probs=88.3
Q ss_pred HHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHH---
Q 005179 302 IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI--- 378 (710)
Q Consensus 302 l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~--- 378 (710)
+++.+.. .+.++||+||+|||||++++.+.+.+... ..-+..+.++.... ...+..+++..
T Consensus 25 ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k 88 (272)
T PF12775_consen 25 LLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQTT--------SNQLQKIIESKLEK 88 (272)
T ss_dssp HHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTHH--------HHHHHHCCCTTECE
T ss_pred HHHHHHH-cCCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCCC--------HHHHHHHHhhcEEc
Confidence 4444443 46789999999999999999876554211 11233333332211 11122222111
Q ss_pred --------HhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--------------CeEEEEccChHHHH
Q 005179 379 --------QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------------ELQCIASTTQDEHR 436 (710)
Q Consensus 379 --------~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~att~~~~~ 436 (710)
..++..|+||||++.-... ..+.....++|+++++.+ ++.+|+++++..
T Consensus 89 ~~~~~~gP~~~k~lv~fiDDlN~p~~d-------~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~-- 159 (272)
T PF12775_consen 89 RRGRVYGPPGGKKLVLFIDDLNMPQPD-------KYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG-- 159 (272)
T ss_dssp CTTEEEEEESSSEEEEEEETTT-S----------TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--
T ss_pred CCCCCCCCCCCcEEEEEecccCCCCCC-------CCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--
Confidence 0134679999999877432 233445677888777642 567889888743
Q ss_pred hhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHH
Q 005179 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE 474 (710)
Q Consensus 437 ~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~ 474 (710)
+...+++.|.|.|..+.++.|+.+....|+..++..+.
T Consensus 160 Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 160 GRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp T--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHT
T ss_pred CCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhc
Confidence 33457899999999999999999999999999887653
No 249
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.60 E-value=9.1e-07 Score=101.54 Aligned_cols=123 Identities=21% Similarity=0.266 Sum_probs=77.4
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-----------------------CeEEEEccChHHHHhh
Q 005179 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------------------ELQCIASTTQDEHRTQ 438 (710)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~vI~att~~~~~~~ 438 (710)
.+.+|||||++.| ....+..|+..|+.+ ++++|++++++. .
T Consensus 226 nGGtL~LDei~~L-------------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l---l 289 (637)
T PRK13765 226 HKGVLFIDEINTL-------------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA---L 289 (637)
T ss_pred CCcEEEEeChHhC-------------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH---H
Confidence 3467788888777 334555565555322 457888888854 3
Q ss_pred hhccHHHHccccc----eEecC--C-CHHHHHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHhhhhhcCCC---C-cchH
Q 005179 439 FEKDKALARRFQP----VLISE--P-SQEDAVRILLGLREKYEAH-HNCKFTLEAINAAVHLSARYISDRY---L-PDKA 506 (710)
Q Consensus 439 ~~~d~aL~~Rf~~----I~v~~--P-s~~~~~~IL~~l~~~~~~~-~~~~i~~~~l~~l~~ls~~~i~~r~---~-p~~a 506 (710)
..+++.|..||.. +.+.. + +.+.+..+++.+.+....+ .-..++++++..+++.+.|....+. + ..+.
T Consensus 290 ~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l 369 (637)
T PRK13765 290 ENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDL 369 (637)
T ss_pred HhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHH
Confidence 3568999999852 44432 1 2455555555444444332 2347999999999999988877655 2 3466
Q ss_pred HHHHHHHHhhhhhh
Q 005179 507 IDLVDEAGSRAHIE 520 (710)
Q Consensus 507 i~ll~~a~~~~~~~ 520 (710)
.+++..|...++..
T Consensus 370 ~~l~r~a~~~a~~~ 383 (637)
T PRK13765 370 GGLVRVAGDIARSE 383 (637)
T ss_pred HHHHHHHHHHHHhh
Confidence 67787776555443
No 250
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.3e-08 Score=96.75 Aligned_cols=61 Identities=26% Similarity=0.409 Sum_probs=50.8
Q ss_pred ccChHHHHHHHHHHH--------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i--------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
|+|..+-++.+...+ ++.+.|+.+| .|+|+|||||||||++|+|+|+- ++.-+||+-.||+
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidpp----kgvllygppgtgktl~aravanr---tdacfirvigsel 247 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPP----KGVLLYGPPGTGKTLCARAVANR---TDACFIRVIGSEL 247 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCC----CceEEeCCCCCchhHHHHHHhcc---cCceEEeehhHHH
Confidence 566666666666555 6778898877 79999999999999999999988 8888999999987
No 251
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.59 E-value=9.4e-08 Score=100.11 Aligned_cols=80 Identities=25% Similarity=0.301 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhCcccChHHHHHHHHHHH-------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC---
Q 005179 618 MLLVGLEEQLKKRVIGQDEAVAAISRAV-------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV--- 687 (710)
Q Consensus 618 ~~l~~l~~~L~~~v~Gq~~a~~~i~~~i-------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~--- 687 (710)
..+.++.+.|...++|++++++.|...+ .+.+.|+..+ .|..++||+||||||||++|+++|+.+....
T Consensus 11 ~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~-~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~ 89 (284)
T TIGR02880 11 SGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA-APTLHMSFTGNPGTGKTTVALRMAQILHRLGYVR 89 (284)
T ss_pred ccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-CCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcc
Confidence 3456677777778999999999987654 2345677643 3445899999999999999999999986522
Q ss_pred -CcceeeCCCCC
Q 005179 688 -RIHYLFFPSPF 698 (710)
Q Consensus 688 -~~li~~d~se~ 698 (710)
..++.++.+++
T Consensus 90 ~~~~v~v~~~~l 101 (284)
T TIGR02880 90 KGHLVSVTRDDL 101 (284)
T ss_pred cceEEEecHHHH
Confidence 24666665443
No 252
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=4.9e-07 Score=96.25 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCcc---------------ccCceEEEeehhhh--hh
Q 005179 297 TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF---------------LLSKRIMSLDMGLL--MA 359 (710)
Q Consensus 297 ~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~---------------l~~~~v~~ld~~~l--~~ 359 (710)
..++++... ..+-+..+||+||+|+|||++|+.+|+.+.+...... .....++.++...- -.
T Consensus 8 ~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~ 86 (325)
T PRK08699 8 EQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPEN 86 (325)
T ss_pred HHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccc
Confidence 345555544 2334455889999999999999999999876321000 01122333332110 00
Q ss_pred ccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--CeEEEEccChH
Q 005179 360 GAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQD 433 (710)
Q Consensus 360 g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~att~~ 433 (710)
|.+...--.+.++++.+.+.. .+.-|++||+++.| +...++.|...+++. ...+|.+|...
T Consensus 87 g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~L-------------d~~a~naLLk~LEep~~~~~~Ilvth~~ 153 (325)
T PRK08699 87 GRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESM-------------NLQAANSLLKVLEEPPPQVVFLLVSHAA 153 (325)
T ss_pred cccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhC-------------CHHHHHHHHHHHHhCcCCCEEEEEeCCh
Confidence 100000123446666666643 34568889999999 555677777777643 45566666655
Q ss_pred HHHhhhhccHHHHccccceEecCCCHHHHHHHHH
Q 005179 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (710)
Q Consensus 434 ~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~ 467 (710)
+ .+.+.+.+|++.+.|++|+.++..+.|.
T Consensus 154 ~-----~ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 154 D-----KVLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred H-----hChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 4 5778999999999999999998776665
No 253
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.59 E-value=8.7e-08 Score=73.32 Aligned_cols=52 Identities=42% Similarity=0.677 Sum_probs=47.6
Q ss_pred HHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhh
Q 005179 182 AVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (710)
Q Consensus 182 A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l 233 (710)
|.+.|+++|+.+|+++|||+||++++++.+.++|+++|+|.+.+++.+.+.+
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~l 52 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKAL 52 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999999887654
No 254
>PRK09183 transposase/IS protein; Provisional
Probab=98.57 E-value=1.4e-07 Score=97.48 Aligned_cols=162 Identities=21% Similarity=0.258 Sum_probs=85.6
Q ss_pred CCCcchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCcccc
Q 005179 266 GRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL 345 (710)
Q Consensus 266 ~~~~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~ 345 (710)
++|...+++.|..+.... +. ...+..+...-....+.|++|+||||||||+|+.+++..+...
T Consensus 67 ~~p~~~~l~~fd~~~~~~---------~~-~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~------- 129 (259)
T PRK09183 67 AFPAVKTFEEYDFTFATG---------AP-QKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRA------- 129 (259)
T ss_pred CCCCCCcHhhcccccCCC---------CC-HHHHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-------
Confidence 344557788776553211 11 1244444332223456789999999999999999998876432
Q ss_pred CceEEEeehhhhhhcc---ccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC
Q 005179 346 SKRIMSLDMGLLMAGA---KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG 422 (710)
Q Consensus 346 ~~~v~~ld~~~l~~g~---~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 422 (710)
+..+..++...+.... ...+. +..++.... ..+.+|+|||++.+... ......+.+++....+++
T Consensus 130 G~~v~~~~~~~l~~~l~~a~~~~~----~~~~~~~~~-~~~dlLiiDdlg~~~~~-------~~~~~~lf~li~~r~~~~ 197 (259)
T PRK09183 130 GIKVRFTTAADLLLQLSTAQRQGR----YKTTLQRGV-MAPRLLIIDEIGYLPFS-------QEEANLFFQVIAKRYEKG 197 (259)
T ss_pred CCeEEEEeHHHHHHHHHHHHHCCc----HHHHHHHHh-cCCCEEEEcccccCCCC-------hHHHHHHHHHHHHHHhcC
Confidence 5667776665554211 11122 223333221 23569999999875211 011122344444334455
Q ss_pred CeEEEEccC--hHHHHhhhhcc----HHHHcccc----ceEecCCC
Q 005179 423 ELQCIASTT--QDEHRTQFEKD----KALARRFQ----PVLISEPS 458 (710)
Q Consensus 423 ~v~vI~att--~~~~~~~~~~d----~aL~~Rf~----~I~v~~Ps 458 (710)
. +|.|+| ..+|...+.-| .++.+|+. .|.+.-.+
T Consensus 198 s--~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~g~s 241 (259)
T PRK09183 198 S--MILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGES 241 (259)
T ss_pred c--EEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEEEeecCCC
Confidence 4 344444 44555554222 35555552 45555443
No 255
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.57 E-value=2e-07 Score=95.78 Aligned_cols=110 Identities=24% Similarity=0.312 Sum_probs=69.6
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccc---cCccHHHHHHHHHHHHHhcCCeEE
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK---ERGELEARVTTLISEIQKSGDVIL 386 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~---~~g~~e~~l~~~~~~~~~~~~~IL 386 (710)
.+.|++|+|+||||||+|+.+|+.++... +.+++.+...+++.--+ ..|..+..+... +.. .-+|
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-------g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l~~--~dlL 171 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA-------GISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---LKK--VDLL 171 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---hhc--CCEE
Confidence 68899999999999999999999999632 78888888877763211 123444443332 333 3399
Q ss_pred EEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccC--hHHHHhhhh
Q 005179 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT--QDEHRTQFE 440 (710)
Q Consensus 387 ~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att--~~~~~~~~~ 440 (710)
||||+...-.. ......+..++....++... |.++| ..++..++.
T Consensus 172 IiDDlG~~~~~-------~~~~~~~~q~I~~r~~~~~~--~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 172 IIDDIGYEPFS-------QEEADLLFQLISRRYESRSL--IITSNLSFGEWDELFG 218 (254)
T ss_pred EEecccCccCC-------HHHHHHHHHHHHHHHhhccc--eeecCCChHHHHhhcc
Confidence 99999876221 11233445555555556666 44444 444444444
No 256
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=8.5e-08 Score=103.09 Aligned_cols=63 Identities=37% Similarity=0.481 Sum_probs=47.5
Q ss_pred ccChHHHHHHHHHHH-------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 631 VIGQDEAVAAISRAV-------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i-------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
|.|.|+|+..+.+.+ ++.+.|-+-| .|+||+||||||||+||+|+|.+ .+-.+.-...|||-.
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLP----KGVLLvGPPGTGKTlLARAvAGE---A~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLP----KGVLLVGPPGTGKTLLARAVAGE---AGVPFFYASGSEFDE 375 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCC----CceEEeCCCCCchhHHHHHhhcc---cCCCeEeccccchhh
Confidence 666666665555555 6667776655 79999999999999999999987 555667777778743
No 257
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.53 E-value=2.4e-07 Score=104.41 Aligned_cols=182 Identities=24% Similarity=0.339 Sum_probs=108.5
Q ss_pred CCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh--------
Q 005179 290 DPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-------- 359 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~-------- 359 (710)
..++|....+..+.+.+.. ....++++.|++||||+++++++....... +..++.+|+..+..
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~-------~~~~~~~~c~~~~~~~~~~~lf 206 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRA-------NGPFIALNMAAIPKDLIESELF 206 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCC-------CCCeEEEeCCCCCHHHHHHHhc
Confidence 3577877777666665533 345678999999999999999998765322 34566666544311
Q ss_pred ccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------CeEE
Q 005179 360 GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQC 426 (710)
Q Consensus 360 g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~v 426 (710)
|. ..|.+...............+..||||||+.| ..+.+..|..+++.+ ++++
T Consensus 207 g~-~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-------------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~ri 272 (463)
T TIGR01818 207 GH-EKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-------------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRI 272 (463)
T ss_pred CC-CCCCCCCcccCCCCcEEECCCCeEEEEchhhC-------------CHHHHHHHHHHHhcCcEEECCCCceeeeeeEE
Confidence 10 11111000000011122344678999999999 445566666655543 4578
Q ss_pred EEccChHHHH--hhhhccHHHHccccceEecCCC----HHHHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHH
Q 005179 427 IASTTQDEHR--TQFEKDKALARRFQPVLISEPS----QEDAVRILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (710)
Q Consensus 427 I~att~~~~~--~~~~~d~aL~~Rf~~I~v~~Ps----~~~~~~IL~~l~~~~~~~~~---~~i~~~~l~~l~~l 492 (710)
|++|+.+--. ..-...+.|..|+..+.+..|+ .++...+++.++.++...++ ..+++++++.+..+
T Consensus 273 i~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (463)
T TIGR01818 273 VAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347 (463)
T ss_pred EEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 8887754311 1112346777788755555454 55666667777666655544 46899998877654
No 258
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.51 E-value=6e-07 Score=95.45 Aligned_cols=120 Identities=19% Similarity=0.247 Sum_probs=71.8
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccc---cCccHHHHHHHHHHHHHhcCCeEE
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK---ERGELEARVTTLISEIQKSGDVIL 386 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~---~~g~~e~~l~~~~~~~~~~~~~IL 386 (710)
...+++|+|++|||||+|+.++|+.+... +..++.++...++..-. .....+ ....++.+... .+|
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-------g~~V~y~t~~~l~~~l~~~~~~~~~~--~~~~~~~l~~~--DLL 250 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-------GKSVIYRTADELIEILREIRFNNDKE--LEEVYDLLINC--DLL 250 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEEHHHHHHHHHHHHhccchh--HHHHHHHhccC--CEE
Confidence 34889999999999999999999998653 67788887766653211 111100 11123444433 489
Q ss_pred EEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccC--hHHHHhhhhccHHHHcccc
Q 005179 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT--QDEHRTQFEKDKALARRFQ 450 (710)
Q Consensus 387 ~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att--~~~~~~~~~~d~aL~~Rf~ 450 (710)
+|||++...... .....+.+++...+.++.-++| +|| +.++.. .+++.+.+|+.
T Consensus 251 IIDDlG~e~~t~-------~~~~~Lf~iin~R~~~~k~tIi-TSNl~~~el~~--~~~eri~SRL~ 306 (329)
T PRK06835 251 IIDDLGTEKITE-------FSKSELFNLINKRLLRQKKMII-STNLSLEELLK--TYSERISSRLL 306 (329)
T ss_pred EEeccCCCCCCH-------HHHHHHHHHHHHHHHCCCCEEE-ECCCCHHHHHH--HHhHHHHHHHH
Confidence 999998763221 1233455666555555544444 444 344333 24577888773
No 259
>PRK15115 response regulator GlrR; Provisional
Probab=98.50 E-value=2.1e-07 Score=104.37 Aligned_cols=181 Identities=20% Similarity=0.296 Sum_probs=105.8
Q ss_pred CcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh--------c
Q 005179 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--------G 360 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~--------g 360 (710)
.++|....+.++.+.... ....+++|+|++|+|||++|+++.+..... +..++.+++..+.. |
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~-------~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRA-------SKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCC-------CCCeEEEeCCCCCHHHHHHHhcC
Confidence 367777777666654322 345679999999999999999998765322 44566666654321 1
Q ss_pred cccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------CeEEE
Q 005179 361 AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCI 427 (710)
Q Consensus 361 ~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI 427 (710)
.. .|.+...............+.+|||||++.| ..+.+..|..+++.+ ++++|
T Consensus 208 ~~-~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii 273 (444)
T PRK15115 208 HA-RGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-------------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRII 273 (444)
T ss_pred CC-cCCCCCCccCCCCcEEECCCCEEEEEccccC-------------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEE
Confidence 00 0000000000000112234578999999999 455666666666543 46788
Q ss_pred EccChHHHHh--hhhccHHHHccccceEecCCCHHHHHH----HHHHHHHHHHhhcC---CCCCHHHHHHHHHH
Q 005179 428 ASTTQDEHRT--QFEKDKALARRFQPVLISEPSQEDAVR----ILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (710)
Q Consensus 428 ~att~~~~~~--~~~~d~aL~~Rf~~I~v~~Ps~~~~~~----IL~~l~~~~~~~~~---~~i~~~~l~~l~~l 492 (710)
++|+.+-... .-...+.|..|+..+.+..|+..+|.+ +++.++.++...++ ..+++++++.+..+
T Consensus 274 ~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (444)
T PRK15115 274 SATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 (444)
T ss_pred EeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 8877642111 112346677788777777777665543 44555555543333 25899998887644
No 260
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.50 E-value=1.6e-06 Score=102.44 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=80.1
Q ss_pred CCcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCC
Q 005179 589 PAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPT 668 (710)
Q Consensus 589 ~~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPp 668 (710)
+.......+...+...+.+||...+.+ ...+.+.++.|.+.++|++++++.|...+..... ......| .++|+|||
T Consensus 283 ~~~~e~~~~~~yl~~~~~~pw~~~~~~-~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~-~~~~~g~--~i~l~Gpp 358 (784)
T PRK10787 283 PMSAEATVVRGYIDWMVQVPWNARSKV-KKDLRQAQEILDTDHYGLERVKDRILEYLAVQSR-VNKIKGP--ILCLVGPP 358 (784)
T ss_pred CCCchHHHHHHHHHHHHhCCCCCCCcc-cccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh-cccCCCc--eEEEECCC
Confidence 344556678888999999999887664 4578899999999999999999999876653321 1111122 68999999
Q ss_pred CCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 669 GVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 669 GtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
|||||++|+.+|+.+- ..+++++++...+
T Consensus 359 G~GKTtl~~~ia~~l~---~~~~~i~~~~~~d 387 (784)
T PRK10787 359 GVGKTSLGQSIAKATG---RKYVRMALGGVRD 387 (784)
T ss_pred CCCHHHHHHHHHHHhC---CCEEEEEcCCCCC
Confidence 9999999999999853 4688888776544
No 261
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.2e-07 Score=93.37 Aligned_cols=48 Identities=33% Similarity=0.614 Sum_probs=38.4
Q ss_pred ccChHHHHHHHHHHH--------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 005179 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i--------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
|+|.+.-++.+..+| ++-..|+++| .|+|+|||||||||++|+|.|..
T Consensus 173 iGGldkQIqELvEAiVLpmth~ekF~~lgi~pP----KGvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 173 IGGLDKQIQELVEAIVLPMTHKEKFENLGIRPP----KGVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred cccHHHHHHHHHHHhccccccHHHHHhcCCCCC----CceEeeCCCCCcHHHHHHHHHHh
Confidence 666666666666555 5667788766 79999999999999999999876
No 262
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.50 E-value=2.3e-07 Score=104.52 Aligned_cols=180 Identities=17% Similarity=0.228 Sum_probs=107.0
Q ss_pred CCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh-------
Q 005179 289 IDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------- 359 (710)
Q Consensus 289 l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~------- 359 (710)
+..++|....+..+.+.+.. ....+++++|++||||+++|+++....... +.+++.+++..+..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~~~i~c~~~~~~~~~~~l 214 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRA-------KGPFIKVNCAALPESLLESEL 214 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCC-------CCCeEEEECCCCCHHHHHHHh
Confidence 34578887777777665433 345789999999999999999998754222 34566666654321
Q ss_pred -ccc---cCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------
Q 005179 360 -GAK---ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------- 422 (710)
Q Consensus 360 -g~~---~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~------------- 422 (710)
|.. ..|....+ ........+.+|||||++.| ....+..|..+++.+
T Consensus 215 fg~~~~~~~~~~~~~----~g~~~~a~~gtl~ld~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~~~~~~~ 277 (457)
T PRK11361 215 FGHEKGAFTGAQTLR----QGLFERANEGTLLLDEIGEM-------------PLVLQAKLLRILQEREFERIGGHQTIKV 277 (457)
T ss_pred cCCCCCCCCCCCCCC----CCceEECCCCEEEEechhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceeee
Confidence 100 00000000 00122344678999999999 445566666555432
Q ss_pred CeEEEEccChHHHH--hhhhccHHHHccccceEecCCCHHHHH----HHHHHHHHHHHhhcC---CCCCHHHHHHHHHH
Q 005179 423 ELQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDAV----RILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (710)
Q Consensus 423 ~v~vI~att~~~~~--~~~~~d~aL~~Rf~~I~v~~Ps~~~~~----~IL~~l~~~~~~~~~---~~i~~~~l~~l~~l 492 (710)
++++|++|+.+-.. ..-...+.+..|+..+.+..|+..+|. .++..++.++...++ ..+++++++.+..+
T Consensus 278 ~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 356 (457)
T PRK11361 278 DIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAW 356 (457)
T ss_pred ceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcC
Confidence 36889888764311 111244567778876777777655443 445555555544333 46888888776543
No 263
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.48 E-value=2.1e-07 Score=93.47 Aligned_cols=51 Identities=27% Similarity=0.391 Sum_probs=44.4
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
.+||+++++.+.-.++.++. .+..+.++|||||||.|||+||..+|++|--
T Consensus 28 fiGQ~~vk~~L~ifI~AAk~----r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv 78 (332)
T COG2255 28 FIGQEKVKEQLQIFIKAAKK----RGEALDHVLLFGPPGLGKTTLAHIIANELGV 78 (332)
T ss_pred hcChHHHHHHHHHHHHHHHh----cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC
Confidence 89999999999999988874 2334579999999999999999999999744
No 264
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=9.6e-08 Score=95.59 Aligned_cols=62 Identities=26% Similarity=0.407 Sum_probs=49.1
Q ss_pred cccChHHHHHHHHHHH--------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 630 RVIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i--------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.|+|.+.-+..|..++ -|-..|+++| .|++|||+||||||+||||+|+. +..-++|+-.||+
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpP----KGVIlyG~PGTGKTLLAKAVANq---TSATFlRvvGseL 255 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPP----KGVILYGEPGTGKTLLAKAVANQ---TSATFLRVVGSEL 255 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCC----CeeEEeCCCCCchhHHHHHHhcc---cchhhhhhhhHHH
Confidence 3777777777777776 4567888877 79999999999999999999988 5555666666654
No 265
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.48 E-value=5.2e-06 Score=92.78 Aligned_cols=220 Identities=20% Similarity=0.223 Sum_probs=128.3
Q ss_pred hhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHc-----CCCCCcEEEcCCCChHHHHHHHHHHHHH----hcCCC
Q 005179 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIV----QAEVP 341 (710)
Q Consensus 271 ~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~-----~~~~nvLL~GppG~GKT~la~~la~~l~----~~~~p 341 (710)
+.|..+-..|.-...| +.+-+|+.+...+-..+.. ..+..+++.|-||||||+.++.+.+.+. ++++|
T Consensus 380 S~l~~ara~Lhls~vp---~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p 456 (767)
T KOG1514|consen 380 SELSKARARLHLSAVP---ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP 456 (767)
T ss_pred hHHHHHHHHhHHhhcc---ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCC
Confidence 4555555555544444 3578899888887766543 2334688999999999999999988764 35555
Q ss_pred ccccCceEEEeehhhhhhc-----------cccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCC
Q 005179 342 VFLLSKRIMSLDMGLLMAG-----------AKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKG 406 (710)
Q Consensus 342 ~~l~~~~v~~ld~~~l~~g-----------~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~ 406 (710)
.+ ..++++.-.+... ...+-.+...+..+-.... ...++||+|||+|.|+...
T Consensus 457 ~f----~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-------- 524 (767)
T KOG1514|consen 457 KF----DYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-------- 524 (767)
T ss_pred Cc----cEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc--------
Confidence 43 2333432222100 0111122222222221111 2347899999999997541
Q ss_pred ChHhHHHhhc-ccccCCCeEEEEccChHHHHhhhhccHHHHcccc--ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCH
Q 005179 407 TGLDISNLLK-PSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTL 483 (710)
Q Consensus 407 ~~~~~~~~L~-~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~--~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~ 483 (710)
+.-++|++. +.+.+.+++||+..|.-+.-.- .+.....+|+. .|.|.+++.+|..+|+...+... -.+.+
T Consensus 525 -QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr-~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-----~~f~~ 597 (767)
T KOG1514|consen 525 -QDVLYNIFDWPTLKNSKLVVIAIANTMDLPER-LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-----DAFEN 597 (767)
T ss_pred -HHHHHHHhcCCcCCCCceEEEEecccccCHHH-HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-----hhcch
Confidence 223455553 5566788888877654331111 13345555664 89999999999999988765533 23456
Q ss_pred HHHHHHHHHhhhhhcCCCCcchHHHHHHHHHh
Q 005179 484 EAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 484 ~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~ 515 (710)
++++.++.....- ..-..+|.++++.|..
T Consensus 598 ~aielvarkVAav---SGDaRraldic~RA~E 626 (767)
T KOG1514|consen 598 KAIELVARKVAAV---SGDARRALDICRRAAE 626 (767)
T ss_pred hHHHHHHHHHHhc---cccHHHHHHHHHHHHH
Confidence 6655544432221 2223567777777763
No 266
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.48 E-value=5.1e-07 Score=82.94 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=65.7
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh------------ccc--cCccHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------------GAK--ERGELEARVTTLI 375 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~------------g~~--~~g~~e~~l~~~~ 375 (710)
.++.++|+||+|+|||++++.+++.+........ ...++.+++..... +.. ........+..+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4567899999999999999999998753210000 34455555433220 111 1123444455556
Q ss_pred HHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccCh
Q 005179 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432 (710)
Q Consensus 376 ~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~ 432 (710)
+.+......+|+|||+|.+. .....+.|+.++++..+.+|.++++
T Consensus 81 ~~l~~~~~~~lviDe~~~l~------------~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLF------------SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHH------------THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcC------------CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 66666655699999999983 2356777777777777777776665
No 267
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=9.7e-08 Score=96.93 Aligned_cols=63 Identities=37% Similarity=0.498 Sum_probs=47.5
Q ss_pred HHHHHHhhCcccChHHHHHHHHHHH----HHhhcCCCCCCC--CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 621 VGLEEQLKKRVIGQDEAVAAISRAV----KRSRVGLKDPNR--PTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~i----~~~r~gl~~p~r--p~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.++++.|.++|+||+.|++.++-++ ++.+....+-.- --+.+||.||||+|||+||+.||+.|
T Consensus 53 ~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L 121 (408)
T COG1219 53 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL 121 (408)
T ss_pred HHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh
Confidence 4778899999999999999877555 444322111101 11589999999999999999999996
No 268
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.46 E-value=1.8e-06 Score=86.94 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=78.0
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-CeEEEEccChH-------HHHhhhhccHHHHccccceEe
Q 005179 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-ELQCIASTTQD-------EHRTQFEKDKALARRFQPVLI 454 (710)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~att~~-------~~~~~~~~d~aL~~Rf~~I~v 454 (710)
|.||||||+|.| ..+...+|...+++. ..++|.+||.. .|..-..++-.|..|.-.|..
T Consensus 289 pGVLFIDEvHML-------------DIEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t 355 (454)
T KOG2680|consen 289 PGVLFIDEVHML-------------DIECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIIST 355 (454)
T ss_pred cceEEEeeehhh-------------hhHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeec
Confidence 789999999999 677888888888753 12233333321 223344677889999888999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHH
Q 005179 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 455 ~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~ 514 (710)
.+++.++..+||+..+. ..++.+.+++++.+......- .-..++.|+..+.
T Consensus 356 ~py~~~d~~~IL~iRc~----EEdv~m~~~A~d~Lt~i~~~t-----sLRYai~Lit~a~ 406 (454)
T KOG2680|consen 356 QPYTEEDIKKILRIRCQ----EEDVEMNPDALDLLTKIGEAT-----SLRYAIHLITAAS 406 (454)
T ss_pred ccCcHHHHHHHHHhhhh----hhccccCHHHHHHHHHhhhhh-----hHHHHHHHHHHHH
Confidence 99999999999998877 447899999999887664321 1133566665443
No 269
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.45 E-value=2.1e-07 Score=101.60 Aligned_cols=61 Identities=33% Similarity=0.475 Sum_probs=44.9
Q ss_pred ccChHHHHHHHHHHHH--------HhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAVK--------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~--------~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
|+|++..++.|...+. +.+.|+..| .++|||||||||||++|+++|+.+ ...++++..+++
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~p----kgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~l 215 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPP----RGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSEF 215 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCC----ceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHH
Confidence 6777777777766653 345566544 699999999999999999999985 335677665544
No 270
>PRK06921 hypothetical protein; Provisional
Probab=98.44 E-value=5.1e-07 Score=93.52 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=65.8
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEc
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFID 389 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~ID 389 (710)
..++++|+|++|+|||+|+.+++..+.... +..++.+....++... ...+ ..+...++.+.. ..+|+||
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~------g~~v~y~~~~~l~~~l--~~~~-~~~~~~~~~~~~--~dlLiID 184 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK------GVPVLYFPFVEGFGDL--KDDF-DLLEAKLNRMKK--VEVLFID 184 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc------CceEEEEEHHHHHHHH--HHHH-HHHHHHHHHhcC--CCEEEEe
Confidence 467899999999999999999999985431 4566676655544211 0111 112223333333 3599999
Q ss_pred cchh-hhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccc
Q 005179 390 EVHT-LIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF 449 (710)
Q Consensus 390 Eid~-l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf 449 (710)
|++. +.+.... +......+..++.....++..+|| +++... ..+...++.+.+|+
T Consensus 185 Dl~~~~~g~e~~---t~~~~~~lf~iin~R~~~~k~tIi-tsn~~~-~el~~~~~~l~sRi 240 (266)
T PRK06921 185 DLFKPVNGKPRA---TEWQIEQMYSVLNYRYLNHKPILI-SSELTI-DELLDIDEALGSRI 240 (266)
T ss_pred ccccccCCCccC---CHHHHHHHHHHHHHHHHCCCCEEE-ECCCCH-HHHhhhhhHHHHHH
Confidence 9955 2122111 001122345555555544444444 444321 11222356666654
No 271
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.42 E-value=2.5e-07 Score=101.32 Aligned_cols=61 Identities=31% Similarity=0.458 Sum_probs=47.1
Q ss_pred ccChHHHHHHHHHHHHH--------hhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~--------~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
|+|.++.++.+...+.. ...|+..| .++|||||||||||++|+++|+.+- ..++.++++++
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p----~gvLL~GppGtGKT~lAkaia~~~~---~~~i~v~~~~l 201 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPP----KGVLLYGPPGTGKTLLAKAVAHETN---ATFIRVVGSEL 201 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCC----CceEEECCCCCChHHHHHHHHHHhC---CCEEEeehHHH
Confidence 77777777777766532 34566555 6899999999999999999999853 46888888776
No 272
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.42 E-value=1.8e-06 Score=97.03 Aligned_cols=213 Identities=14% Similarity=0.131 Sum_probs=122.9
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCC-----CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRT-----KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~-----~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l 352 (710)
..|.++++|.+++++.-..+-++.+..+|.... ..-+||+|||||||||+++.||+++ +..+.+-
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el----------g~~v~Ew 76 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL----------GFEVQEW 76 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCeeEEe
Confidence 367788899999999888888888888776422 2336889999999999999999998 2222221
Q ss_pred -ehhh----------hhhccccCccHHHH---HHHH-HHHHH-----------hcCCeEEEEccchhhhhCCCCCCCCCC
Q 005179 353 -DMGL----------LMAGAKERGELEAR---VTTL-ISEIQ-----------KSGDVILFIDEVHTLIGSGTVGRGNKG 406 (710)
Q Consensus 353 -d~~~----------l~~g~~~~g~~e~~---l~~~-~~~~~-----------~~~~~IL~IDEid~l~~~~~~~~~~~~ 406 (710)
+... ........+.+..+ +..+ +...+ ...+.||+|||+-.++.. +
T Consensus 77 ~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~--------~ 148 (519)
T PF03215_consen 77 INPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR--------D 148 (519)
T ss_pred cCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch--------h
Confidence 0000 00000000111111 1111 11111 124678999999876432 1
Q ss_pred ChHhHHHhhcccccCC---CeEEEEccC--h---HHHHh-----hhhccHHHHc--cccceEecCCCHHHHHHHHHHHHH
Q 005179 407 TGLDISNLLKPSLGRG---ELQCIASTT--Q---DEHRT-----QFEKDKALAR--RFQPVLISEPSQEDAVRILLGLRE 471 (710)
Q Consensus 407 ~~~~~~~~L~~~l~~~---~v~vI~att--~---~~~~~-----~~~~d~aL~~--Rf~~I~v~~Ps~~~~~~IL~~l~~ 471 (710)
...+.+.|..++..+ .+++|.+-+ . ..+.. ..-+.+.+.. ++..|.|.+-...-..+.|..++.
T Consensus 149 -~~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~ 227 (519)
T PF03215_consen 149 -TSRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILK 227 (519)
T ss_pred -HHHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHH
Confidence 256777777776643 455555511 1 01000 0123456665 345899999999888888888877
Q ss_pred HHHh-hcC-CCCC--HHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHh
Q 005179 472 KYEA-HHN-CKFT--LEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 472 ~~~~-~~~-~~i~--~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~ 515 (710)
.... ..+ .... .++++.++..+.+.+. .||.-|...|.
T Consensus 228 ~E~~~~~~~~~~p~~~~~l~~I~~~s~GDIR------sAIn~LQf~~~ 269 (519)
T PF03215_consen 228 KEARSSSGKNKVPDKQSVLDSIAESSNGDIR------SAINNLQFWCL 269 (519)
T ss_pred HHhhhhcCCccCCChHHHHHHHHHhcCchHH------HHHHHHHHHhc
Confidence 5421 112 1222 3468888877665543 36666666654
No 273
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.4e-07 Score=90.78 Aligned_cols=66 Identities=24% Similarity=0.380 Sum_probs=53.7
Q ss_pred HhhCcccChHHHHHHHHHHHH--------HhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 626 QLKKRVIGQDEAVAAISRAVK--------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 626 ~L~~~v~Gq~~a~~~i~~~i~--------~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
.-.+.|+|.+.-+..|...|. +-..|+..| .|+|||||||||||+||+|+|.. ++-.+||+..||
T Consensus 144 StYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP----KGvlLygppgtGktLlaraVahh---t~c~firvsgse 216 (404)
T KOG0728|consen 144 STYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP----KGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGSE 216 (404)
T ss_pred cHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC----cceEEecCCCCchhHHHHHHHhh---cceEEEEechHH
Confidence 344558888888877777662 335688776 69999999999999999999999 777899999988
Q ss_pred C
Q 005179 698 F 698 (710)
Q Consensus 698 ~ 698 (710)
+
T Consensus 217 l 217 (404)
T KOG0728|consen 217 L 217 (404)
T ss_pred H
Confidence 7
No 274
>PLN03025 replication factor C subunit; Provisional
Probab=98.41 E-value=2.5e-07 Score=98.86 Aligned_cols=71 Identities=21% Similarity=0.313 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC--Ccce
Q 005179 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV--RIHY 691 (710)
Q Consensus 614 ~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~--~~li 691 (710)
|.+..+...+.+ ++||++++..+...+...+ . .++||+||||||||++|+++|+++||.. ...+
T Consensus 3 w~~kyrP~~l~~-----~~g~~~~~~~L~~~~~~~~----~-----~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (319)
T PLN03025 3 WVEKYRPTKLDD-----IVGNEDAVSRLQVIARDGN----M-----PNLILSGPPGTGKTTSILALAHELLGPNYKEAVL 68 (319)
T ss_pred hhhhcCCCCHHH-----hcCcHHHHHHHHHHHhcCC----C-----ceEEEECCCCCCHHHHHHHHHHHHhcccCcccee
Confidence 444445555556 8999999998876544211 1 2799999999999999999999999864 3456
Q ss_pred eeCCCCC
Q 005179 692 LFFPSPF 698 (710)
Q Consensus 692 ~~d~se~ 698 (710)
.++.|+.
T Consensus 69 eln~sd~ 75 (319)
T PLN03025 69 ELNASDD 75 (319)
T ss_pred eeccccc
Confidence 6666654
No 275
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.39 E-value=3.5e-07 Score=102.07 Aligned_cols=50 Identities=36% Similarity=0.547 Sum_probs=38.5
Q ss_pred ccChHHHHHHHHHHHH--------HhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 631 VIGQDEAVAAISRAVK--------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~--------~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
|+|+++.++.|...+. +.+.|+..| .++|||||||||||++||++|+.+.
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p----~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYREYDLKPP----KGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHhccCCCC----cceEEECCCCCcHHHHHHHHHHhhc
Confidence 5666666666666653 345566654 6899999999999999999999974
No 276
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=3.9e-06 Score=87.02 Aligned_cols=138 Identities=18% Similarity=0.125 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCccc------cCceEEEeehhhhhhccccCccHHH
Q 005179 297 TEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL------LSKRIMSLDMGLLMAGAKERGELEA 369 (710)
Q Consensus 297 ~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~l------~~~~v~~ld~~~l~~g~~~~g~~e~ 369 (710)
..++.+...+...+-.| .||+||+|+||+++|..+|+.+.+...+... ....++.+.. .+.. ..--.+
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p----~~~~-~~I~id 78 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSP----QGKG-RLHSIE 78 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEec----CCCC-CcCcHH
Confidence 35667777777755544 5699999999999999999999775422110 0111222211 0100 000123
Q ss_pred HHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChHHHHhhhhccH
Q 005179 370 RVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDK 443 (710)
Q Consensus 370 ~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~~~~~~~~~d~ 443 (710)
.++.+.+.+.. ++.-|++||++|.+ ..+++|.|+..|++ .++++|..|+..+ .+.|
T Consensus 79 qiR~l~~~~~~~p~e~~~kv~ii~~ad~m-------------t~~AaNaLLK~LEEPp~~~~fiL~~~~~~-----~ll~ 140 (290)
T PRK05917 79 TPRAIKKQIWIHPYESPYKIYIIHEADRM-------------TLDAISAFLKVLEDPPQHGVIILTSAKPQ-----RLPP 140 (290)
T ss_pred HHHHHHHHHhhCccCCCceEEEEechhhc-------------CHHHHHHHHHHhhcCCCCeEEEEEeCChh-----hCcH
Confidence 35566655543 34569999999999 66788999999985 3566666666654 6789
Q ss_pred HHHccccceEecCC
Q 005179 444 ALARRFQPVLISEP 457 (710)
Q Consensus 444 aL~~Rf~~I~v~~P 457 (710)
++++|++.+.|+++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 99999999999775
No 277
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.38 E-value=5.3e-07 Score=99.16 Aligned_cols=61 Identities=30% Similarity=0.465 Sum_probs=46.9
Q ss_pred ccChHHHHHHHHHHHHH--------hhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAVKR--------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~--------~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
|+|+++.++.|...+.. ...|+..| .++|||||||||||++|+++|+.+- ..+++++.+++
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p----~gVLL~GPPGTGKT~LAraIA~el~---~~fi~V~~seL 253 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPP----KGVILYGPPGTGKTLLAKAVANETS---ATFLRVVGSEL 253 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCC----cEEEEECCCCCCHHHHHHHHHHhhC---CCEEEEecchh
Confidence 67777777777776642 34566544 6899999999999999999999853 46788887776
No 278
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.37 E-value=5.4e-07 Score=87.99 Aligned_cols=48 Identities=38% Similarity=0.593 Sum_probs=33.6
Q ss_pred CcccCHHHHHHHHHHHH---cCCCCCcEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 291 PVIGRETEIQRIIQILC---RRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~---~~~~~nvLL~GppG~GKT~la~~la~~l~~~ 338 (710)
+++||+++++++...+. ...+++++|+|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999883 2345779999999999999999998887654
No 279
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.9e-06 Score=92.92 Aligned_cols=138 Identities=20% Similarity=0.262 Sum_probs=84.2
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccc
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEi 391 (710)
..+||.||||+|||+||-.+|... +.+++.+--..-+.|.... .--..++.+|+.+.++.-.|+++|||
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S----------~FPFvKiiSpe~miG~sEs-aKc~~i~k~F~DAYkS~lsiivvDdi 607 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSS----------DFPFVKIISPEDMIGLSES-AKCAHIKKIFEDAYKSPLSIIVVDDI 607 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhc----------CCCeEEEeChHHccCccHH-HHHHHHHHHHHHhhcCcceEEEEcch
Confidence 457999999999999999998765 4444444322333333221 11234788888888888899999999
Q ss_pred hhhhhCCCCCCCCCCChHhHHHhhccccc----CC-CeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCH-HHHHH
Q 005179 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLG----RG-ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ-EDAVR 464 (710)
Q Consensus 392 d~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~-~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~-~~~~~ 464 (710)
++|+.-...|- -.+.-+...|+-++. .| ++.+++||+..++.. +-.+...|+ .|.|+..+. ++..+
T Consensus 608 ErLiD~vpIGP---RfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~----~m~i~~~F~~~i~Vpnl~~~~~~~~ 680 (744)
T KOG0741|consen 608 ERLLDYVPIGP---RFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ----EMGILDCFSSTIHVPNLTTGEQLLE 680 (744)
T ss_pred hhhhcccccCc---hhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH----HcCHHHhhhheeecCccCchHHHHH
Confidence 99986543310 011122223332332 23 566677776655322 234566776 778877654 67666
Q ss_pred HHH
Q 005179 465 ILL 467 (710)
Q Consensus 465 IL~ 467 (710)
+|+
T Consensus 681 vl~ 683 (744)
T KOG0741|consen 681 VLE 683 (744)
T ss_pred HHH
Confidence 665
No 280
>PHA00729 NTP-binding motif containing protein
Probab=98.33 E-value=3.2e-06 Score=84.20 Aligned_cols=126 Identities=15% Similarity=0.174 Sum_probs=71.3
Q ss_pred HHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCC------ccccCceEEEeehhhhhhccccCccHHHHHHHH
Q 005179 301 RIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVP------VFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374 (710)
Q Consensus 301 ~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p------~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~ 374 (710)
++++.+......|++|+|+|||||||+|.+|+..+...-.+ ....+...+.++...+. ..+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll----------~~L~~a 76 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDAL----------EKIQDA 76 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHH----------HHHHHH
Confidence 34444445555689999999999999999999987311000 00112233333333322 122222
Q ss_pred HHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEe
Q 005179 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLI 454 (710)
Q Consensus 375 ~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v 454 (710)
++.. ....+|+|||+..-...... ..+ . ...++.+.+++++|++.+.+
T Consensus 77 ~~~~--~~~dlLIIDd~G~~~~~~~w-------h~~------------~-----------~~~yf~L~~aLrSR~~l~il 124 (226)
T PHA00729 77 IDND--YRIPLIIFDDAGIWLSKYVW-------YED------------Y-----------MKTFYKIYALIRTRVSAVIF 124 (226)
T ss_pred HhcC--CCCCEEEEeCCchhhcccch-------hhh------------c-----------cchHHHHHHHHHhhCcEEEE
Confidence 2111 11247899997544211000 000 0 01244677888889999999
Q ss_pred cCCCHHHHHHHHHH
Q 005179 455 SEPSQEDAVRILLG 468 (710)
Q Consensus 455 ~~Ps~~~~~~IL~~ 468 (710)
.+++.++....|+.
T Consensus 125 ~~ls~edL~~~Lr~ 138 (226)
T PHA00729 125 TTPSPEDLAFYLRE 138 (226)
T ss_pred ecCCHHHHHHHHHh
Confidence 99999987777775
No 281
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=8.2e-07 Score=90.96 Aligned_cols=75 Identities=35% Similarity=0.507 Sum_probs=55.8
Q ss_pred HHHHHhhCcccChHHHHHHHHHHH--HHhhcCCCCCCC---CCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 622 GLEEQLKKRVIGQDEAVAAISRAV--KRSRVGLKDPNR---PTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 622 ~l~~~L~~~v~Gq~~a~~~i~~~i--~~~r~gl~~p~r---p~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
++-..|.+.|+||++|+.+|+-++ ++-|..+....| -+..+|..||||||||++|+-||+. .+.++|.+--.
T Consensus 8 eIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl---~~aPFiKVEAT 84 (444)
T COG1220 8 EIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKL---AGAPFIKVEAT 84 (444)
T ss_pred HHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHH---hCCCeEEEEee
Confidence 345567788999999999999888 344444433222 1258999999999999999999999 56677776655
Q ss_pred CCC
Q 005179 697 PFN 699 (710)
Q Consensus 697 e~~ 699 (710)
-|-
T Consensus 85 KfT 87 (444)
T COG1220 85 KFT 87 (444)
T ss_pred eee
Confidence 553
No 282
>PF05729 NACHT: NACHT domain
Probab=98.31 E-value=7.7e-06 Score=78.05 Aligned_cols=144 Identities=19% Similarity=0.214 Sum_probs=78.0
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHH-----------HH-HHHHHHh
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV-----------TT-LISEIQK 380 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l-----------~~-~~~~~~~ 380 (710)
-++|+|+||+|||++++.++..+.....+... ..-++.+.+......... ..+...+ .. +...+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELLEK 79 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHHHc
Confidence 36899999999999999999988765432211 112223333222211100 0111111 11 1112234
Q ss_pred cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC---CCeEEEEccChHHHHhhhhccHHHHccc---cceEe
Q 005179 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---GELQCIASTTQDEHRTQFEKDKALARRF---QPVLI 454 (710)
Q Consensus 381 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~---~~v~vI~att~~~~~~~~~~d~aL~~Rf---~~I~v 454 (710)
....+|+||.+|.+...... .........|..++.. .++.+|.++++..+. .+.+.+ ..+.+
T Consensus 80 ~~~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~-------~~~~~~~~~~~~~l 147 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFP-------DLRRRLKQAQILEL 147 (166)
T ss_pred CCceEEEEechHhcccchhh-----hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHH-------HHHHhcCCCcEEEE
Confidence 56789999999999543211 0112233444444432 345666666654321 133433 36899
Q ss_pred cCCCHHHHHHHHHHHH
Q 005179 455 SEPSQEDAVRILLGLR 470 (710)
Q Consensus 455 ~~Ps~~~~~~IL~~l~ 470 (710)
.+.+.++..++++...
T Consensus 148 ~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 148 EPFSEEDIKQYLRKYF 163 (166)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999888887654
No 283
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.6e-06 Score=98.20 Aligned_cols=121 Identities=25% Similarity=0.384 Sum_probs=89.7
Q ss_pred CcccCHHHHHHHHHHHHcCC--------CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh---
Q 005179 291 PVIGRETEIQRIIQILCRRT--------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--- 359 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~~--------~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~--- 359 (710)
.++|+++.+..+.+.+.+.. ...++|.||.|||||-||++||..+... ...++.+|++.+..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs-------e~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS-------EENFIRLDMSEFQEVSK 635 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC-------ccceEEechhhhhhhhh
Confidence 59999999999998876522 1236899999999999999999998433 56788899886332
Q ss_pred --c--cccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------
Q 005179 360 --G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------- 422 (710)
Q Consensus 360 --g--~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~------------- 422 (710)
| ..|+|..+ ...+.+.++..+.+|++||||+.. ..++++.|++++++|
T Consensus 636 ligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA-------------h~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 636 LIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA-------------HPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred ccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc-------------CHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 1 23455432 345666677788899999999987 678899999888865
Q ss_pred CeEEEEccChH
Q 005179 423 ELQCIASTTQD 433 (710)
Q Consensus 423 ~v~vI~att~~ 433 (710)
+.+||.|.|..
T Consensus 701 N~I~IMTsn~~ 711 (898)
T KOG1051|consen 701 NAIFIMTSNVG 711 (898)
T ss_pred ceEEEEecccc
Confidence 45567666653
No 284
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.29 E-value=1.5e-05 Score=91.10 Aligned_cols=177 Identities=18% Similarity=0.138 Sum_probs=110.3
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh----hhhhhccccCccHHHHHHHH---H--HHHHhc
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM----GLLMAGAKERGELEARVTTL---I--SEIQKS 381 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~----~~l~~g~~~~g~~e~~l~~~---~--~~~~~~ 381 (710)
-.+++|.|++|+|||+++++++..+.. ..| +..+.. ..++.| ++++..++.= + ..+...
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-~~p-------~r~~p~~~t~~~L~Gg----~Dl~~~l~~g~~~~~pGlla~A 92 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPA-GTP-------LRRLPPGIADDRLLGG----LDLAATLRAGRPVAQRGLLAEA 92 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCC-CCC-------cccCCCCCcHHHccCC----chHHhHhhcCCcCCCCCceeec
Confidence 367999999999999999999987732 112 122111 112211 1122211110 0 112234
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC---------------CeEEEEccChHHHHhhhhccHHHH
Q 005179 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALA 446 (710)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~---------------~v~vI~att~~~~~~~~~~d~aL~ 446 (710)
.+.||||||+..+ ...+++.|.+.|+.| .+.+|++.+..+|. ..+.+++.
T Consensus 93 h~GvL~lDe~n~~-------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~--~~L~~~lL 157 (584)
T PRK13406 93 DGGVLVLAMAERL-------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED--ERAPAALA 157 (584)
T ss_pred cCCEEEecCcccC-------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc--cCCCHHhH
Confidence 4679999999998 566888888888865 45578875554443 35789999
Q ss_pred cccc-ceEecCCCHHHHH-------HHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhh
Q 005179 447 RRFQ-PVLISEPSQEDAV-------RILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518 (710)
Q Consensus 447 ~Rf~-~I~v~~Ps~~~~~-------~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~ 518 (710)
.||. .|.+..|+..+.. .|... ..++ .++.++++.+++++..+..+-- ..+...+.++.-|.+.+.
T Consensus 158 DRf~l~v~v~~~~~~~~~~~~~~~~~I~~A-R~rl---~~v~v~~~~l~~i~~~~~~~gv--~S~Ra~i~llraARa~Aa 231 (584)
T PRK13406 158 DRLAFHLDLDGLALRDAREIPIDADDIAAA-RARL---PAVGPPPEAIAALCAAAAALGI--ASLRAPLLALRAARAAAA 231 (584)
T ss_pred hheEEEEEcCCCChHHhcccCCCHHHHHHH-HHHH---ccCCCCHHHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHHH
Confidence 9998 7888888755432 22222 2222 4789999999998888776531 124555667766665555
Q ss_pred hh
Q 005179 519 IE 520 (710)
Q Consensus 519 ~~ 520 (710)
+.
T Consensus 232 L~ 233 (584)
T PRK13406 232 LA 233 (584)
T ss_pred Hc
Confidence 44
No 285
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.29 E-value=1.1e-06 Score=93.10 Aligned_cols=69 Identities=25% Similarity=0.377 Sum_probs=54.3
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC----CCCcceeeCC----CCCCCc
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG----SVRIHYLFFP----SPFNSV 701 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg----~~~~li~~d~----se~~~~ 701 (710)
.|+|++++++.+...++....|...+.+ .++|+||||||||++|++||+.|=. .+..+..+.. |++...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~---il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~ 128 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQ---ILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHED 128 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCc---EEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccC
Confidence 5999999999999999888877765433 6899999999999999999999733 2446666665 555443
No 286
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.28 E-value=6.3e-07 Score=94.27 Aligned_cols=50 Identities=36% Similarity=0.613 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCcccChHHHHH---HHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 005179 619 LLVGLEEQLKKRVIGQDEAVA---AISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 619 ~l~~l~~~L~~~v~Gq~~a~~---~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
+..++++ |+||++.+. .|.+++.... +.+++||||||||||+||++||..
T Consensus 19 RP~~lde-----~vGQ~HLlg~~~~lrr~v~~~~---------l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 19 RPKSLDE-----VVGQEHLLGEGKPLRRAVEAGH---------LHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CCCCHHH-----hcChHhhhCCCchHHHHHhcCC---------CceeEEECCCCCCHHHHHHHHHHh
Confidence 3445555 999988873 4444444333 258999999999999999999997
No 287
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.27 E-value=1.8e-06 Score=96.77 Aligned_cols=181 Identities=18% Similarity=0.298 Sum_probs=105.2
Q ss_pred CcccCHHHHHHHHHHHH--cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh--------c
Q 005179 291 PVIGRETEIQRIIQILC--RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--------G 360 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~--~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~--------g 360 (710)
.++|....+..+...+. .....+++++|++|+||+++++++....... +.+++.+++..+.. |
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~-------~~~~i~~~c~~~~~~~~~~~lfg 212 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARS-------EKPLVTLNCAALNESLLESELFG 212 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCC-------CCCeeeeeCCCCCHHHHHHHhcC
Confidence 35666666665554332 2345779999999999999999998765322 34566666654321 1
Q ss_pred cccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------CeEEE
Q 005179 361 AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCI 427 (710)
Q Consensus 361 ~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI 427 (710)
. ..|.+..........+....+++||||||+.| ..+.+..|..+++.+ ++++|
T Consensus 213 ~-~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l-------------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii 278 (441)
T PRK10365 213 H-EKGAFTGADKRREGRFVEADGGTLFLDEIGDI-------------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLI 278 (441)
T ss_pred C-CCCCcCCCCcCCCCceeECCCCEEEEeccccC-------------CHHHHHHHHHHHccCcEEeCCCCceeeeceEEE
Confidence 0 00100000000001122345678999999999 445566666666543 35688
Q ss_pred EccChHHHHhh--hhccHHHHccccceEecCCCHHHH----HHHHHHHHHHHHhhcC---CCCCHHHHHHHHHH
Q 005179 428 ASTTQDEHRTQ--FEKDKALARRFQPVLISEPSQEDA----VRILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (710)
Q Consensus 428 ~att~~~~~~~--~~~d~aL~~Rf~~I~v~~Ps~~~~----~~IL~~l~~~~~~~~~---~~i~~~~l~~l~~l 492 (710)
++|+.+..... -...+.|..||..+.+..|+..+| ..+++.++.++...++ ..+++++++.+..+
T Consensus 279 ~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (441)
T PRK10365 279 AATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 (441)
T ss_pred EeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 88776542211 124566677887777777765544 4455555555544333 35888888777544
No 288
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.27 E-value=3.3e-06 Score=88.78 Aligned_cols=173 Identities=17% Similarity=0.240 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh----------hh--hc
Q 005179 295 RETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL----------LM--AG 360 (710)
Q Consensus 295 r~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~----------l~--~g 360 (710)
||.+++++.+.|.. ....-+.|+|++|+|||+||..+++...... .. + .+++++++. +. .+
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~---~f-~-~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKN---RF-D-GVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCC---CC-T-EEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccc---cc-c-ccccccccccccccccccccccccc
Confidence 67899999999987 4455678999999999999999997743111 11 1 223332211 10 01
Q ss_pred cc-----cCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc--CCCeEEEEccChH
Q 005179 361 AK-----ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQD 433 (710)
Q Consensus 361 ~~-----~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~att~~ 433 (710)
.. ...+.+.....+.+.+ ...+++|++||++... .+.. +...+. ..+..+|.||...
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~--------------~~~~-l~~~~~~~~~~~kilvTTR~~ 139 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDEE--------------DLEE-LREPLPSFSSGSKILVTTRDR 139 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHH--------------HH--------HCHHSS-EEEEEESCG
T ss_pred ccccccccccccccccccchhhh-ccccceeeeeeecccc--------------cccc-ccccccccccccccccccccc
Confidence 11 1223444344444433 3458999999998762 1211 222221 2235566666554
Q ss_pred HHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 434 ~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
. +-..+......+.+...+.++..+++......... ......++..+.+++.+.+
T Consensus 140 ~------v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~~i~~~c~g 194 (287)
T PF00931_consen 140 S------VAGSLGGTDKVIELEPLSEEEALELFKKRAGRKES-ESPEDLEDLAKEIVEKCGG 194 (287)
T ss_dssp G------GGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT
T ss_pred c------ccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence 2 11122222447999999999999888876442210 0112223455667776654
No 289
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.2e-06 Score=97.90 Aligned_cols=48 Identities=38% Similarity=0.561 Sum_probs=40.7
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
|+||++++..+.+++...+ ...++||+||||||||++|+++|+.++..
T Consensus 16 ivGq~~i~~~L~~~i~~~~--------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 16 VVGQDHVKKLIINALKKNS--------ISHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred ccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 9999999999888776543 22479999999999999999999998753
No 290
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.26 E-value=7.9e-06 Score=84.04 Aligned_cols=166 Identities=22% Similarity=0.283 Sum_probs=99.5
Q ss_pred CCcccCHHHHHHHHHHHHc----CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh------hh--
Q 005179 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG------LL-- 357 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~----~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~------~l-- 357 (710)
-++.|..++-..+.+++.+ +..+.++++||.|+|||.++....... + .+.+ +.-++.+|.. .+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~-q-~~~E---~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI-Q-ENGE---NFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH-H-hcCC---eEEEEEECccchhhHHHHHH
Confidence 4577776666666555543 678899999999999999876544332 1 1110 1112222211 00
Q ss_pred ---------hhccccCccHHHHHHHHHHHHHhc-----CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccc-ccCC
Q 005179 358 ---------MAGAKERGELEARVTTLISEIQKS-----GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS-LGRG 422 (710)
Q Consensus 358 ---------~~g~~~~g~~e~~l~~~~~~~~~~-----~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~-l~~~ 422 (710)
....+..|.+.+.+..++..++.. .++|+++||+|..++-.. +.-+.|++.-. -++.
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r--------QtllYnlfDisqs~r~ 170 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR--------QTLLYNLFDISQSARA 170 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh--------hHHHHHHHHHHhhcCC
Confidence 122344566777777777766542 356777899999865311 22234443211 1256
Q ss_pred CeEEEEccChHHHHhhhhccHHHHcccc--ceEecCC-CHHHHHHHHHHHH
Q 005179 423 ELQCIASTTQDEHRTQFEKDKALARRFQ--PVLISEP-SQEDAVRILLGLR 470 (710)
Q Consensus 423 ~v~vI~att~~~~~~~~~~d~aL~~Rf~--~I~v~~P-s~~~~~~IL~~l~ 470 (710)
.+.+||.|+.-+...+ +...+.+||. .|.+.++ +.++...+++.++
T Consensus 171 Piciig~Ttrld~lE~--LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 171 PICIIGVTTRLDILEL--LEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred CeEEEEeeccccHHHH--HHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 7889998887664443 4578999996 4666654 4777777777665
No 291
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.25 E-value=1.7e-06 Score=91.38 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=49.0
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccc---cCccHHHHHHHHHHHHHhcCCeEE
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK---ERGELEARVTTLISEIQKSGDVIL 386 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~---~~g~~e~~l~~~~~~~~~~~~~IL 386 (710)
...+++|+|++|||||+|+.++++.+... +..+..+.+..++..-+ ..+. +...++.+.. ..+|
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~-------g~~v~~~~~~~l~~~lk~~~~~~~----~~~~l~~l~~--~dlL 221 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK-------GVSSTLLHFPEFIRELKNSISDGS----VKEKIDAVKE--APVL 221 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCEEEEEHHHHHHHHHHHHhcCc----HHHHHHHhcC--CCEE
Confidence 45689999999999999999999999653 56666666665542211 1122 2344444444 3499
Q ss_pred EEccchhh
Q 005179 387 FIDEVHTL 394 (710)
Q Consensus 387 ~IDEid~l 394 (710)
+|||+..-
T Consensus 222 iIDDiG~e 229 (306)
T PRK08939 222 MLDDIGAE 229 (306)
T ss_pred EEecCCCc
Confidence 99999764
No 292
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.22 E-value=1.4e-06 Score=94.86 Aligned_cols=62 Identities=32% Similarity=0.461 Sum_probs=45.6
Q ss_pred cccChHHHHHHHHHHHHHh--------hcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRS--------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~--------r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.|+|.++.++.|...+... ..|+..| .++|||||||||||++|+++|+.+.. .++++..+++
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p----~gvLL~GppGtGKT~lakaia~~l~~---~~~~v~~~~l 192 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPP----KGVLLYGPPGTGKTLLAKAVAHETNA---TFIRVVGSEL 192 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCC----ceEEEECCCCCCHHHHHHHHHHhCCC---CEEecchHHH
Confidence 4788888888887776432 3355443 68999999999999999999998643 4666655443
No 293
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.22 E-value=1.5e-06 Score=98.50 Aligned_cols=61 Identities=36% Similarity=0.464 Sum_probs=43.5
Q ss_pred ccChHHHHHHHHHHHH-------HhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAVK-------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~-------~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
|+|++++++.+...+. +...|...| .++|||||||||||++|++||..+ .-.++.++.+++
T Consensus 57 i~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~----~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~ 124 (495)
T TIGR01241 57 VAGIDEAKEELMEIVDFLKNPSKFTKLGAKIP----KGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDF 124 (495)
T ss_pred hCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCC----CcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHH
Confidence 5666666666655553 333454333 589999999999999999999984 446777776655
No 294
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=1.7e-06 Score=94.29 Aligned_cols=57 Identities=30% Similarity=0.508 Sum_probs=46.5
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCC-CeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRP-TAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp-~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
.|+||+.+++.+.+++...+.+.....++ ..++||+||||||||++|+++|+.++..
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 49999999999999998776443333332 2479999999999999999999998764
No 295
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.22 E-value=1.3e-05 Score=82.84 Aligned_cols=178 Identities=13% Similarity=0.248 Sum_probs=109.8
Q ss_pred cCCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh------
Q 005179 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------ 358 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~------ 358 (710)
..|+.+++....++.++.--.+ .--.++||.|+.||||-.+|++-......++.| ++.++|..+-
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~p-------FlalNCA~lPe~~aEs 273 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKP-------FLALNCASLPEDAAES 273 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCC-------eeEeecCCCchhHhHH
Confidence 3577889998888887764433 234678999999999999999987666555444 4444444332
Q ss_pred --hccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------C
Q 005179 359 --AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------E 423 (710)
Q Consensus 359 --~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~ 423 (710)
.|.. .|. +--..+|+.+ .+..+|+|||..+ +..++..|+.++..| +
T Consensus 274 ElFG~a-pg~--~gk~GffE~A---ngGTVlLDeIgEm-------------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vd 334 (511)
T COG3283 274 ELFGHA-PGD--EGKKGFFEQA---NGGTVLLDEIGEM-------------SPRLQAKLLRFLNDGTFRRVGEDHEVHVD 334 (511)
T ss_pred HHhcCC-CCC--CCccchhhhc---cCCeEEeehhhhc-------------CHHHHHHHHHHhcCCceeecCCcceEEEE
Confidence 1111 110 0012344433 3557899999888 666778888888765 4
Q ss_pred eEEEEccChH--HHHhhhhccHHHHccccceEecCCCHHHH----HHHHHHHHHHHHhhcCC---CCCHHHHHHHH
Q 005179 424 LQCIASTTQD--EHRTQFEKDKALARRFQPVLISEPSQEDA----VRILLGLREKYEAHHNC---KFTLEAINAAV 490 (710)
Q Consensus 424 v~vI~att~~--~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~----~~IL~~l~~~~~~~~~~---~i~~~~l~~l~ 490 (710)
++||++|..+ ++...-+.-..|.-|+.++.+..|...+| ..+.+.+..++....++ +++++.+.++.
T Consensus 335 VRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~ 410 (511)
T COG3283 335 VRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLT 410 (511)
T ss_pred EEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Confidence 6789887653 22222233456666888777777764444 44455555555544443 56777666553
No 296
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.21 E-value=1.4e-06 Score=93.79 Aligned_cols=72 Identities=33% Similarity=0.457 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC--Ccc
Q 005179 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV--RIH 690 (710)
Q Consensus 613 ~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~--~~l 690 (710)
.|.+..+...+.+ ++|++++++.+...+...+ ..++||+||||||||++|+++|+.+++.. ...
T Consensus 4 ~w~~ky~P~~~~~-----~~g~~~~~~~L~~~~~~~~---------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~ 69 (337)
T PRK12402 4 LWTEKYRPALLED-----ILGQDEVVERLSRAVDSPN---------LPHLLVQGPPGSGKTAAVRALARELYGDPWENNF 69 (337)
T ss_pred chHHhhCCCcHHH-----hcCCHHHHHHHHHHHhCCC---------CceEEEECCCCCCHHHHHHHHHHHhcCcccccce
Confidence 3444444444444 8899999999888765321 12789999999999999999999998764 457
Q ss_pred eeeCCCCC
Q 005179 691 YLFFPSPF 698 (710)
Q Consensus 691 i~~d~se~ 698 (710)
+.++++++
T Consensus 70 ~~i~~~~~ 77 (337)
T PRK12402 70 TEFNVADF 77 (337)
T ss_pred EEechhhh
Confidence 78888765
No 297
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.3e-06 Score=96.25 Aligned_cols=48 Identities=42% Similarity=0.599 Sum_probs=41.3
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
|+||+.++..+.+++...+. ...+||+||||||||++|+++|+.++..
T Consensus 20 vVGQe~iv~~L~~~i~~~ri--------~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 20 VIHQDLAIGALQNALKSGKI--------GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred HhChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 99999999999988876542 1368999999999999999999998763
No 298
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.3e-06 Score=95.20 Aligned_cols=46 Identities=30% Similarity=0.586 Sum_probs=39.9
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
|+||+.+++.+.+++...+. ..++||+||+|||||++|+++|+.|+
T Consensus 15 liGQe~vv~~L~~a~~~~ri--------~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 15 LVGQDVLVRILRNAFTLNKI--------PQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred hcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCccHHHHHHHHHHHHc
Confidence 99999999999888766542 24899999999999999999999874
No 299
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=2.2e-05 Score=82.37 Aligned_cols=145 Identities=14% Similarity=0.128 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCCCCc-EEEcCCCChHHHHHHHHHHHHHhcCCCcc---ccCceEEEeehhhhhhccccCccHHHHHHH
Q 005179 298 EIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF---LLSKRIMSLDMGLLMAGAKERGELEARVTT 373 (710)
Q Consensus 298 ~i~~l~~~L~~~~~~nv-LL~GppG~GKT~la~~la~~l~~~~~p~~---l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~ 373 (710)
.++.+...+....-.|+ ||+|+.|+||+.+++.+++.+.+...... .....+..+|.. |... . .+.++.
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g~~i--~-vd~Ir~ 76 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----DKDL--S-KSEFLS 76 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----CCcC--C-HHHHHH
Confidence 44556666666555555 59999999999999999999855321100 001112222210 1110 1 123455
Q ss_pred HHHHHHh-----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChHHHHhhhhccHHHH
Q 005179 374 LISEIQK-----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALA 446 (710)
Q Consensus 374 ~~~~~~~-----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~~~~~~~~~d~aL~ 446 (710)
+.+.+.. ++.-|++||+++.+ ....++.|+..+++ ....+|..|+..+ .+-+++.
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m-------------~~~a~NaLLK~LEEPp~~t~~il~~~~~~-----kll~TI~ 138 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKT-------------SNSLLNALLKTIEEPPKDTYFLLTTKNIN-----KVLPTIV 138 (299)
T ss_pred HHHHhccCCcccCCceEEEEeccccc-------------CHHHHHHHHHHhhCCCCCeEEEEEeCChH-----hChHHHH
Confidence 5555421 35679999999888 55678888888885 3455555555433 5678999
Q ss_pred ccccceEecCCCHHHHHHHHH
Q 005179 447 RRFQPVLISEPSQEDAVRILL 467 (710)
Q Consensus 447 ~Rf~~I~v~~Ps~~~~~~IL~ 467 (710)
+|++.+.+.+|+.++....|.
T Consensus 139 SRc~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 139 SRCQVFNVKEPDQQKILAKLL 159 (299)
T ss_pred hCeEEEECCCCCHHHHHHHHH
Confidence 999999999999998666654
No 300
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.18 E-value=2.1e-06 Score=91.18 Aligned_cols=50 Identities=26% Similarity=0.426 Sum_probs=40.8
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
++||++.++.+...+...+..- .+..+++|+||||||||++|+++|+.+-
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~~----~~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMRQ----EALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhcC----CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 9999999999988886554321 2224799999999999999999999964
No 301
>PRK04195 replication factor C large subunit; Provisional
Probab=98.16 E-value=2.6e-06 Score=96.29 Aligned_cols=73 Identities=30% Similarity=0.344 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCccee
Q 005179 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYL 692 (710)
Q Consensus 613 ~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~ 692 (710)
.|.+..+...+.+ ++|++++++.+...+.....|. |..++||+||||||||++|++||+.+. ..++.
T Consensus 3 ~W~eKyrP~~l~d-----lvg~~~~~~~l~~~l~~~~~g~-----~~~~lLL~GppG~GKTtla~ala~el~---~~~ie 69 (482)
T PRK04195 3 PWVEKYRPKTLSD-----VVGNEKAKEQLREWIESWLKGK-----PKKALLLYGPPGVGKTSLAHALANDYG---WEVIE 69 (482)
T ss_pred CchhhcCCCCHHH-----hcCCHHHHHHHHHHHHHHhcCC-----CCCeEEEECCCCCCHHHHHHHHHHHcC---CCEEE
Confidence 3555555555666 9999999999998887665332 235899999999999999999999972 35777
Q ss_pred eCCCCC
Q 005179 693 FFPSPF 698 (710)
Q Consensus 693 ~d~se~ 698 (710)
+|.|.+
T Consensus 70 lnasd~ 75 (482)
T PRK04195 70 LNASDQ 75 (482)
T ss_pred Eccccc
Confidence 777765
No 302
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.12 E-value=4e-06 Score=93.08 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=82.4
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccc
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEi 391 (710)
-|+||+|.||||||.+.+.+++....+.... |+.--.+-+...+.-....+++...- ..+.-+++.|.+|||+
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTS---GkGsSavGLTayVtrd~dtkqlVLes----GALVLSD~GiCCIDEF 535 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTS---GKGSSAVGLTAYVTKDPDTRQLVLES----GALVLSDNGICCIDEF 535 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceeec---CCccchhcceeeEEecCccceeeeec----CcEEEcCCceEEchhh
Confidence 5899999999999999999998774432111 11100000011110011111110000 0011245678999999
Q ss_pred hhhhhCCCCCCCCCCChHhHHHhhcccccC---------------CCeEEEEccChHH--H------HhhhhccHHHHcc
Q 005179 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGR---------------GELQCIASTTQDE--H------RTQFEKDKALARR 448 (710)
Q Consensus 392 d~l~~~~~~~~~~~~~~~~~~~~L~~~l~~---------------~~v~vI~att~~~--~------~~~~~~d~aL~~R 448 (710)
|.|. ....+.|.+.|++ .+..|++++|+.+ | .+.+.+.|.|.+|
T Consensus 536 DKM~-------------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSR 602 (804)
T KOG0478|consen 536 DKMS-------------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSR 602 (804)
T ss_pred hhhh-------------HHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhh
Confidence 9992 2334555555543 2344788877532 1 2245678999999
Q ss_pred cc--ceEecCCCHHHHHHHHHHHHHHHH
Q 005179 449 FQ--PVLISEPSQEDAVRILLGLREKYE 474 (710)
Q Consensus 449 f~--~I~v~~Ps~~~~~~IL~~l~~~~~ 474 (710)
|+ -+-++.|+...-..+-.++...|.
T Consensus 603 FDLIylllD~~DE~~Dr~La~HivsLy~ 630 (804)
T KOG0478|consen 603 FDLIFLLLDKPDERSDRRLADHIVALYP 630 (804)
T ss_pred hcEEEEEecCcchhHHHHHHHHHHHhcc
Confidence 99 456688887766777777776654
No 303
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.5e-06 Score=94.82 Aligned_cols=47 Identities=36% Similarity=0.574 Sum_probs=40.3
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||+++++.+.+.+...+. ...+|||||||||||++|+++|+.++.
T Consensus 16 vvGq~~v~~~L~~~i~~~~l--------~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQGRL--------GHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hcChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 99999999999988876432 235799999999999999999999973
No 304
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.11 E-value=3.1e-06 Score=90.84 Aligned_cols=50 Identities=26% Similarity=0.408 Sum_probs=41.3
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
++||++.++.+...+...+.. +.|..++|||||||||||++|+++|+.+-
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKR----GEALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhc----CCCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 899999999998887665422 23445899999999999999999999963
No 305
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=2.9e-06 Score=95.65 Aligned_cols=48 Identities=42% Similarity=0.630 Sum_probs=42.0
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
|+||+.+++.+.+++...+. ...+||+||||||||++|+++|+.|+..
T Consensus 18 ivGq~~v~~~L~~~~~~~~l--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 18 VIGQAPVVRALSNALDQQYL--------HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred hcCCHHHHHHHHHHHHhCCC--------CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999876552 1368999999999999999999999864
No 306
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.10 E-value=3.7e-06 Score=93.43 Aligned_cols=51 Identities=27% Similarity=0.511 Sum_probs=45.4
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.++|++++++.|...++.+..|+..+.+ .++|+||||+|||+||+.||+.|
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~---IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQ---ILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCc---eEEEecCCCCCchHHHHHHHHHH
Confidence 3899999999999999888888866433 78999999999999999999986
No 307
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=4.2e-06 Score=95.36 Aligned_cols=47 Identities=38% Similarity=0.600 Sum_probs=40.4
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||+.+++.+.+.+...+. ...+||+||+|||||++|+++|+.|+.
T Consensus 15 ivGq~~i~~~L~~~i~~~r~--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 15 VVGQEHVTEPLSSALDAGRI--------NHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred hcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 99999999999998875431 135899999999999999999999984
No 308
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.10 E-value=4.8e-05 Score=83.03 Aligned_cols=176 Identities=12% Similarity=0.145 Sum_probs=101.8
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHH-----cCC-C-CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEE
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILC-----RRT-K-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~-----~~~-~-~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~ 350 (710)
..|.+++.|.+++++-=...-|..+.++|. .+. + +-+||+||+||||||.++.|+.++ +..+.
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel----------g~~~~ 139 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL----------GYQLI 139 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh----------Cceee
Confidence 467788889888888777777777777766 222 2 235788999999999999999987 33333
Q ss_pred Eee-------hhhhh-----hccccCccHHHHHHHHHHHHH------------hcCCeEEEEccchhhhhCCCCCCCCCC
Q 005179 351 SLD-------MGLLM-----AGAKERGELEARVTTLISEIQ------------KSGDVILFIDEVHTLIGSGTVGRGNKG 406 (710)
Q Consensus 351 ~ld-------~~~l~-----~g~~~~g~~e~~l~~~~~~~~------------~~~~~IL~IDEid~l~~~~~~~~~~~~ 406 (710)
+-. ...+. .+..+... -..++.++..+. ...+.+|+|||+-..+...
T Consensus 140 Ew~Npi~~~~~~~~h~~t~~~~~~~~s~-L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-------- 210 (634)
T KOG1970|consen 140 EWSNPINLKEPENLHNETSFLMFPYQSQ-LAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-------- 210 (634)
T ss_pred eecCCccccccccccccchhcccchhhH-HHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh--------
Confidence 221 00000 00011111 111222222221 1235689999998875431
Q ss_pred ChHhHHHhhcccccCCCe--EEEEcc-----ChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHH
Q 005179 407 TGLDISNLLKPSLGRGEL--QCIAST-----TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKY 473 (710)
Q Consensus 407 ~~~~~~~~L~~~l~~~~v--~vI~at-----t~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~ 473 (710)
....+.+.|..+...+.. ++|.|- +...|+. +-.|-....|...|.|.|-...-..+.|+.++...
T Consensus 211 ~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rl-f~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e 283 (634)
T KOG1970|consen 211 DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRL-FPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIE 283 (634)
T ss_pred hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhh-chhhhhhccCcceEeecCCcHHHHHHHHHHHHHHh
Confidence 133456666655555543 333321 2222222 22333444577789999988888788888777654
No 309
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=2.8e-05 Score=80.93 Aligned_cols=145 Identities=13% Similarity=0.149 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCcc--------------ccCceEEEeehhhhhh
Q 005179 295 RETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--------------LLSKRIMSLDMGLLMA 359 (710)
Q Consensus 295 r~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~--------------l~~~~v~~ld~~~l~~ 359 (710)
+...+..+...+...+-.+ .||+|| +||+++|..+|+.+.+.+.... .....++.+...
T Consensus 7 q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~---- 80 (290)
T PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQ---- 80 (290)
T ss_pred HHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCC----
Confidence 3456677777777766554 588895 7899999999999876542110 001112222110
Q ss_pred ccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--CeEEEEccChH
Q 005179 360 GAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQD 433 (710)
Q Consensus 360 g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~att~~ 433 (710)
|. .--.+.++.+...+.. ++.-|++||++|.| .....|.|+..|++. +.++|..|+..
T Consensus 81 ~~---~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-------------~~~AaNaLLKtLEEPp~~t~~iL~t~~~ 144 (290)
T PRK07276 81 GQ---VIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-------------HVNAANSLLKVIEEPQSEIYIFLLTNDE 144 (290)
T ss_pred CC---cCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-------------CHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 10 0012345666555543 34569999999999 566789998889863 46666666655
Q ss_pred HHHhhhhccHHHHccccceEecCCCHHHHHHHHH
Q 005179 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (710)
Q Consensus 434 ~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~ 467 (710)
+ .+-|++++|++.|.|+. +.++..++|.
T Consensus 145 ~-----~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 145 N-----KVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred h-----hCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 4 67899999999999965 5555444443
No 310
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.09 E-value=5.4e-06 Score=94.68 Aligned_cols=205 Identities=14% Similarity=0.187 Sum_probs=109.3
Q ss_pred CCCcccCHHHHHHHHHHHHcC------------CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh
Q 005179 289 IDPVIGRETEIQRIIQILCRR------------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (710)
Q Consensus 289 l~~liGr~~~i~~l~~~L~~~------------~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~ 356 (710)
...+.|.+...+.+.-.|... .--|+||+|.||||||.|.+.+++....+- +..+......-+..
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~v---ytsgkgss~~GLTA 361 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGV---YTSGKGSSAAGLTA 361 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceE---EEccccccccCcee
Confidence 456888887444443333221 125899999999999999999987763211 11111111111111
Q ss_pred hhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCC-------------
Q 005179 357 LMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------- 423 (710)
Q Consensus 357 l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~------------- 423 (710)
.+.-.+..|+|. +.. ..+.-++++|.+|||+|.+ .......|...|++..
T Consensus 362 av~rd~~tge~~--Lea--GALVlAD~Gv~cIDEfdKm-------------~~~dr~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 362 AVVRDKVTGEWV--LEA--GALVLADGGVCCIDEFDKM-------------NEEDRVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred EEEEccCCCeEE--EeC--CEEEEecCCEEEEEeccCC-------------ChHHHHHHHHHHHhcEeeecccceeeecc
Confidence 110011111110 000 0011245779999999988 2233445555555322
Q ss_pred --eEEEEccChHH--H------HhhhhccHHHHccccc--eEecCCCHHHHHHHHHHHHHHHHhhcCCCC----------
Q 005179 424 --LQCIASTTQDE--H------RTQFEKDKALARRFQP--VLISEPSQEDAVRILLGLREKYEAHHNCKF---------- 481 (710)
Q Consensus 424 --v~vI~att~~~--~------~~~~~~d~aL~~Rf~~--I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i---------- 481 (710)
..+++++|+.. | ...+.+++.|.+||+. +..+.|+.+.-..+..+++..+.....-..
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~ 504 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVE 504 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccc
Confidence 22566666542 1 2346778999999993 455678887777777777765531111111
Q ss_pred --CHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHH
Q 005179 482 --TLEAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 482 --~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~ 514 (710)
+.+.+...+.++++++. -.+.+.+...+....
T Consensus 505 ~~~~~~lrkYI~YAR~~v~-P~lt~ea~e~l~~~Y 538 (682)
T COG1241 505 ERDFELLRKYISYARKNVT-PVLTEEAREELEDYY 538 (682)
T ss_pred cCcHHHHHHHHHHHhccCC-cccCHHHHHHHHHHH
Confidence 34556666666666532 234556666555444
No 311
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.09 E-value=2.5e-06 Score=83.50 Aligned_cols=45 Identities=38% Similarity=0.562 Sum_probs=34.2
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
..|+||+.++.++.-+. +|. .++||+||||||||++|+.++..|=
T Consensus 3 ~dI~GQe~aKrAL~iAA----aG~-------h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAA----AGG-------HHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp CCSSSTHHHHHHHHHHH----HCC---------EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhcCcHHHHHHHHHHH----cCC-------CCeEEECCCCCCHHHHHHHHHHhCC
Confidence 35999999998876543 342 4899999999999999999998753
No 312
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=3.5e-06 Score=91.62 Aligned_cols=47 Identities=40% Similarity=0.566 Sum_probs=40.4
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||+++++.+.+++...+. ...+||+||||||||++|+++|+.++.
T Consensus 18 iiGq~~~~~~l~~~~~~~~~--------~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 18 IIGQKHIVTAISNGLSLGRI--------HHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred ccChHHHHHHHHHHHHcCCC--------CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 99999999999888865432 136799999999999999999999975
No 313
>CHL00176 ftsH cell division protein; Validated
Probab=98.08 E-value=4.1e-06 Score=96.60 Aligned_cols=62 Identities=34% Similarity=0.439 Sum_probs=44.4
Q ss_pred ccChHHHHHHHHHHHHH-------hhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 631 VIGQDEAVAAISRAVKR-------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~-------~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
|+|.+++++.+...+.. ...|...| .++||+||||||||++|++||..+ ...++.+++++|.
T Consensus 185 v~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p----~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~ 253 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSFLKKPERFTAVGAKIP----KGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFV 253 (638)
T ss_pred ccChHHHHHHHHHHHHHHhCHHHHhhccCCCC----ceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHH
Confidence 66666666666555433 33344332 589999999999999999999985 4568888877763
No 314
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.08 E-value=5.5e-06 Score=91.04 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 618 MLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 618 ~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
..+..+.+.|.+.|+|++++++.+..++... +++||+||||||||++|++||..+-+
T Consensus 9 ~~i~~l~~~l~~~i~gre~vI~lll~aalag-----------~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 9 ERISRLSSALEKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHccC-----------CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 4566788999999999999999987765432 48999999999999999999998543
No 315
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=3.7e-06 Score=92.52 Aligned_cols=48 Identities=27% Similarity=0.424 Sum_probs=41.0
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
|+||+.+++.+...+...+. ..++||+||||||||++|+++|+.++..
T Consensus 18 iiGq~~~~~~L~~~~~~~~~--------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 18 ITAQEHITRTIQNSLRMGRV--------GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ccChHHHHHHHHHHHHhCCc--------ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999888765432 1369999999999999999999999863
No 316
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=3.4e-06 Score=98.31 Aligned_cols=48 Identities=35% Similarity=0.558 Sum_probs=41.6
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
|+||+.++..+.+++...+. ...+||+||||||||++|+++|+.|+..
T Consensus 18 IIGQe~Iv~~LknaI~~~rl--------~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 18 MVGQSHVLHALTNALTQQRL--------HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred hcCcHHHHHHHHHHHHhCCC--------CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 99999999999988876542 2357999999999999999999999874
No 317
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.07 E-value=7.3e-06 Score=84.81 Aligned_cols=71 Identities=31% Similarity=0.353 Sum_probs=56.9
Q ss_pred hCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCCcch
Q 005179 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNSVKV 703 (710)
Q Consensus 628 ~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~~~~ 703 (710)
..-++||.+|-++---.++..+.|-..- .++||.||||||||.||-+||++| |.+-+++.+..||.-+...
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aG----rgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~~isgsEiYS~E~ 108 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAG----RGILIVGPPGTGKTALAMGIAREL-GEDVPFVAISGSEIYSLEV 108 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccc----cEEEEECCCCCcHHHHHHHHHHHh-CCCCCceeeccceeeeecc
Confidence 4458999999988777777777653221 389999999999999999999996 6677899999999865543
No 318
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3.6e-06 Score=94.51 Aligned_cols=61 Identities=39% Similarity=0.499 Sum_probs=46.6
Q ss_pred ccChHHHHHHHHHHH-------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAV-------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i-------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
|.|.|++++.+.+.| ++.+.|-+-| .|+||+||||||||+||||+|.+ .+-++...-.|+|
T Consensus 152 VAG~dEakeel~EiVdfLk~p~ky~~lGakiP----kGvlLvGpPGTGKTLLAkAvAgE---A~VPFf~iSGS~F 219 (596)
T COG0465 152 VAGVDEAKEELSELVDFLKNPKKYQALGAKIP----KGVLLVGPPGTGKTLLAKAVAGE---AGVPFFSISGSDF 219 (596)
T ss_pred hcCcHHHHHHHHHHHHHHhCchhhHhcccccc----cceeEecCCCCCcHHHHHHHhcc---cCCCceeccchhh
Confidence 666677776666666 5556666555 79999999999999999999988 5556666666666
No 319
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=5e-06 Score=94.20 Aligned_cols=47 Identities=43% Similarity=0.697 Sum_probs=41.0
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||+.+++.+.+++...+. ...+||+||+|||||++|+++|+.|+.
T Consensus 17 VIGQe~vv~~L~~aI~~grl--------~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 17 LVGQNHVSRALSSALERGRL--------HHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred hcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 99999999999998875432 258899999999999999999999875
No 320
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.06 E-value=3.7e-06 Score=93.55 Aligned_cols=183 Identities=17% Similarity=0.241 Sum_probs=109.7
Q ss_pred ccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhh-hhccccCccHHH
Q 005179 293 IGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL-MAGAKERGELEA 369 (710)
Q Consensus 293 iGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l-~~g~~~~g~~e~ 369 (710)
++.+..++.+...+.+ ...-+++|.|++||||-.+++++.+.-. ...|....+|..+.-++... ..|. ..|.|..
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy-~~GafTg 393 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGY-VAGAFTG 393 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhcc-Ccccccc
Confidence 3556666666555443 3456799999999999999999998775 65565555555444332111 1111 1222211
Q ss_pred -HHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC------------CeEEEEccChHHHH
Q 005179 370 -RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------ELQCIASTTQDEHR 436 (710)
Q Consensus 370 -~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~------------~v~vI~att~~~~~ 436 (710)
..+.....+.+..+..||+|||..| ...++..|+..|+++ +++||++|+.+- .
T Consensus 394 a~~kG~~g~~~~A~gGtlFldeIgd~-------------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl-~ 459 (606)
T COG3284 394 ARRKGYKGKLEQADGGTLFLDEIGDM-------------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL-A 459 (606)
T ss_pred chhccccccceecCCCccHHHHhhhc-------------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH-H
Confidence 1111222233455778999999988 677888888888765 467888887652 1
Q ss_pred hhh---hccHHHHccccceEecCCCHHHH---HHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005179 437 TQF---EKDKALARRFQPVLISEPSQEDA---VRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (710)
Q Consensus 437 ~~~---~~d~aL~~Rf~~I~v~~Ps~~~~---~~IL~~l~~~~~~~~~~~i~~~~l~~l~~l 492 (710)
... .....|.-|+....|.-|+..+| ...|..+..++. ..++.++++++..+..+
T Consensus 460 ~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~-~~~~~l~~~~~~~l~~~ 520 (606)
T COG3284 460 QLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREN-DWRLQLDDDALARLLAY 520 (606)
T ss_pred HHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHcc-CCCccCCHHHHHHHHhC
Confidence 111 11233444777666666664444 445555544443 25688999998877644
No 321
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.03 E-value=8.9e-06 Score=85.57 Aligned_cols=69 Identities=29% Similarity=0.319 Sum_probs=51.7
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCCcc
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNSVK 702 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~~~ 702 (710)
.-++||.+|-++.--.++..+.|--.- .++||.||||||||.||-++|++| |.+-+++.+..||..+-.
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aG----r~iLiaGppGtGKTAlA~~ia~eL-G~~~PF~~isgSEiyS~e 92 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAG----RAILIAGPPGTGKTALAMAIAKEL-GEDVPFVSISGSEIYSSE 92 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-----EEEEEE-TTSSHHHHHHHHHHHC-TTTS-EEEEEGGGG-BTT
T ss_pred ccccChHHHHHHHHHHHHHHhcccccC----cEEEEeCCCCCCchHHHHHHHHHh-CCCCCeeEcccceeeecc
Confidence 458999999998888777777554211 389999999999999999999995 677789999999986543
No 322
>PF14516 AAA_35: AAA-like domain
Probab=98.03 E-value=8.8e-05 Score=79.63 Aligned_cols=180 Identities=18% Similarity=0.224 Sum_probs=105.0
Q ss_pred cccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcc----------
Q 005179 292 VIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---------- 361 (710)
Q Consensus 292 liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~---------- 361 (710)
.|.|...-+.+.+.+.. .+..+.|.||..+|||+++..+.+.+... +..++.+|+..+....
T Consensus 13 Yi~R~~~e~~~~~~i~~-~G~~~~I~apRq~GKTSll~~l~~~l~~~-------~~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQ-PGSYIRIKAPRQMGKTSLLLRLLERLQQQ-------GYRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred ccCchHHHHHHHHHHhc-CCCEEEEECcccCCHHHHHHHHHHHHHHC-------CCEEEEEEeecCCCcccCCHHHHHHH
Confidence 35566555566666554 36788999999999999999999888554 4555555544331100
Q ss_pred ---------ccCcc----H------HHHHHHHHHHH--Hh-cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 362 ---------KERGE----L------EARVTTLISEI--QK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 362 ---------~~~g~----~------e~~l~~~~~~~--~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
+.... | ...+...+++. .. ..|.||+|||+|.+++... ...++...|+...
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-------~~~dF~~~LR~~~ 157 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-------IADDFFGLLRSWY 157 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc-------hHHHHHHHHHHHH
Confidence 00000 0 01222233321 22 4689999999999975321 2346777776655
Q ss_pred cC-------CCeEEEEccChHHHHhhhhcc-HHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005179 420 GR-------GELQCIASTTQDEHRTQFEKD-KALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (710)
Q Consensus 420 ~~-------~~v~vI~att~~~~~~~~~~d-~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ 491 (710)
++ ..+.+|++...+.|.. .... ..| +-...|.++..+.+|...+++. ++..+++..++.+..
T Consensus 158 ~~~~~~~~~~~L~li~~~~t~~~~~-~~~~~SPF-NIg~~i~L~~Ft~~ev~~L~~~--------~~~~~~~~~~~~l~~ 227 (331)
T PF14516_consen 158 EQRKNNPIWQKLRLILAGSTEDYII-LDINQSPF-NIGQPIELPDFTPEEVQELAQR--------YGLEFSQEQLEQLMD 227 (331)
T ss_pred HhcccCcccceEEEEEecCcccccc-cCCCCCCc-ccccceeCCCCCHHHHHHHHHh--------hhccCCHHHHHHHHH
Confidence 43 2355555544332211 1111 111 2223788898999996665442 356688888888888
Q ss_pred Hhhhh
Q 005179 492 LSARY 496 (710)
Q Consensus 492 ls~~~ 496 (710)
++.++
T Consensus 228 ~tgGh 232 (331)
T PF14516_consen 228 WTGGH 232 (331)
T ss_pred HHCCC
Confidence 87764
No 323
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.03 E-value=4.2e-05 Score=70.90 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=75.1
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhcCCC-------cc-----ccCceEEEeehhhh--h----hccccCc-------c
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVP-------VF-----LLSKRIMSLDMGLL--M----AGAKERG-------E 366 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~~~p-------~~-----l~~~~v~~ld~~~l--~----~g~~~~g-------~ 366 (710)
-.+.++|+||+||||++..++..+....+. .. ..+..++.++-..- . .+....| .
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 458999999999999999999998664211 11 11333333321110 0 0111111 2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHH
Q 005179 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALA 446 (710)
Q Consensus 367 ~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~ 446 (710)
++...-..++.+..+ -.+++||||.-|-- .+..+...+...|..++. +|++--...-. ..-..+.
T Consensus 86 le~i~~~al~rA~~~-aDvIIIDEIGpMEl----------ks~~f~~~ve~vl~~~kp-liatlHrrsr~---P~v~~ik 150 (179)
T COG1618 86 LEEIAIPALRRALEE-ADVIIIDEIGPMEL----------KSKKFREAVEEVLKSGKP-LIATLHRRSRH---PLVQRIK 150 (179)
T ss_pred HHHHhHHHHHHHhhc-CCEEEEecccchhh----------ccHHHHHHHHHHhcCCCc-EEEEEecccCC---hHHHHhh
Confidence 333333444444444 24899999988821 244566666666766655 55543221100 0113444
Q ss_pred ccccceEecCCCHHHHHHHHHHHHHHH
Q 005179 447 RRFQPVLISEPSQEDAVRILLGLREKY 473 (710)
Q Consensus 447 ~Rf~~I~v~~Ps~~~~~~IL~~l~~~~ 473 (710)
+++..+.+ .+++.|-.|+..++..+
T Consensus 151 ~~~~v~v~--lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 151 KLGGVYVF--LTPENRNRILNEILSVL 175 (179)
T ss_pred hcCCEEEE--EccchhhHHHHHHHHHh
Confidence 55554443 44444446776665543
No 324
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=5.5e-06 Score=95.54 Aligned_cols=61 Identities=30% Similarity=0.508 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 613 ~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
.|.+..+...+.+ |+||+.++..+..+++..+. ...+|||||+|||||++|+++|+.|+..
T Consensus 7 ~l~~KyRP~~f~d-----IiGQe~~v~~L~~aI~~~rl--------~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 7 ALYRKYRPKTFDD-----IVGQDHIVQTLKNIIKSNKI--------SHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred hHHHHhCCCCHHH-----hcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3444444445555 99999999999998875442 2478999999999999999999999864
No 325
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=6.1e-06 Score=93.15 Aligned_cols=47 Identities=40% Similarity=0.638 Sum_probs=40.7
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||+.++..+.++++..+. ...+||+||+|||||++|+++|+.|+.
T Consensus 18 iiGq~~~v~~L~~~i~~~rl--------~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 18 VAGQQHALNSLVHALETQKV--------HHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred hcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 99999999999988865432 236899999999999999999999985
No 326
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.00 E-value=7.8e-06 Score=82.64 Aligned_cols=123 Identities=19% Similarity=0.257 Sum_probs=74.3
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEcc
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDE 390 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDE 390 (710)
.....++||+|||||+.++.+|+.+ ++.++.++++..+. ...+.+++.-+... ++++++||
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~l----------G~~~~vfnc~~~~~--------~~~l~ril~G~~~~-GaW~cfde 92 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARAL----------GRFVVVFNCSEQMD--------YQSLSRILKGLAQS-GAWLCFDE 92 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCT----------T--EEEEETTSSS---------HHHHHHHHHHHHHH-T-EEEEET
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHh----------CCeEEEeccccccc--------HHHHHHHHHHHhhc-Cchhhhhh
Confidence 3456799999999999999999988 88899888765442 12356666655554 57999999
Q ss_pred chhhhhCCCCCCCCCCChHhHHHhh-------cccccC---------------CCeEEEEccChHHHHhhhhccHHHHcc
Q 005179 391 VHTLIGSGTVGRGNKGTGLDISNLL-------KPSLGR---------------GELQCIASTTQDEHRTQFEKDKALARR 448 (710)
Q Consensus 391 id~l~~~~~~~~~~~~~~~~~~~~L-------~~~l~~---------------~~v~vI~att~~~~~~~~~~d~aL~~R 448 (710)
+++|- .++...+ ...+.. ....+..|+|+ .|....++++.|+.-
T Consensus 93 fnrl~-------------~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np-~y~gr~~LP~nLk~l 158 (231)
T PF12774_consen 93 FNRLS-------------EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNP-GYAGRSELPENLKAL 158 (231)
T ss_dssp CCCSS-------------HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B--CCCC--S-HHHCTT
T ss_pred hhhhh-------------HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeecc-ccCCcccCCHhHHHH
Confidence 99982 2222211 111111 12335555554 455566788999999
Q ss_pred ccceEecCCCHHHHHHHH
Q 005179 449 FQPVLISEPSQEDAVRIL 466 (710)
Q Consensus 449 f~~I~v~~Ps~~~~~~IL 466 (710)
|.+|.+..||.....+++
T Consensus 159 FRpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 159 FRPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp EEEEE--S--HHHHHHHH
T ss_pred hheeEEeCCCHHHHHHHH
Confidence 999999999988755554
No 327
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=6e-06 Score=93.38 Aligned_cols=59 Identities=27% Similarity=0.429 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 614 ~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|.+..+...+.+ |+||+.+++.+.+++...+. ..++||+||+|||||++|+++|+.|+.
T Consensus 6 ~~~KyRP~~F~d-----IIGQe~iv~~L~~aI~~~rl--------~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 6 FYRKYRPHNFKQ-----IIGQELIKKILVNAILNNKL--------THAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred HHHHhCCCCHHH-----hcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444444555 99999999999888765432 137999999999999999999999975
No 328
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=6.8e-06 Score=92.89 Aligned_cols=47 Identities=38% Similarity=0.627 Sum_probs=41.9
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||+++++.+.+++...+. ...+||+||+|||||++|++||+.|+.
T Consensus 18 VIGQe~vv~~L~~al~~gRL--------pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 18 LVGQEHVVRALTHALEQQRL--------HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HcCcHHHHHHHHHHHHhCCC--------ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999876653 246899999999999999999999986
No 329
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=5.9e-06 Score=92.71 Aligned_cols=47 Identities=30% Similarity=0.407 Sum_probs=40.8
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
++||+.++..+.+++...+. ..++||+||||||||++|+++|+.+..
T Consensus 23 liGq~~vv~~L~~ai~~~ri--------~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 23 LQGQEVLVKVLSYTILNDRL--------AGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred hcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 99999999999888765442 248999999999999999999999865
No 330
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.98 E-value=8.3e-06 Score=87.15 Aligned_cols=72 Identities=31% Similarity=0.378 Sum_probs=53.4
Q ss_pred ccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCC--c
Q 005179 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVR--I 689 (710)
Q Consensus 612 ~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~--~ 689 (710)
+.|.+..+...+.+ ++|++++++.+...++... . .++||+||||||||++|+++++.+++... .
T Consensus 5 ~~w~~kyrP~~~~~-----~~g~~~~~~~l~~~i~~~~-------~--~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 5 EIWVEKYRPRTLDE-----IVGQEEIVERLKSYVKEKN-------M--PHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred CccchhhCCCcHHH-----hcCcHHHHHHHHHHHhCCC-------C--CeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 44666666556666 8899999999988775321 1 26899999999999999999999988653 4
Q ss_pred ceeeCCCC
Q 005179 690 HYLFFPSP 697 (710)
Q Consensus 690 li~~d~se 697 (710)
.+.++.+.
T Consensus 71 ~i~~~~~~ 78 (319)
T PRK00440 71 FLELNASD 78 (319)
T ss_pred eEEecccc
Confidence 45555443
No 331
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=7.2e-06 Score=83.34 Aligned_cols=46 Identities=37% Similarity=0.494 Sum_probs=35.9
Q ss_pred HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 646 KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 646 ~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
...+.|++.| .++|+|||||+|||.+|+++|..|- -+++.+-.|++
T Consensus 157 lf~rvgIk~P----kg~ll~GppGtGKTlla~~Vaa~mg---~nfl~v~ss~l 202 (388)
T KOG0651|consen 157 LFLRVGIKPP----KGLLLYGPPGTGKTLLARAVAATMG---VNFLKVVSSAL 202 (388)
T ss_pred hccccCCCCC----ceeEEeCCCCCchhHHHHHHHHhcC---CceEEeeHhhh
Confidence 4556777766 7999999999999999999999962 35565555554
No 332
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=1e-05 Score=92.49 Aligned_cols=48 Identities=35% Similarity=0.595 Sum_probs=41.4
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
.|+||+.+++.+.++++..+. ...+|||||+|||||++|+++|+.++.
T Consensus 17 ~viGq~~v~~~L~~~i~~~~~--------~hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGKI--------SHAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred hccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 399999999999999876442 236899999999999999999999874
No 333
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=7.7e-06 Score=91.16 Aligned_cols=48 Identities=38% Similarity=0.564 Sum_probs=41.6
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
|+||+.++..+.+.++..+. ..++|||||||||||++|+++|+.++..
T Consensus 19 iiGq~~~v~~L~~~i~~~~i--------~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 19 ILGQDAVVAVLKNALRFNRA--------AHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred hcCcHHHHHHHHHHHHcCCC--------ceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999888876432 2479999999999999999999999864
No 334
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.96 E-value=5.9e-05 Score=73.78 Aligned_cols=91 Identities=21% Similarity=0.303 Sum_probs=63.0
Q ss_pred HHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCc----cHHH-------
Q 005179 301 RIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG----ELEA------- 369 (710)
Q Consensus 301 ~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g----~~e~------- 369 (710)
-++..+......|.|+.|||||||||+.+-||+.+..+.. ....+++.-+|-.+-++|. ..| ++..
T Consensus 127 ~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~--~~l~kkv~IiDersEIag~-~~gvpq~~~g~R~dVld~ 203 (308)
T COG3854 127 PLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN--QFLPKKVGIIDERSEIAGC-LNGVPQHGRGRRMDVLDP 203 (308)
T ss_pred HHHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhcccc--ccCCceEEEEeccchhhcc-ccCCchhhhhhhhhhccc
Confidence 3666677777889999999999999999999998865532 2236677778866666542 222 1111
Q ss_pred --HHHHHHHHHHhcCCeEEEEccchhh
Q 005179 370 --RVTTLISEIQKSGDVILFIDEVHTL 394 (710)
Q Consensus 370 --~l~~~~~~~~~~~~~IL~IDEid~l 394 (710)
+-..++..++...|-|+++|||...
T Consensus 204 cpk~~gmmmaIrsm~PEViIvDEIGt~ 230 (308)
T COG3854 204 CPKAEGMMMAIRSMSPEVIIVDEIGTE 230 (308)
T ss_pred chHHHHHHHHHHhcCCcEEEEeccccH
Confidence 1123445566677899999999776
No 335
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.95 E-value=1e-05 Score=85.42 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 657 RPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 657 rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
+|..+++||||||||||.+|+++|+.+ +-.+|.++.+|+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL 184 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGEL 184 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHh
Confidence 334799999999999999999999995 346888887665
No 336
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=8.1e-06 Score=93.66 Aligned_cols=47 Identities=28% Similarity=0.431 Sum_probs=40.6
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||+.++..+.+++...+. ..++||+||+|||||++|+++|+.|+.
T Consensus 18 ivGQe~i~~~L~~~i~~~ri--------~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 18 ITAQEHITHTIQNSLRMDRV--------GHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred hcCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 99999999999888765442 136999999999999999999999976
No 337
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.94 E-value=5.6e-06 Score=75.85 Aligned_cols=35 Identities=34% Similarity=0.375 Sum_probs=30.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 662 MLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 662 ~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
+||+||||||||++|+.+|+.+ +..++.++++++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccc
Confidence 6899999999999999999996 3568888888774
No 338
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=9e-06 Score=93.04 Aligned_cols=47 Identities=36% Similarity=0.603 Sum_probs=41.0
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||+.++..+.+++...+. ...+||+||+|||||++|+++|+.|+-
T Consensus 18 viGQe~vv~~L~~~l~~~rl--------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 18 MVGQEHVVQALTNALTQQRL--------HHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred hcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 89999999999998876552 136899999999999999999999974
No 339
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=1e-05 Score=91.98 Aligned_cols=48 Identities=40% Similarity=0.623 Sum_probs=41.3
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
|+||+.+++.+.+++...+. ...+||+||||||||++|+++|+.|+..
T Consensus 18 ivGq~~v~~~L~~~i~~~~~--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 18 LVGQEHVVRALTNALEQQRL--------HHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred hcCcHHHHHHHHHHHHcCCC--------CEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 89999999999998876442 2468999999999999999999999763
No 340
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.91 E-value=1.2e-05 Score=87.24 Aligned_cols=48 Identities=40% Similarity=0.621 Sum_probs=40.8
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
++||+++++.+...++..+ ....+|||||||+|||++|+++|+.+++.
T Consensus 16 iig~~~~~~~l~~~~~~~~--------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 16 VIGQEHIVQTLKNAIKNGR--------IAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred ccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 8999999999998876432 12478999999999999999999999854
No 341
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.91 E-value=1.6e-05 Score=73.65 Aligned_cols=58 Identities=33% Similarity=0.519 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 633 Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
|++..+..+...+... +..+++++||||||||++++.+++.++......+.++.+++.
T Consensus 2 ~~~~~~~~i~~~~~~~---------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 2 GQEEAIEALREALELP---------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred chHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 5566666665554332 113799999999999999999999998777788888887763
No 342
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=1e-05 Score=92.58 Aligned_cols=48 Identities=35% Similarity=0.533 Sum_probs=41.6
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
|+||+.++..+.+.+...+ ...++||+||+|||||++|+++|+.|+..
T Consensus 18 IIGQe~vv~~L~~ai~~~r--------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 18 LVGQEHVVKALQNALDEGR--------LHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred HcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 9999999999999877543 22478999999999999999999998864
No 343
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=1.1e-05 Score=92.54 Aligned_cols=47 Identities=36% Similarity=0.595 Sum_probs=40.4
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||+++++.|.+.+...+. ...+||+||+|||||++|++||+.|+.
T Consensus 18 VIGQe~Vv~~L~~aL~~gRL--------~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 18 LVGQEHVVRALTHALDGGRL--------HHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred HcCcHHHHHHHHHHHhcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 99999999999988764432 236799999999999999999999875
No 344
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.89 E-value=1.5e-05 Score=77.78 Aligned_cols=71 Identities=24% Similarity=0.326 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC--CCcce
Q 005179 614 ADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS--VRIHY 691 (710)
Q Consensus 614 ~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~--~~~li 691 (710)
|-+..+...+.+ |+|.++.++.+....+-.. -| +++|.||||||||+-+.+||++|.|+ .+.++
T Consensus 17 wVeKYrP~~l~d-----IVGNe~tv~rl~via~~gn----mP-----~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 17 WVEKYRPSVLQD-----IVGNEDTVERLSVIAKEGN----MP-----NLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred HHHhhCchHHHH-----hhCCHHHHHHHHHHHHcCC----CC-----ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence 555555556666 9999999998876543321 13 89999999999999999999999994 45666
Q ss_pred eeCCCCC
Q 005179 692 LFFPSPF 698 (710)
Q Consensus 692 ~~d~se~ 698 (710)
-+|-|.-
T Consensus 83 ELNASde 89 (333)
T KOG0991|consen 83 ELNASDE 89 (333)
T ss_pred hccCccc
Confidence 6666654
No 345
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.89 E-value=0.00018 Score=75.56 Aligned_cols=160 Identities=20% Similarity=0.222 Sum_probs=88.4
Q ss_pred CCcccCHHHHHHHHHHHHcC---CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh--------
Q 005179 290 DPVIGRETEIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------- 358 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~~---~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~-------- 358 (710)
..+.+|+.+++.+...+... .+.+++|+|.+|||||.+++.+.+......+.....++-.+..-+..+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~ 85 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADK 85 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCC
Confidence 35788999999999988653 3456799999999999999999888721111111111111100011111
Q ss_pred hccccCccHHHHHHHHHHHHHh-------cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhh---cccccCCCeEEEE
Q 005179 359 AGAKERGELEARVTTLISEIQK-------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL---KPSLGRGELQCIA 428 (710)
Q Consensus 359 ~g~~~~g~~e~~l~~~~~~~~~-------~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L---~~~l~~~~v~vI~ 428 (710)
.|....+. .+.+..++....+ .....|++|++|.+-.. +..+.+.| ..++....+.+|.
T Consensus 86 dg~~~~~~-~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~----------~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 86 DGDKVEGD-AENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM----------DAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred chhhhhhH-HHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc----------chHHHHHHHHHHHHhCCCceEEEE
Confidence 01111221 1223333333322 24678999999999432 22233332 2344455555555
Q ss_pred ccChHHHHhhhhccHHHH---cccc--ceEecCCCHHHHHHHHHH
Q 005179 429 STTQDEHRTQFEKDKALA---RRFQ--PVLISEPSQEDAVRILLG 468 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~---~Rf~--~I~v~~Ps~~~~~~IL~~ 468 (710)
.....+ .... .-+. ++.++.|+.++...|+..
T Consensus 155 s~~~~e--------~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 155 SAPSCE--------KQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred eccccH--------HHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 433322 1111 1222 688899999999999875
No 346
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=1.1e-05 Score=92.43 Aligned_cols=48 Identities=38% Similarity=0.578 Sum_probs=41.6
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
|+||+.++..+.+++...+. ...+||+||+|||||++|+++|+.|+..
T Consensus 18 ivGQe~vv~~L~~~l~~~rl--------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 18 VVGQEHVLTALANALDLGRL--------HHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred hcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 99999999999988876542 1357999999999999999999999874
No 347
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.88 E-value=1.3e-05 Score=74.66 Aligned_cols=40 Identities=35% Similarity=0.358 Sum_probs=33.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCCcch
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNSVKV 703 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~~~~ 703 (710)
++||+||||||||++|+.+|+.+ ...++.+.++....+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~d 40 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEED 40 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEecccccccc
Confidence 47999999999999999999998 55788888887765544
No 348
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=1.3e-05 Score=89.92 Aligned_cols=47 Identities=45% Similarity=0.639 Sum_probs=40.7
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
++||+.++..+.++++..+. ...+|||||+|||||++|+++|+.++.
T Consensus 18 iiGq~~i~~~L~~~i~~~~i--------~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 18 VIGQEIVVRILKNAVKLQRV--------SHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred ccChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 99999999999998866442 136899999999999999999999984
No 349
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=1.3e-05 Score=94.91 Aligned_cols=47 Identities=40% Similarity=0.609 Sum_probs=40.8
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||+.+++.|.+.+...+. ...+||+||+|||||++|++||+.|+-
T Consensus 17 iiGqe~v~~~L~~~i~~~ri--------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 17 VIGQEHVTEPLSTALDSGRI--------NHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred hcCcHHHHHHHHHHHHhCCC--------CceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 99999999999998876542 136899999999999999999999973
No 350
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.87 E-value=7.6e-06 Score=100.66 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=35.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 657 RPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 657 rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
+|..|+||+||||||||+||||||.. ..-+++.+.++++-
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~e---s~VPFIsISgs~fl 1667 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATN---SYVPFITVFLNKFL 1667 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHh---cCCceEEEEHHHHh
Confidence 34479999999999999999999999 66789999999885
No 351
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.87 E-value=1.1e-05 Score=89.43 Aligned_cols=55 Identities=27% Similarity=0.463 Sum_probs=41.5
Q ss_pred ccChHHHHHH---HHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 631 VIGQDEAVAA---ISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 631 v~Gq~~a~~~---i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
++||++++.. +...+...+ ..+++|+||||||||++|++||+.+- ..++.++.+.
T Consensus 14 ~vGq~~~v~~~~~L~~~i~~~~---------~~~ilL~GppGtGKTtLA~~ia~~~~---~~~~~l~a~~ 71 (413)
T PRK13342 14 VVGQEHLLGPGKPLRRMIEAGR---------LSSMILWGPPGTGKTTLARIIAGATD---APFEALSAVT 71 (413)
T ss_pred hcCcHHHhCcchHHHHHHHcCC---------CceEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeccc
Confidence 9999998766 666654321 13899999999999999999999853 3566666553
No 352
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=1.4e-05 Score=91.03 Aligned_cols=58 Identities=38% Similarity=0.507 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 615 ~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
.+..+-..+++ |+||+.++..+.+++...+. . -.+||+||||||||++|+++|+.++.
T Consensus 7 a~KyRP~sf~d-----IiGQe~v~~~L~~ai~~~ri---~-----ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAE-----VAGQETVKAILSRAAQENRV---A-----PAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHH-----hcCCHHHHHHHHHHHHcCCC---C-----ceEEEECCCCCCHHHHHHHHHHhccc
Confidence 33334444455 89999999999988865432 1 38999999999999999999999985
No 353
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.86 E-value=1.8e-06 Score=92.50 Aligned_cols=178 Identities=16% Similarity=0.204 Sum_probs=88.1
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh-----hhhhc---cccCccHHHHHHHHHHHHHhcCC
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG-----LLMAG---AKERGELEARVTTLISEIQKSGD 383 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~-----~l~~g---~~~~g~~e~~l~~~~~~~~~~~~ 383 (710)
-|+||+|+||+|||.|.+.+++.... .++. ... .+.+. ....|+|.-.-.. +-...+
T Consensus 58 ihiLlvGdpg~gKS~ll~~~~~~~pr----------~v~~-~g~~~s~~gLta~~~~d~~~~~~~leaGa----lvlad~ 122 (331)
T PF00493_consen 58 IHILLVGDPGTGKSQLLKYVAKLAPR----------SVYT-SGKGSSAAGLTASVSRDPVTGEWVLEAGA----LVLADG 122 (331)
T ss_dssp --EEEECSCHHCHHHHHHCCCCT-SS----------EEEE-ECCGSTCCCCCEEECCCGGTSSECEEE-H----HHHCTT
T ss_pred cceeeccchhhhHHHHHHHHHhhCCc----------eEEE-CCCCcccCCccceeccccccceeEEeCCc----hhcccC
Confidence 48999999999999999987644311 1111 100 01000 0011221000001 112456
Q ss_pred eEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC---------------CeEEEEccChHHHH--------hhhh
Q 005179 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------------ELQCIASTTQDEHR--------TQFE 440 (710)
Q Consensus 384 ~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~---------------~v~vI~att~~~~~--------~~~~ 440 (710)
.|++|||++.+ ..+....|...|+++ +..|++++|+...+ ..+.
T Consensus 123 GiccIDe~dk~-------------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~ 189 (331)
T PF00493_consen 123 GICCIDEFDKM-------------KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENIN 189 (331)
T ss_dssp SEEEECTTTT---------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-
T ss_pred ceeeecccccc-------------cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcc
Confidence 79999999998 223455666666643 34478888875311 1235
Q ss_pred ccHHHHccccceE--ecCCCHHHHHHHHHHHHHHHHhhc----------CCCCCHHHHHHHHHHhhhhhcCCCCcchHHH
Q 005179 441 KDKALARRFQPVL--ISEPSQEDAVRILLGLREKYEAHH----------NCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (710)
Q Consensus 441 ~d~aL~~Rf~~I~--v~~Ps~~~~~~IL~~l~~~~~~~~----------~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ 508 (710)
+++.|.+||+-|. .+.|+.+.-..+.+++...+.... ...++.+.++..+.+++..+.- .+++.+.+
T Consensus 190 l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P-~ls~ea~~ 268 (331)
T PF00493_consen 190 LPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHP-VLSEEAKE 268 (331)
T ss_dssp S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC---EE-HHCHH
T ss_pred cchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhccc-ccCHHHHH
Confidence 6788999999433 467777777777776665443221 1246666677777777644332 34566677
Q ss_pred HHHHHHhhhh
Q 005179 509 LVDEAGSRAH 518 (710)
Q Consensus 509 ll~~a~~~~~ 518 (710)
++.......+
T Consensus 269 ~I~~~Yv~lR 278 (331)
T PF00493_consen 269 LIINYYVELR 278 (331)
T ss_dssp HHHHHHCCCC
T ss_pred HHHHHHHHhc
Confidence 7666554433
No 354
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.86 E-value=1.8e-05 Score=84.61 Aligned_cols=72 Identities=19% Similarity=0.182 Sum_probs=52.9
Q ss_pred hhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCc
Q 005179 610 QQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRI 689 (710)
Q Consensus 610 ~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~ 689 (710)
..+.|.+..+...+.+ ++||+++++.+...++..+ ....+||+||||+|||++|+++++.+. ..
T Consensus 7 ~~~~w~~kyrP~~~~~-----~~~~~~~~~~l~~~~~~~~--------~~~~lll~G~~G~GKT~la~~l~~~~~---~~ 70 (316)
T PHA02544 7 NEFMWEQKYRPSTIDE-----CILPAADKETFKSIVKKGR--------IPNMLLHSPSPGTGKTTVAKALCNEVG---AE 70 (316)
T ss_pred CCCcceeccCCCcHHH-----hcCcHHHHHHHHHHHhcCC--------CCeEEEeeCcCCCCHHHHHHHHHHHhC---cc
Confidence 3455666666666666 9999999999888776321 124667799999999999999999862 34
Q ss_pred ceeeCCCC
Q 005179 690 HYLFFPSP 697 (710)
Q Consensus 690 li~~d~se 697 (710)
++.++.++
T Consensus 71 ~~~i~~~~ 78 (316)
T PHA02544 71 VLFVNGSD 78 (316)
T ss_pred ceEeccCc
Confidence 66666665
No 355
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00012 Score=74.43 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=79.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCcccc------------CceEEEeehhhhhhccccCccHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL------------SKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~------------~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~ 378 (710)
+...||+|++|+||..+|.++|+.+.+.+...... ...++.+.. .. ..-..+.++++.+.+
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p------~~-~~I~id~ir~l~~~l 79 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFD------QK-NPIKKEDALSIINKL 79 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecC------Cc-ccCCHHHHHHHHHHH
Confidence 45579999999999999999999987643111000 011111110 00 001123345555444
Q ss_pred H-----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChHHHHhhhhccHHHHccccc
Q 005179 379 Q-----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQP 451 (710)
Q Consensus 379 ~-----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~ 451 (710)
. .++.-|++|+++|.+ ...+.|.|+..+++ .+..+|..|+..+ .+-|++++|++.
T Consensus 80 ~~~s~e~~~~KV~II~~ae~m-------------~~~AaNaLLK~LEEPp~~t~fiLit~~~~-----~lLpTI~SRCq~ 141 (261)
T PRK05818 80 NRPSVESNGKKIYIIYGIEKL-------------NKQSANSLLKLIEEPPKNTYGIFTTRNEN-----NILNTILSRCVQ 141 (261)
T ss_pred ccCchhcCCCEEEEeccHhhh-------------CHHHHHHHHHhhcCCCCCeEEEEEECChH-----hCchHhhhheee
Confidence 2 134579999999999 66788999999986 3566666666555 688999999998
Q ss_pred eEecCC
Q 005179 452 VLISEP 457 (710)
Q Consensus 452 I~v~~P 457 (710)
+.++.+
T Consensus 142 ~~~~~~ 147 (261)
T PRK05818 142 YVVLSK 147 (261)
T ss_pred eecCCh
Confidence 888776
No 356
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=1.6e-05 Score=91.84 Aligned_cols=47 Identities=40% Similarity=0.634 Sum_probs=40.4
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||+.+++.+.+.+...+. ...+|||||+|||||++|+++|+.|+.
T Consensus 18 iiGq~~~~~~L~~~i~~~~i--------~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 18 LVGQEHVVQTLRNAIAEGRV--------AHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred hcCCHHHHHHHHHHHHhCCC--------ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 99999999999888875442 136899999999999999999999874
No 357
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=1.6e-05 Score=90.69 Aligned_cols=48 Identities=33% Similarity=0.632 Sum_probs=41.6
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
|+||+.++..+.+.++..+. ...+|||||+|+|||++|+++|+.++..
T Consensus 18 iiGqe~iv~~L~~~i~~~~i--------~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 18 LEGQDFVVETLKHSIESNKI--------ANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred ccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 99999999999998875442 2369999999999999999999999863
No 358
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.84 E-value=0.00096 Score=71.45 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=59.0
Q ss_pred cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhc----------cHHHHcc-c
Q 005179 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK----------DKALARR-F 449 (710)
Q Consensus 381 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~----------d~aL~~R-f 449 (710)
..+.|+||||+|++-+ +.-.++.+.++.++.-.++++|.+..+......+.. ...+..+ |
T Consensus 171 ~~~iViiIDdLDR~~~---------~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKii 241 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSP---------EEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKII 241 (325)
T ss_pred CceEEEEEcchhcCCc---------HHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhc
Confidence 4579999999999922 224567777788888888888888877654443322 1233344 4
Q ss_pred c-ceEecCCCHHHHHHHHHHHHHHHH
Q 005179 450 Q-PVLISEPSQEDAVRILLGLREKYE 474 (710)
Q Consensus 450 ~-~I~v~~Ps~~~~~~IL~~l~~~~~ 474 (710)
+ .+.+|+|+..+....+......+.
T Consensus 242 q~~~~lP~~~~~~~~~~~~~~~~~~~ 267 (325)
T PF07693_consen 242 QVPFSLPPPSPSDLERYLNELLESLE 267 (325)
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 5 688899998888888887765554
No 359
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=1.6e-05 Score=91.13 Aligned_cols=47 Identities=34% Similarity=0.522 Sum_probs=41.3
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||+.+++.+.+++...+. ..++||+||+|||||++|+++|+.|+-
T Consensus 26 liGq~~~v~~L~~~~~~gri--------~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 26 LIGQEAMVRTLTNAFETGRI--------AQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred hcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 99999999999998875442 247999999999999999999999874
No 360
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=2.4e-05 Score=89.93 Aligned_cols=48 Identities=33% Similarity=0.502 Sum_probs=41.1
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
|+||++++..+.+.++..+ ....+|||||+|||||++|+++|+.++..
T Consensus 18 iiGq~~v~~~L~~~i~~~~--------~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 18 LTGQEHVSRTLQNAIDTGR--------VAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred ccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 9999999999998886543 12478999999999999999999999853
No 361
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.82 E-value=3.2e-05 Score=84.44 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=41.5
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
+++.++.++.+...+... .+++|+||||||||++|+.||..+.+. ....++++-+|
T Consensus 177 ~~i~e~~le~l~~~L~~~-----------~~iil~GppGtGKT~lA~~la~~l~~~-~~~~~v~~VtF 232 (459)
T PRK11331 177 LFIPETTIETILKRLTIK-----------KNIILQGPPGVGKTFVARRLAYLLTGE-KAPQRVNMVQF 232 (459)
T ss_pred ccCCHHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhcCC-cccceeeEEee
Confidence 666677777776655421 388999999999999999999998774 33555655555
No 362
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.82 E-value=9.9e-05 Score=81.72 Aligned_cols=188 Identities=14% Similarity=0.226 Sum_probs=103.1
Q ss_pred CCCcccCHHHHHHHHHHHHc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh
Q 005179 289 IDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (710)
Q Consensus 289 l~~liGr~~~i~~l~~~L~~------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~ 356 (710)
+..+.|.+....-+.-.|.. +.--|++|+|.||+|||-+.++.+.....+-+ ..|...-..-+..
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY---tsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY---TSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE---ecCcccccccceE
Confidence 45677877655555444422 12258999999999999999998876532110 0000000000000
Q ss_pred hhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--------------
Q 005179 357 LMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------- 422 (710)
Q Consensus 357 l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------- 422 (710)
-+......|+|.-.-. .+.-+++.|.+|||+|.+ ...-+-.|...|++.
T Consensus 421 aVvkD~esgdf~iEAG----ALmLADnGICCIDEFDKM-------------d~~dqvAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAG----ALMLADNGICCIDEFDKM-------------DVKDQVAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred EEEecCCCCceeeecC----cEEEccCceEEechhccc-------------ChHhHHHHHHHHHhheehheecceEEeec
Confidence 0000112222211000 112245779999999999 111123333444431
Q ss_pred -CeEEEEccChH--------HHHhhhhccHHHHcccc--ceEecCCCHHHHHHHHHHHHHHHHhh-----cCCCCCHHHH
Q 005179 423 -ELQCIASTTQD--------EHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAH-----HNCKFTLEAI 486 (710)
Q Consensus 423 -~v~vI~att~~--------~~~~~~~~d~aL~~Rf~--~I~v~~Ps~~~~~~IL~~l~~~~~~~-----~~~~i~~~~l 486 (710)
+..+|+++|+- ..+..+.+++++.+||+ -|-++.|++..-..|-+++....... ....++-+.+
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~v 563 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQV 563 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHH
Confidence 23367777753 23345678899999998 57889999888888888877653211 1124555666
Q ss_pred HHHHHHhhhh
Q 005179 487 NAAVHLSARY 496 (710)
Q Consensus 487 ~~l~~ls~~~ 496 (710)
..-+.+++.+
T Consensus 564 rkYi~yAR~~ 573 (764)
T KOG0480|consen 564 RKYIRYARNF 573 (764)
T ss_pred HHHHHHHHhc
Confidence 6666665533
No 363
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=2.2e-05 Score=88.34 Aligned_cols=48 Identities=33% Similarity=0.498 Sum_probs=41.0
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
|+||+.+++.+...++..+. ...+|||||+|||||++|+++|+.++..
T Consensus 16 iiGqe~v~~~L~~~I~~grl--------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 16 LIGQESVSKTLSLALDNNRL--------AHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred ccCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 99999999999988865431 1367999999999999999999999853
No 364
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=2.6e-05 Score=85.19 Aligned_cols=47 Identities=38% Similarity=0.622 Sum_probs=40.4
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
++||+.+++.+...++..+ ...++|||||||+|||++|+++|+.++.
T Consensus 19 iig~~~~~~~l~~~i~~~~--------~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 19 VVGQSHITNTLLNAIENNH--------LAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred cCCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 8999999999988876532 1248999999999999999999999986
No 365
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.79 E-value=9.4e-05 Score=76.48 Aligned_cols=165 Identities=13% Similarity=0.214 Sum_probs=88.0
Q ss_pred cccCHHHHHHHHH---HHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHH
Q 005179 292 VIGRETEIQRIIQ---ILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368 (710)
Q Consensus 292 liGr~~~i~~l~~---~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e 368 (710)
++--++.++.+.. +|. ..+.|.||+|.+|+||+++++..+... +..++.+.++. .-...+|.
T Consensus 10 lVlf~~ai~hi~ri~RvL~-~~~Gh~LLvG~~GsGr~sl~rLaa~i~----------~~~~~~i~~~~----~y~~~~f~ 74 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLS-QPRGHALLVGVGGSGRQSLARLAAFIC----------GYEVFQIEITK----GYSIKDFK 74 (268)
T ss_dssp ----HHHHHHHHHHHHHHC-STTEEEEEECTTTSCHHHHHHHHHHHT----------TEEEE-TTTST----TTHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHc-CCCCCeEEecCCCccHHHHHHHHHHHh----------ccceEEEEeeC----CcCHHHHH
Confidence 3444556665554 444 456899999999999999999776555 77888776432 11234677
Q ss_pred HHHHHHHHHHH-hcCCeEEEEccch-----------hhhhCCCCCCC-CCCChHhHHHhhccccc---------------
Q 005179 369 ARVTTLISEIQ-KSGDVILFIDEVH-----------TLIGSGTVGRG-NKGTGLDISNLLKPSLG--------------- 420 (710)
Q Consensus 369 ~~l~~~~~~~~-~~~~~IL~IDEid-----------~l~~~~~~~~~-~~~~~~~~~~~L~~~l~--------------- 420 (710)
+.++.++..+- ++.+.+++++|-+ .|+..|....- ..+.-..+.+.+++...
T Consensus 75 ~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F 154 (268)
T PF12780_consen 75 EDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFF 154 (268)
T ss_dssp HHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHH
Confidence 77888877664 3457888887654 23333322110 00101111222211110
Q ss_pred ----CCCeEEEEc--cChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHH
Q 005179 421 ----RGELQCIAS--TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLRE 471 (710)
Q Consensus 421 ----~~~v~vI~a--tt~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~ 471 (710)
+.++.||.+ ...+.++......|+|.+++....+.+.+.+....+-...+.
T Consensus 155 ~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~ 211 (268)
T PF12780_consen 155 IERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLS 211 (268)
T ss_dssp HHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCC
T ss_pred HHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHH
Confidence 233434433 333334445556677888777788888888776666555444
No 366
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.78 E-value=2.2e-05 Score=83.63 Aligned_cols=44 Identities=30% Similarity=0.477 Sum_probs=36.3
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
|+||+++++.+..+... .| .+++||+||||||||++||++|..|
T Consensus 10 i~Gq~~~~~~l~~~~~~--~~-------~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 10 IVGQEEMKQAMVLTAID--PG-------IGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred hCCHHHHHHHHHHHHhc--cC-------CCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 89999999987654322 12 2589999999999999999999997
No 367
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.2e-05 Score=86.85 Aligned_cols=42 Identities=40% Similarity=0.562 Sum_probs=34.5
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
|+||+.|+.++.-+ -+|- -++||+||||||||++|+-+...|
T Consensus 181 V~GQ~~AKrAleiA----AAGg-------HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 181 VKGQEQAKRALEIA----AAGG-------HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred hcCcHHHHHHHHHH----HhcC-------CcEEEecCCCCchHHhhhhhcccC
Confidence 99999999987654 3333 279999999999999999887664
No 368
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=2.6e-05 Score=90.03 Aligned_cols=48 Identities=33% Similarity=0.542 Sum_probs=41.6
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
++||++++..+.+.+...+. ..++||+||+|||||++|+++|+.|+..
T Consensus 18 liGq~~i~~~L~~~l~~~rl--------~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 18 LVGQEAIATTLKNALISNRI--------APAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ccChHHHHHHHHHHHHcCCC--------CceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 99999999999988876442 1389999999999999999999999874
No 369
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.76 E-value=4.7e-05 Score=77.40 Aligned_cols=67 Identities=30% Similarity=0.432 Sum_probs=57.9
Q ss_pred HHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCC
Q 005179 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVR 688 (710)
Q Consensus 620 l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~ 688 (710)
+..|++.|...++||.-|++.|..+++--...-+ |.||+ .+-|.|+|||||..+++.||+.+|.++.
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-p~KPL-vLSfHG~tGTGKN~Va~iiA~n~~~~Gl 139 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANPN-PRKPL-VLSFHGWTGTGKNYVAEIIAENLYRGGL 139 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-CCCCe-EEEecCCCCCchhHHHHHHHHHHHhccc
Confidence 4568888999999999999999999987765443 88988 8889999999999999999999998653
No 370
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=3.3e-05 Score=83.62 Aligned_cols=49 Identities=33% Similarity=0.506 Sum_probs=42.5
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV 687 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~ 687 (710)
|+||++++..+.+++...+. ..++||+||+|+||+++|.++|+.|+...
T Consensus 21 iiGq~~~~~~L~~~~~~~rl--------~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 21 LFGHAAAEAALLDAYRSGRL--------HHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred ccChHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999988877553 13799999999999999999999998643
No 371
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.75 E-value=2.8e-05 Score=89.75 Aligned_cols=53 Identities=42% Similarity=0.594 Sum_probs=44.7
Q ss_pred HHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 623 LEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 623 l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
+.+.|.+.|+||+++++.+..++... .+++|+||||||||++|+++|+.+...
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~~-----------~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQK-----------RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHcC-----------CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 34466777999999999988877643 278999999999999999999998776
No 372
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.74 E-value=5.4e-05 Score=81.35 Aligned_cols=66 Identities=30% Similarity=0.346 Sum_probs=52.4
Q ss_pred HHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 620 LVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 620 l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
+..+...+...++|+++++..+..++... +++||.||||||||++|+++|+.+. ..++++.+....
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~~-----------~~vll~G~PG~gKT~la~~lA~~l~---~~~~~i~~t~~l 80 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLAG-----------GHVLLEGPPGVGKTLLARALARALG---LPFVRIQCTPDL 80 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHcC-----------CCEEEECCCCccHHHHHHHHHHHhC---CCeEEEecCCCC
Confidence 34456677777999988888876665554 3899999999999999999999976 478888777653
No 373
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.72 E-value=0.00016 Score=68.53 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.6
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHh
Q 005179 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~~ 337 (710)
++|+|+||+|||+++..++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999988754
No 374
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.71 E-value=3.3e-05 Score=70.81 Aligned_cols=41 Identities=27% Similarity=0.224 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
..++|+||||||||++++.||..++.....++.++++....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 37899999999999999999999888765688888776543
No 375
>PRK06893 DNA replication initiation factor; Validated
Probab=97.70 E-value=4.6e-05 Score=77.37 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
.++||||||||||.|+.++|+++.......+.+.++
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 689999999999999999999987655555555554
No 376
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.69 E-value=6.6e-05 Score=85.58 Aligned_cols=58 Identities=29% Similarity=0.464 Sum_probs=44.3
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH-------cCCCCcceeeCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY-------FGSVRIHYLFFPSP 697 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l-------fg~~~~li~~d~se 697 (710)
++||++++..+..++ .+- .| .++|||||||||||++|+++.+.. |..+..++.+|++.
T Consensus 67 iiGqs~~i~~l~~al----~~~----~~-~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 67 IIGQEEGIKALKAAL----CGP----NP-QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred eeCcHHHHHHHHHHH----hCC----CC-ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 999999998887553 111 12 378999999999999999998752 44456789999764
No 377
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=5.3e-05 Score=80.41 Aligned_cols=51 Identities=31% Similarity=0.533 Sum_probs=44.4
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV 687 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~ 687 (710)
..|+||+++++.+..++...+. ..++||+||+|+||+++|+++|+.+++..
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl--------~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRI--------APAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCC--------CceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 3499999999999999877653 13899999999999999999999999864
No 378
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.68 E-value=7.9e-05 Score=77.30 Aligned_cols=35 Identities=31% Similarity=0.301 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.+||+||||||||++|++||+.+ +..++++++++-
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~ 57 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAE 57 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCcc
Confidence 67999999999999999999975 346788877664
No 379
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.68 E-value=4e-05 Score=79.42 Aligned_cols=69 Identities=29% Similarity=0.538 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHH---HHHHHHHhhcCCCCCCCCCeEEEEEcCC
Q 005179 592 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAA---ISRAVKRSRVGLKDPNRPTAAMLFCGPT 668 (710)
Q Consensus 592 v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~---i~~~i~~~r~gl~~p~rp~~~~Lf~GPp 668 (710)
+...++...+ .+.| ..+..+-..|.+ ++||++++.. +...|+..+ +-+++|.|||
T Consensus 114 l~~~e~R~~~---qh~P-----LaermRPktL~d-----yvGQ~hlv~q~gllrs~ieq~~---------ipSmIlWGpp 171 (554)
T KOG2028|consen 114 LAAEEIRQML---QHKP-----LAERMRPKTLDD-----YVGQSHLVGQDGLLRSLIEQNR---------IPSMILWGPP 171 (554)
T ss_pred hhhHHHHHHh---ccCC-----hhhhcCcchHHH-----hcchhhhcCcchHHHHHHHcCC---------CCceEEecCC
Confidence 4555554443 2444 234444555666 8888888854 223333333 2389999999
Q ss_pred CCcHHHHHHHHHHH
Q 005179 669 GVGKTELAKSLAAC 682 (710)
Q Consensus 669 GtGKT~lAkaLA~~ 682 (710)
|||||+||+.||..
T Consensus 172 G~GKTtlArlia~t 185 (554)
T KOG2028|consen 172 GTGKTTLARLIAST 185 (554)
T ss_pred CCchHHHHHHHHhh
Confidence 99999999999987
No 380
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.00053 Score=68.65 Aligned_cols=175 Identities=19% Similarity=0.195 Sum_probs=90.6
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee--hhhhhh--ccccCc----cHHHHHHHHHHHHHhc
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD--MGLLMA--GAKERG----ELEARVTTLISEIQKS 381 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld--~~~l~~--g~~~~g----~~e~~l~~~~~~~~~~ 381 (710)
...-+.++|+-|+|||.+.+++...+...++-......+.+... +..++. ....+. ..+..-+.+....++.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 34457899999999999999777766544322211122211110 001110 011111 1222233333334444
Q ss_pred -CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc--CCCeEEEEccChHHHHh-hhhccHHHHccccc-eEecC
Q 005179 382 -GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQDEHRT-QFEKDKALARRFQP-VLISE 456 (710)
Q Consensus 382 -~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~att~~~~~~-~~~~d~aL~~Rf~~-I~v~~ 456 (710)
.|.++++||+|.+... ..+....|...-. .+.+.++....+.-... ....-..+..|+.. |.++|
T Consensus 130 ~r~v~l~vdEah~L~~~----------~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 130 KRPVVLMVDEAHDLNDS----------ALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred CCCeEEeehhHhhhChh----------HHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 4589999999999322 2333333322222 22333443333311000 00111344558875 88999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 457 PSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 457 Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
.+.++....|+..++.-... .--++++++..+...+++
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg 237 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLP-EPLFSDDALLLIHEASQG 237 (269)
T ss_pred cChHHHHHHHHHHHhccCCC-cccCChhHHHHHHHHhcc
Confidence 99998888888877755222 223577777777666665
No 381
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.66 E-value=7e-05 Score=75.98 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.+++|+||||||||.||+++++.++.....++.++++++
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 378999999999999999999999888888888888765
No 382
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.66 E-value=4e-05 Score=89.71 Aligned_cols=54 Identities=31% Similarity=0.507 Sum_probs=38.2
Q ss_pred ccChHHHHH---HHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 631 VIGQDEAVA---AISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 631 v~Gq~~a~~---~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
++||+..+. .+...+...+ ..+++||||||||||++|+++|+.+ ...++.++.+
T Consensus 30 ~vGQe~ii~~~~~L~~~i~~~~---------~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~ 86 (725)
T PRK13341 30 FVGQDHILGEGRLLRRAIKADR---------VGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAV 86 (725)
T ss_pred hcCcHHHhhhhHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhh
Confidence 889999885 3434433211 2489999999999999999999985 2345555544
No 383
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=6.5e-05 Score=86.73 Aligned_cols=46 Identities=37% Similarity=0.683 Sum_probs=40.1
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
|+||+.+++.+.+.++..+. ...+|||||+|+|||++|+++|+.++
T Consensus 19 viGq~~~~~~L~~~i~~~~l--------~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 19 VVGQEALTTTLKNAIATNKL--------AHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred hcCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999988875432 23699999999999999999999987
No 384
>PRK12377 putative replication protein; Provisional
Probab=97.65 E-value=5.7e-05 Score=77.15 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.+++|+||||||||.||.|||+.+.......+.+.++++
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l 140 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV 140 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHH
Confidence 489999999999999999999999866666665555443
No 385
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.64 E-value=8.4e-05 Score=71.52 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=46.8
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
++|.+.++..+.+.++..-. .+ ..+|++|++||||+.+|++|=+.-...+.++|.+||+.+..
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~----~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~ 63 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD----LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE 63 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST----S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC----CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc
Confidence 46778888888777666531 11 47899999999999999999998777788999999998843
No 386
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.64 E-value=5.6e-05 Score=76.50 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
..++|+||||||||++|+++++.++.....++.++++.+.
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 4889999999999999999999988666677777776664
No 387
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=3e-05 Score=83.72 Aligned_cols=50 Identities=36% Similarity=0.627 Sum_probs=34.3
Q ss_pred cccChHHHHHHHHHHHHHh------hcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 005179 630 RVIGQDEAVAAISRAVKRS------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~------r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
.+.|.+.++..+...+.+. -.|++.| ..++||.||||+|||+|++|||.+
T Consensus 154 di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p---~rglLLfGPpgtGKtmL~~aiAsE 209 (428)
T KOG0740|consen 154 DIAGLEDAKQSLKEAVILPLLRPDLFLGLREP---VRGLLLFGPPGTGKTMLAKAIATE 209 (428)
T ss_pred CCcchhhHHHHhhhhhhhcccchHhhhccccc---cchhheecCCCCchHHHHHHHHhh
Confidence 3455555555554444332 2355544 459999999999999999999987
No 388
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.60 E-value=0.00018 Score=74.21 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=74.3
Q ss_pred ccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHH--hhcCCCCCHHHHHHHHHHhh
Q 005179 417 PSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE--AHHNCKFTLEAINAAVHLSA 494 (710)
Q Consensus 417 ~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~--~~~~~~i~~~~l~~l~~ls~ 494 (710)
+.+++|.+++||+||.++ ++++.++|++|++.+.+.+++.++...+|+..+.... ...++.+++++++.++..+.
T Consensus 2 p~vE~G~i~LIGATTENP---~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~ 78 (300)
T PRK14700 2 PYVESGKIILIGATTENP---TYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNE 78 (300)
T ss_pred CCccCCcEEEEeecCCCc---cceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcC
Confidence 678999999999999987 7899999999999999999999999999998776532 12357899999999999988
Q ss_pred hhhcCCCCcchHHHHHHHHH
Q 005179 495 RYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 495 ~~i~~r~~p~~ai~ll~~a~ 514 (710)
+-. +.++..|+.++
T Consensus 79 GDa------R~aLN~LE~a~ 92 (300)
T PRK14700 79 GDC------RKILNLLERMF 92 (300)
T ss_pred CHH------HHHHHHHHHHH
Confidence 743 35677777765
No 389
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.59 E-value=0.00011 Score=79.10 Aligned_cols=212 Identities=15% Similarity=0.201 Sum_probs=115.9
Q ss_pred CcccCHHHHHHHHHHHHc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh
Q 005179 291 PVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~ 358 (710)
.++|.++..+.|+-+|-. +..-|++|.|.||+.||.|.+.+.+....+... .-+|..-+.+. .-+
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYT-TGrGSSGVGLT--AAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYT-TGRGSSGVGLT--AAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCccccee-cCCCCCccccc--hhh
Confidence 488888777766655532 122478999999999999999988765332211 00111111111 111
Q ss_pred hccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcc-c--cc--------CCCeEEE
Q 005179 359 AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP-S--LG--------RGELQCI 427 (710)
Q Consensus 359 ~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~-~--l~--------~~~v~vI 427 (710)
......|++. +.. ..+--.++.|.+|||+|.+.+.... .+.+.+.+ . ++ +.+..++
T Consensus 420 mkDpvTgEM~--LEG--GALVLAD~GICCIDEfDKM~e~DRt---------AIHEVMEQQTISIaKAGI~TtLNAR~sIL 486 (721)
T KOG0482|consen 420 MKDPVTGEMV--LEG--GALVLADGGICCIDEFDKMDESDRT---------AIHEVMEQQTISIAKAGINTTLNARTSIL 486 (721)
T ss_pred hcCCCCCeeE--ecc--ceEEEccCceEeehhhhhhhhhhhH---------HHHHHHHhhhhhhhhhccccchhhhHHhh
Confidence 0011111110 000 0011134668899999999544211 11111110 0 00 2234466
Q ss_pred EccChHH--------HHhhhhccHHHHcccc--ceEecCCCHHHHHHHHHHHHHHHH--hhcCC---CCCHHHHHHHHHH
Q 005179 428 ASTTQDE--------HRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYE--AHHNC---KFTLEAINAAVHL 492 (710)
Q Consensus 428 ~att~~~--------~~~~~~~d~aL~~Rf~--~I~v~~Ps~~~~~~IL~~l~~~~~--~~~~~---~i~~~~l~~l~~l 492 (710)
++.|+.- ....+.++.+|.+||+ .+..+.|+.+.-..+-+++.--.. ..... .++++.++..+.+
T Consensus 487 aAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ 566 (721)
T KOG0482|consen 487 AAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISL 566 (721)
T ss_pred hhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHH
Confidence 6666531 1134677899999998 456688998877777776543221 11111 3678889999999
Q ss_pred hhhhhcCCCCcchHHHHHHHHHhhhhhh
Q 005179 493 SARYISDRYLPDKAIDLVDEAGSRAHIE 520 (710)
Q Consensus 493 s~~~i~~r~~p~~ai~ll~~a~~~~~~~ 520 (710)
+.++-+ ..|...-+-+..|....+..
T Consensus 567 ak~~~P--~vp~~l~dyi~~AYv~~Rre 592 (721)
T KOG0482|consen 567 AKRKNP--VVPEALADYITGAYVELRRE 592 (721)
T ss_pred HhhcCC--CCCHHHHHHHHHHHHHHHHH
Confidence 888755 46677777776666544443
No 390
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=4.8e-05 Score=81.70 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.|.|||||||||||.+.-|+|++|
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc
Confidence 599999999999999999999996
No 391
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=7.3e-05 Score=88.19 Aligned_cols=44 Identities=36% Similarity=0.597 Sum_probs=31.8
Q ss_pred hhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 648 SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 648 ~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
...++.+| .|+||+||||||||++|++||...-..++ =|.|+|.
T Consensus 292 ~~~~itpP----rgvL~~GppGTGkTl~araLa~~~s~~~~-kisffmr 335 (1080)
T KOG0732|consen 292 DNFNITPP----RGVLFHGPPGTGKTLMARALAAACSRGNR-KISFFMR 335 (1080)
T ss_pred hhcccCCC----cceeecCCCCCchhHHHHhhhhhhccccc-ccchhhh
Confidence 34455544 79999999999999999999999543333 4445443
No 392
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.57 E-value=0.00012 Score=79.90 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=49.5
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC------CcceeeCCCCCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV------RIHYLFFPSPFNS 700 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~------~~li~~d~se~~~ 700 (710)
+.++|.++-++.|...+...-.|-.. +.++++||||||||++++++++.+-... -..+.+|+.+...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~-----~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRP-----SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCC-----CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 34889999999998888765444222 3789999999999999999999874321 2466777766544
No 393
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.57 E-value=5.4e-05 Score=87.18 Aligned_cols=50 Identities=38% Similarity=0.577 Sum_probs=42.2
Q ss_pred HhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 626 QLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 626 ~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
.+.+.|+||+++++.+..++...+ .++|+||||||||++|+++|+.++..
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~~-----------~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQRR-----------HVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhCC-----------eEEEECCCCCcHHHHHHHHHHHcChH
Confidence 444559999999999988776432 78999999999999999999998765
No 394
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.55 E-value=0.00012 Score=70.10 Aligned_cols=49 Identities=35% Similarity=0.565 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCc
Q 005179 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRI 689 (710)
Q Consensus 633 Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~ 689 (710)
||+++++.+...++..+. ...+||+||+|+||+++|+++|+.+++....
T Consensus 1 gq~~~~~~L~~~~~~~~l--------~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL--------PHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----------SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred CcHHHHHHHHHHHHcCCc--------ceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 899999999888766543 1378999999999999999999999997653
No 395
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=9.3e-05 Score=78.94 Aligned_cols=49 Identities=29% Similarity=0.536 Sum_probs=41.0
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
.|+||+.+++.+...++..+. ...+||+||+|+|||++|+++|+.++..
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~--------~ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRF--------SHAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCC--------CceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 389999999999888754332 1378999999999999999999999864
No 396
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.54 E-value=9.5e-05 Score=75.38 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.+++|+||||||||.||.+||+++...+...+.++++++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 489999999999999999999998776666666665544
No 397
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.53 E-value=0.00019 Score=77.43 Aligned_cols=97 Identities=21% Similarity=0.239 Sum_probs=57.4
Q ss_pred CHHHHHHHHHH-HHcCCCCCcEEEcCCCChHHHHHHHHHHH--HHhcCCCccccCceEEEeehhhhhhccccCccHHHHH
Q 005179 295 RETEIQRIIQI-LCRRTKNNPILLGESGVGKTAIAEGLAIR--IVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV 371 (710)
Q Consensus 295 r~~~i~~l~~~-L~~~~~~nvLL~GppG~GKT~la~~la~~--l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l 371 (710)
....+..|... -....+.|+++.||+|||||+++.+++.. +.++ ....+..++... .
T Consensus 192 ~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-----------~f~T~a~Lf~~L------~--- 251 (449)
T TIGR02688 192 ARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG-----------GTITVAKLFYNI------S--- 251 (449)
T ss_pred hHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-----------CcCcHHHHHHHH------H---
Confidence 34444444443 12345789999999999999999999877 2222 111222332111 0
Q ss_pred HHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC
Q 005179 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG 422 (710)
Q Consensus 372 ~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 422 (710)
...+..+. ...+|+|||+..+.- ....+..+.|+.+|++|
T Consensus 252 ~~~lg~v~--~~DlLI~DEvgylp~---------~~~~~~v~imK~yMesg 291 (449)
T TIGR02688 252 TRQIGLVG--RWDVVAFDEVATLKF---------AKPKELIGILKNYMESG 291 (449)
T ss_pred HHHHhhhc--cCCEEEEEcCCCCcC---------CchHHHHHHHHHHHHhC
Confidence 12222222 245899999998621 22456788899888865
No 398
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.53 E-value=7.5e-05 Score=79.80 Aligned_cols=46 Identities=22% Similarity=0.371 Sum_probs=38.7
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||++++.++.....-.+ +|++||.||+|||||++|+++++.+-.
T Consensus 19 ivGq~~~k~al~~~~~~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 19 IVGQEEMKLALILNVIDPK---------IGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred HhChHHHHHHHHHhccCCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 9999999998876544322 379999999999999999999999864
No 399
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.52 E-value=0.00039 Score=73.35 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=47.8
Q ss_pred eEEEEccChHHHHhhhh--ccHHHHccccceEecCC-CHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005179 424 LQCIASTTQDEHRTQFE--KDKALARRFQPVLISEP-SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (710)
Q Consensus 424 v~vI~att~~~~~~~~~--~d~aL~~Rf~~I~v~~P-s~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ 491 (710)
.++|+.+|..+|..+.. ..++|.+|+..|.|+.. +..+-.+|.+.+..+.. ..+..+.|.+++.++.
T Consensus 275 ~liiAhsNe~E~~~f~~~~~~eAf~DRi~~I~VPY~L~~s~E~kIY~k~~~~s~-l~~~h~aP~~L~~aA~ 344 (358)
T PF08298_consen 275 ELIIAHSNEEEYNKFKNNKNNEAFKDRIEVIKVPYCLRVSEEVKIYEKLIGKSD-LRDAHIAPHTLEMAAR 344 (358)
T ss_pred eeEEecCCHHHHHHHhccccchhhhhheEEEeccccCCHHHHHHHHHHHhhhcc-ccccccCchHHHHHHH
Confidence 46889999999987653 56899999998999875 46666777777665321 1245677777766543
No 400
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.51 E-value=0.0012 Score=82.74 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=52.2
Q ss_pred cchhHHHhhhhhHHhhh---hcCCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 269 RASALEQFCVDLTARAS---EELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 269 ~~~~l~~~~~~l~~~~~---~~~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
+...+++...+...+.. ...+++++|++..++++...+.- ....-+-|+|++|+||||||++++..+..
T Consensus 160 E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 160 EAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred HHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 44567777777666653 23567899999999999887753 23345789999999999999999887743
No 401
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.00012 Score=78.91 Aligned_cols=48 Identities=35% Similarity=0.609 Sum_probs=41.8
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
++||++++..+..++...+. ...+||+||+|+|||++|+.+|+.|+..
T Consensus 25 l~Gh~~a~~~L~~a~~~grl--------~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 25 LFGHEEAEAFLAQAYREGKL--------HHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred ccCcHHHHHHHHHHHHcCCC--------CeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 99999999999988876542 1379999999999999999999999874
No 402
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=9.4e-05 Score=77.79 Aligned_cols=30 Identities=43% Similarity=0.702 Sum_probs=25.6
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 005179 653 KDPNRPTAAMLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 653 ~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
+.-..|...+|||||||||||+.||-||..
T Consensus 378 K~h~apfRNilfyGPPGTGKTm~ArelAr~ 407 (630)
T KOG0742|consen 378 KKHQAPFRNILFYGPPGTGKTMFARELARH 407 (630)
T ss_pred ccccchhhheeeeCCCCCCchHHHHHHHhh
Confidence 334456679999999999999999999987
No 403
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.49 E-value=0.00032 Score=81.38 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=44.9
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHc-------CCCCcceeeCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF-------GSVRIHYLFFPSPF 698 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lf-------g~~~~li~~d~se~ 698 (710)
.++||+.++..+...+.. . .| .+++|+||||||||++|+++.+..- ..+..++.+|++.+
T Consensus 155 ~iiGqs~~~~~l~~~ia~-----~---~~-~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 155 EIVGQERAIKALLAKVAS-----P---FP-QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hceeCcHHHHHHHHHHhc-----C---CC-CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 489999999987554421 1 11 3799999999999999999988762 23457888988765
No 404
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0001 Score=78.20 Aligned_cols=33 Identities=36% Similarity=0.374 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFP 695 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~ 695 (710)
+.+||.||+|+|||.||+.||+.|- -.+...|+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ld---VPfaIcDc 259 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLD---VPFAICDC 259 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhC---CCeEEecc
Confidence 4699999999999999999999962 24444444
No 405
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.00019 Score=76.85 Aligned_cols=50 Identities=36% Similarity=0.447 Sum_probs=35.5
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV 687 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~ 687 (710)
++|+++++..+...+.... +-| -.+||+||||||||++|.++|+.||+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~---~~~----halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG---RLP----HALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred cccchhHHHHHHHHHHhcC---CCC----ceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 4555566655544443221 112 1599999999999999999999999866
No 406
>PTZ00202 tuzin; Provisional
Probab=97.48 E-value=0.0017 Score=70.12 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=39.2
Q ss_pred CCCcccCHHHHHHHHHHHHcCCC---CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 289 IDPVIGRETEIQRIIQILCRRTK---NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 289 l~~liGr~~~i~~l~~~L~~~~~---~nvLL~GppG~GKT~la~~la~~l 335 (710)
...++||++++..+..+|..... .-++|+|++|+|||++++.+...+
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 66799999999999999864222 245799999999999999998766
No 407
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.44 E-value=4.4e-05 Score=73.43 Aligned_cols=133 Identities=17% Similarity=0.203 Sum_probs=61.4
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHhcCCCc--c------ccC----ceEEEe-ehhh-hhhc---------cccCcc---
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPV--F------LLS----KRIMSL-DMGL-LMAG---------AKERGE--- 366 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~~~~p~--~------l~~----~~v~~l-d~~~-l~~g---------~~~~g~--- 366 (710)
|++|+|+||+||||+++.+.+.+....++. + ..+ ..+..+ +... ..+. .++.-.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~ 80 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES 80 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence 579999999999999999999985433221 0 011 122222 0000 0000 111111
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHH
Q 005179 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALA 446 (710)
Q Consensus 367 ~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~ 446 (710)
|+......++.+. ....+++||||..|- -.+..+.+.+..+|. .+..+|++-.... ....-..+.
T Consensus 81 fe~~~~~~L~~~~-~~~~liviDEIG~mE----------l~~~~F~~~v~~~l~-s~~~vi~vv~~~~---~~~~l~~i~ 145 (168)
T PF03266_consen 81 FEEIGLPALRNAL-SSSDLIVIDEIGKME----------LKSPGFREAVEKLLD-SNKPVIGVVHKRS---DNPFLEEIK 145 (168)
T ss_dssp HHCCCCCCCHHHH-HCCHEEEE---STTC----------CC-CHHHHHHHHHHC-TTSEEEEE--SS-----SCCHHHHH
T ss_pred HHHHHHHHHHhhc-CCCCEEEEeccchhh----------hcCHHHHHHHHHHHc-CCCcEEEEEecCC---CcHHHHHHH
Confidence 1111011122211 345699999999882 224456777777776 5555777644431 112335677
Q ss_pred ccc--cceEecCCCHH
Q 005179 447 RRF--QPVLISEPSQE 460 (710)
Q Consensus 447 ~Rf--~~I~v~~Ps~~ 460 (710)
+|- ..+.+.+=+.+
T Consensus 146 ~~~~~~i~~vt~~NRd 161 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRD 161 (168)
T ss_dssp TTTTSEEEE--TTTCC
T ss_pred hCCCcEEEEeChhHHh
Confidence 774 35556554433
No 408
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.43 E-value=0.0071 Score=66.01 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=73.5
Q ss_pred cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc---C---CCeEEEEccChHHHHh---hhhccHHHHcc---
Q 005179 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---R---GELQCIASTTQDEHRT---QFEKDKALARR--- 448 (710)
Q Consensus 381 ~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---~---~~v~vI~att~~~~~~---~~~~d~aL~~R--- 448 (710)
..+.+|+|||++.+..-... .......+.|++++. . ..+.+|.+.|++-+.. -+.--++|.+|
T Consensus 238 y~GLlI~lDE~e~l~kl~~~-----~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~ 312 (416)
T PF10923_consen 238 YKGLLILLDELENLYKLRND-----QAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAE 312 (416)
T ss_pred CCceEEEEechHHHHhcCCh-----HHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhc
Confidence 45789999999999754321 112234455555443 2 3466777777765410 01112344433
Q ss_pred -------c----c-ceEecCCCHHHHHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHhhhhhcC
Q 005179 449 -------F----Q-PVLISEPSQEDAVRILLGLREKYEAHHN--CKFTLEAINAAVHLSARYISD 499 (710)
Q Consensus 449 -------f----~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~--~~i~~~~l~~l~~ls~~~i~~ 499 (710)
| . .|.+++.+.++...+++.+..-|....+ ..++++.+..+++.+.+.++.
T Consensus 313 ~~~~~~~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~~~r~G~ 377 (416)
T PF10923_consen 313 EFFADDGFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHVAGRLGG 377 (416)
T ss_pred cccccccccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhccCc
Confidence 2 2 6888888999999999999888876654 478999998888877766554
No 409
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.00015 Score=77.68 Aligned_cols=50 Identities=28% Similarity=0.402 Sum_probs=40.9
Q ss_pred cccC-hHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC
Q 005179 630 RVIG-QDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV 687 (710)
Q Consensus 630 ~v~G-q~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~ 687 (710)
+|+| |+.+++.+...+...+. ...+||+||+|+|||++|+++|+.++..+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l--------~ha~Lf~G~~G~gk~~~a~~la~~l~c~~ 56 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRL--------SHAYLFEGAKGTGKKATALWLAKSLFCLE 56 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 3666 99999999888765442 24789999999999999999999998653
No 410
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.00049 Score=75.63 Aligned_cols=138 Identities=22% Similarity=0.279 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHH
Q 005179 297 TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376 (710)
Q Consensus 297 ~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~ 376 (710)
.-+.++.+.+..... .++|+||.+|||||+++.+.+.+. ..++.++..++.... -+..+.+.....
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~----------~~~iy~~~~d~~~~~---~~l~d~~~~~~~ 89 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL----------EEIIYINFDDLRLDR---IELLDLLRAYIE 89 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC----------cceEEEEecchhcch---hhHHHHHHHHHH
Confidence 344555655554443 689999999999999977776551 113333332322111 111111222221
Q ss_pred HHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCe-EEEEccChHHHHhhhhccHHHHccccceEec
Q 005179 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL-QCIASTTQDEHRTQFEKDKALARRFQPVLIS 455 (710)
Q Consensus 377 ~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v-~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~ 455 (710)
+.......+|||||+.+ .+....++.+..++.. ++|.+++..-. ..+....|..|...+.+.
T Consensus 90 -~~~~~~~yifLDEIq~v--------------~~W~~~lk~l~d~~~~~v~itgsss~ll--~~~~~~~L~GR~~~~~l~ 152 (398)
T COG1373 90 -LKEREKSYIFLDEIQNV--------------PDWERALKYLYDRGNLDVLITGSSSSLL--SKEISESLAGRGKDLELY 152 (398)
T ss_pred -hhccCCceEEEecccCc--------------hhHHHHHHHHHccccceEEEECCchhhh--ccchhhhcCCCceeEEEC
Confidence 21124468999999998 1234556666666653 33333333221 224557788898889999
Q ss_pred CCCHHHHHHH
Q 005179 456 EPSQEDAVRI 465 (710)
Q Consensus 456 ~Ps~~~~~~I 465 (710)
|.+..+....
T Consensus 153 PlSF~Efl~~ 162 (398)
T COG1373 153 PLSFREFLKL 162 (398)
T ss_pred CCCHHHHHhh
Confidence 9998887654
No 411
>PRK08116 hypothetical protein; Validated
Probab=97.42 E-value=0.00016 Score=75.15 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
+++|+||||||||.||.++|+.+.......+.+++++
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ 152 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ 152 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 7999999999999999999999876556666666554
No 412
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00029 Score=72.26 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhcCCCCC-CCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 638 VAAISRAVKRSRVGLKDP-NRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 638 ~~~i~~~i~~~r~gl~~p-~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.....-+++.++-+.+.- -..-.-+|+.||||||||.|.||||+-|
T Consensus 155 l~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 155 LSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred HHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhh
Confidence 344445556666555422 1111368999999999999999999985
No 413
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.40 E-value=7.4e-05 Score=79.62 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.+++|+||||||||.||.+||+++...+...+-+.++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l 222 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL 222 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH
Confidence 489999999999999999999999887776666665554
No 414
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.39 E-value=0.00027 Score=71.99 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=65.0
Q ss_pred cccCHHHHHHHHHHHHc----CCCC-Cc--EEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccC
Q 005179 292 VIGRETEIQRIIQILCR----RTKN-NP--ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER 364 (710)
Q Consensus 292 liGr~~~i~~l~~~L~~----~~~~-nv--LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~ 364 (710)
++|+--..+.++..+.. ..+. ++ =|+|.+||||..+++.||+.+..+..-..+...-+-..+...-..-..|+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK 163 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH
Confidence 67777666666665543 2222 22 36799999999999999998865432211111111111111100001122
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc
Q 005179 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG 420 (710)
Q Consensus 365 g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~ 420 (710)
.++. +.+.+.+..++..++++||+|.| ...+.+.|+++|+
T Consensus 164 ~eL~---~~v~~~v~~C~rslFIFDE~DKm-------------p~gLld~lkpfLd 203 (344)
T KOG2170|consen 164 EELK---NRVRGTVQACQRSLFIFDEVDKL-------------PPGLLDVLKPFLD 203 (344)
T ss_pred HHHH---HHHHHHHHhcCCceEEechhhhc-------------CHhHHHHHhhhhc
Confidence 2222 23334455677889999999999 5557788888776
No 415
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.38 E-value=0.0002 Score=75.78 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.+++|+||||||||.||.|||+.+...+...+.+.+++|
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l 195 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEF 195 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHH
Confidence 489999999999999999999999866665665655544
No 416
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.36 E-value=0.00035 Score=77.02 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=47.7
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC--CcceeeCCCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV--RIHYLFFPSPFNS 700 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~--~~li~~d~se~~~ 700 (710)
.++|.++-++.+...+...-.|... ..++++||||||||++++.+++.+-... -..+.+|+.....
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~~~-----~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRP-----LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCC-----CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3777778888888777654333322 3689999999999999999999875432 3467777766544
No 417
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.0029 Score=63.31 Aligned_cols=149 Identities=11% Similarity=0.063 Sum_probs=95.5
Q ss_pred HHHHHHHHcCCC-CCcEEEcCCC-ChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcccc-CccHHHHHHHHHH
Q 005179 300 QRIIQILCRRTK-NNPILLGESG-VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE-RGELEARVTTLIS 376 (710)
Q Consensus 300 ~~l~~~L~~~~~-~nvLL~GppG-~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~-~g~~e~~l~~~~~ 376 (710)
..+...+...+- ...||.|+.+ +||..++..+++.+.+.+++... ...++.+....- +.+. ..--.+.++++.+
T Consensus 3 ~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~-HPD~~~I~pe~~--~~~~~~~I~IdqIReL~~ 79 (263)
T PRK06581 3 ERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLEN-NPDYHFIARETS--ATSNAKNISIEQIRKLQD 79 (263)
T ss_pred HHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCC-CCCEEEEecccc--ccccCCcccHHHHHHHHH
Confidence 345555555444 4468889997 99999999999888665433221 223333322100 0000 0011334566655
Q ss_pred HHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--CeEEEEccChHHHHhhhhccHHHHcccc
Q 005179 377 EIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQ 450 (710)
Q Consensus 377 ~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~att~~~~~~~~~~d~aL~~Rf~ 450 (710)
.+.. ++.-|++|+++|.| ...++|.|+..||+. ...+|..|+..+ .+.|.+++||+
T Consensus 80 ~l~~~p~~g~~KViII~~ae~m-------------t~~AANALLKtLEEPP~~t~fILit~~~~-----~LLpTIrSRCq 141 (263)
T PRK06581 80 FLSKTSAISGYKVAIIYSAELM-------------NLNAANSCLKILEDAPKNSYIFLITSRAA-----SIISTIRSRCF 141 (263)
T ss_pred HHhhCcccCCcEEEEEechHHh-------------CHHHHHHHHHhhcCCCCCeEEEEEeCChh-----hCchhHhhceE
Confidence 5542 34579999999999 667889999999863 455555555544 67899999999
Q ss_pred ceEecCCCHHHHHHHHHHH
Q 005179 451 PVLISEPSQEDAVRILLGL 469 (710)
Q Consensus 451 ~I~v~~Ps~~~~~~IL~~l 469 (710)
.+.+..|......+.....
T Consensus 142 ~i~~~~p~~~~~~e~~~~~ 160 (263)
T PRK06581 142 KINVRSSILHAYNELYSQF 160 (263)
T ss_pred EEeCCCCCHHHHHHHHHHh
Confidence 9999999887655555443
No 418
>PRK10536 hypothetical protein; Provisional
Probab=97.30 E-value=0.0023 Score=65.08 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=35.2
Q ss_pred CCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
..+.++......++..+.. ...++++||+|||||+|+.+++...
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3466777777777777765 3588999999999999999999854
No 419
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.30 E-value=9.4e-05 Score=71.94 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
.+++|+||||||||.||.++|+.+...+....-+++++
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~ 85 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD 85 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc
Confidence 38999999999999999999999887666555555443
No 420
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00086 Score=64.77 Aligned_cols=25 Identities=44% Similarity=0.520 Sum_probs=22.7
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~~~ 338 (710)
++|+|+||+||||+++.||+.+.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 6899999999999999999998653
No 421
>PHA02774 E1; Provisional
Probab=97.29 E-value=0.0007 Score=75.80 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCC-CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 298 EIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 298 ~i~~l~~~L~~~~-~~nvLL~GppG~GKT~la~~la~~l 335 (710)
-+..+..++.... +++++|+||||||||+++.+|++.+
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L 458 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL 458 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344455555433 5789999999999999999999987
No 422
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.29 E-value=0.00035 Score=70.55 Aligned_cols=64 Identities=28% Similarity=0.376 Sum_probs=45.6
Q ss_pred CcccChHHHHHHHH---HHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 629 KRVIGQDEAVAAIS---RAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~---~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
.-++||+.|-++-- +.++..+.+- .++||.||||||||.||-+++++| |..-.+.-+-.||..+
T Consensus 38 ~g~vGQ~~AReAagiivdlik~KkmaG-------ravLlaGppgtGKTAlAlaisqEL-G~kvPFcpmvgSEvyS 104 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIVDLIKSKKMAG-------RAVLLAGPPGTGKTALALAISQEL-GPKVPFCPMVGSEVYS 104 (456)
T ss_pred cccccchhhhhhhhHHHHHHHhhhccC-------cEEEEecCCCCchhHHHHHHHHHh-CCCCCcccccchhhhh
Confidence 34899988776644 4444443321 289999999999999999999996 5555566666666533
No 423
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.28 E-value=0.00073 Score=63.23 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
..+..+.|+||+|+|||++.+.+|..+
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 456678999999999999999999765
No 424
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.00028 Score=72.60 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.+++||||||||||.||-|||+.+...+...+-+...++
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el 144 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL 144 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 489999999999999999999999865666666665554
No 425
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.27 E-value=0.00021 Score=64.62 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 662 MLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 662 ~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
++++||||+|||++|+.||+.+ | +..++|++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~-~----~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL-G----FPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-T----CEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-C----CeEEEecc
Confidence 6899999999999999999986 3 55555554
No 426
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.27 E-value=0.00014 Score=65.59 Aligned_cols=25 Identities=48% Similarity=0.506 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
++|+.|+||+|||++|+++|+.+-.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC
Confidence 5799999999999999999999644
No 427
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.27 E-value=0.0011 Score=64.76 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.9
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHh
Q 005179 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~~ 337 (710)
++++||||+|||+++..++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999988877654
No 428
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.27 E-value=0.00073 Score=60.82 Aligned_cols=48 Identities=13% Similarity=0.299 Sum_probs=35.5
Q ss_pred CcccCHHHHHHHHHHHHc----CCC-CCcE--EEcCCCChHHHHHHHHHHHHHhc
Q 005179 291 PVIGRETEIQRIIQILCR----RTK-NNPI--LLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~----~~~-~nvL--L~GppG~GKT~la~~la~~l~~~ 338 (710)
.++|+.-..+.++..+.. ..+ .+++ |.|+||||||.+++.||+.+...
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~ 80 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKS 80 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhc
Confidence 388998777777766543 222 2333 78999999999999999997554
No 429
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.27 E-value=0.0021 Score=80.44 Aligned_cols=134 Identities=23% Similarity=0.290 Sum_probs=83.9
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe------ehhhhhh--ccccCccHHHHHHHHHHHHHhc
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL------DMGLLMA--GAKERGELEARVTTLISEIQKS 381 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l------d~~~l~~--g~~~~g~~e~~l~~~~~~~~~~ 381 (710)
++.+++|.||.|+|||.++..+|+.. +.++..+ |+-.++. -....|.+..+-..++..+..
T Consensus 439 ~~~pillqG~tssGKtsii~~la~~~----------g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~- 507 (1856)
T KOG1808|consen 439 GKFPILLQGPTSSGKTSIIKELARAT----------GKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRN- 507 (1856)
T ss_pred CCCCeEEecCcCcCchhHHHHHHHHh----------ccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHh-
Confidence 45689999999999999999999988 3333333 2333332 122344444444455555543
Q ss_pred CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC----------------CeEEEEccChH-HHHhhhhccHH
Q 005179 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------------ELQCIASTTQD-EHRTQFEKDKA 444 (710)
Q Consensus 382 ~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~----------------~v~vI~att~~-~~~~~~~~d~a 444 (710)
+.++|+|+++.. ..++.+.|..++..+ .+.+.++-++. .|.....+..+
T Consensus 508 -G~~~vlD~lnla-------------~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa 573 (1856)
T KOG1808|consen 508 -GDWIVLDELNLA-------------PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRA 573 (1856)
T ss_pred -CCEEEecccccc-------------chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhc
Confidence 568999999887 445566666555431 22233333332 14444556778
Q ss_pred HHccccceEecCCCHHHHHHHHHH
Q 005179 445 LARRFQPVLISEPSQEDAVRILLG 468 (710)
Q Consensus 445 L~~Rf~~I~v~~Ps~~~~~~IL~~ 468 (710)
|.+||..+++..-..++...|+.+
T Consensus 574 ~~~rf~e~~f~~~~e~e~~~i~~~ 597 (1856)
T KOG1808|consen 574 LRNRFIELHFDDIGEEELEEILEH 597 (1856)
T ss_pred ccccchhhhhhhcCchhhhhhhcc
Confidence 888998888877777776666654
No 430
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.27 E-value=0.00026 Score=79.02 Aligned_cols=51 Identities=27% Similarity=0.396 Sum_probs=41.7
Q ss_pred cCCCCcccCHHHHHHHHHHHHc------CCCCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 287 ELIDPVIGRETEIQRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~------~~~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
..|++++|.++.++++++.+.. ..+.-++|+||||+|||+|++.|++.+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3477899999999999998722 33455789999999999999999998743
No 431
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.26 E-value=0.00046 Score=76.22 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.3
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
-|+||+|.||||||.+.+.+++..
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s 506 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTS 506 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcC
Confidence 579999999999999999887654
No 432
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.26 E-value=0.00028 Score=75.47 Aligned_cols=45 Identities=29% Similarity=0.459 Sum_probs=37.0
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.|+||++++.++..++--.. ++++|+.||||+|||+++++++..+
T Consensus 5 ~ivgq~~~~~al~~~~~~~~---------~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPK---------IGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCCC---------CCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 48999999988755432211 3799999999999999999999998
No 433
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.24 E-value=0.0004 Score=81.09 Aligned_cols=36 Identities=36% Similarity=0.477 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.++||+||||||||++|+++|..+ ...++.++.+++
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~ 221 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDF 221 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHh
Confidence 579999999999999999999984 346777777665
No 434
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.24 E-value=0.0019 Score=66.24 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=24.8
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
..+..++|+||+|+|||++++.+++.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 45667999999999999999999987743
No 435
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.24 E-value=0.0005 Score=74.25 Aligned_cols=130 Identities=17% Similarity=0.167 Sum_probs=66.0
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee-hhhhhhc-cccCccHHHHHHHHHHHHHhcCCeEE
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD-MGLLMAG-AKERGELEARVTTLISEIQKSGDVIL 386 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld-~~~l~~g-~~~~g~~e~~l~~~~~~~~~~~~~IL 386 (710)
..+.+++|+|++|+|||+|+-.+...+.-. ...++-.-. +..+... ....+. ..-+..+.+++... ..||
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~------~k~R~HFh~Fm~~vh~~l~~~~~~-~~~l~~va~~l~~~-~~lL 131 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIK------RKRRVHFHEFMLDVHSRLHQLRGQ-DDPLPQVADELAKE-SRLL 131 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcc------ccccccccHHHHHHHHHHHHHhCC-CccHHHHHHHHHhc-CCEE
Confidence 356889999999999999999988776321 111111110 0000000 000000 01133344444332 3499
Q ss_pred EEccchhhhhCCCCCCCCCCChHhH-HHhhcccccCCCeEEEEccChHHHHhhh---------hccHHHHccccceEecC
Q 005179 387 FIDEVHTLIGSGTVGRGNKGTGLDI-SNLLKPSLGRGELQCIASTTQDEHRTQF---------EKDKALARRFQPVLISE 456 (710)
Q Consensus 387 ~IDEid~l~~~~~~~~~~~~~~~~~-~~~L~~~l~~~~v~vI~att~~~~~~~~---------~~d~aL~~Rf~~I~v~~ 456 (710)
++||++.-- -++.-+ ..+|..++ +..+++|+|+|.++-.-+. ..-..|.++|.++.+..
T Consensus 132 cfDEF~V~D----------iaDAmil~rLf~~l~-~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~ 200 (362)
T PF03969_consen 132 CFDEFQVTD----------IADAMILKRLFEALF-KRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDG 200 (362)
T ss_pred EEeeeeccc----------hhHHHHHHHHHHHHH-HCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecC
Confidence 999998651 112222 33333334 5668888888865421110 01134555777777766
Q ss_pred C
Q 005179 457 P 457 (710)
Q Consensus 457 P 457 (710)
+
T Consensus 201 ~ 201 (362)
T PF03969_consen 201 G 201 (362)
T ss_pred C
Confidence 5
No 436
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.23 E-value=0.00029 Score=63.62 Aligned_cols=31 Identities=35% Similarity=0.553 Sum_probs=26.1
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
++|+|+||+||||+++.|++.+ +..++.+|-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~----------~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL----------GFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH----------TCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH----------CCeEEEecc
Confidence 6899999999999999999998 666665543
No 437
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.00017 Score=80.31 Aligned_cols=47 Identities=43% Similarity=0.699 Sum_probs=41.8
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
|+||+.++.++.+++...|.. -++||.||-|||||++||.+|+.|-=
T Consensus 18 vvGQe~v~~~L~nal~~~ri~--------hAYlfsG~RGvGKTt~Ari~AkalNC 64 (515)
T COG2812 18 VVGQEHVVKTLSNALENGRIA--------HAYLFSGPRGVGKTTIARILAKALNC 64 (515)
T ss_pred hcccHHHHHHHHHHHHhCcch--------hhhhhcCCCCcCchhHHHHHHHHhcC
Confidence 899999999999999887742 38999999999999999999999743
No 438
>PRK08181 transposase; Validated
Probab=97.23 E-value=0.00016 Score=74.83 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
+++|+||||||||.||.++|+.+...+...+.+.+++
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~ 144 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD 144 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHH
Confidence 7999999999999999999998876665555555444
No 439
>PRK04296 thymidine kinase; Provisional
Probab=97.23 E-value=0.00064 Score=66.93 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.4
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~~~ 338 (710)
.+++||+|+||||++..++.++...
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~ 29 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER 29 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc
Confidence 5789999999999999998887543
No 440
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.21 E-value=0.0004 Score=79.87 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=48.3
Q ss_pred ccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 612 ITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 612 ~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
..|.+..+...+++ ++||++.++.|...+.....+. .|-..++|+||||||||+++++||+.+
T Consensus 72 ~pW~eKyrP~~lde-----l~~~~~ki~~l~~~l~~~~~~~----~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 72 EPWVEKYKPETQHE-----LAVHKKKIEEVETWLKAQVLEN----APKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CchHHHhCCCCHHH-----hcCcHHHHHHHHHHHHhccccc----CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35777766667777 9999999998887776543322 222358999999999999999999885
No 441
>PHA02244 ATPase-like protein
Probab=97.21 E-value=0.0007 Score=72.24 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=37.2
Q ss_pred hhCcccChHHHHHHHHHHH-HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeC
Q 005179 627 LKKRVIGQDEAVAAISRAV-KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFF 694 (710)
Q Consensus 627 L~~~v~Gq~~a~~~i~~~i-~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d 694 (710)
+....+|...........+ +....+. .+||+||||||||++|++||..+ ...+++++
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~~--------PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In 151 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNANI--------PVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMN 151 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcCC--------CEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 3344566666665444433 3333322 57999999999999999999984 23455554
No 442
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.20 E-value=0.00045 Score=72.82 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=30.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
+++||.||||||||++|+.||+.|- ..++++++++-.
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~---~~~~rV~~~~~l 101 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLN---WPCVRVNLDSHV 101 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHC---CCeEEEEecCCC
Confidence 3789999999999999999999963 467888776653
No 443
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.19 E-value=0.00051 Score=78.88 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=52.7
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
..++|+..++..+...++.... . ...+|++|++|||||++|++|.......+..++.+||+.+.
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~-~------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVAR-S------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhC-c------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3488999999888887766531 1 13689999999999999999999987778899999998774
No 444
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.19 E-value=0.00059 Score=68.50 Aligned_cols=68 Identities=22% Similarity=0.295 Sum_probs=53.7
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCCcch
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNSVKV 703 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~~~~ 703 (710)
++|.+..++.|..-....-.|. |..++||+|+.|||||.++|++...+.+.+-.+|-++-..+.+.+.
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~-----pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~ 96 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGL-----PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPE 96 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCC-----CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHH
Confidence 7778888888776666665554 3458999999999999999999999988888888887666655443
No 445
>PRK06526 transposase; Provisional
Probab=97.17 E-value=0.00015 Score=74.49 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFP 695 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~ 695 (710)
+++|+||||||||.||.+|+..+...+.....+.+
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 79999999999999999999998765554433333
No 446
>PRK13695 putative NTPase; Provisional
Probab=97.16 E-value=0.0026 Score=61.62 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.8
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
+++|+|++|+||||+++.++..+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999887653
No 447
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.16 E-value=0.0048 Score=75.71 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=31.1
Q ss_pred hcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHH
Q 005179 286 EELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIR 334 (710)
Q Consensus 286 ~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~ 334 (710)
|..-..+|-|...++++... ...+-++|+||+|.||||++...+..
T Consensus 10 p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~ 55 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAG 55 (903)
T ss_pred CCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 33344567777666555432 22345789999999999999887753
No 448
>PRK08118 topology modulation protein; Reviewed
Probab=97.15 E-value=0.00087 Score=64.51 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=21.8
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
.++++|+||+||||+++.|++.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998
No 449
>PRK05642 DNA replication initiation factor; Validated
Probab=97.11 E-value=0.00063 Score=69.32 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
..++||||+|||||.|++++++++.......+-+++.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 368999999999999999999987755556666666555
No 450
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.11 E-value=0.0013 Score=70.52 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=25.4
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l~~~ 338 (710)
..+.-.+|+||||||||+|++.|++.+...
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 345668999999999999999999988553
No 451
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.09 E-value=0.0041 Score=61.52 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=26.0
Q ss_pred HHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 301 RIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 301 ~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
.+..++.. ..+-.+|.|+||||||+++..+...+..
T Consensus 9 a~~~~l~~-~~~~~~l~G~aGtGKT~~l~~~~~~~~~ 44 (196)
T PF13604_consen 9 AVRAILTS-GDRVSVLQGPAGTGKTTLLKALAEALEA 44 (196)
T ss_dssp HHHHHHHC-TCSEEEEEESTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCeEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 33334433 3345678899999999999999888755
No 452
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.09 E-value=0.0011 Score=66.30 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=47.1
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhh-----hh--ccc--------------cCccHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL-----MA--GAK--------------ERGELEA 369 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l-----~~--g~~--------------~~g~~e~ 369 (710)
+.-++|+||||+|||+++..++...... +..+++++...+ .. ... ...+...
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~-------g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ-------GKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHH
Confidence 3446899999999999999988776432 345555554321 00 000 0011122
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhhhh
Q 005179 370 RVTTLISEIQKSGDVILFIDEVHTLIG 396 (710)
Q Consensus 370 ~l~~~~~~~~~~~~~IL~IDEid~l~~ 396 (710)
.+..+...+....+.+|+||-+..+..
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 234444444445677999999998864
No 453
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.08 E-value=0.0006 Score=76.99 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.-+||+||||||||+++++||++|
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 378899999999999999999996
No 454
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.07 E-value=0.00038 Score=61.69 Aligned_cols=24 Identities=42% Similarity=0.708 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 662 MLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 662 ~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
+.||||||||||.+|+.||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999988763
No 455
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.06 E-value=0.018 Score=69.61 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=81.7
Q ss_pred CCCCCcEEEcCCCChHHHHHH-HHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHH--------
Q 005179 309 RTKNNPILLGESGVGKTAIAE-GLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ-------- 379 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~-~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~-------- 379 (710)
...+.++++||||+|||.+.. +|-.+. ...+..++.+.-. ..+..+..+-++..
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~----------~~ev~~~Nfs~~t-------~T~s~ls~Ler~t~yy~~tg~~ 1554 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSEL----------ITEVKYFNFSTCT-------MTPSKLSVLERETEYYPNTGVV 1554 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhh----------heeeeEEeecccc-------CCHHHHHHHHhhceeeccCCeE
Confidence 456789999999999999754 343333 3455555432111 01111221111111
Q ss_pred ----h--cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--------------CCeEEEEccChHHHHhhh
Q 005179 380 ----K--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--------------GELQCIASTTQDEHRTQF 439 (710)
Q Consensus 380 ----~--~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--------------~~v~vI~att~~~~~~~~ 439 (710)
+ -...|||.|||+ | +.+.. -...++.-+|++++++ .++.+.|++|+.....-.
T Consensus 1555 ~l~PK~~vK~lVLFcDeIn-L-p~~~~-----y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv 1627 (3164)
T COG5245 1555 RLYPKPVVKDLVLFCDEIN-L-PYGFE-----YYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRV 1627 (3164)
T ss_pred EEccCcchhheEEEeeccC-C-ccccc-----cCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccC
Confidence 0 124689999998 3 22211 2233445566666664 257788999987644444
Q ss_pred hccHHHHccccceEecCCCHHHHHHHHHHHHH
Q 005179 440 EKDKALARRFQPVLISEPSQEDAVRILLGLRE 471 (710)
Q Consensus 440 ~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~ 471 (710)
.....|.|+-..|.+..|.......|.+.+..
T Consensus 1628 ~~~eRf~r~~v~vf~~ype~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1628 KYYERFIRKPVFVFCCYPELASLRNIYEAVLM 1659 (3164)
T ss_pred ccHHHHhcCceEEEecCcchhhHHHHHHHHHH
Confidence 45566666655788899998888888876544
No 456
>PRK08727 hypothetical protein; Validated
Probab=97.06 E-value=0.00087 Score=68.27 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.++|+||||||||.|+.+++..+...+...+.+.+.++
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 58999999999999999999998876666666666554
No 457
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.06 E-value=0.00075 Score=68.83 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFF 694 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d 694 (710)
.++||||||||||.|+.++++.+........-+.
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 7899999999999999999998764433333333
No 458
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.05 E-value=0.0004 Score=82.15 Aligned_cols=189 Identities=17% Similarity=0.251 Sum_probs=107.4
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcC---C------------CC-CcEEEcCCCChHHHHHHHHHHHHHhcCCCc
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRR---T------------KN-NPILLGESGVGKTAIAEGLAIRIVQAEVPV 342 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~---~------------~~-nvLL~GppG~GKT~la~~la~~l~~~~~p~ 342 (710)
-|++.+++.....+.|.......+...|... . .. -++++||||+|||+.++..+..+
T Consensus 309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~------- 381 (871)
T KOG1968|consen 309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL------- 381 (871)
T ss_pred ccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-------
Confidence 4555556655555666555555555554332 0 01 25899999999999999999988
Q ss_pred cccCceEEEeehhhhhhccccC---ccHH--HHHHHHH---HH--HHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHH
Q 005179 343 FLLSKRIMSLDMGLLMAGAKER---GELE--ARVTTLI---SE--IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDIS 412 (710)
Q Consensus 343 ~l~~~~v~~ld~~~l~~g~~~~---g~~e--~~l~~~~---~~--~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~ 412 (710)
+..+++.|.+....+.... +++. ..+...+ .. .......||++||+|-+.+ +.. ++-..+.
T Consensus 382 ---g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dR-----g~v~~l~ 452 (871)
T KOG1968|consen 382 ---GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDR-----GGVSKLS 452 (871)
T ss_pred ---ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhh-----hhHHHHH
Confidence 7788887765443211100 0000 0011111 00 0012345899999999966 211 1122222
Q ss_pred HhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005179 413 NLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (710)
Q Consensus 413 ~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~l 492 (710)
.+ +..-...+|.++|.-. +.....+.+-+..+.|..|+.+.+..-+..++. ..++.++++.++.++.+
T Consensus 453 ~l----~~ks~~Piv~~cndr~----~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~----se~~ki~~~~l~~~s~~ 520 (871)
T KOG1968|consen 453 SL----CKKSSRPLVCTCNDRN----LPKSRALSRACSDLRFSKPSSELIRSRIMSICK----SEGIKISDDVLEEISKL 520 (871)
T ss_pred HH----HHhccCCeEEEecCCC----CccccchhhhcceeeecCCcHHHHHhhhhhhhc----ccceecCcHHHHHHHHh
Confidence 22 2233334555555432 112234444444699999999987777766655 44678999999988888
Q ss_pred hhh
Q 005179 493 SAR 495 (710)
Q Consensus 493 s~~ 495 (710)
+.+
T Consensus 521 ~~~ 523 (871)
T KOG1968|consen 521 SGG 523 (871)
T ss_pred ccc
Confidence 754
No 459
>PHA00729 NTP-binding motif containing protein
Probab=97.05 E-value=0.00035 Score=69.82 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
.++++||||||||+||.+||+.+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999864
No 460
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.04 E-value=0.00041 Score=67.53 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=40.3
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
++|.++.++.+...+. ...+-. + ..++++||+|+|||.+.+++...+-......+.++++..
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~~~----~-~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQSGS----P-RNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS----------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHHcCC----C-cEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6788888888888776 222111 1 389999999999999999998887665445677777666
No 461
>PRK06921 hypothetical protein; Provisional
Probab=97.03 E-value=0.00061 Score=70.69 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCC-CCcceeeCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGS-VRIHYLFFP 695 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~-~~~li~~d~ 695 (710)
.+++|+||||||||.||.+||+.+... ....+-+..
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 489999999999999999999998764 444444443
No 462
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.02 E-value=0.00044 Score=64.37 Aligned_cols=22 Identities=50% Similarity=0.955 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 005179 662 MLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 662 ~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
++++||||+|||++|+.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999999763
No 463
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.00 E-value=0.00062 Score=79.42 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=36.4
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.|+||+.++..+..+..-.+ ++++||.||||||||++|++|++.+
T Consensus 5 ~ivGq~~~~~al~~~av~~~---------~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDPR---------IGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred hhcChHHHHHHHHHHhhCCC---------CCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 49999999977754433221 2689999999999999999999997
No 464
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.00 E-value=0.00083 Score=67.20 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.3
Q ss_pred CCCCcEEEcCCCChHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLA 332 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la 332 (710)
.+..+||||+||+|||++|+.++
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 35669999999999999999885
No 465
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.98 E-value=0.0025 Score=66.03 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=45.8
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh-hhhh---hccc--cCcc----H--HHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM-GLLM---AGAK--ERGE----L--EARVTTLISEI 378 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~-~~l~---~g~~--~~g~----~--e~~l~~~~~~~ 378 (710)
..|++|+||+|+||||+++.++..+........+.+..+..+|- ..+. .+.. ..+. + ..+...++..+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i 190 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLI 190 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHH
Confidence 36899999999999999999998874332222233445544431 1211 0100 0000 0 01122344445
Q ss_pred HhcCCeEEEEccc
Q 005179 379 QKSGDVILFIDEV 391 (710)
Q Consensus 379 ~~~~~~IL~IDEi 391 (710)
....|.++++||+
T Consensus 191 ~~~~P~villDE~ 203 (270)
T TIGR02858 191 RSMSPDVIVVDEI 203 (270)
T ss_pred HhCCCCEEEEeCC
Confidence 5567889999996
No 466
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.96 E-value=0.0012 Score=65.32 Aligned_cols=99 Identities=28% Similarity=0.398 Sum_probs=59.0
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccch
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVH 392 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid 392 (710)
-++|+|+.|+|||++++.|...... +. +. .....++.. . +. ...|+.+||++
T Consensus 54 ~lvl~G~QG~GKStf~~~L~~~~~~---------------d~--~~--~~~~kd~~~---~----l~--~~~iveldEl~ 105 (198)
T PF05272_consen 54 VLVLVGKQGIGKSTFFRKLGPEYFS---------------DS--IN--DFDDKDFLE---Q----LQ--GKWIVELDELD 105 (198)
T ss_pred eeeEecCCcccHHHHHHHHhHHhcc---------------Cc--cc--cCCCcHHHH---H----HH--HhHheeHHHHh
Confidence 4789999999999999998654311 10 00 001112211 1 11 13588899998
Q ss_pred hhhhCCCCCCCCCCChHhHHHhhcccccC-----------------CCeEEEEccChHHHHhhhhccHHHHccccceEec
Q 005179 393 TLIGSGTVGRGNKGTGLDISNLLKPSLGR-----------------GELQCIASTTQDEHRTQFEKDKALARRFQPVLIS 455 (710)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~L~~~l~~-----------------~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~ 455 (710)
.+..+ -.+.||.++.+ ...++|||||..+ +-.|+.=.|||-.|.+.
T Consensus 106 ~~~k~-------------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~----~L~D~TGnRRf~~v~v~ 168 (198)
T PF05272_consen 106 GLSKK-------------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDD----FLKDPTGNRRFWPVEVS 168 (198)
T ss_pred hcchh-------------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcc----eeeCCCCCeEEEEEEEc
Confidence 87311 12344444331 2456889999875 34577777899877776
Q ss_pred C
Q 005179 456 E 456 (710)
Q Consensus 456 ~ 456 (710)
.
T Consensus 169 ~ 169 (198)
T PF05272_consen 169 K 169 (198)
T ss_pred C
Confidence 6
No 467
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.96 E-value=0.00064 Score=63.20 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=42.8
Q ss_pred cChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 632 IGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 632 ~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
+|...++..+...++.... .+ ..+|++|++||||+.+|++|...-......++..++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~-~~------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~ 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK-SS------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASL 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC-SS------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCT
T ss_pred CCCCHHHHHHHHHHHHHhC-CC------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhC
Confidence 4566677777777766541 11 368999999999999999999987776677777776654
No 468
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.95 E-value=0.0064 Score=67.29 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=31.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 659 TAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 659 ~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
...++|+||||+|||+++..||..|-..+.....+++..|
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 3589999999999999999999887644455666666655
No 469
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.95 E-value=0.00081 Score=66.05 Aligned_cols=27 Identities=48% Similarity=0.692 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
..+|||||+|+|||++|+++|+.+++.
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 479999999999999999999999874
No 470
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.93 E-value=0.0026 Score=66.25 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=43.1
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee-hhhhhhc--------c-ccCccHHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD-MGLLMAG--------A-KERGELEARVTTLISEIQ 379 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld-~~~l~~g--------~-~~~g~~e~~l~~~~~~~~ 379 (710)
.+.++++.|++|+||||++.++...+... ..+++.+. ..++... . ..... +..++..+-
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~-------~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~----~~~~l~~~L 194 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPE-------DERIVTIEDPPELRLPGPNQIQIQTRRDEIS----YEDLLKSAL 194 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTT-------TSEEEEEESSS-S--SCSSEEEEEEETTTBS----HHHHHHHHT
T ss_pred cceEEEEECCCccccchHHHHHhhhcccc-------ccceEEeccccceeecccceEEEEeecCccc----HHHHHHHHh
Confidence 57899999999999999999999887543 12222221 1111100 0 11223 344555555
Q ss_pred hcCCeEEEEccchhh
Q 005179 380 KSGDVILFIDEVHTL 394 (710)
Q Consensus 380 ~~~~~IL~IDEid~l 394 (710)
...|.+++|+|+-.-
T Consensus 195 R~~pD~iiigEiR~~ 209 (270)
T PF00437_consen 195 RQDPDVIIIGEIRDP 209 (270)
T ss_dssp TS--SEEEESCE-SC
T ss_pred cCCCCcccccccCCH
Confidence 567889999998543
No 471
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.93 E-value=0.001 Score=67.19 Aligned_cols=152 Identities=20% Similarity=0.296 Sum_probs=77.5
Q ss_pred cCHHHHHHHHHHHH---cCCCCCcEEEcCCCChHHHHHHHHHHHHH-hcCCCccccCceEEEeehhhhhhc-------cc
Q 005179 294 GRETEIQRIIQILC---RRTKNNPILLGESGVGKTAIAEGLAIRIV-QAEVPVFLLSKRIMSLDMGLLMAG-------AK 362 (710)
Q Consensus 294 Gr~~~i~~l~~~L~---~~~~~nvLL~GppG~GKT~la~~la~~l~-~~~~p~~l~~~~v~~ld~~~l~~g-------~~ 362 (710)
-+....+++++.+. .+...++||.||.|.||+.|++.+-..-. ..+ ..-++++++|..+... ..
T Consensus 188 trnp~fnrmieqierva~rsr~p~ll~gptgagksflarriyelk~arhq-----~sg~fvevncatlrgd~amsalfgh 262 (531)
T COG4650 188 TRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQ-----FSGAFVEVNCATLRGDTAMSALFGH 262 (531)
T ss_pred ccChHHHHHHHHHHHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHh-----cCCceEEEeeeeecCchHHHHHHhh
Confidence 34455555554433 35567899999999999999998764321 111 1334555555433211 11
Q ss_pred cCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC-------------CCeEEEEc
Q 005179 363 ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR-------------GELQCIAS 429 (710)
Q Consensus 363 ~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~-------------~~v~vI~a 429 (710)
.+|.|...-..--..++..++.+||+|||..| +.+-+.+|+..++. .++++|+-
T Consensus 263 vkgaftga~~~r~gllrsadggmlfldeigel-------------gadeqamllkaieekrf~pfgsdr~v~sdfqliag 329 (531)
T COG4650 263 VKGAFTGARESREGLLRSADGGMLFLDEIGEL-------------GADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAG 329 (531)
T ss_pred hccccccchhhhhhhhccCCCceEehHhhhhc-------------CccHHHHHHHHHHhhccCCCCCccccccchHHhhh
Confidence 11211110011111223456789999999988 23334455444442 24556655
Q ss_pred cChHHHHhhhh---ccHHHHccccceEecCCCHHHHHH
Q 005179 430 TTQDEHRTQFE---KDKALARRFQPVLISEPSQEDAVR 464 (710)
Q Consensus 430 tt~~~~~~~~~---~d~aL~~Rf~~I~v~~Ps~~~~~~ 464 (710)
|..+ .++... ....|..|+....+..|-..+|.+
T Consensus 330 tvrd-lrq~vaeg~fredl~arinlwtf~lpgl~qr~e 366 (531)
T COG4650 330 TVRD-LRQLVAEGKFREDLYARINLWTFTLPGLRQRQE 366 (531)
T ss_pred hHHH-HHHHHhccchHHHHHHhhheeeeeccccccCcc
Confidence 4432 222111 123444466656666676555444
No 472
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.92 E-value=0.001 Score=72.25 Aligned_cols=80 Identities=16% Similarity=0.313 Sum_probs=48.3
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh---------ccccCc---cHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA---------GAKERG---ELEARVTTLISEI 378 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~---------g~~~~g---~~e~~l~~~~~~~ 378 (710)
+.-++|+|+||+|||+++..++..+... +.++++++...... +..... ..+..+..+++.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~-------g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR-------GGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc-------CCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 3457899999999999999999877543 23444443211100 000000 0011244555556
Q ss_pred HhcCCeEEEEccchhhhhC
Q 005179 379 QKSGDVILFIDEVHTLIGS 397 (710)
Q Consensus 379 ~~~~~~IL~IDEid~l~~~ 397 (710)
...++.+|+||+++.+...
T Consensus 155 ~~~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 155 EELKPDLVIIDSIQTVYSS 173 (372)
T ss_pred HhcCCcEEEEcchHHhhcc
Confidence 6667889999999998643
No 473
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.92 E-value=0.0019 Score=67.01 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee-hhhhhh-c---cccCccHHHH
Q 005179 296 ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD-MGLLMA-G---AKERGELEAR 370 (710)
Q Consensus 296 ~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld-~~~l~~-g---~~~~g~~e~~ 370 (710)
++.++.+..++. .....++|+|++|+||||+++++...+... +..++.+. ..++.. + .....+....
T Consensus 66 ~~~~~~l~~~~~-~~~GlilisG~tGSGKTT~l~all~~i~~~-------~~~iitiEdp~E~~~~~~~q~~v~~~~~~~ 137 (264)
T cd01129 66 PENLEIFRKLLE-KPHGIILVTGPTGSGKTTTLYSALSELNTP-------EKNIITVEDPVEYQIPGINQVQVNEKAGLT 137 (264)
T ss_pred HHHHHHHHHHHh-cCCCEEEEECCCCCcHHHHHHHHHhhhCCC-------CCeEEEECCCceecCCCceEEEeCCcCCcC
Confidence 334445544443 345679999999999999999998877431 22222221 111100 0 0000010112
Q ss_pred HHHHHHHHHhcCCeEEEEccchhh
Q 005179 371 VTTLISEIQKSGDVILFIDEVHTL 394 (710)
Q Consensus 371 l~~~~~~~~~~~~~IL~IDEid~l 394 (710)
+...+..+...+|.+++|+|+-.-
T Consensus 138 ~~~~l~~~lR~~PD~i~vgEiR~~ 161 (264)
T cd01129 138 FARGLRAILRQDPDIIMVGEIRDA 161 (264)
T ss_pred HHHHHHHHhccCCCEEEeccCCCH
Confidence 444555555567889999998543
No 474
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.91 E-value=0.0094 Score=71.75 Aligned_cols=48 Identities=35% Similarity=0.613 Sum_probs=40.0
Q ss_pred CcccCHHHHHHHHHHHHcCCC---CCcEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 291 PVIGRETEIQRIIQILCRRTK---NNPILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~~~---~nvLL~GppG~GKT~la~~la~~l~~~ 338 (710)
+++||+.++..|.+.+.+..+ .-+++.|.+|.|||.+++.+.+.+.+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 479999999999998876333 347888999999999999999987653
No 475
>PRK09183 transposase/IS protein; Provisional
Probab=96.91 E-value=0.00051 Score=71.05 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
+++|+||||||||.||.+|+..+...+.....+++++
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~ 140 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAAD 140 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHH
Confidence 7899999999999999999988655444444444443
No 476
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.90 E-value=0.0017 Score=69.55 Aligned_cols=62 Identities=23% Similarity=0.214 Sum_probs=48.1
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
++|...++..+...++..-. . + ..+|++|+|||||+.+|++|-..-......++.+|++...
T Consensus 1 liG~S~~m~~~~~~~~~~a~-~-~-----~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~ 62 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-L-D-----RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALS 62 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-C-C-----CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCC
Confidence 46777778777776665531 1 1 3689999999999999999988766667899999998663
No 477
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.89 E-value=0.0015 Score=74.48 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=52.9
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
..++|+..++..+...++.... .+ ..+|++|++|||||++|++|-..-...+..++.+||+.+.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~--~~-----~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAA--SD-----LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP 250 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhC--CC-----CcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC
Confidence 3489999999999888877532 11 3789999999999999999999877677899999998874
No 478
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.88 E-value=0.0029 Score=58.78 Aligned_cols=22 Identities=45% Similarity=0.684 Sum_probs=20.5
Q ss_pred cEEEcCCCChHHHHHHHHHHHH
Q 005179 314 PILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l 335 (710)
++++|+||+||||+++.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 5899999999999999999887
No 479
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.88 E-value=0.0006 Score=76.55 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCC--CCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGS--VRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~--~~~li~~d~se~ 698 (710)
.+++||||||||||.|++++|+.+... +...+.++..+|
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 468999999999999999999998654 334555555444
No 480
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.87 E-value=0.0006 Score=75.48 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCC--CCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGS--VRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~--~~~li~~d~se~ 698 (710)
..++||||||||||.|++++++++... +...+.++.++|
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 468999999999999999999998754 345556665544
No 481
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.84 E-value=0.0035 Score=65.39 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 656 NRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 656 ~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.+|+ .+++.||||||||++|..||+.|
T Consensus 90 ~~p~-iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPI-IILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHh
Confidence 3565 79999999999999999999997
No 482
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.83 E-value=0.012 Score=61.26 Aligned_cols=42 Identities=29% Similarity=0.305 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 657 RPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 657 rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
++...++|+||||+|||+++..||..+-..+.....+|+..|
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 334689999999999999999999887665555655665544
No 483
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.83 E-value=0.009 Score=65.65 Aligned_cols=41 Identities=27% Similarity=0.343 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 658 PTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 658 p~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
+...++|+||+|+|||+++..||..|-..+.....+++..|
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 34689999999999999999999987654545555555444
No 484
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.83 E-value=0.0056 Score=62.33 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=22.0
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+..++++|+||+|||+++..++...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 45567899999999999999997664
No 485
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.82 E-value=0.0015 Score=52.78 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 005179 662 MLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 662 ~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
+.+.|+||+|||+++++|++.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999997
No 486
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.81 E-value=0.0023 Score=67.68 Aligned_cols=66 Identities=26% Similarity=0.426 Sum_probs=51.2
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
..+.|.+++++.+...++.+..|+...+| .++|.||+|+||+++++.|-+.| .+-.+..+..|...
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~kr---Il~L~GPvg~GKSsl~~~Lk~~l--e~y~~Y~l~~~Pm~ 126 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKR---ILLLLGPVGGGKSSLAELLKRGL--EEYPIYTLKGCPMH 126 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccce---EEEEECCCCCCHHHHHHHHHHHh--heEEEEEecCCccc
Confidence 34899999999999999998888865544 78999999999999999998876 22245555444443
No 487
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.80 E-value=0.001 Score=60.42 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 005179 662 MLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 662 ~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
+++.|+||+|||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999996
No 488
>PRK06620 hypothetical protein; Validated
Probab=96.79 E-value=0.00088 Score=67.19 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
.++||||||||||.|++++++.
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999886
No 489
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.79 E-value=0.0037 Score=58.99 Aligned_cols=41 Identities=34% Similarity=0.386 Sum_probs=33.5
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhc
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g 360 (710)
-+.|+|.||+||||||++|.+.+... +.+++.+|...+..+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~-------g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFAR-------GIKVYLLDGDNLRHG 44 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-------TS-EEEEEHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEecCcchhhc
Confidence 36899999999999999999999654 778888988777643
No 490
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.77 E-value=0.031 Score=59.38 Aligned_cols=102 Identities=20% Similarity=0.298 Sum_probs=53.0
Q ss_pred HHHHHHHHHHh--c-CCeEEEEccchhhhhCCCCCCCC----CCChHhHHHhhccccc------CCCeEE-EEccChHHH
Q 005179 370 RVTTLISEIQK--S-GDVILFIDEVHTLIGSGTVGRGN----KGTGLDISNLLKPSLG------RGELQC-IASTTQDEH 435 (710)
Q Consensus 370 ~l~~~~~~~~~--~-~~~IL~IDEid~l~~~~~~~~~~----~~~~~~~~~~L~~~l~------~~~v~v-I~att~~~~ 435 (710)
.+..+++++.. . .|+++-||++..++........+ ......+...|+.+++ +|.+++ +++|....-
T Consensus 141 ~~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~ 220 (309)
T PF10236_consen 141 VFQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNA 220 (309)
T ss_pred HHHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccc
Confidence 45666666654 2 47888899999998764322111 1112334555666533 343332 444332211
Q ss_pred Hhhhhc-------------------cHHHHccc---cceEecCCCHHHHHHHHHHHHH
Q 005179 436 RTQFEK-------------------DKALARRF---QPVLISEPSQEDAVRILLGLRE 471 (710)
Q Consensus 436 ~~~~~~-------------------d~aL~~Rf---~~I~v~~Ps~~~~~~IL~~l~~ 471 (710)
.....+ |+.+...+ ..|.++..+.+|...+++....
T Consensus 221 ~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~ 278 (309)
T PF10236_consen 221 PKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYAD 278 (309)
T ss_pred cCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Confidence 110112 22222222 2788888899987777665443
No 491
>PHA02624 large T antigen; Provisional
Probab=96.77 E-value=0.0063 Score=68.66 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=24.2
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+.++.++|+||||||||+++.+|++.+
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L 455 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLC 455 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 445678999999999999999999988
No 492
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.0034 Score=58.53 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.4
Q ss_pred cEEEcCCCChHHHHHHHHHHHH
Q 005179 314 PILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l 335 (710)
+.+.|+|||||||+++.||+.+
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHh
Confidence 4678999999999999999998
No 493
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.74 E-value=0.0017 Score=72.32 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
.+++||||||||||.|++++|+.+.......+-++..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~ 179 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSEL 179 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHH
Confidence 36899999999999999999999865444455554433
No 494
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.74 E-value=0.0026 Score=68.22 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=50.3
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
+.++|...++..+...+++.-. . + ..+|++|++||||+.+|++|-..-......++.+|++.+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~-~---~---~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~ 69 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP-L---D---KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC-C---C---CCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCC
Confidence 3478888888888877766531 1 1 3689999999999999999987655556789999999874
No 495
>PRK06696 uridine kinase; Validated
Probab=96.74 E-value=0.0031 Score=63.75 Aligned_cols=57 Identities=21% Similarity=0.159 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 636 EAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 636 ~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
+.++.|...+.... +.+|. -+.+.|+||+|||++|+.||+.|-..+...+.+-|..|
T Consensus 5 ~~~~~la~~~~~~~-----~~~~~-iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 5 QLIKELAEHILTLN-----LTRPL-RVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred HHHHHHHHHHHHhC-----CCCce-EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 34455555554322 23343 78899999999999999999998543345565554444
No 496
>PRK13947 shikimate kinase; Provisional
Probab=96.74 E-value=0.0036 Score=60.24 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=22.6
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
.|++|+|+||+|||++++.||+.+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999998
No 497
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.74 E-value=0.0018 Score=72.25 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=59.8
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcc----ccCc--------cHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA----KERG--------ELEARVTTLISEI 378 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~----~~~g--------~~e~~l~~~~~~~ 378 (710)
+.-++|+|+||+|||+++..++..+... +.++++++........ ...| ..+..+..+++.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-------g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA-------GGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 3457899999999999999999877532 3444444432111000 0000 0011234555556
Q ss_pred HhcCCeEEEEccchhhhhCCCCCCCCCC-ChHhHHHhhcccccCCCeEEEEc
Q 005179 379 QKSGDVILFIDEVHTLIGSGTVGRGNKG-TGLDISNLLKPSLGRGELQCIAS 429 (710)
Q Consensus 379 ~~~~~~IL~IDEid~l~~~~~~~~~~~~-~~~~~~~~L~~~l~~~~v~vI~a 429 (710)
...++.+++||.+..+......+..++. .-..+...|..+..+.++.+|.+
T Consensus 153 ~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv 204 (446)
T PRK11823 153 EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLV 204 (446)
T ss_pred HhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 6667789999999998653211000000 11223344555555555555544
No 498
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=96.73 E-value=0.00036 Score=71.75 Aligned_cols=59 Identities=31% Similarity=0.395 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 613 TADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 613 ~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
.|.+..+-..+.+ ++++++.+..+.+. .+. +.-| ++|||||||+|||....+.|+.|++
T Consensus 30 pwvekyrP~~l~d-----v~~~~ei~st~~~~-----~~~--~~lP--h~L~YgPPGtGktsti~a~a~~ly~ 88 (360)
T KOG0990|consen 30 PWVEKYRPPFLGI-----VIKQEPIWSTENRY-----SGM--PGLP--HLLFYGPPGTGKTSTILANARDFYS 88 (360)
T ss_pred CCccCCCCchhhh-----HhcCCchhhHHHHh-----ccC--CCCC--cccccCCCCCCCCCchhhhhhhhcC
Confidence 3444444444444 78888888777554 222 2222 8999999999999999999999998
No 499
>PHA02624 large T antigen; Provisional
Probab=96.73 E-value=0.0028 Score=71.43 Aligned_cols=27 Identities=41% Similarity=0.486 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
..+|||||||||||+++++|.+.|-|.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~ 458 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGK 458 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 489999999999999999999999784
No 500
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.72 E-value=0.0014 Score=71.12 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.3
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
-+++.|.||||||.|+-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 46889999999999999999988
Done!