Query 005180
Match_columns 710
No_of_seqs 262 out of 1263
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 17:49:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nyb_A Poly(A) RNA polymerase 100.0 8.8E-50 3E-54 425.2 24.1 273 35-352 14-300 (323)
2 4e8f_A Poly(A) RNA polymerase 100.0 4.6E-49 1.6E-53 431.4 27.5 287 30-352 32-365 (405)
3 4fh3_A Poly(A) RNA polymerase 100.0 3E-49 1E-53 422.5 23.4 278 39-352 13-337 (349)
4 3hj4_A Minor editosome-associa 100.0 3.7E-47 1.3E-51 411.2 21.9 292 40-350 5-366 (384)
5 2ikf_A RNA uridylyl transferas 100.0 2.5E-47 8.7E-52 410.4 19.8 285 20-348 14-348 (353)
6 2b4v_A RNA editing complex pro 100.0 4.4E-44 1.5E-48 397.6 24.2 289 26-353 4-442 (468)
7 3pq1_A Poly(A) RNA polymerase; 100.0 1.9E-42 6.4E-47 383.1 26.1 241 42-353 134-440 (464)
8 2hhp_A Poly(A) polymerase; tem 100.0 1.2E-41 4.1E-46 382.9 29.7 271 40-353 23-340 (530)
9 1q79_A Poly(A) polymerase alph 100.0 1.2E-41 4E-46 381.7 28.2 271 40-353 36-353 (514)
10 1r89_A TRNA nucleotidyltransfe 99.7 8.1E-15 2.8E-19 161.3 25.9 234 42-346 3-247 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.5 6.8E-13 2.3E-17 142.3 22.0 254 44-338 9-320 (349)
12 4at7_A Interleukin enhancer-bi 97.7 0.01 3.6E-07 63.8 24.5 183 50-245 35-250 (364)
13 1no5_A Hypothetical protein HI 97.5 0.00019 6.7E-09 64.8 7.9 44 65-108 12-56 (114)
14 1wot_A Putative minimal nucleo 97.4 0.00031 1.1E-08 61.9 7.5 39 69-107 15-53 (98)
15 1ylq_A Putative nucleotidyltra 97.3 0.00032 1.1E-08 61.6 6.1 42 66-107 3-46 (96)
16 2rff_A Putative nucleotidyltra 96.5 0.0022 7.4E-08 58.1 4.5 47 61-107 10-61 (111)
17 4at7_B NF90, interleukin enhan 96.5 0.079 2.7E-06 57.5 17.3 187 51-245 21-282 (383)
18 1kny_A Kntase, kanamycin nucle 94.9 0.011 3.7E-07 60.5 2.7 43 65-107 14-59 (253)
19 4ebj_A Aminoglycoside nucleoti 94.8 0.019 6.7E-07 59.1 4.3 46 62-107 18-68 (272)
20 3jz0_A Lincosamide nucleotidyl 81.4 1 3.5E-05 47.2 4.1 53 55-107 16-69 (287)
21 2fmp_A DNA polymerase beta; nu 78.6 18 0.00062 38.3 12.7 118 68-203 160-292 (335)
22 2fcl_A Hypothetical protein TM 62.0 46 0.0016 31.8 10.2 84 63-160 15-106 (169)
23 2bcq_A DNA polymerase lambda; 60.7 53 0.0018 34.8 11.4 119 67-203 156-286 (335)
24 2ihm_A POL MU, DNA polymerase 42.4 23 0.00078 38.0 5.0 56 67-123 163-220 (360)
25 1jms_A Terminal deoxynucleotid 38.3 42 0.0014 36.2 6.3 54 69-123 185-242 (381)
26 3er9_B Poly(A) polymerase cata 28.4 37 0.0013 37.1 3.6 72 34-105 129-209 (479)
27 2pbe_A AAD6, aminoglycoside 6- 27.2 38 0.0013 35.1 3.5 43 65-107 8-53 (294)
28 3b0x_A DNA polymerase beta fam 24.6 3.7E+02 0.013 30.2 11.3 111 67-203 167-279 (575)
No 1
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-50 Score=425.22 Aligned_cols=273 Identities=19% Similarity=0.343 Sum_probs=223.8
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceeeeccccCCCCCCCCceEEeecCCCcc--h
Q 005180 35 GAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVE--E 111 (710)
Q Consensus 35 ~~~~w~~le~~i~efv~~i~PT~eE~~~R~~VI~~Lq~iI~~-~p~a~V~~FGS~~tGL~Lp~SDIDL~I~~~~~~~--~ 111 (710)
..+.-..|+++|.+|+++++||++|.++|++++++|+++++. ||+++|++|||+++|+++|+||||++|..+.... .
T Consensus 14 ~~~~~~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~ 93 (323)
T 3nyb_A 14 QKEISDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESR 93 (323)
T ss_dssp CSSHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHH
T ss_pred cchHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCChhHH
Confidence 346677899999999999999999999999999999999996 7999999999999999999999999999876532 2
Q ss_pred HHHHHHHHHHHHHhhccccccceeEEEEE-eeeeeEEEEee--CCEEEEEeeecCCcchhhHHHHHHHHHhcCCchhHHH
Q 005180 112 ALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLV--QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRS 188 (710)
Q Consensus 112 ~~~~~L~~~L~~~~~~~~a~f~Vk~V~~I-~ARVPIIKf~~--~gI~VDISfNn~~gi~~s~fLe~v~~~i~~dp~fr~L 188 (710)
..+..+.++|++. . .+.+|++| +||||||||++ .||+|||||++..|+.++.++ ..++..+|+||+|
T Consensus 94 ~~l~~l~~~L~~~------~-~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li---~~~~~~~~~~r~l 163 (323)
T 3nyb_A 94 NNLYSLASHLKKK------N-LATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLI---REWLDDTPGLREL 163 (323)
T ss_dssp HHHHHHHHHHHHT------T-SCSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHH---HHHHHSCTTHHHH
T ss_pred HHHHHHHHHHhhC------C-CceEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHHHH---HHHHHhhhhHHHH
Confidence 4556677777542 1 23467778 99999999997 499999999999999999987 4567789999999
Q ss_pred HHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcCCCC------CCchH-HHHHHhhccc-ccccccceEEccCCc
Q 005180 189 IILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSL------NGPLA-VLYKFLDYFS-KFDWDSYCISLNGPV 260 (710)
Q Consensus 189 vllIK~Wak~~r~In~a~~GgLSSYaL~LMVI~fLQ~~~p~l------~~pL~-LL~~FFeyYs-~FDw~~~~ISI~GPv 260 (710)
+++||+||+ +++|++++.||||||+|++||++|||++++.+ ..+|+ +|++||+||+ +|||++++|||+...
T Consensus 164 v~~iK~wak-~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~ 242 (323)
T 3nyb_A 164 VLIVKQFLH-ARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGY 242 (323)
T ss_dssp HHHHHHHHH-HTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSC
T ss_pred HHHHHHHHH-HcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhccccCCCCcEEEEecCC
Confidence 999999998 89999999999999999999999999854211 13465 7899999999 999999999997210
Q ss_pred ccCCCCccccccCCCCCCCcccCHHHHHHHHhhccCCCCCCCCCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHH
Q 005180 261 RISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSA 340 (710)
Q Consensus 261 ~lsslp~~~~e~p~~~g~~~ll~ke~lr~~~~~fs~~~rg~e~~~~~f~~k~L~IeDP~d~snNlGRSVs~~~~~rIr~a 340 (710)
+ ..+.++.++. + . .......||||||++++||+||++. ++.+||+|
T Consensus 243 ~------------------~~~~k~~~~~----~-------~---~~~~~~~l~IeDP~~~~~nigr~~~--~~~~I~~~ 288 (323)
T 3nyb_A 243 P------------------VYFPKSTWSA----I-------Q---PIKNPFSLAIQDPGDESNNISRGSF--NIRDIKKA 288 (323)
T ss_dssp E------------------EEEEGGGCGG----G-------C---SCSCSSSCCBEETTEEEEETTTTCT--THHHHHHH
T ss_pred c------------------ceeeHHhccc----c-------c---ccCCCceEEEeCCCCCCcccccchH--HHHHHHHH
Confidence 0 0111110000 0 0 0012457999999999999999986 69999999
Q ss_pred HHHHHHHHHhhh
Q 005180 341 FTYGARKLGHIL 352 (710)
Q Consensus 341 F~~A~~~L~~il 352 (710)
|++|++.|.+.+
T Consensus 289 F~~A~~~L~~~~ 300 (323)
T 3nyb_A 289 FAGAFDLLTNRC 300 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998864
No 2
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=4.6e-49 Score=431.37 Aligned_cols=287 Identities=21% Similarity=0.311 Sum_probs=224.0
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceeeeccccCCCCCCCCceEEeecCCC
Q 005180 30 NQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLN 108 (710)
Q Consensus 30 ~p~~i~~~~w~~le~~i~efv~~i~PT~eE~~~R~~VI~~Lq~iI~~-~p~a~V~~FGS~~tGL~Lp~SDIDL~I~~~~~ 108 (710)
.++.+.++.|.+|++++.+|+++++||++|.++|++++++|+++|+. ||+++|++|||+++|+++|+|||||+|..+..
T Consensus 32 ~~~~~~~~~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~ 111 (405)
T 4e8f_A 32 CSYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSR 111 (405)
T ss_dssp ------CCSCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC-
T ss_pred CccccCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCC
Confidence 45566788999999999999999999999999999999999999995 89999999999999999999999999998763
Q ss_pred c-chHHHHHHHHHHHHHhhccccccceeEEEEE-eeeeeEEEEe-e--C----CEEEEEeeecCCcchhhHHHHHHHHHh
Q 005180 109 V-EEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCL-V--Q----NIVVDISFNQLGGLSTLCFLEQVDRLI 179 (710)
Q Consensus 109 ~-~~~~~~~L~~~L~~~~~~~~a~f~Vk~V~~I-~ARVPIIKf~-~--~----gI~VDISfNn~~gi~~s~fLe~v~~~i 179 (710)
. .+.++..+.+.|++. . .+|+.| +||||||||+ + . ||.||||||+..|+.++.|++.+ +
T Consensus 112 ~~~~~~l~~l~~~L~~~------~---~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll~~y---~ 179 (405)
T 4e8f_A 112 VQSDTIALQFYEELIAE------G---FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSY---T 179 (405)
T ss_dssp --CTTHHHHHHHHHHHT------T---EEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHHHHH---H
T ss_pred CCHHHHHHHHHHHHHhc------C---CeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHHHHHHHHHH---H
Confidence 2 234566677777541 1 345556 9999999999 5 3 89999999999999999998655 4
Q ss_pred cCCchhHHHHHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHH-HhcCCCC----------------------------
Q 005180 180 GKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIF-HLFHSSL---------------------------- 230 (710)
Q Consensus 180 ~~dp~fr~LvllIK~Wak~~r~In~a~~GgLSSYaL~LMVI~fL-Q~~~p~l---------------------------- 230 (710)
..+|++|+|+++||+||+ +++|++++.||||||+|++|||+|| |..+|.+
T Consensus 180 ~~~p~~r~Lv~~lK~wak-~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~ 258 (405)
T 4e8f_A 180 KLDARLKPMVLLVKHWAK-RKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLED 258 (405)
T ss_dssp HHCTTHHHHHHHHHHHHH-HTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGG
T ss_pred hhCHHHHHHHHHHHHHHH-HcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhh
Confidence 569999999999999998 7999999999999999999999999 6544321
Q ss_pred ------CCchH-HHHHHhhccc-ccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHHHHhhccCCCCCCC
Q 005180 231 ------NGPLA-VLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFD 302 (710)
Q Consensus 231 ------~~pL~-LL~~FFeyYs-~FDw~~~~ISI~GPv~lsslp~~~~e~p~~~g~~~ll~ke~lr~~~~~fs~~~rg~e 302 (710)
...|+ ||++||+||+ +|||++.+|||+.+ | .+++|+...+... . ...|..
T Consensus 259 ~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~-----------------g--~~~~K~~k~w~~~-~--~~~g~~ 316 (405)
T 4e8f_A 259 IPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRP-----------------D--GYLTKQEKGWTSA-T--EHTGSA 316 (405)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSST-----------------T--CCCBHHHHTCCC-----------
T ss_pred hccccccccHHHHHHHHHHHHhcccCCCCcEEEEecC-----------------C--ccccccccccccc-c--cccccc
Confidence 12355 7799999999 89999999999832 1 1233332111000 0 000000
Q ss_pred CCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHHHhhh
Q 005180 303 TNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHIL 352 (710)
Q Consensus 303 ~~~~~f~~k~L~IeDP~d~snNlGRSVs~~~~~rIr~aF~~A~~~L~~il 352 (710)
.. .......|||||||++++|+||+|+..++.+|+++|++|++.|.+..
T Consensus 317 ~~-~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~ 365 (405)
T 4e8f_A 317 DQ-IIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS 365 (405)
T ss_dssp ------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSS
T ss_pred cc-cccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 00124579999999999999999998889999999999999998864
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=3e-49 Score=422.54 Aligned_cols=278 Identities=20% Similarity=0.305 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceeeeccccCCCCCCCCceEEeecCCCcch-HHHHH
Q 005180 39 WQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEE-ALAND 116 (710)
Q Consensus 39 w~~le~~i~efv~~i~PT~eE~~~R~~VI~~Lq~iI~~-~p~a~V~~FGS~~tGL~Lp~SDIDL~I~~~~~~~~-~~~~~ 116 (710)
...++..+.+++++++||++|.++|++++++|+++|+. ||+|+|++|||+++|+++|+||||+||..+..... .+...
T Consensus 13 ~~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~~~ 92 (349)
T 4fh3_A 13 HKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQ 92 (349)
T ss_dssp CHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChHHHHHH
Confidence 34567777888999999999999999999999999995 89999999999999999999999999998775433 33333
Q ss_pred HHHHHHHHhhccccccceeEEEEE-eeeeeEEEEeeC-------CEEEEEeeecCCcchhhHHHHHHHHHhcCCchhHHH
Q 005180 117 VCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQ-------NIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRS 188 (710)
Q Consensus 117 L~~~L~~~~~~~~a~f~Vk~V~~I-~ARVPIIKf~~~-------gI~VDISfNn~~gi~~s~fLe~v~~~i~~dp~fr~L 188 (710)
+...+.+ .. .+++.| +||||||||.++ ++.|||||++..|++++++++. ++..+|+||+|
T Consensus 93 ~~~~~~~------~~---~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~~t~ll~~---~~~~~~~~r~l 160 (349)
T 4fh3_A 93 FYEELIA------EG---FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSS---YTKLDARLKPM 160 (349)
T ss_dssp HHHHHHH------TT---EEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHHHHHHHHH---HHHHCTTHHHH
T ss_pred HHHHHHh------hc---ccceEeeeeeeeeEEEEecccccccccceeecCcCcchHHHHHHHHHH---HhhcCHHHHHH
Confidence 3332221 11 234556 999999999973 7999999999999999999854 46669999999
Q ss_pred HHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcC-CCC----------------------------------CCc
Q 005180 189 IILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFH-SSL----------------------------------NGP 233 (710)
Q Consensus 189 vllIK~Wak~~r~In~a~~GgLSSYaL~LMVI~fLQ~~~-p~l----------------------------------~~p 233 (710)
+++||+||+ +++|++++.||||||+|++|||+|||+.. +.+ ..+
T Consensus 161 ~~~iK~wak-~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~s 239 (349)
T 4fh3_A 161 VLLVKHWAK-RKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSS 239 (349)
T ss_dssp HHHHHHHHH-HTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCC
T ss_pred HHHHHHHHH-HcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcccccccchhhcccccCccc
Confidence 999999998 78999999999999999999999999632 111 123
Q ss_pred hH-HHHHHhhccc-ccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHHHHhhccCCCCCCCCCCCCCCCc
Q 005180 234 LA-VLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPK 311 (710)
Q Consensus 234 L~-LL~~FFeyYs-~FDw~~~~ISI~GPv~lsslp~~~~e~p~~~g~~~ll~ke~lr~~~~~fs~~~rg~e~~~~~f~~k 311 (710)
++ ||++||+||| +|||.+.+||++.+. .+++++...+.. ...............+
T Consensus 240 lg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~-------------------~~~~k~~k~~~~----~~~~~~~~~~~~~~~~ 296 (349)
T 4fh3_A 240 LGSLLHGFFRFYAYKFEPREKVVTFRRPD-------------------GYLTKQEKGWTS----ATEHTGSADQIIKDRY 296 (349)
T ss_dssp HHHHHHHHHHHHHHTCCTTTBCBCSSSTT-------------------CCCBHHHHTCC-------------------CC
T ss_pred HHHHHHHHHHHhhhccCCCCceEEecCCC-------------------CccchHHhcccc----cccccCcccccCCCCc
Confidence 55 7799999999 799999999998441 123332211100 0000000001122346
Q ss_pred ceEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHHHhhh
Q 005180 312 HLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHIL 352 (710)
Q Consensus 312 ~L~IeDP~d~snNlGRSVs~~~~~rIr~aF~~A~~~L~~il 352 (710)
.|||||||++++|+||+|+..++.+|++||++|+++|.+..
T Consensus 297 ~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~ 337 (349)
T 4fh3_A 297 ILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS 337 (349)
T ss_dssp SSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS
T ss_pred eEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc
Confidence 79999999999999999999899999999999999998643
No 4
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=3.7e-47 Score=411.19 Aligned_cols=292 Identities=18% Similarity=0.230 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceeeeccccCCCCCCCCceEEeecCCCcc-----hHH
Q 005180 40 QRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVE-----EAL 113 (710)
Q Consensus 40 ~~le~~i~efv~~i~PT~eE~~~R~~VI~~Lq~iI~~-~p~a~V~~FGS~~tGL~Lp~SDIDL~I~~~~~~~-----~~~ 113 (710)
+++++||.+|+++|+||++|.++|++++++|+++|+. ||+++|++|||+++|+++|+|||||||..+.... +..
T Consensus 5 ~~lt~EI~dFy~~i~PT~eE~~~R~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~~~~~~~ 84 (384)
T 3hj4_A 5 REFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERV 84 (384)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGGTTCHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccccccchh
Confidence 6799999999999999999999999999999999995 8999999999999999999999999999865311 110
Q ss_pred -HHHHHHHHHHHhhccccccceeEEEEEeeeeeEEEEeeC--CEEEEEeeecCCcchhhHHHHHHHHHhcCC-chhHHHH
Q 005180 114 -ANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQ--NIVVDISFNQLGGLSTLCFLEQVDRLIGKD-HLFKRSI 189 (710)
Q Consensus 114 -~~~L~~~L~~~~~~~~a~f~Vk~V~~I~ARVPIIKf~~~--gI~VDISfNn~~gi~~s~fLe~v~~~i~~d-p~fr~Lv 189 (710)
...+...++ . ++......++.|.+++||||||||++. |+.|||||||..|+.++++|+.+ ...+ +++++|+
T Consensus 85 ~~~~~lrll~-L-~k~~~~~~ie~V~ii~ARVPIIKf~d~~tgi~~DIS~nn~~gi~ns~ll~~y---~~~~p~rlr~Lv 159 (384)
T 3hj4_A 85 DEQNNKRMTR-F-GKEASAMGMEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAI---RQVFPDFYGAYI 159 (384)
T ss_dssp HHHHHHHHHH-H-HHHHHHHTCEEEEEECSSSCEEEEECTTTCCEEEEEECCHHHHHHHHHHHHH---HHTSHHHHHHHH
T ss_pred hHHHHHHHHH-H-HhhcccCCeeEEeecCcccCEEEEEEcCCCeEEEEEecccchHHHHHHHHHH---HhcCcHHHHHHH
Confidence 111111111 0 011112356777778999999999985 99999999999999999998655 4453 4699999
Q ss_pred HHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcC--CCCC-----------------------C-----------c
Q 005180 190 ILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFH--SSLN-----------------------G-----------P 233 (710)
Q Consensus 190 llIK~Wak~~r~In~a~~GgLSSYaL~LMVI~fLQ~~~--p~l~-----------------------~-----------p 233 (710)
++||+||+ +++|++++.||||||+|++|||+|||+++ |.++ . .
T Consensus 160 llvK~Wak-~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~s 238 (384)
T 3hj4_A 160 HLVKAWGK-AREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEK 238 (384)
T ss_dssp HHHHHHHH-HTTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHH
T ss_pred HHHHHHHH-HcCCCCccCCCccHHHHHHHHHHHHhcCCCCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCccc
Confidence 99999997 79999999999999999999999999853 2221 0 1
Q ss_pred hH-H----HHHHhhcccccccccceEEccCCcccCCCCccccccC-------------------CCCCCCcccCHHHHHH
Q 005180 234 LA-V----LYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETP-------------------ENSGGDLLLSSEFLKE 289 (710)
Q Consensus 234 L~-L----L~~FFeyYs~FDw~~~~ISI~GPv~lsslp~~~~e~p-------------------~~~g~~~ll~ke~lr~ 289 (710)
|| | |++||+||++|||++++|||+.|..+.+++..++.+. ...| .+++.-...
T Consensus 239 LgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~ 315 (384)
T 3hj4_A 239 LGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDG---PLDENDFSA 315 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGC---SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccchhhhhhhhhccchhhhhhhhhhhccccCC---CCCCCcccc
Confidence 44 4 7899999999999999999999888777665543210 0000 111111100
Q ss_pred HHhhccCCCCCCCCCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHHHh
Q 005180 290 CVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGH 350 (710)
Q Consensus 290 ~~~~fs~~~rg~e~~~~~f~~k~L~IeDP~d~snNlGRSVs~~~~~rIr~aF~~A~~~L~~ 350 (710)
.+.. +.. ..-......||| |...+|+||.|.......||.+|++|++.|+.
T Consensus 316 ~~~~--------~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (384)
T 3hj4_A 316 SMQN--------ETT-QRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLID 366 (384)
T ss_dssp HHHH--------HHH-TSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTT
T ss_pred ccCc--------ccc-ccccccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhc
Confidence 0000 000 011134589999 99999999999998999999999999999876
No 5
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=2.5e-47 Score=410.39 Aligned_cols=285 Identities=18% Similarity=0.229 Sum_probs=207.2
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceeeeccc-cCCCCCCC
Q 005180 20 PSSSSSSVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVP-LKTYLPDG 97 (710)
Q Consensus 20 ~~~~~~~~~p~p~~i~~~~w~~le~~i~efv~~i~PT~eE~~~R~~VI~~Lq~iI~~-~p~a~V~~FGS~~-tGL~Lp~S 97 (710)
+.|..+.++|.+.. +++++.++++...++.+|.++|++++++|+++|+. ||+++|++|||++ +|+++|+|
T Consensus 14 ~~~~~~~~~P~~~~--------l~~~l~~~~~~~~~~~~e~~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl~lp~S 85 (353)
T 2ikf_A 14 LVPRGSHMPPSPAV--------VGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGS 85 (353)
T ss_dssp ---------CCHHH--------HHHHHHHHTTTTCC-----CCHHHHHHHHHHHHHHHCTTCEEEEESHHHHHSSCCTTC
T ss_pred ceecccCCCCCHHH--------HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHCCCcEEEEecCccccCCCCCCc
Confidence 45545556666533 35556666677889999999999999999999995 8999999999997 99999999
Q ss_pred CceEEeecCCCc----------------chHHHHHHHHHHHHHhhccccccceeEEEEE-eeeeeEEEEeeC-CEEEEEe
Q 005180 98 DIDLTAFGGLNV----------------EEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQ-NIVVDIS 159 (710)
Q Consensus 98 DIDL~I~~~~~~----------------~~~~~~~L~~~L~~~~~~~~a~f~Vk~V~~I-~ARVPIIKf~~~-gI~VDIS 159 (710)
|||++|..+..+ ..+++.++.++|++. . .+.+|+.| +||||||||++. +|.||||
T Consensus 86 DIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~------~-~~~~v~~i~~ArVPIiK~~~~~~i~~Dis 158 (353)
T 2ikf_A 86 DVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQK------H-LSWNVEEVRRTRVPVVRVKGGGAVDFDIT 158 (353)
T ss_dssp CEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHH------C-TTSEEEEECSSSSCEEEEECSSSCEEEEE
T ss_pred ceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhc------C-CCCceEEecccceeEEEEEcCCCcEEEEE
Confidence 999999875321 023344555555432 1 12466666 999999999994 9999999
Q ss_pred eecCCcchhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhCccCCCC-CCCChHHHHHHHHHHHHhcC--CCC------
Q 005180 160 FNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHH-GLISTYALETLVLYIFHLFH--SSL------ 230 (710)
Q Consensus 160 fNn~~gi~~s~fLe~v~~~i~~dp~fr~LvllIK~Wak~~r~In~a~~-GgLSSYaL~LMVI~fLQ~~~--p~l------ 230 (710)
|++..|+.++++++.+ +..+|+||+|+++||+||+ +++|++++. ||||||+|++|||+|||+.. |.+
T Consensus 159 ~~n~~g~~~t~ll~~~---~~~~p~~r~l~~~iK~wa~-~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~ 234 (353)
T 2ikf_A 159 AYRRNGVRNSALLRAY---FEQNPPCRWLSMSIKRWSK-QTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTID 234 (353)
T ss_dssp ESCCHHHHHHHHHHHH---HHHSTTHHHHHHHHHHHHH-HTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCC
T ss_pred ecCccHHHHHHHHHHH---HHhCccHHHHHHHHHHHHH-HcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccC
Confidence 9999999999998554 5669999999999999998 799999999 99999999999999998642 211
Q ss_pred -------------------CCchH-HHHHHhhccc-ccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHH
Q 005180 231 -------------------NGPLA-VLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKE 289 (710)
Q Consensus 231 -------------------~~pL~-LL~~FFeyYs-~FDw~~~~ISI~GPv~lsslp~~~~e~p~~~g~~~ll~ke~lr~ 289 (710)
..+++ +|++||+||+ +|||++.+|||+.+. +++++..++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~--------------------~~~k~~~~w 294 (353)
T 2ikf_A 235 VSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNRPG--------------------ITTKEELDW 294 (353)
T ss_dssp GGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECSSSSS--------------------CEEHHHHTC
T ss_pred hhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEcCCCc--------------------ceechhhcc
Confidence 11244 7899999999 899999999997431 223332211
Q ss_pred HHhhccCCCCCCCCCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHH
Q 005180 290 CVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKL 348 (710)
Q Consensus 290 ~~~~fs~~~rg~e~~~~~f~~k~L~IeDP~d~snNlGRSVs~~~~~rIr~aF~~A~~~L 348 (710)
.......+..+ .......|||||||++++|+||+|+..++.+|+++|++|++++
T Consensus 295 ~~~~~~~~~~~-----~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 295 TKSAEDFARMN-----GEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp SHHHHTTCEET-----TEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred ccccccccccc-----CCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 10000000000 0112467999999999999999999888999999999999875
No 6
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=4.4e-44 Score=397.60 Aligned_cols=289 Identities=16% Similarity=0.226 Sum_probs=215.8
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceeeecc-ccCCCCCCCCceEEe
Q 005180 26 SVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSV-PLKTYLPDGDIDLTA 103 (710)
Q Consensus 26 ~~~p~p~~i~~~~w~~le~~i~efv~~i~PT~eE~~~R~~VI~~Lq~iI~~-~p~a~V~~FGS~-~tGL~Lp~SDIDL~I 103 (710)
+.|+....-....|..+...+.+......+++++.+.|..++++|+.+|+. ||+|+|++|||+ .+|+++|+||||+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~ 83 (468)
T 2b4v_A 4 SLPSTKLNPSPDHYAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLAC 83 (468)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEE
T ss_pred CCCCccCCCChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEE
Confidence 355666666788999999999888888889999999999999999999996 899999999999 699999999999999
Q ss_pred ecCCCcchH-----HHHHHHHHHHHHhhccccccceeEEEEE-eeeeeEEEEe----e----------------------
Q 005180 104 FGGLNVEEA-----LANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCL----V---------------------- 151 (710)
Q Consensus 104 ~~~~~~~~~-----~~~~L~~~L~~~~~~~~a~f~Vk~V~~I-~ARVPIIKf~----~---------------------- 151 (710)
......... ...+|.++|++. ...+.+.+|+.| +||||||||. +
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l 159 (468)
T 2b4v_A 84 MFDDPYPSHEVQAKRTDKLRTVIKRY----VPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTAL 159 (468)
T ss_dssp ECSSSSCCHHHHHHHHHHHHHHHHTT----SCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEE
T ss_pred ecCCCCccchhhHHHHHHHHHHHHHh----ccccccceeEeccCCCcceEEEEecccccccccccccccccccccccccc
Confidence 987432211 112355666542 012223567778 9999999997 1
Q ss_pred --------------------------------------------------------------------------------
Q 005180 152 -------------------------------------------------------------------------------- 151 (710)
Q Consensus 152 -------------------------------------------------------------------------------- 151 (710)
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~ 239 (468)
T 2b4v_A 160 LDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFV 239 (468)
T ss_dssp EEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSC
T ss_pred ccccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhccccccccccccccccccccccccccc
Confidence
Q ss_pred ---CCEEEEEeeecCCcchhhHHHHHHHHHhcCCch-hHHHHHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcC
Q 005180 152 ---QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHL-FKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFH 227 (710)
Q Consensus 152 ---~gI~VDISfNn~~gi~~s~fLe~v~~~i~~dp~-fr~LvllIK~Wak~~r~In~a~~GgLSSYaL~LMVI~fLQ~~~ 227 (710)
.||+|||||| ..|+.++.||+.| +..+|+ +|+|+++||+||+ +++|++++.||||||+|+||||+|||+..
T Consensus 240 ~~~~gi~~DISfn-~~gi~nS~ll~~y---~~~dpr~~r~Lvl~vK~Wak-~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~ 314 (468)
T 2b4v_A 240 PEMFMYRWDISFV-GYGVKNSYLIRHY---LHNGPVAARHTAMAVKAWGK-ATNVGAGSGAMLTSYAVTVMFIYYLLVTR 314 (468)
T ss_dssp CGGGSSCEEEESC-SHHHHHHHHHHHH---HHHSCTTHHHHHHHHHHHHH-TCC-----CCSSCHHHHHHHHHHHHHHTT
T ss_pred ccccceEEEEecc-hhHHHHHHHHHHH---HhhChHHHHHHHHHHHHHHH-HcCCCCccCCCccHHHHHHHHHHHHHhcC
Confidence 1578999998 9999999998655 556999 9999999999998 89999999999999999999999999753
Q ss_pred --CCCC------------------------CchH-HHHHHhhccc-ccccccceEEccCCcccCCCCccccccCCCCCCC
Q 005180 228 --SSLN------------------------GPLA-VLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGD 279 (710)
Q Consensus 228 --p~l~------------------------~pL~-LL~~FFeyYs-~FDw~~~~ISI~GPv~lsslp~~~~e~p~~~g~~ 279 (710)
|.+. .+|+ ||++||+||+ +|||++.+|||+.+.
T Consensus 315 ~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g~------------------- 375 (468)
T 2b4v_A 315 QVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNR------------------- 375 (468)
T ss_dssp SSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSS-------------------
T ss_pred cCCCCCcccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCCc-------------------
Confidence 1100 1355 7899999999 999999999997331
Q ss_pred cccCHHHHHHHHhhccCCCCCCCCCCCCCCCcceEEeCCCCC----CCCcccCcCHHHHHHHHHHHHHHHHHHHhhhc
Q 005180 280 LLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKE----NNNLGRSVSKGNFYRIRSAFTYGARKLGHILS 353 (710)
Q Consensus 280 ~ll~ke~lr~~~~~fs~~~rg~e~~~~~f~~k~L~IeDP~d~----snNlGRSVs~~~~~rIr~aF~~A~~~L~~il~ 353 (710)
.+.++... +..+. +++ .-....|||||||++ ++|+||+|+..++.+|+++|++|++.|.+...
T Consensus 376 -~~~K~~~~-----w~~~~----n~~-~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~~ 442 (468)
T 2b4v_A 376 -RSYRSDIG-----WNFPQ----NKK-GTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFLP 442 (468)
T ss_dssp -CEEHHHHT-----CCCGG----GEE-TTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred -ceeccccc-----ccccc----ccc-CCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 22332211 10000 000 001236999999999 99999999988899999999999999987653
No 7
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-42 Score=383.13 Aligned_cols=241 Identities=17% Similarity=0.200 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceeeeccccCCCCCCCCceEEeecCCCcc----------
Q 005180 42 AEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVE---------- 110 (710)
Q Consensus 42 le~~i~efv~~i~PT~eE~~~R~~VI~~Lq~iI~~-~p~a~V~~FGS~~tGL~Lp~SDIDL~I~~~~~~~---------- 110 (710)
++++|.+|+++++||++|.++|..++++|+++|+. ||+|+|++|||+++||++|+|||||||..+....
T Consensus 134 l~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~g~~ 213 (464)
T 3pq1_A 134 IDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKISGNF 213 (464)
T ss_dssp HHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEECC-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCCcccccccccccch
Confidence 89999999999999999999999999999999995 9999999999999999999999999997643100
Q ss_pred -----------hHH-HHHHHHHHHHHhhccccccceeEEEEE-eeeeeEEEEeeC--CEEEEEeeecCCcchhhHHHHHH
Q 005180 111 -----------EAL-ANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQ--NIVVDISFNQLGGLSTLCFLEQV 175 (710)
Q Consensus 111 -----------~~~-~~~L~~~L~~~~~~~~a~f~Vk~V~~I-~ARVPIIKf~~~--gI~VDISfNn~~gi~~s~fLe~v 175 (710)
+.. .+.+...+.+..++ ....+.+|+.| +||||||||++. ||.|||||||..|+.+++||+.
T Consensus 214 ~le~~~k~l~seR~~~~~iL~~la~~L~~--~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~~gi~ns~ll~~- 290 (464)
T 3pq1_A 214 LMEFQVKNVPSERIATQKILSVLGECLDH--FGPGCVGVQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSELLYI- 290 (464)
T ss_dssp --EECCCCCSCHHHHHHHHHHHHHHHHHH--SSTTEEEEEEECSSSSCEEEEEETTTCCEEEEECSCTTHHHHHHHHHH-
T ss_pred hhhhhhccchhhHHHHHHHHHHHHHHHHh--cCCCCceeEEecCCCCCEEEEEEcCCCeEEEEecCCCcHHHHHHHHHH-
Confidence 111 12222222221111 11234677777 999999999996 9999999999999999999854
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHhhCccCCCCCC-CChHHHHHHHHHHHHhcCCCCC-----------------------
Q 005180 176 DRLIGKDHLFKRSIILIKAWCYYESRILGAHHGL-ISTYALETLVLYIFHLFHSSLN----------------------- 231 (710)
Q Consensus 176 ~~~i~~dp~fr~LvllIK~Wak~~r~In~a~~Gg-LSSYaL~LMVI~fLQ~~~p~l~----------------------- 231 (710)
+...+|++|+|+++||+||+ +++|++++.|| ||||+|++|||+|||++.|.+.
T Consensus 291 --y~~~dprlr~Lvl~vK~Wak-~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~ 367 (464)
T 3pq1_A 291 --YGALDSRVRALVFSVRCWAR-AHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNC 367 (464)
T ss_dssp --HHTTCHHHHHHHHHHHHHHH-HTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC----------
T ss_pred --HHHhCccHHHHHHHHHHHHH-HhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcccceeeccccc
Confidence 56779999999999999998 89999999998 9999999999999998753320
Q ss_pred ---------------CchH-HHHHHhhcccccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHHHHhhcc
Q 005180 232 ---------------GPLA-VLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFS 295 (710)
Q Consensus 232 ---------------~pL~-LL~~FFeyYs~FDw~~~~ISI~GPv~lsslp~~~~e~p~~~g~~~ll~ke~lr~~~~~fs 295 (710)
..++ ||.+||+||++|||++++|||
T Consensus 368 ~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIsI--------------------------------------- 408 (464)
T 3pq1_A 368 TFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXXX--------------------------------------- 408 (464)
T ss_dssp -----------CCCCCCHHHHHHHHHHHGGGCCCCCCCCCC---------------------------------------
T ss_pred cccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCccccccc---------------------------------------
Confidence 1234 678999999999998766643
Q ss_pred CCCCCCCCCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHHHhhhc
Q 005180 296 VPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILS 353 (710)
Q Consensus 296 ~~~rg~e~~~~~f~~k~L~IeDP~d~snNlGRSVs~~~~~rIr~aF~~A~~~L~~il~ 353 (710)
..|++|+|+...+.+++.+++.|+..|.+-..
T Consensus 409 --------------------------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~~ 440 (464)
T 3pq1_A 409 --------------------------XXXXXXXVSQSQLQKFVDLARESAWILQQEDT 440 (464)
T ss_dssp --------------------------C-------CHHHHHHHHHHHHHHHHHHHCC--
T ss_pred --------------------------ccccccccCHHHHHHHHHHHHHHHHHHhhccc
Confidence 46899999999999999999999999875443
No 8
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=1.2e-41 Score=382.87 Aligned_cols=271 Identities=20% Similarity=0.291 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhhc-----------------CCCceeeeccccCCCCCCCCce
Q 005180 40 QRAEEATQGIIAQ--VQPTVVSEERRKAVIDYVQRLIRNYL-----------------GCEVFPFGSVPLKTYLPDGDID 100 (710)
Q Consensus 40 ~~le~~i~efv~~--i~PT~eE~~~R~~VI~~Lq~iI~~~p-----------------~a~V~~FGS~~tGL~Lp~SDID 100 (710)
.++..++.++++. +.||+||.++|++|+++|+++|++|+ +++|++|||+++|+++|+||||
T Consensus 23 ~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~V~~FGSy~lG~~~p~SDID 102 (530)
T 2hhp_A 23 NKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDID 102 (530)
T ss_dssp HHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEEEEHHHHHTCCCTTCCEE
T ss_pred hhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCceEEEecccccCCCCCCCcee
Confidence 3445555555544 89999999999999999999999884 6999999999999999999999
Q ss_pred EEeecCCCc-chHHHHHHHHHHHHHhhccccccceeEEEEE-eeeeeEEEEeeCCEEEEEeeecCCc--------ch---
Q 005180 101 LTAFGGLNV-EEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQNIVVDISFNQLGG--------LS--- 167 (710)
Q Consensus 101 L~I~~~~~~-~~~~~~~L~~~L~~~~~~~~a~f~Vk~V~~I-~ARVPIIKf~~~gI~VDISfNn~~g--------i~--- 167 (710)
++++.+... .++++..+.++|++ ...+++|+.| +|+||||||...||.|||+|++..+ +.
T Consensus 103 ~~v~~p~~~~~~dff~~l~~~L~~-------~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~~ip~~l~l~~~~ 175 (530)
T 2hhp_A 103 TLVVVPKHVTREDFFTVFDSLLRE-------RKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKN 175 (530)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHT-------CTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSSSCBCTTCCSCCGG
T ss_pred EEEecCCcCCHHHHHHHHHHHHhc-------CCCCceEEEecCCcccEEEEEECCEeeEEEEeccccccCCcccCCCchh
Confidence 999998754 34667777777753 2356889999 9999999999999999999987531 10
Q ss_pred --------------hhHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcCCCCCCc
Q 005180 168 --------------TLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGP 233 (710)
Q Consensus 168 --------------~s~fLe~v~~~i~~dp~fr~LvllIK~Wak~~r~In~a~~GgLSSYaL~LMVI~fLQ~~~p~l~~p 233 (710)
.....+.|.+++...+.||.++++||+||+ +|+|++++.|+||||+|+|||+++||+++. ..+
T Consensus 176 ~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak-~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P~--~s~ 252 (530)
T 2hhp_A 176 LLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQ-RRAVYANIFGFPGGVAWAMLVARICQLYPN--ACS 252 (530)
T ss_dssp GGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-HTTCCCGGGTSCCHHHHHHHHHHHHHHSTT--CCH
T ss_pred hhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHH-HcCCCcccccCCcHHHHHHHHHHHHhcCCC--CCH
Confidence 112234567778888999999999999998 899999999999999999999999998643 244
Q ss_pred hHHHHHHhhcccccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHHHHhhccCCCCCCCCCC-CCCCCcc
Q 005180 234 LAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNS-RSFPPKH 312 (710)
Q Consensus 234 L~LL~~FFeyYs~FDw~~~~ISI~GPv~lsslp~~~~e~p~~~g~~~ll~ke~lr~~~~~fs~~~rg~e~~~-~~f~~k~ 312 (710)
..+|.+||+||++|||.+ .|.+..+ + +|. .- .+.|.... .......
T Consensus 253 ~~LL~~FF~~y~~~dw~~-pV~l~~~--------------~-~g~-~~----------------~~~w~p~~~~~d~~~~ 299 (530)
T 2hhp_A 253 AVILNRFFIILSEWNWPQ-PVILKPI--------------E-DGP-LQ----------------VRVWNPKIYAQDRSHR 299 (530)
T ss_dssp HHHHHHHHHHHHHCCTTS-CEESSCC--------------C-CCS-SC----------------SCCCCTTTCHHHHTCS
T ss_pred HHHHHHHHHHHhcCCCCC-ceEeccc--------------C-CCC-cc----------------ccccCcccCCCCCccc
Confidence 568899999999999985 5554311 0 110 00 01111000 0001356
Q ss_pred eEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHHHhhhc
Q 005180 313 LNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILS 353 (710)
Q Consensus 313 L~IeDP~d~snNlGRSVs~~~~~rIr~aF~~A~~~L~~il~ 353 (710)
|+|+||+++.+|+|++|++.++.+|++||++|++.|.+++.
T Consensus 300 m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~ 340 (530)
T 2hhp_A 300 MPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFS 340 (530)
T ss_dssp SCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeEECCCCCCCccCccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998765
No 9
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=1.2e-41 Score=381.75 Aligned_cols=271 Identities=21% Similarity=0.273 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhh-----------------cCCCceeeeccccCCCCCCCCce
Q 005180 40 QRAEEATQGIIAQ--VQPTVVSEERRKAVIDYVQRLIRNY-----------------LGCEVFPFGSVPLKTYLPDGDID 100 (710)
Q Consensus 40 ~~le~~i~efv~~--i~PT~eE~~~R~~VI~~Lq~iI~~~-----------------p~a~V~~FGS~~tGL~Lp~SDID 100 (710)
..+..++.++++. +.||+||.++|++|+++|+++|++| ++++|++|||+++|+++|+||||
T Consensus 36 ~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v~~FGS~~lG~~~p~SDID 115 (514)
T 1q79_A 36 ALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADID 115 (514)
T ss_dssp HHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEHHHHHTCCCTTCCEE
T ss_pred HHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceEEEeeeeccCCCCCCCcee
Confidence 3345556666654 8999999999999999999999976 36999999999999999999999
Q ss_pred EEeecCCCc-chHHHHHHHHHHHHHhhccccccceeEEEEE-eeeeeEEEEeeCCEEEEEeeecCCcc--------h---
Q 005180 101 LTAFGGLNV-EEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLVQNIVVDISFNQLGGL--------S--- 167 (710)
Q Consensus 101 L~I~~~~~~-~~~~~~~L~~~L~~~~~~~~a~f~Vk~V~~I-~ARVPIIKf~~~gI~VDISfNn~~gi--------~--- 167 (710)
++++.+... .++++..+.++|++ ...+++|+.| +|+||||||.+.||+|||+|++..+. .
T Consensus 116 ~~~v~p~~~~~~dff~~l~~~L~~-------~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~~~p~~l~l~~~~ 188 (514)
T 1q79_A 116 ALCVAPRHVDRSDFFTSFYDKLKL-------QEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDS 188 (514)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHT-------CTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCSSBCTTCCTTCGG
T ss_pred EEEecCCcCCHHHHHHHHHHHHhc-------CccCceEEEecCCcccEEEEEECCeeEEEEEecCCcccCcccccCCchh
Confidence 999998765 35666777777754 1246889999 99999999999999999999985421 1
Q ss_pred --------------hhHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcCCCCCCc
Q 005180 168 --------------TLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGP 233 (710)
Q Consensus 168 --------------~s~fLe~v~~~i~~dp~fr~LvllIK~Wak~~r~In~a~~GgLSSYaL~LMVI~fLQ~~~p~l~~p 233 (710)
.....+.+.+++..++.||.++++||+||| +|+|++++.||||||+|++||+++||+++. ..+
T Consensus 189 ~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak-~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~P~--~s~ 265 (514)
T 1q79_A 189 LLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAK-RHNIYSNILGFLGGVSWAMLVARTCQLYPN--AIA 265 (514)
T ss_dssp GGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHH-HTTCBCTTTTSBCHHHHHHHHHHHHHHSTT--CCH
T ss_pred hhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHH-HcCCCccccCCccHHHHHHHHHHHHHhCCC--CCH
Confidence 112234456677778999999999999998 899999999999999999999999998653 234
Q ss_pred hHHHHHHhhcccccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHHHHhhccCCCCCCCCCCC-CCCCcc
Q 005180 234 LAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSR-SFPPKH 312 (710)
Q Consensus 234 L~LL~~FFeyYs~FDw~~~~ISI~GPv~lsslp~~~~e~p~~~g~~~ll~ke~lr~~~~~fs~~~rg~e~~~~-~f~~k~ 312 (710)
..+|.+||+||++|||.+ .|.+..+ +. |. + ..+.|..... ..+.+.
T Consensus 266 ~~LL~~FF~~y~~~dw~~-pV~l~~~--------------~~-~~---l--------------~~~~w~p~~~~~dr~~~ 312 (514)
T 1q79_A 266 STLVHKFFLVFSKWEWPN-PVLLKQP--------------EE-CN---L--------------NLPVWDPRVNPSDRYHL 312 (514)
T ss_dssp HHHHHHHHHHHHSCCTTS-CBCSSCC--------------CC-CS---S--------------CCCCCCTTTCGGGGGCS
T ss_pred HHHHHHHHHHHhcCCCCC-CeEeccc--------------CC-CC---C--------------CCcccCCccCCcCcccc
Confidence 568899999999999987 3333211 00 10 0 0011211100 011346
Q ss_pred eEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHHHHhhhc
Q 005180 313 LNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILS 353 (710)
Q Consensus 313 L~IeDP~d~snNlGRSVs~~~~~rIr~aF~~A~~~L~~il~ 353 (710)
|+|+||+++.+|+|++|++.++.+|++||++|++.|.+++.
T Consensus 313 m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~ 353 (514)
T 1q79_A 313 MPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILL 353 (514)
T ss_dssp SCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998775
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.67 E-value=8.1e-15 Score=161.31 Aligned_cols=234 Identities=18% Similarity=0.203 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhcCCCceeeeccccCCCCC-CCCceEEeecCCCcc-hHHHHHHHH
Q 005180 42 AEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLP-DGDIDLTAFGGLNVE-EALANDVCS 119 (710)
Q Consensus 42 le~~i~efv~~i~PT~eE~~~R~~VI~~Lq~iI~~~p~a~V~~FGS~~tGL~Lp-~SDIDL~I~~~~~~~-~~~~~~L~~ 119 (710)
+++.+++|+++|.|+++|.+.-..+++.|...|+. .++++...||++.||+|+ +|||||+|..+.... +++...-..
T Consensus 3 ~~~~~~~~l~~i~P~~~E~~~~~~~~~~I~~~L~~-~~~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~~e~l~~~~l~ 81 (437)
T 1r89_A 3 VEEILEKALELVIPDEEEVRKGREAEEELRRRLDE-LGVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKEELRERGLE 81 (437)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH-HTCCEEEEHHHHHTCCCTTCCEEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHh-CCCeEEEeccccCCCcCCCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 47788999999999999999999999999999988 568999999999999999 599999999987643 222222222
Q ss_pred HHHHHhhccccccceeEEEEEeeeeeEEEEeeCCEEEEEe--eecCCc--chh-hHHHHHHHHHhcCCch-hHHHHHHHH
Q 005180 120 VLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDIS--FNQLGG--LST-LCFLEQVDRLIGKDHL-FKRSIILIK 193 (710)
Q Consensus 120 ~L~~~~~~~~a~f~Vk~V~~I~ARVPIIKf~~~gI~VDIS--fNn~~g--i~~-s~fLe~v~~~i~~dp~-fr~LvllIK 193 (710)
+++... .. ...-.|.-|-|.....|++|||. +....| +.+ .+....-..++.+... ++.+|++||
T Consensus 82 ~~~e~l----~~-----~~~~ya~hpyV~~~f~g~~vDVVP~y~v~~g~~~~tavDrtp~H~~fv~~r~~~~~~~VRLLK 152 (437)
T 1r89_A 82 IGKAVL----DS-----YEIRYAEHPYVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGKENEVRLLK 152 (437)
T ss_dssp HHHHHS----SS-----EEEEESSSEEEEEEETTEEEEEEEEECCSSSSCCCSHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred HHHHHH----HH-----hhhhccCCceEEEEecceEEEEEEEEEccCCccccccccCcHHHHHHHHhhhhhhhhHHHHHH
Confidence 332211 11 12226778998888899999994 443322 322 2221112344443222 889999999
Q ss_pred HHHHHhhCccCC--CCCCCChHHHHHHHHHHHHhcCCCCCCch-HHHHHHhhcccccccccceEEccCCcccCCCCcccc
Q 005180 194 AWCYYESRILGA--HHGLISTYALETLVLYIFHLFHSSLNGPL-AVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVV 270 (710)
Q Consensus 194 ~Wak~~r~In~a--~~GgLSSYaL~LMVI~fLQ~~~p~l~~pL-~LL~~FFeyYs~FDw~~~~ISI~GPv~lsslp~~~~ 270 (710)
+|++ ..+++++ +.+|+|||++.||+++| +.. .+|..+. +|.. ++.|.
T Consensus 153 ~f~k-~~~~ygse~k~~gfSsYllELLv~~y---------G~f~~vl~~~~------~w~~-~~~Id------------- 202 (437)
T 1r89_A 153 GFLK-ANGIYGAEYKVRGFSGYLCELLIVFY---------GSFLETVKNAR------RWTR-RTVID------------- 202 (437)
T ss_dssp HHHH-HTTCBCCSTTTCCBCHHHHHHHHHHH---------SSHHHHHHHHT------TCCT-TEEEE-------------
T ss_pred HHHH-hCCcCCCcccCCCCCHHHHHHHHHHH---------cCHHHHHHHHH------HhCC-CeEEe-------------
Confidence 9998 7888875 67899999999999993 122 2443333 3432 22221
Q ss_pred ccCCCCCCCcccCHHHHHHHHhhccCCCCCCCCCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHH
Q 005180 271 ETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGAR 346 (710)
Q Consensus 271 e~p~~~g~~~ll~ke~lr~~~~~fs~~~rg~e~~~~~f~~k~L~IeDP~d~snNlGRSVs~~~~~rIr~aF~~A~~ 346 (710)
+ + + +. ..| ..+|.|.||.+++||+|++++..++.++..+-+...+
T Consensus 203 -----------~--~--------~-----~~----~~~-~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~ 247 (437)
T 1r89_A 203 -----------V--A--------K-----GE----VRK-GEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFME 247 (437)
T ss_dssp -----------G--G--------G-----TE----EEE-CSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------c--C--------C-----Cc----ccC-CCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHHh
Confidence 0 0 0 00 011 3568999999999999999998888887666544433
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.52 E-value=6.8e-13 Score=142.28 Aligned_cols=254 Identities=22% Similarity=0.330 Sum_probs=140.3
Q ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHh-hc-C-------CCceeeeccccCCCCC-CCCceEEeecCCCc--c
Q 005180 44 EATQGII-AQVQPTVVSEERRKAVIDYVQRLIRN-YL-G-------CEVFPFGSVPLKTYLP-DGDIDLTAFGGLNV--E 110 (710)
Q Consensus 44 ~~i~efv-~~i~PT~eE~~~R~~VI~~Lq~iI~~-~p-~-------a~V~~FGS~~tGL~Lp-~SDIDL~I~~~~~~--~ 110 (710)
..+++|+ +.|+|+.++...-+.+++.|...|+. .. + .+++..||++.||+++ .|||||+|+.+... +
T Consensus 9 ~~l~~fi~~~l~p~~~~~~~i~~~~~~I~~~L~~~~~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~l~~~~~~~ 88 (349)
T 1px5_A 9 RDLDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLTKLTSFE 88 (349)
T ss_dssp GGHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC--------CEEEEEEEEEESCSCTT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhhcccccCCcceEEEEEecCcCCCcccCCCCceeEEEEECCCCchh
Confidence 3567777 89999999998888889999999885 21 1 2677889999999999 69999999987521 1
Q ss_pred ------hHHHHHHHHHHHHHhhccccccceeEEEEE--eeeeeE-EEEee------CCEEEEEe--eecCCcc-------
Q 005180 111 ------EALANDVCSVLEREDQNKAAEFVVKDAQLI--RAEVKL-VKCLV------QNIVVDIS--FNQLGGL------- 166 (710)
Q Consensus 111 ------~~~~~~L~~~L~~~~~~~~a~f~Vk~V~~I--~ARVPI-IKf~~------~gI~VDIS--fNn~~gi------- 166 (710)
..+++.|.+.|+...+. ..+.+ ..++. .-+.|- |.+.. .++.|||. |++...+
T Consensus 89 ~~~~~~~~~l~~i~~~L~~~~~~--~~~~~-~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~~~~~~~ 165 (349)
T 1px5_A 89 DQLRRRGEFIQEIRRQLEACQRE--QKFKV-TFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPN 165 (349)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH--CCCSS-EEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCCTTSCCC
T ss_pred hHHhhHHHHHHHHHHHHHHhhhh--hcccc-ceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcccccccCCC
Confidence 12345555566543221 12221 12222 113452 45544 37999975 3432111
Q ss_pred -------------------hhhHHHHHHHHHh-cCCchhHHHHHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhc
Q 005180 167 -------------------STLCFLEQVDRLI-GKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLF 226 (710)
Q Consensus 167 -------------------~~s~fLe~v~~~i-~~dp~fr~LvllIK~Wak~~r~In~a~~GgLSSYaL~LMVI~fLQ~~ 226 (710)
...++.+.=..++ .+...+|.+|++||+|.+ .... +....+++||+|+||+++.+...
T Consensus 166 ~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~-~~~~-~~~~~~~ssy~lELL~~~a~e~~ 243 (349)
T 1px5_A 166 PEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQ-TCKK-THGNKLPPQYALELLTVYAWEQG 243 (349)
T ss_dssp HHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHH-HHHT-TCSSCCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHH-Hhhh-cccCCCCChHHHHHHHHHHHHhC
Confidence 0111111111222 234568999999999986 3322 23457999999999999988754
Q ss_pred CCCCCCc-hHHHHHHhhcccccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHHHHhhccCCCCCCCCCC
Q 005180 227 HSSLNGP-LAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNS 305 (710)
Q Consensus 227 ~p~l~~p-L~LL~~FFeyYs~FDw~~~~ISI~GPv~lsslp~~~~e~p~~~g~~~ll~ke~lr~~~~~fs~~~rg~e~~~ 305 (710)
...-.-+ .+-+..+|++-.+ |...+|-... + +-+..+..+....
T Consensus 244 ~~~~~~~~~~~f~~vle~l~~--~~~~~i~w~~----------------~----y~~~~~~~~~fl~------------- 288 (349)
T 1px5_A 244 SRKTDFSTAQGFQTVLELVLK--HQKLCIFWEA----------------Y----YDFTNPVVGRCML------------- 288 (349)
T ss_dssp TCCSSCCHHHHHHHHHHHHHT--GGGCEECCCS----------------S----CCSSSHHHHHHHH-------------
T ss_pred CCccCCCHHHHHHHHHHHHHh--CCccceeeec----------------c----ccccchhHHhhhh-------------
Confidence 3221112 2356666666654 4444553321 0 0011111111100
Q ss_pred CCCCCcceEEeCCCCCCCCcccCcCHHHHHHHH
Q 005180 306 RSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIR 338 (710)
Q Consensus 306 ~~f~~k~L~IeDP~d~snNlGRSVs~~~~~rIr 338 (710)
.++......|.||.+|+||||.+ +...+..+.
T Consensus 289 ~~l~~~~p~I~DP~dp~~NVa~~-~~~~~~~~~ 320 (349)
T 1px5_A 289 QQLKKPRPVILDPADPTGNVGGG-DTHSWQRLA 320 (349)
T ss_dssp HHHTSSSCEEBCTTCTTCBTTCS-CHHHHHHHH
T ss_pred hhhcCCCCeeeCCCCCCCcccCC-chhhHHHHH
Confidence 00112336899999999999988 665566654
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=97.65 E-value=0.01 Score=63.83 Aligned_cols=183 Identities=17% Similarity=0.202 Sum_probs=105.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHh---hcCC------CceeeeccccCCCCC-CCCceEEeecCCCcchH----HHH
Q 005180 50 IAQVQPTVVSEERRKAVIDYVQRLIRN---YLGC------EVFPFGSVPLKTYLP-DGDIDLTAFGGLNVEEA----LAN 115 (710)
Q Consensus 50 v~~i~PT~eE~~~R~~VI~~Lq~iI~~---~p~a------~V~~FGS~~tGL~Lp-~SDIDL~I~~~~~~~~~----~~~ 115 (710)
-+.|.|+++|...-..++++|+++|.. .|+. .|...||++.|+++. +-|+|+||+....-... +.+
T Consensus 35 ~~~l~Ps~eEq~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~G~~~~dlVvl~k~lPT~e~v~~L~~ 114 (364)
T 4at7_A 35 NQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGN 114 (364)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCTTCCEEEEEEEESSCCBHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceecCCCceeEEEEecCCCCHHHHHHHHH
Confidence 357899999999999999999999885 2443 588899999999999 68899999886532222 345
Q ss_pred HHHHHHHHHhhccccccce--e--EEEEE--eeeeeEEEEee--------CCEEEEE--eeecCCcchhhHHHHHHHHHh
Q 005180 116 DVCSVLEREDQNKAAEFVV--K--DAQLI--RAEVKLVKCLV--------QNIVVDI--SFNQLGGLSTLCFLEQVDRLI 179 (710)
Q Consensus 116 ~L~~~L~~~~~~~~a~f~V--k--~V~~I--~ARVPIIKf~~--------~gI~VDI--SfNn~~gi~~s~fLe~v~~~i 179 (710)
+|.+-|+.. .....+.+ . .+.+. .+.|-|+--+. .....|. +.....+++.+++. +...
T Consensus 115 kV~e~L~~q--~~~e~~~~~~~e~~~~I~~~~~~v~i~It~tsp~lrk~dp~~~Ld~~~cl~aLaalRhAkWf---q~na 189 (364)
T 4at7_A 115 KVVESLRAQ--DPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWF---EENA 189 (364)
T ss_dssp HHHHHHHHH--CTTSCCEEEEETTEEEEECSSCEEEEEEEECHHHHHTCCTTTBCCHHHHHHHHHHHHHHHHH---HHHC
T ss_pred HHHHHhhhh--ccccceeeccCcceEEEecCCCcEEEEEEeCChhhccCChhHhcCHHHHHHHHHHhhhhHHH---Hhhc
Confidence 555555432 11000100 0 01111 23322221110 0122221 11222334444433 2222
Q ss_pred cCCchhHHHHHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcCCCCCCch---HHHHHHhhccc
Q 005180 180 GKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPL---AVLYKFLDYFS 245 (710)
Q Consensus 180 ~~dp~fr~LvllIK~Wak~~r~In~a~~GgLSSYaL~LMVI~fLQ~~~p~l~~pL---~LL~~FFeyYs 245 (710)
....++.+++++|..++ + . +.-+.|+.|++.||+.+-+-.-.. ..|| ..|.++|+.-+
T Consensus 190 -~~s~v~~lIRIlkDlc~-R-~---~~w~pL~~waLELL~~~Ai~s~~~--~~~l~~~~afRRVLElLA 250 (364)
T 4at7_A 190 -SQSTVKVLIRLLKDLRI-R-F---PGFEPLTPWILDLLGHYAVMNNPT--RQPLALNVAYRRCLQILA 250 (364)
T ss_dssp -CCHHHHHHHHHHHHHHH-H-C---GGGTTCCHHHHHHHHHHHHHSSTT--SSCCCHHHHHHHHHHHHH
T ss_pred -cccccceeehhhHHHHH-h-c---CCcCCCCHHHHHHHHHHHHhcCCC--CCCcCHHHHHHHHHHHHH
Confidence 23556789999999775 2 2 122679999999999997764211 1233 35677766653
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.53 E-value=0.00019 Score=64.79 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhc-CCCceeeeccccCCCCCCCCceEEeecCCC
Q 005180 65 AVIDYVQRLIRNYL-GCEVFPFGSVPLKTYLPDGDIDLTAFGGLN 108 (710)
Q Consensus 65 ~VI~~Lq~iI~~~p-~a~V~~FGS~~tGL~Lp~SDIDL~I~~~~~ 108 (710)
+.++.|.+++++.+ ..+|.+|||++.|-+.++|||||+|.....
T Consensus 12 ~~~~~i~~~l~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 56 (114)
T 1no5_A 12 EELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEP 56 (114)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEGGGTTTCCCTTCCEEEEEECSSC
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeccCCCCCCCCCCeEEEEEeCCC
Confidence 34556677777654 578999999999999999999999998653
No 14
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.41 E-value=0.00031 Score=61.93 Aligned_cols=39 Identities=28% Similarity=0.129 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCceeeeccccCCCCCCCCceEEeecCC
Q 005180 69 YVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (710)
Q Consensus 69 ~Lq~iI~~~p~a~V~~FGS~~tGL~Lp~SDIDL~I~~~~ 107 (710)
.++.+++.+.-..|.+|||++.|.+.++|||||+|....
T Consensus 15 ~i~~l~~~~~v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 15 AVLSLCARHGAVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp HHHHHHHHHTCSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 344444455557899999999999999999999998754
No 15
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=97.29 E-value=0.00032 Score=61.63 Aligned_cols=42 Identities=19% Similarity=0.390 Sum_probs=35.4
Q ss_pred HHHHHHHHHHh-hcCCCceeeeccccCCCCCC-CCceEEeecCC
Q 005180 66 VIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPD-GDIDLTAFGGL 107 (710)
Q Consensus 66 VI~~Lq~iI~~-~p~a~V~~FGS~~tGL~Lp~-SDIDL~I~~~~ 107 (710)
+++.+.+.+++ ++..+|.+|||++.|-+.++ |||||+|+.+.
T Consensus 3 ~l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 45667777775 45689999999999999999 99999998764
No 16
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.47 E-value=0.0022 Score=58.07 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHH----hhcC-CCceeeeccccCCCCCCCCceEEeecCC
Q 005180 61 ERRKAVIDYVQRLIR----NYLG-CEVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (710)
Q Consensus 61 ~~R~~VI~~Lq~iI~----~~p~-a~V~~FGS~~tGL~Lp~SDIDL~I~~~~ 107 (710)
..+.++++.+++++. .+++ .+|.+|||++.|-+.++|||||+|....
T Consensus 10 ~~~~~i~~~l~~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 10 ESQIRMLKLAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 345555666655554 3445 5799999999999999999999998764
No 17
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=96.46 E-value=0.079 Score=57.47 Aligned_cols=187 Identities=16% Similarity=0.217 Sum_probs=101.7
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHh---hcC---------------------------------------CCceeeecc
Q 005180 51 AQVQPTVVSEERRKAVIDYVQRLIRN---YLG---------------------------------------CEVFPFGSV 88 (710)
Q Consensus 51 ~~i~PT~eE~~~R~~VI~~Lq~iI~~---~p~---------------------------------------a~V~~FGS~ 88 (710)
..|-|+++|.+.-+.+|..+++.++. |.. .-|.-.|++
T Consensus 21 ~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~l 100 (383)
T 4at7_B 21 SSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLV 100 (383)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEecee
Confidence 45779999999999999999998873 310 015568999
Q ss_pred ccCCCCC-CCCceEEeecCCCcchHHHHHHHHHHHHHhhccc-cccceeEEEEE-eeeeeEEEEeeCCEEEEEeeecC--
Q 005180 89 PLKTYLP-DGDIDLTAFGGLNVEEALANDVCSVLEREDQNKA-AEFVVKDAQLI-RAEVKLVKCLVQNIVVDISFNQL-- 163 (710)
Q Consensus 89 ~tGL~Lp-~SDIDL~I~~~~~~~~~~~~~L~~~L~~~~~~~~-a~f~Vk~V~~I-~ARVPIIKf~~~gI~VDISfNn~-- 163 (710)
+-||.+. +-++||||++...-...+++.|.+.|-...+... ..+.|.. .+ .|.+=|-......+.|=|++...
T Consensus 101 aKGlLLkGd~~veLVvlck~kPT~~ll~~va~~L~~qL~~~t~~~y~v~~--~~~ea~i~i~~~~~p~~~v~I~lTSp~~ 178 (383)
T 4at7_B 101 AKGLLLKGDLDLELVLLCKEKPTTALLDKVADNLAIQLTTVTEDKYEILQ--SVDDAAIVIKNTKEPPLSLTIHLTSPVV 178 (383)
T ss_dssp HHTCCCTTCCEEEEEEEESSCCBHHHHHHHHHHHHHHHTTTCCCCCEEEE--EGGGTEEEEECSSSSCCEEEEEEECHHH
T ss_pred cccceECCCCceeEEEEeCCCCcHHHHHHHHHHHHHHHhhccCCceEEee--cCCcceEEEecCCCCCeEEEEEECCccc
Confidence 9999997 7899999998764334555566555533211111 1232211 11 23222211111134444443211
Q ss_pred -------------------Ccch-hhHH--HHHHH--HHhcC--C--chhHHHHHHHHHHHHHhhCccCCCCCCCChHHH
Q 005180 164 -------------------GGLS-TLCF--LEQVD--RLIGK--D--HLFKRSIILIKAWCYYESRILGAHHGLISTYAL 215 (710)
Q Consensus 164 -------------------~gi~-~s~f--Le~v~--~~i~~--d--p~fr~LvllIK~Wak~~r~In~a~~GgLSSYaL 215 (710)
.-+. ..|+ |..++ ++++. . +....+++++|..++ |. . --+.|+.|+|
T Consensus 179 re~~~~~~~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~--R~-~--~~~pL~~waL 253 (383)
T 4at7_B 179 REEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCT--RV-P--TWGPLRGWPL 253 (383)
T ss_dssp HHHHHHHHTTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHH--HC-G--GGGGGTTHHH
T ss_pred ccchhhcccccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHH--hc-C--CcCCCcHhHH
Confidence 0010 0111 11111 12222 1 235678889999775 22 1 1256889999
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHhhccc
Q 005180 216 ETLVLYIFHLFHSSLNGPLAVLYKFLDYFS 245 (710)
Q Consensus 216 ~LMVI~fLQ~~~p~l~~pL~LL~~FFeyYs 245 (710)
.||+.+-+-. ..+-.++-..|.++|+.-+
T Consensus 254 ELL~~~ai~s-~~~~l~~~~afRRVLElla 282 (383)
T 4at7_B 254 ELLCEKSIGT-ANRPMGAGEALRRVLECLA 282 (383)
T ss_dssp HHHHHHHHHT-SSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC-CCCCCCHHHHHHHHHHHHh
Confidence 9999998763 2211122235667766654
No 18
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=94.86 E-value=0.011 Score=60.45 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHh-hc--CCCceeeeccccCCCCCCCCceEEeecCC
Q 005180 65 AVIDYVQRLIRN-YL--GCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (710)
Q Consensus 65 ~VI~~Lq~iI~~-~p--~a~V~~FGS~~tGL~Lp~SDIDL~I~~~~ 107 (710)
++++.+...+++ +. -..|.+|||++.|-+.++|||||+|....
T Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 14 KIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 344444444443 44 36799999999999999999999998754
No 19
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=94.80 E-value=0.019 Score=59.09 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHH----hhcC-CCceeeeccccCCCCCCCCceEEeecCC
Q 005180 62 RRKAVIDYVQRLIR----NYLG-CEVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (710)
Q Consensus 62 ~R~~VI~~Lq~iI~----~~p~-a~V~~FGS~~tGL~Lp~SDIDL~I~~~~ 107 (710)
.|+.+.+.|+++++ .+++ .+|.+|||++.|-+.++|||||+|+...
T Consensus 18 ~~q~Vq~eL~~ive~L~~~~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 18 YFQGVQHTIARWVDRLREEYADAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred ChHHHHHHHHHHHHHHHHhcCCceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 34444444444433 2343 5799999999999999999999999755
No 20
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=81.38 E-value=1 Score=47.15 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCC-CceeeeccccCCCCCCCCceEEeecCC
Q 005180 55 PTVVSEERRKAVIDYVQRLIRNYLGC-EVFPFGSVPLKTYLPDGDIDLTAFGGL 107 (710)
Q Consensus 55 PT~eE~~~R~~VI~~Lq~iI~~~p~a-~V~~FGS~~tGL~Lp~SDIDL~I~~~~ 107 (710)
|.--..+..+++++.|.++++.-..+ .|.++||+++|..-..|||||+++...
T Consensus 16 ~~~~~m~~~~e~l~~I~~~~~~d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~ 69 (287)
T 3jz0_A 16 PRGSHMLKQKELIANVKNLTESDERITACMMYGSFTKGEGDQYSDIEFYIFLKH 69 (287)
T ss_dssp ------CHHHHHHHHHHHHHHHCTTEEEEEECSGGGTTCCCTTCCEEEEEEECG
T ss_pred CCCCCccCHHHHHHHHHHHHhcCCCEEEEEEECCccCCCCCCccceeEEEEEcC
Confidence 33333345567788888888765654 589999999998888999999998755
No 21
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=78.55 E-value=18 Score=38.32 Aligned_cols=118 Identities=16% Similarity=0.089 Sum_probs=66.6
Q ss_pred HHHHHHHHh-hcCCCceeeeccccCCCCCCCCceEEeecCCCc-----chHHHHHHHHHHHHHhhccccccceeEEEEE-
Q 005180 68 DYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNV-----EEALANDVCSVLEREDQNKAAEFVVKDAQLI- 140 (710)
Q Consensus 68 ~~Lq~iI~~-~p~a~V~~FGS~~tGL~Lp~SDIDL~I~~~~~~-----~~~~~~~L~~~L~~~~~~~~a~f~Vk~V~~I- 140 (710)
+.|.+.++. -+.++|.+-||+.-|--+ .+||||+|..+... .+.+...|.+.|... .+ +..+...
T Consensus 160 ~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~------~~-v~~~l~~g 231 (335)
T 2fmp_A 160 DIVLNEVKKVDSEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKV------HF-ITDTLSKG 231 (335)
T ss_dssp HHHHHHHHHHCTTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHT------TS-EEEEEEEC
T ss_pred HHHHHHHHhcCCCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhC------Cc-ceeeeecC
Confidence 334444443 367999999999988776 68999999987421 123455666666542 22 3332222
Q ss_pred eeeeeEE-EEee-------CCEEEEEeeecCCcchhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhCcc
Q 005180 141 RAEVKLV-KCLV-------QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRIL 203 (710)
Q Consensus 141 ~ARVPII-Kf~~-------~gI~VDISfNn~~gi~~s~fLe~v~~~i~~dp~fr~LvllIK~Wak~~r~In 203 (710)
..+.-+| ++.. .++.|||-+-......++ ++ .+-+. +..-+-|+.||+ ++|+.
T Consensus 232 ~~k~~~v~~l~~~~~~~~~~~~rVDl~~vp~~~~~~a-Ll----~fTGS----~~fnr~lR~~A~-~kG~k 292 (335)
T 2fmp_A 232 ETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCG-VL----YFTGS----DIFNKNMRAHAL-EKGFT 292 (335)
T ss_dssp SSEEEEEECCCCCTTCCCCCCEEEEEEECCGGGHHHH-HH----HHHCC----HHHHHHHHHHHH-HTTEE
T ss_pred CceEEEEEEeCCcccccCCCceEEEEEEECHHHHHHH-HH----HhhCC----HHHHHHHHHHHH-HcCCc
Confidence 3343333 2222 179999988655443333 22 12222 223356788886 66654
No 22
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=61.98 E-value=46 Score=31.80 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhh--cCCCceeeeccc---cCCCCCCCCceEEeecCCCcchHHHHHHHHHHHHHhhccccccceeEE
Q 005180 63 RKAVIDYVQRLIRNY--LGCEVFPFGSVP---LKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDA 137 (710)
Q Consensus 63 R~~VI~~Lq~iI~~~--p~a~V~~FGS~~---tGL~Lp~SDIDL~I~~~~~~~~~~~~~L~~~L~~~~~~~~a~f~Vk~V 137 (710)
|+.+.+.+++++..+ -++.-.+.||++ .|.-.+.-||||.+.. .-+..+.++|+. +..+..
T Consensus 15 ~~~~~~~L~~i~~~L~~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~~------~da~~~~~~L~~--------~g~~~~ 80 (169)
T 2fcl_A 15 RPEYLRVLRXIYDRLXNEXVNWVVTGSLSFALQGVPVEVHDIDIQTDE------EGAYEIERIFSE--------FVSXXV 80 (169)
T ss_dssp CHHHHHHHHHHHHHHTTSSCCEEEEHHHHHHHTTCCCCCCSEEEEECH------HHHHHHHHHTGG--------GEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCEEEeHHHHHHHcCCCCCCCccEEEecc------cCHHHHHHHHHH--------Hhhccc
Confidence 455666666666643 478889999976 5777889999999932 223455566643 222222
Q ss_pred EEE-eeee--eEEEEeeCCEEEEEee
Q 005180 138 QLI-RAEV--KLVKCLVQNIVVDISF 160 (710)
Q Consensus 138 ~~I-~ARV--PIIKf~~~gI~VDISf 160 (710)
... .... =...+...++.|||..
T Consensus 81 ~~~~~~~~~~~f~~~~i~~v~VDlm~ 106 (169)
T 2fcl_A 81 RFSSTEXICSHFGELIIDGIXVEIMG 106 (169)
T ss_dssp EEEECSSEEEEEEEEEETTEEEEEEE
T ss_pred CCCccccccceeeEEeeCCEEEEeee
Confidence 111 1111 1334556788888874
No 23
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=60.67 E-value=53 Score=34.78 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=65.3
Q ss_pred HHHHHHHHHh-hcCCCceeeeccccCCCCCCCCceEEeecCCCc-chHHHHHHHHHHHHHhhccccccceeEEEEEe---
Q 005180 67 IDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNV-EEALANDVCSVLEREDQNKAAEFVVKDAQLIR--- 141 (710)
Q Consensus 67 I~~Lq~iI~~-~p~a~V~~FGS~~tGL~Lp~SDIDL~I~~~~~~-~~~~~~~L~~~L~~~~~~~~a~f~Vk~V~~I~--- 141 (710)
.+.|.+.++. -+.++|.+-||+.-|--+ .+||||+|..+... ...++..|...|... .+ +..+....
T Consensus 156 a~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~ll~~v~~~l~~~------~~-i~~~l~~~~~~ 227 (335)
T 2bcq_A 156 EQTVQKAAQAFNSGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSHRGIFSRLLDSLRQE------GF-LTDDLVSQEEN 227 (335)
T ss_dssp HHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTTTTCHHHHHHHHHHT------TC-EEEEEECCTTS
T ss_pred HHHHHHHHHhcCCCcEEEEccccccCCCC-CCCeEEEEecCCchhhhhHHHHHHHHHHhC------Cc-hHHHhhccccC
Confidence 3444445554 367999999999988876 67999999976532 233445565666442 12 22211110
Q ss_pred e---ee-eEEEEee---CCEEEEEeeecCCcchhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhCcc
Q 005180 142 A---EV-KLVKCLV---QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRIL 203 (710)
Q Consensus 142 A---RV-PIIKf~~---~gI~VDISfNn~~gi~~s~fLe~v~~~i~~dp~fr~LvllIK~Wak~~r~In 203 (710)
. ++ =|.++.. .++.|||-+-......++ ++ .+-+. +..-+-|+.||+ ++|+.
T Consensus 228 g~~~k~~~v~~l~~~~~~~~rVDl~~vp~~~~g~A-Ll----~fTGS----~~fnr~lR~~A~-~~G~k 286 (335)
T 2bcq_A 228 GQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACA-LL----YFTGS----AHFNRSMRALAK-TKGMS 286 (335)
T ss_dssp TTCCEEEEEECCSSTTCCCEEEEEEECCGGGHHHH-HH----HHHCC----HHHHHHHHHHHH-HTTCE
T ss_pred CCCceEEEEEEccCCCCCceEEEEEEECHHHHHHH-HH----HhhCC----HHHHHHHHHHHH-HcCCC
Confidence 1 21 1112221 589999988655443333 22 12222 223456888886 55553
No 24
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=42.41 E-value=23 Score=37.99 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=39.0
Q ss_pred HHHHHHHHHh-hcCCCceeeeccccCCCCCCCCceEEeecCCCc-chHHHHHHHHHHHH
Q 005180 67 IDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNV-EEALANDVCSVLER 123 (710)
Q Consensus 67 I~~Lq~iI~~-~p~a~V~~FGS~~tGL~Lp~SDIDL~I~~~~~~-~~~~~~~L~~~L~~ 123 (710)
.+.|.+.++. .|.++|.+-||+.-|--. .+||||+|..+... ...++..|...|..
T Consensus 163 ~~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~ll~~v~~~L~~ 220 (360)
T 2ihm_A 163 QQLIEAAVRQTLPGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQEVGLLPKVMSCLQS 220 (360)
T ss_dssp HHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEccccccCCCc-cCCeEEEEecCChhhhhhHHHHHHHHHHh
Confidence 3344444443 478999999999998876 67999999987542 33455666666654
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=38.30 E-value=42 Score=36.23 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=36.4
Q ss_pred HHHHHHHh-hcCCCceeeeccccCCCCCCCCceEEeecCCCcc-hH--HHHHHHHHHHH
Q 005180 69 YVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVE-EA--LANDVCSVLER 123 (710)
Q Consensus 69 ~Lq~iI~~-~p~a~V~~FGS~~tGL~Lp~SDIDL~I~~~~~~~-~~--~~~~L~~~L~~ 123 (710)
.|.+.++. -+.++|.+-|||.-|--. .+||||+|..+.... .. ++..|.+.|..
T Consensus 185 ~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~~~ll~~vv~~L~~ 242 (381)
T 1jms_A 185 LVKEAVVTFLPDALVTMTGGFRRGKMT-GHDVDFLITSPEATEDEEQQLLHKVTDFWKQ 242 (381)
T ss_dssp HHHHHHHHHCTTCEEEECHHHHTTCSC-BSSEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcEEEEccccccCCCC-cCCeEEEEeCCCccccchhhHHHHHHHHHHh
Confidence 33444443 478999999999998876 579999999876431 11 44455555544
No 26
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase, translocation, single tranded RNA polymerase, RNA protein complex, processivity, heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} SCOP: e.69.1.1 PDB: 3er8_C* 3erc_C* 3owg_A 2ga9_D* 2gaf_D
Probab=28.39 E-value=37 Score=37.11 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=38.7
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHHhh---cCCCceeeeccccCCCCCC---CCceEEee
Q 005180 34 IGAEYWQRAEEATQGIIAQVQPTVVSEERRKA---VIDYVQRLIRNY---LGCEVFPFGSVPLKTYLPD---GDIDLTAF 104 (710)
Q Consensus 34 i~~~~w~~le~~i~efv~~i~PT~eE~~~R~~---VI~~Lq~iI~~~---p~a~V~~FGS~~tGL~Lp~---SDIDL~I~ 104 (710)
.+.....++-+++-+-++..+|++.+...|.. ++..|.++++++ -+-.+..||||..-+--|. +|||+.=.
T Consensus 129 ~d~~s~~~la~~iL~synv~~~~~~~vmgRh~VSdLV~~V~klmeEyLrrhNk~CicYGSySlhlLNp~I~YgDIDilqT 208 (479)
T 3er9_B 129 YNVTSMEELARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRRHNKSCICYGSYSLYLINPNIRYGDIDILQT 208 (479)
T ss_dssp -CGGGGHHHHHHHHHHHCCCC-----------CCTTHHHHHHHHHHHHHHCTTTEEEESHHHHHTTCTTCCCCSCEEEES
T ss_pred echHHHHHHHHHHHHhcccccCCcccccccccccHHHHHHHHHHHHHHHhcCCCeEEeeceeeeecCCCcccCCcceeee
Confidence 34444444433333333445666545556665 366666666654 4678999999998887664 99999765
Q ss_pred c
Q 005180 105 G 105 (710)
Q Consensus 105 ~ 105 (710)
.
T Consensus 209 N 209 (479)
T 3er9_B 209 N 209 (479)
T ss_dssp S
T ss_pred c
Confidence 3
No 27
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=27.15 E-value=38 Score=35.13 Aligned_cols=43 Identities=19% Similarity=-0.024 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhcCC-CceeeeccccCC--CCCCCCceEEeecCC
Q 005180 65 AVIDYVQRLIRNYLGC-EVFPFGSVPLKT--YLPDGDIDLTAFGGL 107 (710)
Q Consensus 65 ~VI~~Lq~iI~~~p~a-~V~~FGS~~tGL--~Lp~SDIDL~I~~~~ 107 (710)
++++.|.++.+.-..+ -|.+.||.+++- .=.-||+||+++...
T Consensus 8 em~~~i~~~a~~d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d 53 (294)
T 2pbe_A 8 EMMDIFLDFALNDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTD 53 (294)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEC------------CCCEEEEEEESC
T ss_pred HHHHHHHHHHcCCcCEEEEEEecCCCCCCCCCCCcccceEEEEEcC
Confidence 5777777777765554 488899999966 566799999999864
No 28
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=24.56 E-value=3.7e+02 Score=30.16 Aligned_cols=111 Identities=16% Similarity=0.082 Sum_probs=61.8
Q ss_pred HHHHHHHHHhh-cCCCceeeeccccCCCCCCCCceEEeecCCCcchHHHHHHHHHHHHHhhccccccceeEEEEE-eeee
Q 005180 67 IDYVQRLIRNY-LGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEV 144 (710)
Q Consensus 67 I~~Lq~iI~~~-p~a~V~~FGS~~tGL~Lp~SDIDL~I~~~~~~~~~~~~~L~~~L~~~~~~~~a~f~Vk~V~~I-~ARV 144 (710)
.+.|.+.++.. +.++|.+-||+.-|--+ .+||||+|..+.. ..|.+.|... . .+..+..- ..++
T Consensus 167 ~~~i~~~l~~~~~~~~~~~~Gs~RRgke~-~gDiD~li~~~~~------~~v~~~l~~~------~-~~~~~~~~g~~k~ 232 (575)
T 3b0x_A 167 ARSLLEAIRALPGVERAELCGSARRYKDT-VGDLDFLVASREG------ERAVEGFVRL------P-QVKEVYAKGKERA 232 (575)
T ss_dssp HHHHHHHHHTSTTCCEEEECHHHHTTCSE-ESSEEEEEECSSH------HHHHHHHHTS------T-TEEEEEEECSSEE
T ss_pred HHHHHHHHHhCCCCcEEEEccccccCCCc-cCCeEEEEeCCCH------HHHHHHHHhC------c-chhhHhhcCCCce
Confidence 34444444443 46899999999988765 5699999997652 1344444321 1 23332111 2222
Q ss_pred eEEEEeeCCEEEEEeeecCCcchhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhCcc
Q 005180 145 KLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRIL 203 (710)
Q Consensus 145 PIIKf~~~gI~VDISfNn~~gi~~s~fLe~v~~~i~~dp~fr~LvllIK~Wak~~r~In 203 (710)
-+ + ...|+.|||-+-......++ ++ .+-+. +..-+-|+.||+ ++++.
T Consensus 233 ~~-~-~~~~~rvDl~~~~~~~~~~a-l~----~~TGs----~~~n~~lR~~A~-~~g~~ 279 (575)
T 3b0x_A 233 TV-F-LKNGLQVDLRVVPPESYGAG-LQ----YLTGS----AAHSIRLRALAQ-EKGLK 279 (575)
T ss_dssp EE-E-ETTSCEEEEEEECGGGHHHH-HH----HHHCC----HHHHHHHHHHHH-HTTCE
T ss_pred EE-E-ccCCcEEEEEEECHHHHHHH-HH----HhhCC----HHHHHHHHHHHH-HcCCC
Confidence 22 1 12589999988755443333 22 12222 233456888897 66654
Done!