Query 005179
Match_columns 710
No_of_seqs 556 out of 3925
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 17:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pxi_A Negative regulator of g 100.0 3.1E-73 1.1E-77 673.4 36.5 560 80-700 1-562 (758)
2 1r6b_X CLPA protein; AAA+, N-t 100.0 9.8E-69 3.4E-73 635.8 48.9 530 85-709 2-534 (758)
3 1qvr_A CLPB protein; coiled co 100.0 2.2E-68 7.6E-73 638.4 49.2 579 80-709 1-637 (854)
4 3pxg_A Negative regulator of g 100.0 9.8E-60 3.4E-64 526.4 27.0 392 80-526 1-394 (468)
5 3cf2_A TER ATPase, transitiona 100.0 3.3E-32 1.1E-36 316.1 8.9 315 287-698 201-547 (806)
6 3fh2_A Probable ATP-dependent 99.9 3.2E-25 1.1E-29 207.7 17.8 141 80-233 2-144 (146)
7 3fes_A ATP-dependent CLP endop 99.9 1.8E-24 6E-29 202.3 13.2 140 80-233 3-144 (145)
8 1ypw_A Transitional endoplasmi 99.9 9.3E-25 3.2E-29 258.2 10.7 318 286-699 200-548 (806)
9 2y1q_A CLPC N-domain, negative 99.9 1.6E-23 5.6E-28 197.1 14.8 140 80-233 1-142 (150)
10 1khy_A CLPB protein; alpha hel 99.9 3E-23 1E-27 194.9 15.7 140 80-231 1-142 (148)
11 4b4t_J 26S protease regulatory 99.9 1.6E-22 5.6E-27 216.7 20.4 200 286-515 144-367 (405)
12 4b4t_I 26S protease regulatory 99.9 3.4E-22 1.2E-26 214.5 16.5 200 286-515 178-401 (437)
13 1jbk_A CLPB protein; beta barr 99.9 3.1E-22 1.1E-26 194.8 14.5 191 271-466 3-194 (195)
14 4b4t_H 26S protease regulatory 99.9 1.3E-21 4.3E-26 212.2 20.2 199 287-515 206-428 (467)
15 4b4t_M 26S protease regulatory 99.9 1.1E-21 3.8E-26 213.5 17.8 201 286-515 177-400 (434)
16 4b4t_K 26S protease regulatory 99.9 1.1E-20 3.9E-25 205.5 22.7 201 287-515 169-392 (428)
17 4b4t_L 26S protease subunit RP 99.9 2.6E-21 9E-26 210.7 17.7 201 287-515 178-400 (437)
18 1k6k_A ATP-dependent CLP prote 99.9 2.2E-21 7.5E-26 181.0 14.1 135 85-230 2-139 (143)
19 2p65_A Hypothetical protein PF 99.9 1.4E-21 4.8E-26 189.5 13.2 184 271-458 3-187 (187)
20 3zri_A CLPB protein, CLPV; cha 99.9 4.1E-21 1.4E-25 183.3 14.6 140 76-229 16-160 (171)
21 2qp9_X Vacuolar protein sortin 99.8 1.4E-19 4.9E-24 194.6 22.4 211 278-516 39-267 (355)
22 3vfd_A Spastin; ATPase, microt 99.8 1.3E-19 4.4E-24 197.8 21.7 198 278-498 103-319 (389)
23 3eie_A Vacuolar protein sortin 99.8 8.1E-20 2.8E-24 194.1 18.4 202 285-514 13-232 (322)
24 3d8b_A Fidgetin-like protein 1 99.8 3.6E-19 1.2E-23 191.8 23.6 216 271-514 65-299 (357)
25 1xwi_A SKD1 protein; VPS4B, AA 99.8 4.1E-19 1.4E-23 188.5 18.7 202 287-515 9-228 (322)
26 3b9p_A CG5977-PA, isoform A; A 99.8 2.3E-18 7.9E-23 180.6 21.6 208 279-514 10-237 (297)
27 3h4m_A Proteasome-activating n 99.8 5.3E-18 1.8E-22 176.7 20.7 200 287-515 14-236 (285)
28 3pxi_A Negative regulator of g 99.8 6.8E-17 2.3E-21 191.0 31.7 177 290-492 491-702 (758)
29 3hu3_A Transitional endoplasmi 99.8 3.8E-18 1.3E-22 190.2 18.5 204 284-516 198-421 (489)
30 2zan_A Vacuolar protein sortin 99.8 3.1E-18 1.1E-22 189.6 17.3 206 283-515 127-350 (444)
31 3cf0_A Transitional endoplasmi 99.8 9.9E-18 3.4E-22 176.2 18.7 203 287-516 12-235 (301)
32 3syl_A Protein CBBX; photosynt 99.8 1.6E-17 5.6E-22 175.0 19.9 209 291-515 32-260 (309)
33 3pvs_A Replication-associated 99.8 3.5E-18 1.2E-22 188.7 15.0 200 278-518 14-223 (447)
34 3cf2_A TER ATPase, transitiona 99.7 9.1E-19 3.1E-23 203.6 8.2 201 288-516 475-697 (806)
35 2qz4_A Paraplegin; AAA+, SPG7, 99.7 4.5E-17 1.5E-21 167.2 19.3 204 288-517 4-229 (262)
36 1lv7_A FTSH; alpha/beta domain 99.7 2.6E-17 8.8E-22 168.9 17.1 204 284-515 6-230 (257)
37 3pfi_A Holliday junction ATP-d 99.7 1.2E-16 4.1E-21 170.7 22.1 192 276-515 15-232 (338)
38 1r6b_X CLPA protein; AAA+, N-t 99.7 3.2E-16 1.1E-20 185.5 25.8 181 290-493 458-694 (758)
39 2ce7_A Cell division protein F 99.7 8.1E-17 2.8E-21 178.0 18.7 201 288-516 14-235 (476)
40 3u61_B DNA polymerase accessor 99.7 1.4E-16 4.6E-21 169.3 15.3 195 278-514 14-220 (324)
41 2chg_A Replication factor C sm 99.7 2.3E-15 7.8E-20 149.6 21.0 195 279-514 6-208 (226)
42 3uk6_A RUVB-like 2; hexameric 99.7 1.1E-15 3.8E-20 165.0 19.1 205 279-516 32-309 (368)
43 1hqc_A RUVB; extended AAA-ATPa 99.7 1.4E-15 4.8E-20 161.2 19.1 184 282-514 4-215 (324)
44 2r44_A Uncharacterized protein 99.6 2.7E-15 9.3E-20 159.7 18.1 162 275-471 12-199 (331)
45 1sxj_B Activator 1 37 kDa subu 99.6 3.4E-15 1.2E-19 157.8 18.5 195 279-514 10-213 (323)
46 2x8a_A Nuclear valosin-contain 99.6 1.4E-15 4.9E-20 157.3 15.0 202 288-516 8-232 (274)
47 2chq_A Replication factor C sm 99.6 2.1E-15 7.1E-20 159.2 16.3 199 279-514 6-208 (319)
48 1iqp_A RFCS; clamp loader, ext 99.6 3.7E-15 1.3E-19 157.8 18.3 207 271-514 6-216 (327)
49 2r62_A Cell division protease 99.6 2.3E-17 7.8E-22 170.3 0.1 169 286-471 7-197 (268)
50 1ofh_A ATP-dependent HSL prote 99.6 2.9E-15 9.9E-20 157.5 15.9 213 291-516 16-272 (310)
51 1njg_A DNA polymerase III subu 99.6 2.7E-15 9.2E-20 151.0 14.7 200 279-514 12-232 (250)
52 3t15_A Ribulose bisphosphate c 99.6 2.8E-15 9.6E-20 156.8 13.7 161 310-498 35-217 (293)
53 1sxj_D Activator 1 41 kDa subu 99.6 2.3E-15 8E-20 161.3 13.3 203 277-515 24-240 (353)
54 1in4_A RUVB, holliday junction 99.6 5.7E-14 2E-18 149.7 22.8 191 279-517 14-230 (334)
55 1jr3_A DNA polymerase III subu 99.6 1.2E-14 4E-19 157.1 17.3 200 279-514 5-225 (373)
56 3te6_A Regulatory protein SIR3 99.6 6.7E-15 2.3E-19 154.2 14.5 213 292-519 22-288 (318)
57 1ixz_A ATP-dependent metallopr 99.6 8.5E-15 2.9E-19 149.8 14.8 202 287-516 13-235 (254)
58 2dhr_A FTSH; AAA+ protein, hex 99.6 3E-15 1E-19 166.5 12.2 204 286-517 27-251 (499)
59 1iy2_A ATP-dependent metallopr 99.6 3.9E-14 1.3E-18 147.0 17.1 202 286-515 36-258 (278)
60 1sxj_A Activator 1 95 kDa subu 99.6 1.9E-15 6.4E-20 170.6 6.8 198 277-514 26-256 (516)
61 1sxj_E Activator 1 40 kDa subu 99.6 6.6E-15 2.3E-19 158.1 10.1 204 279-516 3-243 (354)
62 1l8q_A Chromosomal replication 99.6 7.4E-14 2.5E-18 148.1 18.0 196 288-515 9-213 (324)
63 2c9o_A RUVB-like 1; hexameric 99.5 2E-13 6.9E-18 151.7 21.6 67 440-516 349-416 (456)
64 1d2n_A N-ethylmaleimide-sensit 99.5 4.3E-14 1.5E-18 146.1 14.4 197 290-514 33-246 (272)
65 1sxj_C Activator 1 40 kDa subu 99.5 1.2E-13 4.1E-18 147.6 18.2 184 277-495 12-203 (340)
66 2z4s_A Chromosomal replication 99.5 5.9E-14 2E-18 155.0 15.9 203 288-517 103-313 (440)
67 3bos_A Putative DNA replicatio 99.5 8.3E-14 2.9E-18 140.4 15.6 192 287-515 25-222 (242)
68 4fcw_A Chaperone protein CLPB; 99.5 9.4E-14 3.2E-18 146.2 14.2 180 291-492 18-256 (311)
69 2qby_B CDC6 homolog 3, cell di 99.5 3.6E-13 1.2E-17 145.9 19.1 209 290-517 20-252 (384)
70 2v1u_A Cell division control p 99.5 8E-14 2.7E-18 150.9 13.6 212 290-517 19-256 (387)
71 1g8p_A Magnesium-chelatase 38 99.5 3.5E-13 1.2E-17 144.2 18.4 204 286-516 20-301 (350)
72 3hws_A ATP-dependent CLP prote 99.5 6.9E-14 2.3E-18 150.9 12.7 191 292-493 17-301 (363)
73 2qby_A CDC6 homolog 1, cell di 99.5 3.9E-13 1.3E-17 145.4 18.6 209 289-517 19-252 (386)
74 2bjv_A PSP operon transcriptio 99.5 3.1E-14 1.1E-18 146.5 9.4 184 288-492 4-220 (265)
75 1um8_A ATP-dependent CLP prote 99.5 5.9E-13 2E-17 144.3 18.7 211 291-515 22-337 (376)
76 1ojl_A Transcriptional regulat 99.5 4.3E-14 1.5E-18 148.5 8.3 179 290-492 2-215 (304)
77 1fnn_A CDC6P, cell division co 99.5 1.1E-12 3.8E-17 142.2 18.8 205 290-517 17-254 (389)
78 3m6a_A ATP-dependent protease 99.5 1.3E-13 4.3E-18 156.3 11.6 176 291-491 82-293 (543)
79 4akg_A Glutathione S-transfera 99.4 1.1E-12 3.6E-17 169.3 20.1 140 310-473 1266-1434(2695)
80 1ypw_A Transitional endoplasmi 99.4 3.5E-15 1.2E-19 176.4 -3.3 168 287-471 474-662 (806)
81 1g41_A Heat shock protein HSLU 99.4 5.3E-12 1.8E-16 137.6 14.9 105 383-494 251-382 (444)
82 1qvr_A CLPB protein; coiled co 99.3 5.8E-12 2E-16 150.6 15.0 182 290-493 558-798 (854)
83 3n70_A Transport activator; si 99.3 1E-12 3.5E-17 122.3 6.0 135 291-457 2-142 (145)
84 3co5_A Putative two-component 99.3 5.9E-13 2E-17 123.7 2.5 131 291-458 5-141 (143)
85 4akg_A Glutathione S-transfera 99.3 3.8E-11 1.3E-15 155.0 19.8 124 311-467 645-790 (2695)
86 1a5t_A Delta prime, HOLB; zinc 99.3 2.5E-11 8.7E-16 129.1 14.1 170 295-496 7-197 (334)
87 3k1j_A LON protease, ATP-depen 99.3 6.2E-11 2.1E-15 136.2 17.4 219 282-518 33-356 (604)
88 1w5s_A Origin recognition comp 99.2 2.9E-10 1E-14 124.1 19.2 214 290-515 22-271 (412)
89 4fcw_A Chaperone protein CLPB; 99.2 2.7E-11 9.2E-16 127.3 10.3 86 615-700 3-88 (311)
90 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 3.4E-11 1.2E-15 134.0 11.0 208 291-521 23-270 (500)
91 3vkg_A Dynein heavy chain, cyt 99.2 1.4E-10 4.7E-15 150.5 15.6 157 292-473 1284-1472(3245)
92 2gno_A DNA polymerase III, gam 99.1 2.7E-10 9.3E-15 119.2 12.1 146 294-470 1-152 (305)
93 3f9v_A Minichromosome maintena 99.1 9E-12 3.1E-16 142.3 -1.2 203 290-516 295-536 (595)
94 2qen_A Walker-type ATPase; unk 99.1 1.9E-09 6.4E-14 114.7 16.7 183 290-496 12-238 (350)
95 3vkg_A Dynein heavy chain, cyt 99.0 2.7E-08 9.1E-13 129.5 27.7 123 312-467 605-750 (3245)
96 4b4t_J 26S protease regulatory 99.0 2.5E-10 8.4E-15 122.5 6.0 63 631-700 150-220 (405)
97 4b4t_L 26S protease subunit RP 98.9 6.3E-10 2.1E-14 121.2 7.0 63 631-700 183-253 (437)
98 4b4t_I 26S protease regulatory 98.9 6.8E-10 2.3E-14 119.4 7.1 63 631-700 184-254 (437)
99 4b4t_M 26S protease regulatory 98.9 6.5E-10 2.2E-14 120.9 6.5 63 631-700 183-253 (434)
100 4b4t_K 26S protease regulatory 98.9 8E-10 2.7E-14 120.1 7.1 63 631-700 174-244 (428)
101 4b4t_H 26S protease regulatory 98.9 7.4E-10 2.5E-14 120.2 5.8 63 631-700 211-281 (467)
102 2fna_A Conserved hypothetical 98.9 4.5E-09 1.6E-13 111.9 11.5 177 290-495 13-241 (357)
103 1ny5_A Transcriptional regulat 98.9 2.3E-09 7.8E-14 116.3 7.3 180 289-492 136-350 (387)
104 3dzd_A Transcriptional regulat 98.8 2.4E-08 8.2E-13 107.4 14.3 178 291-492 130-341 (368)
105 1um8_A ATP-dependent CLP prote 98.8 4.5E-09 1.6E-13 113.5 6.0 77 620-699 12-109 (376)
106 2w58_A DNAI, primosome compone 98.7 1.4E-08 4.9E-13 99.4 7.7 99 283-394 18-127 (202)
107 3hws_A ATP-dependent CLP prote 98.7 9.5E-09 3.3E-13 110.5 6.9 76 621-699 7-88 (363)
108 3fes_A ATP-dependent CLP endop 98.7 2.2E-08 7.7E-13 92.8 8.3 65 169-233 6-70 (145)
109 3syl_A Protein CBBX; photosynt 98.7 2.5E-08 8.4E-13 104.5 8.6 80 619-699 21-111 (309)
110 1ofh_A ATP-dependent HSL prote 98.7 1.6E-08 5.6E-13 105.6 7.2 77 621-700 7-88 (310)
111 3fh2_A Probable ATP-dependent 98.7 3.8E-08 1.3E-12 91.3 8.5 64 170-233 6-69 (146)
112 3f8t_A Predicted ATPase involv 98.7 1.2E-07 4.2E-12 102.6 13.6 145 288-461 211-385 (506)
113 1g41_A Heat shock protein HSLU 98.7 2.3E-08 8E-13 108.9 7.9 77 621-700 7-88 (444)
114 1khy_A CLPB protein; alpha hel 98.6 5.4E-08 1.9E-12 90.4 8.7 64 170-233 5-68 (148)
115 3zri_A CLPB protein, CLPV; cha 98.6 6.2E-08 2.1E-12 92.0 8.1 63 170-233 24-86 (171)
116 2y1q_A CLPC N-domain, negative 98.6 6.8E-08 2.3E-12 89.9 8.3 64 170-233 5-68 (150)
117 3ec2_A DNA replication protein 98.6 2.5E-08 8.4E-13 95.8 4.4 100 283-394 3-112 (180)
118 2c9o_A RUVB-like 1; hexameric 98.6 5.9E-08 2E-12 107.6 7.9 67 628-699 36-102 (456)
119 1xwi_A SKD1 protein; VPS4B, AA 98.6 9E-08 3.1E-12 101.0 8.4 66 631-699 14-83 (322)
120 3cf0_A Transitional endoplasmi 98.5 8.1E-08 2.8E-12 100.4 6.1 61 631-698 17-85 (301)
121 3m6a_A ATP-dependent protease 98.5 7.1E-08 2.4E-12 109.1 5.8 102 591-699 44-145 (543)
122 2x8a_A Nuclear valosin-contain 98.5 9.6E-08 3.3E-12 98.3 6.2 76 611-699 6-81 (274)
123 2qz4_A Paraplegin; AAA+, SPG7, 98.5 1.9E-07 6.4E-12 95.1 8.1 65 629-700 6-77 (262)
124 2qgz_A Helicase loader, putati 98.5 1.5E-07 5.2E-12 98.6 6.9 96 286-394 120-226 (308)
125 3eie_A Vacuolar protein sortin 98.5 1E-07 3.5E-12 100.6 5.4 65 631-698 20-87 (322)
126 2kjq_A DNAA-related protein; s 98.4 5.9E-08 2E-12 90.3 2.8 105 310-450 35-140 (149)
127 3t15_A Ribulose bisphosphate c 98.4 1.4E-07 4.8E-12 98.1 5.7 60 635-698 13-72 (293)
128 1lv7_A FTSH; alpha/beta domain 98.4 3.8E-07 1.3E-11 92.8 8.4 64 630-700 13-83 (257)
129 3n70_A Transport activator; si 98.4 2.1E-07 7.3E-12 86.0 5.9 63 630-700 2-64 (145)
130 1k6k_A ATP-dependent CLP prote 98.4 2.9E-07 1E-11 84.9 6.7 62 171-234 2-63 (143)
131 3h4m_A Proteasome-activating n 98.4 3.2E-07 1.1E-11 94.7 7.1 62 631-699 19-88 (285)
132 3b9p_A CG5977-PA, isoform A; A 98.4 4.2E-07 1.4E-11 94.5 7.4 63 631-699 23-91 (297)
133 2zan_A Vacuolar protein sortin 98.4 4.1E-07 1.4E-11 100.3 7.2 66 631-699 136-205 (444)
134 2qp9_X Vacuolar protein sortin 98.4 1.7E-07 5.9E-12 100.2 4.1 65 630-698 52-120 (355)
135 3cmw_A Protein RECA, recombina 98.3 1.6E-06 5.5E-11 107.9 13.0 79 310-395 731-823 (1706)
136 1jr3_D DNA polymerase III, del 98.3 1.6E-06 5.5E-11 92.2 11.1 156 306-495 13-176 (343)
137 2r62_A Cell division protease 98.3 2.8E-07 9.7E-12 94.3 4.7 63 630-699 12-81 (268)
138 2ce7_A Cell division protein F 98.3 9.5E-07 3.3E-11 97.5 8.2 62 631-699 18-86 (476)
139 2r44_A Uncharacterized protein 98.3 1.1E-06 3.8E-11 92.9 7.7 64 619-696 17-80 (331)
140 3d8b_A Fidgetin-like protein 1 98.2 9.5E-07 3.2E-11 94.6 6.9 68 630-700 85-155 (357)
141 2bjv_A PSP operon transcriptio 98.2 7.3E-07 2.5E-11 91.1 5.6 63 630-699 7-69 (265)
142 3vfd_A Spastin; ATPase, microt 98.2 1.2E-06 4.2E-11 94.8 7.2 67 631-700 117-186 (389)
143 3nbx_X ATPase RAVA; AAA+ ATPas 98.2 1.3E-06 4.4E-11 97.2 7.1 55 618-683 11-65 (500)
144 3uk6_A RUVB-like 2; hexameric 98.2 1.6E-06 5.5E-11 92.9 7.5 64 629-697 44-107 (368)
145 3hu3_A Transitional endoplasmi 98.2 9.4E-07 3.2E-11 98.3 5.4 62 630-698 205-274 (489)
146 2dhr_A FTSH; AAA+ protein, hex 98.2 2.3E-06 7.7E-11 95.1 8.0 64 630-700 32-102 (499)
147 3co5_A Putative two-component 98.1 5.7E-07 1.9E-11 82.9 2.2 57 631-698 6-62 (143)
148 3pxg_A Negative regulator of g 98.1 3.1E-06 1E-10 93.9 8.0 64 170-233 5-68 (468)
149 1sxj_A Activator 1 95 kDa subu 98.1 3.6E-06 1.2E-10 94.7 8.6 68 630-700 40-115 (516)
150 1d2n_A N-ethylmaleimide-sensit 98.1 9.4E-07 3.2E-11 90.7 3.2 65 627-697 31-99 (272)
151 3pfi_A Holliday junction ATP-d 98.1 3.5E-06 1.2E-10 89.2 7.2 63 630-699 30-92 (338)
152 1tue_A Replication protein E1; 98.0 5.3E-06 1.8E-10 80.3 6.5 38 298-335 44-82 (212)
153 1ojl_A Transcriptional regulat 98.0 5E-06 1.7E-10 86.8 6.7 62 630-698 3-64 (304)
154 1ixz_A ATP-dependent metallopr 98.0 6.6E-06 2.3E-10 83.3 7.2 59 631-696 18-83 (254)
155 1sxj_C Activator 1 40 kDa subu 98.0 4.1E-06 1.4E-10 88.9 5.6 59 631-698 27-87 (340)
156 1jbk_A CLPB protein; beta barr 98.0 3.7E-06 1.3E-10 80.4 4.7 61 628-697 21-88 (195)
157 2r2a_A Uncharacterized protein 98.0 9.4E-06 3.2E-10 79.1 7.6 132 314-458 8-154 (199)
158 1iqp_A RFCS; clamp loader, ext 98.0 5.2E-06 1.8E-10 87.0 5.8 59 630-697 26-86 (327)
159 2p65_A Hypothetical protein PF 98.0 4.4E-06 1.5E-10 79.6 4.7 60 628-696 21-87 (187)
160 1hqc_A RUVB; extended AAA-ATPa 97.9 8.8E-06 3E-10 85.4 6.6 64 630-700 13-76 (324)
161 1in4_A RUVB, holliday junction 97.9 7.5E-06 2.6E-10 86.7 6.0 49 631-683 27-75 (334)
162 2chg_A Replication factor C sm 97.9 9.2E-06 3.2E-10 79.5 5.9 62 630-700 18-81 (226)
163 2qby_B CDC6 homolog 3, cell di 97.9 5E-06 1.7E-10 89.4 4.2 65 629-698 20-92 (384)
164 3u61_B DNA polymerase accessor 97.9 1.1E-05 3.7E-10 84.9 6.7 58 630-698 27-84 (324)
165 1iy2_A ATP-dependent metallopr 97.9 1.3E-05 4.6E-10 82.3 7.2 59 631-696 42-107 (278)
166 3pvs_A Replication-associated 97.9 9.6E-06 3.3E-10 89.2 6.3 55 630-696 27-84 (447)
167 2chq_A Replication factor C sm 97.9 4.6E-06 1.6E-10 87.2 3.5 61 631-700 19-81 (319)
168 1z6t_A APAF-1, apoptotic prote 97.9 4.4E-05 1.5E-09 87.2 11.9 49 286-334 120-170 (591)
169 1sxj_B Activator 1 37 kDa subu 97.9 3.4E-06 1.2E-10 88.3 2.2 60 630-698 22-83 (323)
170 1sxj_D Activator 1 41 kDa subu 97.8 5E-06 1.7E-10 88.3 2.9 61 629-698 37-100 (353)
171 2vhj_A Ntpase P4, P4; non- hyd 97.8 8.9E-06 3.1E-10 84.3 4.3 74 311-396 123-196 (331)
172 3te6_A Regulatory protein SIR3 97.8 1.5E-05 5.1E-10 83.3 5.5 64 631-699 22-92 (318)
173 1fnn_A CDC6P, cell division co 97.8 2.9E-05 1E-09 83.4 7.8 69 629-700 17-86 (389)
174 1ye8_A Protein THEP1, hypothet 97.8 7.1E-05 2.4E-09 71.5 9.5 23 313-335 2-24 (178)
175 2v1u_A Cell division control p 97.8 1E-05 3.5E-10 86.8 3.7 67 629-700 19-91 (387)
176 2w58_A DNAI, primosome compone 97.8 2E-05 6.7E-10 76.7 5.4 38 660-697 55-92 (202)
177 3bos_A Putative DNA replicatio 97.8 1.9E-05 6.4E-10 78.7 5.3 40 660-699 53-92 (242)
178 1g8p_A Magnesium-chelatase 38 97.7 1.2E-05 4.1E-10 85.3 3.7 45 631-684 26-70 (350)
179 1sxj_E Activator 1 40 kDa subu 97.7 1.2E-05 3.9E-10 85.7 3.2 51 630-688 15-65 (354)
180 1njg_A DNA polymerase III subu 97.7 3.6E-05 1.2E-09 76.2 6.5 48 630-685 24-71 (250)
181 3upu_A ATP-dependent DNA helic 97.7 0.00012 4.2E-09 80.8 11.2 60 278-338 12-72 (459)
182 3ec2_A DNA replication protein 97.7 2E-05 6.8E-10 75.3 4.1 25 660-684 39-63 (180)
183 1tue_A Replication protein E1; 97.7 6.4E-05 2.2E-09 72.7 7.1 26 660-685 59-84 (212)
184 1jr3_A DNA polymerase III subu 97.7 4.6E-05 1.6E-09 81.4 6.7 49 630-686 17-65 (373)
185 1u0j_A DNA replication protein 97.6 0.00012 4.1E-09 74.0 8.4 36 300-335 91-128 (267)
186 3f9v_A Minichromosome maintena 97.6 9.6E-06 3.3E-10 92.5 -0.0 84 590-683 266-351 (595)
187 1a5t_A Delta prime, HOLB; zinc 97.6 6.6E-05 2.2E-09 79.4 6.2 49 631-687 4-52 (334)
188 1l8q_A Chromosomal replication 97.5 1.8E-05 6.3E-10 83.2 1.6 39 660-698 38-76 (324)
189 3k1j_A LON protease, ATP-depen 97.5 5.7E-05 1.9E-09 86.5 5.6 57 631-698 43-99 (604)
190 3sfz_A APAF-1, apoptotic pepti 97.5 0.00032 1.1E-08 87.0 12.1 51 285-335 119-171 (1249)
191 2gno_A DNA polymerase III, gam 97.5 6.8E-05 2.3E-09 78.1 5.0 55 633-696 1-58 (305)
192 2a5y_B CED-4; apoptosis; HET: 97.5 0.00022 7.6E-09 80.6 9.6 41 293-333 131-174 (549)
193 2qby_A CDC6 homolog 1, cell di 97.5 3E-05 1E-09 83.0 2.0 64 629-697 20-86 (386)
194 2qgz_A Helicase loader, putati 97.4 0.00011 3.9E-09 76.5 5.6 37 660-696 153-190 (308)
195 2orw_A Thymidine kinase; TMTK, 97.4 2.5E-05 8.6E-10 75.1 0.5 25 313-337 5-29 (184)
196 1u0j_A DNA replication protein 97.4 0.00014 4.7E-09 73.6 5.6 26 660-685 105-132 (267)
197 2z4s_A Chromosomal replication 97.4 7.2E-05 2.4E-09 82.2 3.5 39 660-698 131-171 (440)
198 2r8r_A Sensor protein; KDPD, P 97.3 0.0018 6.2E-08 63.6 12.2 30 309-338 4-33 (228)
199 3cmu_A Protein RECA, recombina 97.3 0.00059 2E-08 86.2 10.4 82 308-396 1424-1519(2050)
200 3e1s_A Exodeoxyribonuclease V, 97.3 0.0096 3.3E-07 67.3 19.5 50 173-233 72-122 (574)
201 2kjq_A DNAA-related protein; s 97.2 0.00018 6.3E-09 66.5 4.2 39 661-699 38-76 (149)
202 1vt4_I APAF-1 related killer D 97.2 0.0014 4.7E-08 77.8 11.9 43 292-334 130-173 (1221)
203 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00044 1.5E-08 68.2 6.0 27 310-336 22-48 (235)
204 3cmw_A Protein RECA, recombina 97.1 0.00069 2.4E-08 84.6 8.6 80 311-397 1082-1175(1706)
205 1w5s_A Origin recognition comp 97.1 0.00025 8.5E-09 76.7 4.0 67 629-698 22-97 (412)
206 2b8t_A Thymidine kinase; deoxy 97.0 0.00065 2.2E-08 67.1 5.4 27 312-338 13-39 (223)
207 1qhx_A CPT, protein (chloramph 96.9 0.0018 6.1E-08 61.1 7.8 24 312-335 4-27 (178)
208 1gvn_B Zeta; postsegregational 96.9 0.0011 3.9E-08 68.2 6.6 33 660-695 34-66 (287)
209 2cvh_A DNA repair and recombin 96.9 0.00055 1.9E-08 67.0 4.0 23 311-333 20-42 (220)
210 2cdn_A Adenylate kinase; phosp 96.8 0.0008 2.7E-08 65.1 4.6 32 651-683 13-44 (201)
211 2p5t_B PEZT; postsegregational 96.8 0.0015 5E-08 65.9 6.6 25 660-684 33-57 (253)
212 3vaa_A Shikimate kinase, SK; s 96.7 0.00084 2.9E-08 65.0 4.0 24 660-683 26-49 (199)
213 3trf_A Shikimate kinase, SK; a 96.6 0.00095 3.3E-08 63.5 3.6 25 311-335 5-29 (185)
214 1n0w_A DNA repair protein RAD5 96.6 0.0021 7.3E-08 63.8 6.3 26 310-335 23-48 (243)
215 3uie_A Adenylyl-sulfate kinase 96.6 0.0013 4.5E-08 63.7 4.5 25 660-684 26-50 (200)
216 1knq_A Gluconate kinase; ALFA/ 96.6 0.0015 5.3E-08 61.5 4.8 24 659-682 8-31 (175)
217 2dr3_A UPF0273 protein PH0284; 96.6 0.0025 8.4E-08 63.5 6.5 28 310-337 22-49 (247)
218 3dm5_A SRP54, signal recogniti 96.6 0.019 6.5E-07 62.3 13.8 77 311-394 100-194 (443)
219 1y63_A LMAJ004144AAA protein; 96.6 0.0015 5.1E-08 62.4 4.4 25 661-685 12-36 (184)
220 1g5t_A COB(I)alamin adenosyltr 96.5 0.012 4.1E-07 56.5 10.4 29 310-338 27-55 (196)
221 3vaa_A Shikimate kinase, SK; s 96.5 0.0014 4.8E-08 63.4 3.7 26 310-335 24-49 (199)
222 3iij_A Coilin-interacting nucl 96.5 0.002 6.7E-08 61.1 4.5 26 310-335 10-35 (180)
223 1xp8_A RECA protein, recombina 96.5 0.0059 2E-07 65.0 8.6 79 310-396 73-166 (366)
224 3t61_A Gluconokinase; PSI-biol 96.4 0.0016 5.6E-08 63.0 3.6 33 661-698 20-52 (202)
225 2fz4_A DNA repair protein RAD2 96.4 0.008 2.7E-07 59.9 8.7 24 312-335 109-132 (237)
226 3iij_A Coilin-interacting nucl 96.4 0.0017 5.9E-08 61.5 3.6 23 661-683 13-35 (180)
227 3kb2_A SPBC2 prophage-derived 96.4 0.0021 7.4E-08 60.0 4.1 23 313-335 3-25 (173)
228 1ny5_A Transcriptional regulat 96.4 0.0045 1.5E-07 66.6 7.1 62 631-699 139-200 (387)
229 2ehv_A Hypothetical protein PH 96.4 0.0038 1.3E-07 62.2 6.2 25 310-334 29-53 (251)
230 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0042 1.4E-07 65.3 6.5 24 660-683 25-48 (359)
231 1via_A Shikimate kinase; struc 96.3 0.0024 8.3E-08 60.2 4.0 24 312-335 5-28 (175)
232 3crm_A TRNA delta(2)-isopenten 96.3 0.0059 2E-07 63.5 7.3 33 312-354 6-38 (323)
233 3umf_A Adenylate kinase; rossm 96.3 0.0028 9.5E-08 62.3 4.4 24 660-683 30-53 (217)
234 4eun_A Thermoresistant glucoki 96.3 0.0026 8.9E-08 61.5 4.2 33 661-698 31-63 (200)
235 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0025 8.4E-08 66.1 4.2 33 660-693 124-156 (331)
236 2zr9_A Protein RECA, recombina 96.3 0.0055 1.9E-07 64.8 7.0 78 310-395 60-152 (349)
237 1zuh_A Shikimate kinase; alpha 96.3 0.0022 7.5E-08 60.0 3.4 25 311-335 7-31 (168)
238 1ak2_A Adenylate kinase isoenz 96.3 0.0027 9.4E-08 63.0 4.3 23 661-683 18-40 (233)
239 2iyv_A Shikimate kinase, SK; t 96.2 0.0027 9.2E-08 60.3 4.1 24 312-335 3-26 (184)
240 1y63_A LMAJ004144AAA protein; 96.2 0.0023 7.7E-08 61.1 3.4 25 310-334 9-33 (184)
241 3uie_A Adenylyl-sulfate kinase 96.2 0.016 5.6E-07 55.8 9.3 29 308-336 22-50 (200)
242 2iut_A DNA translocase FTSK; n 96.2 0.021 7.1E-07 63.8 11.1 72 384-467 345-420 (574)
243 2yvu_A Probable adenylyl-sulfa 96.1 0.0041 1.4E-07 59.3 4.8 28 660-687 14-41 (186)
244 3a8t_A Adenylate isopentenyltr 96.1 0.0044 1.5E-07 64.7 5.3 25 311-335 40-64 (339)
245 3lxw_A GTPase IMAP family memb 96.1 0.005 1.7E-07 61.8 5.6 23 311-333 21-43 (247)
246 1kag_A SKI, shikimate kinase I 96.1 0.0033 1.1E-07 59.0 4.0 25 311-335 4-28 (173)
247 1zuh_A Shikimate kinase; alpha 96.1 0.0031 1.1E-07 58.9 3.8 24 660-683 8-31 (168)
248 3tlx_A Adenylate kinase 2; str 96.1 0.0056 1.9E-07 61.2 5.9 24 660-683 30-53 (243)
249 2c95_A Adenylate kinase 1; tra 96.1 0.0034 1.2E-07 60.1 4.0 23 661-683 11-33 (196)
250 3upu_A ATP-dependent DNA helic 96.1 0.0036 1.2E-07 68.9 4.8 46 633-688 29-74 (459)
251 3jvv_A Twitching mobility prot 96.1 0.0027 9.2E-08 67.4 3.5 29 309-337 121-149 (356)
252 3lda_A DNA repair protein RAD5 96.1 0.0068 2.3E-07 65.3 6.7 26 310-335 177-202 (400)
253 2bwj_A Adenylate kinase 5; pho 96.1 0.0029 1E-07 60.7 3.5 23 661-683 14-36 (199)
254 1ukz_A Uridylate kinase; trans 96.1 0.0034 1.2E-07 60.7 3.9 24 660-683 16-39 (203)
255 2rhm_A Putative kinase; P-loop 96.1 0.0027 9.3E-08 60.6 3.2 25 311-335 5-29 (193)
256 3hr8_A Protein RECA; alpha and 96.1 0.009 3.1E-07 63.2 7.4 79 311-396 61-153 (356)
257 2qor_A Guanylate kinase; phosp 96.0 0.0028 9.7E-08 61.5 3.2 23 661-683 14-36 (204)
258 2ze6_A Isopentenyl transferase 96.0 0.0038 1.3E-07 63.0 4.1 32 313-354 3-34 (253)
259 1zu4_A FTSY; GTPase, signal re 96.0 0.012 4.1E-07 61.4 8.0 43 656-698 102-144 (320)
260 1u94_A RECA protein, recombina 96.0 0.011 3.6E-07 62.8 7.6 78 310-395 62-154 (356)
261 1svm_A Large T antigen; AAA+ f 96.0 0.0073 2.5E-07 64.4 6.3 26 660-685 170-195 (377)
262 1zp6_A Hypothetical protein AT 96.0 0.0038 1.3E-07 59.6 3.7 24 660-683 10-33 (191)
263 3f8t_A Predicted ATPase involv 96.0 0.004 1.4E-07 67.6 4.2 76 590-682 186-262 (506)
264 1e6c_A Shikimate kinase; phosp 96.0 0.0044 1.5E-07 58.0 4.1 24 312-335 3-26 (173)
265 3t61_A Gluconokinase; PSI-biol 96.0 0.0052 1.8E-07 59.4 4.6 25 311-335 18-42 (202)
266 4a74_A DNA repair and recombin 96.0 0.006 2.1E-07 59.9 5.2 25 311-335 25-49 (231)
267 2wwf_A Thymidilate kinase, put 96.0 0.005 1.7E-07 59.7 4.5 23 661-683 12-34 (212)
268 3tqc_A Pantothenate kinase; bi 95.9 0.011 3.6E-07 61.7 7.1 29 655-684 89-117 (321)
269 2cdn_A Adenylate kinase; phosp 95.9 0.0043 1.5E-07 59.9 3.8 25 311-335 20-44 (201)
270 1aky_A Adenylate kinase; ATP:A 95.9 0.0043 1.5E-07 60.9 3.9 25 311-335 4-28 (220)
271 2c95_A Adenylate kinase 1; tra 95.9 0.0044 1.5E-07 59.3 3.7 26 310-335 8-33 (196)
272 1nks_A Adenylate kinase; therm 95.9 0.0064 2.2E-07 57.8 4.8 24 313-336 3-26 (194)
273 4gp7_A Metallophosphoesterase; 95.9 0.0054 1.8E-07 57.7 4.3 27 661-687 11-49 (171)
274 1rz3_A Hypothetical protein rb 95.9 0.0087 3E-07 57.9 5.8 37 660-696 23-59 (201)
275 2qen_A Walker-type ATPase; unk 95.9 0.0076 2.6E-07 63.1 5.9 43 630-683 13-55 (350)
276 3lw7_A Adenylate kinase relate 95.9 0.0042 1.4E-07 57.9 3.3 22 313-335 3-24 (179)
277 2r6a_A DNAB helicase, replicat 95.9 0.0074 2.5E-07 66.3 5.8 28 310-337 202-229 (454)
278 2bbw_A Adenylate kinase 4, AK4 95.8 0.0043 1.5E-07 62.1 3.6 24 660-683 28-51 (246)
279 3b9q_A Chloroplast SRP recepto 95.8 0.022 7.4E-07 58.9 8.9 33 659-691 100-132 (302)
280 2z43_A DNA repair and recombin 95.8 0.011 3.8E-07 61.8 6.8 26 310-335 106-131 (324)
281 3dm5_A SRP54, signal recogniti 95.8 0.046 1.6E-06 59.3 11.7 40 659-698 100-139 (443)
282 3c8u_A Fructokinase; YP_612366 95.8 0.0063 2.2E-07 59.2 4.4 25 660-684 23-47 (208)
283 2zts_A Putative uncharacterize 95.8 0.014 4.7E-07 58.0 7.0 25 310-334 29-53 (251)
284 1nn5_A Similar to deoxythymidy 95.8 0.0061 2.1E-07 59.2 4.2 23 661-683 11-33 (215)
285 3foz_A TRNA delta(2)-isopenten 95.8 0.015 5E-07 59.9 7.1 93 313-433 12-110 (316)
286 3exa_A TRNA delta(2)-isopenten 95.8 0.015 5.2E-07 59.9 7.2 97 313-433 5-103 (322)
287 3dl0_A Adenylate kinase; phosp 95.7 0.0042 1.4E-07 60.7 2.9 23 313-335 2-24 (216)
288 1kht_A Adenylate kinase; phosp 95.7 0.0049 1.7E-07 58.6 3.2 25 312-336 4-28 (192)
289 1htw_A HI0065; nucleotide-bind 95.7 0.0098 3.3E-07 55.3 5.1 27 661-688 35-61 (158)
290 3r20_A Cytidylate kinase; stru 95.7 0.0064 2.2E-07 60.3 4.0 23 661-683 11-33 (233)
291 1tev_A UMP-CMP kinase; ploop, 95.7 0.0061 2.1E-07 58.1 3.8 24 312-335 4-27 (196)
292 3lxx_A GTPase IMAP family memb 95.7 0.015 5.1E-07 57.8 6.7 24 311-334 29-52 (239)
293 3cm0_A Adenylate kinase; ATP-b 95.7 0.0054 1.8E-07 58.2 3.3 24 312-335 5-28 (186)
294 1m7g_A Adenylylsulfate kinase; 95.7 0.0065 2.2E-07 59.2 4.0 24 661-684 27-50 (211)
295 3fb4_A Adenylate kinase; psych 95.7 0.0059 2E-07 59.6 3.7 23 313-335 2-24 (216)
296 2pt5_A Shikimate kinase, SK; a 95.7 0.0061 2.1E-07 56.8 3.6 23 313-335 2-24 (168)
297 3e70_C DPA, signal recognition 95.7 0.022 7.5E-07 59.6 8.2 31 659-689 129-159 (328)
298 2qmh_A HPR kinase/phosphorylas 95.6 0.0046 1.6E-07 59.4 2.6 23 661-683 36-58 (205)
299 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.018 6.3E-07 58.0 7.3 26 312-337 5-30 (260)
300 1ak2_A Adenylate kinase isoenz 95.6 0.0067 2.3E-07 60.2 4.0 25 311-335 16-40 (233)
301 2q6t_A DNAB replication FORK h 95.6 0.0099 3.4E-07 65.1 5.7 27 311-337 200-226 (444)
302 2bwj_A Adenylate kinase 5; pho 95.6 0.0059 2E-07 58.5 3.5 25 311-335 12-36 (199)
303 3tlx_A Adenylate kinase 2; str 95.6 0.011 3.8E-07 59.0 5.6 26 310-335 28-53 (243)
304 4eun_A Thermoresistant glucoki 95.6 0.0076 2.6E-07 58.1 4.2 27 309-335 27-53 (200)
305 2p5t_B PEZT; postsegregational 95.6 0.014 4.6E-07 58.8 6.1 24 312-335 33-56 (253)
306 1zak_A Adenylate kinase; ATP:A 95.6 0.0057 2E-07 60.1 3.3 25 311-335 5-29 (222)
307 1knq_A Gluconate kinase; ALFA/ 95.6 0.007 2.4E-07 56.8 3.8 24 312-335 9-32 (175)
308 3dzd_A Transcriptional regulat 95.6 0.02 6.7E-07 61.0 7.6 61 631-699 131-191 (368)
309 3nwj_A ATSK2; P loop, shikimat 95.6 0.0073 2.5E-07 60.7 4.0 40 636-683 33-72 (250)
310 1zd8_A GTP:AMP phosphotransfer 95.6 0.0058 2E-07 60.3 3.2 25 311-335 7-31 (227)
311 2fna_A Conserved hypothetical 95.6 0.0077 2.6E-07 63.2 4.3 53 630-698 14-66 (357)
312 3a8t_A Adenylate isopentenyltr 95.6 0.0054 1.8E-07 64.1 3.0 24 661-684 42-65 (339)
313 2qt1_A Nicotinamide riboside k 95.6 0.0066 2.3E-07 58.8 3.5 34 650-683 12-45 (207)
314 1ex7_A Guanylate kinase; subst 95.5 0.0066 2.2E-07 58.1 3.3 24 312-335 2-25 (186)
315 2px0_A Flagellar biosynthesis 95.5 0.023 7.9E-07 58.6 7.6 39 660-698 106-145 (296)
316 1qf9_A UMP/CMP kinase, protein 95.5 0.0073 2.5E-07 57.4 3.6 24 312-335 7-30 (194)
317 3be4_A Adenylate kinase; malar 95.5 0.0067 2.3E-07 59.4 3.3 24 312-335 6-29 (217)
318 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.0068 2.3E-07 59.5 3.4 35 660-694 24-58 (235)
319 1rj9_A FTSY, signal recognitio 95.5 0.016 5.3E-07 60.1 6.2 33 660-692 103-135 (304)
320 3sr0_A Adenylate kinase; phosp 95.5 0.0092 3.2E-07 58.1 4.2 23 313-335 2-24 (206)
321 1odf_A YGR205W, hypothetical 3 95.4 0.022 7.5E-07 58.5 7.1 26 660-685 32-57 (290)
322 3kl4_A SRP54, signal recogniti 95.4 0.042 1.4E-06 59.5 9.6 27 312-338 98-124 (433)
323 1zp6_A Hypothetical protein AT 95.4 0.0055 1.9E-07 58.4 2.3 25 310-334 8-32 (191)
324 2yhs_A FTSY, cell division pro 95.4 0.025 8.4E-07 62.1 7.7 34 658-691 292-325 (503)
325 1m7g_A Adenylylsulfate kinase; 95.4 0.036 1.2E-06 53.8 8.3 30 307-336 21-50 (211)
326 3foz_A TRNA delta(2)-isopenten 95.4 0.0085 2.9E-07 61.7 3.8 24 661-684 12-35 (316)
327 1v5w_A DMC1, meiotic recombina 95.4 0.023 7.9E-07 59.9 7.3 26 310-335 121-146 (343)
328 2yvu_A Probable adenylyl-sulfa 95.4 0.0096 3.3E-07 56.6 3.9 27 311-337 13-39 (186)
329 1ukz_A Uridylate kinase; trans 95.4 0.0074 2.5E-07 58.2 3.1 24 312-335 16-39 (203)
330 2qor_A Guanylate kinase; phosp 95.3 0.0081 2.8E-07 58.2 3.3 26 310-335 11-36 (204)
331 1e4v_A Adenylate kinase; trans 95.3 0.0075 2.6E-07 58.9 3.1 23 313-335 2-24 (214)
332 3ney_A 55 kDa erythrocyte memb 95.3 0.01 3.5E-07 57.2 4.0 23 661-683 21-43 (197)
333 1ly1_A Polynucleotide kinase; 95.3 0.0074 2.5E-07 56.7 2.9 21 313-333 4-24 (181)
334 1w36_D RECD, exodeoxyribonucle 95.3 0.041 1.4E-06 62.7 9.5 27 311-337 164-190 (608)
335 2eyu_A Twitching motility prot 95.3 0.011 3.9E-07 59.7 4.3 29 308-336 22-50 (261)
336 3cr8_A Sulfate adenylyltranfer 95.3 0.041 1.4E-06 61.7 9.2 59 278-336 333-394 (552)
337 2oap_1 GSPE-2, type II secreti 95.3 0.013 4.3E-07 65.3 5.0 38 661-698 262-299 (511)
338 1vma_A Cell division protein F 95.3 0.015 5.2E-07 60.2 5.3 39 658-696 103-141 (306)
339 3nwj_A ATSK2; P loop, shikimat 95.2 0.012 4.2E-07 59.0 4.3 25 311-335 48-72 (250)
340 2ga8_A Hypothetical 39.9 kDa p 95.2 0.013 4.4E-07 61.6 4.6 40 296-335 5-48 (359)
341 3umf_A Adenylate kinase; rossm 95.2 0.012 4E-07 57.8 4.0 23 313-335 31-53 (217)
342 4eaq_A DTMP kinase, thymidylat 95.2 0.014 4.9E-07 57.7 4.6 25 661-685 28-52 (229)
343 2og2_A Putative signal recogni 95.2 0.059 2E-06 56.9 9.6 34 658-691 156-189 (359)
344 2eyu_A Twitching motility prot 95.2 0.013 4.5E-07 59.2 4.4 26 660-685 26-51 (261)
345 1gvn_B Zeta; postsegregational 95.2 0.0087 3E-07 61.5 3.1 25 311-335 33-57 (287)
346 1w4r_A Thymidine kinase; type 95.2 0.0089 3E-07 57.3 2.9 25 313-337 22-47 (195)
347 2vli_A Antibiotic resistance p 95.2 0.0073 2.5E-07 57.0 2.3 25 311-335 5-29 (183)
348 1znw_A Guanylate kinase, GMP k 95.1 0.01 3.4E-07 57.7 3.2 23 661-683 22-44 (207)
349 2cvh_A DNA repair and recombin 95.1 0.012 4E-07 57.4 3.6 35 660-697 21-55 (220)
350 1sq5_A Pantothenate kinase; P- 95.1 0.018 6.1E-07 59.8 5.2 38 660-697 81-120 (308)
351 1pzn_A RAD51, DNA repair and r 95.1 0.017 5.9E-07 61.0 5.1 26 310-335 130-155 (349)
352 3kta_A Chromosome segregation 95.1 0.013 4.5E-07 55.3 3.8 28 660-687 27-54 (182)
353 3bh0_A DNAB-like replicative h 95.1 0.03 1E-06 58.3 6.8 27 311-337 68-94 (315)
354 2dr3_A UPF0273 protein PH0284; 95.1 0.015 5.1E-07 57.7 4.4 37 660-696 24-60 (247)
355 2xb4_A Adenylate kinase; ATP-b 95.1 0.013 4.3E-07 57.7 3.7 23 313-335 2-24 (223)
356 1x6v_B Bifunctional 3'-phospho 95.1 0.015 5.3E-07 65.8 4.9 34 661-694 54-87 (630)
357 2ehv_A Hypothetical protein PH 95.0 0.011 3.8E-07 58.7 3.3 23 660-682 31-53 (251)
358 3cmu_A Protein RECA, recombina 95.0 0.015 5.2E-07 73.7 5.2 39 660-698 1428-1466(2050)
359 2ewv_A Twitching motility prot 95.0 0.012 4E-07 62.9 3.6 30 308-337 133-162 (372)
360 1z6g_A Guanylate kinase; struc 95.0 0.011 3.9E-07 57.9 3.2 23 661-683 25-47 (218)
361 1kgd_A CASK, peripheral plasma 95.0 0.01 3.6E-07 56.2 2.9 25 311-335 5-29 (180)
362 3eph_A TRNA isopentenyltransfe 95.0 0.036 1.2E-06 59.2 7.2 23 313-335 4-26 (409)
363 1vma_A Cell division protein F 95.0 0.04 1.4E-06 57.0 7.3 26 312-337 105-130 (306)
364 4a74_A DNA repair and recombin 94.9 0.012 4.1E-07 57.7 3.3 25 660-684 26-50 (231)
365 2gxq_A Heat resistant RNA depe 94.9 0.14 4.9E-06 48.9 11.0 25 311-335 38-63 (207)
366 2jaq_A Deoxyguanosine kinase; 94.9 0.016 5.3E-07 55.7 4.0 23 313-335 2-24 (205)
367 2plr_A DTMP kinase, probable t 94.9 0.012 4.2E-07 56.8 3.2 24 312-335 5-28 (213)
368 1n0w_A DNA repair protein RAD5 94.9 0.019 6.5E-07 56.7 4.6 38 660-697 25-68 (243)
369 3hr8_A Protein RECA; alpha and 94.9 0.02 6.9E-07 60.5 4.9 38 660-697 62-99 (356)
370 2pbr_A DTMP kinase, thymidylat 94.9 0.021 7.2E-07 54.3 4.7 24 314-337 3-26 (195)
371 2i1q_A DNA repair and recombin 94.8 0.018 6.3E-07 60.0 4.5 112 309-429 96-255 (322)
372 2ffh_A Protein (FFH); SRP54, s 94.8 0.19 6.4E-06 54.3 12.4 41 658-698 97-137 (425)
373 1uj2_A Uridine-cytidine kinase 94.8 0.016 5.4E-07 58.2 3.7 37 661-698 24-66 (252)
374 1xx6_A Thymidine kinase; NESG, 94.8 0.0093 3.2E-07 57.3 1.9 25 314-338 11-35 (191)
375 1rz3_A Hypothetical protein rb 94.8 0.038 1.3E-06 53.3 6.3 42 296-337 4-48 (201)
376 2if2_A Dephospho-COA kinase; a 94.8 0.014 4.8E-07 56.3 3.2 22 313-335 3-24 (204)
377 2wwf_A Thymidilate kinase, put 94.8 0.014 4.7E-07 56.5 3.1 26 311-336 10-35 (212)
378 3kl4_A SRP54, signal recogniti 94.8 0.026 8.9E-07 61.2 5.5 38 659-696 97-134 (433)
379 1nn5_A Similar to deoxythymidy 94.8 0.014 4.9E-07 56.5 3.2 27 311-337 9-35 (215)
380 1cke_A CK, MSSA, protein (cyti 94.7 0.017 5.9E-07 56.6 3.8 24 312-335 6-29 (227)
381 1lvg_A Guanylate kinase, GMP k 94.7 0.016 5.5E-07 55.9 3.5 25 311-335 4-28 (198)
382 2v3c_C SRP54, signal recogniti 94.7 0.03 1E-06 60.9 6.0 37 660-696 100-136 (432)
383 3tau_A Guanylate kinase, GMP k 94.7 0.012 4E-07 57.3 2.4 26 310-335 7-32 (208)
384 2z0h_A DTMP kinase, thymidylat 94.7 0.018 6.2E-07 54.9 3.7 25 314-338 3-27 (197)
385 4e22_A Cytidylate kinase; P-lo 94.7 0.019 6.4E-07 57.7 4.0 22 661-682 29-50 (252)
386 3jvv_A Twitching mobility prot 94.7 0.021 7.1E-07 60.5 4.4 39 660-698 124-164 (356)
387 3c8u_A Fructokinase; YP_612366 94.6 0.016 5.5E-07 56.3 3.2 39 298-336 7-47 (208)
388 3b6e_A Interferon-induced heli 94.6 0.082 2.8E-06 50.9 8.4 25 311-335 48-72 (216)
389 2pez_A Bifunctional 3'-phospho 94.6 0.026 9E-07 53.1 4.6 27 311-337 5-31 (179)
390 2bbw_A Adenylate kinase 4, AK4 94.6 0.017 5.7E-07 57.7 3.3 25 311-335 27-51 (246)
391 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.028 9.7E-07 58.9 5.1 38 661-698 173-210 (330)
392 1p9r_A General secretion pathw 94.6 0.031 1.1E-06 60.5 5.5 32 660-691 168-199 (418)
393 3p32_A Probable GTPase RV1496/ 94.6 0.093 3.2E-06 55.4 9.2 26 312-337 80-105 (355)
394 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.015 5.3E-07 60.9 3.1 26 310-335 170-195 (330)
395 3zvl_A Bifunctional polynucleo 94.5 0.018 6.2E-07 62.4 3.6 33 661-698 260-292 (416)
396 3d3q_A TRNA delta(2)-isopenten 94.5 0.02 7E-07 59.9 3.9 23 313-335 9-31 (340)
397 2v54_A DTMP kinase, thymidylat 94.5 0.014 4.8E-07 56.1 2.5 25 311-335 4-28 (204)
398 2grj_A Dephospho-COA kinase; T 94.5 0.022 7.6E-07 54.7 3.8 23 313-335 14-36 (192)
399 2ius_A DNA translocase FTSK; n 94.5 0.11 3.9E-06 57.3 9.9 72 384-467 299-374 (512)
400 3ney_A 55 kDa erythrocyte memb 94.5 0.019 6.4E-07 55.4 3.2 26 310-335 18-43 (197)
401 1q3t_A Cytidylate kinase; nucl 94.5 0.025 8.7E-07 56.0 4.3 23 661-683 18-40 (236)
402 1sky_E F1-ATPase, F1-ATP synth 94.5 0.062 2.1E-06 58.5 7.5 27 310-336 150-176 (473)
403 2j37_W Signal recognition part 94.4 0.072 2.5E-06 58.9 8.2 37 658-694 100-136 (504)
404 2ewv_A Twitching motility prot 94.4 0.025 8.5E-07 60.3 4.4 27 660-686 137-163 (372)
405 1s96_A Guanylate kinase, GMP k 94.4 0.019 6.6E-07 56.3 3.2 23 661-683 18-40 (219)
406 1u94_A RECA protein, recombina 94.4 0.025 8.6E-07 59.9 4.2 38 660-697 64-101 (356)
407 3io5_A Recombination and repai 94.4 0.047 1.6E-06 56.3 6.1 79 313-396 30-125 (333)
408 1nlf_A Regulatory protein REPA 94.4 0.03 1E-06 57.0 4.7 24 661-684 32-55 (279)
409 3fe2_A Probable ATP-dependent 94.4 0.25 8.6E-06 48.7 11.4 19 311-329 66-84 (242)
410 3a00_A Guanylate kinase, GMP k 94.4 0.021 7E-07 54.4 3.2 24 313-336 3-26 (186)
411 3lnc_A Guanylate kinase, GMP k 94.3 0.013 4.5E-07 57.8 1.9 23 661-683 29-52 (231)
412 2j37_W Signal recognition part 94.3 0.1 3.4E-06 57.8 9.1 26 312-337 102-127 (504)
413 1j8m_F SRP54, signal recogniti 94.3 0.065 2.2E-06 55.2 7.1 40 659-698 98-137 (297)
414 2bdt_A BH3686; alpha-beta prot 94.3 0.019 6.4E-07 54.6 2.9 22 313-334 4-25 (189)
415 2f6r_A COA synthase, bifunctio 94.3 0.024 8E-07 58.0 3.7 21 661-681 77-97 (281)
416 3r20_A Cytidylate kinase; stru 94.3 0.025 8.4E-07 56.1 3.7 25 311-335 9-33 (233)
417 3ake_A Cytidylate kinase; CMP 94.3 0.025 8.4E-07 54.5 3.7 23 313-335 4-26 (208)
418 2zr9_A Protein RECA, recombina 94.3 0.028 9.5E-07 59.4 4.3 38 660-697 62-99 (349)
419 2xxa_A Signal recognition part 94.3 0.049 1.7E-06 59.2 6.4 42 657-698 98-140 (433)
420 2j41_A Guanylate kinase; GMP, 94.3 0.021 7.1E-07 55.0 3.0 26 310-335 5-30 (207)
421 2v9p_A Replication protein E1; 94.3 0.028 9.6E-07 58.0 4.1 23 661-683 128-150 (305)
422 3zvl_A Bifunctional polynucleo 94.2 0.036 1.2E-06 60.0 5.2 25 311-335 258-282 (416)
423 3ly5_A ATP-dependent RNA helic 94.2 0.68 2.3E-05 46.3 14.4 18 312-329 92-109 (262)
424 2yhs_A FTSY, cell division pro 94.2 0.28 9.7E-06 53.7 12.1 25 313-337 295-319 (503)
425 3tr0_A Guanylate kinase, GMP k 94.2 0.023 7.9E-07 54.6 3.2 25 311-335 7-31 (205)
426 2grj_A Dephospho-COA kinase; T 94.1 0.028 9.6E-07 54.0 3.6 22 661-682 14-35 (192)
427 3aez_A Pantothenate kinase; tr 94.1 0.032 1.1E-06 57.9 4.4 26 660-685 91-116 (312)
428 1g8f_A Sulfate adenylyltransfe 94.1 0.044 1.5E-06 60.6 5.5 58 279-336 360-420 (511)
429 1jjv_A Dephospho-COA kinase; P 94.1 0.022 7.4E-07 55.0 2.7 21 313-333 4-24 (206)
430 1cr0_A DNA primase/helicase; R 94.1 0.036 1.2E-06 56.9 4.5 27 660-686 36-62 (296)
431 2pl3_A Probable ATP-dependent 94.0 0.55 1.9E-05 45.9 13.0 19 311-329 62-80 (236)
432 2gza_A Type IV secretion syste 94.0 0.04 1.4E-06 58.5 4.8 33 661-694 177-209 (361)
433 2jeo_A Uridine-cytidine kinase 94.0 0.038 1.3E-06 55.1 4.4 23 661-683 27-49 (245)
434 1z6g_A Guanylate kinase; struc 93.9 0.03 1E-06 54.8 3.4 26 310-335 22-47 (218)
435 1uj2_A Uridine-cytidine kinase 93.9 0.029 9.8E-07 56.3 3.3 24 312-335 23-46 (252)
436 2wsm_A Hydrogenase expression/ 93.8 0.03 1E-06 54.5 3.3 39 297-335 16-54 (221)
437 2wsm_A Hydrogenase expression/ 93.8 0.091 3.1E-06 51.0 6.7 27 660-686 31-57 (221)
438 1m8p_A Sulfate adenylyltransfe 93.8 0.046 1.6E-06 61.7 5.1 26 660-685 397-422 (573)
439 3tqf_A HPR(Ser) kinase; transf 93.8 0.035 1.2E-06 51.9 3.4 35 660-694 17-54 (181)
440 4a1f_A DNAB helicase, replicat 93.7 0.037 1.3E-06 58.0 3.8 109 314-430 49-203 (338)
441 3io5_A Recombination and repai 93.7 0.036 1.2E-06 57.2 3.7 39 660-698 29-69 (333)
442 2qmh_A HPR kinase/phosphorylas 93.7 0.026 8.9E-07 54.2 2.4 25 311-335 34-58 (205)
443 3iuy_A Probable ATP-dependent 93.7 0.22 7.5E-06 48.6 9.3 19 311-329 57-75 (228)
444 4b3f_X DNA-binding protein smu 93.7 0.14 4.9E-06 58.6 9.1 39 297-337 193-231 (646)
445 1s96_A Guanylate kinase, GMP k 93.7 0.03 1E-06 55.0 2.8 26 310-335 15-40 (219)
446 4e22_A Cytidylate kinase; P-lo 93.7 0.04 1.4E-06 55.2 3.9 25 311-335 27-51 (252)
447 2h92_A Cytidylate kinase; ross 93.6 0.043 1.5E-06 53.4 4.0 25 311-335 3-27 (219)
448 2axn_A 6-phosphofructo-2-kinas 93.6 0.042 1.5E-06 61.2 4.3 23 661-683 37-59 (520)
449 2j9r_A Thymidine kinase; TK1, 93.6 0.094 3.2E-06 51.0 6.1 25 314-338 31-55 (214)
450 1z6t_A APAF-1, apoptotic prote 93.5 0.07 2.4E-06 60.4 6.1 45 629-680 124-168 (591)
451 3v9p_A DTMP kinase, thymidylat 93.5 0.032 1.1E-06 55.1 2.8 24 661-684 27-50 (227)
452 2hf9_A Probable hydrogenase ni 93.5 0.056 1.9E-06 52.7 4.6 35 301-335 28-62 (226)
453 1vht_A Dephospho-COA kinase; s 93.5 0.038 1.3E-06 53.9 3.3 23 312-335 5-27 (218)
454 1g8f_A Sulfate adenylyltransfe 93.5 0.062 2.1E-06 59.5 5.4 26 660-685 396-421 (511)
455 1qde_A EIF4A, translation init 93.5 0.94 3.2E-05 43.7 13.5 25 311-335 51-76 (224)
456 1xp8_A RECA protein, recombina 93.5 0.04 1.4E-06 58.5 3.7 38 660-697 75-112 (366)
457 3cr8_A Sulfate adenylyltranfer 93.5 0.051 1.7E-06 60.9 4.7 28 660-687 370-397 (552)
458 1gtv_A TMK, thymidylate kinase 93.5 0.019 6.6E-07 55.6 1.1 23 314-336 3-25 (214)
459 1yrb_A ATP(GTP)binding protein 93.5 0.072 2.5E-06 53.3 5.4 36 660-696 15-50 (262)
460 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.053 1.8E-06 49.6 4.0 27 660-686 24-50 (149)
461 1q3t_A Cytidylate kinase; nucl 93.4 0.048 1.7E-06 53.9 4.0 26 310-335 15-40 (236)
462 2onk_A Molybdate/tungstate ABC 93.4 0.044 1.5E-06 54.6 3.6 27 660-686 25-51 (240)
463 2a5y_B CED-4; apoptosis; HET: 93.3 0.095 3.3E-06 58.9 6.7 44 632-681 131-174 (549)
464 1bif_A 6-phosphofructo-2-kinas 93.3 0.045 1.5E-06 60.3 3.9 24 661-684 41-64 (469)
465 1svm_A Large T antigen; AAA+ f 93.3 0.039 1.3E-06 58.8 3.3 28 308-335 166-193 (377)
466 3e1s_A Exodeoxyribonuclease V, 93.3 0.046 1.6E-06 61.7 4.0 29 660-688 205-233 (574)
467 3fmo_B ATP-dependent RNA helic 93.3 0.3 1E-05 50.2 9.8 25 304-328 124-148 (300)
468 1znw_A Guanylate kinase, GMP k 93.3 0.039 1.3E-06 53.4 2.9 26 310-335 19-44 (207)
469 2z43_A DNA repair and recombin 93.3 0.065 2.2E-06 55.9 4.8 24 660-683 108-131 (324)
470 3fvq_A Fe(3+) IONS import ATP- 93.2 0.038 1.3E-06 58.4 3.0 26 661-686 32-57 (359)
471 3lv8_A DTMP kinase, thymidylat 93.2 0.054 1.9E-06 53.7 3.9 26 661-686 29-54 (236)
472 4gp7_A Metallophosphoesterase; 93.2 0.036 1.2E-06 52.0 2.5 21 311-331 9-29 (171)
473 1v5w_A DMC1, meiotic recombina 93.2 0.076 2.6E-06 55.9 5.2 23 660-682 123-145 (343)
474 2zts_A Putative uncharacterize 93.2 0.043 1.5E-06 54.3 3.2 22 661-682 32-53 (251)
475 2xxa_A Signal recognition part 93.2 0.1 3.5E-06 56.7 6.4 28 311-338 100-127 (433)
476 3p32_A Probable GTPase RV1496/ 93.2 0.071 2.4E-06 56.4 5.0 36 660-695 80-115 (355)
477 3b85_A Phosphate starvation-in 93.2 0.038 1.3E-06 53.8 2.6 22 661-682 24-45 (208)
478 1lw7_A Transcriptional regulat 93.1 0.042 1.4E-06 58.4 3.2 26 660-685 171-196 (365)
479 1htw_A HI0065; nucleotide-bind 93.1 0.039 1.3E-06 51.1 2.6 27 309-335 31-57 (158)
480 3ice_A Transcription terminati 93.1 0.16 5.5E-06 53.8 7.4 94 299-397 162-276 (422)
481 2pcj_A ABC transporter, lipopr 93.1 0.037 1.2E-06 54.5 2.5 34 661-695 32-65 (224)
482 1j8m_F SRP54, signal recogniti 93.1 0.11 3.8E-06 53.4 6.2 27 311-337 98-124 (297)
483 3asz_A Uridine kinase; cytidin 93.1 0.044 1.5E-06 53.0 3.0 24 312-335 7-30 (211)
484 2gks_A Bifunctional SAT/APS ki 93.1 0.064 2.2E-06 60.1 4.7 35 660-694 373-407 (546)
485 3bgw_A DNAB-like replicative h 93.1 0.1 3.5E-06 56.9 6.2 114 309-430 195-357 (444)
486 1m8p_A Sulfate adenylyltransfe 93.0 0.18 6.1E-06 56.8 8.3 38 312-356 397-435 (573)
487 2i3b_A HCR-ntpase, human cance 93.0 0.055 1.9E-06 51.7 3.6 24 313-336 3-26 (189)
488 1svi_A GTP-binding protein YSX 93.0 0.046 1.6E-06 51.8 3.0 25 310-334 22-46 (195)
489 2f6r_A COA synthase, bifunctio 93.0 0.049 1.7E-06 55.6 3.4 23 312-335 76-98 (281)
490 2v9p_A Replication protein E1; 93.0 0.049 1.7E-06 56.2 3.4 32 307-339 122-153 (305)
491 3tif_A Uncharacterized ABC tra 93.0 0.04 1.4E-06 54.7 2.6 26 661-686 33-58 (235)
492 2gza_A Type IV secretion syste 93.0 0.12 4.2E-06 54.7 6.5 28 308-335 172-199 (361)
493 1p5z_B DCK, deoxycytidine kina 93.0 0.02 7E-07 57.7 0.4 26 660-685 25-50 (263)
494 1pzn_A RAD51, DNA repair and r 92.9 0.059 2E-06 56.9 3.9 24 660-683 132-155 (349)
495 3e70_C DPA, signal recognition 92.9 0.17 5.9E-06 52.7 7.4 28 310-337 128-155 (328)
496 1ls1_A Signal recognition part 92.9 0.079 2.7E-06 54.5 4.8 39 660-698 99-137 (295)
497 1rif_A DAR protein, DNA helica 92.9 0.69 2.3E-05 46.7 11.9 39 295-336 115-153 (282)
498 3rlf_A Maltose/maltodextrin im 92.9 0.047 1.6E-06 58.1 3.1 33 661-694 31-63 (381)
499 1oix_A RAS-related protein RAB 92.9 0.041 1.4E-06 52.4 2.4 25 661-685 31-55 (191)
500 3bh0_A DNAB-like replicative h 92.9 0.089 3E-06 54.6 5.2 25 660-684 69-93 (315)
No 1
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=3.1e-73 Score=673.40 Aligned_cols=560 Identities=44% Similarity=0.690 Sum_probs=438.7
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 005179 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (710)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (710)
|||++||++++++|..|+++|+++||++|+|||||+|||.++++ .++|..+|+|++.+++++...+++.+..
T Consensus 1 mm~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~------ 74 (758)
T 3pxi_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM------ 74 (758)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT------
T ss_pred CchhhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCC------
Confidence 58999999999999999999999999999999999999999877 7899999999999999999888776431
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhhhhhh
Q 005179 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (710)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l~~~~ 237 (710)
...++||+.+++||+.|+.+|+++|+.||+++|||+||++++++.++++|+++|++.+.+++.+.+...+.
T Consensus 75 --------~~~~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~~- 145 (758)
T 3pxi_A 75 --------SQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSN- 145 (758)
T ss_dssp --------CSSCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCC-
T ss_pred --------CCCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhcCC-
Confidence 23688999999999999999999999999999999999999999999999999999999998877654321
Q ss_pred cccCCCCccccccccccccccccccCCCCCCcchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEE
Q 005179 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (710)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~ 317 (710)
.. .+. . .+ .......+.|++|+.+|++.+++++++++||++++++++.+++.++.++|+||+
T Consensus 146 -~~--~~~---~------~~------~~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~ 207 (758)
T 3pxi_A 146 -ET--GSS---A------AG------TNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI 207 (758)
T ss_dssp -CT--TC--------------------CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEE
T ss_pred -cc--ccc---c------cc------cccchhhhHHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEE
Confidence 00 000 0 00 001124578999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhC
Q 005179 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS 397 (710)
Q Consensus 318 GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~ 397 (710)
||||||||++|+++|+.+.++++|..+.++.++.+++ |.++.|+++.+++.++..+....++|||||
T Consensus 208 G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-------- 274 (758)
T 3pxi_A 208 GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----GTKYRGEFEDRLKKVMDEIRQAGNIILFID-------- 274 (758)
T ss_dssp SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHHHHHHHHHTCCCCEEEEC--------
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----cccccchHHHHHHHHHHHHHhcCCEEEEEc--------
Confidence 9999999999999999999999999999999999987 677899999999999999998889999999
Q ss_pred CCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhc
Q 005179 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (710)
Q Consensus 398 ~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~ 477 (710)
+ ..+.++.|++.++++.+++|++||..+|.+++.++++|.+||+.|.|++|+.+++..||+.+..+++.++
T Consensus 275 ~---------~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~ 345 (758)
T 3pxi_A 275 A---------AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHH 345 (758)
T ss_dssp C-----------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGS
T ss_pred C---------chhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhc
Confidence 1 3457889999999999999999999999999999999999999999999999999999999999888889
Q ss_pred CCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhHHhhhhCCCChHHHHHHHHHHHhhHHHhhc
Q 005179 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557 (710)
Q Consensus 478 ~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 557 (710)
++.++++++..++.++.+|+.++++|++++++++.|++.+++.....+.+. ..+......+..+........++..+.
T Consensus 346 ~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~ 423 (758)
T 3pxi_A 346 RVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNL--KELEQKLDEVRKEKDAAVQSQEFEKAA 423 (758)
T ss_dssp SCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CCT--HHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred CCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCcch--hhHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 999999999999999999999999999999999999999888765544321 011111111111111111111111111
Q ss_pred cccchhhhhccCCcchhhhhccCCCCCCCCCCCcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHH
Q 005179 558 RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEA 637 (710)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a 637 (710)
.+.+....+.. .+......+..........++.+++..+++.|+|+|+..+..++...+..+++.|.+.|+||+++
T Consensus 424 ~l~~~~~~~~~----~l~~~~~~~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a 499 (758)
T 3pxi_A 424 SLRDTEQRLRE----QVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEA 499 (758)
T ss_dssp HHHHHHHHHHH----HHHHHHSGGGHHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHH
Confidence 11110000000 00000000000001124578899999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 638 VAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 638 ~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
++.+..+++..+.|+.+|.+|++++||+||||||||++|++||+.+|+++..++++|||+|..
T Consensus 500 ~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 500 VVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp HHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred HHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 999999999999999999999999999999999999999999999999999999999999965
No 2
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=9.8e-69 Score=635.85 Aligned_cols=530 Identities=37% Similarity=0.577 Sum_probs=456.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCcHHHHHHCCCCHHHHHHHHHHHhhc-CCCCCCchhhhcCCCC
Q 005179 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHS-TNNQDTDDAAAQGKPF 163 (710)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~l~~~gv~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 163 (710)
||++++++|..|+++|+++||++|+|||||+|||.+++..++|..+|+|++.+++++...+++ .+.. .
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~~-----------~ 70 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVL-----------P 70 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCBC-----------C
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHhccCCCC-----------C
Confidence 899999999999999999999999999999999987555889999999999999999999887 4321 1
Q ss_pred C--CCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhhhhhhcccC
Q 005179 164 S--SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEG 241 (710)
Q Consensus 164 ~--~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l~~~~~~~~ 241 (710)
+ ....++||+.++++|+.|+.+|+.+|+.||+++|||+||++++++.+.++|+++|++.+.+.+.+.+.....-...
T Consensus 71 ~~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~~~~~~~~- 149 (758)
T 1r6b_X 71 ASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQ- 149 (758)
T ss_dssp CSSSCCCCEECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC---------
T ss_pred CccccCCCCcCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHhhccccccc-
Confidence 1 1246899999999999999999999999999999999999998888999999999999988776544221100000
Q ss_pred CCCccccccccccccccccccCCCCCCcchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCC
Q 005179 242 REPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321 (710)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG 321 (710)
... .+. . . +.+ +.....+.|++|+.+|++++++++|++++|++++++++++++.+..++|+||+||||
T Consensus 150 ~~~---~~~-~-~-~~~------~~~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~G 217 (758)
T 1r6b_X 150 SSD---PGS-Q-P-NSE------EQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESG 217 (758)
T ss_dssp -------------------------------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTT
T ss_pred ccc---ccc-c-c-ccc------ccccchhHHHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCC
Confidence 000 000 0 0 000 001134679999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCC
Q 005179 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVG 401 (710)
Q Consensus 322 ~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~ 401 (710)
||||++++++++.+.++.+|..+.++.++.+++..+..+.++.|+++.+++.+++.+....+.||||||+|.+++.+..
T Consensus 218 tGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~- 296 (758)
T 1r6b_X 218 VGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA- 296 (758)
T ss_dssp SSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS-
T ss_pred CCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC-
Confidence 9999999999999999999999999999999999999888899999999999999998777899999999999877543
Q ss_pred CCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 005179 402 RGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKF 481 (710)
Q Consensus 402 ~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i 481 (710)
..+..++.+.|+++++++.+++|++|+.++|.+.+..|++|.+||+.|.|++|+.+++.+||+.+...+..++++.+
T Consensus 297 ---~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~ 373 (758)
T 1r6b_X 297 ---SGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRY 373 (758)
T ss_dssp ---SSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ---CcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 13477889999999999999999999999998888999999999999999999999999999999999988899999
Q ss_pred CHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhHHhhhhCCCChHHHHHHHHHHHhhHHHhhccccc
Q 005179 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561 (710)
Q Consensus 482 ~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (710)
+++++..++.++.+|+.++++|+++++++++|++..++...
T Consensus 374 ~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~--------------------------------------- 414 (758)
T 1r6b_X 374 TAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPV--------------------------------------- 414 (758)
T ss_dssp CHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSS---------------------------------------
T ss_pred CHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccc---------------------------------------
Confidence 99999999999999999999999999999999865443200
Q ss_pred hhhhhccCCcchhhhhccCCCCCCCCCCCcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHH
Q 005179 562 DDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAI 641 (710)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i 641 (710)
......|+.++|..+++.|+++|+..+.+++...+..+++.|...|+||+++++.|
T Consensus 415 ------------------------~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l 470 (758)
T 1r6b_X 415 ------------------------SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEAL 470 (758)
T ss_dssp ------------------------CCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHH
T ss_pred ------------------------cccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 00124689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCCcchhhhccc
Q 005179 642 SRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNSVKVALSRQI 709 (710)
Q Consensus 642 ~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~~~~~~~~~~ 709 (710)
..+++..+.|+.+|++|++++||+||||||||++|++||+.+ +..++++|||+|+. ++++++++
T Consensus 471 ~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~-~~~~~~l~ 534 (758)
T 1r6b_X 471 TEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYME-RHTVSRLI 534 (758)
T ss_dssp HHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSS-SSCCSSSC
T ss_pred HHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcc-hhhHhhhc
Confidence 999999999999999999999999999999999999999998 36899999999965 56777664
No 3
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=2.2e-68 Score=638.36 Aligned_cols=579 Identities=41% Similarity=0.567 Sum_probs=443.1
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 005179 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (710)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (710)
|||++||++++++|..|+.+|+++||++|+|||||+|||.++++ .++|..+|+|++.++.++...+++.+..
T Consensus 1 ~~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~------ 74 (854)
T 1qvr_A 1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKV------ 74 (854)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCC------
T ss_pred CChhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHhhCCCC------
Confidence 57899999999999999999999999999999999999999887 7899999999999999999999987642
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhhhhhh
Q 005179 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (710)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l~~~~ 237 (710)
.+....++||+.++++|+.|+.+|+.+|+.||+++|||+||++++++ + ++...++..+.+.. +.
T Consensus 75 -----~~~~~~~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~-~--------~~~~~~~~~~~~~~-~~- 138 (854)
T 1qvr_A 75 -----EGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPG-L--------PGLEALKGALKELR-GG- 138 (854)
T ss_dssp -----CGGGTTCEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTT-S--------CCHHHHHHHHTSSC-SC-
T ss_pred -----CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhcccc-c--------CCHHHHHHHHHHhc-cc-
Confidence 12234689999999999999999999999999999999999997764 2 88888776543321 10
Q ss_pred cccCCCCccccccccccccccccccCCCCCCcchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEE
Q 005179 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (710)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~ 317 (710)
.. .. . ..+ ....+.|++|+.+|++.+++++|+++||++++++++++++.++.++|++|+
T Consensus 139 ----~~-~~----------~-----~~~-~~~~~~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~ 197 (854)
T 1qvr_A 139 ----RT-VQ----------T-----EHA-ESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLI 197 (854)
T ss_dssp ----CS-SC----------S-----SCC-CCCCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEE
T ss_pred ----cc-cc----------c-----ccc-cccchhHHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEE
Confidence 00 00 0 000 113468999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhc-CCeEEEEccchhhhh
Q 005179 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIG 396 (710)
Q Consensus 318 GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~-~~~IL~IDEid~l~~ 396 (710)
||||||||++++++++.+..+.+|..+.+..++.++++.+..|.++.|+++.+++.++..+... ++.||||||+|.+.+
T Consensus 198 G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 198 GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVG 277 (854)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhc
Confidence 9999999999999999999999999888999999999999988889999999999999998875 678999999999986
Q ss_pred CCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhh
Q 005179 397 SGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH 476 (710)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~ 476 (710)
.+.. .+..++.+.|+++++++.+.+|++||.++|.. +.++++|.+||+.|.|++|+.+++..||+.+..+++.+
T Consensus 278 ~~~~-----~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~-~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~ 351 (854)
T 1qvr_A 278 AGKA-----EGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVH 351 (854)
T ss_dssp -------------------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCc-----cchHHHHHHHHHHHhCCCeEEEEecCchHHhh-hccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhh
Confidence 6543 33567888999999999999999999999887 78999999999999999999999999999999999989
Q ss_pred cCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchhhH------------HhhhhCCCC-------
Q 005179 477 HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQ------------QTCILSKPP------- 537 (710)
Q Consensus 477 ~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~~~------------~~~~l~~~~------- 537 (710)
|++.++++++..++.++.+|+.++++|+++++++++|++.+++.....|.+. +...+.++.
T Consensus 352 ~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (854)
T 1qvr_A 352 HGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQER 431 (854)
T ss_dssp TTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSC
T ss_pred cCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 9999999999999999999999999999999999999999998766655431 112233322
Q ss_pred -hHHHHHHHHHHH-------hhH-----------H-----------Hhhccccchh--hhhccC----CcchhhhhccCC
Q 005179 538 -DDYWQEIRTVQA-------MHE-----------V-----------VQGSRLKYDD--VVASMG----DTSEIVVESSLP 581 (710)
Q Consensus 538 -~~~~~~~~~~~~-------~~~-----------~-----------~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~ 581 (710)
..+.+++.+++. .++ . ..+....+.. ..+... ...++......
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 510 (854)
T 1qvr_A 432 LKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK- 510 (854)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhh-
Confidence 111111111110 000 0 0000000000 000000 00000000000
Q ss_pred CCCCCCCCCcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 005179 582 SASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAA 661 (710)
Q Consensus 582 ~~~~~~~~~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~ 661 (710)
..........++.+++..+++.|+|+|..++...+...+.++++.+.+.|+||++++..+...++..+.|+.+|++|+++
T Consensus 511 ~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~ 590 (854)
T 1qvr_A 511 LRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGS 590 (854)
T ss_dssp SSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEE
T ss_pred hcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceE
Confidence 01112234679999999999999999999988778888888999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCCcchhhhccc
Q 005179 662 MLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNSVKVALSRQI 709 (710)
Q Consensus 662 ~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~~~~~~~~~~ 709 (710)
+||+||||||||++|++||+.+|+++..++++||+++.. .+++++++
T Consensus 591 vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~-~~~~s~l~ 637 (854)
T 1qvr_A 591 FLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME-KHAVSRLI 637 (854)
T ss_dssp EEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS-SGGGGGC-
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc-hhHHHHHc
Confidence 999999999999999999999999999999999999954 45566543
No 4
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=100.00 E-value=9.8e-60 Score=526.42 Aligned_cols=392 Identities=47% Similarity=0.759 Sum_probs=335.0
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 005179 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (710)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (710)
|||++||++++++|..|+++|+++||++|+|||||+|||.++++ .++|..+|+|++.+++++...+++.+..
T Consensus 1 mm~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~------ 74 (468)
T 3pxg_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM------ 74 (468)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT------
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhcccCCC------
Confidence 49999999999999999999999999999999999999999887 7899999999999999999887765421
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhhhhhh
Q 005179 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (710)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l~~~~ 237 (710)
...++||+.++++|+.|+.+|+++|+.||+++|||+||++++++.++++|.++|++.+.++..+.+...+.
T Consensus 75 --------~~~~~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~~- 145 (468)
T 3pxg_A 75 --------SQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSN- 145 (468)
T ss_dssp --------CSSCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCC-
T ss_pred --------CCCCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhccC-
Confidence 23588999999999999999999999999999999999999999999999999999999998876654221
Q ss_pred cccCCCCccccccccccccccccccCCCCCCcchhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEE
Q 005179 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (710)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~ 317 (710)
.... .. . . .......+.|++|+.+|++++++++++++||++++++++++++.++.++|+||+
T Consensus 146 ----~~~~--~~----~-~-------~~~~~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~ 207 (468)
T 3pxg_A 146 ----ETGS--SA----A-G-------TNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI 207 (468)
T ss_dssp ----CTTC-------------------CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEE
T ss_pred ----cccc--cc----c-C-------cCCccCchHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEE
Confidence 0000 00 0 0 001124578999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhC
Q 005179 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS 397 (710)
Q Consensus 318 GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~ 397 (710)
||||||||++|+++++.+..+.+|..+.+..++.++++ .++.|+++.+++.++..+...++.|||||
T Consensus 208 G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-------- 274 (468)
T 3pxg_A 208 GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQAGNIILFID-------- 274 (468)
T ss_dssp SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHHHHHHHHHTCCCCEEEEC--------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----ccccchHHHHHHHHHHHHHhcCCeEEEEe--------
Confidence 99999999999999999999999999999999999886 45778888889999999988888999999
Q ss_pred CCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhc
Q 005179 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (710)
Q Consensus 398 ~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~ 477 (710)
+ ..++++.|++.++++.+++|++||..+|.+++.++++|.+||+.|.|++|+.+++..||+.+..+|+.+|
T Consensus 275 ~---------~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~ 345 (468)
T 3pxg_A 275 A---------AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHH 345 (468)
T ss_dssp C-----------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGS
T ss_pred C---------chhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhc
Confidence 1 3457899999999999999999999999999999999999999999999999999999999999888889
Q ss_pred CCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhhhhhhchh
Q 005179 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKK 526 (710)
Q Consensus 478 ~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~~~~~~~~ 526 (710)
++.++++++..++.++.+|+.++++|++++++++.+++++++.....|.
T Consensus 346 ~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~ 394 (468)
T 3pxg_A 346 RVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPP 394 (468)
T ss_dssp SCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCch
Confidence 9999999999999999999999999999999999999988887665554
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=3.3e-32 Score=316.11 Aligned_cols=315 Identities=23% Similarity=0.271 Sum_probs=214.1
Q ss_pred cCCCCcccCHHHHHHHHHHHH----c---------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILC----R---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~----~---------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-+|+++.|.++.++.|.+++. . ..+.++|||||||||||++|+++|.++ +.+++.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~ 270 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 270 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEE
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEE
Confidence 357789998877777766532 1 345789999999999999999999988 88999999
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc----cCCCeEEEEc
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL----GRGELQCIAS 429 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l----~~~~v~vI~a 429 (710)
+..+. .++.|+.+..++.+|..+....|+||||||+|.|+.....+.+ +....+.+.|+..| +++.+.||++
T Consensus 271 ~~~l~--sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~--~~~~riv~~LL~~mdg~~~~~~V~VIaa 346 (806)
T 3cf2_A 271 GPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (806)
T ss_dssp HHHHH--SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC--TTHHHHHHHHHTHHHHCCGGGCEEEEEE
T ss_pred hHHhh--cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCC--hHHHHHHHHHHHHHhcccccCCEEEEEe
Confidence 99988 5688999999999999999999999999999999876543221 33344555554444 4578999999
Q ss_pred cChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHHhhhhhcCCCCcch
Q 005179 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLPDK 505 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~-~l~~l~~ls~~~i~~r~~p~~ 505 (710)
||..+ .+|++|+| ||+ .|.|+.|+.++|.+||+.+.... .+.++ .+..++..+.+|.+ .+
T Consensus 347 TN~~d-----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~------~~~~dvdl~~lA~~T~Gfsg-----aD 410 (806)
T 3cf2_A 347 TNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM------KLADDVDLEQVANETHGHVG-----AD 410 (806)
T ss_dssp CSSTT-----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS------EECTTCCHHHHHHHCCSCCH-----HH
T ss_pred cCChh-----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC------CCCcccCHHHHHHhcCCCCH-----HH
Confidence 99987 79999999 997 89999999999999998765422 22222 36778888777754 55
Q ss_pred HHHHHHHHHhhhhhhhhhchhhHHhhhhCCCChHHHHHHHHHHHhhHHHhhccccchhhhhccCCcchhhhhccCCCCCC
Q 005179 506 AIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASD 585 (710)
Q Consensus 506 ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (710)
...++++|+..+..+...... +... ....+ .
T Consensus 411 L~~Lv~eA~~~A~~r~~~~i~------~~~~--------------------------------~~~~e--~--------- 441 (806)
T 3cf2_A 411 LAALCSEAALQAIRKKMDLID------LEDE--------------------------------TIDAE--V--------- 441 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHGG------GTCC--------------------------------CCSHH--H---------
T ss_pred HHHHHHHHHHHHHHhcccccc------cccc--------------------------------ccchh--h---------
Confidence 666777776443222110000 0000 00000 0
Q ss_pred CCCCCcCCHHHHHHHHHhhhC-------CChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHH----hhcCCCC
Q 005179 586 DDEPAVVGPDDIAAVASLWSG-------IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKR----SRVGLKD 654 (710)
Q Consensus 586 ~~~~~~v~~~di~~~~s~~~g-------ip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~----~r~gl~~ 654 (710)
.....|+.+|+..++..... +...+++|++ |+|++++++.+...+.+ .....+.
T Consensus 442 -~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~d--------------iggl~~~k~~l~e~v~~p~~~p~~f~~~ 506 (806)
T 3cf2_A 442 -MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWED--------------IGGLEDVKRELQELVQYPVEHPDKFLKF 506 (806)
T ss_dssp -HHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTT--------------CCSCHHHHHHHTTTTTTTTTCSGGGSSS
T ss_pred -hccceeeHHHHHHHHHhCCCcccccccccCCCCCHHH--------------hCCHHHHHHHHHHHHHhhhhCHHHHHhc
Confidence 00134566666666644321 1223566665 55555666555554432 2211111
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 655 PNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 655 p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
..+|..++|||||||||||++||+||.+ .+.+++.++.+++
T Consensus 507 g~~~~~gvLl~GPPGtGKT~lAkaiA~e---~~~~f~~v~~~~l 547 (806)
T 3cf2_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANE---CQANFISIKGPEL 547 (806)
T ss_dssp CCCCCSCCEEESSTTSSHHHHHHHHHHT---TTCEEEECCHHHH
T ss_pred CCCCCceEEEecCCCCCchHHHHHHHHH---hCCceEEeccchh
Confidence 2234468999999999999999999999 4567888876654
No 6
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.93 E-value=3.2e-25 Score=207.66 Aligned_cols=141 Identities=31% Similarity=0.559 Sum_probs=130.9
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 005179 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (710)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (710)
.||++||++++++|..|+++|+++||++|+|||||+||+.++++ .++|..+|+|++.+++++...+++.+.
T Consensus 2 ~m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~------- 74 (146)
T 3fh2_A 2 AMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQ------- 74 (146)
T ss_dssp GGGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSC-------
T ss_pred chhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCC-------
Confidence 69999999999999999999999999999999999999998776 789999999999999999999987753
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhh
Q 005179 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (710)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l 233 (710)
+.+..+++|+.++++|+.|+.+|+++|+.||+++|||+||++++++.+.++|+++||+.+.+++.+.+.+
T Consensus 75 ------~~~~~~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~ 144 (146)
T 3fh2_A 75 ------PTTGHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLL 144 (146)
T ss_dssp ------CCCSCCCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ------CCcCCCcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 2235689999999999999999999999999999999999999889999999999999999998887655
No 7
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.91 E-value=1.8e-24 Score=202.35 Aligned_cols=140 Identities=28% Similarity=0.442 Sum_probs=128.3
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 005179 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (710)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (710)
..|++||++++++|..|+++|+++||++|+|||||+|||.++++ .++|..+|+|++.+++.+...+++.+.
T Consensus 3 ~~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~------- 75 (145)
T 3fes_A 3 ANFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEE------- 75 (145)
T ss_dssp -CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCCCSC-------
T ss_pred CcccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHhcCCC-------
Confidence 46789999999999999999999999999999999999999877 789999999999999999999987642
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhh
Q 005179 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (710)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l 233 (710)
.+..++||+.++++|+.|..+|+++|+.||+++|||+||++++++.+.++|+++||+.+.+++.+.+.+
T Consensus 76 -------~~~~~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~~ 144 (145)
T 3fes_A 76 -------ISEDIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDMM 144 (145)
T ss_dssp -------CCSCCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 124689999999999999999999999999999999999999989999999999999999998876543
No 8
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=9.3e-25 Score=258.19 Aligned_cols=318 Identities=23% Similarity=0.244 Sum_probs=204.1
Q ss_pred hcCCCCcccCHHHHHHHHHHHHc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe
Q 005179 286 EELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (710)
Q Consensus 286 ~~~l~~liGr~~~i~~l~~~L~~-------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l 352 (710)
.-.|++++|.+++++++.+.+.. ..+.+++|+||||||||+++++|+..+ +..++.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~v 269 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLI 269 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEEE
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEEEE
Confidence 45688999999999888887643 445789999999999999999999877 6677888
Q ss_pred ehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc----cCCCeEEEE
Q 005179 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL----GRGELQCIA 428 (710)
Q Consensus 353 d~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l----~~~~v~vI~ 428 (710)
++..+. ..+.++.+..+..+|+.+....++++||||++.+........+ +....+.+.|..++ .+..+.+|+
T Consensus 270 ~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~--~~~~~~~~~Ll~ll~g~~~~~~v~vI~ 345 (806)
T 1ypw_A 270 NGPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp EHHHHS--SSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCS--HHHHHHHHHHHHHHHSSCTTSCCEEEE
T ss_pred EchHhh--hhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccc--hHHHHHHHHHHHHhhhhcccccEEEec
Confidence 888776 4567889999999999998888999999999999765432111 11223344444433 356789999
Q ss_pred ccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcch
Q 005179 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ 505 (710)
+|+..+ .+++++.+ ||. .+.+..|+.+++.+||+.+..++.... +..+..++..+.+|.. ..
T Consensus 346 atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~-----~~~l~~la~~t~g~~g-----~d 410 (806)
T 1ypw_A 346 ATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-----DVDLEQVANETHGHVG-----AD 410 (806)
T ss_dssp ECSCTT-----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCT-----TCCTHHHHHSCSSCCH-----HH
T ss_pred ccCCch-----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcc-----cchhHHHHHhhcCcch-----HH
Confidence 999875 68899988 896 789999999999999987665332111 1123445555444432 33
Q ss_pred HHHHHHHHHhhhhhhhhhchhhHHhhhhCCCChHHHHHHHHHHHhhHHHhhccccchhhhhccCCcchhhhhccCCCCCC
Q 005179 506 AIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASD 585 (710)
Q Consensus 506 ai~ll~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (710)
...++..+...+......... ..+ ..+ ....
T Consensus 411 l~~l~~ea~~~a~r~~~~~i~----------~~~------------------------~~~--------~~~~------- 441 (806)
T 1ypw_A 411 LAALCSEAALQAIRKKMDLID----------LED------------------------ETI--------DAEV------- 441 (806)
T ss_dssp HHHHHHHHHHHHHHHTTTTTS----------CHH------------------------HHC--------CHHH-------
T ss_pred HHHHHHHHHHHHHhhhccccc----------hhh------------------------hcc--------chhh-------
Confidence 333444443221111000000 000 000 0000
Q ss_pred CCCCCcCCHHHHHHHHHhhhC-------CChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHh----hcCCCC
Q 005179 586 DDEPAVVGPDDIAAVASLWSG-------IPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRS----RVGLKD 654 (710)
Q Consensus 586 ~~~~~~v~~~di~~~~s~~~g-------ip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~----r~gl~~ 654 (710)
.....++.+++..++..... +....+.| ..++|++++++.+...+.+. ..+.+.
T Consensus 442 -~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~--------------~di~gl~~vk~~l~~~v~~~~~~~~~~~~~ 506 (806)
T 1ypw_A 442 -MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTW--------------EDIGGLEDVKRELQELVQYPVEHPDKFLKF 506 (806)
T ss_dssp -HTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSS--------------CSSSCCCCHHHHHHTTTTSSSSSCTTTTCC
T ss_pred -hhhhhhhhhhhhccccccCchhhhhhcccCccccc--------------cccccchhhhhhHHHHHHhhhhchHHHHhc
Confidence 00123444455544433221 11122333 34788888888877665432 222222
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 655 PNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 655 p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
..+|..++|||||||||||+|||+||..+ ...+++++++++.
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELL 548 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHH---TCCCCCCCCSSST
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHh---CCCEEEEechHhh
Confidence 33445689999999999999999999997 3578999988864
No 9
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.90 E-value=1.6e-23 Score=197.15 Aligned_cols=140 Identities=32% Similarity=0.524 Sum_probs=124.7
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 005179 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (710)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (710)
|||++||++++++|..|+++|+++||++|+|||||+|||.++++ .++|..+|+|++.++.++...+++.+..
T Consensus 1 M~~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~~~------ 74 (150)
T 2y1q_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRAQEM------ 74 (150)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC---------
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccCCcc------
Confidence 57899999999999999999999999999999999999999887 7899999999999999999999877532
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhh
Q 005179 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (710)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l 233 (710)
.+.++||+.++++|+.|+.+|+++|+.||+++|||+||++++++.+.++|+.+|++.+.++..+....
T Consensus 75 --------~~~~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~ 142 (150)
T 2y1q_A 75 --------SQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142 (150)
T ss_dssp ----------CCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred --------cccCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 13688999999999999999999999999999999999998888888999999999999988776554
No 10
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.90 E-value=3e-23 Score=194.88 Aligned_cols=140 Identities=18% Similarity=0.237 Sum_probs=121.2
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 005179 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (710)
Q Consensus 80 ~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (710)
|||++||++++++|..|+.+|+++||++|+|||||+|||.++++ .++|..+|+|++.++..+...+++.|..
T Consensus 1 M~~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~p~~------ 74 (148)
T 1khy_A 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQV------ 74 (148)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCCC------
T ss_pred CChhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHHhCCCC------
Confidence 57899999999999999999999999999999999999999877 7899999999999999999999887642
Q ss_pred hcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHH
Q 005179 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVS 231 (710)
Q Consensus 158 ~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~ 231 (710)
.+....++||+.++++|+.|+.+|+.+|+.||+++|||+||+ ++++.+.++|+.+|++.+.++..+..
T Consensus 75 -----~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall-~~~~~~~~~L~~~gi~~~~l~~~l~~ 142 (148)
T 1khy_A 75 -----EGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQ 142 (148)
T ss_dssp ------------CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH-TSCHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred -----CCCCCCcCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH-cCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 122246899999999999999999999999999999999999 45678899999999999999876543
No 11
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.6e-22 Score=216.65 Aligned_cols=200 Identities=23% Similarity=0.275 Sum_probs=155.5
Q ss_pred hcCCCCcccCHHHHHHHHHHH-------------HcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe
Q 005179 286 EELIDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (710)
Q Consensus 286 ~~~l~~liGr~~~i~~l~~~L-------------~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l 352 (710)
.-+|+++.|.++.++.|.+.+ ....++++|||||||||||++|+++|.++ +..++.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~v 213 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIRV 213 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceEE
Confidence 347899999999888877643 22456889999999999999999999999 8899999
Q ss_pred ehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhH---HHhhcccc----cCCCeE
Q 005179 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI---SNLLKPSL----GRGELQ 425 (710)
Q Consensus 353 d~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~---~~~L~~~l----~~~~v~ 425 (710)
+.+.+. .++.|+.+..++.+|..++...|+||||||+|.+++.+..+.+ ++.... .+.|+..| ....+.
T Consensus 214 ~~s~l~--sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 214 SGAELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSG--GGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp EGGGGS--CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSS--GGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred EhHHhh--ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCC--CCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 999888 6789999999999999999999999999999999876543222 122222 22333222 356789
Q ss_pred EEEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHHhhhhhcCCC
Q 005179 426 CIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRY 501 (710)
Q Consensus 426 vI~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~-~l~~l~~ls~~~i~~r~ 501 (710)
||+|||.++ .+|++|.| ||+ .|.|+.|+.++|.+||+.+.++. .++++ .++.++..+.+|.+
T Consensus 290 vIaATNrpd-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~------~l~~dvdl~~lA~~t~G~SG--- 355 (405)
T 4b4t_J 290 IIMATNRLD-----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM------NLTRGINLRKVAEKMNGCSG--- 355 (405)
T ss_dssp EEEEESCSS-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS------BCCSSCCHHHHHHHCCSCCH---
T ss_pred EEeccCChh-----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC------CCCccCCHHHHHHHCCCCCH---
Confidence 999999987 89999999 998 89999999999999998776532 23222 26778888777644
Q ss_pred CcchHHHHHHHHHh
Q 005179 502 LPDKAIDLVDEAGS 515 (710)
Q Consensus 502 ~p~~ai~ll~~a~~ 515 (710)
.+...++.+|+.
T Consensus 356 --ADi~~l~~eA~~ 367 (405)
T 4b4t_J 356 --ADVKGVCTEAGM 367 (405)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 455666776653
No 12
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.4e-22 Score=214.55 Aligned_cols=200 Identities=24% Similarity=0.292 Sum_probs=154.6
Q ss_pred hcCCCCcccCHHHHHHHHHHHH-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe
Q 005179 286 EELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (710)
Q Consensus 286 ~~~l~~liGr~~~i~~l~~~L~-------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l 352 (710)
.-+|+++.|.++.++.|.+.+. .+.+.++|||||||||||++|+++|.++ +..++.+
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~v 247 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT----------SATFLRI 247 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh----------CCCEEEE
Confidence 3478899999998888776532 2456789999999999999999999999 8899999
Q ss_pred ehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHH---Hhhcccc----cCCCeE
Q 005179 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDIS---NLLKPSL----GRGELQ 425 (710)
Q Consensus 353 d~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~---~~L~~~l----~~~~v~ 425 (710)
+.+.+. .++.|+.+..++.+|..+....|+||||||+|.++..+..+.. .+..... +.|+..+ ..++++
T Consensus 248 ~~s~l~--sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~--~~~~~~~~~l~~LL~~lDg~~~~~~Vi 323 (437)
T 4b4t_I 248 VGSELI--QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS--GGEREIQRTMLELLNQLDGFDDRGDVK 323 (437)
T ss_dssp ESGGGC--CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSC--SSCCHHHHHHHHHHHHHHHCCCSSSEE
T ss_pred EHHHhh--hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCC--CccHHHHHHHHHHHHHhhCcCCCCCEE
Confidence 998888 6789999999999999999999999999999999876543222 1222222 2222222 256799
Q ss_pred EEEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHHhhhhhcCCC
Q 005179 426 CIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRY 501 (710)
Q Consensus 426 vI~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~-~l~~l~~ls~~~i~~r~ 501 (710)
||+|||.++ .+|++|.| ||+ .|.|+.|+.++|.+||+.++.+. .++++ .++.++..+.+|.+
T Consensus 324 VIaATNrpd-----~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~------~l~~dvdl~~LA~~T~GfSG--- 389 (437)
T 4b4t_I 324 VIMATNKIE-----TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM------NLSEDVNLETLVTTKDDLSG--- 389 (437)
T ss_dssp EEEEESCST-----TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS------CBCSCCCHHHHHHHCCSCCH---
T ss_pred EEEeCCChh-----hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC------CCCCcCCHHHHHHhCCCCCH---
Confidence 999999987 89999999 998 89999999999999998776532 33332 26778888777644
Q ss_pred CcchHHHHHHHHHh
Q 005179 502 LPDKAIDLVDEAGS 515 (710)
Q Consensus 502 ~p~~ai~ll~~a~~ 515 (710)
.+...++.+|+.
T Consensus 390 --ADI~~l~~eA~~ 401 (437)
T 4b4t_I 390 --ADIQAMCTEAGL 401 (437)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 455566666653
No 13
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.88 E-value=3.1e-22 Score=194.76 Aligned_cols=191 Identities=56% Similarity=0.930 Sum_probs=161.6
Q ss_pred hhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEE
Q 005179 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (710)
Q Consensus 271 ~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~ 350 (710)
+.|++++.+|.+.+++..+++++|++++++++.+.+....+.+++|+||||||||++++.+++.+.....+....+..++
T Consensus 3 ~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 3 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp HHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred hHHHHHhHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 56899999999999999999999999999999999988778899999999999999999999999887777666788999
Q ss_pred EeehhhhhhccccCccHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEc
Q 005179 351 SLDMGLLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429 (710)
Q Consensus 351 ~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~a 429 (710)
.+++..+..+....+.+...+..++..+.. ..+.||||||+|.+...+.. ....++.+.|+.+++.+++.+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~-----~~~~~~~~~l~~~~~~~~~~~i~~ 157 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-----DGAMDAGNMLKPALARGELHCVGA 157 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-----------CCCCHHHHHHHHHTTSCCEEEE
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc-----cchHHHHHHHHHhhccCCeEEEEe
Confidence 999988887666777788888888887754 45779999999999654321 123345677778888889999999
Q ss_pred cChHHHHhhhhccHHHHccccceEecCCCHHHHHHHH
Q 005179 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRIL 466 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL 466 (710)
++..++.....+++++.+||..|.+++|+.+++.+||
T Consensus 158 ~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 9998887777889999999999999999999988775
No 14
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.3e-21 Score=212.21 Aligned_cols=199 Identities=21% Similarity=0.233 Sum_probs=154.0
Q ss_pred cCCCCcccCHHHHHHHHHHH-------------HcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L-------------~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-+|+++.|.++.++.|.+.+ ....++++|||||||||||++|+++|.++ +..++.++
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs 275 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVI 275 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEE
Confidence 47899999999888887642 22467889999999999999999999999 88999999
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhH---HHhhccc----ccCCCeEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI---SNLLKPS----LGRGELQC 426 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~---~~~L~~~----l~~~~v~v 426 (710)
.+.+. .++.|+.+..++.+|..+....|+||||||+|.++..+..+.+ +..... .+.|+.. -..+.++|
T Consensus 276 ~s~L~--sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~~lDg~~~~~~ViV 351 (467)
T 4b4t_H 276 GSELV--QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGA--GGDNEVQRTMLELITQLDGFDPRGNIKV 351 (467)
T ss_dssp GGGGC--CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSC--GGGGHHHHHHHHHHHHHHSSCCTTTEEE
T ss_pred hHHhh--cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCC--CccHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 99888 6789999999999999999999999999999999876543211 112222 2222222 23567999
Q ss_pred EEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHHhhhhhcCCCC
Q 005179 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYL 502 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~-~l~~l~~ls~~~i~~r~~ 502 (710)
|+|||.++ .+|++|.| ||+ .|.|+.|+.++|.+||+.+++.. .+..+ .++.++..+.+|.+
T Consensus 352 IaATNrpd-----~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~------~l~~dvdl~~LA~~T~GfSG---- 416 (467)
T 4b4t_H 352 MFATNRPN-----TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM------SVERGIRWELISRLCPNSTG---- 416 (467)
T ss_dssp EEECSCTT-----SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS------CBCSSCCHHHHHHHCCSCCH----
T ss_pred EeCCCCcc-----cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC------CCCCCCCHHHHHHHCCCCCH----
Confidence 99999987 89999999 998 89999999999999999776633 22222 25677888777644
Q ss_pred cchHHHHHHHHHh
Q 005179 503 PDKAIDLVDEAGS 515 (710)
Q Consensus 503 p~~ai~ll~~a~~ 515 (710)
.+...++.+|+.
T Consensus 417 -ADI~~l~~eAa~ 428 (467)
T 4b4t_H 417 -AELRSVCTEAGM 428 (467)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 455667776653
No 15
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.1e-21 Score=213.47 Aligned_cols=201 Identities=19% Similarity=0.256 Sum_probs=154.5
Q ss_pred hcCCCCcccCHHHHHHHHHHH-------------HcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe
Q 005179 286 EELIDPVIGRETEIQRIIQIL-------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (710)
Q Consensus 286 ~~~l~~liGr~~~i~~l~~~L-------------~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l 352 (710)
.-+|+++.|.++.++.|.+.+ ..+.++++|||||||||||++|+++|.++ +..++.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~v 246 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT----------NATFLKL 246 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEEE
Confidence 347899999999888887642 12456789999999999999999999999 8899999
Q ss_pred ehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhH---HHhhcccc----cCCCeE
Q 005179 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI---SNLLKPSL----GRGELQ 425 (710)
Q Consensus 353 d~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~---~~~L~~~l----~~~~v~ 425 (710)
+.+.+. .++.|+.+..++.+|..+....|+||||||+|.++..+..+.+ .+.... .+.|+..| ....+.
T Consensus 247 ~~s~l~--~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~--~~~~~~~~~~~~lL~~ldg~~~~~~Vi 322 (434)
T 4b4t_M 247 AAPQLV--QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEK--SGDREVQRTMLELLNQLDGFSSDDRVK 322 (434)
T ss_dssp EGGGGC--SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGG--GTTHHHHHHHHHHHHHHTTSCSSCSSE
T ss_pred ehhhhh--hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCC--CCchHHHHHHHHHHHHhhccCCCCCEE
Confidence 999888 6789999999999999999999999999999999876543221 112222 22233222 346789
Q ss_pred EEEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCC
Q 005179 426 CIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502 (710)
Q Consensus 426 vI~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~ 502 (710)
||+|||.++ .+|++|.| ||+ .|.|+.|+.++|.+||+.+..+.....++ .++.++..+.+|.+
T Consensus 323 VIaaTNrp~-----~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv-----dl~~lA~~t~G~sG---- 388 (434)
T 4b4t_M 323 VLAATNRVD-----VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI-----NWQELARSTDEFNG---- 388 (434)
T ss_dssp EEEECSSCC-----CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC-----CHHHHHHHCSSCCH----
T ss_pred EEEeCCCch-----hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC-----CHHHHHHhCCCCCH----
Confidence 999999987 89999988 998 89999999999999999887754222122 25677777777644
Q ss_pred cchHHHHHHHHHh
Q 005179 503 PDKAIDLVDEAGS 515 (710)
Q Consensus 503 p~~ai~ll~~a~~ 515 (710)
.+...++.+|+.
T Consensus 389 -ADi~~l~~eA~~ 400 (434)
T 4b4t_M 389 -AQLKAVTVEAGM 400 (434)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 455566666653
No 16
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.1e-20 Score=205.45 Aligned_cols=201 Identities=18% Similarity=0.197 Sum_probs=154.6
Q ss_pred cCCCCcccCHHHHHHHHHHHH-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~-------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-+|+++.|.++.++.|.+.+. ...++++|||||||||||++|+++|..+ +.+++.++
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v~ 238 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRVN 238 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Confidence 468899999998888877542 2456789999999999999999999999 88999999
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCC-hHhHHHhhccc----ccCCCeEEEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGT-GLDISNLLKPS----LGRGELQCIA 428 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~-~~~~~~~L~~~----l~~~~v~vI~ 428 (710)
++.+. .++.|+.+..++.+|..++...|+|+||||+|.++..+..+...... ...+.+.|+.. -...++.||+
T Consensus 239 ~~~l~--~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~ 316 (428)
T 4b4t_K 239 GSEFV--HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIM 316 (428)
T ss_dssp GGGTC--CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEE
T ss_pred cchhh--ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEE
Confidence 98887 57899999999999999999999999999999998765332221111 11222333322 2356799999
Q ss_pred ccChHHHHhhhhccHHHHc--ccc-ceEec-CCCHHHHHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHHhhhhhcCCCCc
Q 005179 429 STTQDEHRTQFEKDKALAR--RFQ-PVLIS-EPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLP 503 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~~--Rf~-~I~v~-~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~-~l~~l~~ls~~~i~~r~~p 503 (710)
|||.++ .+|++|.| ||+ .|.|+ .|+.++|..||+.+..+. .+.++ .++.++..+.+|.+
T Consensus 317 aTN~~~-----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~------~l~~~~dl~~lA~~t~G~sg----- 380 (428)
T 4b4t_K 317 ATNRAD-----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM------SLAPEADLDSLIIRNDSLSG----- 380 (428)
T ss_dssp EESCSS-----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS------CBCTTCCHHHHHHHTTTCCH-----
T ss_pred ecCChh-----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC------CCCcccCHHHHHHHCCCCCH-----
Confidence 999987 89999999 997 79996 799999999999877632 33332 26778888877744
Q ss_pred chHHHHHHHHHh
Q 005179 504 DKAIDLVDEAGS 515 (710)
Q Consensus 504 ~~ai~ll~~a~~ 515 (710)
.+...++.+|+.
T Consensus 381 adi~~l~~eA~~ 392 (428)
T 4b4t_K 381 AVIAAIMQEAGL 392 (428)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455666776653
No 17
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.6e-21 Score=210.70 Aligned_cols=201 Identities=22% Similarity=0.258 Sum_probs=152.9
Q ss_pred cCCCCcccCHHHHHHHHHHHH-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~-------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-+|+++.|.++.++.|.+.+. ...++++|||||||||||++|+++|.++ +.+++.++
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v~ 247 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFSP 247 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 468999999998888776532 2456889999999999999999999999 88999999
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCCh-HhHHHhhcccc----cCCCeEEEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSL----GRGELQCIA 428 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~-~~~~~~L~~~l----~~~~v~vI~ 428 (710)
++.+. .++.|+.+..++.+|..+....|+||||||+|.++..+..+....... ....+.|+..| ..+.++||+
T Consensus 248 ~s~l~--sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ 325 (437)
T 4b4t_L 248 ASGIV--DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIM 325 (437)
T ss_dssp GGGTC--CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEE
T ss_pred hhhhc--cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEE
Confidence 99887 678999999999999999999999999999999987653322111111 11222333323 246789999
Q ss_pred ccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHhhhhhcCCCCcc
Q 005179 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRYLPD 504 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~-~~l~~l~~ls~~~i~~r~~p~ 504 (710)
|||.++ .+||+|.| ||+ .|.|+.|+.++|.+||+.++.+. ..++ ..++.++..+.+|.+ .
T Consensus 326 ATNrp~-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~------~~~~d~dl~~lA~~t~G~sG-----A 389 (437)
T 4b4t_L 326 ATNRPD-----TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV------KKTGEFDFEAAVKMSDGFNG-----A 389 (437)
T ss_dssp EESSTT-----SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS------CBCSCCCHHHHHHTCCSCCH-----H
T ss_pred ecCCch-----hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC------CCCcccCHHHHHHhCCCCCH-----H
Confidence 999987 79999998 597 89999999999999999877643 2221 126677777777644 4
Q ss_pred hHHHHHHHHHh
Q 005179 505 KAIDLVDEAGS 515 (710)
Q Consensus 505 ~ai~ll~~a~~ 515 (710)
+...++.+|+.
T Consensus 390 Di~~l~~eA~~ 400 (437)
T 4b4t_L 390 DIRNCATEAGF 400 (437)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55566666653
No 18
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.86 E-value=2.2e-21 Score=181.01 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=121.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCcHHHHHHCCCCHHHHHHHHHHHhhcC-CCCCCchhhhcCCCC
Q 005179 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHST-NNQDTDDAAAQGKPF 163 (710)
Q Consensus 85 ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~l~~~gv~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ 163 (710)
||++++++|..|+++|+++||.+|+|||||+|||.+++..++|..+|+|++.++..+...+++. |.. .
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~p~~-----------~ 70 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVL-----------P 70 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCBC-----------C
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-----------C
Confidence 8999999999999999999999999999999999877558899999999999999999998876 431 1
Q ss_pred -C-CCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHH
Q 005179 164 -S-SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAV 230 (710)
Q Consensus 164 -~-~~~~~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~ 230 (710)
+ ..+.++||+.++++|+.|+.+|+.+|+.||+++|||+||++++++.+.++|+++||+.+.++..+.
T Consensus 71 ~~~~~~~~~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 71 ASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp SSCSCCSCEECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 1 124689999999999999999999999999999999999998888889999999999999987654
No 19
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.86 E-value=1.4e-21 Score=189.47 Aligned_cols=184 Identities=58% Similarity=0.927 Sum_probs=156.3
Q ss_pred hhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEE
Q 005179 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (710)
Q Consensus 271 ~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~ 350 (710)
+.|++|+.+|.+++++..+++++|++++++.+.+.+......+++|+||||||||++++.+++.+.....|....+..++
T Consensus 3 ~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 3 QALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp CCTTTTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred hHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 45788999999999999999999999999999999988778899999999999999999999999877777776788999
Q ss_pred EeehhhhhhccccCccHHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEc
Q 005179 351 SLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429 (710)
Q Consensus 351 ~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~a 429 (710)
.+++..+..+..+.+.+...+..++..+... .+.+|||||+|.+...+.. .....++.+.|+..++++.+.+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~----~~~~~~~~~~l~~~~~~~~~~ii~~ 158 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV----AEGALDAGNILKPMLARGELRCIGA 158 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS----CTTSCCTHHHHHHHHHTTCSCEEEE
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc----cccchHHHHHHHHHHhcCCeeEEEe
Confidence 9999888776667777888888888877665 5789999999999654321 1223456778888888899999999
Q ss_pred cChHHHHhhhhccHHHHccccceEecCCC
Q 005179 430 TTQDEHRTQFEKDKALARRFQPVLISEPS 458 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~Rf~~I~v~~Ps 458 (710)
++..++.....+++++.+||..|.+++|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred cCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 99988777778899999999999999885
No 20
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.85 E-value=4.1e-21 Score=183.26 Aligned_cols=140 Identities=14% Similarity=0.107 Sum_probs=117.1
Q ss_pred CCcchhHHHhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCC
Q 005179 76 IPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDT 153 (710)
Q Consensus 76 ~~~~~~~~~ft~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~ 153 (710)
....+||++||++++++|..|+++|+++||++|+|||||+|||.++++ .++|..+|||++.+++++. .+++.+.
T Consensus 16 ~~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~~~p~--- 91 (171)
T 3zri_A 16 IELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STYSREQ--- 91 (171)
T ss_dssp CCHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHSCCCC---
T ss_pred hhHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHhcCCC---
Confidence 347789999999999999999999999999999999999999999887 7899999999999999999 8887653
Q ss_pred chhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HcCCCccCHHHHHHHhhhcCCch-HHHHHHH-hcCCHHHHHHHH
Q 005179 154 DDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSR-SRGYNFIAPEHIALGLFTVDDGS-AGRVLKR-LGVDVNHLAAVA 229 (710)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~s~~~~~vl~~A~~~a~-~~g~~~I~~ehlLlall~~~~~~-a~~iL~~-~gv~~~~l~~~~ 229 (710)
+....++||+.++++|+.|+.+|+ ++|+.||+++|||+||++++... ...+-.. ..|+.+.|++.+
T Consensus 92 ----------~~~~~~~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~~~~~~~~~~~~l~~i~~~~L~~~~ 160 (171)
T 3zri_A 92 ----------VLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHF 160 (171)
T ss_dssp ----------CCSSCCEECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTHHHHSCHHHHHHTTTSCHHHHHHTH
T ss_pred ----------CCCCCCCcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhChhhhHHHHhhHHHHcCCHHHHHHHH
Confidence 223568999999999999999999 99999999999999999765210 1111111 346777776544
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.83 E-value=1.4e-19 Score=194.62 Aligned_cols=211 Identities=20% Similarity=0.258 Sum_probs=152.9
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHH------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCcccc
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL 345 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~ 345 (710)
..+.....+..|++++|.+..++.|.+.+. .....++||+||||||||++|+++|..+
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---------- 108 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---------- 108 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH----------
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------
Confidence 344445566789999999999888887652 1234679999999999999999999998
Q ss_pred CceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-----
Q 005179 346 SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----- 420 (710)
Q Consensus 346 ~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----- 420 (710)
+..++.+++..+. ..+.|+.+..++.++..+....++||||||+|.+......+. ......+.+.|...+.
T Consensus 109 ~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~--~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 109 NSTFFSVSSSDLV--SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp TCEEEEEEHHHHH--SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC--
T ss_pred CCCEEEeeHHHHh--hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc--chHHHHHHHHHHHHhhccccc
Confidence 7788899988876 345677788889999988888899999999999975432211 1222334444444332
Q ss_pred CCCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcC
Q 005179 421 RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (710)
Q Consensus 421 ~~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~ 499 (710)
...+++|++||.++ .+++++.+||+ .+.++.|+.++|..||+.++. ..+..+++..++.++..+.+|.+
T Consensus 185 ~~~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----~~~~~~~~~~l~~la~~t~G~sg- 254 (355)
T 2qp9_X 185 SQGVLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG----DTPSVLTKEDYRTLGAMTEGYSG- 254 (355)
T ss_dssp -CCEEEEEEESCGG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT----TSCBCCCHHHHHHHHHHTTTCCH-
T ss_pred CCCeEEEeecCCcc-----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHcCCCCH-
Confidence 45789999999876 78999999996 899999999999999997765 33556789999999999887643
Q ss_pred CCCcchHHHHHHHHHhh
Q 005179 500 RYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 500 r~~p~~ai~ll~~a~~~ 516 (710)
.+...++++|+..
T Consensus 255 ----~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 255 ----SDIAVVVKDALMQ 267 (355)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHH
Confidence 4556677776644
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=197.75 Aligned_cols=198 Identities=21% Similarity=0.336 Sum_probs=147.2
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHH------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCcccc
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL 345 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~ 345 (710)
..|....++..|++++|++..++.+.+.+. .....++||+||||||||++|++++..+
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---------- 172 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---------- 172 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT----------
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh----------
Confidence 355556677789999999999999888762 2335789999999999999999999987
Q ss_pred CceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-----
Q 005179 346 SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----- 420 (710)
Q Consensus 346 ~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----- 420 (710)
+..++.+++..+. ..+.|..+..+..++..+....++||||||||.++.....+. ......+.+.|...+.
T Consensus 173 ~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 173 NATFFNISAASLT--SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE--HDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp TCEEEEECSCCC---------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC--
T ss_pred cCcEEEeeHHHhh--ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCcc--chHHHHHHHHHHHHhhccccc
Confidence 7788898887766 345667778888999988888889999999999976533211 1223344444443333
Q ss_pred -CCCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q 005179 421 -RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (710)
Q Consensus 421 -~~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~ 498 (710)
...++||++||..+ .+++++.+||. .|.++.|+.+++..||+.++. .++..++++.+..++..+.+|..
T Consensus 249 ~~~~v~vI~atn~~~-----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~----~~~~~l~~~~~~~la~~~~g~~~ 319 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLC----KQGSPLTQKELAQLARMTDGYSG 319 (389)
T ss_dssp ---CEEEEEEESCGG-----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT----TSCCCSCHHHHHHHHHHTTTCCH
T ss_pred CCCCEEEEEecCCch-----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHcCCCCH
Confidence 45689999999865 78999999997 799999999999999987766 45778999999999988877643
No 23
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.83 E-value=8.1e-20 Score=194.14 Aligned_cols=202 Identities=21% Similarity=0.285 Sum_probs=155.8
Q ss_pred hhcCCCCcccCHHHHHHHHHHHH------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe
Q 005179 285 SEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (710)
Q Consensus 285 ~~~~l~~liGr~~~i~~l~~~L~------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l 352 (710)
.+-+|++++|.++.++.+.+.+. .....++||+||||||||++|+++++.+ +..++.+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~v 82 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSV 82 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH----------CCCEEEE
Confidence 34467889999999998888662 1234679999999999999999999988 7789999
Q ss_pred ehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc-----cCCCeEEE
Q 005179 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-----GRGELQCI 427 (710)
Q Consensus 353 d~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l-----~~~~v~vI 427 (710)
+++.+. .++.|+.+..++.++..+....++||||||+|.+......+. ......+.+.|...+ ....+++|
T Consensus 83 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~vi 158 (322)
T 3eie_A 83 SSSDLV--SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGVGNDSQGVLVL 158 (322)
T ss_dssp EHHHHH--TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEE
T ss_pred chHHHh--hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc--chHHHHHHHHHHHHhccccccCCceEEE
Confidence 988877 456788999999999999988899999999999976532211 122333444443333 34678999
Q ss_pred EccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchH
Q 005179 428 ASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (710)
Q Consensus 428 ~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~a 506 (710)
++||... .+++++.+||. .|.++.|+.++|.+||+.++. ..+..+++..++.++..+.+|.+ .+.
T Consensus 159 ~atn~~~-----~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~----~~~~~~~~~~l~~la~~t~g~sg-----~di 224 (322)
T 3eie_A 159 GATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG----DTPCVLTKEDYRTLGAMTEGYSG-----SDI 224 (322)
T ss_dssp EEESCGG-----GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT----TCCCCCCHHHHHHHHHTTTTCCH-----HHH
T ss_pred EecCChh-----hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc----cCCCCCCHHHHHHHHHHcCCCCH-----HHH
Confidence 9999876 68999999997 799999999999999998765 44667889999999988877644 455
Q ss_pred HHHHHHHH
Q 005179 507 IDLVDEAG 514 (710)
Q Consensus 507 i~ll~~a~ 514 (710)
..++..|.
T Consensus 225 ~~l~~~a~ 232 (322)
T 3eie_A 225 AVVVKDAL 232 (322)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 55666654
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.83 E-value=3.6e-19 Score=191.79 Aligned_cols=216 Identities=22% Similarity=0.324 Sum_probs=163.8
Q ss_pred hhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHH------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 271 ~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~ 338 (710)
..++.....+.....+..|++++|++..++.+.+.+. .....++||+||||||||++|++++..+
T Consensus 65 ~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--- 141 (357)
T 3d8b_A 65 KMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--- 141 (357)
T ss_dssp HHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---
T ss_pred HHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---
Confidence 4455556666666677889999999999999888763 2356789999999999999999999987
Q ss_pred CCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccc
Q 005179 339 EVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (710)
Q Consensus 339 ~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~ 418 (710)
+..++.++++.+. ..+.|+.+..++.++..+....+.||||||+|.+......+. ......+.+.|...
T Consensus 142 -------~~~~~~i~~~~l~--~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~~ 210 (357)
T 3d8b_A 142 -------GATFFSISASSLT--SKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE--HESSRRIKTEFLVQ 210 (357)
T ss_dssp -------TCEEEEEEGGGGC--CSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHH
T ss_pred -------CCeEEEEehHHhh--ccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc--chHHHHHHHHHHHH
Confidence 7788899888776 456778888889999888888889999999999976532211 11223344444333
Q ss_pred cc------CCCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005179 419 LG------RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (710)
Q Consensus 419 l~------~~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ 491 (710)
+. ...+++|++||... .+++++.+||. .+.++.|+.+++..|++.++. ..++.++++.++.++.
T Consensus 211 l~~~~~~~~~~v~vI~atn~~~-----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~----~~~~~l~~~~l~~la~ 281 (357)
T 3d8b_A 211 LDGATTSSEDRILVVGATNRPQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMS----KEQCCLSEEEIEQIVQ 281 (357)
T ss_dssp HHC----CCCCEEEEEEESCGG-----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH----TSCBCCCHHHHHHHHH
T ss_pred HhcccccCCCCEEEEEecCChh-----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh----hcCCCccHHHHHHHHH
Confidence 32 35789999998875 68999999997 789999999999999998776 3466789999999999
Q ss_pred HhhhhhcCCCCcchHHHHHHHHH
Q 005179 492 LSARYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 492 ls~~~i~~r~~p~~ai~ll~~a~ 514 (710)
.+.+|.+ .+...+++.|.
T Consensus 282 ~t~G~s~-----~dl~~l~~~a~ 299 (357)
T 3d8b_A 282 QSDAFSG-----ADMTQLCREAS 299 (357)
T ss_dssp HTTTCCH-----HHHHHHHHHHH
T ss_pred HcCCCCH-----HHHHHHHHHHH
Confidence 8877643 44445555554
No 25
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.81 E-value=4.1e-19 Score=188.48 Aligned_cols=202 Identities=20% Similarity=0.228 Sum_probs=153.1
Q ss_pred cCCCCcccCHHHHHHHHHHHH------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 287 ELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
-+|++++|.++.++.|.+.+. ...+.++||+||||||||++|+++|+.+ .+..++.+++
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---------~~~~~~~i~~ 79 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSISS 79 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---------TSCEEEEEEC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---------CCCcEEEEEh
Confidence 467899999998888887653 1234679999999999999999999987 1456777777
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc-----cCCCeEEEEc
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-----GRGELQCIAS 429 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l-----~~~~v~vI~a 429 (710)
..+. .++.|+.+..++.++..+....++||||||+|.+......+. ......+.+.|...+ ....+++|++
T Consensus 80 ~~l~--~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~v~vI~a 155 (322)
T 1xwi_A 80 SDLV--SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGVDNDGILVLGA 155 (322)
T ss_dssp CSSC--CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC--TTHHHHHHHHHHHHHHCSSSCCTTEEEEEE
T ss_pred HHHH--hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc--chHHHHHHHHHHHHHhcccccCCCEEEEEe
Confidence 7665 456777888899999999888899999999999976543311 122223333333332 2467899999
Q ss_pred cChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHH
Q 005179 430 TTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ 508 (710)
||.+. .+++++.|||+ .+.++.|+.++|..||+.++. ..+..+++..++.++..+.+|.+ .+...
T Consensus 156 tn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----~~~~~l~~~~l~~la~~t~G~sg-----adl~~ 221 (322)
T 1xwi_A 156 TNIPW-----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLG----TTQNSLTEADFRELGRKTDGYSG-----ADISI 221 (322)
T ss_dssp ESCTT-----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT----TCCBCCCHHHHHHHHHTCTTCCH-----HHHHH
T ss_pred cCCcc-----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHcCCCCH-----HHHHH
Confidence 99875 78999999996 899999999999999998765 33556789999999988877744 44555
Q ss_pred HHHHHHh
Q 005179 509 LVDEAGS 515 (710)
Q Consensus 509 ll~~a~~ 515 (710)
++++|+.
T Consensus 222 l~~~A~~ 228 (322)
T 1xwi_A 222 IVRDALM 228 (322)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6666653
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.80 E-value=2.3e-18 Score=180.57 Aligned_cols=208 Identities=20% Similarity=0.318 Sum_probs=152.4
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccC
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS 346 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~ 346 (710)
.+.....+..|++++|+++.++.+.+.+.. ....+++|+||||||||++|++++..+ +
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~----------~ 79 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC----------S 79 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT----------T
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh----------C
Confidence 344444566789999999999988876532 235789999999999999999999987 6
Q ss_pred ceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc------
Q 005179 347 KRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG------ 420 (710)
Q Consensus 347 ~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~------ 420 (710)
..++.++++.+. ..+.|..+..++.++..+....+.||||||+|.+........ ......+.+.|...+.
T Consensus 80 ~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 80 ATFLNISAASLT--SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp CEEEEEESTTTS--SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC---
T ss_pred CCeEEeeHHHHh--hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccC
Confidence 778888877765 345677788888889888888899999999999976533211 1112233333332222
Q ss_pred -CCCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q 005179 421 -RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (710)
Q Consensus 421 -~~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~ 498 (710)
...+++|++|+.++ .+++++.+||. .+.++.|+.+++..|++.++. ..+..++++.++.++..+.+|..
T Consensus 156 ~~~~v~vi~~tn~~~-----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~----~~~~~~~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQ----KQGSPLDTEALRRLAKITDGYSG 226 (297)
T ss_dssp ---CEEEEEEESCGG-----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHG----GGSCCSCHHHHHHHHHHTTTCCH
T ss_pred CCCcEEEEeecCChh-----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHcCCCCH
Confidence 24688999999875 68999999996 899999999999999987765 34667899999999888776533
Q ss_pred CCCCcchHHHHHHHHH
Q 005179 499 DRYLPDKAIDLVDEAG 514 (710)
Q Consensus 499 ~r~~p~~ai~ll~~a~ 514 (710)
.....+++.|+
T Consensus 227 -----~~l~~l~~~a~ 237 (297)
T 3b9p_A 227 -----SDLTALAKDAA 237 (297)
T ss_dssp -----HHHHHHHHHHT
T ss_pred -----HHHHHHHHHHH
Confidence 23345555554
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.78 E-value=5.3e-18 Score=176.70 Aligned_cols=200 Identities=22% Similarity=0.308 Sum_probs=146.2
Q ss_pred cCCCCcccCHHHHHHHHHHHHc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~-------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-.|++++|.++.++.+.+.+.. ..+.++||+||||||||++|++++..+ +..++.++
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~v~ 83 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET----------NATFIRVV 83 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEEEE
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 3567899999999888876543 456789999999999999999999988 77888888
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc-------cCCCeEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGELQC 426 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l-------~~~~v~v 426 (710)
+..+. ..+.|..+..+..++..+....+.||||||+|.+......... .........|..++ ..+.+++
T Consensus 84 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~~~~~~~v 159 (285)
T 3h4m_A 84 GSELV--KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT--GGDREVQRTLMQLLAEMDGFDARGDVKI 159 (285)
T ss_dssp GGGGC--CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCC--GGGGHHHHHHHHHHHHHHTTCSSSSEEE
T ss_pred hHHHH--HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccC--CccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 87776 4467788888999999988888899999999999765432111 12223333333222 2467899
Q ss_pred EEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 005179 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p 503 (710)
|++|+..+ .+++++.+ ||. .+.++.|+.+++.+|++.....+ ++. .+..+..++..+.+| .+
T Consensus 160 I~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~----~~~-~~~~~~~l~~~~~g~-----~~ 224 (285)
T 3h4m_A 160 IGATNRPD-----ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM----NLA-EDVNLEEIAKMTEGC-----VG 224 (285)
T ss_dssp EEECSCGG-----GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS----CBC-TTCCHHHHHHHCTTC-----CH
T ss_pred EEeCCCch-----hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC----CCC-CcCCHHHHHHHcCCC-----CH
Confidence 99999875 68999999 997 89999999999999998765532 221 122356666666655 33
Q ss_pred chHHHHHHHHHh
Q 005179 504 DKAIDLVDEAGS 515 (710)
Q Consensus 504 ~~ai~ll~~a~~ 515 (710)
.+...+++.|..
T Consensus 225 ~~i~~l~~~a~~ 236 (285)
T 3h4m_A 225 AELKAICTEAGM 236 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455556666653
No 28
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.78 E-value=6.8e-17 Score=191.03 Aligned_cols=177 Identities=18% Similarity=0.264 Sum_probs=126.1
Q ss_pred CCcccCHHHHHHHHHHHHcCC-------C--CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhc
Q 005179 290 DPVIGRETEIQRIIQILCRRT-------K--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~~~-------~--~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g 360 (710)
+.++|++..++.+...+.+.. + .++||+||||||||++|+++++.+... +..++.++++.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-------~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD-------EESMIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC-------TTCEEEEEGGGGCSS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CcceEEEechhcccc
Confidence 358999999988888776422 1 259999999999999999999988432 567888999887643
Q ss_pred cccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------CeEEE
Q 005179 361 AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCI 427 (710)
Q Consensus 361 ~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI 427 (710)
.... -..+...+....+.|||||||+.+ ..++++.|.+.++.+ ++++|
T Consensus 564 ~~~~------~~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 624 (758)
T 3pxi_A 564 HSTS------GGQLTEKVRRKPYSVVLLDAIEKA-------------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILI 624 (758)
T ss_dssp CCCC---------CHHHHHHCSSSEEEEECGGGS-------------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEE
T ss_pred cccc------cchhhHHHHhCCCeEEEEeCcccc-------------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEE
Confidence 2221 111223344456789999999988 556788888777653 45788
Q ss_pred EccChH-----HHHh--hhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHH
Q 005179 428 ASTTQD-----EHRT--QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAH-----HNCKFTLEAINAAVHL 492 (710)
Q Consensus 428 ~att~~-----~~~~--~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~-----~~~~i~~~~l~~l~~l 492 (710)
+|||.. .... .-.+.|.|.+||+ .|.|++|+.+++..|++..+..+... ..+.+++++++.++..
T Consensus 625 ~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~ 702 (758)
T 3pxi_A 625 MTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEE 702 (758)
T ss_dssp EEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGG
T ss_pred EeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHh
Confidence 888831 1111 1126799999995 89999999999999999887765432 2467899999888765
No 29
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.77 E-value=3.8e-18 Score=190.17 Aligned_cols=204 Identities=22% Similarity=0.265 Sum_probs=152.7
Q ss_pred hhhcCCCCcccCHHHHHHHHHHHHc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEE
Q 005179 284 ASEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (710)
Q Consensus 284 ~~~~~l~~liGr~~~i~~l~~~L~~-------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~ 350 (710)
..+..|++++|.+..++++.+.+.. ..+.++||+||||||||++|++++..+ +..++
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv 267 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFF 267 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------SSEEE
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------CCCEE
Confidence 3455788999999999998876542 456789999999999999999999987 77899
Q ss_pred EeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc----CCCeEE
Q 005179 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQC 426 (710)
Q Consensus 351 ~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~v 426 (710)
.+++..+. ..+.|+.+..++.+|..+....+++|||||||.+........ .+....+++.|...++ ..++++
T Consensus 268 ~vn~~~l~--~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~--~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 268 LINGPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp EEEHHHHH--TSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC--CHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred EEEchHhh--hhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc--chHHHHHHHHHHHHhhccccCCceEE
Confidence 99998887 456788888899999999888899999999999976543211 1223345555555543 567999
Q ss_pred EEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 005179 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p 503 (710)
|++||.++ .+++++.+ ||. .|.++.|+.++|.+||+.+...+ .+. .+..+..++..+.+|..
T Consensus 344 IaaTn~~~-----~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~----~l~-~~~~l~~la~~t~g~s~----- 408 (489)
T 3hu3_A 344 MAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM----KLA-DDVDLEQVANETHGHVG----- 408 (489)
T ss_dssp EEEESCGG-----GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS----CBC-TTCCHHHHHHTCTTCCH-----
T ss_pred EEecCCcc-----ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC----CCc-chhhHHHHHHHccCCcH-----
Confidence 99999876 68899999 887 79999999999999998765532 111 12234566666555533
Q ss_pred chHHHHHHHHHhh
Q 005179 504 DKAIDLVDEAGSR 516 (710)
Q Consensus 504 ~~ai~ll~~a~~~ 516 (710)
.+...+++.|+..
T Consensus 409 ~dL~~L~~~A~~~ 421 (489)
T 3hu3_A 409 ADLAALCSEAALQ 421 (489)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555566666543
No 30
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.77 E-value=3.1e-18 Score=189.62 Aligned_cols=206 Identities=19% Similarity=0.224 Sum_probs=149.7
Q ss_pred hhhhcCCCCcccCHHHHHHHHHHHH------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEE
Q 005179 283 RASEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (710)
Q Consensus 283 ~~~~~~l~~liGr~~~i~~l~~~L~------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~ 350 (710)
...+-.|++++|.+...+.+.+.+. .....++||+||||||||++|+++|..+ .+..++
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---------~~~~~~ 197 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFF 197 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---------CSSEEE
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---------CCCCEE
Confidence 3445678999999999988887662 2345789999999999999999999987 145677
Q ss_pred EeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-----CCCeE
Q 005179 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQ 425 (710)
Q Consensus 351 ~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-----~~~v~ 425 (710)
.++++.+.. .+.|+.+..++.++..+....++||||||+|.+......+. ......+.+.|...+. ...++
T Consensus 198 ~v~~~~l~~--~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 198 SISSSDLVS--KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp EECCC-----------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC--CGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred EEeHHHHHh--hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc--ccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 777776652 34455555678888888888899999999999976543211 1223345555544443 46789
Q ss_pred EEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcc
Q 005179 426 CIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (710)
Q Consensus 426 vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~ 504 (710)
||++||.+. .+++++.|||+ .+.++.|+.+++..||+.++. ..+..+++..++.++..+.+|.+ .
T Consensus 274 vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~----~~~~~l~~~~l~~la~~t~G~sg-----a 339 (444)
T 2zan_A 274 VLGATNIPW-----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLG----STQNSLTEADFQELGRKTDGYSG-----A 339 (444)
T ss_dssp EEEEESCGG-----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT----TSCEECCHHHHHHHHHHTTTCCH-----H
T ss_pred EEecCCCcc-----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHcCCCCH-----H
Confidence 999999875 78999999997 899999999999999987765 33556789999999999887744 4
Q ss_pred hHHHHHHHHHh
Q 005179 505 KAIDLVDEAGS 515 (710)
Q Consensus 505 ~ai~ll~~a~~ 515 (710)
+...+++.|+.
T Consensus 340 dl~~l~~~a~~ 350 (444)
T 2zan_A 340 DISIIVRDALM 350 (444)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55566666653
No 31
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.76 E-value=9.9e-18 Score=176.24 Aligned_cols=203 Identities=18% Similarity=0.261 Sum_probs=141.2
Q ss_pred cCCCCcccCHHHHHHHHHHHHc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~-------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-+|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|++++..+ +..++.++
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i~v~ 81 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 81 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEEEEC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEEEEE
Confidence 4567899999988888776542 345679999999999999999999987 67788888
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC-CCCChHhHHHhhcccc----cCCCeEEEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSL----GRGELQCIA 428 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~-~~~~~~~~~~~L~~~l----~~~~v~vI~ 428 (710)
+..+.. .+.|+.+..+..+|..+....++||||||+|.+........+ ..+....+.+.|...+ ...++++|+
T Consensus 82 ~~~l~~--~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~ 159 (301)
T 3cf0_A 82 GPELLT--MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 159 (301)
T ss_dssp HHHHHH--HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEE
T ss_pred hHHHHh--hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEE
Confidence 877753 234444566788888888888999999999999754221100 0011222333333333 346799999
Q ss_pred ccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcch
Q 005179 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ 505 (710)
+||.++ .+++++.+ ||. .|.++.|+.++|.+||+.++..... ...++ ++.++..+.+|. +.+
T Consensus 160 atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~--~~~~~---~~~la~~~~g~s-----g~d 224 (301)
T 3cf0_A 160 ATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV--AKDVD---LEFLAKMTNGFS-----GAD 224 (301)
T ss_dssp EESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CSSCC---HHHHHHTCSSCC-----HHH
T ss_pred ecCCcc-----ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC--Cccch---HHHHHHHcCCCC-----HHH
Confidence 999876 68899998 997 8999999999999999877654311 11222 345555554442 345
Q ss_pred HHHHHHHHHhh
Q 005179 506 AIDLVDEAGSR 516 (710)
Q Consensus 506 ai~ll~~a~~~ 516 (710)
...+++.|+..
T Consensus 225 l~~l~~~a~~~ 235 (301)
T 3cf0_A 225 LTEICQRACKL 235 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56667766643
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=1.6e-17 Score=174.98 Aligned_cols=209 Identities=18% Similarity=0.215 Sum_probs=154.6
Q ss_pred CcccCHHHHHHHHHHHH---------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh
Q 005179 291 PVIGRETEIQRIIQILC---------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~---------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~ 355 (710)
+++|+++.++.+.+.+. .....++||+||||||||++|+++++.+.... ......++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHH
Confidence 59999998888876643 23445799999999999999999999985532 1224467888877
Q ss_pred hhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChH
Q 005179 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (710)
Q Consensus 356 ~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~ 433 (710)
.+. ..+.|.....+..++..+ .+.||||||+|.+...... .....++++.|...++. .++++|++++..
T Consensus 109 ~l~--~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 109 DLV--GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp GTC--CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred Hhh--hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 775 345666777777777655 3679999999999754321 12355677777777764 478999999988
Q ss_pred HHHhhhhccHHHHccc-cceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCC--cchHHHHH
Q 005179 434 EHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL--PDKAIDLV 510 (710)
Q Consensus 434 ~~~~~~~~d~aL~~Rf-~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~--p~~ai~ll 510 (710)
.+..++.++|+|.+|| ..|.|++|+.+++..|++.++.. .++.+++++++.++.+..+....... ...+..++
T Consensus 180 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l 255 (309)
T 3syl_A 180 RMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD----QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNAL 255 (309)
T ss_dssp HHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 7777777899999999 59999999999999999988774 46889999999998887654332221 23455566
Q ss_pred HHHHh
Q 005179 511 DEAGS 515 (710)
Q Consensus 511 ~~a~~ 515 (710)
+.++.
T Consensus 256 ~~a~~ 260 (309)
T 3syl_A 256 DRARL 260 (309)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 33
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.76 E-value=3.5e-18 Score=188.70 Aligned_cols=200 Identities=24% Similarity=0.308 Sum_probs=152.4
Q ss_pred hhhHHhhhhcCCCCcccCHHHH---HHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 278 VDLTARASEELIDPVIGRETEI---QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i---~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
.+|.+++|+.+|++++|+++.+ ..+...+......++||+||||||||++|+.|++.+ +..++.++.
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a 83 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISA 83 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEET
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEe
Confidence 4788899999999999999998 778888888777889999999999999999999988 556666653
Q ss_pred hhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEcc
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~at 430 (710)
... + ..+ ++.++..+. ...+.||||||+|.+ ....++.|++.++++.+++|++|
T Consensus 84 ~~~--~---~~~----ir~~~~~a~~~~~~~~~~iLfIDEI~~l-------------~~~~q~~LL~~le~~~v~lI~at 141 (447)
T 3pvs_A 84 VTS--G---VKE----IREAIERARQNRNAGRRTILFVDEVHRF-------------NKSQQDAFLPHIEDGTITFIGAT 141 (447)
T ss_dssp TTC--C---HHH----HHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHTTSCEEEEEE
T ss_pred ccC--C---HHH----HHHHHHHHHHhhhcCCCcEEEEeChhhh-------------CHHHHHHHHHHHhcCceEEEecC
Confidence 221 1 112 333443332 346789999999999 22346778888899999999998
Q ss_pred ChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHhhhhhcCCCCcchHH
Q 005179 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH---HNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (710)
Q Consensus 431 t~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~---~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai 507 (710)
+.+. .+.++++|.+||..+.+.+|+.+++..+++..+..+... .++.+++++++.++..+.+. ...++
T Consensus 142 t~n~---~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd------~R~ll 212 (447)
T 3pvs_A 142 TENP---SFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGD------ARRAL 212 (447)
T ss_dssp SSCG---GGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSC------HHHHH
T ss_pred CCCc---ccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCC------HHHHH
Confidence 7654 357889999999999999999999999999887754322 45779999999999886543 35677
Q ss_pred HHHHHHHhhhh
Q 005179 508 DLVDEAGSRAH 518 (710)
Q Consensus 508 ~ll~~a~~~~~ 518 (710)
.+++.++..+.
T Consensus 213 n~Le~a~~~a~ 223 (447)
T 3pvs_A 213 NTLEMMADMAE 223 (447)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHhcc
Confidence 78887775543
No 34
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.74 E-value=9.1e-19 Score=203.63 Aligned_cols=201 Identities=18% Similarity=0.270 Sum_probs=132.4
Q ss_pred CCCCcccCHHHHHHHHHHHH-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 288 LIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~-------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
+++++.|.++..+.|.+.+. ...+.++|||||||||||++|+++|.++ +..++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~~ 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKG 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECCH
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh----------CCceEEecc
Confidence 56788898888887776542 1345679999999999999999999998 888999999
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC-CCChHhHHHhhccccc----CCCeEEEEc
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RGELQCIAS 429 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l~----~~~v~vI~a 429 (710)
+.++ .++.|+.+..++.+|+.++...|+||||||+|.++..+..+.++ .+....+.+.|+..|. ...+.||++
T Consensus 545 ~~l~--s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~a 622 (806)
T 3cf2_A 545 PELL--TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGA 622 (806)
T ss_dssp HHHH--TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC
T ss_pred chhh--ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEe
Confidence 9988 67889999999999999999999999999999998764322111 1112234444444333 467899999
Q ss_pred cChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHhhhhhcCCCCcch
Q 005179 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYISDRYLPDK 505 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~-~~~l~~l~~ls~~~i~~r~~p~~ 505 (710)
||.++ .+|+++.| ||+ .|+|+.|+.++|.+||+.++++. .+. +-.++.+++.+.+|.+ .+
T Consensus 623 TN~p~-----~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~------~~~~~~dl~~la~~t~g~SG-----ad 686 (806)
T 3cf2_A 623 TNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS------PVAKDVDLEFLAKMTNGFSG-----AD 686 (806)
T ss_dssp -CCSS-----SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--------CCC---------------------C
T ss_pred CCCch-----hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC------CCCCCCCHHHHHHhCCCCCH-----HH
Confidence 99986 79999999 998 89999999999999998765432 222 2236778888887754 44
Q ss_pred HHHHHHHHHhh
Q 005179 506 AIDLVDEAGSR 516 (710)
Q Consensus 506 ai~ll~~a~~~ 516 (710)
...++.+|+..
T Consensus 687 i~~l~~~A~~~ 697 (806)
T 3cf2_A 687 LTEICQRACKL 697 (806)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56677776643
No 35
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.74 E-value=4.5e-17 Score=167.25 Aligned_cols=204 Identities=20% Similarity=0.250 Sum_probs=136.6
Q ss_pred CCCCcccCHHHHHHHHHHHHc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh
Q 005179 288 LIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~ 355 (710)
.|++++|.++.++.+.+++.. ..++++||+||||||||++|+++++.+ +.+++.+++.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~~~ 73 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMAGA 73 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEETT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEechH
Confidence 578999999888777665421 345679999999999999999999988 6678888887
Q ss_pred hhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC---CCCChHhHHHhhcc---cccCCCeEEEEc
Q 005179 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG---NKGTGLDISNLLKP---SLGRGELQCIAS 429 (710)
Q Consensus 356 ~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~---~~~~~~~~~~~L~~---~l~~~~v~vI~a 429 (710)
.+. ..+.+.....+..++..+....+.||||||+|.+......... +......+..+|.. .-....+++|++
T Consensus 74 ~~~--~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~ 151 (262)
T 2qz4_A 74 EFV--EVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLAS 151 (262)
T ss_dssp TTS--SSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEE
T ss_pred HHH--hhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEec
Confidence 765 3456667777888998888778899999999999654321000 00111112222221 112357889999
Q ss_pred cChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHhhhhhcCCCCcch
Q 005179 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPDK 505 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~-l~~l~~ls~~~i~~r~~p~~ 505 (710)
||..+ .+++++.+ ||. .+.++.|+.+++.+|++.++... ++....+. ...++..+.+| .+.+
T Consensus 152 tn~~~-----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~~~l~~~~~g~-----~~~~ 217 (262)
T 2qz4_A 152 TNRAD-----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL----KLTQSSTFYSQRLAELTPGF-----SGAD 217 (262)
T ss_dssp ESCGG-----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT----TCCBTHHHHHHHHHHTCTTC-----CHHH
T ss_pred CCChh-----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC----CCCcchhhHHHHHHHHCCCC-----CHHH
Confidence 98875 67899999 996 89999999999999999887643 45555553 45566555444 2345
Q ss_pred HHHHHHHHHhhh
Q 005179 506 AIDLVDEAGSRA 517 (710)
Q Consensus 506 ai~ll~~a~~~~ 517 (710)
...+++.|+..+
T Consensus 218 l~~l~~~a~~~a 229 (262)
T 2qz4_A 218 IANICNEAALHA 229 (262)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHHH
Confidence 566777766443
No 36
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=2.6e-17 Score=168.94 Aligned_cols=204 Identities=19% Similarity=0.277 Sum_probs=137.0
Q ss_pred hhhcCCCCcccCHHHHHHHHHHHHc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEE
Q 005179 284 ASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (710)
Q Consensus 284 ~~~~~l~~liGr~~~i~~l~~~L~~------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ 351 (710)
..+..|++++|.++.++.+.+++.. ..+.+++|+||||||||+++++++..+ +.+++.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~ 75 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFT 75 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEE
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCCEEE
Confidence 3455788999999888776654321 235679999999999999999999987 456677
Q ss_pred eehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC-CCChHhHHHhhcccc----cCCCeEE
Q 005179 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSL----GRGELQC 426 (710)
Q Consensus 352 ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l----~~~~v~v 426 (710)
+++..+. ..+.|..+..+..+++.+....++++||||+|.+........+. ........+.+...+ ....+++
T Consensus 76 i~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 153 (257)
T 1lv7_A 76 ISGSDFV--EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 153 (257)
T ss_dssp ECSCSST--TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEE
T ss_pred EeHHHHH--HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEE
Confidence 7766654 23445566778888988887778999999999997643321110 011112233332222 3567899
Q ss_pred EEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHhhhhhcCCCC
Q 005179 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYL 502 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~-l~~l~~ls~~~i~~r~~ 502 (710)
|++|+.++ .+++++.+ ||. .+.++.|+.++|.+|++.+..+ ..+.+++ +..++..+.+| .
T Consensus 154 I~~tn~~~-----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~------~~l~~~~~~~~la~~~~G~-----~ 217 (257)
T 1lv7_A 154 IAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR------VPLAPDIDAAIIARGTPGF-----S 217 (257)
T ss_dssp EEEESCTT-----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT------SCBCTTCCHHHHHHTCTTC-----C
T ss_pred EEeeCCch-----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc------CCCCccccHHHHHHHcCCC-----C
Confidence 99999875 68899988 997 7999999999999999876543 2333332 34444443332 3
Q ss_pred cchHHHHHHHHHh
Q 005179 503 PDKAIDLVDEAGS 515 (710)
Q Consensus 503 p~~ai~ll~~a~~ 515 (710)
+.+...++..|..
T Consensus 218 ~~dl~~l~~~a~~ 230 (257)
T 1lv7_A 218 GADLANLVNEAAL 230 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455566666653
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.73 E-value=1.2e-16 Score=170.68 Aligned_cols=192 Identities=21% Similarity=0.284 Sum_probs=137.6
Q ss_pred hhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHc-----CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEE
Q 005179 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (710)
Q Consensus 276 ~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~-----~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~ 350 (710)
-..+|.+++++..|++++|++..++.+...+.. ....++||+||||||||++|+++++.+ +..++
T Consensus 15 ~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~~~ 84 (338)
T 3pfi_A 15 FDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SANIK 84 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCCEE
T ss_pred hhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeE
Confidence 334677888999999999999999988887754 345689999999999999999999887 56677
Q ss_pred EeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--------
Q 005179 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (710)
Q Consensus 351 ~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------- 422 (710)
.+++..+. ..+. +...+.. ...+.+|||||+|.+ ..+.++.|...++++
T Consensus 85 ~~~~~~~~----~~~~----~~~~~~~--~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~l~~~~~~~~~~~ 141 (338)
T 3pfi_A 85 TTAAPMIE----KSGD----LAAILTN--LSEGDILFIDEIHRL-------------SPAIEEVLYPAMEDYRLDIIIGS 141 (338)
T ss_dssp EEEGGGCC----SHHH----HHHHHHT--CCTTCEEEEETGGGC-------------CHHHHHHHHHHHHTSCC------
T ss_pred Eecchhcc----chhH----HHHHHHh--ccCCCEEEEechhhc-------------CHHHHHHHHHHHHhccchhhccc
Confidence 77665432 1112 2233322 245789999999998 344556665555543
Q ss_pred ------------CeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 005179 423 ------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489 (710)
Q Consensus 423 ------------~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l 489 (710)
.+++|++|+... .++++|.+||. .+.+++|+.+++..+++..... .++.+++++++.+
T Consensus 142 ~~~~~~~~~~~~~~~~i~atn~~~-----~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~l 212 (338)
T 3pfi_A 142 GPAAQTIKIDLPKFTLIGATTRAG-----MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK----LNKTCEEKAALEI 212 (338)
T ss_dssp ---CCCCCCCCCCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCEECHHHHHHH
T ss_pred CccccceecCCCCeEEEEeCCCcc-----ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHH
Confidence 278999999865 58899999994 8999999999999999877663 4678999999988
Q ss_pred HHHhhhhhcCCCCcchHHHHHHHHHh
Q 005179 490 VHLSARYISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 490 ~~ls~~~i~~r~~p~~ai~ll~~a~~ 515 (710)
+..+.++ +..+..+++.+..
T Consensus 213 ~~~~~G~------~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 213 AKRSRST------PRIALRLLKRVRD 232 (338)
T ss_dssp HHTTTTC------HHHHHHHHHHHHH
T ss_pred HHHHCcC------HHHHHHHHHHHHH
Confidence 8765543 4456666666543
No 38
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.72 E-value=3.2e-16 Score=185.52 Aligned_cols=181 Identities=16% Similarity=0.217 Sum_probs=128.6
Q ss_pred CCcccCHHHHHHHHHHHHcC---------CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhc
Q 005179 290 DPVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~~---------~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g 360 (710)
..++|+++.++.+...+... ...++||+||||||||++|+++++.+ +..++.++++.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l----------~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMER 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH----------TCEEEEEEGGGCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh----------cCCEEEEechhhcch
Confidence 45899999998888776532 12368999999999999999999988 567888888776431
Q ss_pred c---c----cCccHHH-HHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC----------
Q 005179 361 A---K----ERGELEA-RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------- 422 (710)
Q Consensus 361 ~---~----~~g~~e~-~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~---------- 422 (710)
. . ..|.... .-..+...+....+.||||||++.+ ..++++.|++.++.+
T Consensus 528 ~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~~~~~~~~g~~~ 594 (758)
T 1r6b_X 528 HTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNILLQVMDNGTLTDNNGRKA 594 (758)
T ss_dssp SCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEEETTTEEE
T ss_pred hhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc-------------CHHHHHHHHHHhcCcEEEcCCCCEE
Confidence 0 0 0111111 1112334455566889999999988 567888888888754
Q ss_pred ---CeEEEEccChHH---------HH---------h--hhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhh--
Q 005179 423 ---ELQCIASTTQDE---------HR---------T--QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAH-- 476 (710)
Q Consensus 423 ---~v~vI~att~~~---------~~---------~--~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~-- 476 (710)
++++|+|+|... |. . .-.++|.|.+||+ .|.|++|+.+++..|++.++.++...
T Consensus 595 ~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp ECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356888888621 00 0 0146799999995 89999999999999999887755321
Q ss_pred ---cCCCCCHHHHHHHHHHh
Q 005179 477 ---HNCKFTLEAINAAVHLS 493 (710)
Q Consensus 477 ---~~~~i~~~~l~~l~~ls 493 (710)
..+.+++++++.++..+
T Consensus 675 ~~~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 675 QKGVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp HTTEEEEECHHHHHHHHHHH
T ss_pred HCCcEEEeCHHHHHHHHHhC
Confidence 13578999999888653
No 39
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.72 E-value=8.1e-17 Score=178.05 Aligned_cols=201 Identities=21% Similarity=0.284 Sum_probs=141.4
Q ss_pred CCCCcccCHHHHHHHHHHHHc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh
Q 005179 288 LIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~ 355 (710)
+|++++|.++.++.+.+++.. ..+.+++|+||||||||+++++++..+ +.+++.++++
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~~ 83 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISGS 83 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGG
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCHH
Confidence 577899999887777665432 234679999999999999999999987 6678888887
Q ss_pred hhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC-CCCChHhHHHhhcccc----cCCCeEEEEcc
Q 005179 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSL----GRGELQCIAST 430 (710)
Q Consensus 356 ~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~-~~~~~~~~~~~L~~~l----~~~~v~vI~at 430 (710)
.+. ..+.|....+++.+|..+....|+||||||+|.+......+.+ .........+.|...+ ....+++|++|
T Consensus 84 ~~~--~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 161 (476)
T 2ce7_A 84 DFV--ELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161 (476)
T ss_dssp GTT--TCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred HHH--HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEec
Confidence 776 3456667788899999998888999999999999654322111 0011122334443333 24578999999
Q ss_pred ChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHhhhhhcCCCCcchH
Q 005179 431 TQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPDKA 506 (710)
Q Consensus 431 t~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~-l~~l~~ls~~~i~~r~~p~~a 506 (710)
|.++ .+|+++.+ ||+ .|.|+.|+.++|.+|++.+.++. .+.+++ +..++..+.+|.+ .+.
T Consensus 162 n~~~-----~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~------~l~~~v~l~~la~~t~G~sg-----adL 225 (476)
T 2ce7_A 162 NRPD-----ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK------PLAEDVNLEIIAKRTPGFVG-----ADL 225 (476)
T ss_dssp SCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCTTCCH-----HHH
T ss_pred CChh-----hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC------CCcchhhHHHHHHhcCCCcH-----HHH
Confidence 9876 68899988 998 89999999999999998665532 233322 5566666655542 455
Q ss_pred HHHHHHHHhh
Q 005179 507 IDLVDEAGSR 516 (710)
Q Consensus 507 i~ll~~a~~~ 516 (710)
..++++|+..
T Consensus 226 ~~lv~~Aal~ 235 (476)
T 2ce7_A 226 ENLVNEAALL 235 (476)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6677776543
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.69 E-value=1.4e-16 Score=169.27 Aligned_cols=195 Identities=15% Similarity=0.159 Sum_probs=148.6
Q ss_pred hhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCc-EEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh
Q 005179 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (710)
Q Consensus 278 ~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nv-LL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~ 356 (710)
..|.++++|.+|++++|+++.++.+...+......++ |++||||||||++++++++.+ +..++.++.+.
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~~~ 83 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNGSD 83 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEETTT
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEcccc
Confidence 3688889999999999999999999999887666565 556779999999999999988 67788877543
Q ss_pred hhhccccCccHHHHHHHHHHHHHhc-----CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEc
Q 005179 357 LMAGAKERGELEARVTTLISEIQKS-----GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIAS 429 (710)
Q Consensus 357 l~~g~~~~g~~e~~l~~~~~~~~~~-----~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~a 429 (710)
. + ...+...+...... .+.||||||+|.+.+ .+.++.|..+++. .++++|++
T Consensus 84 ~-------~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------~~~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 84 C-------K--IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------AESQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp C-------C--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------HHHHHHHHHHHHHHGGGCEEEEE
T ss_pred c-------C--HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------HHHHHHHHHHHHhCCCCcEEEEE
Confidence 1 1 22344444443322 568999999999920 4456777777764 56788888
Q ss_pred cChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHH---hhcCCCCCH-HHHHHHHHHhhhhhcCCCCcch
Q 005179 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE---AHHNCKFTL-EAINAAVHLSARYISDRYLPDK 505 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~---~~~~~~i~~-~~l~~l~~ls~~~i~~r~~p~~ 505 (710)
|+... .+++++.+||..+.+++|+.+++.+|++.+...+. ...++.+++ ++++.++..+.+. ...
T Consensus 143 ~n~~~-----~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd------~R~ 211 (324)
T 3u61_B 143 ANNID-----GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD------FRK 211 (324)
T ss_dssp ESSGG-----GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC------TTH
T ss_pred eCCcc-----ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC------HHH
Confidence 88865 68899999999999999999999888777655433 356788988 9999998886654 345
Q ss_pred HHHHHHHHH
Q 005179 506 AIDLVDEAG 514 (710)
Q Consensus 506 ai~ll~~a~ 514 (710)
++..++.++
T Consensus 212 a~~~L~~~~ 220 (324)
T 3u61_B 212 TIGELDSYS 220 (324)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHHh
Confidence 777777765
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.68 E-value=2.3e-15 Score=149.56 Aligned_cols=195 Identities=22% Similarity=0.266 Sum_probs=139.9
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~ 358 (710)
+|.+.+++..+++++|+++.++.+.+.+......+++|+||+|||||++++.+++.+.... ....++.++.....
T Consensus 6 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~~ 80 (226)
T 2chg_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDER 80 (226)
T ss_dssp CHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----GGGGEEEEETTCTT
T ss_pred hHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-----cccceEEecccccc
Confidence 4666778889999999999999999999887777899999999999999999999874321 12334444432211
Q ss_pred hccccCccHHHHHHHHHHHHH------hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc--CCCeEEEEcc
Q 005179 359 AGAKERGELEARVTTLISEIQ------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIAST 430 (710)
Q Consensus 359 ~g~~~~g~~e~~l~~~~~~~~------~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~at 430 (710)
+ . ..+...+.... ...+.+|||||+|.+. .+..+.|..+++ ...+.+|+++
T Consensus 81 ------~-~-~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 81 ------G-I-DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-------------ADAQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp ------C-H-HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-------------HHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred ------C-h-HHHHHHHHHHhcccCCCccCceEEEEeChhhcC-------------HHHHHHHHHHHHhcCCCCeEEEEe
Confidence 1 1 11222222222 2457899999999982 233455555554 3467778777
Q ss_pred ChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHH
Q 005179 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLV 510 (710)
Q Consensus 431 t~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll 510 (710)
+... .+++.+.+||..+.+++|+.++...+++..+.. .++.+++++++.++..+.+. +..++.++
T Consensus 140 ~~~~-----~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~------~r~l~~~l 204 (226)
T 2chg_A 140 NYVS-----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGD------FRKAINAL 204 (226)
T ss_dssp SCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTC------HHHHHHHH
T ss_pred CChh-----hcCHHHHHhCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHH
Confidence 7654 578999999999999999999999998877653 36789999999888776542 45566666
Q ss_pred HHHH
Q 005179 511 DEAG 514 (710)
Q Consensus 511 ~~a~ 514 (710)
+.++
T Consensus 205 ~~~~ 208 (226)
T 2chg_A 205 QGAA 208 (226)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.67 E-value=1.1e-15 Score=165.04 Aligned_cols=205 Identities=20% Similarity=0.280 Sum_probs=133.8
Q ss_pred hhHHhhhhcC-CCCcccCHHHHHHH---HHHHHcCCC--CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEe
Q 005179 279 DLTARASEEL-IDPVIGRETEIQRI---IQILCRRTK--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (710)
Q Consensus 279 ~l~~~~~~~~-l~~liGr~~~i~~l---~~~L~~~~~--~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~l 352 (710)
.+.+.+++.. |++++|++..++.+ ...+..... .++||+||||||||++|+++++.+.. ..| ++.+
T Consensus 32 ~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-~~~-------~~~~ 103 (368)
T 3uk6_A 32 GLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP-DTP-------FTAI 103 (368)
T ss_dssp CBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS-SCC-------EEEE
T ss_pred CcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-cCC-------cccc
Confidence 3445667777 89999999887664 444444333 58999999999999999999999832 122 2222
Q ss_pred ehhhhhh-----------------------------------------------ccccCccHHHHHHHHHHHHHh----c
Q 005179 353 DMGLLMA-----------------------------------------------GAKERGELEARVTTLISEIQK----S 381 (710)
Q Consensus 353 d~~~l~~-----------------------------------------------g~~~~g~~e~~l~~~~~~~~~----~ 381 (710)
++..+.. -....|++...++..+..+.. .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 3uk6_A 104 AGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREE 183 (368)
T ss_dssp EGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhh
Confidence 2111000 001122333344444443321 1
Q ss_pred C-----CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--CeEEEEcc---------ChHHHHhhhhccHHH
Q 005179 382 G-----DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIAST---------TQDEHRTQFEKDKAL 445 (710)
Q Consensus 382 ~-----~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~at---------t~~~~~~~~~~d~aL 445 (710)
+ +.||||||+|.+ ..+.++.|...++.. .++++++. +... ...++++|
T Consensus 184 g~~~~~~~vl~IDEi~~l-------------~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~---~~~l~~~l 247 (368)
T 3uk6_A 184 GKAEIIPGVLFIDEVHML-------------DIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQS---PHGIPIDL 247 (368)
T ss_dssp TC---CBCEEEEESGGGS-------------BHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEE---ETTCCHHH
T ss_pred ccccccCceEEEhhcccc-------------ChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCC---cccCCHHH
Confidence 2 469999999999 445667777666643 23333332 2111 23678999
Q ss_pred HccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhh
Q 005179 446 ARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 446 ~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~ 516 (710)
.+||..+.+++|+.+++..|++..+.. .++.+++++++.++.++.+ ..+..++.+++.++..
T Consensus 248 ~sR~~~i~~~~~~~~e~~~il~~~~~~----~~~~~~~~~l~~l~~~~~~-----G~~r~~~~ll~~a~~~ 309 (368)
T 3uk6_A 248 LDRLLIVSTTPYSEKDTKQILRIRCEE----EDVEMSEDAYTVLTRIGLE-----TSLRYAIQLITAASLV 309 (368)
T ss_dssp HTTEEEEEECCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHH
T ss_pred HhhccEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHH
Confidence 999999999999999999999987663 4688999999999998874 2356788888887644
No 43
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.67 E-value=1.4e-15 Score=161.19 Aligned_cols=184 Identities=21% Similarity=0.194 Sum_probs=131.4
Q ss_pred HhhhhcCCCCcccCHHHHHHHHHHHHc-----CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh
Q 005179 282 ARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (710)
Q Consensus 282 ~~~~~~~l~~liGr~~~i~~l~~~L~~-----~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~ 356 (710)
+++++..|++++|++..++.+...+.. ....+++|+||||||||++|+++++.+ +..++.+++..
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~~ 73 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGPA 73 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTTT
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeccc
Confidence 456788899999999998888877653 345789999999999999999999987 45566665543
Q ss_pred hhhccccCccHHHHHHHHHHHHHh--cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC-------------
Q 005179 357 LMAGAKERGELEARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------- 421 (710)
Q Consensus 357 l~~g~~~~g~~e~~l~~~~~~~~~--~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------- 421 (710)
+.. ...++..+.. ..+.+|||||+|.+. ...++.|...++.
T Consensus 74 ~~~-----------~~~l~~~l~~~~~~~~~l~lDEi~~l~-------------~~~~~~L~~~l~~~~~~~v~~~~~~~ 129 (324)
T 1hqc_A 74 IEK-----------PGDLAAILANSLEEGDILFIDEIHRLS-------------RQAEEHLYPAMEDFVMDIVIGQGPAA 129 (324)
T ss_dssp CCS-----------HHHHHHHHTTTCCTTCEEEETTTTSCC-------------HHHHHHHHHHHHHSEEEECCSSSSSC
T ss_pred cCC-----------hHHHHHHHHHhccCCCEEEEECCcccc-------------cchHHHHHHHHHhhhhHHhccccccc
Confidence 321 1122222322 457799999999982 2334444443332
Q ss_pred -------CCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Q 005179 422 -------GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (710)
Q Consensus 422 -------~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls 493 (710)
.++++|++|+... .++++|.+||. .+.+++|+.+++..+++.... ..++.+++++++.++..+
T Consensus 130 ~~~~~~~~~~~~i~~t~~~~-----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~----~~~~~~~~~~~~~l~~~~ 200 (324)
T 1hqc_A 130 RTIRLELPRFTLIGATTRPG-----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR----LLGVRITEEAALEIGRRS 200 (324)
T ss_dssp CCEEEECCCCEEEEEESCCS-----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHHHHHHHHHS
T ss_pred cccccCCCCEEEEEeCCCcc-----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHc
Confidence 2467889888764 56788999995 899999999998888877665 346789999999888775
Q ss_pred hhhhcCCCCcchHHHHHHHHH
Q 005179 494 ARYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 494 ~~~i~~r~~p~~ai~ll~~a~ 514 (710)
.+ .|..+..+++.+.
T Consensus 201 ~G------~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 201 RG------TMRVAKRLFRRVR 215 (324)
T ss_dssp CS------CHHHHHHHHHHHT
T ss_pred cC------CHHHHHHHHHHHH
Confidence 43 3455666666554
No 44
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.64 E-value=2.7e-15 Score=159.71 Aligned_cols=162 Identities=17% Similarity=0.301 Sum_probs=114.5
Q ss_pred HhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 275 QFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 275 ~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
.|..++.+++++..++.++|+++.++.+...+.. +.+++|+||||||||++++++++.+ +..++.+++
T Consensus 12 ~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~----------~~~~~~i~~ 79 (331)
T 2r44_A 12 LYYRNKIKEVIDEVGKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTM----------DLDFHRIQF 79 (331)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHT----------TCCEEEEEC
T ss_pred HHHHHHHHHHHHHhccceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEec
Confidence 3456788888888899999999999988887765 4689999999999999999999987 334444443
Q ss_pred h------hhhhccc---cCccHHHHHHHHHHHHHhcC---CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC-
Q 005179 355 G------LLMAGAK---ERGELEARVTTLISEIQKSG---DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR- 421 (710)
Q Consensus 355 ~------~l~~g~~---~~g~~e~~l~~~~~~~~~~~---~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~- 421 (710)
. .+..... ..|.+. . ..+ ..||||||++.+ ....++.|.+.++.
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~---------~-~~g~l~~~vl~iDEi~~~-------------~~~~~~~Ll~~l~~~ 136 (331)
T 2r44_A 80 TPDLLPSDLIGTMIYNQHKGNFE---------V-KKGPVFSNFILADEVNRS-------------PAKVQSALLECMQEK 136 (331)
T ss_dssp CTTCCHHHHHEEEEEETTTTEEE---------E-EECTTCSSEEEEETGGGS-------------CHHHHHHHHHHHHHS
T ss_pred CCCCChhhcCCceeecCCCCceE---------e-ccCcccccEEEEEccccC-------------CHHHHHHHHHHHhcC
Confidence 1 1111000 011110 0 011 269999999998 33455555555543
Q ss_pred ------------CCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHH
Q 005179 422 ------------GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLRE 471 (710)
Q Consensus 422 ------------~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~ 471 (710)
..+++|+++|+.++.....++++|.+||. .+.+++|+.+++.+||+....
T Consensus 137 ~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 137 QVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp EEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred ceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 35678888887654343458999999998 699999999999999987653
No 45
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=3.4e-15 Score=157.82 Aligned_cols=195 Identities=18% Similarity=0.257 Sum_probs=145.6
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~ 358 (710)
+|.++++|..+++++|++..++.+...+......+++|+||+|+|||++++.+++.+.+.. ....++.++....
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~- 83 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-----YADGVLELNASDD- 83 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----HHHHEEEECTTSC-
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCCEEEecCccc-
Confidence 5677889999999999999999999999887767799999999999999999999874321 0223455543221
Q ss_pred hccccCccHHHHHHHHHHHHH-------hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEc
Q 005179 359 AGAKERGELEARVTTLISEIQ-------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIAS 429 (710)
Q Consensus 359 ~g~~~~g~~e~~l~~~~~~~~-------~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~a 429 (710)
.+ ...++.+++.+. ...+.|+||||+|.+ .....+.|..+++. ....+|++
T Consensus 84 -----~~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~il~ 143 (323)
T 1sxj_B 84 -----RG--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-------------TAGAQQALRRTMELYSNSTRFAFA 143 (323)
T ss_dssp -----CS--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-------------CHHHHHTTHHHHHHTTTTEEEEEE
T ss_pred -----cC--hHHHHHHHHHHHhccccCCCCCceEEEEECcccC-------------CHHHHHHHHHHHhccCCCceEEEE
Confidence 11 223445555444 233789999999998 33456667766664 55777777
Q ss_pred cChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHH
Q 005179 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDL 509 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~l 509 (710)
|+... .+.+++.+||..+.+++|+.++...+++..+.. .++.+++++++.++..+.+. +..++.+
T Consensus 144 ~~~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~------~r~a~~~ 208 (323)
T 1sxj_B 144 CNQSN-----KIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL----EDVKYTNDGLEAIIFTAEGD------MRQAINN 208 (323)
T ss_dssp ESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTC------HHHHHHH
T ss_pred eCChh-----hchhHHHhhceEEeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHH
Confidence 77644 678999999999999999999999999877663 47789999999998887543 4567777
Q ss_pred HHHHH
Q 005179 510 VDEAG 514 (710)
Q Consensus 510 l~~a~ 514 (710)
++.++
T Consensus 209 l~~~~ 213 (323)
T 1sxj_B 209 LQSTV 213 (323)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 46
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=157.30 Aligned_cols=202 Identities=21% Similarity=0.244 Sum_probs=130.9
Q ss_pred CCCCcccCHHHHHHHHHHHH-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 288 LIDPVIGRETEIQRIIQILC-------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~-------------~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
+|+++.|.++..+.+.+.+. -..+.+++|+||||||||+++++++..+ +...+.++.
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~i~g 77 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES----------GLNFISVKG 77 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEEET
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEEEEc
Confidence 56778888777666655321 1234559999999999999999999987 455677776
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc----CCCeEEEEcc
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAST 430 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~at 430 (710)
..+. ..+.++.+..+..+++.+....++++|+||++.+........ ........+.+...|+ +..++++++|
T Consensus 78 ~~l~--~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~--~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~t 153 (274)
T 2x8a_A 78 PELL--NMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE--TGASVRVVNQLLTEMDGLEARQQVFIMAAT 153 (274)
T ss_dssp TTTC--SSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCSTTCEEEEEEE
T ss_pred HHHH--hhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc--chHHHHHHHHHHHhhhcccccCCEEEEeec
Confidence 6654 345677788899999988777789999999999864321100 0111223333333333 3457788888
Q ss_pred ChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHH--hhhhhcCCCCcc
Q 005179 431 TQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHL--SARYISDRYLPD 504 (710)
Q Consensus 431 t~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~-~~~l~~l~~l--s~~~i~~r~~p~ 504 (710)
+.++ .+|+++.| ||+ .|.++.|+.++|.+||+.+.... ....+. +-.++.++.. +.+| .+.
T Consensus 154 n~p~-----~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~-----sga 220 (274)
T 2x8a_A 154 NRPD-----IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNG---TKPPLDADVNLEAIAGDLRCDCY-----TGA 220 (274)
T ss_dssp SCGG-----GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT---BTTBBCTTCCHHHHHTCSGGGSC-----CHH
T ss_pred CChh-----hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc---cCCCCccccCHHHHHHhhccCCc-----CHH
Confidence 8876 67999999 998 89999999999999999765421 112222 1124444443 2244 345
Q ss_pred hHHHHHHHHHhh
Q 005179 505 KAIDLVDEAGSR 516 (710)
Q Consensus 505 ~ai~ll~~a~~~ 516 (710)
+...++.+|+..
T Consensus 221 dl~~l~~~a~~~ 232 (274)
T 2x8a_A 221 DLSALVREASIC 232 (274)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667777777643
No 47
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.64 E-value=2.1e-15 Score=159.21 Aligned_cols=199 Identities=20% Similarity=0.241 Sum_probs=144.9
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~ 358 (710)
+|.++++|..|++++|++..++.+...+......+++|+||||||||++++.+++.+.... .+..++.++.+...
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~~ 80 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDER 80 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-----HHHHCEEEETTSTT
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-----ccCCeEEEeCcccc
Confidence 6778899999999999999999999888877767899999999999999999999874321 02234555544322
Q ss_pred hccccCccHHHHHHHHHHHH--HhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChHH
Q 005179 359 AGAKERGELEARVTTLISEI--QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDE 434 (710)
Q Consensus 359 ~g~~~~g~~e~~l~~~~~~~--~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~~ 434 (710)
+ .......+..+.... ....+.|+||||+|.+ ..+.++.|..+++. ..+.+|++++...
T Consensus 81 -~---~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 81 -G---IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-------------TADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp -C---TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-------------CHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred -C---hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-------------CHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 1 111112222221110 1134789999999999 34567788888875 5678888887754
Q ss_pred HHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHH
Q 005179 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 435 ~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~ 514 (710)
.+.+++.+||..+.+.+|+.+++..++...+. ..++.+++++++.++..+.+. +..++.+++.++
T Consensus 144 -----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~l~~l~~~~~G~------~r~~~~~l~~~~ 208 (319)
T 2chq_A 144 -----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE----KEGVKITEDGLEALIYISGGD------FRKAINALQGAA 208 (319)
T ss_dssp -----GSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH----TTCCCBCHHHHHHHHHTTTTC------HHHHHHHHHHHH
T ss_pred -----hcchHHHhhCeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHH
Confidence 67899999999999999999999888887665 457889999999988776543 345666666554
No 48
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=3.7e-15 Score=157.81 Aligned_cols=207 Identities=17% Similarity=0.244 Sum_probs=148.2
Q ss_pred hhHHHhhhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEE
Q 005179 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (710)
Q Consensus 271 ~~l~~~~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~ 350 (710)
..+.....+|.++++|..|++++|+++.++.+...+......+++|+||||+|||++++.+++.+.... ....++
T Consensus 6 ~~~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-----~~~~~~ 80 (327)
T 1iqp_A 6 REVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-----WRHNFL 80 (327)
T ss_dssp HHHHHTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-----HHHHEE
T ss_pred hhhcccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCceE
Confidence 345556678999999999999999999999999999887777899999999999999999999874321 012345
Q ss_pred EeehhhhhhccccCccHHHHHHHHHHH--HHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEE
Q 005179 351 SLDMGLLMAGAKERGELEARVTTLISE--IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQC 426 (710)
Q Consensus 351 ~ld~~~l~~g~~~~g~~e~~l~~~~~~--~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~v 426 (710)
.++.+..... ..+...+...... ....++.+++|||+|.+ ..+.++.|...++. ..+.+
T Consensus 81 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~ 143 (327)
T 1iqp_A 81 ELNASDERGI----NVIREKVKEFARTKPIGGASFKIIFLDEADAL-------------TQDAQQALRRTMEMFSSNVRF 143 (327)
T ss_dssp EEETTCHHHH----HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-------------CHHHHHHHHHHHHHTTTTEEE
T ss_pred EeeccccCch----HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-------------CHHHHHHHHHHHHhcCCCCeE
Confidence 5554322110 0111112222110 01145789999999999 33456666666653 56778
Q ss_pred EEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchH
Q 005179 427 IASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~a 506 (710)
|++++... .+.+++.+||..+.+++|+.++...+++..+. ..++.+++++++.++..+.+ .+..+
T Consensus 144 i~~~~~~~-----~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~g------~~r~~ 208 (327)
T 1iqp_A 144 ILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE----NEGLELTEEGLQAILYIAEG------DMRRA 208 (327)
T ss_dssp EEEESCGG-----GSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH----TTTCEECHHHHHHHHHHHTT------CHHHH
T ss_pred EEEeCCcc-----ccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHCCC------CHHHH
Confidence 88777654 57899999999999999999998888887665 45788999999999887654 24566
Q ss_pred HHHHHHHH
Q 005179 507 IDLVDEAG 514 (710)
Q Consensus 507 i~ll~~a~ 514 (710)
+.+++.+.
T Consensus 209 ~~~l~~~~ 216 (327)
T 1iqp_A 209 INILQAAA 216 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 49
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.63 E-value=2.3e-17 Score=170.30 Aligned_cols=169 Identities=24% Similarity=0.323 Sum_probs=111.2
Q ss_pred hcCCCCcccCHHHHHHHHHHHHc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 286 EELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 286 ~~~l~~liGr~~~i~~l~~~L~~------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
+..|++++|.++.++.+.+++.. ..+.++||+||||||||++|++++..+ +..++.++
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~v~ 76 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------HVPFFSMG 76 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH----------TCCCCCCC
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEec
Confidence 44678899998877777665431 345679999999999999999999987 33444455
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCC--CCCCChHhHHHhhccccc-----CCCeEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGR--GNKGTGLDISNLLKPSLG-----RGELQC 426 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~--~~~~~~~~~~~~L~~~l~-----~~~v~v 426 (710)
+..+... +.|.....+..++..+....+.||||||+|.+......+. ..........+.|...+. ...+++
T Consensus 77 ~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 154 (268)
T 2r62_A 77 GSSFIEM--FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIV 154 (268)
T ss_dssp SCTTTTS--CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEE
T ss_pred hHHHHHh--hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEE
Confidence 4444321 1222122344566666666788999999999965421100 000111122333333332 235889
Q ss_pred EEccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHH
Q 005179 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLRE 471 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~ 471 (710)
|++|+..+ .+++++.+ ||. .|.++.|+.+++.+||+.++.
T Consensus 155 i~ttn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 155 LAATNRPE-----ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp EECBSCCT-----TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred EEecCCch-----hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 99999875 57889988 896 799999999999999987654
No 50
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.63 E-value=2.9e-15 Score=157.49 Aligned_cols=213 Identities=21% Similarity=0.274 Sum_probs=137.4
Q ss_pred CcccCHHHHHHHHHHHHc--------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh
Q 005179 291 PVIGRETEIQRIIQILCR--------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~--------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~ 356 (710)
.++|+++.++.+...+.. ..+.+++|+||||||||++|+++++.+ +..++.++++.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~~ 85 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATK 85 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcchh
Confidence 489999999988877654 356789999999999999999999988 56778888877
Q ss_pred hhhccccCc-cHHHHHHHHHHHH----Hh-cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--------
Q 005179 357 LMAGAKERG-ELEARVTTLISEI----QK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (710)
Q Consensus 357 l~~g~~~~g-~~e~~l~~~~~~~----~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------- 422 (710)
+... .+.| .....+..++... .. ..+.||||||+|.+......... ......+++.|.++++.+
T Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~-~~~~~~~~~~Ll~~le~~~~~~~~~~ 163 (310)
T 1ofh_A 86 FTEV-GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA-DVSREGVQRDLLPLVEGSTVSTKHGM 163 (310)
T ss_dssp GSSC-CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSS-HHHHHHHHHHHHHHHHCCEEEETTEE
T ss_pred cccC-CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccccc-chhHHHHHHHHHHHhcCCeEeccccc
Confidence 6531 1211 1122344444321 11 22569999999999654321000 001112356666666543
Q ss_pred ----CeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHH----HHHHHHHh---hcC--CCCCHHHHHH
Q 005179 423 ----ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILL----GLREKYEA---HHN--CKFTLEAINA 488 (710)
Q Consensus 423 ----~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~----~l~~~~~~---~~~--~~i~~~~l~~ 488 (710)
.+++|++++.... ....++++|.+||. .|.|++|+.+++..|++ .+..++.. ..+ +.+++++++.
T Consensus 164 ~~~~~~~~i~~~~~~~~-~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 242 (310)
T 1ofh_A 164 VKTDHILFIASGAFQVA-RPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKK 242 (310)
T ss_dssp EECTTCEEEEEECCSSS-CGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHH
T ss_pred ccCCcEEEEEcCCcccC-CcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHH
Confidence 6778887532100 11268899999997 69999999999999998 44443321 123 4789999999
Q ss_pred HHHHhhhhh--cCCCCcchHHHHHHHHHhh
Q 005179 489 AVHLSARYI--SDRYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 489 l~~ls~~~i--~~r~~p~~ai~ll~~a~~~ 516 (710)
++..+...- .....+..+..+++.+...
T Consensus 243 l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~ 272 (310)
T 1ofh_A 243 IAEAAFRVNEKTENIGARRLHTVMERLMDK 272 (310)
T ss_dssp HHHHHHHHHHHSCCCTTHHHHHHHHHHSHH
T ss_pred HHHHhhhhcccccccCcHHHHHHHHHHHHh
Confidence 998874321 1122345667777766543
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.62 E-value=2.7e-15 Score=150.98 Aligned_cols=200 Identities=19% Similarity=0.180 Sum_probs=139.3
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCC-CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~-~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l------------- 344 (710)
.|.+++++..+++++|++.+++.+...+..... ..++|+||+|+|||++++.+++.+.........
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 91 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHT
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhc
Confidence 456778888999999999999999998877543 358999999999999999999987542211000
Q ss_pred -cCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 345 -~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
....++.++.. .......+..++..+. ...+.+|||||+|.+ ..+..+.|...+
T Consensus 92 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-------------~~~~~~~l~~~l 150 (250)
T 1njg_A 92 GRFVDLIEIDAA--------SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNALLKTL 150 (250)
T ss_dssp TCCSSEEEEETT--------CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-------------CHHHHHHHHHHH
T ss_pred cCCcceEEecCc--------ccccHHHHHHHHHHhhhchhcCCceEEEEECcccc-------------cHHHHHHHHHHH
Confidence 00012222211 0111223445554432 234689999999998 233445555555
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ ..+.+|++|+... .+++.+.+|+..+.+++|+.++..++++..+.. .++.+++++++.+++.+.+
T Consensus 151 ~~~~~~~~~i~~t~~~~-----~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G-- 219 (250)
T 1njg_A 151 EEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEG-- 219 (250)
T ss_dssp HSCCTTEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTT--
T ss_pred hcCCCceEEEEEeCChH-----hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCC--
Confidence 43 4677888777654 577899999989999999999999998877653 4678999999999888755
Q ss_pred cCCCCcchHHHHHHHHH
Q 005179 498 SDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~ 514 (710)
.|..+..+++.++
T Consensus 220 ----~~~~~~~~~~~~~ 232 (250)
T 1njg_A 220 ----SLRDALSLTDQAI 232 (250)
T ss_dssp ----CHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHH
Confidence 3566777777664
No 52
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.61 E-value=2.8e-15 Score=156.77 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=106.7
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHH----HhcCCeE
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI----QKSGDVI 385 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~----~~~~~~I 385 (710)
.+.++||+||||||||++|+++|+.+ +.+++.++++.+. ..+.|..+..++.++..+ +...++|
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~v 102 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAAEIIRKGNMCC 102 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHH--CC---HHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhh--hccCchhHHHHHHHHHHHHHHHhcCCCeE
Confidence 34578999999999999999999999 7888999998887 446788888888888877 4567899
Q ss_pred EEEccchhhhhCCCCCCCCCCChHhHHHhhccccc---------------CCCeEEEEccChHHHHhhhhccHHHHc--c
Q 005179 386 LFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---------------RGELQCIASTTQDEHRTQFEKDKALAR--R 448 (710)
Q Consensus 386 L~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---------------~~~v~vI~att~~~~~~~~~~d~aL~~--R 448 (710)
|||||||.+.+..............+.+.|...+. ..++.+|+|||..+ .+++++.| |
T Consensus 103 l~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~~R 177 (293)
T 3t15_A 103 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRDGR 177 (293)
T ss_dssp EEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHHHH
T ss_pred EEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCCCC
Confidence 99999999976322110001123345566655542 35688999999875 68899987 8
Q ss_pred ccc-eEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q 005179 449 FQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (710)
Q Consensus 449 f~~-I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~ 498 (710)
|+. |. .|+.+++.+|++.+.. .. .++. +.+..++.+|..
T Consensus 178 ~d~~i~--~P~~~~r~~Il~~~~~----~~--~~~~---~~l~~~~~~~~~ 217 (293)
T 3t15_A 178 MEKFYW--APTREDRIGVCTGIFR----TD--NVPA---EDVVKIVDNFPG 217 (293)
T ss_dssp EEEEEE--CCCHHHHHHHHHHHHG----GG--CCCH---HHHHHHHHHSCS
T ss_pred CceeEe--CcCHHHHHHHHHHhcc----CC--CCCH---HHHHHHhCCCCc
Confidence 873 43 5899999999986554 22 3343 345556666643
No 53
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=2.3e-15 Score=161.35 Aligned_cols=203 Identities=16% Similarity=0.193 Sum_probs=141.4
Q ss_pred hhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh
Q 005179 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (710)
Q Consensus 277 ~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~ 356 (710)
..+|.++++|..|++++|+++.++.+...+......+++|+||||||||++++++++.+.... .....+..++.+.
T Consensus 24 ~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 24 QQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELNASD 99 (353)
T ss_dssp --CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEECSSS
T ss_pred CccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEcccc
Confidence 458889999999999999999999999988877667799999999999999999999874310 0023345554432
Q ss_pred hhhccccCccHHHHHHHHHHH-----------H-HhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--C
Q 005179 357 LMAGAKERGELEARVTTLISE-----------I-QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--G 422 (710)
Q Consensus 357 l~~g~~~~g~~e~~l~~~~~~-----------~-~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~ 422 (710)
.. + .+.+...+...... . ....+.||||||+|.+ ....++.|...++. .
T Consensus 100 ~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-------------~~~~~~~Ll~~le~~~~ 162 (353)
T 1sxj_D 100 ER-G---ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-------------TADAQSALRRTMETYSG 162 (353)
T ss_dssp CC-C---HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-------------CHHHHHHHHHHHHHTTT
T ss_pred cc-c---hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-------------CHHHHHHHHHHHHhcCC
Confidence 21 0 01111111111110 0 0123569999999999 33345666666653 3
Q ss_pred CeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCC
Q 005179 423 ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502 (710)
Q Consensus 423 ~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~ 502 (710)
...+|.+++... .+.+++.+||..+.+.+|+.++...+++..+. ..++.+++++++.++.++.+.
T Consensus 163 ~~~~il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~l~~l~~~~~G~------ 227 (353)
T 1sxj_D 163 VTRFCLICNYVT-----RIIDPLASQCSKFRFKALDASNAIDRLRFISE----QENVKCDDGVLERILDISAGD------ 227 (353)
T ss_dssp TEEEEEEESCGG-----GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHHHHHHHHHTSSC------
T ss_pred CceEEEEeCchh-----hCcchhhccCceEEeCCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCC------
Confidence 456666666654 57899999999999999999999988887665 357889999999999887643
Q ss_pred cchHHHHHHHHHh
Q 005179 503 PDKAIDLVDEAGS 515 (710)
Q Consensus 503 p~~ai~ll~~a~~ 515 (710)
+..++.+++.+..
T Consensus 228 ~r~~~~~l~~~~~ 240 (353)
T 1sxj_D 228 LRRGITLLQSASK 240 (353)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567777776553
No 54
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.60 E-value=5.7e-14 Score=149.68 Aligned_cols=191 Identities=19% Similarity=0.243 Sum_probs=129.3
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHc-----CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~-----~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
.|.+.+++..|+.++|++..++.+...+.. ....+++|+||||+||||+++.++..+ ++.+....
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l----------~~~~~~~s 83 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL----------QTNIHVTS 83 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH----------TCCEEEEE
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 456778899999999999888777666543 234789999999999999999999988 33333332
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC------------
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------ 421 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------ 421 (710)
...+.. + ..+..++... ....|+||||+|.+.. ...+.|...++.
T Consensus 84 g~~~~~-----~---~~l~~~~~~~--~~~~v~~iDE~~~l~~-------------~~~e~L~~~~~~~~~~i~~~~~~~ 140 (334)
T 1in4_A 84 GPVLVK-----Q---GDMAAILTSL--ERGDVLFIDEIHRLNK-------------AVEELLYSAIEDFQIDIMIGKGPS 140 (334)
T ss_dssp TTTCCS-----H---HHHHHHHHHC--CTTCEEEEETGGGCCH-------------HHHHHHHHHHHTSCCCC-------
T ss_pred chHhcC-----H---HHHHHHHHHc--cCCCEEEEcchhhcCH-------------HHHHHHHHHHHhcccceeeccCcc
Confidence 211111 1 1122222221 2356999999999832 122222222211
Q ss_pred --------CCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005179 422 --------GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (710)
Q Consensus 422 --------~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~l 492 (710)
..+.+|++++... .+++.+++||. .+.+++|+.+++.+||+..... .++.++++++..++..
T Consensus 141 ~~~i~~~l~~~~li~at~~~~-----~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~----~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 141 AKSIRIDIQPFTLVGATTRSG-----LLSSPLRSRFGIILELDFYTVKELKEIIKRAASL----MDVEIEDAAAEMIAKR 211 (334)
T ss_dssp --------CCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHT
T ss_pred cccccccCCCeEEEEecCCcc-----cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHh
Confidence 1356777777764 68899999997 6889999999999999987663 4688999999888876
Q ss_pred hhhhhcCCCCcchHHHHHHHHHhhh
Q 005179 493 SARYISDRYLPDKAIDLVDEAGSRA 517 (710)
Q Consensus 493 s~~~i~~r~~p~~ai~ll~~a~~~~ 517 (710)
+.+ .|..+..+++.+...+
T Consensus 212 ~~G------~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 212 SRG------TPRIAIRLTKRVRDML 230 (334)
T ss_dssp STT------CHHHHHHHHHHHHHHH
T ss_pred cCC------ChHHHHHHHHHHHHHH
Confidence 543 3567788888765443
No 55
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.60 E-value=1.2e-14 Score=157.11 Aligned_cols=200 Identities=19% Similarity=0.181 Sum_probs=142.0
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCccc-------------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------- 344 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~l------------- 344 (710)
.|.++++|..|++++|++++++.+...+......+ ++|+||+|+|||++++.+++.+.........
T Consensus 5 ~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 (373)
T ss_dssp CHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHT
T ss_pred HHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhc
Confidence 57788999999999999999999999887755444 6899999999999999999988542211000
Q ss_pred -cCceEEEeehhhhhhccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 345 -LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 345 -~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
....++.++... ...... ++.+++.+.. .++.||||||+|.+ .....+.|...+
T Consensus 85 ~~~~~~~~~~~~~----~~~~~~----~~~l~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~Ll~~l 143 (373)
T 1jr3_A 85 GRFVDLIEIDAAS----RTKVED----TRDLLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNALLKTL 143 (373)
T ss_dssp SCCSSCEEEETTC----SCCSSC----HHHHHHHTTSCCSSSSSEEEEEECGGGS-------------CHHHHHHHHHHH
T ss_pred cCCCceEEecccc----cCCHHH----HHHHHHHHhhccccCCeEEEEEECcchh-------------cHHHHHHHHHHH
Confidence 001223332211 011122 4445555432 34689999999999 334556666666
Q ss_pred cC--CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q 005179 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (710)
Q Consensus 420 ~~--~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i 497 (710)
++ ..+++|++++... .+.+.+.+|+..+.+.+|+.++...+++..+.. .++.+++++++.++..+.+.
T Consensus 144 e~~~~~~~~Il~~~~~~-----~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~----~~~~~~~~a~~~l~~~~~G~- 213 (373)
T 1jr3_A 144 EEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGS- 213 (373)
T ss_dssp HSCCSSEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHSSSC-
T ss_pred hcCCCceEEEEEeCChH-----hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHCCCC-
Confidence 64 5677787777654 567899999999999999999999998877664 47889999999988886543
Q ss_pred cCCCCcchHHHHHHHHH
Q 005179 498 SDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 498 ~~r~~p~~ai~ll~~a~ 514 (710)
+..+..+++.+.
T Consensus 214 -----~r~~~~~l~~~~ 225 (373)
T 1jr3_A 214 -----LRDALSLTDQAI 225 (373)
T ss_dssp -----HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHH
Confidence 456777777665
No 56
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.7e-15 Score=154.16 Aligned_cols=213 Identities=10% Similarity=0.066 Sum_probs=141.2
Q ss_pred cccCHHHHHHHHHHHH----cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh---------
Q 005179 292 VIGRETEIQRIIQILC----RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------- 358 (710)
Q Consensus 292 liGr~~~i~~l~~~L~----~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~--------- 358 (710)
+.||++|+..+...|. ...+++++|+||||||||++++.+++.+........+....++.+++..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 7889999998886654 467788999999999999999999999854211111113456666653321
Q ss_pred ----hccc-cCccHHHHHHHHHHHH--HhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhc-ccccCCCeEEEEcc
Q 005179 359 ----AGAK-ERGELEARVTTLISEI--QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK-PSLGRGELQCIAST 430 (710)
Q Consensus 359 ----~g~~-~~g~~e~~l~~~~~~~--~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~-~~l~~~~v~vI~at 430 (710)
.|.. ..+.....+..+|..+ ....+.|+||||+|.+. . ..-+.+++. ......++.+|+++
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~----------q~~L~~l~~~~~~~~s~~~vI~i~ 170 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S----------EKILQYFEKWISSKNSKLSIICVG 170 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C----------THHHHHHHHHHHCSSCCEEEEEEC
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c----------chHHHHHHhcccccCCcEEEEEEe
Confidence 1111 1233345567777665 23457899999999994 1 222223221 11246678888887
Q ss_pred ChHHHHhhhhccHHHHcccc--ceEecCCCHHHHHHHHHHHHHHHHhh-------------------------------c
Q 005179 431 TQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAH-------------------------------H 477 (710)
Q Consensus 431 t~~~~~~~~~~d~aL~~Rf~--~I~v~~Ps~~~~~~IL~~l~~~~~~~-------------------------------~ 477 (710)
|..++.. ..+++++.+||. .|.|++++.+|...||+..+...... .
T Consensus 171 n~~d~~~-~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (318)
T 3te6_A 171 GHNVTIR-EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVI 249 (318)
T ss_dssp CSSCCCH-HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEE
T ss_pred cCcccch-hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccc
Confidence 7643211 235677888985 69999999999999999988765321 0
Q ss_pred CCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhhhh
Q 005179 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI 519 (710)
Q Consensus 478 ~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~~~ 519 (710)
.+.+++++++.+++....--++ .++|++++..|+..+..
T Consensus 250 ~~~i~~~ai~~~A~~vA~~~GD---~R~Al~ilr~A~~~ae~ 288 (318)
T 3te6_A 250 NHKINNKITQLIAKNVANVSGS---TEKAFKICEAAVEISKK 288 (318)
T ss_dssp CEECCHHHHHHHHHHHHHHHCS---HHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHhhCCh---HHHHHHHHHHHHHHHHH
Confidence 1257999999998875554333 46889999988755433
No 57
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.59 E-value=8.5e-15 Score=149.80 Aligned_cols=202 Identities=21% Similarity=0.271 Sum_probs=130.5
Q ss_pred cCCCCcccCHHHHHHHHHHHHc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
-+|++++|.++....+.++... ..+.+++|+||||||||+++++++..+ +...+.++.
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~----------~~~~i~~~~ 82 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITASG 82 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeeH
Confidence 3567788888766555443221 123458999999999999999999887 345666776
Q ss_pred hhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC-CCCChHhHHHhhccccc----CCCeEEEEc
Q 005179 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLG----RGELQCIAS 429 (710)
Q Consensus 355 ~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~-~~~~~~~~~~~L~~~l~----~~~v~vI~a 429 (710)
..+.. ...+.....+..+++.+....+.++|+||+|.+......+.+ .........+.+...++ +..++++++
T Consensus 83 ~~~~~--~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 83 SDFVE--MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHH--SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEE
T ss_pred HHHHH--HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEc
Confidence 66542 234556667788888776666889999999998643221000 00111122333333332 234677788
Q ss_pred cChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHhhhhhcCCCCcch
Q 005179 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPDK 505 (710)
Q Consensus 430 tt~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~-l~~l~~ls~~~i~~r~~p~~ 505 (710)
++.++ .+|+++.+ ||. .|.++.|+.++|.+||+.+.. +..+.+++ +..++..+.+|.+ .+
T Consensus 161 t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~------~~~~~~~~~~~~la~~~~G~~~-----~d 224 (254)
T 1ixz_A 161 TNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFVG-----AD 224 (254)
T ss_dssp ESCGG-----GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT------TSCBCTTCCHHHHHHTCTTCCH-----HH
T ss_pred cCCch-----hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc------CCCCCcccCHHHHHHHcCCCCH-----HH
Confidence 88775 58899998 786 799999999999999986543 23444433 6667666666543 45
Q ss_pred HHHHHHHHHhh
Q 005179 506 AIDLVDEAGSR 516 (710)
Q Consensus 506 ai~ll~~a~~~ 516 (710)
...++..|+..
T Consensus 225 l~~~~~~a~~~ 235 (254)
T 1ixz_A 225 LENLLNEAALL 235 (254)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56677766543
No 58
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.59 E-value=3e-15 Score=166.52 Aligned_cols=204 Identities=22% Similarity=0.271 Sum_probs=137.3
Q ss_pred hcCCCCcccCHHHHHHHHHHHHc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 286 EELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 286 ~~~l~~liGr~~~i~~l~~~L~~------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
.-+|++++|.++.+..+.++... ..+.+++|+||||||||+|+++++..+ +..++.++
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i~ 96 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITAS 96 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEEE
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 44688999999887777665421 123568999999999999999999887 45677888
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC-CCChHhHHHhhccccc----CCCeEEEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RGELQCIA 428 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l~----~~~v~vI~ 428 (710)
...+. ..+.|....++..+|+.+....++++||||||.+......+.+. ........+.|...|+ +..+++|+
T Consensus 97 g~~~~--~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 97 GSDFV--EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 174 (499)
T ss_dssp GGGGT--SSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEE
T ss_pred hhHHH--HhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEE
Confidence 77765 34566677778888877665567899999999986543211000 0011122333333333 34578888
Q ss_pred ccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHhhhhhcCCCCcc
Q 005179 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPD 504 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~-l~~l~~ls~~~i~~r~~p~ 504 (710)
+|+.++ .+|+++.| ||+ .|.|+.|+.++|.+||+.+.+ ++.+++++ +..++..+.+|. +.
T Consensus 175 atn~p~-----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~------~~~l~~dv~l~~lA~~t~G~~-----ga 238 (499)
T 2dhr_A 175 ATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFV-----GA 238 (499)
T ss_dssp CCSCGG-----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS------SSCCCCSSTTHHHHTTSCSCC-----HH
T ss_pred ecCChh-----hcCcccccccccceEEecCCCCHHHHHHHHHHHHh------cCCCChHHHHHHHHHhcCCCC-----HH
Confidence 888876 48999998 786 899999999999999975433 33444433 555555554443 24
Q ss_pred hHHHHHHHHHhhh
Q 005179 505 KAIDLVDEAGSRA 517 (710)
Q Consensus 505 ~ai~ll~~a~~~~ 517 (710)
+...++.+|+..+
T Consensus 239 dL~~lv~~Aa~~A 251 (499)
T 2dhr_A 239 DLENLLNEAALLA 251 (499)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566777766443
No 59
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.57 E-value=3.9e-14 Score=146.99 Aligned_cols=202 Identities=21% Similarity=0.277 Sum_probs=131.2
Q ss_pred hcCCCCcccCHHHHHHHHHHHHc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 286 EELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 286 ~~~l~~liGr~~~i~~l~~~L~~------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
+-+|++++|.++....+.++... ..+.+++|+||||||||+++++++..+ ....+.++
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~----------~~~~i~~~ 105 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITAS 105 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEE
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc----------CCCEEEec
Confidence 34577899998777666554321 123458999999999999999999887 34566677
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCC-CCCChHhHHHhhccccc----CCCeEEEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLG----RGELQCIA 428 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~-~~~~~~~~~~~L~~~l~----~~~v~vI~ 428 (710)
...+.. ...+.....+..+++.+....+.++|+||++.+......+.+ .........+.+...++ +..+++++
T Consensus 106 ~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 106 GSDFVE--MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHH--STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEE
T ss_pred HHHHHH--HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 665542 234556667788888877667889999999988643211000 00001122233333333 23467778
Q ss_pred ccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHHhhhhhcCCCCcc
Q 005179 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPD 504 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~-l~~l~~ls~~~i~~r~~p~ 504 (710)
+++.++ .+|+++.+ ||. .|.++.|+.++|.+||+.+.. +..+++++ +..++..+.+|.. .
T Consensus 184 ~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~------~~~~~~~~~~~~la~~~~G~~~-----~ 247 (278)
T 1iy2_A 184 ATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFVG-----A 247 (278)
T ss_dssp EESCTT-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT------TSCBCTTCCHHHHHHTCTTCCH-----H
T ss_pred ecCCch-----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc------cCCCCcccCHHHHHHHcCCCCH-----H
Confidence 888775 58999998 786 799999999999999986543 23444443 5566666655532 4
Q ss_pred hHHHHHHHHHh
Q 005179 505 KAIDLVDEAGS 515 (710)
Q Consensus 505 ~ai~ll~~a~~ 515 (710)
+...++..|+.
T Consensus 248 dl~~l~~~a~~ 258 (278)
T 1iy2_A 248 DLENLLNEAAL 258 (278)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45556776654
No 60
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=1.9e-15 Score=170.65 Aligned_cols=198 Identities=15% Similarity=0.193 Sum_probs=133.7
Q ss_pred hhhhHHhhhhcCCCCcccCHHHHHHHHHHHHc-----------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcC
Q 005179 277 CVDLTARASEELIDPVIGRETEIQRIIQILCR-----------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAE 339 (710)
Q Consensus 277 ~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~-----------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~ 339 (710)
...|+++++|.+|++++|++..++.+.+++.. ...+++||+||||||||++|+++++.+
T Consensus 26 ~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---- 101 (516)
T 1sxj_A 26 DKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---- 101 (516)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----
T ss_pred CCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----
Confidence 34688899999999999999999999988765 134689999999999999999999988
Q ss_pred CCccccCceEEEeehhhhhhccccCccHHHH---------HHHHHHHH-----HhcCCeEEEEccchhhhhCCCCCCCCC
Q 005179 340 VPVFLLSKRIMSLDMGLLMAGAKERGELEAR---------VTTLISEI-----QKSGDVILFIDEVHTLIGSGTVGRGNK 405 (710)
Q Consensus 340 ~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~---------l~~~~~~~-----~~~~~~IL~IDEid~l~~~~~~~~~~~ 405 (710)
+..++.++++.+.... ..+.. +..++..+ ....+.||||||+|.+...
T Consensus 102 ------~~~~i~in~s~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~-------- 163 (516)
T 1sxj_A 102 ------GYDILEQNASDVRSKT----LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG-------- 163 (516)
T ss_dssp ------TCEEEEECTTSCCCHH----HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT--------
T ss_pred ------CCCEEEEeCCCcchHH----HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh--------
Confidence 6778887765432110 00000 01111111 1245789999999999542
Q ss_pred CChHhHHHhhcccccCCC--eEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCH
Q 005179 406 GTGLDISNLLKPSLGRGE--LQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTL 483 (710)
Q Consensus 406 ~~~~~~~~~L~~~l~~~~--v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~ 483 (710)
.....+.|..+++..+ +++|+++.... .+ +.+.+|+..|.|++|+.+++.++|..++.+ .++.+++
T Consensus 164 --~~~~l~~L~~~l~~~~~~iIli~~~~~~~-----~l-~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~----~~~~i~~ 231 (516)
T 1sxj_A 164 --DRGGVGQLAQFCRKTSTPLILICNERNLP-----KM-RPFDRVCLDIQFRRPDANSIKSRLMTIAIR----EKFKLDP 231 (516)
T ss_dssp --STTHHHHHHHHHHHCSSCEEEEESCTTSS-----TT-GGGTTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCCCT
T ss_pred --hHHHHHHHHHHHHhcCCCEEEEEcCCCCc-----cc-hhhHhceEEEEeCCCCHHHHHHHHHHHHHH----cCCCCCH
Confidence 1122344555555444 44444433221 12 347778889999999999999999877663 3678999
Q ss_pred HHHHHHHHHhhhhhcCCCCcchHHHHHHHHH
Q 005179 484 EAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (710)
Q Consensus 484 ~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~ 514 (710)
++++.++..+.+. ...++.++..++
T Consensus 232 ~~l~~la~~s~Gd------iR~~i~~L~~~~ 256 (516)
T 1sxj_A 232 NVIDRLIQTTRGD------IRQVINLLSTIS 256 (516)
T ss_dssp THHHHHHHHTTTC------HHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCc------HHHHHHHHHHHH
Confidence 9999998886542 234566655443
No 61
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=6.6e-15 Score=158.08 Aligned_cols=204 Identities=12% Similarity=0.135 Sum_probs=137.5
Q ss_pred hhHHhhhhcCCCCcccCHHHHHHHHHHH-HcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccc-c-----------
Q 005179 279 DLTARASEELIDPVIGRETEIQRIIQIL-CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL-L----------- 345 (710)
Q Consensus 279 ~l~~~~~~~~l~~liGr~~~i~~l~~~L-~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l-~----------- 345 (710)
.|.++++|.+|++++|+++.++.+...+ ......+++|+||+|+||||+++.++..+......... .
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 5788999999999999999999998887 66555669999999999999999999976332111000 0
Q ss_pred -------CceEEEeehhhhhhccccCccHHHHHHHHHHHHH--------------hcCCeEEEEccchhhhhCCCCCCCC
Q 005179 346 -------SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ--------------KSGDVILFIDEVHTLIGSGTVGRGN 404 (710)
Q Consensus 346 -------~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~--------------~~~~~IL~IDEid~l~~~~~~~~~~ 404 (710)
...++.++.... +. .. ...++..++.+. ..++.|++|||++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~--~~---~~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L---------- 146 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDM--GN---ND-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL---------- 146 (354)
T ss_dssp ---CCEECSSEEEECCC---------CC-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSS----------
T ss_pred ceeeeecccceEEecHhhc--CC---cc-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc----------
Confidence 011122221110 00 01 012333443332 124669999999997
Q ss_pred CCChHhHHHhhccccc--CCCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 005179 405 KGTGLDISNLLKPSLG--RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFT 482 (710)
Q Consensus 405 ~~~~~~~~~~L~~~l~--~~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~ 482 (710)
.....+.|...++ ..+..+|.+|+... .+.+++.+||..+.+++|+.++...+|+.++.. .++.++
T Consensus 147 ---~~~~~~~L~~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 214 (354)
T 1sxj_E 147 ---TKDAQAALRRTMEKYSKNIRLIMVCDSMS-----PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN----ERIQLE 214 (354)
T ss_dssp ---CHHHHHHHHHHHHHSTTTEEEEEEESCSC-----SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCEEC
T ss_pred ---CHHHHHHHHHHHHhhcCCCEEEEEeCCHH-----HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH----cCCCCC
Confidence 3334555555554 23466666666544 577899999999999999999999999887764 378889
Q ss_pred -HHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhh
Q 005179 483 -LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 483 -~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~ 516 (710)
+++++.++..+.+. ++.++.+++.+...
T Consensus 215 ~~~~l~~i~~~~~G~------~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 215 TKDILKRIAQASNGN------LRVSLLMLESMALN 243 (354)
T ss_dssp CSHHHHHHHHHHTTC------HHHHHHHHTHHHHT
T ss_pred cHHHHHHHHHHcCCC------HHHHHHHHHHHHHh
Confidence 99999999887553 45677787766543
No 62
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.55 E-value=7.4e-14 Score=148.15 Aligned_cols=196 Identities=14% Similarity=0.146 Sum_probs=125.7
Q ss_pred CCCCcc-cC--HHHHHHHHHHHHcC--CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccc
Q 005179 288 LIDPVI-GR--ETEIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (710)
Q Consensus 288 ~l~~li-Gr--~~~i~~l~~~L~~~--~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~ 362 (710)
+|++++ |. ......+..++... ..++++|+||||||||++++++++.+... +..++.+++..+...
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~~~~~~~-- 79 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSADDFAQA-- 79 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHH--
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHH--
Confidence 567776 43 33444455555443 35789999999999999999999988543 456777777665321
Q ss_pred cCccHHHH-HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhc
Q 005179 363 ERGELEAR-VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441 (710)
Q Consensus 363 ~~g~~e~~-l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~ 441 (710)
..+.+... ...+.... ..+.+|||||+|.+.+.. .....+...+....+.+..++|++++... ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~vL~iDEi~~l~~~~-------~~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~l 148 (324)
T 1l8q_A 80 MVEHLKKGTINEFRNMY--KSVDLLLLDDVQFLSGKE-------RTQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDGV 148 (324)
T ss_dssp HHHHHHHTCHHHHHHHH--HTCSEEEEECGGGGTTCH-------HHHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTTS
T ss_pred HHHHHHcCcHHHHHHHh--cCCCEEEEcCcccccCCh-------HHHHHHHHHHHHHHHCCCeEEEEecCChH--HHHHh
Confidence 11111110 11122222 236799999999994321 11334445555555566666666655433 22357
Q ss_pred cHHHHccc---cceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHh
Q 005179 442 DKALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 442 d~aL~~Rf---~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~ 515 (710)
+++|.+|| ..+.+++ +.+++..|++..+. ..++.+++++++.++..+ +. ...+..+++.++.
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~----~~~~~l~~~~l~~l~~~~-g~------~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK----EFNLELRKEVIDYLLENT-KN------VREIEGKIKLIKL 213 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH----HTTCCCCHHHHHHHHHHC-SS------HHHHHHHHHHHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhC-CC------HHHHHHHHHHHHH
Confidence 89999999 4789999 99999999998776 357899999999988876 33 2345555655553
No 63
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.54 E-value=2e-13 Score=151.66 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=56.1
Q ss_pred hccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh-hhhhcCCCCcchHHHHHHHHHhh
Q 005179 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS-ARYISDRYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 440 ~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls-~~~i~~r~~p~~ai~ll~~a~~~ 516 (710)
.+++++++||..+.+++|+.++..++|+..+.. .++.++++++..++.++ .+ .+..++.+++.|...
T Consensus 349 ~l~~~i~sR~~~~~~~~~~~~e~~~iL~~~~~~----~~~~~~~~~~~~i~~~a~~g------~~r~a~~ll~~a~~~ 416 (456)
T 2c9o_A 349 GIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQT----EGINISEEALNHLGEIGTKT------TLRYSVQLLTPANLL 416 (456)
T ss_dssp TCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHHHS------CHHHHHHTHHHHHHH
T ss_pred cCChhHHhhcceeeCCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHccCC------CHHHHHHHHHHHHHH
Confidence 678999999999999999999999999987763 36789999999999887 43 467888888877543
No 64
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.54 E-value=4.3e-14 Score=146.09 Aligned_cols=197 Identities=15% Similarity=0.120 Sum_probs=125.4
Q ss_pred CCcccCHHHHHHHHH-------HHH---cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh
Q 005179 290 DPVIGRETEIQRIIQ-------ILC---RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA 359 (710)
Q Consensus 290 ~~liGr~~~i~~l~~-------~L~---~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~ 359 (710)
+.++|++..++.++. .+. .....++||+||||||||++|+++++.+ +..++.+++.....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~~ 102 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKMI 102 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGCT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHhc
Confidence 357787777665554 332 3445689999999999999999999987 56677776655443
Q ss_pred ccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc-----CCCeEEEEccChHH
Q 005179 360 GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIASTTQDE 434 (710)
Q Consensus 360 g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~-----~~~v~vI~att~~~ 434 (710)
|. ..+.....+..++..+....+.+|||||+|.+++....+ ......+.+.|...+. ...+++|++|+.++
T Consensus 103 g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 103 GF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG---PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp TC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT---TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred CC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC---hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 32 122334556777877776778899999999997653321 1224455666655554 23567888888875
Q ss_pred HHhhhhccH-HHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHH
Q 005179 435 HRTQFEKDK-ALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDE 512 (710)
Q Consensus 435 ~~~~~~~d~-aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~ 512 (710)
.+++ .+.+||. .|.+++++. +.+|...+.. ...++++.+..++..+.+|-.... ...++++++.
T Consensus 179 -----~l~~~~l~~rf~~~i~~p~l~~--r~~i~~i~~~------~~~~~~~~~~~l~~~~~g~~~~g~-ir~l~~~l~~ 244 (272)
T 1d2n_A 179 -----VLQEMEMLNAFSTTIHVPNIAT--GEQLLEALEL------LGNFKDKERTTIAQQVKGKKVWIG-IKKLLMLIEM 244 (272)
T ss_dssp -----HHHHTTCTTTSSEEEECCCEEE--HHHHHHHHHH------HTCSCHHHHHHHHHHHTTSEEEEC-HHHHHHHHHH
T ss_pred -----hcchhhhhcccceEEcCCCccH--HHHHHHHHHh------cCCCCHHHHHHHHHHhcCCCcccc-HHHHHHHHHH
Confidence 3445 5778985 566655543 3333332222 135789999999988877532111 2345555555
Q ss_pred HH
Q 005179 513 AG 514 (710)
Q Consensus 513 a~ 514 (710)
+.
T Consensus 245 a~ 246 (272)
T 1d2n_A 245 SL 246 (272)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 65
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=1.2e-13 Score=147.58 Aligned_cols=184 Identities=20% Similarity=0.244 Sum_probs=135.9
Q ss_pred hhhhHHhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh
Q 005179 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (710)
Q Consensus 277 ~~~l~~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~ 356 (710)
..+|.++++|..|++++|++..++.+...+......+++|+||||+|||++++++++.+..... ...+..++.+.
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~~~~~~~ 86 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-----SNMVLELNASD 86 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-----HHHEEEECTTS
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-----cceEEEEcCcc
Confidence 3478889999999999999999999998888776677999999999999999999999853210 12344444322
Q ss_pred hhhccccCccHHHHHHHHHHHHHh------cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEE
Q 005179 357 LMAGAKERGELEARVTTLISEIQK------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIA 428 (710)
Q Consensus 357 l~~g~~~~g~~e~~l~~~~~~~~~------~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 428 (710)
..+ ...++..+..+.. .+..|++|||+|.+ ..+.++.|..+++. ....+|.
T Consensus 87 ------~~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~il 145 (340)
T 1sxj_C 87 ------DRG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-------------TNAAQNALRRVIERYTKNTRFCV 145 (340)
T ss_dssp ------CCS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-------------CHHHHHHHHHHHHHTTTTEEEEE
T ss_pred ------ccc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-------------CHHHHHHHHHHHhcCCCCeEEEE
Confidence 112 1223333433331 23679999999998 33456667666663 4566777
Q ss_pred ccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
+++... .+.+++.+||..+.+.+++.++...++..++. ..++.+++++++.++.++.+
T Consensus 146 ~~n~~~-----~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~----~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 146 LANYAH-----KLTPALLSQCTRFRFQPLPQEAIERRIANVLV----HEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp EESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH----TTTCCBCHHHHHHHHHHHTT
T ss_pred EecCcc-----ccchhHHhhceeEeccCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC
Confidence 777654 67899999999999999999998888877664 34788999999999988765
No 66
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.53 E-value=5.9e-14 Score=155.00 Aligned_cols=203 Identities=17% Similarity=0.211 Sum_probs=128.3
Q ss_pred CCCCcc-cCHH--HHHHHHHHHHcCC-CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcccc
Q 005179 288 LIDPVI-GRET--EIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (710)
Q Consensus 288 ~l~~li-Gr~~--~i~~l~~~L~~~~-~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~ 363 (710)
+|+.++ |... ....+..+...+. .++++|+||||+|||++++++++.+.... .+..++.+++..+... .
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~-----~~~~v~~v~~~~~~~~--~ 175 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFLND--L 175 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHC-----CSSCEEEEEHHHHHHH--H
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHHH--H
Confidence 566776 5433 3334444444433 67899999999999999999999885431 1456777776655311 1
Q ss_pred CccHHHH-HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhcc
Q 005179 364 RGELEAR-VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD 442 (710)
Q Consensus 364 ~g~~e~~-l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d 442 (710)
.+.+... ...+ .......+.||||||+|.+.+.. .....+...+....+.+..++|++.++.. ....++
T Consensus 176 ~~~~~~~~~~~~-~~~~~~~~~vL~IDEi~~l~~~~-------~~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~ 245 (440)
T 2z4s_A 176 VDSMKEGKLNEF-REKYRKKVDILLIDDVQFLIGKT-------GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQ 245 (440)
T ss_dssp HHHHHTTCHHHH-HHHHTTTCSEEEEECGGGGSSCH-------HHHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCC
T ss_pred HHHHHcccHHHH-HHHhcCCCCEEEEeCcccccCCh-------HHHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHH
Confidence 0001000 1111 11111256799999999994321 11334455555555667666666555433 122378
Q ss_pred HHHHccc---cceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhhh
Q 005179 443 KALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (710)
Q Consensus 443 ~aL~~Rf---~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~~ 517 (710)
+.|.+|| ..+.+++|+.+++..||+..+.. .++.+++++++.++..+.+ .+..+..+++.+...+
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~----~~~~i~~e~l~~la~~~~g------n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI----EHGELPEEVLNFVAENVDD------NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHHHHCCS------CHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHHHHH
Confidence 9999999 47999999999999999987763 4788999999988876543 2455666777666544
No 67
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.53 E-value=8.3e-14 Score=140.36 Aligned_cols=192 Identities=13% Similarity=0.094 Sum_probs=125.8
Q ss_pred cCCCCcccC---HHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcccc
Q 005179 287 ELIDPVIGR---ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (710)
Q Consensus 287 ~~l~~liGr---~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~ 363 (710)
..|++++|. +..+..+...+......+++|+||||||||++++.+++.+... +..++.+++..+.....
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~- 96 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPLGIHASIST- 96 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEGGGGGGSCG-
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHH-
Confidence 467788873 4667777777766667899999999999999999999988543 45667777666542210
Q ss_pred CccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccH
Q 005179 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDK 443 (710)
Q Consensus 364 ~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~ 443 (710)
..+..+ ..+.+|||||++.+.... .....+...+....+.+.+.+|.+++... ......++
T Consensus 97 ---------~~~~~~--~~~~vliiDe~~~~~~~~-------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~-~~~~~~~~ 157 (242)
T 3bos_A 97 ---------ALLEGL--EQFDLICIDDVDAVAGHP-------LWEEAIFDLYNRVAEQKRGSLIVSASASP-MEAGFVLP 157 (242)
T ss_dssp ---------GGGTTG--GGSSEEEEETGGGGTTCH-------HHHHHHHHHHHHHHHHCSCEEEEEESSCT-TTTTCCCH
T ss_pred ---------HHHHhc--cCCCEEEEeccccccCCH-------HHHHHHHHHHHHHHHcCCCeEEEEcCCCH-HHHHHhhh
Confidence 111111 236799999999983220 00222334444334455553444444221 01123458
Q ss_pred HHHccc---cceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHh
Q 005179 444 ALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 444 aL~~Rf---~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~ 515 (710)
.+.+|| ..+.+++|+.+++.++++..+. ..++.+++++++.++..+.+. +..+..+++.++.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~g~------~r~l~~~l~~~~~ 222 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAA----MRGLQLPEDVGRFLLNRMARD------LRTLFDVLDRLDK 222 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHH----HTTCCCCHHHHHHHHHHTTTC------HHHHHHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHccCC------HHHHHHHHHHHHH
Confidence 999999 6899999999999999988776 347889999999888776442 3455666666553
No 68
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.51 E-value=9.4e-14 Score=146.19 Aligned_cols=180 Identities=21% Similarity=0.265 Sum_probs=123.1
Q ss_pred CcccCHHHHHHHHHHHHcCC---------CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhc-
Q 005179 291 PVIGRETEIQRIIQILCRRT---------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG- 360 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~~---------~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g- 360 (710)
.++|++..++.+...+.... ..+++|+||||||||++|++++..+... +..++.++++.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-------~~~~~~~~~~~~~~~~ 90 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEKH 90 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-------GGGEEEEEGGGCCSTT
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-------CcceEEeecccccccc
Confidence 48899999998888776531 2468999999999999999999988543 334566666543211
Q ss_pred -------cc--cCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC---------
Q 005179 361 -------AK--ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (710)
Q Consensus 361 -------~~--~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--------- 422 (710)
.. +.|.-. ...+...+....+.||||||++.+ ..++++.|..+++.+
T Consensus 91 ~~~~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~le~~~~~~~~~~~ 155 (311)
T 4fcw_A 91 AVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKA-------------HPDVFNILLQMLDDGRLTDSHGRT 155 (311)
T ss_dssp HHHHHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEECTTSCE
T ss_pred cHHHhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhc-------------CHHHHHHHHHHHhcCEEEcCCCCE
Confidence 00 001000 012233344455689999999998 445667776666532
Q ss_pred ----CeEEEEccChH---------------HHHh------hhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhh
Q 005179 423 ----ELQCIASTTQD---------------EHRT------QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAH 476 (710)
Q Consensus 423 ----~v~vI~att~~---------------~~~~------~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~ 476 (710)
+.++|++||.. +... .-.+++.|.+||. .+.+.+|+.+++..|++.++.++...
T Consensus 156 ~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~ 235 (311)
T 4fcw_A 156 VDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRAR 235 (311)
T ss_dssp EECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHH
T ss_pred EECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 45588888872 1111 1146899999996 78899999999999999977766432
Q ss_pred -----cCCCCCHHHHHHHHHH
Q 005179 477 -----HNCKFTLEAINAAVHL 492 (710)
Q Consensus 477 -----~~~~i~~~~l~~l~~l 492 (710)
..+.+++++++.++..
T Consensus 236 ~~~~~~~~~~~~~~~~~l~~~ 256 (311)
T 4fcw_A 236 LAEKRISLELTEAAKDFLAER 256 (311)
T ss_dssp HHTTTCEEEECHHHHHHHHHH
T ss_pred HHhCCcEEEeCHHHHHHHHHh
Confidence 2467899999988875
No 69
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=3.6e-13 Score=145.93 Aligned_cols=209 Identities=19% Similarity=0.159 Sum_probs=138.0
Q ss_pred CCcccCHHHHHHHHHHHHc----CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCcccc-CceEEEeehhhhh-h----
Q 005179 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL-SKRIMSLDMGLLM-A---- 359 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~----~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~-~~~v~~ld~~~l~-~---- 359 (710)
+.++|++++++.+...+.. ..+.+++|+||||||||++++.+++.+.......... +..++.+++.... .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999998877654 3456799999999999999999999874421000001 4567777755432 0
Q ss_pred ---------cc--ccCc-cHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhH-HHhhcccccCCCeEE
Q 005179 360 ---------GA--KERG-ELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI-SNLLKPSLGRGELQC 426 (710)
Q Consensus 360 ---------g~--~~~g-~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~-~~~L~~~l~~~~v~v 426 (710)
+. ...+ .....+..+...+...+ .||||||+|.+.... ..+. ...|.... .++.+
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~---------~~~~~l~~l~~~~--~~~~i 167 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR---------GGDIVLYQLLRSD--ANISV 167 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST---------TSHHHHHHHHTSS--SCEEE
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC---------CCceeHHHHhcCC--cceEE
Confidence 00 0011 11222344444443333 399999999995431 1223 33444333 67889
Q ss_pred EEccChHHHHhhhhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcch
Q 005179 427 IASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (710)
Q Consensus 427 I~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ 505 (710)
|++++..++. ..+++.+.+||. .|.+++|+.++..+|++..+... ..+..+++++++.++..+.++-+ .+..
T Consensus 168 I~~t~~~~~~--~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~G---~~r~ 240 (384)
T 2qby_B 168 IMISNDINVR--DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG--LIKGTYDDEILSYIAAISAKEHG---DARK 240 (384)
T ss_dssp EEECSSTTTT--TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT--SCTTSCCSHHHHHHHHHHHTTCC---CHHH
T ss_pred EEEECCCchH--hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh--cccCCcCHHHHHHHHHHHHhccC---CHHH
Confidence 9988876421 256899999984 89999999999999999876521 23467899999999988873322 3567
Q ss_pred HHHHHHHHHhhh
Q 005179 506 AIDLVDEAGSRA 517 (710)
Q Consensus 506 ai~ll~~a~~~~ 517 (710)
+++++..+...+
T Consensus 241 a~~~l~~a~~~a 252 (384)
T 2qby_B 241 AVNLLFRAAQLA 252 (384)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 788888876544
No 70
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.50 E-value=8e-14 Score=150.94 Aligned_cols=212 Identities=19% Similarity=0.201 Sum_probs=138.6
Q ss_pred CCcccCHHHHHHHHHHHHc----CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh------
Q 005179 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~----~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~------ 359 (710)
+.++|++++++.+...+.. ..+.+++|+||||||||++++.+++.+..... ....+..++.+++.....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARAS-SLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHH-HHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHh-ccCCCeEEEEEECCcCCCHHHHHH
Confidence 6799999999999988743 45678999999999999999999988743200 000134566666433110
Q ss_pred ------cc--ccCcc-HHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc----CCCeE
Q 005179 360 ------GA--KERGE-LEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQ 425 (710)
Q Consensus 360 ------g~--~~~g~-~e~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~----~~~v~ 425 (710)
+. ...|. ....+..++..+... .+.||||||+|.+.... ...+....+...+. ..++.
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~~~~~~~~~~~~ 169 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRINQELGDRVWVS 169 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHGGGCC-----CE
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhchhhcCCCceEE
Confidence 00 01121 333344555544433 37799999999995431 02233333333333 56788
Q ss_pred EEEccChHHHHhhhhccHHHHccc--cceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 005179 426 CIASTTQDEHRTQFEKDKALARRF--QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (710)
Q Consensus 426 vI~att~~~~~~~~~~d~aL~~Rf--~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p 503 (710)
+|++++..++. ..+++.+.+|| ..+.+++|+.++...|++..+... ..+..+++++++.++..+.+. ...|
T Consensus 170 ~I~~t~~~~~~--~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~ 242 (387)
T 2v1u_A 170 LVGITNSLGFV--ENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA--FNPGVLDPDVVPLCAALAARE---HGDA 242 (387)
T ss_dssp EEEECSCSTTS--SSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH--BCTTTBCSSHHHHHHHHHHSS---SCCH
T ss_pred EEEEECCCchH--hhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---ccCH
Confidence 99988876422 25689999999 479999999999999999877532 235678999999988887732 2235
Q ss_pred chHHHHHHHHHhhh
Q 005179 504 DKAIDLVDEAGSRA 517 (710)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (710)
..+++++..++..+
T Consensus 243 r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 243 RRALDLLRVAGEIA 256 (387)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67788888776443
No 71
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.50 E-value=3.5e-13 Score=144.17 Aligned_cols=204 Identities=20% Similarity=0.254 Sum_probs=121.3
Q ss_pred hcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhc----CCCcccc----------------
Q 005179 286 EELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA----EVPVFLL---------------- 345 (710)
Q Consensus 286 ~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~----~~p~~l~---------------- 345 (710)
+..|++++|++..++.+...+......++||+||||||||++|+++++.+... ..|....
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNV 99 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCE
T ss_pred CCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhcccc
Confidence 44677899999876665444444456789999999999999999999977321 1111000
Q ss_pred ---CceEEEeehh----hhhhccccCccHHHHHHHHHHH---------HHhcCCeEEEEccchhhhhCCCCCCCCCCChH
Q 005179 346 ---SKRIMSLDMG----LLMAGAKERGELEARVTTLISE---------IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGL 409 (710)
Q Consensus 346 ---~~~v~~ld~~----~l~~g~~~~g~~e~~l~~~~~~---------~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~ 409 (710)
...++.+..+ .+. |.. .+ ...+.. +....+.+|||||+|.+ ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~-g~~---~~----~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l-------------~~ 158 (350)
T 1g8p_A 100 IRKPTPVVDLPLGVSEDRVV-GAL---DI----ERAISKGEKAFEPGLLARANRGYLYIDECNLL-------------ED 158 (350)
T ss_dssp EEECCCEEEECTTCCHHHHH-CEE---CH----HHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-------------CH
T ss_pred ccCCCcccccCCCcchhhhe-eec---hh----hhhhcCCceeecCceeeecCCCEEEEeChhhC-------------CH
Confidence 0011111110 111 000 00 111110 11123679999999998 33
Q ss_pred hHHHhhcccccCC---------------CeEEEEccChHHHHhhhhccHHHHcccc-ceEecCC-CHHHHHHHHHHHHHH
Q 005179 410 DISNLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEP-SQEDAVRILLGLREK 472 (710)
Q Consensus 410 ~~~~~L~~~l~~~---------------~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~P-s~~~~~~IL~~l~~~ 472 (710)
+.++.|...++.+ .+++|+++|+.+ ..++++|.+||. .+.+++| +.+++..|++.....
T Consensus 159 ~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~----~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~ 234 (350)
T 1g8p_A 159 HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE----GDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTY 234 (350)
T ss_dssp HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS----CCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhc
Confidence 4556666555533 688899988643 257899999998 4999999 577777888763211
Q ss_pred -------------------------HHhhcCCCCCHHHHHHHHHHhhhhhcCCCCcchHHHHHHHHHhh
Q 005179 473 -------------------------YEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 473 -------------------------~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ai~ll~~a~~~ 516 (710)
.....++.+++++++.++.++.+.-.. .+..+..+++.|...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~--~~R~~~~ll~~a~~~ 301 (350)
T 1g8p_A 235 DADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSD--GLRGELTLLRSARAL 301 (350)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSC--SHHHHHHHHHHHHHH
T ss_pred ccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC--CccHHHHHHHHHHHH
Confidence 011235678888888887776553110 234556666655433
No 72
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.50 E-value=6.9e-14 Score=150.88 Aligned_cols=191 Identities=23% Similarity=0.294 Sum_probs=124.1
Q ss_pred cccCHHHHHHHHHHHHc---------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh
Q 005179 292 VIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (710)
Q Consensus 292 liGr~~~i~~l~~~L~~---------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~ 356 (710)
++|++..++.+...+.. ..+.++||+||||||||++|+++|+.+ +.+++.++++.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~~ 86 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADATT 86 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechHH
Confidence 79999999988877631 145789999999999999999999988 67888888877
Q ss_pred hhhccccCccH-HHHHHHHHHHH----HhcCCeEEEEccchhhhhCCCCCCCCCC-ChHhHHHhhcccccC---------
Q 005179 357 LMAGAKERGEL-EARVTTLISEI----QKSGDVILFIDEVHTLIGSGTVGRGNKG-TGLDISNLLKPSLGR--------- 421 (710)
Q Consensus 357 l~~g~~~~g~~-e~~l~~~~~~~----~~~~~~IL~IDEid~l~~~~~~~~~~~~-~~~~~~~~L~~~l~~--------- 421 (710)
+... .+.|.. ...+..++..+ ....++||||||+|.+.........+.. ....+++.|++.|+.
T Consensus 87 l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~ 165 (363)
T 3hws_A 87 LTEA-GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQG 165 (363)
T ss_dssp HTTC-HHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------
T ss_pred hccc-ccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCcc
Confidence 6521 122322 33445555443 3334679999999999654322110000 111267777777661
Q ss_pred --------------CCeEEEEccChHHHHh----------------------------------------hhhccHHHHc
Q 005179 422 --------------GELQCIASTTQDEHRT----------------------------------------QFEKDKALAR 447 (710)
Q Consensus 422 --------------~~v~vI~att~~~~~~----------------------------------------~~~~d~aL~~ 447 (710)
.++.+|++++...... ...+.|.|.+
T Consensus 166 ~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~ 245 (363)
T 3hws_A 166 GRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG 245 (363)
T ss_dssp --------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT
T ss_pred ccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc
Confidence 1223344433211111 0115799999
Q ss_pred ccc-ceEecCCCHHHHHHHHHH----HHHHHHhh-----cCCCCCHHHHHHHHHHh
Q 005179 448 RFQ-PVLISEPSQEDAVRILLG----LREKYEAH-----HNCKFTLEAINAAVHLS 493 (710)
Q Consensus 448 Rf~-~I~v~~Ps~~~~~~IL~~----l~~~~~~~-----~~~~i~~~~l~~l~~ls 493 (710)
||. .+.+.+|+.+++..|+.. +..++... ..+.+++++++.++..+
T Consensus 246 R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~ 301 (363)
T 3hws_A 246 RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 301 (363)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhh
Confidence 998 566889999999999986 66555432 23568999999998764
No 73
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=3.9e-13 Score=145.38 Aligned_cols=209 Identities=19% Similarity=0.240 Sum_probs=139.2
Q ss_pred CCCcccCHHHHHHHHHHHHc----CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh-----
Q 005179 289 IDPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA----- 359 (710)
Q Consensus 289 l~~liGr~~~i~~l~~~L~~----~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~----- 359 (710)
.+.++||+++++.+...+.. ..+.+++|+||+|||||++++.+++.+...... +..++.+++.....
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG----KFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS----SCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CceEEEEECCCCCCHHHHH
Confidence 36799999999999987763 456789999999999999999999987542100 34566666543210
Q ss_pred -------cc--ccCc-cHHHHHHHHHHHHHhcC-CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc---cCCCeE
Q 005179 360 -------GA--KERG-ELEARVTTLISEIQKSG-DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---GRGELQ 425 (710)
Q Consensus 360 -------g~--~~~g-~~e~~l~~~~~~~~~~~-~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l---~~~~v~ 425 (710)
+. ...+ .....+..+...+...+ +.||+|||++.+..... .+....|...+ ...++.
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~~~~~~~~~ 165 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINSEVNKSKIS 165 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHHSCCC--EE
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchhhcCCCeEE
Confidence 00 0111 23333455555555443 88999999999965421 12333333333 456788
Q ss_pred EEEccChHHHHhhhhccHHHHccc--cceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 005179 426 CIASTTQDEHRTQFEKDKALARRF--QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (710)
Q Consensus 426 vI~att~~~~~~~~~~d~aL~~Rf--~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~~r~~p 503 (710)
+|++++..++.. .+++.+.+|| ..|.+++++.++..+++...+... .....+++++++.++.++... ...|
T Consensus 166 ~I~~~~~~~~~~--~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~ 238 (386)
T 2qby_A 166 FIGITNDVKFVD--LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAARE---HGDA 238 (386)
T ss_dssp EEEEESCGGGGG--GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHHT---TCCH
T ss_pred EEEEECCCChHh--hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---cCCH
Confidence 888888765322 4678888999 479999999999999998866532 234678999999998887632 1235
Q ss_pred chHHHHHHHHHhhh
Q 005179 504 DKAIDLVDEAGSRA 517 (710)
Q Consensus 504 ~~ai~ll~~a~~~~ 517 (710)
..++++++.++..+
T Consensus 239 r~~~~ll~~a~~~a 252 (386)
T 2qby_A 239 RRALDLLRVSGEIA 252 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67788888776443
No 74
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.50 E-value=3.1e-14 Score=146.52 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=110.7
Q ss_pred CCCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh------
Q 005179 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~------ 359 (710)
+|+.++|++..+.++.+.+.. ....+++|+||||||||++|+++++.+... +.+++.++++.+..
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~~~~~~~~~ 76 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDSE 76 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGSCHHHHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCCChhHHHHH
Confidence 578899999999988876643 456789999999999999999999876322 34567777665421
Q ss_pred --ccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC-------------CCe
Q 005179 360 --GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR-------------GEL 424 (710)
Q Consensus 360 --g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~-------------~~v 424 (710)
|. ..|.+..........+....+.+|||||++.+ ..+.++.|...++. .++
T Consensus 77 l~g~-~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 142 (265)
T 2bjv_A 77 LFGH-EAGAFTGAQKRHPGRFERADGGTLFLDELATA-------------PMMVQEKLLRVIEYGELERVGGSQPLQVNV 142 (265)
T ss_dssp HHCC-C---------CCCCHHHHTTTSEEEEESGGGS-------------CHHHHHHHHHHHHHCEECCCCC--CEECCC
T ss_pred hcCC-cccccccccccccchhhhcCCcEEEEechHhc-------------CHHHHHHHHHHHHhCCeecCCCcccccCCe
Confidence 10 01111100000000112234579999999999 33455566555543 257
Q ss_pred EEEEccChHHHH--hhhhccHHHHccccceEecCCCH----HHHHHHHHHHHHHHHhhcCC----CCCHHHHHHHHHH
Q 005179 425 QCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHNC----KFTLEAINAAVHL 492 (710)
Q Consensus 425 ~vI~att~~~~~--~~~~~d~aL~~Rf~~I~v~~Ps~----~~~~~IL~~l~~~~~~~~~~----~i~~~~l~~l~~l 492 (710)
++|++|+.+... ..-.+.+.|.+||..+.+..|+. ++...+++.++.++....+. .+++++++.+..+
T Consensus 143 ~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~ 220 (265)
T 2bjv_A 143 RLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNY 220 (265)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS
T ss_pred EEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC
Confidence 889988874321 11235789999997655555554 45555666666555544443 6899998877643
No 75
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.48 E-value=5.9e-13 Score=144.26 Aligned_cols=211 Identities=23% Similarity=0.266 Sum_probs=128.0
Q ss_pred CcccCHHHHHHHHHHHH----c--------------------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCC
Q 005179 291 PVIGRETEIQRIIQILC----R--------------------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~----~--------------------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~ 340 (710)
.++|++..++.+...+. + ....++||+||||||||++|+++++.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 48999998888876652 1 135789999999999999999999988
Q ss_pred CccccCceEEEeehhhhhhccccCcc-HHHHHHHHHHH----HHhcCCeEEEEccchhhhhCCCCCC-CCCCChHhHHHh
Q 005179 341 PVFLLSKRIMSLDMGLLMAGAKERGE-LEARVTTLISE----IQKSGDVILFIDEVHTLIGSGTVGR-GNKGTGLDISNL 414 (710)
Q Consensus 341 p~~l~~~~v~~ld~~~l~~g~~~~g~-~e~~l~~~~~~----~~~~~~~IL~IDEid~l~~~~~~~~-~~~~~~~~~~~~ 414 (710)
+.+++.+++..+... .+.|. .+..+..++.. +....+.||||||+|.+...+.... ..+.....+++.
T Consensus 97 -----~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~ 170 (376)
T 1um8_A 97 -----DIPIAISDATSLTEA-GYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQA 170 (376)
T ss_dssp -----TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHH
T ss_pred -----CCCEEEecchhhhhc-CcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHH
Confidence 567777777665421 12221 12234444432 2234578999999999965421100 000112236777
Q ss_pred hcccccCC-----------------------CeEEEEccChHHHHh----------------------------------
Q 005179 415 LKPSLGRG-----------------------ELQCIASTTQDEHRT---------------------------------- 437 (710)
Q Consensus 415 L~~~l~~~-----------------------~v~vI~att~~~~~~---------------------------------- 437 (710)
|+.+++.+ ++.+|++++......
T Consensus 171 Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T 1um8_A 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHD 250 (376)
T ss_dssp HHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHH
T ss_pred HHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHH
Confidence 77766643 346677665311110
Q ss_pred --hhhccHHHHcccc-ceEecCCCHHHHHHHHH----HHHHHHHhh-----cCCCCCHHHHHHHHHHhhhhhcCCCCcch
Q 005179 438 --QFEKDKALARRFQ-PVLISEPSQEDAVRILL----GLREKYEAH-----HNCKFTLEAINAAVHLSARYISDRYLPDK 505 (710)
Q Consensus 438 --~~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~----~l~~~~~~~-----~~~~i~~~~l~~l~~ls~~~i~~r~~p~~ 505 (710)
...+.+.|.+||. .+.+++++.++...|+. .+..++... .++.+++++++.++..+... ..-...
T Consensus 251 l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~---~~~~R~ 327 (376)
T 1um8_A 251 LVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALER---KTGARG 327 (376)
T ss_dssp HHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHT---TCTGGG
T ss_pred HhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhccc---ccCcHH
Confidence 1235799999995 89999999999999997 354444322 24679999999998874321 111244
Q ss_pred HHHHHHHHHh
Q 005179 506 AIDLVDEAGS 515 (710)
Q Consensus 506 ai~ll~~a~~ 515 (710)
...+++.++.
T Consensus 328 L~~~le~~~~ 337 (376)
T 1um8_A 328 LRAIIEDFCL 337 (376)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5556665554
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.47 E-value=4.3e-14 Score=148.50 Aligned_cols=179 Identities=21% Similarity=0.314 Sum_probs=114.4
Q ss_pred CCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh--------h
Q 005179 290 DPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------A 359 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~--------~ 359 (710)
++++|++..+.++.+.+.+ ....++||+||||||||++|++++......+. +++.++++.+. .
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~-------~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDR-------PLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSS-------CCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCC-------CeEEEeCCCCChHHHHHHhc
Confidence 3589999999998887765 56788999999999999999999987643333 34444443321 1
Q ss_pred ccccCccHHHH---HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------C
Q 005179 360 GAKERGELEAR---VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------E 423 (710)
Q Consensus 360 g~~~~g~~e~~---l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~ 423 (710)
|. ..|.+... ....+.. ..+.+||||||+.+ ..+.+..|...++.+ +
T Consensus 75 g~-~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 75 GH-EKGAFTGADKRREGRFVE---ADGGTLFLDEIGDI-------------SPLMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp CC-CSSCCC---CCCCCHHHH---HTTSEEEEESCTTC-------------CHHHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred Cc-cccccCchhhhhcCHHHh---cCCCEEEEeccccC-------------CHHHHHHHHHHHhcCEeeecCCcccccCC
Confidence 11 11111000 1112222 23568999999999 344566666655543 4
Q ss_pred eEEEEccChHHHHh--hhhccHHHHccccceEecCCC----HHHHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHH
Q 005179 424 LQCIASTTQDEHRT--QFEKDKALARRFQPVLISEPS----QEDAVRILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (710)
Q Consensus 424 v~vI~att~~~~~~--~~~~d~aL~~Rf~~I~v~~Ps----~~~~~~IL~~l~~~~~~~~~---~~i~~~~l~~l~~l 492 (710)
+++|++||.+.... .-..++.|..||..+.+..|+ .++...+++.++.++...++ ..+++++++.+..+
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~ 215 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY 215 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC
Confidence 78999988753211 113568899999866665555 45566677777666654433 57899999887655
No 77
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.46 E-value=1.1e-12 Score=142.15 Aligned_cols=205 Identities=16% Similarity=0.173 Sum_probs=136.9
Q ss_pred CCcccCHHHHHHHHHHHHc----CCCC--CcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh----
Q 005179 290 DPVIGRETEIQRIIQILCR----RTKN--NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA---- 359 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~----~~~~--nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~---- 359 (710)
+.++||+++++++...+.. ..+. +++|+||||+|||++++.++..+.... +..++.+++.....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNFTAI 90 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCHHHH
Confidence 6799999999999888765 3334 799999999999999999999874321 34556665432210
Q ss_pred --------cc--ccCc-cHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC------
Q 005179 360 --------GA--KERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------ 421 (710)
Q Consensus 360 --------g~--~~~g-~~e~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------ 421 (710)
+. ...+ .....+..+...+.. ..+.||||||+|.+ ..+....|..++++
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-------------~~~~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-------------APDILSTFIRLGQEADKLGA 157 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-------------CHHHHHHHHHHTTCHHHHSS
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-------------chHHHHHHHHHHHhCCCCCc
Confidence 00 0011 222333333333333 34789999999998 23345555555532
Q ss_pred CCeEEEEccChHHHHhhhhccHHHHcccc--ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc-
Q 005179 422 GELQCIASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS- 498 (710)
Q Consensus 422 ~~v~vI~att~~~~~~~~~~d~aL~~Rf~--~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~i~- 498 (710)
.++.+|++++..++.. .+++.+.+||. .+.+++++.++..+++...+... .....+++++++.++..+.+...
T Consensus 158 ~~~~iI~~~~~~~~~~--~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG--LAEGSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp CCEEEEEEESSTHHHH--TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH--BCTTSSCHHHHHHHHHHHSBSSTT
T ss_pred CCEEEEEEECCchHHH--HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHHhhcccC
Confidence 5788888877664333 46788999997 69999999999999998876542 12347899999999988743311
Q ss_pred --CCCCcchHHHHHHHHHhhh
Q 005179 499 --DRYLPDKAIDLVDEAGSRA 517 (710)
Q Consensus 499 --~r~~p~~ai~ll~~a~~~~ 517 (710)
....+..+++++..++..+
T Consensus 234 ~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 234 DTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp CTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 0234667888888776543
No 78
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.46 E-value=1.3e-13 Score=156.26 Aligned_cols=176 Identities=19% Similarity=0.243 Sum_probs=112.2
Q ss_pred CcccCHHHHHHHHHHHHc------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcc---
Q 005179 291 PVIGRETEIQRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA--- 361 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~--- 361 (710)
+++|.++....+.+.+.. ..+.+++|+||||||||+++++++..+ +.....+++..+....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC--------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhhh
Confidence 478888877776554321 235578999999999999999999988 4445555443322110
Q ss_pred ----ccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC----------------
Q 005179 362 ----KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---------------- 421 (710)
Q Consensus 362 ----~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~---------------- 421 (710)
.+.|.....+...+..+.... .||||||+|.+.... ..+.++.|...++.
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~-~vl~lDEid~l~~~~---------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~ 221 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLN-PVFLLDEIDKMSSDF---------RGDPSSAMLEVLDPEQNSSFSDHYIEETFD 221 (543)
T ss_dssp ------------CHHHHHHTTCSSS-EEEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCB
T ss_pred hHHHHHhccCchHHHHHHHHhhccC-CEEEEhhhhhhhhhh---------ccCHHHHHHHHHhhhhcceeecccCCeeec
Confidence 223333333444444443333 499999999995431 11234555555532
Q ss_pred -CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHH-HHHHhhc-----CCCCCHHHHHHHHH
Q 005179 422 -GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLR-EKYEAHH-----NCKFTLEAINAAVH 491 (710)
Q Consensus 422 -~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~-~~~~~~~-----~~~i~~~~l~~l~~ 491 (710)
.++++|+|||... .++++|++||..|.++.|+.+++..|++..+ .++...+ ++.++++++..++.
T Consensus 222 ~~~v~iI~ttN~~~-----~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~ 293 (543)
T 3m6a_A 222 LSKVLFIATANNLA-----TIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIR 293 (543)
T ss_dssp CSSCEEEEECSSTT-----TSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHH
T ss_pred ccceEEEeccCccc-----cCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHH
Confidence 4578999999865 7899999999999999999999999998744 3333333 35678999888776
No 79
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.45 E-value=1.1e-12 Score=169.30 Aligned_cols=140 Identities=14% Similarity=0.185 Sum_probs=95.0
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHH-H---------
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI-Q--------- 379 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~-~--------- 379 (710)
.+.++||+||||||||++|+.+.... .+..++.++++..... ..+...++.. .
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts~--------~~~~~~i~~~~~~~~~~~g~~ 1328 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTTT--------EHILSALHRHTNYVTTSKGLT 1328 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCCH--------HHHHHHHHHHBCCEEETTTEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC---------CCCceEEEEeecCCCH--------HHHHHHHHHHhhhccccCCcc
Confidence 35789999999999999997665432 1455666665443321 1133333322 0
Q ss_pred -----hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--------------CeEEEEccChHHHHhhhh
Q 005179 380 -----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------------ELQCIASTTQDEHRTQFE 440 (710)
Q Consensus 380 -----~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~att~~~~~~~~~ 440 (710)
...+.||||||++..... ..+.....++|+++++.+ ++++|+|||++...+...
T Consensus 1329 ~~P~~~gk~~VlFiDEinmp~~d-------~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~ 1401 (2695)
T 4akg_A 1329 LLPKSDIKNLVLFCDEINLPKLD-------KYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIP 1401 (2695)
T ss_dssp EEEBSSSSCEEEEEETTTCSCCC-------SSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCC
T ss_pred ccCCCCCceEEEEeccccccccc-------ccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCcc
Confidence 123479999999864221 122344666777666532 478999999874234457
Q ss_pred ccHHHHccccceEecCCCHHHHHHHHHHHHHHH
Q 005179 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKY 473 (710)
Q Consensus 441 ~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~ 473 (710)
++++|.|||..|.++.|+.+++..|+..+...+
T Consensus 1402 l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1402 MSERFTRHAAILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp CCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHH
T ss_pred CChhhhheeeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999887654
No 80
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.44 E-value=3.5e-15 Score=176.40 Aligned_cols=168 Identities=20% Similarity=0.306 Sum_probs=125.9
Q ss_pred cCCCCcccCHHHHHHHHHHHHc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEee
Q 005179 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (710)
Q Consensus 287 ~~l~~liGr~~~i~~l~~~L~~-------------~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld 353 (710)
-.+++++|.++..+.+.+.+.. ..+.+++|+||||||||++|+++|..+ +..++.++
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v~ 543 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 543 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH----------TCCCCCCC
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 3577889988888887776532 245679999999999999999999988 45556666
Q ss_pred hhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCC-CCChHhHHHhhccccc----CCCeEEEE
Q 005179 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RGELQCIA 428 (710)
Q Consensus 354 ~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~-~~~~~~~~~~L~~~l~----~~~v~vI~ 428 (710)
++.+. .++.|+.+..+..+|+.+....++||||||+|.+........+. ......+.+.|+..|. ...+++|+
T Consensus 544 ~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~ 621 (806)
T 1ypw_A 544 GPELL--TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp CSSST--TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCC
T ss_pred chHhh--hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEE
Confidence 66655 45677777889999999988888999999999997653221100 0012334455555554 45688999
Q ss_pred ccChHHHHhhhhccHHHHc--ccc-ceEecCCCHHHHHHHHHHHHH
Q 005179 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLRE 471 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~~--Rf~-~I~v~~Ps~~~~~~IL~~l~~ 471 (710)
|||..+ .+|+++.+ ||+ .|.++.|+.+++..||+..++
T Consensus 622 tTN~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 622 ATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CCBSCG-----GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred ecCCcc-----cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 999876 68999999 997 899999999999999987654
No 81
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.35 E-value=5.3e-12 Score=137.60 Aligned_cols=105 Identities=27% Similarity=0.334 Sum_probs=71.5
Q ss_pred CeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC------------CCeEEEEcc-----ChHHHHhhhhccHHH
Q 005179 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIAST-----TQDEHRTQFEKDKAL 445 (710)
Q Consensus 383 ~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------~~v~vI~at-----t~~~~~~~~~~d~aL 445 (710)
..||++||+|.+...+.. .+.+-+..-+++.|++.++. .++.+|+++ ++. .+.|.|
T Consensus 251 ~~il~~DEidki~~~~~~-~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~------dlipel 323 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS------DLIPEL 323 (444)
T ss_dssp HCEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG------GSCHHH
T ss_pred CCeeeHHHHHHHhhccCC-CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh------hcchHH
Confidence 458999999999754321 11001111255677776653 356788776 443 355899
Q ss_pred Hcccc-ceEecCCCHHHHHHHHH----HHHHHHHhh-----cCCCCCHHHHHHHHHHhh
Q 005179 446 ARRFQ-PVLISEPSQEDAVRILL----GLREKYEAH-----HNCKFTLEAINAAVHLSA 494 (710)
Q Consensus 446 ~~Rf~-~I~v~~Ps~~~~~~IL~----~l~~~~~~~-----~~~~i~~~~l~~l~~ls~ 494 (710)
.+||. .|.++.++.++...|+. .+..+|... ..+.++++++..+++.+.
T Consensus 324 ~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~ 382 (444)
T 1g41_A 324 QGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 382 (444)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred hcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHH
Confidence 99998 48999999999999994 355555432 235799999999998754
No 82
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.33 E-value=5.8e-12 Score=150.56 Aligned_cols=182 Identities=20% Similarity=0.260 Sum_probs=125.9
Q ss_pred CCcccCHHHHHHHHHHHHcCC---------CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhc
Q 005179 290 DPVIGRETEIQRIIQILCRRT---------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~~~---------~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g 360 (710)
+.++|++..++.+...+.+.. ..++||+||||||||++|++|++.+... +..++.++++.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~-------~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS-------GGGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhccch
Confidence 357999999998888775421 1368999999999999999999988543 345666666554321
Q ss_pred c----------ccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--------
Q 005179 361 A----------KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (710)
Q Consensus 361 ~----------~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------- 422 (710)
. .+.|.-+ ...+...+....+.||||||++.+ ..++++.|.++++.+
T Consensus 631 ~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~l~~~~~~~~~g~ 695 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-------------HPDVFNILLQILDDGRLTDSHGR 695 (854)
T ss_dssp GGGGGC----------------CHHHHHHHCSSEEEEESSGGGS-------------CHHHHHHHHHHHTTTEECCSSSC
T ss_pred hHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-------------CHHHHHHHHHHhccCceECCCCC
Confidence 0 0111100 122333344556789999999988 567888898888765
Q ss_pred -----CeEEEEccChHH---------------HHhh------hhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHh
Q 005179 423 -----ELQCIASTTQDE---------------HRTQ------FEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA 475 (710)
Q Consensus 423 -----~v~vI~att~~~---------------~~~~------~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~ 475 (710)
++++|+|||... .... -...|.|.+||+ .+.+.+|+.+++..|++.++.++..
T Consensus 696 ~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 696 TVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp CEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred EeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 456888888621 1111 134688999995 7888889999999999988776653
Q ss_pred hc-----CCCCCHHHHHHHHHHh
Q 005179 476 HH-----NCKFTLEAINAAVHLS 493 (710)
Q Consensus 476 ~~-----~~~i~~~~l~~l~~ls 493 (710)
.. .+.+++++++.++..+
T Consensus 776 ~~~~~~~~~~~~~~a~~~L~~~~ 798 (854)
T 1qvr_A 776 RLAEKRISLELTEAAKDFLAERG 798 (854)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHH
T ss_pred HHHhCCceEEECHHHHHHHHHcC
Confidence 22 3578999999988763
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.32 E-value=1e-12 Score=122.30 Aligned_cols=135 Identities=16% Similarity=0.039 Sum_probs=88.2
Q ss_pred CcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHH
Q 005179 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e 368 (710)
.++|++..++++.+.+.+ ....+++|+||||||||++|+++++..... +..++ +++..+... ..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-------~~~~v-~~~~~~~~~----~~-- 67 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-------QGEFV-YRELTPDNA----PQ-- 67 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-------TSCCE-EEECCTTTS----SC--
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-------CCCEE-EECCCCCcc----hh--
Confidence 579999999998887654 566789999999999999999999865332 34455 666554432 11
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc--CCCeEEEEccChHHHH--hhhhccHH
Q 005179 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQDEHR--TQFEKDKA 444 (710)
Q Consensus 369 ~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~att~~~~~--~~~~~d~a 444 (710)
....+..+ .+.+|||||+|.+ ..+.+..|..++. ..++++|++||.+... ..-...+.
T Consensus 68 --~~~~~~~a---~~g~l~ldei~~l-------------~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~ 129 (145)
T 3n70_A 68 --LNDFIALA---QGGTLVLSHPEHL-------------TREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAE 129 (145)
T ss_dssp --HHHHHHHH---TTSCEEEECGGGS-------------CHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHH
T ss_pred --hhcHHHHc---CCcEEEEcChHHC-------------CHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHH
Confidence 23333333 3568999999999 3344555555544 3457888888865321 12235678
Q ss_pred HHccccceEecCC
Q 005179 445 LARRFQPVLISEP 457 (710)
Q Consensus 445 L~~Rf~~I~v~~P 457 (710)
|..||..+.+..|
T Consensus 130 L~~rl~~~~i~lP 142 (145)
T 3n70_A 130 LYYCFAMTQIACL 142 (145)
T ss_dssp HHHHHHHHEEECC
T ss_pred HHHHhcCCEEeCC
Confidence 8888874444444
No 84
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.29 E-value=5.9e-13 Score=123.65 Aligned_cols=131 Identities=15% Similarity=0.190 Sum_probs=86.7
Q ss_pred CcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHH
Q 005179 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e 368 (710)
+++|+++.++++.+.+.. ....+++|+||||||||++|++++... . +++.+++..+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----------~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----------T-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----------S-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----------C-CeEEechhhCChHh-------
Confidence 478999999888887654 566789999999999999999998755 2 56666665543211
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC---CCeEEEEccChHHHH-hhhhccHH
Q 005179 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---GELQCIASTTQDEHR-TQFEKDKA 444 (710)
Q Consensus 369 ~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~---~~v~vI~att~~~~~-~~~~~d~a 444 (710)
...++.. ..+.+|||||++.+ ..+.+..|...+++ .++++|++||.+... ..- .++.
T Consensus 67 --~~~~~~~---a~~~~l~lDei~~l-------------~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~-~~~~ 127 (143)
T 3co5_A 67 --PMELLQK---AEGGVLYVGDIAQY-------------SRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGIS-CEEK 127 (143)
T ss_dssp --HHHHHHH---TTTSEEEEEECTTC-------------CHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--C-HHHH
T ss_pred --hhhHHHh---CCCCeEEEeChHHC-------------CHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-ccHH
Confidence 2333332 33579999999999 34455666666653 458899988865311 111 5677
Q ss_pred HHccccceEecCCC
Q 005179 445 LARRFQPVLISEPS 458 (710)
Q Consensus 445 L~~Rf~~I~v~~Ps 458 (710)
|..||..+.+..|+
T Consensus 128 L~~rl~~~~i~lPp 141 (143)
T 3co5_A 128 LAGLFSESVVRIPP 141 (143)
T ss_dssp HHHHSSSEEEEECC
T ss_pred HHHHhcCcEEeCCC
Confidence 88888755554443
No 85
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.29 E-value=3.8e-11 Score=155.00 Aligned_cols=124 Identities=14% Similarity=0.210 Sum_probs=89.2
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEcc
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDE 390 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDE 390 (710)
..+.++.||+|||||++++.+|+.+ +..++.++++.-... ..+..++..+... +.++++||
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~l----------g~~~v~~nc~e~ld~--------~~lg~~~~g~~~~-Gaw~~~DE 705 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNL----------GRVVVVFNCDDSFDY--------QVLSRLLVGITQI-GAWGCFDE 705 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTT----------TCCCEEEETTSSCCH--------HHHHHHHHHHHHH-TCEEEEET
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHh----------CCcEEEEECCCCCCh--------hHhhHHHHHHHhc-CCEeeehh
Confidence 4568999999999999999999998 788888887653321 2245556555544 47999999
Q ss_pred chhhhhCCCCCCCCCCChHhHHHhh-------cccc--------c-------CCCeEEEEccChHHHHhhhhccHHHHcc
Q 005179 391 VHTLIGSGTVGRGNKGTGLDISNLL-------KPSL--------G-------RGELQCIASTTQDEHRTQFEKDKALARR 448 (710)
Q Consensus 391 id~l~~~~~~~~~~~~~~~~~~~~L-------~~~l--------~-------~~~v~vI~att~~~~~~~~~~d~aL~~R 448 (710)
++.+ ..++...+ ...+ . .....+++|+|+ .|....+++++|++|
T Consensus 706 ~nr~-------------~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP-gy~g~~eLP~~Lk~~ 771 (2695)
T 4akg_A 706 FNRL-------------DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP-GYNGRSELPENLKKS 771 (2695)
T ss_dssp TTSS-------------CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC-CSSSSCCCCHHHHTT
T ss_pred hhhc-------------ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC-CccCcccccHHHHhh
Confidence 9987 22232222 1111 1 134557788887 476677899999999
Q ss_pred ccceEecCCCHHHHHHHHH
Q 005179 449 FQPVLISEPSQEDAVRILL 467 (710)
Q Consensus 449 f~~I~v~~Ps~~~~~~IL~ 467 (710)
|..|.+..|+.+...+|+-
T Consensus 772 Fr~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 772 FREFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp EEEEECCCCCHHHHHHHHH
T ss_pred eEEEEeeCCCHHHHHHHHH
Confidence 9999999999988777753
No 86
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.27 E-value=2.5e-11 Score=129.15 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHcCCCCC-cEEEcCCCChHHHHHHHHHHHHHhcCCCcc--c------------cCceEEEeehhhhhh
Q 005179 295 RETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L------------LSKRIMSLDMGLLMA 359 (710)
Q Consensus 295 r~~~i~~l~~~L~~~~~~n-vLL~GppG~GKT~la~~la~~l~~~~~p~~--l------------~~~~v~~ld~~~l~~ 359 (710)
+++.++.+...+......+ +||+||+|+|||++|+.+++.+.+...... . ....++.++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~--- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK--- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---
Confidence 3556777787777766555 899999999999999999999865331110 0 001233333210
Q ss_pred ccccCccHHHHHHHHHHHHHh----cCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC--CCeEEEEccChH
Q 005179 360 GAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (710)
Q Consensus 360 g~~~~g~~e~~l~~~~~~~~~----~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~att~~ 433 (710)
+.... -...++.+++.+.. .+..|++|||+|.+ ..+.++.|...+++ .++++|.+|+..
T Consensus 84 ~~~~~--~i~~ir~l~~~~~~~~~~~~~kvviIdead~l-------------~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 84 GKNTL--GVDAVREVTEKLNEHARLGGAKVVWVTDAALL-------------TDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp TCSSB--CHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-------------CHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred cCCCC--CHHHHHHHHHHHhhccccCCcEEEEECchhhc-------------CHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 00111 12335666666543 34689999999999 44567778888875 357777777765
Q ss_pred HHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q 005179 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (710)
Q Consensus 434 ~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~~ 496 (710)
+ .+.+++++|++.+.+++|+.++..++|+... .+++++++.++.++.+.
T Consensus 149 ~-----~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G~ 197 (334)
T 1a5t_A 149 E-----RLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------TMSQDALLAALRLSAGS 197 (334)
T ss_dssp G-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTC
T ss_pred H-----hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCCC
Confidence 4 6789999999999999999999888776432 67889988888887553
No 87
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.26 E-value=6.2e-11 Score=136.22 Aligned_cols=219 Identities=22% Similarity=0.277 Sum_probs=131.2
Q ss_pred HhhhhcCCCCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccc--------cCceEEEee
Q 005179 282 ARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL--------LSKRIMSLD 353 (710)
Q Consensus 282 ~~~~~~~l~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l--------~~~~v~~ld 353 (710)
.++++..|+.++|++..++.+...+.. +.+++|+||||||||+++++|+..+......... ....+..+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p 110 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVP 110 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEE
T ss_pred ccccccccceEECchhhHhhccccccC--CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEe
Confidence 355677788899999999888877765 3689999999999999999999876322100000 000000000
Q ss_pred hhh---------------------------------hh------hccccCccHHHHHHHHHH------------------
Q 005179 354 MGL---------------------------------LM------AGAKERGELEARVTTLIS------------------ 376 (710)
Q Consensus 354 ~~~---------------------------------l~------~g~~~~g~~e~~l~~~~~------------------ 376 (710)
... +. .+.............++.
T Consensus 111 ~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~ 190 (604)
T 3k1j_A 111 ACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHE 190 (604)
T ss_dssp TTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGG
T ss_pred cchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccc
Confidence 000 00 000000000000011110
Q ss_pred -----HHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-----------------------CeEEEE
Q 005179 377 -----EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------------------ELQCIA 428 (710)
Q Consensus 377 -----~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~vI~ 428 (710)
.+....+.+|||||++.+ ...+++.|+..|+++ ++++|+
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~l-------------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~ 257 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIATL-------------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVA 257 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGGS-------------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEE
T ss_pred cccCceeeecCCCEEEEechhhC-------------CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEE
Confidence 112234679999999998 345666666655522 467999
Q ss_pred ccChHHHHhhhhccHHHHccccc--eEecCC-----CHHHHHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHhhhhhcCC
Q 005179 429 STTQDEHRTQFEKDKALARRFQP--VLISEP-----SQEDAVRILLGLREKYEAH-HNCKFTLEAINAAVHLSARYISDR 500 (710)
Q Consensus 429 att~~~~~~~~~~d~aL~~Rf~~--I~v~~P-----s~~~~~~IL~~l~~~~~~~-~~~~i~~~~l~~l~~ls~~~i~~r 500 (710)
+||++.. ..++++|.+||.. +.++.+ ..+....+++.+...+... ....++++++..++..+.++-..+
T Consensus 258 atn~~~~---~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r 334 (604)
T 3k1j_A 258 AGNLDTV---DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRK 334 (604)
T ss_dssp EECHHHH---HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCST
T ss_pred ecCHHHH---hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccc
Confidence 9998742 2589999999962 334322 3555666666655554432 335799999999999887776655
Q ss_pred C----CcchHHHHHHHHHhhhh
Q 005179 501 Y----LPDKAIDLVDEAGSRAH 518 (710)
Q Consensus 501 ~----~p~~ai~ll~~a~~~~~ 518 (710)
. .+..+.+++..|...+.
T Consensus 335 ~~l~~~~R~l~~llr~A~~~A~ 356 (604)
T 3k1j_A 335 GHLTLRLRDLGGIVRAAGDIAV 356 (604)
T ss_dssp TEEECCHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHH
Confidence 4 45677778887765443
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.21 E-value=2.9e-10 Score=124.11 Aligned_cols=214 Identities=14% Similarity=0.115 Sum_probs=130.5
Q ss_pred CCcccCHHHHHHHHHHH-Hc------CCCCCcEE--EcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhh---
Q 005179 290 DPVIGRETEIQRIIQIL-CR------RTKNNPIL--LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL--- 357 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L-~~------~~~~nvLL--~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l--- 357 (710)
+.++||+++++.+...+ .. ..+.+++| +||+|+|||++++.+++.+.... +....+..++.+++...
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA-AKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHH-HHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHH-hccCCceeEEEEECCCCCCH
Confidence 56999999999998887 42 24567888 99999999999999998874310 00001234555553211
Q ss_pred ---h----h--ccc--cCc-cHHHHHHHHHHHHH-hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc---c-
Q 005179 358 ---M----A--GAK--ERG-ELEARVTTLISEIQ-KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---G- 420 (710)
Q Consensus 358 ---~----~--g~~--~~g-~~e~~l~~~~~~~~-~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l---~- 420 (710)
. . +.. ..+ .....+..+...+. ...+.||+|||+|.+..... ...+....|...+ .
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-------~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-------IAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-------SCHHHHHHHHTHHHHSCC
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-------cchHHHHHHHHHHHhccc
Confidence 0 0 110 011 12222333333333 24578999999999953210 0122333222222 2
Q ss_pred -C--CCeEEEEccChHHHHhhhhcc---HHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Q 005179 421 -R--GELQCIASTTQDEHRTQFEKD---KALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (710)
Q Consensus 421 -~--~~v~vI~att~~~~~~~~~~d---~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls 493 (710)
. .++.+|++++..++.. .++ +.+.++|. .+.+++++.++..+++....... ..+..+++++++.++..+
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~--~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~--~~~~~~~~~~~~~i~~~~ 249 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALS--YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELG--LRDTVWEPRHLELISDVY 249 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHH--HHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH--BCTTSCCHHHHHHHHHHH
T ss_pred CCCCceEEEEEEeccccHHH--HHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc--CCCCCCChHHHHHHHHHH
Confidence 3 5778888876554322 234 66777775 59999999999999998765533 223468899999998888
Q ss_pred hhhhcCCCCcchHHHHHHHHHh
Q 005179 494 ARYISDRYLPDKAIDLVDEAGS 515 (710)
Q Consensus 494 ~~~i~~r~~p~~ai~ll~~a~~ 515 (710)
.+..+....|..+..++..++.
T Consensus 250 ~~~~~~~G~p~~~~~l~~~a~~ 271 (412)
T 1w5s_A 250 GEDKGGDGSARRAIVALKMACE 271 (412)
T ss_dssp CGGGTSCCCHHHHHHHHHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHHHH
Confidence 7443222456777788776654
No 89
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.21 E-value=2.7e-11 Score=127.29 Aligned_cols=86 Identities=52% Similarity=0.795 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeC
Q 005179 615 DERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFF 694 (710)
Q Consensus 615 ~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d 694 (710)
++...+.++++.|.+.++||+++++.+...+...+.|+..|.+|.+.+||+||||||||++|++||+.++.....++.+|
T Consensus 3 ~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 3 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp HHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred cHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred CCCCCC
Q 005179 695 PSPFNS 700 (710)
Q Consensus 695 ~se~~~ 700 (710)
++++..
T Consensus 83 ~~~~~~ 88 (311)
T 4fcw_A 83 MTEYME 88 (311)
T ss_dssp GGGCCS
T ss_pred cccccc
Confidence 998754
No 90
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.20 E-value=3.4e-11 Score=134.03 Aligned_cols=208 Identities=13% Similarity=0.096 Sum_probs=120.2
Q ss_pred CcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHH
Q 005179 291 PVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~ 370 (710)
.++|+++.++.+...+.. +.|+||+||||||||++|++++..+.. ..|.....+.+ ...+.+. |. ..+....
T Consensus 23 ~ivGq~~~i~~l~~al~~--~~~VLL~GpPGtGKT~LAraLa~~l~~-~~~f~~~~~~~--~t~~dL~-G~-~~~~~~~- 94 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQN-ARAFEYLMTRF--STPEEVF-GP-LSIQALK- 94 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--TCEEEEECCSSSSHHHHHHHGGGGBSS-CCEEEEECCTT--CCHHHHH-CC-BC------
T ss_pred hhHHHHHHHHHHHHHHhc--CCeeEeecCchHHHHHHHHHHHHHHhh-hhHHHHHHHhc--CCHHHhc-Cc-ccHHHHh-
Confidence 489999999988877665 468999999999999999999987621 11111101110 0112222 11 0000000
Q ss_pred HHHHHHHHHhc---CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCC------------eEEEEccChHHH
Q 005179 371 VTTLISEIQKS---GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------LQCIASTTQDEH 435 (710)
Q Consensus 371 l~~~~~~~~~~---~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~------------v~vI~att~~~~ 435 (710)
-...+..+... .+.|||||||+.+ ....++.|...|+++. ..+|++||+.+
T Consensus 95 ~~g~~~~~~~g~l~~~~IL~IDEI~r~-------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lp- 160 (500)
T 3nbx_X 95 DEGRYERLTSGYLPEAEIVFLDEIWKA-------------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELP- 160 (500)
T ss_dssp -----CBCCTTSGGGCSEEEEESGGGC-------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCC-
T ss_pred hchhHHhhhccCCCcceeeeHHhHhhh-------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCC-
Confidence 00111111111 2458999999887 4456677776665432 13466666422
Q ss_pred HhhhhccHHHHcccc-ceEecCCCH-HHHHHHHHHHH-------------------HHHHhhcCCCCCHHHHHHHHHHhh
Q 005179 436 RTQFEKDKALARRFQ-PVLISEPSQ-EDAVRILLGLR-------------------EKYEAHHNCKFTLEAINAAVHLSA 494 (710)
Q Consensus 436 ~~~~~~d~aL~~Rf~-~I~v~~Ps~-~~~~~IL~~l~-------------------~~~~~~~~~~i~~~~l~~l~~ls~ 494 (710)
......+++.+||. .|.+++|+. +++..|+.... .......++.++++++++++.+..
T Consensus 161 -e~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~ 239 (500)
T 3nbx_X 161 -EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQ 239 (500)
T ss_dssp -CTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHH
T ss_pred -CccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHH
Confidence 11123479999997 688999986 67788886432 111123468899999999988874
Q ss_pred hhhc----CCCCcchHHHHHHHHHhhhhhhh
Q 005179 495 RYIS----DRYLPDKAIDLVDEAGSRAHIEL 521 (710)
Q Consensus 495 ~~i~----~r~~p~~ai~ll~~a~~~~~~~~ 521 (710)
..-. ....+...+.++..|.+.+.+..
T Consensus 240 ~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 240 QLDKLPDAPYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp HHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 3111 12234566667776666655543
No 91
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.16 E-value=1.4e-10 Score=150.46 Aligned_cols=157 Identities=13% Similarity=0.172 Sum_probs=98.8
Q ss_pred cccCHHHHH--HHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHH
Q 005179 292 VIGRETEIQ--RIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEA 369 (710)
Q Consensus 292 liGr~~~i~--~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~ 369 (710)
+|.--+.++ .++..+.. .+.++||+||||||||+++..+...+ .+..++.++++.-... .
T Consensus 1284 lVPT~DTvR~~~ll~~ll~-~~~pvLL~GptGtGKT~li~~~L~~l---------~~~~~~~infS~~Tta--------~ 1345 (3245)
T 3vkg_A 1284 VIPTVDTTRHVDVLHAWLS-EHRPLILCGPPGSGKTMTLTSTLRAF---------PDFEVVSLNFSSATTP--------E 1345 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHHH-TTCCCEEESSTTSSHHHHHHHHGGGC---------TTEEEEEECCCTTCCH--------H
T ss_pred eecchHHHHHHHHHHHHHH-CCCcEEEECCCCCCHHHHHHHHHHhC---------CCCceEEEEeeCCCCH--------H
Confidence 444444443 23333332 46789999999999998876654333 1345566665443311 1
Q ss_pred HHHHHHHH-H---H------------hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccC------------
Q 005179 370 RVTTLISE-I---Q------------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------ 421 (710)
Q Consensus 370 ~l~~~~~~-~---~------------~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~------------ 421 (710)
.+...++. + . .++..|+||||++.-... ..+......+|+++++.
T Consensus 1346 ~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D-------~yGtQ~~ielLrqlld~~g~yd~~~~~~~ 1418 (3245)
T 3vkg_A 1346 LLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTD-------KYGTQRVITFIRQMVEKGGFWRTSDHTWI 1418 (3245)
T ss_dssp HHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCC-------TTSCCHHHHHHHHHHHHSEEEETTTTEEE
T ss_pred HHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCcc-------ccccccHHHHHHHHHHcCCeEECCCCeEE
Confidence 12222221 0 0 022369999999864211 12344566777666652
Q ss_pred --CCeEEEEccChHHHHhhhhccHHHHccccceEecCCCHHHHHHHHHHHHHHH
Q 005179 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKY 473 (710)
Q Consensus 422 --~~v~vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~Ps~~~~~~IL~~l~~~~ 473 (710)
.++++|+|++++...+...++++|.|||..+.++.|+.++...|+..+...+
T Consensus 1419 ~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1419 KLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp EESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHH
T ss_pred EecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2467899998864334457899999999999999999999999988776544
No 92
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=2.7e-10 Score=119.22 Aligned_cols=146 Identities=10% Similarity=0.089 Sum_probs=102.5
Q ss_pred cCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHH
Q 005179 294 GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373 (710)
Q Consensus 294 Gr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~ 373 (710)
|+++.+..+...+..+...+.||+||||+|||++++++++.+.. ... ....++.++... ...+ ...++.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~--~~~--~~~d~~~l~~~~-----~~~~--id~ir~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEK--FPP--KASDVLEIDPEG-----ENIG--IDDIRT 69 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHT--SCC--CTTTEEEECCSS-----SCBC--HHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCch--hhc--cCCCEEEEcCCc-----CCCC--HHHHHH
Confidence 56778888888888766667899999999999999999986421 100 123445554321 1111 233566
Q ss_pred HHHHHHhc----CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--CeEEEEccChHHHHhhhhccHHHHc
Q 005179 374 LISEIQKS----GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALAR 447 (710)
Q Consensus 374 ~~~~~~~~----~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~att~~~~~~~~~~d~aL~~ 447 (710)
+++.+... +..|+||||+|.+ ..+.++.|+..+++. ..++|.+|+... .+.+++.+
T Consensus 70 li~~~~~~p~~~~~kvviIdead~l-------------t~~a~naLLk~LEep~~~t~fIl~t~~~~-----kl~~tI~S 131 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCERM-------------TQQAANAFLKALEEPPEYAVIVLNTRRWH-----YLLPTIKS 131 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGGB-------------CHHHHHHTHHHHHSCCTTEEEEEEESCGG-----GSCHHHHT
T ss_pred HHHHHhhccccCCceEEEeccHHHh-------------CHHHHHHHHHHHhCCCCCeEEEEEECChH-----hChHHHHc
Confidence 77766532 3579999999999 455688898999863 677777776643 67899999
Q ss_pred cccceEecCCCHHHHHHHHHHHH
Q 005179 448 RFQPVLISEPSQEDAVRILLGLR 470 (710)
Q Consensus 448 Rf~~I~v~~Ps~~~~~~IL~~l~ 470 (710)
| .+.+.+|+.++..+.|+...
T Consensus 132 R--~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 132 R--VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp T--SEEEECCCCHHHHHHHHHHH
T ss_pred e--eEeCCCCCHHHHHHHHHHHh
Confidence 9 89999999999888887654
No 93
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.07 E-value=9e-12 Score=142.29 Aligned_cols=203 Identities=10% Similarity=0.127 Sum_probs=114.6
Q ss_pred CCcccCHHHHHHHHHHHHcCC-----------CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCcc--ccCceEEEeehhh
Q 005179 290 DPVIGRETEIQRIIQILCRRT-----------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF--LLSKRIMSLDMGL 356 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~~~-----------~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~--l~~~~v~~ld~~~ 356 (710)
..++|++...+.+...+.... ..|+||+||||||||++|+++++.+.....+.. .....+.......
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~ 374 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVRE 374 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSG
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeec
Confidence 458999986666654444331 128999999999999999999987632221110 0001111111111
Q ss_pred hhhccccCccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC--------------
Q 005179 357 LMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------- 422 (710)
Q Consensus 357 l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------- 422 (710)
... |.+.... ..+. ...+.||||||++.+ ..+.++.|.+.|+++
T Consensus 375 ~~~-----g~~~~~~-G~l~---~A~~gil~IDEid~l-------------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~ 432 (595)
T 3f9v_A 375 KGT-----GEYYLEA-GALV---LADGGIAVIDEIDKM-------------RDEDRVAIHEAMEQQTVSIAKAGIVAKLN 432 (595)
T ss_dssp GGT-----SSCSEEE-CHHH---HHSSSEECCTTTTCC-------------CSHHHHHHHHHHHSSSEEEESSSSEEEEC
T ss_pred ccc-----ccccccC-CeeE---ecCCCcEEeehhhhC-------------CHhHhhhhHHHHhCCEEEEecCCcEEEec
Confidence 111 1110000 0111 123579999999998 334556666666543
Q ss_pred -CeEEEEccChHH--HHh------hhhccHHHHcccc--ceEecCCCHHHHHHHHHHHHHHHHh-hcCCCCCHHHHHHHH
Q 005179 423 -ELQCIASTTQDE--HRT------QFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEA-HHNCKFTLEAINAAV 490 (710)
Q Consensus 423 -~v~vI~att~~~--~~~------~~~~d~aL~~Rf~--~I~v~~Ps~~~~~~IL~~l~~~~~~-~~~~~i~~~~l~~l~ 490 (710)
++.+|+|+|+.. |.. .+.++++|.+||+ .+..+.|+.+ ...|++++...... .....++.+.+...+
T Consensus 433 ~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i 511 (595)
T 3f9v_A 433 ARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYI 511 (595)
T ss_dssp CCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHH
T ss_pred CceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence 356899999863 111 1278899999996 3444556666 67777666543211 112345666677777
Q ss_pred HHhhhhhcCCCCcchHHHHHHHHHhh
Q 005179 491 HLSARYISDRYLPDKAIDLVDEAGSR 516 (710)
Q Consensus 491 ~ls~~~i~~r~~p~~ai~ll~~a~~~ 516 (710)
.++..++.. .+++.+.+.+......
T Consensus 512 ~~ar~~~~p-~ls~ea~~~l~~~y~~ 536 (595)
T 3f9v_A 512 AYARKYVTP-KITSEAKNLITDFFVE 536 (595)
T ss_dssp HHHHHHHCC-CCCCCTHHHHHHHHTT
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHH
Confidence 776665443 3456677777666543
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.07 E-value=1.9e-09 Score=114.70 Aligned_cols=183 Identities=19% Similarity=0.182 Sum_probs=112.7
Q ss_pred CCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh-----------
Q 005179 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM----------- 358 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~----------- 358 (710)
+.++||+++++.+.+.+... ..++|+||+|+|||++++.+++.. + ++.+++....
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----------P--GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----------S--EEEEEHHHHHHTTTCBCHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----------C--cEEEEeecccccccCCCHHHH
Confidence 45899999999999988763 689999999999999999998764 1 3333332210
Q ss_pred -----h-------------------cccc---CccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhH
Q 005179 359 -----A-------------------GAKE---RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI 411 (710)
Q Consensus 359 -----~-------------------g~~~---~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~ 411 (710)
. +... ...+...+..+...+...++.+|+|||+|.+..... ....++
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~------~~~~~~ 151 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS------RGGKEL 151 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT------TTTHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc------cchhhH
Confidence 0 0000 112333333332222323489999999999943100 012344
Q ss_pred HHhhcccccC-CCeEEEEccChHHH-Hhh---hhccHHHHcccc-ceEecCCCHHHHHHHHHHHHHHHHhhcCCCCCHHH
Q 005179 412 SNLLKPSLGR-GELQCIASTTQDEH-RTQ---FEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA 485 (710)
Q Consensus 412 ~~~L~~~l~~-~~v~vI~att~~~~-~~~---~~~d~aL~~Rf~-~I~v~~Ps~~~~~~IL~~l~~~~~~~~~~~i~~~~ 485 (710)
...|...+.. .++.+|.+++...+ ... ......+..|+. .+.+.+.+.++..+++..... ..+..++++.
T Consensus 152 ~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~----~~~~~~~~~~ 227 (350)
T 2qen_A 152 LALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR----EVNLDVPENE 227 (350)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHH
T ss_pred HHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHH
Confidence 5555544432 46777776665432 121 122223444553 799999999998888875443 3456788888
Q ss_pred HHHHHHHhhhh
Q 005179 486 INAAVHLSARY 496 (710)
Q Consensus 486 l~~l~~ls~~~ 496 (710)
+..++..+.++
T Consensus 228 ~~~i~~~tgG~ 238 (350)
T 2qen_A 228 IEEAVELLDGI 238 (350)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 88888887764
No 95
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.03 E-value=2.7e-08 Score=129.47 Aligned_cols=123 Identities=13% Similarity=0.183 Sum_probs=87.7
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccc
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEi 391 (710)
.+..+.||+|||||.+++.+|+.+ +..++.++++.-+.. ..+..++..+.+. +.+.++||+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~l----------gr~~~vfnC~~~~d~--------~~~g~i~~G~~~~-GaW~cfDEf 665 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQL----------GRFVLVFCCDEGFDL--------QAMSRIFVGLCQC-GAWGCFDEF 665 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEECSSCCCH--------HHHHHHHHHHHHH-TCEEEEETT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHh----------CCeEEEEeCCCCCCH--------HHHHHHHhhHhhc-CcEEEehhh
Confidence 345799999999999999999999 778888877543311 2245555555544 578999999
Q ss_pred hhhhhCCCCCCCCCCChHhHHHhhcc----------------ccc-------CCCeEEEEccChHHHHhhhhccHHHHcc
Q 005179 392 HTLIGSGTVGRGNKGTGLDISNLLKP----------------SLG-------RGELQCIASTTQDEHRTQFEKDKALARR 448 (710)
Q Consensus 392 d~l~~~~~~~~~~~~~~~~~~~~L~~----------------~l~-------~~~v~vI~att~~~~~~~~~~d~aL~~R 448 (710)
+++ ..++...+.+ .+. +....++.|+|+ .|.+..+++..|..|
T Consensus 666 Nrl-------------~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~eLP~nLk~l 731 (3245)
T 3vkg_A 666 NRL-------------EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRSNLPDNLKKL 731 (3245)
T ss_dssp TSS-------------CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCCCSCHHHHTT
T ss_pred hcC-------------CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCcccChHHHHhh
Confidence 988 2222222111 011 124567888887 677777899999999
Q ss_pred ccceEecCCCHHHHHHHHH
Q 005179 449 FQPVLISEPSQEDAVRILL 467 (710)
Q Consensus 449 f~~I~v~~Ps~~~~~~IL~ 467 (710)
|..|.+..|+.+...+|+-
T Consensus 732 Fr~v~m~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 732 FRSMAMIKPDREMIAQVML 750 (3245)
T ss_dssp EEEEECCSCCHHHHHHHHH
T ss_pred cEEEEEeCCCHHHHHHHHH
Confidence 9999999999998777753
No 96
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.99 E-value=2.5e-10 Score=122.45 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=49.0
Q ss_pred ccChHHHHHHHHHHH--------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i--------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
|+|++++++.|..+| .+.+.|+..| .|+|||||||||||++|||||.++ +..++.++.|++.+
T Consensus 150 IgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~p----rGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQP----KGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQ 220 (405)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCC----CCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSC
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhc
Confidence 666666666666555 3446687665 799999999999999999999994 45899999887743
No 97
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.95 E-value=6.3e-10 Score=121.18 Aligned_cols=63 Identities=32% Similarity=0.424 Sum_probs=49.4
Q ss_pred ccChHHHHHHHHHHH--------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i--------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
|+|++++++.|...+ .+.+.|+..| .|+|||||||||||++|+|||.++ +..++.++.|++.+
T Consensus 183 igGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~p----rGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 183 IGGLTEQIRELREVIELPLKNPEIFQRVGIKPP----KGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVD 253 (437)
T ss_dssp GCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCC
T ss_pred hCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhcc
Confidence 677777776666655 3446677655 799999999999999999999995 45788998887743
No 98
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.94 E-value=6.8e-10 Score=119.37 Aligned_cols=63 Identities=25% Similarity=0.397 Sum_probs=50.0
Q ss_pred ccChHHHHHHHHHHHH--------HhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 631 VIGQDEAVAAISRAVK--------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~--------~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
|+|++++++.|.+.+. +.+.|+..| .|+|||||||||||++|+|||.++ ...++.++.|++.+
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~p----rGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPP----KGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQ 254 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCC----SEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCC
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhh
Confidence 7777777777776663 345677655 799999999999999999999994 45789999887743
No 99
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.93 E-value=6.5e-10 Score=120.95 Aligned_cols=63 Identities=29% Similarity=0.424 Sum_probs=49.6
Q ss_pred ccChHHHHHHHHHHH--------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i--------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
|+|.+++++.|...+ .+.+.|+..| .|+|||||||||||++|+|||.++ +..++.++.|++.+
T Consensus 183 igGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~p----rGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 183 VGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP----KGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQ 253 (434)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCS
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhh
Confidence 677777777766554 3456677655 799999999999999999999994 45788998887743
No 100
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.93 E-value=8e-10 Score=120.14 Aligned_cols=63 Identities=32% Similarity=0.423 Sum_probs=50.4
Q ss_pred ccChHHHHHHHHHHHH--------HhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 631 VIGQDEAVAAISRAVK--------RSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~--------~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
|+|++++++.|...+. +.+.|+..| .|+|||||||||||++|+|||+++ +..++.++++++.+
T Consensus 174 igGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~p----rGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 174 VGGLDMQKQEIREAVELPLVQADLYEQIGIDPP----RGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVH 244 (428)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----CEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCC
T ss_pred hccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----ceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhc
Confidence 7777777777776653 445687655 699999999999999999999995 45899999888643
No 101
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.91 E-value=7.4e-10 Score=120.24 Aligned_cols=63 Identities=24% Similarity=0.379 Sum_probs=49.3
Q ss_pred ccChHHHHHHHHHHH--------HHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 631 VIGQDEAVAAISRAV--------KRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i--------~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
|+|++++++.|.+.| .+.+.|+..| .|+|||||||||||++|+|||.++ ...++.++.+++.+
T Consensus 211 IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pp----rGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 211 VGGCKDQIEKLREVVELPLLSPERFATLGIDPP----KGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQ 281 (467)
T ss_dssp CTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCC----SEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCC
T ss_pred hccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCC----CceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhc
Confidence 666667666666554 3456687655 799999999999999999999995 45789998888744
No 102
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.90 E-value=4.5e-09 Score=111.92 Aligned_cols=177 Identities=18% Similarity=0.207 Sum_probs=102.8
Q ss_pred CCcccCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh-----------
Q 005179 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM----------- 358 (710)
Q Consensus 290 ~~liGr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~----------- 358 (710)
+.++||+++++.+.. +.. ..++|+||+|+|||++++.+++.+. ...+.+++....
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN----------LPYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT----------CCEEEEEGGGGTTCSCCCHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC----------CCEEEEEchhhccccCCCHHHHH
Confidence 458999999999998 655 5889999999999999999998762 123334432210
Q ss_pred ---------------------h---ccccCc---c------HHHHHHHHHHHHHhc--CCeEEEEccchhhhhCCCCCCC
Q 005179 359 ---------------------A---GAKERG---E------LEARVTTLISEIQKS--GDVILFIDEVHTLIGSGTVGRG 403 (710)
Q Consensus 359 ---------------------~---g~~~~g---~------~e~~l~~~~~~~~~~--~~~IL~IDEid~l~~~~~~~~~ 403 (710)
. +....+ . ....+..+++.+... ++.+|+|||+|.+....
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~----- 153 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR----- 153 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-----
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-----
Confidence 0 000000 0 001133444444432 48899999999995420
Q ss_pred CCCChHhHHHhhcccccC-CCeEEEEccChHHH-Hhh---hhccHHHHccc-cceEecCCCHHHHHHHHHHHHHHHHhhc
Q 005179 404 NKGTGLDISNLLKPSLGR-GELQCIASTTQDEH-RTQ---FEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHH 477 (710)
Q Consensus 404 ~~~~~~~~~~~L~~~l~~-~~v~vI~att~~~~-~~~---~~~d~aL~~Rf-~~I~v~~Ps~~~~~~IL~~l~~~~~~~~ 477 (710)
..++...|..+... .++.+|.+++.... ... ......+..|+ ..+.+.+++.++..+++.......
T Consensus 154 ----~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~---- 225 (357)
T 2fna_A 154 ----GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA---- 225 (357)
T ss_dssp ----TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHH----
T ss_pred ----chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHc----
Confidence 11223333333322 35667776665431 221 11222344465 479999999999999888755422
Q ss_pred CCCCCHHHHHHHHHHhhh
Q 005179 478 NCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 478 ~~~i~~~~l~~l~~ls~~ 495 (710)
+...++. ..++..+.+
T Consensus 226 ~~~~~~~--~~i~~~t~G 241 (357)
T 2fna_A 226 DIDFKDY--EVVYEKIGG 241 (357)
T ss_dssp TCCCCCH--HHHHHHHCS
T ss_pred CCCCCcH--HHHHHHhCC
Confidence 3444432 555566554
No 103
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.86 E-value=2.3e-09 Score=116.27 Aligned_cols=180 Identities=18% Similarity=0.268 Sum_probs=115.0
Q ss_pred CCCcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh-------
Q 005179 289 IDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------- 359 (710)
Q Consensus 289 l~~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~------- 359 (710)
+..++|....++++.+.+.. ....+++|+|++|||||++|+.+....... +.+++.+|+..+..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~-------~~~fv~v~~~~~~~~~~~~el 208 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS-------KEPFVALNVASIPRDIFEAEL 208 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT-------TSCEEEEETTTSCHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC-------CCCeEEEecCCCCHHHHHHHh
Confidence 45788988888888776544 445678999999999999999998765322 44667777655421
Q ss_pred -ccccCccHHHH---HHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------
Q 005179 360 -GAKERGELEAR---VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------- 422 (710)
Q Consensus 360 -g~~~~g~~e~~---l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~------------- 422 (710)
|. ..|.|... -...+. ...+.+||||||+.+ ..+.+..|..+++.+
T Consensus 209 fg~-~~g~~tga~~~~~g~~~---~a~~gtlfldei~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 209 FGY-EKGAFTGAVSSKEGFFE---LADGGTLFLDEIGEL-------------SLEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HCB-CTTSSTTCCSCBCCHHH---HTTTSEEEEESGGGC-------------CHHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred cCC-CCCCCCCcccccCCcee---eCCCcEEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 11 11110000 011222 234679999999999 556777777666532
Q ss_pred CeEEEEccChHHHHh--hhhccHHHHccccceEecCCCH----HHHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHH
Q 005179 423 ELQCIASTTQDEHRT--QFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (710)
Q Consensus 423 ~v~vI~att~~~~~~--~~~~d~aL~~Rf~~I~v~~Ps~----~~~~~IL~~l~~~~~~~~~---~~i~~~~l~~l~~l 492 (710)
++++|++||.+-... .-...+.|..|+..+.+..|+. ++...+++.++.++...++ ..+++++++.+..+
T Consensus 272 ~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~ 350 (387)
T 1ny5_A 272 NVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY 350 (387)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS
T ss_pred cEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 567999988743211 1124567777888777776764 5556666666666654444 34889988877643
No 104
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.83 E-value=2.4e-08 Score=107.35 Aligned_cols=178 Identities=19% Similarity=0.264 Sum_probs=112.2
Q ss_pred CcccCHHHHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhcc-------
Q 005179 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA------- 361 (710)
Q Consensus 291 ~liGr~~~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~------- 361 (710)
.++|....+.++...+.. ....+++++|++||||+.+++.+....... + .++.+++..+....
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~-------~-~fv~vnc~~~~~~~~~~~lfg 201 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK-------G-AFVDLNCASIPQELAESELFG 201 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC-------S-CEEEEESSSSCTTTHHHHHHE
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc-------C-CcEEEEcccCChHHHHHHhcC
Confidence 578887777766655432 455779999999999999999998765221 1 26777776542100
Q ss_pred ccCccHHH---HHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-------------CeE
Q 005179 362 KERGELEA---RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQ 425 (710)
Q Consensus 362 ~~~g~~e~---~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 425 (710)
...|.|.. .-...++ ...+.+||||||+.| ..+.+..|.++++.+ +++
T Consensus 202 ~~~g~~tga~~~~~g~~~---~a~~gtlfldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~r 265 (368)
T 3dzd_A 202 HEKGAFTGALTRKKGKLE---LADQGTLFLDEVGEL-------------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIR 265 (368)
T ss_dssp ECSCSSSSCCCCEECHHH---HTTTSEEEEETGGGS-------------CHHHHHHHHHHHHHSEECCBTCCCBEECCCE
T ss_pred ccccccCCcccccCChHh---hcCCCeEEecChhhC-------------CHHHHHHHHHHHHhCCcccCCCCcceeeeeE
Confidence 00110000 0001222 234568999999999 566777777777643 467
Q ss_pred EEEccChHHHHhh--hhccHHHHccccceEecCCCH----HHHHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHH
Q 005179 426 CIASTTQDEHRTQ--FEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (710)
Q Consensus 426 vI~att~~~~~~~--~~~d~aL~~Rf~~I~v~~Ps~----~~~~~IL~~l~~~~~~~~~---~~i~~~~l~~l~~l 492 (710)
+|++|+.+..... -...+.|..|+..+.+..|+. ++...+++.++.++....+ ..+++++++.+..+
T Consensus 266 ii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 266 VISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ 341 (368)
T ss_dssp EEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred EEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 9999887542211 123467888888666555543 5667777777777665444 45899998877543
No 105
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.77 E-value=4.5e-09 Score=113.54 Aligned_cols=77 Identities=31% Similarity=0.345 Sum_probs=60.2
Q ss_pred HHHHHHHhhCcccChHHHHHHHHHHH----HHhhcCC-------CCC----------CCCCeEEEEEcCCCCcHHHHHHH
Q 005179 620 LVGLEEQLKKRVIGQDEAVAAISRAV----KRSRVGL-------KDP----------NRPTAAMLFCGPTGVGKTELAKS 678 (710)
Q Consensus 620 l~~l~~~L~~~v~Gq~~a~~~i~~~i----~~~r~gl-------~~p----------~rp~~~~Lf~GPpGtGKT~lAka 678 (710)
+.++.+.|.+.|+||+++++.|..++ ++.+.|+ ++| .++..++||+||||||||++|++
T Consensus 12 ~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 12 PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHH
Confidence 35678889999999999999999888 5555544 111 12335899999999999999999
Q ss_pred HHHHHcCCCCcceeeCCCCCC
Q 005179 679 LAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 679 LA~~lfg~~~~li~~d~se~~ 699 (710)
||+.+ ...++.++++.+.
T Consensus 92 la~~l---~~~~~~~~~~~~~ 109 (376)
T 1um8_A 92 LAKHL---DIPIAISDATSLT 109 (376)
T ss_dssp HHHHT---TCCEEEEEGGGCC
T ss_pred HHHHh---CCCEEEecchhhh
Confidence 99997 3468888887764
No 106
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.73 E-value=1.4e-08 Score=99.36 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=60.6
Q ss_pred hhhhcCCCCcccCHH----HHHHHHHHHHcCC----CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 283 RASEELIDPVIGRET----EIQRIIQILCRRT----KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 283 ~~~~~~l~~liGr~~----~i~~l~~~L~~~~----~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
.+++.+|+++++.+. .+..+...+.... +.+++|+||||||||+++++++..+... +..++.+++
T Consensus 18 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-------~~~~~~~~~ 90 (202)
T 2w58_A 18 EILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-------NVSSLIVYV 90 (202)
T ss_dssp GGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEEEEEH
T ss_pred HHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEh
Confidence 345567788887543 3444455554432 2789999999999999999999988543 445666666
Q ss_pred hhhhhcc---ccCccHHHHHHHHHHHHHhcCCeEEEEccchhh
Q 005179 355 GLLMAGA---KERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (710)
Q Consensus 355 ~~l~~g~---~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l 394 (710)
..+.... ...+. +..++..+... .+|||||++..
T Consensus 91 ~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~lilDei~~~ 127 (202)
T 2w58_A 91 PELFRELKHSLQDQT----MNEKLDYIKKV--PVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHC---CC----CHHHHHHHHHS--SEEEEEEECCC
T ss_pred HHHHHHHHHHhccch----HHHHHHHhcCC--CEEEEcCCCCC
Confidence 5543211 01111 12233333333 49999999765
No 107
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.72 E-value=9.5e-09 Score=110.46 Aligned_cols=76 Identities=30% Similarity=0.357 Sum_probs=58.8
Q ss_pred HHHHHHhhCcccChHHHHHHHHHHHH----HhhcCCCCCC--CCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeC
Q 005179 621 VGLEEQLKKRVIGQDEAVAAISRAVK----RSRVGLKDPN--RPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFF 694 (710)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~i~----~~r~gl~~p~--rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d 694 (710)
.++++.|.+.|+||+++++.+..++. +.+.+..... .+..++||+||||||||++|++||+.+ ...++.++
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~ 83 (363)
T 3hws_A 7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTMAD 83 (363)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEec
Confidence 45677788889999999999998883 4444443222 244689999999999999999999997 35788888
Q ss_pred CCCCC
Q 005179 695 PSPFN 699 (710)
Q Consensus 695 ~se~~ 699 (710)
++++.
T Consensus 84 ~~~l~ 88 (363)
T 3hws_A 84 ATTLT 88 (363)
T ss_dssp HHHHT
T ss_pred hHHhc
Confidence 87654
No 108
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=98.72 E-value=2.2e-08 Score=92.75 Aligned_cols=65 Identities=31% Similarity=0.473 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhh
Q 005179 169 MPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (710)
Q Consensus 169 ~~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l 233 (710)
-+||+.++++|+.|.++|+++||.+|++||||+||++++++.+.++|+++|+|.+.++..+...+
T Consensus 6 ~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l 70 (145)
T 3fes_A 6 NRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDME 70 (145)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999999999999999999999999998887766
No 109
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.69 E-value=2.5e-08 Score=104.46 Aligned_cols=80 Identities=23% Similarity=0.246 Sum_probs=61.1
Q ss_pred HHHHHHHHhhCcccChHHHHHHHHHHHHH-------hhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC----
Q 005179 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKR-------SRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV---- 687 (710)
Q Consensus 619 ~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~-------~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~---- 687 (710)
.+.++.+.|...|+|++++++.|...+.. .+.|+..+ ++..++||+||||||||++|+++|+.+....
T Consensus 21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~ 99 (309)
T 3syl_A 21 GAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRK 99 (309)
T ss_dssp THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSS
T ss_pred cHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCC
Confidence 34566677777899999999999877643 34566654 4445899999999999999999999985532
Q ss_pred CcceeeCCCCCC
Q 005179 688 RIHYLFFPSPFN 699 (710)
Q Consensus 688 ~~li~~d~se~~ 699 (710)
..++.++++++.
T Consensus 100 ~~~~~~~~~~l~ 111 (309)
T 3syl_A 100 GHLVSVTRDDLV 111 (309)
T ss_dssp CCEEEECGGGTC
T ss_pred CcEEEEcHHHhh
Confidence 367888877763
No 110
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.69 E-value=1.6e-08 Score=105.62 Aligned_cols=77 Identities=31% Similarity=0.488 Sum_probs=59.7
Q ss_pred HHHHHHhhCcccChHHHHHHHHHHHHH--hhcCCCCC---CCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCC
Q 005179 621 VGLEEQLKKRVIGQDEAVAAISRAVKR--SRVGLKDP---NRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFP 695 (710)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~i~~--~r~gl~~p---~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~ 695 (710)
.++.+.|.+.|+||+++++.+..++.. .+.++..+ .++..++||+||||||||++|+++|+.+ ...++.+++
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~ 83 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 456778889999999999999988865 33333211 1122589999999999999999999997 347889999
Q ss_pred CCCCC
Q 005179 696 SPFNS 700 (710)
Q Consensus 696 se~~~ 700 (710)
+++..
T Consensus 84 ~~~~~ 88 (310)
T 1ofh_A 84 TKFTE 88 (310)
T ss_dssp GGGSS
T ss_pred hhccc
Confidence 88754
No 111
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=98.68 E-value=3.8e-08 Score=91.30 Aligned_cols=64 Identities=28% Similarity=0.457 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhh
Q 005179 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (710)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l 233 (710)
.||+.++++|+.|.++|+++||.||++||||+||++++++.+.++|+++|+|.+.++..+...+
T Consensus 6 ~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l 69 (146)
T 3fh2_A 6 RFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEII 69 (146)
T ss_dssp GBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999899999999999999999998887766
No 112
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.68 E-value=1.2e-07 Score=102.58 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=80.9
Q ss_pred CCCCcccCHHHHHHHHHHHHcCC-----CCCcEEEcCCCChHHHHHHHH-HHHHHhcCCCccccCceEEEeeh----hhh
Q 005179 288 LIDPVIGRETEIQRIIQILCRRT-----KNNPILLGESGVGKTAIAEGL-AIRIVQAEVPVFLLSKRIMSLDM----GLL 357 (710)
Q Consensus 288 ~l~~liGr~~~i~~l~~~L~~~~-----~~nvLL~GppG~GKT~la~~l-a~~l~~~~~p~~l~~~~v~~ld~----~~l 357 (710)
.+.+++|++...+.+.-.+.... .-|+||+|+||+ ||.+++++ ++.+. ..++..+. ..+
T Consensus 211 sIapI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p----------R~~ft~g~~ss~~gL 279 (506)
T 3f8t_A 211 AIAPLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP----------RGVYVDLRRTELTDL 279 (506)
T ss_dssp HHCCSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS----------SEEEEEGGGCCHHHH
T ss_pred HhcccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC----------CeEEecCCCCCccCc
Confidence 34459999875444444443321 128999999999 99999999 65431 11121111 011
Q ss_pred hhcccc-CccHHHHHHHHHHHHHhcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCC-----------CeE
Q 005179 358 MAGAKE-RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------ELQ 425 (710)
Q Consensus 358 ~~g~~~-~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~-----------~v~ 425 (710)
...... .| +.-+-.. +..+.+.+|||||++.+ ....+..|.+.|+++ ++.
T Consensus 280 t~s~r~~tG-~~~~~G~----l~LAdgGvl~lDEIn~~-------------~~~~qsaLlEaMEe~~VtI~G~~lparf~ 341 (506)
T 3f8t_A 280 TAVLKEDRG-WALRAGA----AVLADGGILAVDHLEGA-------------PEPHRWALMEAMDKGTVTVDGIALNARCA 341 (506)
T ss_dssp SEEEEESSS-EEEEECH----HHHTTTSEEEEECCTTC-------------CHHHHHHHHHHHHHSEEEETTEEEECCCE
T ss_pred eEEEEcCCC-cccCCCe----eEEcCCCeeehHhhhhC-------------CHHHHHHHHHHHhCCcEEECCEEcCCCeE
Confidence 100000 01 1000001 11234579999999998 556677777777754 467
Q ss_pred EEEccChHHHH------hhhhccHHHHcccc--ceEecCCCHHH
Q 005179 426 CIASTTQDEHR------TQFEKDKALARRFQ--PVLISEPSQED 461 (710)
Q Consensus 426 vI~att~~~~~------~~~~~d~aL~~Rf~--~I~v~~Ps~~~ 461 (710)
+|+|+|+.+.. ..+.+.+++.+||+ .+.++.|+.+.
T Consensus 342 VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 342 VLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp EEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred EEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 89999986511 12478899999997 34456666443
No 113
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.67 E-value=2.3e-08 Score=108.90 Aligned_cols=77 Identities=31% Similarity=0.488 Sum_probs=58.3
Q ss_pred HHHHHHhhCcccChHHHHHHHHHHHHHh--hcCCCCC---CCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCC
Q 005179 621 VGLEEQLKKRVIGQDEAVAAISRAVKRS--RVGLKDP---NRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFP 695 (710)
Q Consensus 621 ~~l~~~L~~~v~Gq~~a~~~i~~~i~~~--r~gl~~p---~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~ 695 (710)
.++.+.|.+.|+||+++++.+..++... +.++... ..+.+++||+||||||||++|++||+.+ ...++.+|+
T Consensus 7 ~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~ 83 (444)
T 1g41_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (444)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc---CCCceeecc
Confidence 3567788899999999999999887332 2222111 1234689999999999999999999996 447899998
Q ss_pred CCCCC
Q 005179 696 SPFNS 700 (710)
Q Consensus 696 se~~~ 700 (710)
+.+.+
T Consensus 84 ~~~~~ 88 (444)
T 1g41_A 84 TKFTE 88 (444)
T ss_dssp GGGC-
T ss_pred hhhcc
Confidence 87654
No 114
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=98.65 E-value=5.4e-08 Score=90.39 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhh
Q 005179 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (710)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l 233 (710)
.||+.++++|+.|..+|+++||.+|+++|||+||++++++.+..+|+++|+|.+.++..+...+
T Consensus 5 ~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l 68 (148)
T 1khy_A 5 RLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQAL 68 (148)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999887766
No 115
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=98.62 E-value=6.2e-08 Score=92.02 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhh
Q 005179 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (710)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l 233 (710)
.||+.++++|+.|.++|+++|+.+|++||||+||++++++.+.++|+++|+|.+.++..+. .+
T Consensus 24 kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l 86 (171)
T 3zri_A 24 KLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-ST 86 (171)
T ss_dssp HBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HH
T ss_pred HcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HH
Confidence 4999999999999999999999999999999999999999999999999999999998887 66
No 116
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=98.61 E-value=6.8e-08 Score=89.95 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhh
Q 005179 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (710)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l 233 (710)
.||+.++++|+.|.++|+++||.+|+++|||+||++++++.+..+|+++|+|.+.++..+...+
T Consensus 5 ~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l 68 (150)
T 2y1q_A 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLI 68 (150)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999999999999999998887766
No 117
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.58 E-value=2.5e-08 Score=95.84 Aligned_cols=100 Identities=19% Similarity=0.246 Sum_probs=58.4
Q ss_pred hhhhcCCCCcccCH----HHHHHHHHHHHc---CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh
Q 005179 283 RASEELIDPVIGRE----TEIQRIIQILCR---RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (710)
Q Consensus 283 ~~~~~~l~~liGr~----~~i~~l~~~L~~---~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~ 355 (710)
++++.+|+++++.+ ..+..+.+.+.. ..+.+++|+||+|+||||++++++..+.... +..++.++..
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~------g~~~~~~~~~ 76 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK------GIRGYFFDTK 76 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS------CCCCCEEEHH
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc------CCeEEEEEHH
Confidence 45667888888742 333444443332 3467899999999999999999999885211 3344445554
Q ss_pred hhhhccc---cCccHHHHHHHHHHHHHhcCCeEEEEccchhh
Q 005179 356 LLMAGAK---ERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (710)
Q Consensus 356 ~l~~g~~---~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l 394 (710)
.+..... ..+.. ..++..+. .+.+|+|||++..
T Consensus 77 ~~~~~~~~~~~~~~~----~~~~~~~~--~~~llilDE~~~~ 112 (180)
T 3ec2_A 77 DLIFRLKHLMDEGKD----TKFLKTVL--NSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHTCC----SHHHHHHH--TCSEEEEETCSSS
T ss_pred HHHHHHHHHhcCchH----HHHHHHhc--CCCEEEEeCCCCC
Confidence 4431100 00000 02222222 3569999999754
No 118
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.58 E-value=5.9e-08 Score=107.56 Aligned_cols=67 Identities=27% Similarity=0.252 Sum_probs=56.0
Q ss_pred hCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 628 ~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
.+.|+||+++++.+...+...+.|...| .++|||||||||||++|+++|+.+- ..-.++.++++++.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~----~~iLl~GppGtGKT~la~ala~~l~-~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAG----RAVLLAGPPGTGKTALALAIAQELG-SKVPFCPMVGSEVY 102 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTT----CEEEEECCTTSSHHHHHHHHHHHHC-TTSCEEEEEGGGGC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCC----CeEEEECCCcCCHHHHHHHHHHHhC-CCceEEEEeHHHHH
Confidence 4559999999999999888888776543 6899999999999999999999963 34678888888764
No 119
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.56 E-value=9e-08 Score=101.02 Aligned_cols=66 Identities=27% Similarity=0.312 Sum_probs=49.6
Q ss_pred ccChHHHHHHHHHHHHHh----hcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRS----RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~----r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
|+|++++++.+...+... ...- ...+|..++|||||||||||++|+++|+.+. ...++.++++++.
T Consensus 14 i~G~~~~k~~l~~~v~~p~~~~~~~~-~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 14 VAGLEGAKEALKEAVILPIKFPHLFT-GKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLV 83 (322)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCGGGSC-TTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSC
T ss_pred hcCHHHHHHHHHHHHHHHHhCHHHHh-CCCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHH
Confidence 889999998888777442 2211 1134456999999999999999999999962 4568888887764
No 120
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.50 E-value=8.1e-08 Score=100.37 Aligned_cols=61 Identities=25% Similarity=0.380 Sum_probs=48.1
Q ss_pred ccChHHHHHHHHHHHHHh--------hcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRS--------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~--------r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
|+|++++++.+...+.+. ..|+..+ .++|||||||||||++|++||+.+ ...++.++++++
T Consensus 17 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~----~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~l 85 (301)
T 3cf0_A 17 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPS----KGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPEL 85 (301)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----SEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC----ceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHHH
Confidence 889999998888877653 4455433 589999999999999999999995 356777776554
No 121
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.50 E-value=7.1e-08 Score=109.06 Aligned_cols=102 Identities=21% Similarity=0.195 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCC
Q 005179 591 VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGV 670 (710)
Q Consensus 591 ~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGt 670 (710)
......+...++.++++|+...+.+. ..+.+.++.|.+.++|+++++..+...+.........+ ...+||+|||||
T Consensus 44 ~~e~~~~~~~l~~~~~lp~~~~~~~~-~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~---g~~vll~Gp~Gt 119 (543)
T 3m6a_A 44 SAESSVIRNYIDWLVALPWTDETDDK-LDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLK---GPILCLAGPPGV 119 (543)
T ss_dssp CTTTTHHHHHHHHHHHSCSSCCCCCC-CCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCC---SCEEEEESSSSS
T ss_pred CchHhHHHHHHHHHhcCCCCcccccc-ccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccCC---CCEEEEECCCCC
Confidence 33445677888888899987765432 22445667788889999999999988776665554442 348999999999
Q ss_pred cHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 671 GKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 671 GKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
|||++|++||..+ ...+++++++.+.
T Consensus 120 GKTtlar~ia~~l---~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 120 GKTSLAKSIAKSL---GRKFVRISLGGVR 145 (543)
T ss_dssp SHHHHHHHHHHHH---TCEEEEECCCC--
T ss_pred CHHHHHHHHHHhc---CCCeEEEEecccc
Confidence 9999999999997 3467778776643
No 122
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.49 E-value=9.6e-08 Score=98.35 Aligned_cols=76 Identities=25% Similarity=0.290 Sum_probs=44.2
Q ss_pred hccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcc
Q 005179 611 QITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIH 690 (710)
Q Consensus 611 ~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~l 690 (710)
.++|++++.+.++++.|.+.|+.. +...-.+...|+..| .|+||+||||||||+||++||..+- ..+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~------~~~~~~l~~~~l~~~----~GvlL~Gp~GtGKTtLakala~~~~---~~~ 72 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAP------VRNPDQFKALGLVTP----AGVLLAGPPGCGKTLLAKAVANESG---LNF 72 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHH------HHSHHHHHHTTCCCC----SEEEEESSTTSCHHHHHHHHHHHTT---CEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHH------hhCHHHHHHcCCCCC----CeEEEECCCCCcHHHHHHHHHHHcC---CCE
Confidence 556666555554444444332211 111112344566554 4699999999999999999999852 257
Q ss_pred eeeCCCCCC
Q 005179 691 YLFFPSPFN 699 (710)
Q Consensus 691 i~~d~se~~ 699 (710)
+.++.+++.
T Consensus 73 i~i~g~~l~ 81 (274)
T 2x8a_A 73 ISVKGPELL 81 (274)
T ss_dssp EEEETTTTC
T ss_pred EEEEcHHHH
Confidence 888877764
No 123
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.48 E-value=1.9e-07 Score=95.09 Aligned_cols=65 Identities=31% Similarity=0.328 Sum_probs=50.3
Q ss_pred CcccChHHHHHHHHHHHHHhhc-------CCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRV-------GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~-------gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
+.|+|++++++.+...+...+. |+. +..++||+||||||||++|+++|+.+- ..++.++++++.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~----~~~~vll~G~~GtGKT~la~~la~~~~---~~~~~~~~~~~~~ 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAK----VPKGALLLGPPGCGKTLLAKAVATEAQ---VPFLAMAGAEFVE 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CC----CCCEEEEESCTTSSHHHHHHHHHHHHT---CCEEEEETTTTSS
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCC----CCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEechHHHHh
Confidence 4589999999999887755332 222 235899999999999999999999963 4688888887743
No 124
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.46 E-value=1.5e-07 Score=98.58 Aligned_cols=96 Identities=15% Similarity=0.249 Sum_probs=56.3
Q ss_pred hcCCCCcccCH----HHHHHHHHHHHcC---CCCCcEEEcCCCChHHHHHHHHHHHHH-hcCCCccccCceEEEeehhhh
Q 005179 286 EELIDPVIGRE----TEIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAIRIV-QAEVPVFLLSKRIMSLDMGLL 357 (710)
Q Consensus 286 ~~~l~~liGr~----~~i~~l~~~L~~~---~~~nvLL~GppG~GKT~la~~la~~l~-~~~~p~~l~~~~v~~ld~~~l 357 (710)
+.+|+++++.+ ..+..+..++... ...+++|+||||||||+|+.+++..+. .. +..+..+....+
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-------g~~v~~~~~~~l 192 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-------GVSTTLLHFPSF 192 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-------CCCEEEEEHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-------CCcEEEEEHHHH
Confidence 34555665432 2334444555542 257899999999999999999999886 43 456666666555
Q ss_pred hhc---cccCccHHHHHHHHHHHHHhcCCeEEEEccchhh
Q 005179 358 MAG---AKERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (710)
Q Consensus 358 ~~g---~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid~l 394 (710)
... ....+. +..++..+.. ..+|||||++..
T Consensus 193 ~~~l~~~~~~~~----~~~~~~~~~~--~~lLiiDdig~~ 226 (308)
T 2qgz_A 193 AIDVKNAISNGS----VKEEIDAVKN--VPVLILDDIGAE 226 (308)
T ss_dssp HHHHHCCCC--------CCTTHHHHT--SSEEEEETCCC-
T ss_pred HHHHHHHhccch----HHHHHHHhcC--CCEEEEcCCCCC
Confidence 421 111111 1222333333 349999999654
No 125
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.46 E-value=1e-07 Score=100.60 Aligned_cols=65 Identities=31% Similarity=0.400 Sum_probs=48.8
Q ss_pred ccChHHHHHHHHHHHHHhhc---CCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRV---GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~---gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
|+|++++++.+...+..... -.....+|..++|||||||||||++|++||+.+ ...++.++++++
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l 87 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL 87 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHH
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHH
Confidence 89999999999887744321 112234455699999999999999999999995 346777777654
No 126
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.44 E-value=5.9e-08 Score=90.31 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=64.3
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEc
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFID 389 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~ID 389 (710)
.+.+++|+||+|+|||+|+++++..+... +..++.++...+... .+ ...+.+|+||
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-------g~~~~~~~~~~~~~~------------~~-----~~~~~lLilD 90 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-------GKNAAYIDAASMPLT------------DA-----AFEAEYLAVD 90 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-------TCCEEEEETTTSCCC------------GG-----GGGCSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEcHHHhhHH------------HH-----HhCCCEEEEe
Confidence 56779999999999999999999988531 445666665444311 01 1235699999
Q ss_pred cchhhhhCCCCCCCCCCChHhHHHhhcccccCCCe-EEEEccChHHHHhhhhccHHHHcccc
Q 005179 390 EVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL-QCIASTTQDEHRTQFEKDKALARRFQ 450 (710)
Q Consensus 390 Eid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v-~vI~att~~~~~~~~~~d~aL~~Rf~ 450 (710)
|++.+... ....+.+++....+++.. ++|.+...+. .+... +.|.+||.
T Consensus 91 E~~~~~~~---------~~~~l~~li~~~~~~g~~~iiits~~~p~--~l~~~-~~L~SRl~ 140 (149)
T 2kjq_A 91 QVEKLGNE---------EQALLFSIFNRFRNSGKGFLLLGSEYTPQ--QLVIR-EDLRTRMA 140 (149)
T ss_dssp STTCCCSH---------HHHHHHHHHHHHHHHTCCEEEEEESSCTT--TSSCC-HHHHHHGG
T ss_pred CccccChH---------HHHHHHHHHHHHHHcCCcEEEEECCCCHH--Hcccc-HHHHHHHh
Confidence 99886211 123345555555555554 4444332222 12223 89999986
No 127
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.43 E-value=1.4e-07 Score=98.13 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 635 DEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 635 ~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
+..++.+...+.+..........| .++|||||||||||++|++||+.+ +..+++++++++
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p-~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l 72 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVP-LILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGEL 72 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCC-SEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-eEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHh
Confidence 344555555555555544444444 489999999999999999999997 457899987765
No 128
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.42 E-value=3.8e-07 Score=92.79 Aligned_cols=64 Identities=34% Similarity=0.382 Sum_probs=48.5
Q ss_pred cccChHHHHHHHHHHHHHhhc-------CCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRV-------GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~-------gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
.|+|++++++.+...+.+... |.. +..++||+||||||||++|++||+.+- ..++.++++++.+
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKT~la~~la~~~~---~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGK----IPKGVLMVGPPGTGKTLLAKAIAGEAK---VPFFTISGSDFVE 83 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----C----CCCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEECSCSSTT
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCC----CCCeEEEECcCCCCHHHHHHHHHHHcC---CCEEEEeHHHHHH
Confidence 489999999988877655321 222 225799999999999999999999963 3578888887643
No 129
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.42 E-value=2.1e-07 Score=86.01 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=49.8
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
.++|++.++..+...++.... .. ..+||+||||||||++|++|++.....+..++ +|++.+.+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~---~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~ 64 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TD---IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDN 64 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CC---SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTT
T ss_pred CceeCCHHHHHHHHHHHHHhC----CC---CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCc
Confidence 478999999999888766531 11 36899999999999999999998777777888 99887754
No 130
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=98.41 E-value=2.9e-07 Score=84.86 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhhh
Q 005179 171 FSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQ 234 (710)
Q Consensus 171 ~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l~ 234 (710)
||+.++++|+.|.++|+++||.+|+++|||+||+++++ +.++|+++|+|.+.++..+...+.
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~--~~~iL~~~g~~~~~l~~~l~~~l~ 63 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIE 63 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHH--HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCch--HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998654 899999999999999998877764
No 131
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.39 E-value=3.2e-07 Score=94.73 Aligned_cols=62 Identities=29% Similarity=0.443 Sum_probs=48.3
Q ss_pred ccChHHHHHHHHHHHHHh--------hcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRS--------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~--------r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
++|++++++.+...+... ..|+..+ .++||+||||||||++|+++|+.+ ...++.++++++.
T Consensus 19 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELFEKVGIEPP----KGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELV 88 (285)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCC----SEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGC
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCC----CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHH
Confidence 889999998888777543 2344333 589999999999999999999995 4468888877663
No 132
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.37 E-value=4.2e-07 Score=94.52 Aligned_cols=63 Identities=32% Similarity=0.470 Sum_probs=49.2
Q ss_pred ccChHHHHHHHHHHHHHhhc------CCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRV------GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~------gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
|+|++++++.+...+..... ++. .|..++||+||||||||++|+++|+.+ ...++.++++++.
T Consensus 23 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~---~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 23 IAGQDVAKQALQEMVILPSVRPELFTGLR---APAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLT 91 (297)
T ss_dssp SCCCHHHHHHHHHHTHHHHHCGGGSCGGG---CCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTS
T ss_pred hCChHHHHHHHHHHHHhhhhCHHHHhcCC---CCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHh
Confidence 89999999999888755321 222 233589999999999999999999996 3468888887764
No 133
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.35 E-value=4.1e-07 Score=100.33 Aligned_cols=66 Identities=27% Similarity=0.319 Sum_probs=47.8
Q ss_pred ccChHHHHHHHHHHHHHh----hcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRS----RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~----r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
|+|++++++.+...+... ... ....+|..++|||||||||||++|++||+.+. ...++.++++++.
T Consensus 136 i~G~~~~k~~l~~~v~~p~~~~~~~-~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~ 205 (444)
T 2zan_A 136 VAGLEGAKEALKEAVILPIKFPHLF-TGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLV 205 (444)
T ss_dssp SCSCHHHHHHHHHHHTHHHHCTTTT-SGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC---
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHh-hccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHH
Confidence 899999999988877432 211 11123446999999999999999999999972 3568888888763
No 134
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.35 E-value=1.7e-07 Score=100.24 Aligned_cols=65 Identities=29% Similarity=0.382 Sum_probs=48.1
Q ss_pred cccChHHHHHHHHHHHHHh----hcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRS----RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~----r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.|+|++++++.+...+.+. ..... ..+|..++|||||||||||++|++||+.+ ...++.++++++
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l 120 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL 120 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHH
Confidence 3899999999988877443 22111 23445689999999999999999999997 346777776554
No 135
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.35 E-value=1.6e-06 Score=107.89 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=46.8
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh-------hcc-------ccCccHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AGA-------KERGELEARVTTLI 375 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~-------~g~-------~~~g~~e~~l~~~~ 375 (710)
.+..++|+||||+|||+|+..++..+... +..+..++..... .|. ......++.+..+-
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~-------g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~ 803 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 803 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHc-------CCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHH
Confidence 34568999999999999999999887543 2334444332111 010 00112332222222
Q ss_pred HHHHhcCCeEEEEccchhhh
Q 005179 376 SEIQKSGDVILFIDEVHTLI 395 (710)
Q Consensus 376 ~~~~~~~~~IL~IDEid~l~ 395 (710)
..+....+.+||||.+..+.
T Consensus 804 ~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 804 ALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCC
T ss_pred HHHHccCCCEEEEechhhhc
Confidence 22334678899999999986
No 136
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.33 E-value=1.6e-06 Score=92.15 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=102.3
Q ss_pred HHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHH----hc
Q 005179 306 LCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KS 381 (710)
Q Consensus 306 L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~----~~ 381 (710)
+..+..+..||+||+|.||++.+..+++.+.+.... .+.++.++ +. .+ ++.+++.+. .+
T Consensus 13 l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~------~~---~~----~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 13 LNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE----EHHTFSID------PN---TD----WNAIFSLCQAMSLFA 75 (343)
T ss_dssp HHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC----EEEEEECC------TT---CC----HHHHHHHHHHHHHCC
T ss_pred HhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC----eeEEEEec------CC---CC----HHHHHHHhcCcCCcc
Confidence 333445567899999999999999999987643211 11223332 11 22 334444443 24
Q ss_pred CCeEEEEccchh-hhhCCCCCCCCCCChHhHHHhhcccccC--CCeE-EEEccChHHHHhhhhccHHHHccccceEecCC
Q 005179 382 GDVILFIDEVHT-LIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQ-CIASTTQDEHRTQFEKDKALARRFQPVLISEP 457 (710)
Q Consensus 382 ~~~IL~IDEid~-l~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~v~-vI~att~~~~~~~~~~d~aL~~Rf~~I~v~~P 457 (710)
+.-|++|||+|. + ..+..+.|..++++ ...+ |+.+++.+...+...+-+++.+|+..+.+.++
T Consensus 76 ~~kvvii~~~~~kl-------------~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 76 SRQTLLLLLPENGP-------------NAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp SCEEEEEECCSSCC-------------CTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred CCeEEEEECCCCCC-------------ChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 567999999998 7 22356667777775 2344 44444322111122455889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q 005179 458 SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (710)
Q Consensus 458 s~~~~~~IL~~l~~~~~~~~~~~i~~~~l~~l~~ls~~ 495 (710)
+..+....++..+. ..++.+++++++.++..+.+
T Consensus 143 ~~~~l~~~l~~~~~----~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 143 EQAQLPRWVAARAK----QLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp CTTHHHHHHHHHHH----HTTCEECHHHHHHHHHSSTT
T ss_pred CHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHhch
Confidence 99998877776665 45899999999999888654
No 137
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.32 E-value=2.8e-07 Score=94.27 Aligned_cols=63 Identities=32% Similarity=0.412 Sum_probs=47.2
Q ss_pred cccChHHHHHHHHHHHHHh-------hcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRS-------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~-------r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
.++|++++++.+...+... ..|...| .++||+||||||||++|++||+.+. ..++.++++.+.
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~vll~G~~GtGKT~la~~la~~~~---~~~~~v~~~~~~ 81 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIP----KGVLLVGPPGTGKTLLAKAVAGEAH---VPFFSMGGSSFI 81 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCC----SCCCCBCSSCSSHHHHHHHHHHHHT---CCCCCCCSCTTT
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCC----ceEEEECCCCCcHHHHHHHHHHHhC---CCEEEechHHHH
Confidence 3888888888888766532 2244333 4789999999999999999999963 367777777653
No 138
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.29 E-value=9.5e-07 Score=97.55 Aligned_cols=62 Identities=31% Similarity=0.464 Sum_probs=49.5
Q ss_pred ccChHHHHHHHHHHHHHhh-------cCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSR-------VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r-------~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
|+|++++++.+...+.+.+ .|.+.| .++||+||||||||++|++||..+ ...++.++++++.
T Consensus 18 i~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p----~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~ 86 (476)
T 2ce7_A 18 VGGAEEAIEELKEVVEFLKDPSKFNRIGARMP----KGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFV 86 (476)
T ss_dssp CCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCC----SEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTT
T ss_pred hCCcHHHHHHHHHHHHHhhChHHHhhcCCCCC----CeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHH
Confidence 8999999998888776543 344433 579999999999999999999986 3468888887774
No 139
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.26 E-value=1.1e-06 Score=92.87 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=51.6
Q ss_pred HHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 619 LLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 619 ~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
.+..+...+...|+||+++++.+..++... +++||+||||||||++|+++|+.+- ..+++++++
T Consensus 17 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~-----------~~vll~G~pGtGKT~la~~la~~~~---~~~~~i~~~ 80 (331)
T 2r44_A 17 KIKEVIDEVGKVVVGQKYMINRLLIGICTG-----------GHILLEGVPGLAKTLSVNTLAKTMD---LDFHRIQFT 80 (331)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHT-----------CCEEEESCCCHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred HHHHHHHHhccceeCcHHHHHHHHHHHHcC-----------CeEEEECCCCCcHHHHHHHHHHHhC---CCeEEEecC
Confidence 345677888899999999999988776542 3789999999999999999999863 346666654
No 140
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.25 E-value=9.5e-07 Score=94.56 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=50.3
Q ss_pred cccChHHHHHHHHHHHHHhhcC---CCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVG---LKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~g---l~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
.|+|++++++.+...+...... .....++..++||+||||||||++|++||+.+ ...++.++++++.+
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTS 155 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCC
T ss_pred HhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhc
Confidence 3899999999998887653110 00011234589999999999999999999995 45788888887643
No 141
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.24 E-value=7.3e-07 Score=91.10 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=49.9
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
.++|++.++..+...++..... + .++||+||||||||++|++|++.+......++.+|++.+.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~---~----~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPL---D----KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTS---C----SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred cceeCCHHHHHHHHHHHHHhCC---C----CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence 3789999998888777665321 1 3789999999999999999999987777789999999873
No 142
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.22 E-value=1.2e-06 Score=94.85 Aligned_cols=67 Identities=30% Similarity=0.397 Sum_probs=49.8
Q ss_pred ccChHHHHHHHHHHHHHhhcC---CCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVG---LKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~g---l~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
|+|++++++.|...+...... ......|..++|||||||||||++|++||+.+ ...++.++++++.+
T Consensus 117 iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 117 IAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTS 186 (389)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC--
T ss_pred hCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhc
Confidence 899999999998887554320 00111233589999999999999999999995 45789999988754
No 143
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.21 E-value=1.3e-06 Score=97.17 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 618 MLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 618 ~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
..+..+.+.+...|+|++++++.+..++... +++||+||||||||++|++||+.+
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~-----------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT-----------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-----------CeeEeecCchHHHHHHHHHHHHHH
Confidence 4556788899999999999999887765543 389999999999999999999986
No 144
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.20 E-value=1.6e-06 Score=92.89 Aligned_cols=64 Identities=25% Similarity=0.222 Sum_probs=49.0
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
+.++|++.+++.+.......+.|...+ .++||+||||||||++|+++|+.+- ....++.++.++
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~----~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~ 107 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAG----RAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSE 107 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTT----CEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGG
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCC----CEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchh
Confidence 349999999999887777776654332 4899999999999999999999974 333455555444
No 145
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.19 E-value=9.4e-07 Score=98.27 Aligned_cols=62 Identities=27% Similarity=0.455 Sum_probs=49.5
Q ss_pred cccChHHHHHHHHHHHHHh--------hcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRS--------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~--------r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.|+|++++++.|...+.+. +.|...| .++|||||||||||++|++||+.+ ...++.++++++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~----~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l 274 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPP----RGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 274 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCC----CEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCC----CcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHh
Confidence 4999999999998877553 3344433 589999999999999999999995 567888886654
No 146
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.17 E-value=2.3e-06 Score=95.10 Aligned_cols=64 Identities=31% Similarity=0.414 Sum_probs=49.4
Q ss_pred cccChHHHHHHHHHHHHHhh-------cCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSR-------VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r-------~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
.|+|+++++..+.+.+...+ .|+..| .++||+||||||||+||++||..+ ...++.++.+++..
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip----~GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP----KGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVE 102 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCC----SEEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTS
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCC----ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHH
Confidence 38999999999888776542 223222 479999999999999999999985 35688888877643
No 147
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.15 E-value=5.7e-07 Score=82.94 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=44.2
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
++|+++++..+...++..... . .++||+||||||||++|++|++... .++.+|++++
T Consensus 6 ~iG~s~~~~~l~~~~~~~~~~----~---~~vll~G~~GtGKt~lA~~i~~~~~----~~~~~~~~~~ 62 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAAKR----T---SPVFLTGEAGSPFETVARYFHKNGT----PWVSPARVEY 62 (143)
T ss_dssp --CCCHHHHHHHHHHHHHHTC----S---SCEEEEEETTCCHHHHHGGGCCTTS----CEECCSSTTH
T ss_pred ceeCCHHHHHHHHHHHHHhCC----C---CcEEEECCCCccHHHHHHHHHHhCC----CeEEechhhC
Confidence 789999999988887765311 1 3689999999999999999998753 7888888765
No 148
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.13 E-value=3.1e-06 Score=93.95 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhh
Q 005179 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (710)
Q Consensus 170 ~~s~~~~~vl~~A~~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l 233 (710)
.||+.++++|+.|.++|+++||.||+++|||+||++++++.+..+|+++|+|.+.++..+...+
T Consensus 5 ~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l 68 (468)
T 3pxg_A 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLI 68 (468)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred hhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999999999999999998877665
No 149
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=3.6e-06 Score=94.65 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=52.4
Q ss_pred cccChHHHHHHHHHHHHHhh----cCCCCCCC----CCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSR----VGLKDPNR----PTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r----~gl~~p~r----p~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
.++|++++++.+...+.... .|++.+++ +..++||+||||||||++|+++|+.+ +..++.++++.+..
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRS 115 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCC
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcch
Confidence 39999999999988875432 34444432 33589999999999999999999997 45688888887644
No 150
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.11 E-value=9.4e-07 Score=90.70 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=43.9
Q ss_pred hhCcccChHHHHHHHHHH----HHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 627 LKKRVIGQDEAVAAISRA----VKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 627 L~~~v~Gq~~a~~~i~~~----i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
+...++|++++++.+... +...+.. ..++..++||+||||||||++|+++|+.+ ...++.+++++
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~ 99 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPD 99 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGG
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHH
Confidence 344577777777666653 2222211 12334699999999999999999999995 33577776653
No 151
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.09 E-value=3.5e-06 Score=89.15 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=49.4
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
.++|++++++.+...+...+.. ..+..++||+||||||||++|+++|+.+ ...++.++++.+.
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~----~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~ 92 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKR----NECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIE 92 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHT----TSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCC
T ss_pred HhCChHHHHHHHHHHHHHHHhc----CCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhcc
Confidence 3899999999999988776532 2233589999999999999999999995 3357777776553
No 152
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.03 E-value=5.3e-06 Score=80.28 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcC-CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 298 EIQRIIQILCRR-TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 298 ~i~~l~~~L~~~-~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
-+..+..++..- .+++++|+||||||||++|.++++.+
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 344455555442 34579999999999999999999987
No 153
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.02 E-value=5e-06 Score=86.81 Aligned_cols=62 Identities=24% Similarity=0.327 Sum_probs=51.9
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.++|++.++..+...+..... . ..++||+||||||||++|++|++........++.+|++.+
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~---~----~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAP---S----DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCS---T----TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CcEECCHHHHHHHHHHHHHhC---C----CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 488999999998888776531 1 1478999999999999999999997777788999999876
No 154
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.01 E-value=6.6e-06 Score=83.33 Aligned_cols=59 Identities=32% Similarity=0.406 Sum_probs=41.4
Q ss_pred ccChHHHHHHHHHHHHHh-------hcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 631 VIGQDEAVAAISRAVKRS-------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~-------r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
|+|+++++..+.+.+... ..++..| .+++|+||||||||+|+++||..+- ...+.++.+
T Consensus 18 i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~----~g~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~ 83 (254)
T 1ixz_A 18 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIP----KGVLLVGPPGVGKTHLARAVAGEAR---VPFITASGS 83 (254)
T ss_dssp CCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC----SEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH
T ss_pred hCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCC----CeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHH
Confidence 777777777776655332 2344333 4699999999999999999999852 446666543
No 155
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=4.1e-06 Score=88.90 Aligned_cols=59 Identities=29% Similarity=0.447 Sum_probs=45.4
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCC--cceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVR--IHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~--~li~~d~se~ 698 (710)
++||+++++.+...++..+ +.++||+||||||||++|+++|+.+++... .++.+|.+..
T Consensus 27 ~~g~~~~~~~L~~~i~~g~---------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGK---------LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTC---------CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred hcCcHHHHHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 8899999999988876432 125899999999999999999999987542 3444555543
No 156
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.00 E-value=3.7e-06 Score=80.38 Aligned_cols=61 Identities=25% Similarity=0.342 Sum_probs=44.6
Q ss_pred hCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC-------CCCcceeeCCCC
Q 005179 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG-------SVRIHYLFFPSP 697 (710)
Q Consensus 628 ~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg-------~~~~li~~d~se 697 (710)
...++|+++.++.+...+.. . ...++||+||||||||++|+++++.+.. ....++.++++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~-----~----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR-----R----TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS-----S----SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred ccccccchHHHHHHHHHHhc-----C----CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH
Confidence 35589999988888766533 1 1247899999999999999999999854 234456666544
No 157
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.00 E-value=9.4e-06 Score=79.08 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=67.2
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHhcCCCccccC-ceEEEeehhhhhhcc------c-----cCcc--HHHHHHHHHHHHH
Q 005179 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS-KRIMSLDMGLLMAGA------K-----ERGE--LEARVTTLISEIQ 379 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~~~~~p~~l~~-~~v~~ld~~~l~~g~------~-----~~g~--~e~~l~~~~~~~~ 379 (710)
.+++|+||+|||+++..++.....-+ +. -.+ ..++..++..+..+. + ..++ ....+..++. ..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~-~~-~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~ 84 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFK-PD-ENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK-KP 84 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGS-CC-TTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT-SG
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhc-cc-ccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh-cc
Confidence 58999999999999887655432000 00 012 333333332222110 0 0000 0011222211 12
Q ss_pred hcCCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCC
Q 005179 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPS 458 (710)
Q Consensus 380 ~~~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps 458 (710)
...+.||+|||++.+.+....+ .+ ...+...|.. -....+.+|.++.+.. .++..++.|+. .+.+..|.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~---~e-~~rll~~l~~-~r~~~~~iil~tq~~~-----~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAG---SK-IPENVQWLNT-HRHQGIDIFVLTQGPK-----LLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTT---CC-CCHHHHGGGG-TTTTTCEEEEEESCGG-----GBCHHHHTTEEEEEEEEECS
T ss_pred ccCceEEEEEChhhhccCcccc---ch-hHHHHHHHHh-cCcCCeEEEEECCCHH-----HHhHHHHHHhheEEEEcCcc
Confidence 3457899999999997543211 01 1122232221 2233456666667654 68889999997 67776654
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=5.2e-06 Score=87.05 Aligned_cols=59 Identities=34% Similarity=0.486 Sum_probs=45.8
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC--CcceeeCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV--RIHYLFFPSP 697 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~--~~li~~d~se 697 (710)
.++|++++++.+...+...+ + .++||+||||||||++|+++|+.+++.. ..++.++.++
T Consensus 26 ~~~g~~~~~~~l~~~l~~~~--------~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTGS--------M-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHTC--------C-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred HhhCCHHHHHHHHHHHHcCC--------C-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 48999999999988776532 1 3699999999999999999999987643 2355555554
No 159
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.97 E-value=4.4e-06 Score=79.58 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=43.8
Q ss_pred hCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC-------CCCcceeeCCC
Q 005179 628 KKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG-------SVRIHYLFFPS 696 (710)
Q Consensus 628 ~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg-------~~~~li~~d~s 696 (710)
...++|+++.++.+...+... ...++||+||||||||++|+++|+.+.. ....++.++++
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~---------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR---------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLS 87 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS---------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHH
T ss_pred cchhhcchHHHHHHHHHHhCC---------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHH
Confidence 345899999888877665321 1247899999999999999999999855 23445555544
No 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.93 E-value=8.8e-06 Score=85.39 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=48.5
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFNS 700 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~~ 700 (710)
.++|++.++..+...+.....+- ++..++||+||||||||++|+++++.+. ..++.++++.+..
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~----~~~~~vll~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARK----EPLEHLLLFGPPGLGKTTLAHVIAHELG---VNLRVTSGPAIEK 76 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHC----SCCCCCEEECCTTCCCHHHHHHHHHHHT---CCEEEECTTTCCS
T ss_pred HhhCHHHHHHHHHHHHHHHHccC----CCCCcEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeccccCC
Confidence 48999999999988886654211 1124789999999999999999999873 3577777776643
No 161
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.93 E-value=7.5e-06 Score=86.66 Aligned_cols=49 Identities=31% Similarity=0.509 Sum_probs=39.8
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
++||+.+++.+...+...+.. +.+...++|+||||||||+||++||..+
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~----~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMR----GEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH----TCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 778999999998888665321 2233579999999999999999999997
No 162
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.91 E-value=9.2e-06 Score=79.54 Aligned_cols=62 Identities=34% Similarity=0.469 Sum_probs=46.3
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC--CcceeeCCCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV--RIHYLFFPSPFNS 700 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~--~~li~~d~se~~~ 700 (710)
.++|++++++.+...+...+ ..++||+||||||||++|+++++.+.+.. ..++.++.+...+
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERKN---------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTTC---------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC
T ss_pred HHcCcHHHHHHHHHHHhCCC---------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC
Confidence 48899999998888775421 12589999999999999999999986543 3456666665533
No 163
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.91 E-value=5e-06 Score=89.44 Aligned_cols=65 Identities=17% Similarity=0.043 Sum_probs=50.8
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC--------CCcceeeCCCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS--------VRIHYLFFPSPF 698 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~--------~~~li~~d~se~ 698 (710)
+.++|+++.++.+...+.....+-. ..+++|+||||||||++|+++++.+... ...++.++++..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~-----~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEV-----KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCC-----CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC-----CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence 5699999999999988877654421 1489999999999999999999997443 456777776554
No 164
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.91 E-value=1.1e-05 Score=84.85 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=46.3
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.++|+++++..+...+... ++...+||+||||||||++|+++|+.+ ...++.++.+.+
T Consensus 27 ~ivg~~~~~~~l~~~l~~~--------~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~ 84 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKG--------KIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDC 84 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTT--------CCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTC
T ss_pred HHhCcHHHHHHHHHHHHcC--------CCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccccc
Confidence 3899999999998887722 122478999999999999999999997 346778887765
No 165
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.90 E-value=1.3e-05 Score=82.31 Aligned_cols=59 Identities=32% Similarity=0.406 Sum_probs=41.5
Q ss_pred ccChHHHHHHHHHHHHHh-------hcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 631 VIGQDEAVAAISRAVKRS-------RVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~-------r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
|+|+++++..+.+.+... ..++..| .+++|+||||||||+|+++||..+- ...+.++.+
T Consensus 42 i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~----~gvll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~ 107 (278)
T 1iy2_A 42 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIP----KGVLLVGPPGVGKTHLARAVAGEAR---VPFITASGS 107 (278)
T ss_dssp SSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC----CEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH
T ss_pred hCChHHHHHHHHHHHHHHHCHHHHHHcCCCCC----CeEEEECCCcChHHHHHHHHHHHcC---CCEEEecHH
Confidence 677777777766655432 2344333 3699999999999999999999863 456666544
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.89 E-value=9.6e-06 Score=89.18 Aligned_cols=55 Identities=27% Similarity=0.403 Sum_probs=43.4
Q ss_pred cccChHHHH---HHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 630 RVIGQDEAV---AAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 630 ~v~Gq~~a~---~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
.++||++++ ..+...+...+. .++||+||||||||++|++||+.+ ...++.++.+
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~~~---------~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~ 84 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAGHL---------HSMILWGPPGTGKTTLAEVIARYA---NADVERISAV 84 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHTCC---------CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETT
T ss_pred HhCCcHHHHhchHHHHHHHHcCCC---------cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEec
Confidence 399999999 777777766542 389999999999999999999995 3355665543
No 167
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.89 E-value=4.6e-06 Score=87.16 Aligned_cols=61 Identities=34% Similarity=0.463 Sum_probs=46.5
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC--CcceeeCCCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV--RIHYLFFPSPFNS 700 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~--~~li~~d~se~~~ 700 (710)
++|++++++.+...+... ++ .++||+||||||||++|+++|+.+++.. ..++.+|.+...+
T Consensus 19 ~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVERK--------NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (319)
T ss_dssp SCSCHHHHHHHHTTTTTT--------CC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC
T ss_pred HhCCHHHHHHHHHHHhCC--------CC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC
Confidence 889999998887665421 11 2599999999999999999999997754 3467777776543
No 168
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.89 E-value=4.4e-05 Score=87.20 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=40.0
Q ss_pred hcCCCCcccCHHHHHHHHHHHHcC--CCCCcEEEcCCCChHHHHHHHHHHH
Q 005179 286 EELIDPVIGRETEIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIR 334 (710)
Q Consensus 286 ~~~l~~liGr~~~i~~l~~~L~~~--~~~nvLL~GppG~GKT~la~~la~~ 334 (710)
|.....+|||+.++.++.+.+... ..+-++|+|++|+|||+||..+++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 345567999999999999998742 3345789999999999999998754
No 169
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=3.4e-06 Score=88.26 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=46.1
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC--CcceeeCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV--RIHYLFFPSPF 698 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~--~~li~~d~se~ 698 (710)
.++|++++++.+...++.. ++ .++||+||||||||++|+++|+.+++.. ..++.++.+..
T Consensus 22 ~~~g~~~~~~~l~~~l~~~--------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDG--------NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSC--------CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred HHHCCHHHHHHHHHHHHcC--------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 4899999999998876532 11 2499999999999999999999986543 23666776654
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=5e-06 Score=88.30 Aligned_cols=61 Identities=30% Similarity=0.411 Sum_probs=45.6
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC---CCcceeeCCCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS---VRIHYLFFPSPF 698 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~---~~~li~~d~se~ 698 (710)
..++|++++++.+...+...+ ..++||+||||||||++|+++|+.+.+. ...++.++.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN---------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT---------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred HHhhCCHHHHHHHHHHHhcCC---------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 348999999988877654321 1359999999999999999999998642 234666776664
No 171
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.83 E-value=8.9e-06 Score=84.34 Aligned_cols=74 Identities=16% Similarity=0.324 Sum_probs=45.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEcc
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDE 390 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDE 390 (710)
+..++|+||||+|||+|+..++.. ....+ ..+.+.....+. .+..+.+..+..+.+.+...+ +||||+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~G~~V-------lyIs~~~eE~v~--~~~~~le~~l~~i~~~l~~~~--LLVIDs 190 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-LGGKD-------KYATVRFGEPLS--GYNTDFNVFVDDIARAMLQHR--VIVIDS 190 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-HHTTS-------CCEEEEBSCSST--TCBCCHHHHHHHHHHHHHHCS--EEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-CCCCE-------EEEEecchhhhh--hhhcCHHHHHHHHHHHHhhCC--EEEEec
Confidence 344699999999999999999876 21111 112221011111 112455666666666666554 999999
Q ss_pred chhhhh
Q 005179 391 VHTLIG 396 (710)
Q Consensus 391 id~l~~ 396 (710)
++.+..
T Consensus 191 I~aL~~ 196 (331)
T 2vhj_A 191 LKNVIG 196 (331)
T ss_dssp CTTTC-
T ss_pred cccccc
Confidence 999854
No 172
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.80 E-value=1.5e-05 Score=83.26 Aligned_cols=64 Identities=11% Similarity=-0.012 Sum_probs=46.2
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC-------CcceeeCCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV-------RIHYLFFPSPFN 699 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~-------~~li~~d~se~~ 699 (710)
+.|.++-++.|...+...-.+-.. .++++|||||||||++++++++.|.... -..+.+|+....
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~-----~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQN-----KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-----CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCC-----CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 556677777888777665433322 4899999999999999999999985421 235667766543
No 173
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.79 E-value=2.9e-05 Score=83.37 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=52.9
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC-CCcceeeCCCCCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS-VRIHYLFFPSPFNS 700 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~-~~~li~~d~se~~~ 700 (710)
..++|+++.++.+...+.....|-. + .+ ..++|+||||||||++++++++.+... ...++.++++....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~-~-~~-~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPG-H-HY-PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTT-S-SC-CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC-C-CC-CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 4589999999999888877644421 1 10 279999999999999999999998776 46678888776543
No 174
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.79 E-value=7.1e-05 Score=71.52 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=21.0
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
++.|+||+|+|||||++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999876
No 175
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.77 E-value=1e-05 Score=86.82 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=49.8
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC------CCcceeeCCCCCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS------VRIHYLFFPSPFNS 700 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~------~~~li~~d~se~~~ 700 (710)
..++|+++.++.+...+.....+- ...+++|+||||||||++|+++++.+... ...++.++++....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~-----~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 91 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGE-----KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET 91 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSC-----CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCC-----CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence 458999999999887765432121 12489999999999999999999997432 55678888776544
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.77 E-value=2e-05 Score=76.74 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
.+++|+||||||||+||+++++.+......++.+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 48999999999999999999999876655565555543
No 177
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.76 E-value=1.9e-05 Score=78.66 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
.+++|+||||||||++|+++|+.+......++.++++++.
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 4899999999999999999999987666667777776653
No 178
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.74 E-value=1.2e-05 Score=85.28 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=33.8
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
++|+++++..+........ .+++||+||||||||++|+++|+.+.
T Consensus 26 i~G~~~~~~~l~~~~~~~~---------~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 26 IVGQEDMKLALLLTAVDPG---------IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp SCSCHHHHHHHHHHHHCGG---------GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ccChHHHHHHHHHHhhCCC---------CceEEEECCCCccHHHHHHHHHHhCc
Confidence 8899887776543322111 14699999999999999999999864
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.72 E-value=1.2e-05 Score=85.67 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=38.3
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVR 688 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~ 688 (710)
.++||+++++.+...+. . .++.. ++||+||||||||++++++|+.+++...
T Consensus 15 ~~vg~~~~~~~l~~~~~------~-~~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~ 65 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSD------Q-PRDLP-HLLLYGPNGTGKKTRCMALLESIFGPGV 65 (354)
T ss_dssp GCCSCHHHHHHHHTTTT------C-TTCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTC
T ss_pred HhcCCHHHHHHHHHHHh------h-CCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 38899998888766541 1 11222 4999999999999999999998876543
No 180
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.71 E-value=3.6e-05 Score=76.23 Aligned_cols=48 Identities=35% Similarity=0.570 Sum_probs=39.8
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
.++|++++++.+...+...+. ...++|+||||||||++|+++++.+..
T Consensus 24 ~~~g~~~~~~~l~~~l~~~~~--------~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLGRI--------HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHTCC--------CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 489999999999888765321 137899999999999999999998754
No 181
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.70 E-value=0.00012 Score=80.82 Aligned_cols=60 Identities=15% Similarity=0.337 Sum_probs=40.4
Q ss_pred hhhHHhhhhcCCCCcc-cCHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 278 VDLTARASEELIDPVI-GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 278 ~~l~~~~~~~~l~~li-Gr~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~ 338 (710)
.+|..+++|-.|+.+- ++...+..+...+.... .+++|.|+||||||+++..++..+...
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 4566777888888775 56667777776666543 389999999999999999999988654
No 182
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.69 E-value=2e-05 Score=75.26 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
.+++|+||||||||+|+++++..+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999986
No 183
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.67 E-value=6.4e-05 Score=72.70 Aligned_cols=26 Identities=31% Similarity=0.683 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
.++|||||||||||++|.+||+.+.|
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999999866
No 184
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.65 E-value=4.6e-05 Score=81.44 Aligned_cols=49 Identities=35% Similarity=0.560 Sum_probs=40.7
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
.++|++++++.+...+...+. ...+||+||||||||++|+++|+.+...
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~--------~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRI--------HHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCC--------CSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred hccCcHHHHHHHHHHHHhCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999988865331 1378999999999999999999998653
No 185
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.60 E-value=0.00012 Score=74.01 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=28.3
Q ss_pred HHHHHHHHcC-C-CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 300 QRIIQILCRR-T-KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 300 ~~l~~~L~~~-~-~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.-+..++... . +++++|+||||||||.++.+||..+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3455566554 3 4669999999999999999999864
No 186
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.58 E-value=9.6e-06 Score=92.46 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=53.7
Q ss_pred CcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhh-cCCCC-CCCCCeEEEEEcC
Q 005179 590 AVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSR-VGLKD-PNRPTAAMLFCGP 667 (710)
Q Consensus 590 ~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r-~gl~~-p~rp~~~~Lf~GP 667 (710)
..++.+++..+.+.+.. + ..+..+.+.+...|+||++++..+..++.... ....+ ..+.-.++||+||
T Consensus 266 ~~~t~~~~~~i~~~~~~-~---------~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~Gp 335 (595)
T 3f9v_A 266 VIISEEDEKKIKDLAKD-P---------WIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGD 335 (595)
T ss_dssp CCCTTSTHHHHHTTSST-T---------TGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEES
T ss_pred CCCCHHHHHHHHHHhhC-c---------HHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECC
Confidence 35666676665543221 1 22446777899999999998887754332110 00011 1112238999999
Q ss_pred CCCcHHHHHHHHHHHH
Q 005179 668 TGVGKTELAKSLAACY 683 (710)
Q Consensus 668 pGtGKT~lAkaLA~~l 683 (710)
||||||+||++||+.+
T Consensus 336 pGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 336 PGTAKSQMLQFISRVA 351 (595)
T ss_dssp SCCTHHHHHHSSSTTC
T ss_pred CchHHHHHHHHHHHhC
Confidence 9999999999999986
No 187
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.57 E-value=6.6e-05 Score=79.37 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=39.3
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSV 687 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~ 687 (710)
.-||+++++.+...++..+. ..++||+||||||||++|+++|+.++...
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~--------~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRG--------HHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCC--------CSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred CCchHHHHHHHHHHHHcCCc--------ceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 45788888888887764431 23799999999999999999999998654
No 188
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.54 E-value=1.8e-05 Score=83.16 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.+++|+||||||||++|+++++.+...+..++.++++++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 478999999999999999999998765566777776554
No 189
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.54 E-value=5.7e-05 Score=86.50 Aligned_cols=57 Identities=33% Similarity=0.503 Sum_probs=46.0
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
++||+.+++.+...+... ..+||+||||||||++|++||..+.......+.++....
T Consensus 43 i~G~~~~l~~l~~~i~~g-----------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQK-----------RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCSCHHHHHHHHHHHHTT-----------CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred EECchhhHhhccccccCC-----------CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 999999999988877643 278999999999999999999998766545555655544
No 190
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.50 E-value=0.00032 Score=86.99 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=40.5
Q ss_pred hhcCCCCcccCHHHHHHHHHHHHcC--CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 285 SEELIDPVIGRETEIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 285 ~~~~l~~liGr~~~i~~l~~~L~~~--~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
-|.....++||++++++|.+.|... ...-+.|+|+.|+|||+||..+++..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence 3445667999999999999998643 23346799999999999999887653
No 191
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=6.8e-05 Score=78.08 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH--cC-CCCcceeeCCC
Q 005179 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY--FG-SVRIHYLFFPS 696 (710)
Q Consensus 633 Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l--fg-~~~~li~~d~s 696 (710)
||+++++.+...++..+ . .++|||||||||||++|+++|+.. +. ....++.++.+
T Consensus 1 g~~~~~~~L~~~i~~~~----~-----~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE----G-----ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp ---CHHHHHHHHHHTCS----S-----EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred ChHHHHHHHHHHHHCCC----C-----cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 78889999888876543 1 389999999999999999999973 21 23456777765
No 192
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.49 E-value=0.00022 Score=80.65 Aligned_cols=41 Identities=29% Similarity=0.306 Sum_probs=35.1
Q ss_pred ccCHHHHHHHHHHHHcC---CCCCcEEEcCCCChHHHHHHHHHH
Q 005179 293 IGRETEIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAI 333 (710)
Q Consensus 293 iGr~~~i~~l~~~L~~~---~~~nvLL~GppG~GKT~la~~la~ 333 (710)
+||+.+++++.+.|... ...-+.|+|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 59999999999998654 234578999999999999999986
No 193
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.47 E-value=3e-05 Score=82.97 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=45.8
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCC---CCcceeeCCCC
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGS---VRIHYLFFPSP 697 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~---~~~li~~d~se 697 (710)
..++|+++.++.+...+.....+- +...++++||||||||++++++++.+... ....+.++++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~-----~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREE-----KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTC-----CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC-----CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 348888888888877665432221 12478999999999999999999987432 34566666543
No 194
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.42 E-value=0.00011 Score=76.54 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHc-CCCCcceeeCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYF-GSVRIHYLFFPS 696 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lf-g~~~~li~~d~s 696 (710)
.+++|+||||||||.||++||+.+. ..+...+.++++
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 4899999999999999999999987 554445444443
No 195
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.41 E-value=2.5e-05 Score=75.12 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=20.4
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
-.+++||+|+||||++..++..+..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3679999999999999777776643
No 196
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.39 E-value=0.00014 Score=73.57 Aligned_cols=26 Identities=31% Similarity=0.749 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH--HcC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAAC--YFG 685 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~--lfg 685 (710)
.+++||||||||||++|++||+. ++|
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l~G 132 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPFYG 132 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 48999999999999999999997 454
No 197
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.37 E-value=7.2e-05 Score=82.19 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCC--CCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGS--VRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~--~~~li~~d~se~ 698 (710)
.+++||||||||||+||++||+.+... +..++.++++++
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 478999999999999999999998543 344566665543
No 198
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.30 E-value=0.0018 Score=63.64 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=25.5
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l~~~ 338 (710)
+.+.++++.|+|||||||++-.+|..+...
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 345679999999999999999999988654
No 199
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.27 E-value=0.00059 Score=86.19 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=54.2
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh-------hc-------cccCccHHHHHHH
Q 005179 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AG-------AKERGELEARVTT 373 (710)
Q Consensus 308 ~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~-------~g-------~~~~g~~e~~l~~ 373 (710)
-..+.+++|+||||||||+||.+++...... +..+..++..... .| .......++.+..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~-------G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEI 1496 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHH
Confidence 3457789999999999999999998876442 4455555544221 01 0011233444555
Q ss_pred HHHHHHhcCCeEEEEccchhhhh
Q 005179 374 LISEIQKSGDVILFIDEVHTLIG 396 (710)
Q Consensus 374 ~~~~~~~~~~~IL~IDEid~l~~ 396 (710)
+...++...+.+||||+++.++.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGGCCC
T ss_pred HHHHHhcCCCCEEEEcChhHhcc
Confidence 55556667889999999987764
No 200
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.26 E-value=0.0096 Score=67.34 Aligned_cols=50 Identities=10% Similarity=0.047 Sum_probs=35.6
Q ss_pred HHHHHHHHHHH-HHHHHcCCCccCHHHHHHHhhhcCCchHHHHHHHhcCCHHHHHHHHHHhh
Q 005179 173 ISTKRVFEAAV-EYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (710)
Q Consensus 173 ~~~~~vl~~A~-~~a~~~g~~~I~~ehlLlall~~~~~~a~~iL~~~gv~~~~l~~~~~~~l 233 (710)
.+.+..+..+. ..+...||.|+..+.|+-...+ + ++++.+.+.+.+....
T Consensus 72 ~R~~a~~~~~l~~~~~~~Ght~~~~~~l~~~~~~--------~---l~~~~~~~~~~~~~~~ 122 (574)
T 3e1s_A 72 RRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVVH--------Y---TRVTPGQARLAVETAV 122 (574)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCEEHHHHHHHHHH--------H---HCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEeecHHHHHHHHHH--------H---hCCCHHHHHHHHHHHH
Confidence 36777788888 7788889999999987654432 2 3678777766665544
No 201
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.24 E-value=0.00018 Score=66.47 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
.++|+||+|+|||+|+++++..+...+...+.++.+++.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 789999999999999999999987655556777776654
No 202
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.20 E-value=0.0014 Score=77.76 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=36.3
Q ss_pred cccCHHHHHHHHHHHHc-CCCCCcEEEcCCCChHHHHHHHHHHH
Q 005179 292 VIGRETEIQRIIQILCR-RTKNNPILLGESGVGKTAIAEGLAIR 334 (710)
Q Consensus 292 liGr~~~i~~l~~~L~~-~~~~nvLL~GppG~GKT~la~~la~~ 334 (710)
.+||+.++++|.+.|.. ...+-+.|+|+.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 49999999999998876 33345789999999999999999853
No 203
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.13 E-value=0.00044 Score=68.20 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~ 336 (710)
.+..++|+||+|+|||++++.++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999997664
No 204
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.11 E-value=0.00069 Score=84.62 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=54.2
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh----hhh---c---cccCcc----HHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL----LMA---G---AKERGE----LEARVTTLIS 376 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~----l~~---g---~~~~g~----~e~~l~~~~~ 376 (710)
++.++|+||||||||+||++++.+..... -....++... +.. | .++.++ -|..+..++.
T Consensus 1082 g~~~l~~G~~g~GKT~la~~~~~~~~~~g-------~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~ 1154 (1706)
T 3cmw_A 1082 GRIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 1154 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhcC-------CceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHH
Confidence 34489999999999999999998764432 2222232221 110 1 122233 5777877777
Q ss_pred HHHhcCCeEEEEccchhhhhC
Q 005179 377 EIQKSGDVILFIDEVHTLIGS 397 (710)
Q Consensus 377 ~~~~~~~~IL~IDEid~l~~~ 397 (710)
.+++..++++|+|+++.|++.
T Consensus 1155 ~ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1155 LARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHTCCSEEEESCGGGCCCH
T ss_pred HHHhcCCeEEEeCchHhcCcc
Confidence 788888999999999998765
No 205
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.08 E-value=0.00025 Score=76.73 Aligned_cols=67 Identities=19% Similarity=0.151 Sum_probs=47.9
Q ss_pred CcccChHHHHHHHHHHH-HHhhcCCCCCCCCCeEEEE--EcCCCCcHHHHHHHHHHHHcCC------CCcceeeCCCCC
Q 005179 629 KRVIGQDEAVAAISRAV-KRSRVGLKDPNRPTAAMLF--CGPTGVGKTELAKSLAACYFGS------VRIHYLFFPSPF 698 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i-~~~r~gl~~p~rp~~~~Lf--~GPpGtGKT~lAkaLA~~lfg~------~~~li~~d~se~ 698 (710)
..++|.++.++.+...+ .....|... . ...+++ +||||||||+|++++++.+-.. ....+.++++..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~--~-~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGL--S-DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCB--C-CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCC--C-CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 44889989899898888 766544211 1 147888 9999999999999999987431 334566666544
No 206
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.97 E-value=0.00065 Score=67.09 Aligned_cols=27 Identities=26% Similarity=0.040 Sum_probs=22.2
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~ 338 (710)
.-++++|++|+||||++..++.++...
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346788999999999999998887543
No 207
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.92 E-value=0.0018 Score=61.14 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=22.2
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..++|+|+||+||||+++.|++.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 458899999999999999999987
No 208
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.89 E-value=0.0011 Score=68.17 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFP 695 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~ 695 (710)
..++|.||||+|||++|+.|++.+-+ ..+.++.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~---~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQG---NVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT---CCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEec
Confidence 47899999999999999999998521 3455544
No 209
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.88 E-value=0.00055 Score=67.00 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAI 333 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~ 333 (710)
+.-++|+||||+|||+++..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44578999999999999999987
No 210
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.82 E-value=0.0008 Score=65.14 Aligned_cols=32 Identities=34% Similarity=0.456 Sum_probs=25.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 651 GLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 651 gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
|...+.+|. .++|.||||+|||++|+.||+.+
T Consensus 13 ~~~~~~~~~-~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 13 GLVPRGSHM-RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp ---CCCSCC-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccCCCCCe-EEEEECCCCCCHHHHHHHHHHHh
Confidence 444455554 78999999999999999999985
No 211
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.80 E-value=0.0015 Score=65.94 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
..++|.||||+|||++|+.|++.+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999999863
No 212
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.74 E-value=0.00084 Score=65.00 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
..++|+||||||||++|++||+.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999986
No 213
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.64 E-value=0.00095 Score=63.55 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+.+++|+|+||+||||+++.|++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999988
No 214
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.64 E-value=0.0021 Score=63.79 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.2
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.-++|+||||+|||+++..++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34567899999999999999999753
No 215
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.63 E-value=0.0013 Score=63.69 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
..+.+.||+|+|||+++++||..+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3788999999999999999999986
No 216
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.61 E-value=0.0015 Score=61.48 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 005179 659 TAAMLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 659 ~~~~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
...++|.||||+|||++++.|+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 347899999999999999999986
No 217
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.61 E-value=0.0025 Score=63.46 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=22.7
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
.+..++|+||||+|||+++..++..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456799999999999999888776543
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.59 E-value=0.019 Score=62.33 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=47.3
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh-------------hc-----cccCccHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------------AG-----AKERGELEARVT 372 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~-------------~g-----~~~~g~~e~~l~ 372 (710)
+.-++++|++|+||||++..||..+... +.++..+++.... .+ .....+....+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~-------G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~ 172 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR-------GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAK 172 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHH
Confidence 3457899999999999999999988653 3344333321110 00 011223444455
Q ss_pred HHHHHHHhcCCeEEEEccchhh
Q 005179 373 TLISEIQKSGDVILFIDEVHTL 394 (710)
Q Consensus 373 ~~~~~~~~~~~~IL~IDEid~l 394 (710)
..+..+...+..+++||....+
T Consensus 173 ~al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 173 EGVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHHhCCCCEEEEECCCcc
Confidence 6667776655668999987554
No 219
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.57 E-value=0.0015 Score=62.39 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
.++|+||||||||++++.||+.++|
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6899999999999999999998444
No 220
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.53 E-value=0.012 Score=56.48 Aligned_cols=29 Identities=34% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~ 338 (710)
.+.++++++++|.||||+|-+++.+....
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~ 55 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH 55 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46789999999999999999999988654
No 221
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.49 E-value=0.0014 Score=63.39 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.7
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+..++|+|+||+||||+++.|++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35679999999999999999999988
No 222
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.46 E-value=0.002 Score=61.09 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=23.6
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.+++|+|+||+||||+++.|++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999999988
No 223
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.45 E-value=0.0059 Score=64.97 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=46.9
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh-------hcc-------ccCccHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AGA-------KERGELEARVTTLI 375 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~-------~g~-------~~~g~~e~~l~~~~ 375 (710)
.+..++|+|+||+|||+++..++..+... +..+.+++..... .|. ......++.+ ..+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~-------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l-~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA-------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQAL-EIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH-HHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC-------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHH-HHH
Confidence 34568899999999999999998877543 3344444432110 010 0012233322 333
Q ss_pred HHH-HhcCCeEEEEccchhhhh
Q 005179 376 SEI-QKSGDVILFIDEVHTLIG 396 (710)
Q Consensus 376 ~~~-~~~~~~IL~IDEid~l~~ 396 (710)
+.+ ......+||||.+..+..
T Consensus 145 ~~l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHHTTTCCSEEEEECTTTCCC
T ss_pred HHHHhcCCCCEEEEeChHHhcc
Confidence 333 335577999999999864
No 224
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.41 E-value=0.0016 Score=62.96 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.++|.||||+|||++|+.|++.+ | ...+|...+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l-g----~~~i~~d~~ 52 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC-G----YPFIEGDAL 52 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH-T----CCEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C----CEEEeCCcC
Confidence 68999999999999999999986 3 445555444
No 225
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.40 E-value=0.008 Score=59.88 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.7
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+++|+||+|+|||.++..++..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 459999999999999998887664
No 226
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.39 E-value=0.0017 Score=61.48 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.++|+||||+|||++|+.||+.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999874
No 227
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.37 E-value=0.0021 Score=60.02 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.5
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
.++|.|+||+||||+++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 228
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.36 E-value=0.0045 Score=66.57 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=47.5
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
++|...++..+...++... ... ..+|++|++|||||++|++|..........++.+||+.+.
T Consensus 139 ~ig~s~~m~~l~~~i~~~a----~~~---~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~ 200 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKIS----CAE---CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP 200 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHT----TCC---SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC
T ss_pred hhhccHHhhHHHHHHHHhc----CCC---CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCC
Confidence 5666666666666665532 111 2579999999999999999999987778899999999863
No 229
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.36 E-value=0.0038 Score=62.18 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=21.4
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~ 334 (710)
.+.-+.|+||+|+|||||++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4566899999999999999999843
No 230
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.34 E-value=0.0042 Score=65.29 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
..++|+||||+|||+++++||..+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 378999999999999999999985
No 231
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.30 E-value=0.0024 Score=60.20 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=22.3
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+++|+|+||+||||+++.|++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999988
No 232
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.30 E-value=0.0059 Score=63.51 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=27.8
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
..++|+||+|+|||+++..||+.+ +..++..|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l----------~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL----------PCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS----------CEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc----------CCcEEeccc
Confidence 358899999999999999999988 666666663
No 233
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.28 E-value=0.0028 Score=62.29 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
..+++.||||+||+|.|+.||+.|
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999984
No 234
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.28 E-value=0.0026 Score=61.52 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.+.+.||+|+|||++++.|+..+ | .+.+|...+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~-g----~~~i~~d~~ 63 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET-G----LEFAEADAF 63 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-C----CEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhh-C----CeEEccccc
Confidence 68899999999999999999987 4 455554443
No 235
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.27 E-value=0.0025 Score=66.09 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceee
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLF 693 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~ 693 (710)
+.++++||||||||+||.++|.. -|..-.++.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-LGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEe
Confidence 35799999999999999999987 3333345555
No 236
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.27 E-value=0.0055 Score=64.81 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=45.6
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh-------hccc-------cCccHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AGAK-------ERGELEARVTTLI 375 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~-------~g~~-------~~g~~e~~l~~~~ 375 (710)
.+.-++|+||||+|||+|+..++..+... +..+..++..... .|.. .....++.+ .++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l-~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQAL-EIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH-HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHH-HHH
Confidence 34568999999999999999998776543 2334444322110 0100 011233322 233
Q ss_pred HH-HHhcCCeEEEEccchhhh
Q 005179 376 SE-IQKSGDVILFIDEVHTLI 395 (710)
Q Consensus 376 ~~-~~~~~~~IL~IDEid~l~ 395 (710)
.. +....+.+|+||++..+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHHTTTCCSEEEEECGGGCC
T ss_pred HHHHhcCCCCEEEEcChHhhc
Confidence 32 334567899999999986
No 237
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.25 E-value=0.0022 Score=60.02 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=22.8
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
..+++|+|++|+||||+++.|++.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999988
No 238
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.25 E-value=0.0027 Score=63.00 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.++|.||||+|||++|+.||+.|
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999985
No 239
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.24 E-value=0.0027 Score=60.31 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=22.3
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..++|+|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999988
No 240
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.23 E-value=0.0023 Score=61.09 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.6
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~ 334 (710)
.+.+++|+|+||+||||+++.|++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999999999998
No 241
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.16 E-value=0.016 Score=55.78 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=24.9
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHHH
Q 005179 308 RRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 308 ~~~~~nvLL~GppG~GKT~la~~la~~l~ 336 (710)
...+..+.|+|++|+||||+++.|+..+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34556788999999999999999999884
No 242
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.15 E-value=0.021 Score=63.77 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=45.5
Q ss_pred eEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc---CCCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCH
Q 005179 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ 459 (710)
Q Consensus 384 ~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~ 459 (710)
.+|+|||++.++... ..++...|..+.. .-.+.+|.+|..+. .-.++..++.-|. .|.+...+.
T Consensus 345 ivvVIDE~~~L~~~~---------~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs---~d~I~~~Iran~~~RI~lrv~s~ 412 (574)
T 2iut_A 345 IVVVVDEFADMMMIV---------GKKVEELIARIAQKARAAGIHLILATQRPS---VDVITGLIKANIPTRIAFQVSSK 412 (574)
T ss_dssp EEEEESCCTTHHHHT---------CHHHHHHHHHHHHHCTTTTEEEEEEESCCC---TTTSCHHHHHTCCEEEEECCSCH
T ss_pred EEEEEeCHHHHhhhh---------hHHHHHHHHHHHHHHhhCCeEEEEEecCcc---cccccHHHHhhhccEEEEEcCCH
Confidence 689999999886531 1233444444333 33577777766643 1135677888776 677887888
Q ss_pred HHHHHHHH
Q 005179 460 EDAVRILL 467 (710)
Q Consensus 460 ~~~~~IL~ 467 (710)
.+...||-
T Consensus 413 ~Dsr~ILd 420 (574)
T 2iut_A 413 IDSRTILD 420 (574)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 87766653
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.15 E-value=0.0041 Score=59.26 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSV 687 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~ 687 (710)
..++|.|+||+|||++++.||..+-...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~ 41 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEG 41 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3688999999999999999999975433
No 244
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.14 E-value=0.0044 Score=64.74 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++|+||+|+|||+|+..||+.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3468899999999999999999987
No 245
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.14 E-value=0.005 Score=61.78 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.1
Q ss_pred CCCcEEEcCCCChHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAI 333 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~ 333 (710)
.-+++|+|.+|+|||+|+..|..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhC
Confidence 35689999999999999999864
No 246
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.13 E-value=0.0033 Score=58.98 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=22.7
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++|+|++|+||||+++.|+..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999887
No 247
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.12 E-value=0.0031 Score=58.92 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
..++|.|+||||||++|+.||+.|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999974
No 248
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.12 E-value=0.0056 Score=61.23 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
-.++|.||||+|||++|+.|++.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999875
No 249
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.11 E-value=0.0034 Score=60.09 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.++|.||||+|||++|+.||+.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999875
No 250
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.11 E-value=0.0036 Score=68.95 Aligned_cols=46 Identities=26% Similarity=0.463 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCC
Q 005179 633 GQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVR 688 (710)
Q Consensus 633 Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~ 688 (710)
+|.+|+..+...+.... +.+++.||||||||+++++++..|...+.
T Consensus 29 ~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp HHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 45566666655544311 37899999999999999999999876544
No 251
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.10 E-value=0.0027 Score=67.37 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
..+..++|+||+|+||||++++++..+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 34457899999999999999999988754
No 252
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.09 E-value=0.0068 Score=65.28 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=21.1
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.-++|+||||+|||+|+..++-..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 34567899999999999999876443
No 253
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.08 E-value=0.0029 Score=60.71 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
-++|.||||+|||++|+.||+.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999985
No 254
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.08 E-value=0.0034 Score=60.66 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
..++|.||||+|||++|+.||+.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999874
No 255
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.08 E-value=0.0027 Score=60.60 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.4
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++|+|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999988
No 256
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.08 E-value=0.009 Score=63.15 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=46.3
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhh-------cc-------ccCccHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-------GA-------KERGELEARVTTLIS 376 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~-------g~-------~~~g~~e~~l~~~~~ 376 (710)
+.-++|+||||+|||+|+..++..+... +..+++++...... |. ......++.+..+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~-------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM-------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 4457899999999999999999887542 23344444322100 00 011223333333222
Q ss_pred HHHhcCCeEEEEccchhhhh
Q 005179 377 EIQKSGDVILFIDEVHTLIG 396 (710)
Q Consensus 377 ~~~~~~~~IL~IDEid~l~~ 396 (710)
.+....+.+++||.+..++.
T Consensus 134 l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHTSCCSEEEEECTTTCCC
T ss_pred HhhhcCCCeEEehHhhhhcC
Confidence 23345677999999988764
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.05 E-value=0.0028 Score=61.46 Aligned_cols=23 Identities=39% Similarity=0.885 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.++|+||||+|||++++.|++.+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999999986
No 258
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.04 E-value=0.0038 Score=62.96 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=26.7
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeeh
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~ 354 (710)
.++|+||+|+||||+++.||..+ +..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~----------~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET----------GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----------CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC----------CCeEEeccH
Confidence 36899999999999999999988 566666653
No 259
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.01 E-value=0.012 Score=61.41 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=33.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 656 NRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 656 ~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
..+...++|+||+|+|||+++..||..+-..+...+.+|..-+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 3444689999999999999999999998766666666665544
No 260
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.00 E-value=0.011 Score=62.78 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=46.5
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh-------hccc-------cCccHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AGAK-------ERGELEARVTTLI 375 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~-------~g~~-------~~g~~e~~l~~~~ 375 (710)
.+..++|+|+||+|||+++..++..+... +..+..++..... .|.. .....+. +..++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~-~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ-ALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHH-HHHHH
Confidence 45568999999999999999999877543 3344555432110 0000 0011222 33333
Q ss_pred HHH-HhcCCeEEEEccchhhh
Q 005179 376 SEI-QKSGDVILFIDEVHTLI 395 (710)
Q Consensus 376 ~~~-~~~~~~IL~IDEid~l~ 395 (710)
..+ ......+|+||.+..+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHHHHTCCSEEEEECGGGCC
T ss_pred HHHHhccCCCEEEEcCHHHhc
Confidence 333 34567799999999886
No 261
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.99 E-value=0.0073 Score=64.43 Aligned_cols=26 Identities=42% Similarity=0.496 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
..++++||||+|||+++++||..+-|
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 47899999999999999999998644
No 262
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.99 E-value=0.0038 Score=59.57 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
..+.+.||||+|||++++.||..+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 368899999999999999999864
No 263
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=95.98 E-value=0.004 Score=67.59 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=50.1
Q ss_pred CcCCHHHHHHHHHhhhCCChhhccHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCC
Q 005179 590 AVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTG 669 (710)
Q Consensus 590 ~~v~~~di~~~~s~~~gip~~~~~~~~~~~l~~l~~~L~~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpG 669 (710)
..++.+++.....-+. + ..+..+.+.+.. |+||++++..+.-++ .|-....|--.++|+.|+||
T Consensus 186 ~~~t~ed~~~i~~l~~---------~--~~~~~l~~sIap-I~G~e~vK~aLll~L----~GG~~k~rgdihVLL~G~PG 249 (506)
T 3f8t_A 186 VHPDPAELEEFRELAD---------K--DPLTTFARAIAP-LPGAEEVGKMLALQL----FSCVGKNSERLHVLLAGYPV 249 (506)
T ss_dssp CCCCHHHHHHHHHHHH---------S--CHHHHHHHHHCC-STTCHHHHHHHHHHH----TTCCSSGGGCCCEEEESCHH
T ss_pred CCCCHHHHHHHHHHHH---------H--HHHHHHHHHhcc-cCCCHHHHHHHHHHH----cCCccccCCceeEEEECCCC
Confidence 4567777655443221 1 234577888999 999999877765543 22111111112799999999
Q ss_pred CcHHHHHHHH-HHH
Q 005179 670 VGKTELAKSL-AAC 682 (710)
Q Consensus 670 tGKT~lAkaL-A~~ 682 (710)
| ||+|||++ ++.
T Consensus 250 t-KS~Lar~i~~~i 262 (506)
T 3f8t_A 250 V-CSEILHHVLDHL 262 (506)
T ss_dssp H-HHHHHHHHHHHT
T ss_pred h-HHHHHHHHHHHh
Confidence 9 99999999 665
No 264
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.98 E-value=0.0044 Score=58.00 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=22.2
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..++|+|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999988
No 265
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.97 E-value=0.0052 Score=59.36 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.8
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
...++|+|++|+||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999987
No 266
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.96 E-value=0.006 Score=59.89 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.6
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+.-+.|+||+|+||||+++.++..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999998754
No 267
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.96 E-value=0.005 Score=59.74 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
-+.|.|+||+|||++|+.||+.|
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999975
No 268
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.94 E-value=0.011 Score=61.70 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=24.2
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 655 PNRPTAAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 655 p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
..+|. .+.+.||+|||||++++.|+..+-
T Consensus 89 ~~~p~-iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPY-IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCE-EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCE-EEEEECCCCCCHHHHHHHHHHHhc
Confidence 33443 788999999999999999999874
No 269
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.92 E-value=0.0043 Score=59.91 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++|+|+||+||||+++.|++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999999988
No 270
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.92 E-value=0.0043 Score=60.87 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++|+|+||+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999999988
No 271
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.89 E-value=0.0044 Score=59.30 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+..++|.|+||+||||+++.|++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999999988
No 272
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.89 E-value=0.0064 Score=57.85 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=22.0
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~ 336 (710)
.++|.|+||+||||+++.|++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.89 E-value=0.0054 Score=57.73 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHH------------HHHHHHcCCC
Q 005179 661 AMLFCGPTGVGKTELAK------------SLAACYFGSV 687 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAk------------aLA~~lfg~~ 687 (710)
-+.++||+|+|||+|++ .+...+|++.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~ 49 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDE 49 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSST
T ss_pred EEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcc
Confidence 67899999999999999 7777777654
No 274
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.88 E-value=0.0087 Score=57.86 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
-.+.+.||+|+|||++++.|+..+-.....++.+++.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3688999999999999999999874333334444333
No 275
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.88 E-value=0.0076 Score=63.10 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=35.7
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.++|.++.++.+...+.. | ..++++||+|||||+|++.+++.+
T Consensus 13 ~~~gR~~el~~L~~~l~~---~--------~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN---Y--------PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH---C--------SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred hcCChHHHHHHHHHHHhc---C--------CeEEEECCCcCCHHHHHHHHHHHc
Confidence 378888888888777653 2 278999999999999999999884
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.85 E-value=0.0042 Score=57.91 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.6
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
.++|+|+||+||||+++.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999999 665
No 277
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.85 E-value=0.0074 Score=66.31 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=23.6
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
.+.-++|.|+||+|||+++..++..+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3455789999999999999999988754
No 278
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.84 E-value=0.0043 Score=62.06 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
..+++.||||+|||++++.||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999774
No 279
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.83 E-value=0.022 Score=58.93 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcce
Q 005179 659 TAAMLFCGPTGVGKTELAKSLAACYFGSVRIHY 691 (710)
Q Consensus 659 ~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li 691 (710)
...+.|+||+|+|||++++.||..+-.+...+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~ 132 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 132 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 357889999999999999999999765444333
No 280
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.83 E-value=0.011 Score=61.82 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=22.5
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+..++|+||||+|||+++..++..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 45568999999999999999998765
No 281
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.81 E-value=0.046 Score=59.28 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 659 TAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 659 ~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
...++|+||+|+|||+++..||..|-..+.....++...|
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 3589999999999999999999998876666665665444
No 282
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.79 E-value=0.0063 Score=59.19 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
..+.+.||+|+|||+|++.|+..+-
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3678999999999999999999986
No 283
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.79 E-value=0.014 Score=57.99 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=20.8
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~ 334 (710)
.+.-++|+|+||+|||+++..++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3456799999999999999887754
No 284
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.77 E-value=0.0061 Score=59.21 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
-+.|.||||+|||++|+.||+.|
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 285
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.76 E-value=0.015 Score=59.94 Aligned_cols=93 Identities=18% Similarity=0.219 Sum_probs=53.6
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhc----cccCccHHHHHHHHHHHHHhcCCeEEEE
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG----AKERGELEARVTTLISEIQKSGDVILFI 388 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g----~~~~g~~e~~l~~~~~~~~~~~~~IL~I 388 (710)
-++|+||+|+|||+|+..||+.+ +..+++.|.-.+..+ +... ..++ .... + --||
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~qvY~~~~igTakp-~~~E--------~~~v-~-hhli 70 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL----------PVELISVDSALIYKGMDIGTAKP-NAEE--------LLAA-P-HRLL 70 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS----------CEEEEECCTTTTBTTCCTTTTCC-CHHH--------HHHS-C-EETS
T ss_pred EEEEECCCccCHHHHHHHHHHhC----------CCcEEecccccccccccccCCCC-CHHH--------HcCC-C-EEEe
Confidence 36789999999999999999987 566777664333221 1111 1111 1111 1 2334
Q ss_pred ccch--hhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChH
Q 005179 389 DEVH--TLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433 (710)
Q Consensus 389 DEid--~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~ 433 (710)
|.++ .....+ ....++...+....++|++.++.-.|.-
T Consensus 71 d~~~~~e~~s~~-------~f~~~a~~~i~~i~~~g~~pilVGGTgl 110 (316)
T 3foz_A 71 DIRDPSQAYSAA-------DFRRDALAEMADITAAGRIPLLVGGTML 110 (316)
T ss_dssp SCBCTTSCCCHH-------HHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred ccCCccccccHH-------HHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 4333 111111 3356677777788888888766666653
No 286
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.75 E-value=0.015 Score=59.93 Aligned_cols=97 Identities=21% Similarity=0.180 Sum_probs=53.2
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhhhccccCccHHHHHHHHHHHHHhcCCeEEEEccch
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVH 392 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~~g~~~~g~~e~~l~~~~~~~~~~~~~IL~IDEid 392 (710)
-++|.||+|+|||+|+..||+.+ +..+++.|.-.+..+.. .|.-.-.. .+.. .-+ --|||.++
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~QvYr~~~-igTakp~~----~E~~-gvp-hhlid~~~ 67 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL----------NGEVISGDSMQVYRGMD-IGTAKITA----EEMD-GVP-HHLIDIKD 67 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT----------TEEEEECCGGGGBTTCC-TTTTCCCH----HHHT-TCC-EESSSCBC
T ss_pred EEEEECCCcCCHHHHHHHHHHhC----------ccceeecCcccceeeee-ecCCCCCH----HHHc-CCC-EEEeccCC
Confidence 46789999999999999999987 55666665432221111 01000000 0111 112 23444333
Q ss_pred h--hhhCCCCCCCCCCChHhHHHhhcccccCCCeEEEEccChH
Q 005179 393 T--LIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433 (710)
Q Consensus 393 ~--l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI~att~~ 433 (710)
- .+..+ ....++...+....++|++.||.-.|.-
T Consensus 68 ~~e~~s~~-------~F~~~a~~~i~~i~~~gk~pIlVGGTgl 103 (322)
T 3exa_A 68 PSESFSVA-------DFQDLATPLITEIHERGRLPFLVGGTGL 103 (322)
T ss_dssp TTSCCCHH-------HHHHHHHHHHHHHHHTTCEEEEESCCHH
T ss_pred hhhhccHH-------HHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 2 11111 3355677777777888888777666653
No 287
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.75 E-value=0.0042 Score=60.69 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.2
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
+++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 288
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.71 E-value=0.0049 Score=58.64 Aligned_cols=25 Identities=20% Similarity=0.233 Sum_probs=22.6
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~ 336 (710)
..++|.|+||+||||+++.|++.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999884
No 289
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.70 E-value=0.0098 Score=55.28 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVR 688 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~ 688 (710)
.+.|.||.|+|||+|.|+|+..+ ++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 68899999999999999999998 6544
No 290
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.69 E-value=0.0064 Score=60.33 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.+.+.||||+|||++|+.||+.|
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999774
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.68 E-value=0.0061 Score=58.08 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.9
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..++|.|+||+||||+++.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999987
No 292
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.68 E-value=0.015 Score=57.75 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.7
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIR 334 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~ 334 (710)
..+++|+|++|+|||+|+..|...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 356899999999999999998753
No 293
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.67 E-value=0.0054 Score=58.22 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=22.1
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..++|+|+||+||||+++.|++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987
No 294
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.67 E-value=0.0065 Score=59.23 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
.++|.||||+|||++++.|++.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 678999999999999999999876
No 295
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.67 E-value=0.0059 Score=59.59 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.3
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
+++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 296
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.67 E-value=0.0061 Score=56.77 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=21.5
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
.++|+|++|+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 297
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.67 E-value=0.022 Score=59.58 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHcCCCCc
Q 005179 659 TAAMLFCGPTGVGKTELAKSLAACYFGSVRI 689 (710)
Q Consensus 659 ~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~ 689 (710)
...+.|+||+|+|||++++.||..+-.....
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~ 159 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFS 159 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence 3578999999999999999999987554443
No 298
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.64 E-value=0.0046 Score=59.41 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
+++|.||||+|||+||..|++..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999999999999874
No 299
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.64 E-value=0.018 Score=58.05 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.8
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
..++|+|+||+||||+++.|++.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45889999999999999999998643
No 300
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.64 E-value=0.0067 Score=60.15 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+.+++|.|+||+||||+++.|++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999988
No 301
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.63 E-value=0.0099 Score=65.12 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
+.-++|.|+||+|||+++..++..+..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 344788999999999999999988754
No 302
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.63 E-value=0.0059 Score=58.50 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.7
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++|+|+||+||||+++.|++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999988
No 303
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.62 E-value=0.011 Score=59.01 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+..++|+|+||+||||+++.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999999887
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.62 E-value=0.0076 Score=58.15 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=23.3
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
..+..++|+|++|+||||+++.|+..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345678899999999999999999887
No 305
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.60 E-value=0.014 Score=58.77 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=21.8
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..++|+|+||+||||+++.|+..+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999887
No 306
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.60 E-value=0.0057 Score=60.07 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=23.1
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999988
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.59 E-value=0.007 Score=56.84 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.7
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..++|+|++|+||||+++.|+..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 457899999999999999999876
No 308
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.58 E-value=0.02 Score=61.05 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=44.0
Q ss_pred ccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCCC
Q 005179 631 VIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPFN 699 (710)
Q Consensus 631 v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~~ 699 (710)
++|+..++..+...+...... + ..+|++|++||||+.+|+++...-.... .++.+|++.+.
T Consensus 131 ~ig~s~~~~~~~~~~~~~a~~--~-----~~vli~GesGtGKe~lAr~ih~~s~r~~-~fv~vnc~~~~ 191 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIAKS--K-----APVLITGESGTGKEIVARLIHRYSGRKG-AFVDLNCASIP 191 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHHTS--C-----SCEEEECCTTSSHHHHHHHHHHHHCCCS-CEEEEESSSSC
T ss_pred ccccchHHHHHHhhhhhhhcc--c-----hhheEEeCCCchHHHHHHHHHHhccccC-CcEEEEcccCC
Confidence 556666666666555444311 1 2689999999999999999998764444 49999999874
No 309
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.57 E-value=0.0073 Score=60.68 Aligned_cols=40 Identities=28% Similarity=0.367 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 636 EAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 636 ~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.+++.+...+.....| ..+.|.||+|+|||++++.||+.+
T Consensus 33 ~~l~~~~~~i~~~l~g--------~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNG--------RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHHHTTHHHHTT--------CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCC--------CEEEEECCCCCCHHHHHHHHHHhc
Confidence 4555565555442212 268999999999999999999975
No 310
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.56 E-value=0.0058 Score=60.29 Aligned_cols=25 Identities=16% Similarity=0.453 Sum_probs=22.6
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++|.|+||+||||+++.|++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999999987
No 311
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.56 E-value=0.0077 Score=63.21 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=39.0
Q ss_pred cccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 630 RVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 630 ~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.++|.++.++.+.. +.. ..++++||+|+|||+|++.+++.+-. ..+.+++..+
T Consensus 14 ~~~gR~~el~~L~~-l~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~~~~ 66 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA------------PITLVLGLRRTGKSSIIKIGINELNL---PYIYLDLRKF 66 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS------------SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEGGGG
T ss_pred HhcChHHHHHHHHH-hcC------------CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEchhh
Confidence 37787777777655 321 27899999999999999999998632 3566776654
No 312
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.56 E-value=0.0054 Score=64.05 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
.+++.||||||||+||..||+.+-
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 689999999999999999999853
No 313
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.56 E-value=0.0066 Score=58.85 Aligned_cols=34 Identities=35% Similarity=0.354 Sum_probs=25.5
Q ss_pred cCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 650 VGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 650 ~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.|+-....+...+.+.||||+|||++|+.|++.+
T Consensus 12 ~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 12 SGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp --CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3554444444578899999999999999999874
No 314
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.54 E-value=0.0066 Score=58.08 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.5
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
+.++|+||+|+|||||++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998765
No 315
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.52 E-value=0.023 Score=58.55 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcC-CCCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFG-SVRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg-~~~~li~~d~se~ 698 (710)
..++|+||+|+|||+++..||..+-. .+.....++...+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 48899999999999999999999863 4444555554443
No 316
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.51 E-value=0.0073 Score=57.41 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.0
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..++|+|+||+||||+++.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999988
No 317
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.49 E-value=0.0067 Score=59.43 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=22.3
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..++|.|+||+||||+++.|++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999988
No 318
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.48 E-value=0.0068 Score=59.48 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFF 694 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d 694 (710)
..++++||||+|||+|++.++..+-......+-++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 36889999999999999999976543333333333
No 319
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.48 E-value=0.016 Score=60.09 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCccee
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYL 692 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~ 692 (710)
..+.++||+|||||++++.||..+-.+......
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l 135 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 135 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 478899999999999999999998665444333
No 320
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.46 E-value=0.0092 Score=58.09 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.3
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
.++|.||||+||+|.++.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999988
No 321
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.42 E-value=0.022 Score=58.52 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
..+.+.||+|+|||++|+.|+..+-.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 37889999999999999999998743
No 322
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.42 E-value=0.042 Score=59.54 Aligned_cols=27 Identities=33% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~ 338 (710)
..++++|++|+||||++..||..+...
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 346888999999999999999888653
No 323
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.42 E-value=0.0055 Score=58.43 Aligned_cols=25 Identities=44% Similarity=0.508 Sum_probs=21.5
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~ 334 (710)
.+..++|+||+|+||||+++.|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456889999999999999999875
No 324
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.42 E-value=0.025 Score=62.13 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcce
Q 005179 658 PTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHY 691 (710)
Q Consensus 658 p~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li 691 (710)
+...++|+||+|+|||++++.||..+-.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 3357899999999999999999998765444333
No 325
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.41 E-value=0.036 Score=53.85 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=25.3
Q ss_pred HcCCCCCcEEEcCCCChHHHHHHHHHHHHH
Q 005179 307 CRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 307 ~~~~~~nvLL~GppG~GKT~la~~la~~l~ 336 (710)
....+..++|.|++|+||||+++.|+..+.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344556788999999999999999999884
No 326
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.41 E-value=0.0085 Score=61.71 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
.++++||||+|||+||..||+.+-
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCccCHHHHHHHHHHhCC
Confidence 678999999999999999999843
No 327
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.39 E-value=0.023 Score=59.89 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.-++|+||||+|||+++..++...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34457899999999999999998764
No 328
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.37 E-value=0.0096 Score=56.60 Aligned_cols=27 Identities=37% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
+..++|+|++|+||||+++.|+..+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 445789999999999999999998843
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.36 E-value=0.0074 Score=58.23 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..++|+|++|+||||+++.|++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999887
No 330
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.35 E-value=0.0081 Score=58.17 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+..++|+||||+||||+++.|+..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999999876
No 331
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.35 E-value=0.0075 Score=58.86 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=21.4
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
+++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 332
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.34 E-value=0.01 Score=57.22 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.+.|+||+|+|||+|++.|++.+
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 67899999999999999999874
No 333
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.32 E-value=0.0074 Score=56.73 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.5
Q ss_pred CcEEEcCCCChHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAI 333 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~ 333 (710)
.++|.|+||+||||+++.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999998
No 334
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.31 E-value=0.041 Score=62.68 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.2
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
...+++.|+||||||+++..+...+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999988877753
No 335
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.30 E-value=0.011 Score=59.72 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=24.5
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHHH
Q 005179 308 RRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 308 ~~~~~nvLL~GppG~GKT~la~~la~~l~ 336 (710)
...+..++|+||+|+||||+++.++..+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 34456789999999999999999998774
No 336
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.29 E-value=0.041 Score=61.69 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=37.7
Q ss_pred hhhHHhhhhcCCC-CcccCHHHHHHHHHHH--HcCCCCCcEEEcCCCChHHHHHHHHHHHHH
Q 005179 278 VDLTARASEELID-PVIGRETEIQRIIQIL--CRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 278 ~~l~~~~~~~~l~-~liGr~~~i~~l~~~L--~~~~~~nvLL~GppG~GKT~la~~la~~l~ 336 (710)
+.+.+.++.|.-. ....+.+..+.+.... ....+..+.|+|++|+||||+++.|+..+.
T Consensus 333 t~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 333 EEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3455556666543 2333444333333322 223456789999999999999999999884
No 337
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.28 E-value=0.013 Score=65.32 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.++++||+|+|||++.++|+..+-.+....+.-|-.|+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~ 299 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREI 299 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccc
Confidence 68999999999999999999988655554444455554
No 338
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.26 E-value=0.015 Score=60.16 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 658 PTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 658 p~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
+...++++||+|+|||+++..||..+-..+.....++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 345789999999999999999999876544444444433
No 339
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.23 E-value=0.012 Score=59.03 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=23.6
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++|+|++|+||||+++.|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999988
No 340
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.23 E-value=0.013 Score=61.59 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHH----cCCCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 296 ETEIQRIIQILC----RRTKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 296 ~~~i~~l~~~L~----~~~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++.++..+. .....+++|+|++|+||||+++.|+..+
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 334444444443 2334468999999999999999999987
No 341
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.22 E-value=0.012 Score=57.82 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.0
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
-++|.||||+||+|.++.|++.+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999988
No 342
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.19 E-value=0.014 Score=57.71 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
-+.|.||||+|||++++.|++.|-.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 6789999999999999999999754
No 343
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.19 E-value=0.059 Score=56.94 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcce
Q 005179 658 PTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHY 691 (710)
Q Consensus 658 p~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li 691 (710)
+...++|+||+|+|||++++.||..+-.....+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~ 189 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 189 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence 3357899999999999999999999765444333
No 344
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.18 E-value=0.013 Score=59.23 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
+.++++||+|+|||++.++|+..+-.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCC
Confidence 57899999999999999999998743
No 345
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.17 E-value=0.0087 Score=61.48 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++|+||||+||||+++.|+..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999876
No 346
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.16 E-value=0.0089 Score=57.30 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.7
Q ss_pred CcEEEcCCCChHH-HHHHHHHHHHHh
Q 005179 313 NPILLGESGVGKT-AIAEGLAIRIVQ 337 (710)
Q Consensus 313 nvLL~GppG~GKT-~la~~la~~l~~ 337 (710)
=.+++||.|+||| +|++++.+....
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 3578999999999 888888877654
No 347
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.16 E-value=0.0073 Score=57.05 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=18.4
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++|+|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3458899999999999999999887
No 348
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.13 E-value=0.01 Score=57.67 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.+.|.||+|+|||+|.++|+..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999999986
No 349
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.09 E-value=0.012 Score=57.36 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=26.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
..++++||||+|||++++.+|. - .....+-++..+
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~--~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-L--SGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-H--HCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHH-H--cCCcEEEEECCC
Confidence 3789999999999999999998 2 233445555443
No 350
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.08 E-value=0.018 Score=59.75 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHc--CCCCcceeeCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYF--GSVRIHYLFFPSP 697 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lf--g~~~~li~~d~se 697 (710)
..+.+.||+|+|||+|++.|+..+- .+......+++..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 3678999999999999999999875 3333344444443
No 351
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.08 E-value=0.017 Score=61.03 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=22.4
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.-+.|+||+|+|||+|++.++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44557899999999999999998765
No 352
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.08 E-value=0.013 Score=55.33 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSV 687 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~ 687 (710)
+-.+++||+|+|||+|.+||.-.|++..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~~~ 54 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGGLS 54 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTCCC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999988754
No 353
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.06 E-value=0.03 Score=58.28 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.7
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
+.-++|.|+||+|||+++..++..+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 445789999999999999999977654
No 354
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.06 E-value=0.015 Score=57.65 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
..++++||||+|||++|..+|..+-..+...+-++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3789999999999999998887654434444444433
No 355
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.05 E-value=0.013 Score=57.75 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.3
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999988
No 356
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.05 E-value=0.015 Score=65.83 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFF 694 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d 694 (710)
.++|.|+||+|||++|++||+.|+..+...+.+|
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 7899999999999999999999864333344443
No 357
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.03 E-value=0.011 Score=58.73 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
..++++||+|+|||+|++.|+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 36889999999999999999943
No 358
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.03 E-value=0.015 Score=73.66 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.+++||||||||||+||.++|......+...+-++..+.
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 489999999999999999999987665555666665554
No 359
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.01 E-value=0.012 Score=62.92 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=25.2
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 308 ~~~~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
...+..++|+||+|+||||+++.++..+..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 345567899999999999999999988753
No 360
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.01 E-value=0.011 Score=57.94 Aligned_cols=23 Identities=43% Similarity=0.910 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.+.|+||+|+|||+|++.|+..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999976
No 361
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.99 E-value=0.01 Score=56.17 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=21.7
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+.-++|+||+|+|||||++.|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3457899999999999999998865
No 362
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.97 E-value=0.036 Score=59.15 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.2
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
-++|.||+|+|||+|+..|++.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 36789999999999999999988
No 363
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.95 E-value=0.04 Score=57.02 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.7
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
.-++|+|++|+||||++..||..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 34789999999999999999988854
No 364
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.94 E-value=0.012 Score=57.66 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
..+.++||+|+|||+|++.|+..+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999998643
No 365
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.94 E-value=0.14 Score=48.90 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=18.6
Q ss_pred CCCcEEEcCCCChHHHHH-HHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIA-EGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la-~~la~~l 335 (710)
+.++++.+|+|+|||..+ ..+...+
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 468999999999999764 3444444
No 366
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.94 E-value=0.016 Score=55.67 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=21.4
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
.++|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 37899999999999999999988
No 367
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.91 E-value=0.012 Score=56.79 Aligned_cols=24 Identities=29% Similarity=0.158 Sum_probs=22.0
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..++|.|+||+||||+++.|++.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999988
No 368
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.89 E-value=0.019 Score=56.73 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH-cC-----CCCcceeeCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACY-FG-----SVRIHYLFFPSP 697 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~l-fg-----~~~~li~~d~se 697 (710)
..++++||||+|||+|++.+|... .. .....+.++..+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 378999999999999999999863 21 134456666544
No 369
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.88 E-value=0.02 Score=60.48 Aligned_cols=38 Identities=18% Similarity=0.032 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
..++++||||||||+|+..+|..+-......+-+|..+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 47899999999999999999988654444455555544
No 370
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.87 E-value=0.021 Score=54.26 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.7
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHh
Q 005179 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~~ 337 (710)
++|.|++|+||||+++.|++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998843
No 371
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.84 E-value=0.018 Score=59.98 Aligned_cols=112 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccC----------------ceEEEeehhhh---------------
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS----------------KRIMSLDMGLL--------------- 357 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~----------------~~v~~ld~~~l--------------- 357 (710)
+.+..++|+|+||+|||+++..++... .+.. ..+++++....
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~-------~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~ 168 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNL-------QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGI 168 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT-------TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-------hccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCC
Q ss_pred ----------hhccccCccHHHHHHHHHHHHHh-cCCeEEEEccchhhhhCCCCCCCCCCCh------HhHHHhhccccc
Q 005179 358 ----------MAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTG------LDISNLLKPSLG 420 (710)
Q Consensus 358 ----------~~g~~~~g~~e~~l~~~~~~~~~-~~~~IL~IDEid~l~~~~~~~~~~~~~~------~~~~~~L~~~l~ 420 (710)
+.......+....+..+...+.. .+..+|+||.+..+......+.+ ... ..+...|+.+..
T Consensus 169 ~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~--~~~~r~~~~~~~~~~L~~la~ 246 (322)
T 2i1q_A 169 DGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRG--KLAERQQKLGRHMATLNKLAD 246 (322)
T ss_dssp CHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCeEEEEc
Q 005179 421 RGELQCIAS 429 (710)
Q Consensus 421 ~~~v~vI~a 429 (710)
+.++.+|.+
T Consensus 247 ~~~~~vi~~ 255 (322)
T 2i1q_A 247 LFNCVVLVT 255 (322)
T ss_dssp HTTCEEEEE
T ss_pred HhCCEEEEE
No 372
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.81 E-value=0.19 Score=54.31 Aligned_cols=41 Identities=29% Similarity=0.306 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 658 PTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 658 p~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
+...++|+||+|+|||+++..||..+-........+|..-+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 34578899999999999999999998776666666666544
No 373
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.80 E-value=0.016 Score=58.20 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCC------CCcceeeCCCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGS------VRIHYLFFPSPF 698 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~------~~~li~~d~se~ 698 (710)
.+.+.||+|+|||++|+.||+.| |- ....+.+++..|
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l-g~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL-GQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-TGGGSCGGGCSEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-hhhcccccCCceEEEecCcc
Confidence 68899999999999999999974 31 122345666655
No 374
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.80 E-value=0.0093 Score=57.30 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=21.1
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~~~ 338 (710)
.+++||.|+||||.+..++.++...
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~ 35 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIA 35 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC
Confidence 5788999999999999888887543
No 375
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.79 E-value=0.038 Score=53.27 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcC---CCCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 296 ETEIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 296 ~~~i~~l~~~L~~~---~~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
++.++.+.+.+... .+.-+.|+|++|+||||+++.|+..+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44566666655432 2233678999999999999999988743
No 376
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.79 E-value=0.014 Score=56.25 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.2
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.|+|++|+||||+++.|+. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 6
No 377
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.77 E-value=0.014 Score=56.55 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~ 336 (710)
+..++|+|++|+||||+++.|++.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999874
No 378
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.76 E-value=0.026 Score=61.16 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=29.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 659 TAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 659 ~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
...++|+||+|+|||+++..||..+-..+.....++..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 35899999999999999999999886655555444443
No 379
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.75 E-value=0.014 Score=56.49 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
+..++|+|++|+||||+++.|++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999998743
No 380
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.74 E-value=0.017 Score=56.56 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..+.|+|++|+||||+++.|+..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999887
No 381
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.74 E-value=0.016 Score=55.87 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.9
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..+.|+||+|+|||||++.|+..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998876
No 382
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.73 E-value=0.03 Score=60.87 Aligned_cols=37 Identities=27% Similarity=0.220 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
..++|+||||+|||+++..||..+-..+.....+|+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4799999999999999999999875433444545544
No 383
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.72 E-value=0.012 Score=57.32 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.2
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.-++|+||+|+||||+++.|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34457899999999999999998865
No 384
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.70 E-value=0.018 Score=54.90 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.2
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~~~ 338 (710)
++|.|++|+||||+++.|++.+...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6799999999999999999988543
No 385
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.69 E-value=0.019 Score=57.70 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
.+.+.||+|+|||++++.||+.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999955
No 386
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.69 E-value=0.021 Score=60.51 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCC--CCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGS--VRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~--~~~li~~d~se~ 698 (710)
+.+++.||+|+|||++.++|+..+-.. +..++.-|--++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~ 164 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF 164 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh
Confidence 578999999999999999999987643 333344444444
No 387
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.64 E-value=0.016 Score=56.26 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHHHc--CCCCCcEEEcCCCChHHHHHHHHHHHHH
Q 005179 298 EIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 298 ~i~~l~~~L~~--~~~~nvLL~GppG~GKT~la~~la~~l~ 336 (710)
.++++.+.+.. ..+.-+.|+||+|+|||||++.|+..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33444444332 2334567999999999999999999885
No 388
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.64 E-value=0.082 Score=50.88 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=20.8
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+.++++.+|+|+|||.++..++...
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999887776544
No 389
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.62 E-value=0.026 Score=53.12 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
+..++|+|++|+||||+++.|+..+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445789999999999999999998743
No 390
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.59 E-value=0.017 Score=57.73 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.8
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..+.|+||+|+||||+++.|++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999887
No 391
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.57 E-value=0.028 Score=58.85 Aligned_cols=38 Identities=29% Similarity=0.347 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
.++++||+|+|||+|.++|+..+-.++..+..-+..++
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~ 210 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI 210 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc
Confidence 78999999999999999999987665544433333343
No 392
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.57 E-value=0.031 Score=60.46 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcce
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHY 691 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li 691 (710)
+.+++.||+|+|||++.++|+..+-.....++
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~ 199 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNIL 199 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence 56899999999999999999999866544333
No 393
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.57 E-value=0.093 Score=55.44 Aligned_cols=26 Identities=27% Similarity=0.532 Sum_probs=22.8
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
..+.|+|+||+||||++..|+..+..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999988754
No 394
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.56 E-value=0.015 Score=60.88 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.2
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.+++|+||+|+||||+++.|+..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 395
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.54 E-value=0.018 Score=62.44 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
-++++||||+|||++|+.|++.+ ....++..++
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~ 292 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTL 292 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchH
Confidence 78999999999999999999874 2555665554
No 396
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.54 E-value=0.02 Score=59.85 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.4
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
.++|.||+|+|||+++..|++.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 47899999999999999999988
No 397
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.51 E-value=0.014 Score=56.08 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.3
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++|.|++|+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4468899999999999999999876
No 398
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.51 E-value=0.022 Score=54.70 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=21.1
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.|+|++|+||||+++.|++.+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47799999999999999999987
No 399
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.49 E-value=0.11 Score=57.32 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=43.3
Q ss_pred eEEEEccchhhhhCCCCCCCCCCChHhHHHhhccccc---CCCeEEEEccChHHHHhhhhccHHHHcccc-ceEecCCCH
Q 005179 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ 459 (710)
Q Consensus 384 ~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~att~~~~~~~~~~d~aL~~Rf~-~I~v~~Ps~ 459 (710)
.+|+|||++.++... ..++.+.|..+.. .-.+.+|.+|.... .-.++..++..|. .|-+...+.
T Consensus 299 ivlvIDE~~~ll~~~---------~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~---~dvl~~~i~~n~~~RI~lrv~s~ 366 (512)
T 2ius_A 299 IVVLVDEFADLMMTV---------GKKVEELIARLAQKARAAGIHLVLATQRPS---VDVITGLIKANIPTRIAFTVSSK 366 (512)
T ss_dssp EEEEEETHHHHHHHH---------HHHHHHHHHHHHHHCGGGTEEEEEEESCCC---TTTSCHHHHHHCCEEEEECCSSH
T ss_pred EEEEEeCHHHHHhhh---------hHHHHHHHHHHHHHhhhCCcEEEEEecCCc---cccccHHHHhhcCCeEEEEcCCH
Confidence 589999998886421 1233344433332 22466666665542 1135667777775 678888888
Q ss_pred HHHHHHHH
Q 005179 460 EDAVRILL 467 (710)
Q Consensus 460 ~~~~~IL~ 467 (710)
.+...|+.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88776664
No 400
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.49 E-value=0.019 Score=55.39 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.5
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.-++|+||+|+|||||++.|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44567899999999999999999775
No 401
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.49 E-value=0.025 Score=56.00 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.+.+.||+|+|||++++.||+.|
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68899999999999999999864
No 402
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.45 E-value=0.062 Score=58.55 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=23.1
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~ 336 (710)
.+..++|+|++|+|||+|+..++....
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 345689999999999999999987764
No 403
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.45 E-value=0.072 Score=58.92 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeC
Q 005179 658 PTAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFF 694 (710)
Q Consensus 658 p~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d 694 (710)
+...++|+|+||||||+++..||..+-..+.....++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3458999999999999999999988753333333333
No 404
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.44 E-value=0.025 Score=60.35 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
+.++++||+|+|||++.++|+..+-..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 578999999999999999999987543
No 405
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.42 E-value=0.019 Score=56.35 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
-+.+.||+|+|||+|.++|+..+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 67899999999999999999985
No 406
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.39 E-value=0.025 Score=59.86 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
..++++||||+|||+||..+|..+-..+...+-+|..+
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 37899999999999999999987654444566666544
No 407
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.39 E-value=0.047 Score=56.33 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=45.1
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhhhh-------hccc-------cCccHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AGAK-------ERGELEARVTTLISEI 378 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~l~-------~g~~-------~~g~~e~~l~~~~~~~ 378 (710)
-++|+||||+|||+|+..++....... .+..+.++|...-. .|.. .....++..-.+++.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 468999999999999888776664320 02344445432111 0000 0112333302233333
Q ss_pred ---HhcCCeEEEEccchhhhh
Q 005179 379 ---QKSGDVILFIDEVHTLIG 396 (710)
Q Consensus 379 ---~~~~~~IL~IDEid~l~~ 396 (710)
+...+.+|+||=|..+..
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 455689999999999974
No 408
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.38 E-value=0.03 Score=57.05 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
.++++||||+|||+|++.+|..+-
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999997654
No 409
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.37 E-value=0.25 Score=48.75 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=16.1
Q ss_pred CCCcEEEcCCCChHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAE 329 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~ 329 (710)
+.++++.+|+|+|||....
T Consensus 66 g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHH
Confidence 4689999999999997643
No 410
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.36 E-value=0.021 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.3
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~ 336 (710)
-+.|+||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999999999999999998763
No 411
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.35 E-value=0.013 Score=57.80 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=15.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH-HHH
Q 005179 661 AMLFCGPTGVGKTELAKSLA-ACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA-~~l 683 (710)
.+.|.||+|+|||++++.|+ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 57899999999999999999 764
No 412
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.35 E-value=0.1 Score=57.78 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
..++|+|++|+||||++..|+..+..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999988854
No 413
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.34 E-value=0.065 Score=55.18 Aligned_cols=40 Identities=25% Similarity=0.204 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 659 TAAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 659 ~~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
...++++||+|+|||+++..||..+-..+.....+|...+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3478899999999999999999998655555666665544
No 414
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.34 E-value=0.019 Score=54.63 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.5
Q ss_pred CcEEEcCCCChHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIR 334 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~ 334 (710)
.++|+||+|+||||+++.|+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 3689999999999999999863
No 415
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.31 E-value=0.024 Score=58.02 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAA 681 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~ 681 (710)
.+.+.||+|+|||++|+.|++
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999995
No 416
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.31 E-value=0.025 Score=56.09 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..+.|.||+|+||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999999988
No 417
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.30 E-value=0.025 Score=54.48 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.4
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.|.|++|+||||+++.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999988
No 418
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.29 E-value=0.028 Score=59.38 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
..++++||||+|||+||..+|..+-..+...+-++..+
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 36899999999999999999977654444455555543
No 419
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.28 E-value=0.049 Score=59.18 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHcCC-CCcceeeCCCCC
Q 005179 657 RPTAAMLFCGPTGVGKTELAKSLAACYFGS-VRIHYLFFPSPF 698 (710)
Q Consensus 657 rp~~~~Lf~GPpGtGKT~lAkaLA~~lfg~-~~~li~~d~se~ 698 (710)
++...++|+|++|+|||+++-.||..|-.. +.....+|+..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 445689999999999999999999998655 566666666655
No 420
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.27 E-value=0.021 Score=54.98 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+..+.|+||+|+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34567899999999999999998765
No 421
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.25 E-value=0.028 Score=58.03 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.+.++||+|+|||+|++.|+..+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 68899999999999999999998
No 422
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.23 E-value=0.036 Score=60.01 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+.-++|+|+||+||||+++.|++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4457889999999999999998766
No 423
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.22 E-value=0.68 Score=46.34 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.7
Q ss_pred CCcEEEcCCCChHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAE 329 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~ 329 (710)
+++++.+|+|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 679999999999997644
No 424
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.21 E-value=0.28 Score=53.73 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=21.9
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
-+.|+|++|+||||+++.|+..+..
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhhh
Confidence 4679999999999999999988743
No 425
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.19 E-value=0.023 Score=54.61 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+.-+.|+||+|+||||+++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3457899999999999999998765
No 426
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.13 E-value=0.028 Score=53.97 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
.+.+.|++|+|||++|+.||+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5779999999999999999997
No 427
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.13 E-value=0.032 Score=57.89 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
..+.+.||+|+|||||++.|+..+-.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCchHHHHHHHHHhhccc
Confidence 36789999999999999999998753
No 428
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.09 E-value=0.044 Score=60.65 Aligned_cols=58 Identities=9% Similarity=-0.030 Sum_probs=38.8
Q ss_pred hhHHhhhhcCCC-CcccCHHHHHHHHHHH--HcCCCCCcEEEcCCCChHHHHHHHHHHHHH
Q 005179 279 DLTARASEELID-PVIGRETEIQRIIQIL--CRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 279 ~l~~~~~~~~l~-~liGr~~~i~~l~~~L--~~~~~~nvLL~GppG~GKT~la~~la~~l~ 336 (710)
.+.+.++.|..- +..-+.+..+.+.+.. ....+.+++|+|.+|+||||++++|++++.
T Consensus 360 ~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 360 ELRRRLRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp HHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 344456666543 3455554544444433 123446789999999999999999999994
No 429
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.07 E-value=0.022 Score=55.03 Aligned_cols=21 Identities=38% Similarity=0.284 Sum_probs=19.1
Q ss_pred CcEEEcCCCChHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAI 333 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~ 333 (710)
.+.|+|++|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999986
No 430
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.05 E-value=0.036 Score=56.88 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
..++++||||+|||+|++.||..+-..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 378899999999999999999987644
No 431
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.00 E-value=0.55 Score=45.91 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=16.2
Q ss_pred CCCcEEEcCCCChHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAE 329 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~ 329 (710)
+.++++.+|+|+|||...-
T Consensus 62 ~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHH
Confidence 4789999999999998644
No 432
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.98 E-value=0.04 Score=58.50 Aligned_cols=33 Identities=30% Similarity=0.267 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFF 694 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d 694 (710)
.++++||+|+|||+|.++|+..+-.++. .|.++
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~~~g-~I~ie 209 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPFDQR-LITIE 209 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCTTSC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCCce-EEEEC
Confidence 7899999999999999999998654443 44443
No 433
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.97 E-value=0.038 Score=55.07 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.+.+.||+|+||||+++.|+..+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999986
No 434
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.89 E-value=0.03 Score=54.79 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.-+.|+||+|+|||||++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45668899999999999999999866
No 435
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.88 E-value=0.029 Score=56.26 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=21.6
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..+.|.|++|+||||+++.|++.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 347899999999999999999977
No 436
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.82 E-value=0.03 Score=54.45 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 297 TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 297 ~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..+.+...+.......++|+|.+|+||||++..++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344444444444556678999999999999999999876
No 437
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.81 E-value=0.091 Score=50.95 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
..++|+|++|+|||+|+..|+..++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 478999999999999999999987654
No 438
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.81 E-value=0.046 Score=61.67 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
..++|.|+||+|||++|++|++.|+.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 37889999999999999999999873
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.78 E-value=0.035 Score=51.93 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH---HcCCCCcceeeC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAAC---YFGSVRIHYLFF 694 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~---lfg~~~~li~~d 694 (710)
.++||.||+|+|||++|.+|.+. |..++...++..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG~~lvaDD~v~i~~~ 54 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQE 54 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTTCEEEESSEEEEEES
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcCCeEecCCEEEEEEe
Confidence 38999999999999999999884 333444444444
No 440
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.74 E-value=0.037 Score=58.04 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=0.0
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehhh-------------------------------------
Q 005179 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL------------------------------------- 356 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~~------------------------------------- 356 (710)
++|.|+||+|||+++..+|..+... +..+..+.+..
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~-------g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a 121 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALND-------DRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKC 121 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT-------TCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHH
Q ss_pred --------hhhccccCccHHHHHHHHHHHHHhc-CCeEEEEccchhhhhCCCCCCCCCCChHhHHHhhcccccCCCeEEE
Q 005179 357 --------LMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427 (710)
Q Consensus 357 --------l~~g~~~~g~~e~~l~~~~~~~~~~-~~~IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~v~vI 427 (710)
+..-....-.+......+-...... +..++|||-++.+...+. ..+....-.++...|+.+..+-++.||
T Consensus 122 ~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~-~~~r~~ei~~isr~LK~lAkel~vpVi 200 (338)
T 4a1f_A 122 FDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKA-TKERHEQIAEISRELKTLARELEIPII 200 (338)
T ss_dssp HHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHH-HHHCCCCHHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCC-CCChHHHHHHHHHHHHHHHHHcCCeEE
Q ss_pred Ecc
Q 005179 428 AST 430 (710)
Q Consensus 428 ~at 430 (710)
+.+
T Consensus 201 ~ls 203 (338)
T 4a1f_A 201 ALV 203 (338)
T ss_dssp EEE
T ss_pred EEE
No 441
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.70 E-value=0.036 Score=57.16 Aligned_cols=39 Identities=10% Similarity=0.245 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCC--CCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGS--VRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~--~~~li~~d~se~ 698 (710)
|.++++||||+|||+|+-.++...-.. +...+-+|..+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 567999999999999988777665321 334555565443
No 442
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.70 E-value=0.026 Score=54.18 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=21.9
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..++|+||+|+|||+++..|+++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3458999999999999999998765
No 443
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.69 E-value=0.22 Score=48.59 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.1
Q ss_pred CCCcEEEcCCCChHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAE 329 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~ 329 (710)
+.++++.+|+|+|||....
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 5789999999999997543
No 444
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.68 E-value=0.14 Score=58.63 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 297 TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 297 ~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
.+.+.+..+|.. +.-.||.||||||||+++-.+...+..
T Consensus 193 ~Q~~AV~~al~~--~~~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 193 SQKEAVLFALSQ--KELAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp HHHHHHHHHHHC--SSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 455556666653 234689999999999765555444433
No 445
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.66 E-value=0.03 Score=55.00 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.-+.|+||+|+|||||++.|+..+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34557899999999999999998876
No 446
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.66 E-value=0.04 Score=55.23 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..+.|+||+|+||||+++.|++.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4467899999999999999999887
No 447
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.64 E-value=0.043 Score=53.38 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l 335 (710)
+..+.|+|++|+||||+++.|++.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999987
No 448
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.62 E-value=0.042 Score=61.24 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
.++|+|+||+|||++|+.||+.|
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 449
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.56 E-value=0.094 Score=50.97 Aligned_cols=25 Identities=20% Similarity=0.065 Sum_probs=20.6
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~~~ 338 (710)
.+++|+.|+||||.+..++.+....
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~ 55 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFA 55 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC
Confidence 3588999999999998888877543
No 450
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.55 E-value=0.07 Score=60.44 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=34.6
Q ss_pred CcccChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHH
Q 005179 629 KRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLA 680 (710)
Q Consensus 629 ~~v~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA 680 (710)
..++|.+..++.|...+.... .....++++||+|+|||+||+.++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK-------GEPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST-------TSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhccc-------CCCceEEEEcCCCCCHHHHHHHHH
Confidence 348899888888877764321 112478999999999999999986
No 451
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.54 E-value=0.032 Score=55.11 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
-+.|.||+|+|||++++.|++.|-
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999874
No 452
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.54 E-value=0.056 Score=52.74 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=26.6
Q ss_pred HHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 301 RIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 301 ~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+...+.......++|+|.+|+|||+|+..++...
T Consensus 28 ~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 28 KNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33333344445678999999999999999998876
No 453
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.52 E-value=0.038 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.3
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..+.|+|++|+||||+++.|+. +
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-l 27 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-L 27 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-T
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c
Confidence 3578999999999999999987 5
No 454
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.51 E-value=0.062 Score=59.45 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
..+.|.|++|||||++|++||+.|.-
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999863
No 455
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.49 E-value=0.94 Score=43.71 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=18.3
Q ss_pred CCCcEEEcCCCChHHHH-HHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAI-AEGLAIRI 335 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~l-a~~la~~l 335 (710)
+.++++.+|+|+|||.. +-.+...+
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 46899999999999976 33444433
No 456
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.48 E-value=0.04 Score=58.47 Aligned_cols=38 Identities=21% Similarity=0.108 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSP 697 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se 697 (710)
..++++||||+|||++|..+|..+-..+...+-+++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 36889999999999999999887643334455555443
No 457
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.48 E-value=0.051 Score=60.88 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSV 687 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~ 687 (710)
..+.|.||+|+|||+|+++||..+....
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 3688999999999999999999987543
No 458
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.47 E-value=0.019 Score=55.56 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=21.2
Q ss_pred cEEEcCCCChHHHHHHHHHHHHH
Q 005179 314 PILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 314 vLL~GppG~GKT~la~~la~~l~ 336 (710)
++|.|++|+||||+++.|++.+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999884
No 459
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.47 E-value=0.072 Score=53.28 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPS 696 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~s 696 (710)
..+++.|.+|+|||+++..||..+. .+.....+|+.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 4788999999999999999999998 66655555543
No 460
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.42 E-value=0.053 Score=49.64 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
+-.+++||+|+|||++..||.-.|||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l~g~ 50 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGLYWP 50 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 567899999999999999999999885
No 461
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.42 E-value=0.048 Score=53.93 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.9
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+..+.|+|++|+||||+++.|+..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999999988
No 462
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.37 E-value=0.044 Score=54.60 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
..+.+.||+|+|||+|.|+|+..+-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 467899999999999999999886543
No 463
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.34 E-value=0.095 Score=58.89 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=34.3
Q ss_pred cChHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHH
Q 005179 632 IGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAA 681 (710)
Q Consensus 632 ~Gq~~a~~~i~~~i~~~r~gl~~p~rp~~~~Lf~GPpGtGKT~lAkaLA~ 681 (710)
+|.++.++.|...+.... ......+.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 588888888887774431 11135788999999999999999996
No 464
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.33 E-value=0.045 Score=60.27 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
.++|+|+||+|||++++.||+.++
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999999876
No 465
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.31 E-value=0.039 Score=58.75 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=24.0
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 308 RRTKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 308 ~~~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.+..++|+||||+||||+++.|+...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3455678999999999999999999865
No 466
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.28 E-value=0.046 Score=61.73 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVR 688 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~ 688 (710)
+.+++.||||||||+++++++..+-..+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~ 233 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGL 233 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 37899999999999999999988755443
No 467
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=93.27 E-value=0.3 Score=50.19 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=18.7
Q ss_pred HHHHcCCCCCcEEEcCCCChHHHHH
Q 005179 304 QILCRRTKNNPILLGESGVGKTAIA 328 (710)
Q Consensus 304 ~~L~~~~~~nvLL~GppG~GKT~la 328 (710)
..+....+.++++++|+|+|||...
T Consensus 124 ~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 124 PLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHcCCCCeEEEECCCCCCccHHH
Confidence 3333444589999999999999753
No 468
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.26 E-value=0.039 Score=53.44 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=22.4
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
.+.-+.|+||+|+||||+++.|+..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34557899999999999999999876
No 469
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.26 E-value=0.065 Score=55.87 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
..++++||||+|||++|..+|...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH
Confidence 378999999999999999999874
No 470
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.24 E-value=0.038 Score=58.35 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
.+.+.||+|||||+|.|+||..+-.+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCC
Confidence 57799999999999999999986443
No 471
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.21 E-value=0.054 Score=53.74 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
-+.|.||+|+|||++++.|++.|-..
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 67899999999999999999987543
No 472
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.20 E-value=0.036 Score=51.97 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=17.7
Q ss_pred CCCcEEEcCCCChHHHHHHHH
Q 005179 311 KNNPILLGESGVGKTAIAEGL 331 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~l 331 (710)
+.-+.|+||+|+||||+++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 344789999999999999963
No 473
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.18 E-value=0.076 Score=55.88 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
..++++||||+|||++|..+|..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999987
No 474
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.18 E-value=0.043 Score=54.31 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
.++++|+||+|||++|-.+|..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6899999999999999887654
No 475
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.17 E-value=0.1 Score=56.66 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.0
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHhc
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQA 338 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~~ 338 (710)
+..++++|++|+||||++..||..+...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4567889999999999999999988653
No 476
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.16 E-value=0.071 Score=56.38 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFP 695 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~ 695 (710)
..+.|+|+||+|||+++..|+..+...+.....++.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 378999999999999999999998776655544443
No 477
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.15 E-value=0.038 Score=53.79 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 005179 661 AMLFCGPTGVGKTELAKSLAAC 682 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~ 682 (710)
.+.+.||+|+|||+|.++|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999987
No 478
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.15 E-value=0.042 Score=58.37 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
.-+.++||+|+|||+|++.|+..+-.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999998643
No 479
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.11 E-value=0.039 Score=51.14 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.3
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
..+.-+.|+||.|+|||||++.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344557899999999999999999887
No 480
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.11 E-value=0.16 Score=53.78 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh----------------hhhhccc
Q 005179 299 IQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG----------------LLMAGAK 362 (710)
Q Consensus 299 i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~----------------~l~~g~~ 362 (710)
++-+--.+.-..+..+.|+||+|+|||+|++.|++.+.... .+..++.+-++ -+.+...
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~-----~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atad 236 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH-----PDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFD 236 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHC-----TTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTT
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcC-----CCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCC
Q ss_pred cCccHHHHHHHHHHHHHh-----cCCeEEEEccchhhhhC
Q 005179 363 ERGELEARVTTLISEIQK-----SGDVILFIDEVHTLIGS 397 (710)
Q Consensus 363 ~~g~~e~~l~~~~~~~~~-----~~~~IL~IDEid~l~~~ 397 (710)
.......+.....-.+.+ ...++|++|++.+++.+
T Consensus 237 ep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A 276 (422)
T 3ice_A 237 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARA 276 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHH
No 481
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.09 E-value=0.037 Score=54.54 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFP 695 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~ 695 (710)
.+.+.||+|+|||+|.|+|+..+-.+. .-|.++.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g 65 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAPTE-GKVFLEG 65 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCCSE-EEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc-eEEEECC
Confidence 577999999999999999998764432 2344443
No 482
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.08 E-value=0.11 Score=53.39 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 311 ~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
+..++++|++|+||||++..||..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345678899999999999999988854
No 483
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.07 E-value=0.044 Score=52.97 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.4
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
.-+.|+||+|+||||+++.|+..+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999877
No 484
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.07 E-value=0.064 Score=60.10 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFF 694 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d 694 (710)
..++|.|++|+|||++|+.|++.|...+.....+|
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 36889999999999999999998764333334444
No 485
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.06 E-value=0.1 Score=56.93 Aligned_cols=114 Identities=17% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccCceEEEeehh---------------------------------
Q 005179 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG--------------------------------- 355 (710)
Q Consensus 309 ~~~~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~~~v~~ld~~--------------------------------- 355 (710)
..+.-++|.|+||+|||+++..+|..+... +.++..+.+.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~-------g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~ 267 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN-------DDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASED 267 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT-------TCEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc-------CCEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHHH
Q ss_pred --------------hhhhccccCccHHHHHHHHHHHHHhcCCe--EEEEccchhhhhCCCCCCCCCCChHhHHHhhcccc
Q 005179 356 --------------LLMAGAKERGELEARVTTLISEIQKSGDV--ILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (710)
Q Consensus 356 --------------~l~~g~~~~g~~e~~l~~~~~~~~~~~~~--IL~IDEid~l~~~~~~~~~~~~~~~~~~~~L~~~l 419 (710)
.+.......-.+.+....+-......+.. ++|||-+..+...+. .......-..+...|+.+.
T Consensus 268 ~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~-~~~r~~~i~~i~~~Lk~lA 346 (444)
T 3bgw_A 268 WGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKA-NDSRTNQISQISRDLKKMA 346 (444)
T ss_dssp HHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCS-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCC-CCCHHHHHHHHHHHHHHHH
Q ss_pred cCCCeEEEEcc
Q 005179 420 GRGELQCIAST 430 (710)
Q Consensus 420 ~~~~v~vI~at 430 (710)
.+-++.+|+.+
T Consensus 347 ke~~v~vi~ls 357 (444)
T 3bgw_A 347 RELDVVVIALS 357 (444)
T ss_dssp HHHTCEEEEEE
T ss_pred HHhCCeEEEEe
No 486
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.05 E-value=0.18 Score=56.85 Aligned_cols=38 Identities=26% Similarity=0.243 Sum_probs=28.5
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHhcCCCccccC-ceEEEeehhh
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS-KRIMSLDMGL 356 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l~~~~~p~~l~~-~~v~~ld~~~ 356 (710)
..++|+|.+|+||||+++.|++.+... + ..++.+|...
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~-------G~~~~~~lD~D~ 435 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQ-------GGRSVSLLLGDT 435 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHH-------CSSCEEEEEHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhccc-------CCceEEEECcHH
Confidence 457899999999999999999998431 2 4556665443
No 487
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.05 E-value=0.055 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.8
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHH
Q 005179 313 NPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 313 nvLL~GppG~GKT~la~~la~~l~ 336 (710)
.+.|+||+|+||||+++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999998875
No 488
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.03 E-value=0.046 Score=51.76 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.3
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHH
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~ 334 (710)
...+++|+|++|+|||+|+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999998753
No 489
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.02 E-value=0.049 Score=55.59 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.1
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q 005179 312 NNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 312 ~nvLL~GppG~GKT~la~~la~~l 335 (710)
..+.|+|++|+||||+++.|+ .+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~l 98 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NL 98 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HC
Confidence 347899999999999999999 45
No 490
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.00 E-value=0.049 Score=56.18 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=26.4
Q ss_pred HcCCCCCcEEEcCCCChHHHHHHHHHHHHHhcC
Q 005179 307 CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAE 339 (710)
Q Consensus 307 ~~~~~~nvLL~GppG~GKT~la~~la~~l~~~~ 339 (710)
.-+.+..+.|+||+|+|||||++.|+..+ .|.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~ 153 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGS 153 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc-Cce
Confidence 34556678899999999999999999887 443
No 491
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.99 E-value=0.04 Score=54.67 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGS 686 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~ 686 (710)
.+.+.||+|+|||+|.++|+..+-.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 57899999999999999999876443
No 492
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.98 E-value=0.12 Score=54.65 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.3
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHH
Q 005179 308 RRTKNNPILLGESGVGKTAIAEGLAIRI 335 (710)
Q Consensus 308 ~~~~~nvLL~GppG~GKT~la~~la~~l 335 (710)
-..+..++|+||+|+||||+++.|+..+
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3456789999999999999999998765
No 493
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.96 E-value=0.02 Score=57.71 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
.-+.|.|++|+|||++|+.||+.|-+
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~ 50 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCED 50 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 36889999999999999999998633
No 494
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.92 E-value=0.059 Score=56.88 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACY 683 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~l 683 (710)
..+.++||||+|||+|++.++..+
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999886
No 495
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.91 E-value=0.17 Score=52.70 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=23.7
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHh
Q 005179 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (710)
Q Consensus 310 ~~~nvLL~GppG~GKT~la~~la~~l~~ 337 (710)
.+.-+.|+||+|+||||+++.|+..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3455789999999999999999988754
No 496
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.91 E-value=0.079 Score=54.48 Aligned_cols=39 Identities=31% Similarity=0.329 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeCCCCC
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFFPSPF 698 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d~se~ 698 (710)
..+.++||+|+|||+++..||..+-.........|...+
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 478899999999999999999998655555555555443
No 497
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=92.89 E-value=0.69 Score=46.74 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHcCCCCCcEEEcCCCChHHHHHHHHHHHHH
Q 005179 295 RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (710)
Q Consensus 295 r~~~i~~l~~~L~~~~~~nvLL~GppG~GKT~la~~la~~l~ 336 (710)
+..+.+-+..++.. .+.+|.+|+|+|||.++-.++....
T Consensus 115 ~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp CHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHHH
Confidence 44444444444443 4568899999999999877776543
No 498
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.89 E-value=0.047 Score=58.08 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcCCCCcceeeC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFGSVRIHYLFF 694 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg~~~~li~~d 694 (710)
.+.|+||+|||||+|.|+||..+-.+.. -|.+|
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p~~G-~I~i~ 63 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETITSG-DLFIG 63 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEET
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCe-EEEEC
Confidence 5779999999999999999988644332 34444
No 499
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.89 E-value=0.041 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHcC
Q 005179 661 AMLFCGPTGVGKTELAKSLAACYFG 685 (710)
Q Consensus 661 ~~Lf~GPpGtGKT~lAkaLA~~lfg 685 (710)
-+.++||+|+|||+|.+.++...|.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999988764
No 500
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.88 E-value=0.089 Score=54.61 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHc
Q 005179 660 AAMLFCGPTGVGKTELAKSLAACYF 684 (710)
Q Consensus 660 ~~~Lf~GPpGtGKT~lAkaLA~~lf 684 (710)
.-+++.|+||+|||++|..+|...-
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999997654
Done!