Query 005181
Match_columns 710
No_of_seqs 403 out of 4407
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 19:23:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.6E-65 1.2E-69 568.5 34.6 470 25-506 161-651 (889)
2 PLN03210 Resistant to P. syrin 100.0 1E-57 2.2E-62 539.5 44.2 622 21-704 183-888 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.1E-39 2.3E-44 331.9 12.9 276 27-311 1-284 (287)
4 KOG4194 Membrane glycoprotein 99.9 4.6E-29 1E-33 251.2 0.5 315 377-709 99-439 (873)
5 PLN00113 leucine-rich repeat r 99.9 2.3E-27 5.1E-32 281.9 13.1 318 378-706 116-448 (968)
6 PLN00113 leucine-rich repeat r 99.9 1.4E-26 3E-31 275.3 13.6 316 379-705 139-471 (968)
7 KOG4194 Membrane glycoprotein 99.9 6.5E-27 1.4E-31 235.8 3.4 295 399-704 75-383 (873)
8 KOG0444 Cytoskeletal regulator 99.9 4E-28 8.8E-33 245.9 -10.6 270 376-657 51-326 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 3.4E-25 7.3E-30 224.9 -8.7 313 380-706 7-336 (1255)
10 KOG0472 Leucine-rich repeat pr 99.8 1.9E-23 4.2E-28 202.0 -10.9 264 377-657 42-307 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 5E-23 1.1E-27 199.2 -10.2 300 379-701 182-543 (565)
12 PLN03210 Resistant to P. syrin 99.8 2.3E-19 4.9E-24 213.6 17.5 298 374-696 552-903 (1153)
13 PRK15387 E3 ubiquitin-protein 99.8 2.5E-18 5.5E-23 189.6 13.0 264 382-708 203-467 (788)
14 KOG0618 Serine/threonine phosp 99.8 1.2E-20 2.5E-25 201.2 -5.1 302 381-705 46-426 (1081)
15 KOG0618 Serine/threonine phosp 99.7 2.6E-20 5.6E-25 198.6 -8.4 257 428-709 241-499 (1081)
16 PRK15387 E3 ubiquitin-protein 99.7 1.1E-16 2.3E-21 176.9 14.0 239 403-705 202-441 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 3.7E-17 8E-22 181.8 8.6 226 428-699 199-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 3E-17 6.6E-22 182.5 6.4 244 381-659 179-427 (754)
19 KOG0617 Ras suppressor protein 99.6 2.1E-18 4.5E-23 148.1 -5.2 169 442-645 25-194 (264)
20 KOG4237 Extracellular matrix p 99.6 8E-18 1.7E-22 163.3 -2.6 254 380-635 67-358 (498)
21 KOG4237 Extracellular matrix p 99.6 3.3E-18 7.1E-23 165.9 -5.7 126 429-562 68-199 (498)
22 PRK04841 transcriptional regul 99.6 4.1E-14 8.8E-19 167.9 26.2 310 12-362 4-332 (903)
23 KOG0617 Ras suppressor protein 99.6 1.1E-17 2.4E-22 143.6 -4.7 159 424-590 29-188 (264)
24 COG2909 MalT ATP-dependent tra 99.5 4E-13 8.8E-18 144.0 20.3 316 9-364 6-340 (894)
25 cd00116 LRR_RI Leucine-rich re 99.5 2.9E-16 6.3E-21 162.6 -4.2 237 419-658 14-289 (319)
26 cd00116 LRR_RI Leucine-rich re 99.5 3.2E-15 7E-20 154.8 -2.0 254 401-658 22-318 (319)
27 PRK00411 cdc6 cell division co 99.4 4E-11 8.8E-16 127.6 26.3 312 17-352 25-375 (394)
28 TIGR02928 orc1/cdc6 family rep 99.4 6.9E-11 1.5E-15 124.5 25.4 305 17-339 10-352 (365)
29 COG2256 MGS1 ATPase related to 99.3 2.4E-11 5.2E-16 120.0 12.1 221 21-273 29-262 (436)
30 PF01637 Arch_ATPase: Archaeal 99.2 3.8E-11 8.1E-16 118.2 11.2 197 24-228 1-233 (234)
31 TIGR03015 pepcterm_ATPase puta 99.2 3.2E-09 6.9E-14 106.8 21.1 190 35-233 40-242 (269)
32 KOG1259 Nischarin, modulator o 99.1 9.3E-12 2E-16 117.1 1.1 180 420-611 206-411 (490)
33 TIGR00635 ruvB Holliday juncti 99.1 1.1E-09 2.4E-14 112.2 15.5 270 22-336 4-288 (305)
34 KOG1909 Ran GTPase-activating 99.1 5.5E-12 1.2E-16 121.6 -1.9 234 421-658 23-309 (382)
35 PF05729 NACHT: NACHT domain 99.1 4.3E-10 9.4E-15 104.1 10.9 144 39-195 1-163 (166)
36 KOG2028 ATPase related to the 99.1 1.9E-09 4.1E-14 104.5 14.4 194 3-223 124-330 (554)
37 KOG0532 Leucine-rich repeat (L 99.1 2.4E-12 5.2E-17 131.3 -6.0 194 427-634 74-271 (722)
38 PRK00080 ruvB Holliday junctio 99.1 3.2E-09 6.8E-14 109.4 16.2 273 21-337 24-310 (328)
39 COG4886 Leucine-rich repeat (L 99.1 8.3E-11 1.8E-15 125.4 4.1 182 423-616 111-294 (394)
40 COG4886 Leucine-rich repeat (L 99.1 9.2E-11 2E-15 125.1 4.3 198 431-641 96-295 (394)
41 KOG3207 Beta-tubulin folding c 99.1 1.9E-11 4.2E-16 121.1 -1.1 88 550-637 245-340 (505)
42 KOG3207 Beta-tubulin folding c 99.0 2.2E-11 4.7E-16 120.8 -1.0 202 449-658 119-337 (505)
43 PTZ00112 origin recognition co 99.0 1.5E-08 3.3E-13 110.3 20.1 303 18-339 751-1088(1164)
44 PF14580 LRR_9: Leucine-rich r 99.0 1.5E-10 3.4E-15 105.1 3.4 128 425-583 16-148 (175)
45 KOG0532 Leucine-rich repeat (L 99.0 1.7E-11 3.7E-16 125.2 -3.8 197 432-643 54-253 (722)
46 COG1474 CDC6 Cdc6-related prot 98.9 8E-08 1.7E-12 98.8 19.9 299 16-341 11-338 (366)
47 KOG1259 Nischarin, modulator o 98.9 1.8E-10 3.8E-15 108.6 -0.8 130 427-589 283-413 (490)
48 PF13173 AAA_14: AAA domain 98.9 9.4E-09 2E-13 90.0 8.8 122 38-186 2-126 (128)
49 KOG1909 Ran GTPase-activating 98.9 6.2E-11 1.3E-15 114.5 -5.5 240 445-699 24-311 (382)
50 COG3899 Predicted ATPase [Gene 98.8 1.4E-07 3E-12 108.1 18.4 315 23-362 1-386 (849)
51 PRK06893 DNA replication initi 98.8 2.3E-08 5E-13 97.0 10.5 149 37-227 38-201 (229)
52 PRK13342 recombination factor 98.8 7.4E-08 1.6E-12 102.4 13.9 169 22-226 12-193 (413)
53 KOG2120 SCF ubiquitin ligase, 98.8 1.2E-10 2.5E-15 109.8 -7.2 176 428-609 185-373 (419)
54 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.4E-13 93.0 5.1 114 389-507 6-123 (175)
55 PLN03150 hypothetical protein; 98.7 9.7E-09 2.1E-13 114.6 5.0 107 531-637 420-529 (623)
56 KOG4658 Apoptotic ATPase [Sign 98.7 1E-08 2.3E-13 116.7 4.5 156 395-562 516-679 (889)
57 PF13401 AAA_22: AAA domain; P 98.7 3.4E-08 7.3E-13 87.2 6.6 117 36-161 2-125 (131)
58 COG3903 Predicted ATPase [Gene 98.7 9.1E-08 2E-12 95.8 9.3 294 35-361 11-313 (414)
59 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.2E-07 4.7E-12 90.7 11.9 156 35-229 35-201 (226)
60 PRK12402 replication factor C 98.6 2.5E-07 5.5E-12 96.4 13.0 191 22-226 15-223 (337)
61 KOG2982 Uncharacterized conser 98.6 7.7E-09 1.7E-13 97.7 1.4 219 406-629 49-285 (418)
62 KOG0531 Protein phosphatase 1, 98.6 3.9E-09 8.6E-14 112.6 -1.0 220 424-658 91-316 (414)
63 PLN03150 hypothetical protein; 98.6 1.8E-08 3.9E-13 112.5 4.1 107 552-658 419-526 (623)
64 KOG0531 Protein phosphatase 1, 98.6 2.2E-09 4.8E-14 114.5 -3.3 216 425-658 69-288 (414)
65 PRK14961 DNA polymerase III su 98.6 5.1E-07 1.1E-11 94.1 13.9 187 21-224 15-215 (363)
66 PF13855 LRR_8: Leucine rich r 98.6 2.2E-08 4.8E-13 74.6 2.3 58 552-609 2-59 (61)
67 PRK07003 DNA polymerase III su 98.6 2E-06 4.3E-11 93.8 17.9 192 22-229 16-221 (830)
68 PRK14949 DNA polymerase III su 98.6 7.6E-07 1.6E-11 99.0 14.5 195 21-229 15-221 (944)
69 PRK09112 DNA polymerase III su 98.6 1.2E-06 2.5E-11 90.0 14.8 199 15-226 16-237 (351)
70 PRK14960 DNA polymerase III su 98.6 2.2E-06 4.7E-11 92.5 17.2 189 21-225 14-215 (702)
71 PF13855 LRR_8: Leucine rich r 98.5 4.4E-08 9.6E-13 73.0 2.8 59 599-657 1-59 (61)
72 PF05496 RuvB_N: Holliday junc 98.5 6.4E-07 1.4E-11 83.3 11.0 164 20-224 22-216 (233)
73 PRK05564 DNA polymerase III su 98.5 1.3E-06 2.8E-11 89.4 14.2 171 22-226 4-187 (313)
74 PLN03025 replication factor C 98.5 7.3E-07 1.6E-11 91.5 12.1 174 22-224 13-195 (319)
75 PRK09087 hypothetical protein; 98.5 2.4E-06 5.1E-11 82.4 14.1 140 38-228 44-194 (226)
76 KOG2120 SCF ubiquitin ligase, 98.5 1.2E-09 2.5E-14 103.2 -8.4 178 451-658 185-374 (419)
77 KOG4341 F-box protein containi 98.5 3.4E-09 7.5E-14 104.9 -5.6 277 381-663 139-442 (483)
78 PRK08727 hypothetical protein; 98.5 2.3E-06 5E-11 83.2 14.1 148 37-226 40-201 (233)
79 PRK04195 replication factor C 98.5 7.9E-06 1.7E-10 88.8 19.6 170 21-226 13-199 (482)
80 TIGR00678 holB DNA polymerase 98.5 2.1E-06 4.4E-11 81.0 13.2 89 123-224 95-186 (188)
81 PRK06645 DNA polymerase III su 98.5 1.8E-06 4E-11 92.4 14.0 193 21-224 20-224 (507)
82 PRK14957 DNA polymerase III su 98.5 2.3E-06 5E-11 92.2 14.7 177 22-230 16-222 (546)
83 PRK07471 DNA polymerase III su 98.5 3.5E-06 7.6E-11 87.0 15.3 197 18-226 15-235 (365)
84 PTZ00202 tuzin; Provisional 98.5 1.2E-05 2.5E-10 81.9 18.2 161 17-195 257-434 (550)
85 PRK07940 DNA polymerase III su 98.5 2.7E-06 5.8E-11 88.6 14.3 183 22-226 5-210 (394)
86 PRK14963 DNA polymerase III su 98.5 1.5E-06 3.3E-11 93.5 12.8 190 22-226 14-214 (504)
87 PRK00440 rfc replication facto 98.5 8.3E-06 1.8E-10 84.3 18.0 173 22-225 17-199 (319)
88 cd00009 AAA The AAA+ (ATPases 98.5 9.9E-07 2.1E-11 79.6 9.8 116 26-162 2-130 (151)
89 PRK07994 DNA polymerase III su 98.5 1.6E-06 3.5E-11 94.9 12.9 195 21-229 15-221 (647)
90 PRK14956 DNA polymerase III su 98.4 9.3E-07 2E-11 92.6 10.5 190 21-224 17-217 (484)
91 PRK08084 DNA replication initi 98.4 2.5E-06 5.3E-11 83.2 12.8 150 35-226 42-206 (235)
92 PRK13341 recombination factor 98.4 6.6E-07 1.4E-11 100.0 9.8 167 22-224 28-212 (725)
93 PRK12323 DNA polymerase III su 98.4 1.7E-06 3.8E-11 93.0 12.3 192 21-225 15-221 (700)
94 TIGR01242 26Sp45 26S proteasom 98.4 3.8E-06 8.3E-11 87.9 14.6 170 21-223 121-328 (364)
95 PRK14962 DNA polymerase III su 98.4 5.4E-06 1.2E-10 88.5 15.8 213 21-247 13-239 (472)
96 PF00308 Bac_DnaA: Bacterial d 98.4 3.3E-06 7.2E-11 81.1 12.4 158 38-226 34-205 (219)
97 KOG4341 F-box protein containi 98.4 4.6E-09 1E-13 104.0 -7.4 265 402-672 138-426 (483)
98 PRK05896 DNA polymerase III su 98.4 2E-06 4.3E-11 92.7 11.8 197 21-231 15-223 (605)
99 PF13191 AAA_16: AAA ATPase do 98.4 2.4E-07 5.1E-12 87.4 4.0 55 23-79 1-63 (185)
100 PRK14087 dnaA chromosomal repl 98.4 1.6E-05 3.6E-10 84.7 18.3 188 39-250 142-348 (450)
101 PRK08691 DNA polymerase III su 98.4 5.2E-06 1.1E-10 90.6 14.1 189 21-225 15-216 (709)
102 PRK14955 DNA polymerase III su 98.4 1.5E-06 3.3E-11 91.7 9.7 194 21-224 15-223 (397)
103 TIGR02397 dnaX_nterm DNA polym 98.3 9E-06 2E-10 85.4 15.3 175 20-226 12-215 (355)
104 PRK08903 DnaA regulatory inact 98.3 2.4E-06 5.3E-11 83.2 9.9 155 36-233 40-203 (227)
105 PRK14964 DNA polymerase III su 98.3 6.6E-06 1.4E-10 87.4 13.7 172 21-224 12-212 (491)
106 PRK03992 proteasome-activating 98.3 4.5E-06 9.8E-11 87.7 12.3 169 21-222 130-336 (389)
107 PRK14958 DNA polymerase III su 98.3 1.9E-05 4E-10 85.4 17.2 188 22-225 16-216 (509)
108 KOG1859 Leucine-rich repeat pr 98.3 3.8E-09 8.2E-14 111.2 -10.7 124 531-659 166-291 (1096)
109 TIGR03345 VI_ClpV1 type VI sec 98.3 2.1E-06 4.5E-11 98.6 10.1 179 21-223 186-390 (852)
110 KOG1859 Leucine-rich repeat pr 98.3 2E-09 4.3E-14 113.2 -12.9 132 551-702 164-295 (1096)
111 TIGR00362 DnaA chromosomal rep 98.3 2.4E-05 5.2E-10 83.3 17.4 185 38-250 136-337 (405)
112 PF14516 AAA_35: AAA-like doma 98.3 0.00025 5.4E-09 72.9 24.2 212 19-242 8-252 (331)
113 PRK14951 DNA polymerase III su 98.3 8.3E-06 1.8E-10 89.2 13.6 193 21-226 15-222 (618)
114 PRK14954 DNA polymerase III su 98.3 6.1E-06 1.3E-10 90.6 12.4 195 21-224 15-223 (620)
115 PRK00149 dnaA chromosomal repl 98.3 2.1E-05 4.6E-10 84.8 16.3 183 38-250 148-349 (450)
116 PRK05642 DNA replication initi 98.3 9.2E-06 2E-10 79.0 12.1 150 38-226 45-205 (234)
117 PRK14969 DNA polymerase III su 98.3 9.2E-06 2E-10 88.4 13.2 192 22-229 16-221 (527)
118 cd01128 rho_factor Transcripti 98.2 3.4E-06 7.4E-11 82.0 8.5 99 36-136 14-115 (249)
119 TIGR02639 ClpA ATP-dependent C 98.2 2E-06 4.2E-11 98.2 7.8 154 22-195 182-358 (731)
120 PRK09111 DNA polymerase III su 98.2 1.5E-05 3.3E-10 87.4 14.3 192 21-226 23-230 (598)
121 PRK14970 DNA polymerase III su 98.2 1.9E-05 4.1E-10 83.1 14.5 173 21-224 16-204 (367)
122 TIGR02881 spore_V_K stage V sp 98.2 6.7E-06 1.5E-10 81.8 10.4 136 37-196 41-192 (261)
123 PRK12422 chromosomal replicati 98.2 6.1E-05 1.3E-09 80.1 17.7 155 39-223 142-307 (445)
124 PRK07133 DNA polymerase III su 98.2 2E-05 4.2E-10 87.1 14.2 190 21-229 17-220 (725)
125 KOG2227 Pre-initiation complex 98.2 3E-05 6.6E-10 78.8 14.3 211 14-231 142-374 (529)
126 PRK07764 DNA polymerase III su 98.2 2E-05 4.3E-10 89.5 14.6 188 22-224 15-216 (824)
127 PRK14088 dnaA chromosomal repl 98.2 7.2E-05 1.6E-09 79.8 17.9 184 38-250 130-332 (440)
128 PRK14959 DNA polymerase III su 98.2 2.3E-05 4.9E-10 85.2 14.0 196 21-233 15-225 (624)
129 PRK14952 DNA polymerase III su 98.2 2.4E-05 5.3E-10 85.3 14.3 198 21-232 12-223 (584)
130 PRK14950 DNA polymerase III su 98.2 9.6E-06 2.1E-10 89.9 11.3 190 21-226 15-218 (585)
131 KOG2543 Origin recognition com 98.2 2.5E-05 5.5E-10 77.3 12.3 169 20-195 4-193 (438)
132 PRK06305 DNA polymerase III su 98.1 3.9E-05 8.4E-10 82.0 14.7 191 21-224 16-217 (451)
133 PHA02544 44 clamp loader, smal 98.1 5.1E-05 1.1E-09 78.2 15.3 142 21-193 20-171 (316)
134 KOG2982 Uncharacterized conser 98.1 5.1E-07 1.1E-11 85.7 0.0 78 429-506 46-130 (418)
135 PRK05707 DNA polymerase III su 98.1 6.1E-05 1.3E-09 76.7 14.5 170 38-226 22-200 (328)
136 PRK14953 DNA polymerase III su 98.1 6.5E-05 1.4E-09 80.8 15.3 191 22-226 16-217 (486)
137 COG2255 RuvB Holliday junction 98.1 5.6E-05 1.2E-09 72.0 12.9 171 21-235 25-226 (332)
138 PRK06620 hypothetical protein; 98.1 2.3E-05 5E-10 74.9 10.7 134 39-226 45-186 (214)
139 PRK09376 rho transcription ter 98.1 5.6E-06 1.2E-10 83.9 6.6 100 35-136 166-268 (416)
140 PF12799 LRR_4: Leucine Rich r 98.1 3.4E-06 7.3E-11 57.3 3.5 38 452-489 2-39 (44)
141 PRK15386 type III secretion pr 98.1 1.3E-05 2.7E-10 82.3 9.1 134 424-585 48-187 (426)
142 TIGR03689 pup_AAA proteasome A 98.1 2.2E-05 4.7E-10 83.8 11.3 157 22-195 182-378 (512)
143 PRK08451 DNA polymerase III su 98.1 7.4E-05 1.6E-09 80.3 15.2 190 21-226 13-215 (535)
144 PRK14971 DNA polymerase III su 98.1 3.9E-05 8.4E-10 84.9 13.5 189 21-224 16-217 (614)
145 PRK14086 dnaA chromosomal repl 98.1 0.00015 3.2E-09 78.6 17.2 157 39-226 315-485 (617)
146 CHL00095 clpC Clp protease ATP 98.1 9.8E-06 2.1E-10 93.7 8.8 153 22-194 179-353 (821)
147 PTZ00454 26S protease regulato 98.1 5.2E-05 1.1E-09 79.3 13.2 169 22-223 145-351 (398)
148 TIGR03346 chaperone_ClpB ATP-d 98.0 1.4E-05 3.1E-10 92.6 9.8 151 22-195 173-349 (852)
149 TIGR02903 spore_lon_C ATP-depe 98.0 2.9E-05 6.3E-10 86.2 11.6 173 21-196 153-367 (615)
150 PRK10865 protein disaggregatio 98.0 2.2E-05 4.9E-10 90.6 10.9 152 21-195 177-354 (857)
151 PF12799 LRR_4: Leucine Rich r 98.0 4.6E-06 9.9E-11 56.7 3.2 40 428-467 1-40 (44)
152 PRK07399 DNA polymerase III su 98.0 7.9E-05 1.7E-09 75.5 13.2 188 22-226 4-218 (314)
153 PRK14948 DNA polymerase III su 98.0 5.4E-05 1.2E-09 83.8 12.9 192 21-226 15-219 (620)
154 KOG4579 Leucine-rich repeat (L 98.0 2.2E-07 4.9E-12 77.8 -4.4 83 423-505 48-131 (177)
155 TIGR02880 cbbX_cfxQ probable R 98.0 0.00013 2.8E-09 73.2 13.8 135 40-197 60-210 (284)
156 COG1222 RPT1 ATP-dependent 26S 98.0 9.5E-05 2E-09 72.9 12.2 168 22-223 151-357 (406)
157 smart00382 AAA ATPases associa 98.0 5.2E-05 1.1E-09 67.7 10.0 89 38-137 2-91 (148)
158 COG0593 DnaA ATPase involved i 98.0 0.00045 9.7E-09 71.2 17.4 132 37-197 112-259 (408)
159 CHL00181 cbbX CbbX; Provisiona 97.9 0.00024 5.3E-09 71.1 15.2 136 39-197 60-211 (287)
160 PTZ00361 26 proteosome regulat 97.9 8.1E-05 1.8E-09 78.4 12.2 148 22-196 183-368 (438)
161 COG5238 RNA1 Ran GTPase-activa 97.9 3.6E-06 7.9E-11 79.0 1.8 182 424-610 26-253 (388)
162 KOG0730 AAA+-type ATPase [Post 97.9 0.00014 3.1E-09 77.3 13.6 151 21-198 433-618 (693)
163 PRK06647 DNA polymerase III su 97.9 0.00018 4E-09 78.7 14.8 188 22-225 16-216 (563)
164 PF00004 AAA: ATPase family as 97.9 3.3E-05 7.1E-10 68.0 7.6 21 41-61 1-21 (132)
165 KOG4579 Leucine-rich repeat (L 97.9 1.3E-06 2.8E-11 73.3 -1.4 127 430-565 29-160 (177)
166 KOG0989 Replication factor C, 97.9 1.6E-05 3.4E-10 76.5 5.5 174 21-223 35-224 (346)
167 CHL00176 ftsH cell division pr 97.9 0.00011 2.4E-09 81.3 12.9 168 22-222 183-387 (638)
168 TIGR00767 rho transcription te 97.9 4.2E-05 9.1E-10 78.1 8.8 101 35-137 165-268 (415)
169 PRK05563 DNA polymerase III su 97.9 0.00018 3.9E-09 79.0 14.4 190 21-224 15-215 (559)
170 COG1373 Predicted ATPase (AAA+ 97.9 0.00021 4.5E-09 75.2 14.2 123 40-192 39-164 (398)
171 PRK14965 DNA polymerase III su 97.9 0.00011 2.4E-09 81.1 12.8 195 21-229 15-221 (576)
172 COG5238 RNA1 Ran GTPase-activa 97.9 2.9E-06 6.2E-11 79.7 0.0 234 399-636 27-316 (388)
173 PRK15386 type III secretion pr 97.9 7.9E-05 1.7E-09 76.5 10.0 33 599-634 156-188 (426)
174 KOG0744 AAA+-type ATPase [Post 97.8 0.00015 3.3E-09 70.2 10.9 141 38-195 177-340 (423)
175 PRK11034 clpA ATP-dependent Cl 97.8 6.7E-05 1.4E-09 84.7 9.6 152 22-195 186-362 (758)
176 TIGR01241 FtsH_fam ATP-depende 97.8 0.00026 5.6E-09 77.4 13.7 181 38-251 88-296 (495)
177 COG3267 ExeA Type II secretory 97.8 0.00088 1.9E-08 63.3 15.0 187 35-231 48-247 (269)
178 PRK08769 DNA polymerase III su 97.8 0.00045 9.8E-09 69.8 14.1 91 123-226 112-205 (319)
179 PRK08058 DNA polymerase III su 97.8 0.00023 5E-09 73.1 12.3 70 123-194 109-181 (329)
180 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00024 5.2E-09 74.6 12.2 168 22-222 190-395 (802)
181 PRK06871 DNA polymerase III su 97.8 0.0005 1.1E-08 69.6 14.1 167 38-224 24-198 (325)
182 PF05621 TniB: Bacterial TniB 97.8 0.0007 1.5E-08 66.5 14.5 182 35-223 58-255 (302)
183 PRK08116 hypothetical protein; 97.7 0.00014 2.9E-09 72.2 8.6 103 38-162 114-221 (268)
184 PRK11331 5-methylcytosine-spec 97.7 0.00011 2.3E-09 76.5 7.8 116 22-147 175-298 (459)
185 PRK08181 transposase; Validate 97.7 0.00012 2.6E-09 72.0 7.8 102 36-162 104-209 (269)
186 KOG0733 Nuclear AAA ATPase (VC 97.7 0.0009 1.9E-08 70.5 14.2 157 38-223 545-718 (802)
187 KOG3665 ZYG-1-like serine/thre 97.6 2.8E-05 6.1E-10 86.8 2.9 125 380-506 122-259 (699)
188 KOG1644 U2-associated snRNP A' 97.6 6.9E-05 1.5E-09 67.7 4.7 123 431-584 22-149 (233)
189 COG1223 Predicted ATPase (AAA+ 97.6 0.00056 1.2E-08 64.2 10.8 168 19-223 118-319 (368)
190 TIGR01243 CDC48 AAA family ATP 97.6 0.00057 1.2E-08 78.5 13.3 154 37-223 486-657 (733)
191 PF05673 DUF815: Protein of un 97.6 0.0012 2.5E-08 62.8 12.8 44 18-61 23-75 (249)
192 PRK10536 hypothetical protein; 97.6 0.00035 7.5E-09 67.2 9.3 136 22-162 55-213 (262)
193 PRK07993 DNA polymerase III su 97.6 0.00075 1.6E-08 69.1 12.3 168 37-224 23-199 (334)
194 CHL00195 ycf46 Ycf46; Provisio 97.6 0.00097 2.1E-08 71.5 13.4 156 37-223 258-429 (489)
195 PLN00020 ribulose bisphosphate 97.5 0.002 4.2E-08 65.0 14.1 26 36-61 146-171 (413)
196 TIGR01243 CDC48 AAA family ATP 97.5 0.00038 8.2E-09 80.0 10.5 170 21-223 177-381 (733)
197 PF13177 DNA_pol3_delta2: DNA 97.5 0.00053 1.2E-08 62.4 9.4 118 38-183 19-162 (162)
198 PF10443 RNA12: RNA12 protein; 97.5 0.012 2.7E-07 60.6 19.8 207 35-248 14-297 (431)
199 TIGR00602 rad24 checkpoint pro 97.5 0.00045 9.8E-09 76.0 10.2 41 21-61 83-133 (637)
200 PRK06526 transposase; Provisio 97.5 0.0002 4.4E-09 70.1 6.6 27 36-62 96-122 (254)
201 PRK06090 DNA polymerase III su 97.5 0.0026 5.6E-08 64.3 14.3 165 38-226 25-198 (319)
202 PRK09183 transposase/IS protei 97.5 0.00038 8.3E-09 68.7 8.3 38 36-75 100-137 (259)
203 PRK06921 hypothetical protein; 97.5 0.00053 1.1E-08 67.9 9.2 38 37-76 116-154 (266)
204 PRK06964 DNA polymerase III su 97.5 0.0031 6.7E-08 64.4 14.8 88 123-225 131-221 (342)
205 KOG0735 AAA+-type ATPase [Post 97.4 0.0027 5.8E-08 68.2 14.2 165 38-230 431-617 (952)
206 KOG1644 U2-associated snRNP A' 97.4 0.00015 3.2E-09 65.6 4.0 104 552-657 43-150 (233)
207 KOG1514 Origin recognition com 97.4 0.0028 6.1E-08 68.2 13.9 200 20-232 394-624 (767)
208 KOG0741 AAA+-type ATPase [Post 97.4 0.0017 3.6E-08 67.3 11.3 149 35-219 535-704 (744)
209 KOG2004 Mitochondrial ATP-depe 97.4 0.00046 9.9E-09 74.0 7.5 153 21-196 410-597 (906)
210 TIGR02639 ClpA ATP-dependent C 97.4 0.0024 5.2E-08 73.2 14.0 53 21-78 453-519 (731)
211 KOG0991 Replication factor C, 97.4 0.00023 5E-09 65.6 4.6 89 21-137 26-126 (333)
212 TIGR00763 lon ATP-dependent pr 97.4 0.00069 1.5E-08 78.1 9.7 155 21-195 319-505 (775)
213 PRK08118 topology modulation p 97.3 0.00033 7.2E-09 64.1 5.6 34 40-73 3-37 (167)
214 COG0466 Lon ATP-dependent Lon 97.3 0.00094 2E-08 72.0 9.6 154 21-196 322-509 (782)
215 PRK08699 DNA polymerase III su 97.3 0.003 6.6E-08 64.4 13.0 68 125-194 114-184 (325)
216 PF01695 IstB_IS21: IstB-like 97.3 0.00022 4.7E-09 66.0 4.0 39 35-75 44-82 (178)
217 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0076 1.6E-07 59.8 15.2 44 38-86 21-64 (262)
218 PRK12377 putative replication 97.3 0.00076 1.6E-08 65.6 7.7 39 36-76 99-137 (248)
219 KOG1969 DNA replication checkp 97.3 0.00073 1.6E-08 72.7 8.1 76 35-137 323-400 (877)
220 PRK07952 DNA replication prote 97.3 0.0011 2.3E-08 64.5 8.3 36 38-75 99-134 (244)
221 COG0470 HolB ATPase involved i 97.2 0.0018 3.9E-08 67.0 10.6 137 24-185 3-171 (325)
222 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0021 4.6E-08 57.4 9.4 120 39-163 3-139 (159)
223 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0075 1.6E-07 70.3 16.6 56 21-78 564-633 (852)
224 PF04665 Pox_A32: Poxvirus A32 97.2 0.0011 2.4E-08 63.5 7.6 37 37-75 12-48 (241)
225 PRK08939 primosomal protein Dn 97.2 0.0013 2.7E-08 66.5 8.4 100 37-161 155-260 (306)
226 KOG0731 AAA+-type ATPase conta 97.2 0.0037 8E-08 69.0 12.5 168 22-225 311-520 (774)
227 KOG3665 ZYG-1-like serine/thre 97.2 0.00027 5.9E-09 79.1 3.9 136 401-539 121-260 (699)
228 cd01120 RecA-like_NTPases RecA 97.1 0.0013 2.8E-08 60.3 7.1 39 40-80 1-39 (165)
229 cd01133 F1-ATPase_beta F1 ATP 97.1 0.002 4.3E-08 63.1 8.4 99 35-136 66-175 (274)
230 KOG2739 Leucine-rich acidic nu 97.1 0.00019 4E-09 67.9 0.9 110 543-655 35-151 (260)
231 KOG0736 Peroxisome assembly fa 97.1 0.0051 1.1E-07 66.9 11.5 173 16-221 666-877 (953)
232 PF02562 PhoH: PhoH-like prote 97.1 0.0015 3.3E-08 61.1 6.8 121 37-162 18-156 (205)
233 TIGR02237 recomb_radB DNA repa 97.1 0.0022 4.9E-08 61.5 8.4 44 37-83 11-54 (209)
234 COG1484 DnaC DNA replication p 97.0 0.0015 3.3E-08 64.1 7.2 76 36-135 103-178 (254)
235 KOG0734 AAA+-type ATPase conta 97.0 0.013 2.8E-07 61.1 13.8 151 16-197 298-486 (752)
236 KOG2739 Leucine-rich acidic nu 97.0 7.9E-05 1.7E-09 70.4 -1.9 88 569-659 37-128 (260)
237 PF00448 SRP54: SRP54-type pro 97.0 0.0023 5E-08 60.1 7.8 57 38-96 1-58 (196)
238 PRK06835 DNA replication prote 97.0 0.002 4.3E-08 65.6 7.8 39 36-76 181-219 (329)
239 PRK09361 radB DNA repair and r 97.0 0.0026 5.7E-08 61.8 8.4 44 36-82 21-64 (225)
240 PRK04132 replication factor C 97.0 0.013 2.8E-07 66.7 14.7 153 43-225 569-727 (846)
241 KOG0743 AAA+-type ATPase [Post 97.0 0.028 6.2E-07 57.9 15.5 149 39-233 236-413 (457)
242 PRK10787 DNA-binding ATP-depen 97.0 0.004 8.8E-08 71.2 10.7 154 21-195 321-506 (784)
243 PRK07132 DNA polymerase III su 97.0 0.02 4.3E-07 57.5 14.3 151 38-228 18-184 (299)
244 PRK10733 hflB ATP-dependent me 97.0 0.0043 9.3E-08 69.8 10.7 133 38-197 185-337 (644)
245 KOG0735 AAA+-type ATPase [Post 96.9 0.016 3.5E-07 62.5 13.9 153 38-223 701-870 (952)
246 COG0464 SpoVK ATPases of the A 96.9 0.0087 1.9E-07 65.7 12.7 134 36-196 274-424 (494)
247 PRK12608 transcription termina 96.9 0.0034 7.4E-08 64.0 8.6 96 37-136 132-232 (380)
248 PRK04296 thymidine kinase; Pro 96.9 0.0011 2.3E-08 62.4 4.6 113 39-163 3-117 (190)
249 PF13207 AAA_17: AAA domain; P 96.9 0.00054 1.2E-08 59.2 2.4 22 40-61 1-22 (121)
250 PRK10865 protein disaggregatio 96.9 0.007 1.5E-07 70.3 12.0 55 21-77 567-635 (857)
251 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0016 3.4E-08 75.4 6.6 41 21-61 565-619 (852)
252 KOG2228 Origin recognition com 96.9 0.028 6.1E-07 55.4 13.9 171 20-196 22-220 (408)
253 COG2884 FtsE Predicted ATPase 96.9 0.014 3E-07 52.7 10.9 132 35-170 25-205 (223)
254 KOG0739 AAA+-type ATPase [Post 96.8 0.013 2.8E-07 56.5 11.1 152 38-223 166-335 (439)
255 COG4088 Predicted nucleotide k 96.8 0.0056 1.2E-07 55.8 8.2 132 39-195 2-139 (261)
256 TIGR02902 spore_lonB ATP-depen 96.8 0.0031 6.7E-08 69.2 8.2 40 22-61 65-109 (531)
257 PRK06067 flagellar accessory p 96.8 0.0053 1.2E-07 60.0 9.1 95 35-134 22-130 (234)
258 CHL00095 clpC Clp protease ATP 96.8 0.0031 6.7E-08 73.3 8.5 41 21-61 508-562 (821)
259 COG2812 DnaX DNA polymerase II 96.8 0.003 6.6E-08 67.3 7.5 185 22-223 16-214 (515)
260 PRK14974 cell division protein 96.8 0.01 2.2E-07 60.6 10.8 93 37-136 139-234 (336)
261 COG0542 clpA ATP-binding subun 96.8 0.0037 8E-08 69.5 8.1 156 21-196 169-347 (786)
262 cd01394 radB RadB. The archaea 96.8 0.0045 9.8E-08 59.8 8.0 43 36-80 17-59 (218)
263 PRK14722 flhF flagellar biosyn 96.8 0.0064 1.4E-07 62.6 9.4 92 36-136 135-227 (374)
264 KOG0729 26S proteasome regulat 96.8 0.0092 2E-07 56.4 9.4 26 36-61 209-234 (435)
265 cd03115 SRP The signal recogni 96.7 0.0095 2.1E-07 55.1 9.5 37 40-78 2-38 (173)
266 PRK11889 flhF flagellar biosyn 96.7 0.013 2.9E-07 60.0 11.0 90 37-135 240-331 (436)
267 KOG0727 26S proteasome regulat 96.7 0.01 2.2E-07 55.7 9.2 75 35-136 186-260 (408)
268 PF13306 LRR_5: Leucine rich r 96.7 0.0018 3.8E-08 56.7 4.3 82 547-632 31-112 (129)
269 PRK07261 topology modulation p 96.7 0.0028 6E-08 58.4 5.7 22 40-61 2-23 (171)
270 cd00544 CobU Adenosylcobinamid 96.7 0.0056 1.2E-07 55.9 7.6 36 41-81 2-37 (169)
271 cd01393 recA_like RecA is a b 96.7 0.008 1.7E-07 58.5 9.2 45 37-83 18-68 (226)
272 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0091 2E-07 58.5 9.6 47 37-83 18-68 (235)
273 smart00763 AAA_PrkA PrkA AAA d 96.7 0.001 2.2E-08 67.4 2.9 43 20-62 49-102 (361)
274 KOG2123 Uncharacterized conser 96.7 8.6E-05 1.9E-09 70.3 -4.5 74 430-505 21-96 (388)
275 TIGR02858 spore_III_AA stage I 96.7 0.013 2.8E-07 57.9 10.4 120 36-165 109-232 (270)
276 PHA00729 NTP-binding motif con 96.7 0.0043 9.4E-08 58.8 6.7 27 35-61 14-40 (226)
277 cd01131 PilT Pilus retraction 96.7 0.0083 1.8E-07 56.8 8.7 109 39-163 2-110 (198)
278 COG0542 clpA ATP-binding subun 96.6 0.0038 8.2E-08 69.4 6.8 113 21-148 490-619 (786)
279 TIGR00708 cobA cob(I)alamin ad 96.6 0.017 3.7E-07 52.3 9.8 122 37-162 4-140 (173)
280 PF07693 KAP_NTPase: KAP famil 96.6 0.088 1.9E-06 54.4 16.7 60 36-95 18-82 (325)
281 PRK00771 signal recognition pa 96.6 0.016 3.4E-07 61.4 11.0 57 36-94 93-150 (437)
282 TIGR02012 tigrfam_recA protein 96.6 0.0036 7.8E-08 63.1 5.9 90 36-134 53-143 (321)
283 PF13306 LRR_5: Leucine rich r 96.6 0.0014 3E-08 57.3 2.7 105 546-655 7-111 (129)
284 PRK10867 signal recognition pa 96.6 0.013 2.8E-07 61.8 10.2 41 36-78 98-139 (433)
285 KOG2035 Replication factor C, 96.6 0.036 7.8E-07 53.1 11.7 221 24-274 15-282 (351)
286 TIGR00959 ffh signal recogniti 96.5 0.016 3.6E-07 61.1 10.7 42 36-78 97-138 (428)
287 PRK12724 flagellar biosynthesi 96.5 0.018 3.8E-07 59.9 10.6 24 38-61 223-246 (432)
288 KOG1947 Leucine rich repeat pr 96.5 0.00014 3.1E-09 80.0 -5.0 110 401-510 187-308 (482)
289 KOG0728 26S proteasome regulat 96.5 0.05 1.1E-06 51.1 12.1 130 35-195 178-331 (404)
290 PRK05541 adenylylsulfate kinas 96.5 0.0088 1.9E-07 55.5 7.6 37 37-75 6-42 (176)
291 TIGR03499 FlhF flagellar biosy 96.5 0.0084 1.8E-07 60.1 7.8 42 37-78 193-234 (282)
292 PF07724 AAA_2: AAA domain (Cd 96.5 0.0051 1.1E-07 56.4 5.7 42 38-81 3-45 (171)
293 PRK14721 flhF flagellar biosyn 96.5 0.027 5.9E-07 59.1 11.7 25 37-61 190-214 (420)
294 cd00983 recA RecA is a bacter 96.5 0.0048 1E-07 62.2 5.8 89 37-134 54-143 (325)
295 PRK05800 cobU adenosylcobinami 96.5 0.0031 6.6E-08 57.8 4.1 82 40-133 3-85 (170)
296 cd01122 GP4d_helicase GP4d_hel 96.4 0.04 8.6E-07 55.3 12.5 68 21-92 14-81 (271)
297 PRK09354 recA recombinase A; P 96.4 0.0054 1.2E-07 62.3 6.1 89 37-134 59-148 (349)
298 PRK11034 clpA ATP-dependent Cl 96.4 0.0074 1.6E-07 68.5 7.7 41 21-61 457-511 (758)
299 PRK05703 flhF flagellar biosyn 96.4 0.021 4.6E-07 60.6 10.6 41 38-78 221-261 (424)
300 PRK05986 cob(I)alamin adenolsy 96.4 0.027 5.9E-07 51.9 9.7 123 37-162 21-158 (191)
301 TIGR00064 ftsY signal recognit 96.4 0.014 3E-07 58.0 8.5 95 36-136 70-166 (272)
302 cd03238 ABC_UvrA The excision 96.4 0.034 7.4E-07 51.2 10.4 26 35-60 18-43 (176)
303 KOG2123 Uncharacterized conser 96.4 0.00022 4.8E-09 67.6 -3.9 99 401-504 18-124 (388)
304 PRK06696 uridine kinase; Valid 96.4 0.0026 5.7E-08 61.6 3.2 27 35-61 19-45 (223)
305 PF13671 AAA_33: AAA domain; P 96.3 0.006 1.3E-07 54.4 5.2 22 40-61 1-22 (143)
306 PTZ00494 tuzin-like protein; P 96.3 0.31 6.7E-06 50.4 17.4 158 20-195 369-544 (664)
307 PF00485 PRK: Phosphoribulokin 96.3 0.01 2.2E-07 56.1 6.8 84 40-128 1-87 (194)
308 PRK12723 flagellar biosynthesi 96.3 0.034 7.3E-07 57.9 11.0 91 37-136 173-266 (388)
309 cd03247 ABCC_cytochrome_bd The 96.3 0.03 6.6E-07 52.0 9.9 27 35-61 25-51 (178)
310 PF14532 Sigma54_activ_2: Sigm 96.3 0.0046 9.9E-08 54.8 4.0 37 25-61 1-44 (138)
311 TIGR03574 selen_PSTK L-seryl-t 96.3 0.018 3.9E-07 56.8 8.7 23 40-62 1-23 (249)
312 PF00006 ATP-synt_ab: ATP synt 96.2 0.011 2.3E-07 56.3 6.5 92 38-136 15-117 (215)
313 PF13604 AAA_30: AAA domain; P 96.2 0.014 2.9E-07 55.2 7.2 103 35-159 15-128 (196)
314 COG1936 Predicted nucleotide k 96.2 0.016 3.5E-07 51.6 7.0 65 40-122 2-66 (180)
315 KOG0730 AAA+-type ATPase [Post 96.2 0.036 7.9E-07 59.6 10.8 156 35-223 215-386 (693)
316 PF12775 AAA_7: P-loop contain 96.2 0.0024 5.2E-08 63.4 2.1 27 35-61 30-56 (272)
317 PRK05973 replicative DNA helic 96.2 0.02 4.3E-07 55.2 8.1 42 36-79 62-103 (237)
318 COG0465 HflB ATP-dependent Zn 96.2 0.043 9.4E-07 59.6 11.5 173 20-225 148-357 (596)
319 PRK12726 flagellar biosynthesi 96.2 0.019 4.1E-07 58.7 8.2 91 36-135 204-296 (407)
320 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.034 7.4E-07 51.9 9.5 22 40-61 1-22 (183)
321 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.024 5.2E-07 55.4 8.7 50 35-88 18-67 (237)
322 PRK15453 phosphoribulokinase; 96.1 0.028 6.1E-07 55.0 8.8 26 36-61 3-28 (290)
323 PF06745 KaiC: KaiC; InterPro 96.1 0.0048 1E-07 60.0 3.4 94 36-134 17-125 (226)
324 COG1136 SalX ABC-type antimicr 96.1 0.11 2.4E-06 49.4 12.3 56 114-169 150-210 (226)
325 COG0468 RecA RecA/RadA recombi 96.1 0.036 7.8E-07 54.6 9.4 48 35-84 57-104 (279)
326 KOG3347 Predicted nucleotide k 96.1 0.0061 1.3E-07 52.4 3.5 73 38-127 7-79 (176)
327 PF01583 APS_kinase: Adenylyls 96.1 0.0054 1.2E-07 54.6 3.4 36 38-75 2-37 (156)
328 TIGR03878 thermo_KaiC_2 KaiC d 96.1 0.012 2.6E-07 58.3 6.1 42 36-79 34-75 (259)
329 KOG0737 AAA+-type ATPase [Post 96.1 0.029 6.3E-07 56.1 8.7 153 36-223 125-296 (386)
330 PRK12727 flagellar biosynthesi 96.1 0.017 3.6E-07 61.7 7.5 43 36-78 348-390 (559)
331 PRK14723 flhF flagellar biosyn 96.0 0.051 1.1E-06 61.0 11.6 88 38-134 185-273 (767)
332 PF13238 AAA_18: AAA domain; P 96.0 0.0044 9.5E-08 54.1 2.8 21 41-61 1-21 (129)
333 cd02019 NK Nucleoside/nucleoti 96.0 0.0037 8E-08 47.5 2.0 22 40-61 1-22 (69)
334 COG4608 AppF ABC-type oligopep 96.0 0.04 8.7E-07 53.2 9.3 129 35-168 36-176 (268)
335 COG1618 Predicted nucleotide k 96.0 0.0046 1E-07 54.1 2.7 26 38-63 5-30 (179)
336 cd01121 Sms Sms (bacterial rad 96.0 0.02 4.4E-07 59.4 7.9 39 38-78 82-120 (372)
337 cd01135 V_A-ATPase_B V/A-type 96.0 0.042 9E-07 53.8 9.4 102 35-137 66-179 (276)
338 CHL00206 ycf2 Ycf2; Provisiona 96.0 0.064 1.4E-06 65.1 12.5 27 35-61 1627-1653(2281)
339 TIGR01425 SRP54_euk signal rec 96.0 0.06 1.3E-06 56.6 11.1 40 36-77 98-137 (429)
340 PF08423 Rad51: Rad51; InterP 96.0 0.018 3.8E-07 56.8 6.9 54 38-92 38-95 (256)
341 PRK06002 fliI flagellum-specif 96.0 0.027 5.7E-07 59.3 8.4 94 37-136 164-266 (450)
342 TIGR03575 selen_PSTK_euk L-ser 95.9 0.032 6.8E-07 56.9 8.7 22 41-62 2-23 (340)
343 TIGR02238 recomb_DMC1 meiotic 95.9 0.025 5.4E-07 57.3 8.0 55 38-93 96-154 (313)
344 PRK06995 flhF flagellar biosyn 95.9 0.064 1.4E-06 57.3 11.3 42 37-78 255-296 (484)
345 PRK04301 radA DNA repair and r 95.9 0.036 7.8E-07 56.8 9.2 56 37-93 101-160 (317)
346 PF07728 AAA_5: AAA domain (dy 95.9 0.0089 1.9E-07 53.0 4.2 41 41-86 2-42 (139)
347 COG1419 FlhF Flagellar GTP-bin 95.9 0.025 5.3E-07 58.0 7.7 61 37-97 202-263 (407)
348 PRK13531 regulatory ATPase Rav 95.9 0.0037 8.1E-08 65.9 1.9 41 21-61 19-62 (498)
349 PLN03187 meiotic recombination 95.9 0.026 5.7E-07 57.7 7.9 57 37-94 125-185 (344)
350 PRK08972 fliI flagellum-specif 95.9 0.032 7E-07 58.4 8.7 95 35-136 159-264 (444)
351 PTZ00185 ATPase alpha subunit; 95.9 0.061 1.3E-06 56.9 10.6 100 35-136 186-301 (574)
352 PRK08233 hypothetical protein; 95.9 0.0064 1.4E-07 56.8 3.3 24 38-61 3-26 (182)
353 TIGR01817 nifA Nif-specific re 95.9 0.078 1.7E-06 58.8 12.3 57 21-79 195-258 (534)
354 TIGR01420 pilT_fam pilus retra 95.9 0.025 5.4E-07 58.6 7.8 94 35-141 119-212 (343)
355 PRK06762 hypothetical protein; 95.8 0.0059 1.3E-07 56.1 2.8 24 38-61 2-25 (166)
356 PRK10416 signal recognition pa 95.8 0.034 7.3E-07 56.6 8.4 40 36-77 112-151 (318)
357 cd02021 GntK Gluconate kinase 95.8 0.11 2.5E-06 46.5 11.2 22 40-61 1-22 (150)
358 TIGR02655 circ_KaiC circadian 95.8 0.022 4.8E-07 62.0 7.4 43 35-79 260-302 (484)
359 TIGR00235 udk uridine kinase. 95.8 0.0078 1.7E-07 57.5 3.5 26 36-61 4-29 (207)
360 PRK15455 PrkA family serine pr 95.8 0.0049 1.1E-07 65.9 2.2 39 23-61 77-126 (644)
361 KOG1051 Chaperone HSP104 and r 95.8 0.027 5.9E-07 63.8 8.1 99 21-137 561-673 (898)
362 PRK04328 hypothetical protein; 95.8 0.047 1E-06 53.7 9.0 42 36-79 21-62 (249)
363 smart00534 MUTSac ATPase domai 95.8 0.076 1.7E-06 49.6 10.0 20 40-59 1-20 (185)
364 PRK09270 nucleoside triphospha 95.8 0.033 7.2E-07 54.1 7.8 28 35-62 30-57 (229)
365 PRK13695 putative NTPase; Prov 95.8 0.03 6.5E-07 51.8 7.2 23 40-62 2-24 (174)
366 PTZ00301 uridine kinase; Provi 95.8 0.0072 1.6E-07 57.4 3.0 24 38-61 3-26 (210)
367 PRK07667 uridine kinase; Provi 95.8 0.011 2.3E-07 55.7 4.2 42 35-78 14-55 (193)
368 COG1066 Sms Predicted ATP-depe 95.8 0.037 8.1E-07 56.3 8.1 87 38-135 93-179 (456)
369 PF08433 KTI12: Chromatin asso 95.8 0.022 4.8E-07 56.3 6.5 109 40-165 3-112 (270)
370 cd03281 ABC_MSH5_euk MutS5 hom 95.7 0.095 2.1E-06 50.1 10.7 23 38-60 29-51 (213)
371 KOG0740 AAA+-type ATPase [Post 95.7 0.07 1.5E-06 55.4 10.3 27 35-61 183-209 (428)
372 cd01132 F1_ATPase_alpha F1 ATP 95.7 0.047 1E-06 53.5 8.5 96 35-137 66-174 (274)
373 cd03223 ABCD_peroxisomal_ALDP 95.7 0.14 2.9E-06 47.0 11.3 27 35-61 24-50 (166)
374 cd02028 UMPK_like Uridine mono 95.7 0.018 3.9E-07 53.4 5.5 22 40-61 1-22 (179)
375 PRK12597 F0F1 ATP synthase sub 95.7 0.036 7.7E-07 58.8 8.2 100 35-136 140-249 (461)
376 cd03283 ABC_MutS-like MutS-lik 95.7 0.065 1.4E-06 50.7 9.2 23 39-61 26-48 (199)
377 PTZ00035 Rad51 protein; Provis 95.7 0.052 1.1E-06 55.8 9.1 56 37-93 117-176 (337)
378 PF03969 AFG1_ATPase: AFG1-lik 95.7 0.04 8.8E-07 57.0 8.3 104 36-163 60-168 (362)
379 cd03214 ABC_Iron-Siderophores_ 95.7 0.11 2.5E-06 48.2 10.7 126 35-165 22-161 (180)
380 TIGR02236 recomb_radA DNA repa 95.7 0.046 1E-06 55.9 8.8 55 37-92 94-152 (310)
381 PRK08149 ATP synthase SpaL; Va 95.7 0.041 8.8E-07 57.8 8.3 95 35-136 148-253 (428)
382 COG0572 Udk Uridine kinase [Nu 95.7 0.0095 2.1E-07 55.8 3.3 25 37-61 7-31 (218)
383 PF00910 RNA_helicase: RNA hel 95.7 0.0072 1.6E-07 50.7 2.3 21 41-61 1-21 (107)
384 PRK05917 DNA polymerase III su 95.7 0.2 4.4E-06 49.7 12.7 58 123-182 94-154 (290)
385 PF07726 AAA_3: ATPase family 95.6 0.003 6.6E-08 53.5 0.0 28 41-70 2-29 (131)
386 PRK05480 uridine/cytidine kina 95.6 0.01 2.3E-07 56.8 3.7 26 36-61 4-29 (209)
387 KOG0742 AAA+-type ATPase [Post 95.6 0.1 2.2E-06 52.8 10.5 27 35-61 381-407 (630)
388 COG2842 Uncharacterized ATPase 95.6 0.1 2.2E-06 51.0 10.1 113 21-148 71-191 (297)
389 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.11 2.4E-06 46.2 10.0 27 35-61 23-49 (144)
390 COG0563 Adk Adenylate kinase a 95.6 0.023 5E-07 52.4 5.6 22 40-61 2-23 (178)
391 PRK06547 hypothetical protein; 95.6 0.01 2.2E-07 54.5 3.3 27 35-61 12-38 (172)
392 PRK05922 type III secretion sy 95.6 0.059 1.3E-06 56.6 9.2 97 35-136 154-259 (434)
393 TIGR02239 recomb_RAD51 DNA rep 95.6 0.037 8.1E-07 56.3 7.6 56 37-93 95-154 (316)
394 cd03216 ABC_Carb_Monos_I This 95.6 0.044 9.5E-07 50.0 7.4 116 35-165 23-145 (163)
395 cd01136 ATPase_flagellum-secre 95.6 0.058 1.3E-06 54.6 8.8 94 36-136 67-171 (326)
396 COG1102 Cmk Cytidylate kinase 95.6 0.0071 1.5E-07 53.0 2.0 44 40-96 2-45 (179)
397 COG1428 Deoxynucleoside kinase 95.6 0.0089 1.9E-07 55.1 2.7 24 38-61 4-27 (216)
398 PF00560 LRR_1: Leucine Rich R 95.5 0.0066 1.4E-07 34.1 1.1 15 477-491 3-17 (22)
399 PF00560 LRR_1: Leucine Rich R 95.5 0.0064 1.4E-07 34.2 1.1 22 452-473 1-22 (22)
400 PRK08927 fliI flagellum-specif 95.5 0.052 1.1E-06 57.1 8.5 95 35-136 155-260 (442)
401 PRK06936 type III secretion sy 95.5 0.056 1.2E-06 56.8 8.7 95 35-136 159-264 (439)
402 cd03282 ABC_MSH4_euk MutS4 hom 95.5 0.23 5.1E-06 47.0 12.2 24 37-60 28-51 (204)
403 cd02029 PRK_like Phosphoribulo 95.5 0.046 1E-06 53.1 7.4 22 40-61 1-22 (277)
404 cd00046 DEXDc DEAD-like helica 95.5 0.06 1.3E-06 47.3 7.9 36 40-75 2-37 (144)
405 COG0467 RAD55 RecA-superfamily 95.5 0.025 5.4E-07 56.2 5.9 43 35-79 20-62 (260)
406 cd03228 ABCC_MRP_Like The MRP 95.5 0.16 3.4E-06 46.8 10.8 27 35-61 25-51 (171)
407 PRK14737 gmk guanylate kinase; 95.4 0.014 3E-07 54.4 3.7 26 36-61 2-27 (186)
408 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.034 7.5E-07 54.1 6.6 41 37-79 19-59 (229)
409 PRK15429 formate hydrogenlyase 95.4 0.05 1.1E-06 62.3 8.8 56 22-79 376-438 (686)
410 PF10236 DAP3: Mitochondrial r 95.4 0.2 4.4E-06 50.9 12.3 49 176-226 258-306 (309)
411 cd02027 APSK Adenosine 5'-phos 95.4 0.1 2.2E-06 46.7 9.1 22 40-61 1-22 (149)
412 KOG2170 ATPase of the AAA+ sup 95.4 0.029 6.2E-07 54.5 5.7 28 35-62 107-134 (344)
413 cd03246 ABCC_Protease_Secretio 95.4 0.087 1.9E-06 48.7 8.9 27 35-61 25-51 (173)
414 cd00984 DnaB_C DnaB helicase C 95.4 0.075 1.6E-06 52.2 9.0 52 38-92 13-64 (242)
415 COG1124 DppF ABC-type dipeptid 95.4 0.021 4.6E-07 53.9 4.6 32 30-61 22-56 (252)
416 cd00227 CPT Chloramphenicol (C 95.4 0.011 2.3E-07 54.8 2.8 24 38-61 2-25 (175)
417 cd02025 PanK Pantothenate kina 95.4 0.017 3.7E-07 55.5 4.3 40 40-79 1-40 (220)
418 PRK11823 DNA repair protein Ra 95.4 0.05 1.1E-06 58.3 8.2 39 38-78 80-118 (446)
419 PF00625 Guanylate_kin: Guanyl 95.4 0.013 2.9E-07 54.7 3.3 35 38-74 2-36 (183)
420 PF13481 AAA_25: AAA domain; P 95.4 0.037 8E-07 52.2 6.4 44 36-79 30-81 (193)
421 COG0194 Gmk Guanylate kinase [ 95.4 0.014 3.1E-07 52.7 3.2 24 38-61 4-27 (191)
422 PRK03846 adenylylsulfate kinas 95.4 0.015 3.2E-07 55.2 3.6 31 31-61 17-47 (198)
423 TIGR03496 FliI_clade1 flagella 95.4 0.07 1.5E-06 56.1 8.9 27 35-61 134-160 (411)
424 KOG0736 Peroxisome assembly fa 95.3 0.086 1.9E-06 57.8 9.5 44 175-224 556-599 (953)
425 cd03230 ABC_DR_subfamily_A Thi 95.3 0.17 3.7E-06 46.7 10.6 27 35-61 23-49 (173)
426 PRK00889 adenylylsulfate kinas 95.3 0.016 3.4E-07 53.8 3.6 26 37-62 3-28 (175)
427 cd03285 ABC_MSH2_euk MutS2 hom 95.3 0.0088 1.9E-07 57.6 2.0 24 36-59 28-51 (222)
428 PRK09280 F0F1 ATP synthase sub 95.3 0.056 1.2E-06 57.1 8.0 100 35-136 141-250 (463)
429 PRK07276 DNA polymerase III su 95.3 0.33 7.1E-06 48.4 13.0 68 123-193 103-173 (290)
430 TIGR00390 hslU ATP-dependent p 95.3 0.02 4.4E-07 59.2 4.6 41 21-61 11-70 (441)
431 COG1116 TauB ABC-type nitrate/ 95.3 0.2 4.3E-06 47.9 10.8 34 28-61 16-52 (248)
432 COG2607 Predicted ATPase (AAA+ 95.3 0.057 1.2E-06 50.8 7.0 40 22-61 60-108 (287)
433 cd01134 V_A-ATPase_A V/A-type 95.3 0.079 1.7E-06 53.5 8.6 43 35-81 154-196 (369)
434 cd01125 repA Hexameric Replica 95.3 0.064 1.4E-06 52.6 8.0 22 40-61 3-24 (239)
435 TIGR00554 panK_bact pantothena 95.3 0.07 1.5E-06 53.3 8.2 26 36-61 60-85 (290)
436 cd00071 GMPK Guanosine monopho 95.3 0.015 3.2E-07 51.3 3.1 21 41-61 2-22 (137)
437 COG1643 HrpA HrpA-like helicas 95.3 0.078 1.7E-06 60.4 9.5 129 35-165 62-208 (845)
438 PRK00131 aroK shikimate kinase 95.3 0.012 2.6E-07 54.5 2.7 25 37-61 3-27 (175)
439 TIGR01360 aden_kin_iso1 adenyl 95.3 0.015 3.3E-07 54.5 3.5 25 37-61 2-26 (188)
440 PRK03839 putative kinase; Prov 95.3 0.011 2.4E-07 55.1 2.4 22 40-61 2-23 (180)
441 TIGR00416 sms DNA repair prote 95.3 0.055 1.2E-06 58.0 7.9 39 38-78 94-132 (454)
442 TIGR03305 alt_F1F0_F1_bet alte 95.3 0.056 1.2E-06 57.0 7.7 100 35-136 135-244 (449)
443 PRK11608 pspF phage shock prot 95.2 0.045 9.7E-07 56.3 6.9 57 21-79 5-68 (326)
444 PRK05688 fliI flagellum-specif 95.2 0.086 1.9E-06 55.7 9.0 26 36-61 166-191 (451)
445 cd01124 KaiC KaiC is a circadi 95.2 0.016 3.4E-07 54.4 3.2 37 41-79 2-38 (187)
446 COG0529 CysC Adenylylsulfate k 95.2 0.016 3.6E-07 51.6 2.9 37 25-61 10-46 (197)
447 cd03243 ABC_MutS_homologs The 95.2 0.14 3.1E-06 48.5 9.8 23 38-60 29-51 (202)
448 COG4240 Predicted kinase [Gene 95.2 0.053 1.2E-06 50.3 6.3 88 35-125 47-134 (300)
449 TIGR02322 phosphon_PhnN phosph 95.1 0.016 3.5E-07 53.9 3.1 23 39-61 2-24 (179)
450 TIGR03263 guanyl_kin guanylate 95.1 0.017 3.7E-07 53.8 3.3 23 39-61 2-24 (180)
451 PRK04040 adenylate kinase; Pro 95.1 0.015 3.2E-07 54.3 2.8 24 38-61 2-25 (188)
452 cd03280 ABC_MutS2 MutS2 homolo 95.1 0.24 5.2E-06 47.0 11.1 25 35-59 25-49 (200)
453 CHL00059 atpA ATP synthase CF1 95.1 0.18 3.9E-06 53.5 10.8 95 35-136 138-245 (485)
454 PRK00625 shikimate kinase; Pro 95.1 0.014 3.1E-07 53.6 2.4 22 40-61 2-23 (173)
455 PF03205 MobB: Molybdopterin g 95.1 0.018 4E-07 50.7 3.1 39 39-78 1-39 (140)
456 COG0003 ArsA Predicted ATPase 95.1 0.028 6E-07 56.8 4.7 48 38-87 2-49 (322)
457 PRK07594 type III secretion sy 95.1 0.079 1.7E-06 55.8 8.2 41 35-79 152-192 (433)
458 PF02374 ArsA_ATPase: Anion-tr 95.0 0.019 4.1E-07 58.2 3.5 41 39-81 2-42 (305)
459 cd03284 ABC_MutS1 MutS1 homolo 95.0 0.14 2.9E-06 49.2 9.2 22 38-59 30-51 (216)
460 TIGR01039 atpD ATP synthase, F 95.0 0.087 1.9E-06 55.6 8.3 100 35-136 140-249 (461)
461 cd03287 ABC_MSH3_euk MutS3 hom 95.0 0.16 3.5E-06 48.7 9.6 25 36-60 29-53 (222)
462 PF03308 ArgK: ArgK protein; 95.0 0.012 2.5E-07 56.5 1.7 49 35-83 26-74 (266)
463 cd02024 NRK1 Nicotinamide ribo 95.0 0.014 2.9E-07 54.2 2.1 22 40-61 1-22 (187)
464 TIGR03498 FliI_clade3 flagella 95.0 0.071 1.5E-06 56.0 7.6 27 35-61 137-163 (418)
465 cd00820 PEPCK_HprK Phosphoenol 95.0 0.026 5.6E-07 46.7 3.4 23 37-59 14-36 (107)
466 cd02023 UMPK Uridine monophosp 95.0 0.016 3.5E-07 55.0 2.6 22 40-61 1-22 (198)
467 PF00154 RecA: recA bacterial 95.0 0.071 1.5E-06 53.7 7.2 91 37-136 52-143 (322)
468 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.098 2.1E-06 47.4 7.7 119 36-167 23-145 (157)
469 TIGR00382 clpX endopeptidase C 94.9 0.11 2.4E-06 54.5 8.9 41 21-61 76-139 (413)
470 TIGR01040 V-ATPase_V1_B V-type 94.9 0.076 1.7E-06 55.8 7.6 102 35-136 138-259 (466)
471 TIGR00150 HI0065_YjeE ATPase, 94.9 0.022 4.7E-07 49.3 3.0 28 35-62 19-46 (133)
472 KOG1947 Leucine rich repeat pr 94.9 0.0015 3.3E-08 71.7 -5.2 175 420-610 180-373 (482)
473 PF06309 Torsin: Torsin; Inte 94.9 0.064 1.4E-06 45.5 5.7 27 35-61 50-76 (127)
474 PRK00300 gmk guanylate kinase; 94.9 0.021 4.5E-07 54.5 3.3 25 37-61 4-28 (205)
475 PRK05818 DNA polymerase III su 94.9 0.89 1.9E-05 44.3 14.2 135 36-182 5-147 (261)
476 COG1875 NYN ribonuclease and A 94.9 0.07 1.5E-06 53.4 6.8 120 35-162 242-388 (436)
477 PRK13765 ATP-dependent proteas 94.9 0.017 3.7E-07 64.0 3.0 75 20-96 29-106 (637)
478 COG0055 AtpD F0F1-type ATP syn 94.9 0.15 3.2E-06 51.1 9.0 100 35-136 144-253 (468)
479 PRK14738 gmk guanylate kinase; 94.9 0.025 5.3E-07 53.9 3.7 26 36-61 11-36 (206)
480 TIGR03324 alt_F1F0_F1_al alter 94.9 0.17 3.8E-06 53.9 10.2 97 35-136 159-266 (497)
481 PRK12678 transcription termina 94.9 0.082 1.8E-06 56.7 7.7 27 35-61 413-439 (672)
482 COG1703 ArgK Putative periplas 94.9 0.021 4.5E-07 55.6 3.1 53 35-87 48-100 (323)
483 PTZ00088 adenylate kinase 1; P 94.8 0.037 8.1E-07 53.3 4.8 22 40-61 8-29 (229)
484 PRK12339 2-phosphoglycerate ki 94.8 0.022 4.7E-07 53.6 3.0 24 38-61 3-26 (197)
485 PF13245 AAA_19: Part of AAA d 94.8 0.028 6E-07 43.5 3.1 25 37-61 9-33 (76)
486 cd01672 TMPK Thymidine monopho 94.8 0.042 9.2E-07 52.1 5.1 23 40-62 2-24 (200)
487 PRK10078 ribose 1,5-bisphospho 94.8 0.024 5.1E-07 53.2 3.2 23 39-61 3-25 (186)
488 PRK09302 circadian clock prote 94.8 0.058 1.3E-06 59.4 6.7 96 36-135 29-141 (509)
489 KOG0473 Leucine-rich repeat pr 94.8 0.0014 3E-08 60.7 -4.9 87 421-507 35-121 (326)
490 PRK06217 hypothetical protein; 94.8 0.018 3.8E-07 53.8 2.3 23 40-62 3-25 (183)
491 PRK08533 flagellar accessory p 94.8 0.061 1.3E-06 52.2 6.1 50 36-89 22-71 (230)
492 TIGR01313 therm_gnt_kin carboh 94.7 0.016 3.6E-07 52.9 2.0 21 41-61 1-21 (163)
493 PRK13768 GTPase; Provisional 94.7 0.03 6.5E-07 55.2 3.9 39 38-78 2-40 (253)
494 PRK09099 type III secretion sy 94.7 0.12 2.6E-06 54.6 8.5 27 35-61 160-186 (441)
495 PRK06793 fliI flagellum-specif 94.7 0.32 7E-06 51.3 11.6 128 36-167 154-291 (432)
496 PRK10463 hydrogenase nickel in 94.7 0.11 2.3E-06 51.5 7.7 27 35-61 101-127 (290)
497 cd02034 CooC The accessory pro 94.7 0.12 2.5E-06 44.0 6.9 36 41-78 2-37 (116)
498 PRK00409 recombination and DNA 94.7 0.43 9.3E-06 55.0 13.6 114 35-170 324-458 (782)
499 PLN03186 DNA repair protein RA 94.7 0.11 2.4E-06 53.3 7.9 55 38-93 123-181 (342)
500 TIGR02974 phageshock_pspF psp 94.7 0.12 2.7E-06 53.0 8.4 53 25-79 2-61 (329)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-65 Score=568.55 Aligned_cols=470 Identities=29% Similarity=0.508 Sum_probs=406.1
Q ss_pred eecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcc-cccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcC
Q 005181 25 SGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEG-LKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVAN 98 (710)
Q Consensus 25 vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~-~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 98 (710)
||.|+.++.+ ..+.++++|+||||+||||||++++++.. .+++|+.++||.+++.++...++.+|+..++....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 9999999888 55559999999999999999999999987 99999999999999999999999999999887432
Q ss_pred CCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCchhhhhhccCCCCcceEE
Q 005181 99 QPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHMNVAKYCKSSSSVHVHE 178 (710)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~ 178 (710)
.+.+...++++..+.+.|+++|++|||||||+..+|+.++.++|....||+|++|||+..++...... ...++
T Consensus 241 -----~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~--~~~~~ 313 (889)
T KOG4658|consen 241 -----EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV--DYPIE 313 (889)
T ss_pred -----ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccC--Ccccc
Confidence 22223336889999999999999999999999999999999999999999999999999999884332 26899
Q ss_pred ccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhhcCCCCCHHHHHHHHHhhccccC-CC
Q 005181 179 LETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLLSTKNMVVSEWKKLFDRMGSILG-SD 257 (710)
Q Consensus 179 l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 257 (710)
++.|+.+|||.||.+.++..... ..+.+++.|+++++.|+|+|||+.++|+.|+.+ .++.+|+++++.+.+... ..
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~--~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K-~t~~eW~~~~~~l~s~~~~~~ 390 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLG--SHPDIEELAKEVAEKCGGLPLALNVLGGLLACK-KTVQEWRRALNVLKSSLAADF 390 (889)
T ss_pred ccccCccccHHHHHHhhcccccc--ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCC-CcHHHHHHHHccccccccCCC
Confidence 99999999999999999866322 223388999999999999999999999999999 578899999999988743 33
Q ss_pred -cchhhHHHHHHhcccCCchhHHHHHhhhcCCCCCcccchhHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHHHhhCCcee
Q 005181 258 -PHLKDCNRVLSEGYHDLPHHLKSCLLYFGLFPESCKVNCARLIRLWIAEGFVPYCK-RPTSEQVAEECLNELIDRSLVQ 335 (710)
Q Consensus 258 -~~~~~~~~~l~~s~~~L~~~~~~~~l~la~f~~~~~~~~~~l~~~w~~~g~~~~~~-~~~~~~~~~~~l~~L~~~sll~ 335 (710)
...+.++.+++.|||.|+++.|.||+|||.||+++.++...++.+|+|+||+.+.+ ...+++.+.+++.+||+++++.
T Consensus 391 ~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~ 470 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI 470 (889)
T ss_pred CchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence 23479999999999999999999999999999999999999999999999998844 6678899999999999999998
Q ss_pred eeecCCCCCEeEEEEcHhHHHHHHHhhc-----CcceEEEeC-----CCccccCCceeEEEEEccCcccccccCCCCcee
Q 005181 336 VSERDISGRARICQVHDLMHEIVVRKTE-----GLSFGRVLN-----GVDLSRCSKTRRIAIQRSIDDGALESIKDSKVR 405 (710)
Q Consensus 336 ~~~~~~~~~~~~~~~h~li~~~~~~~~~-----~~~~~~~~~-----~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~l~ 405 (710)
..... ++...|.|||++|++|...+. .+++....+ ......+...|++++.++.+........+++++
T Consensus 471 ~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~ 548 (889)
T KOG4658|consen 471 EERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLR 548 (889)
T ss_pred hcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccc
Confidence 87644 556789999999999999988 565444332 112234456899999999998888888999999
Q ss_pred EEEeecCCCCCcchhhhhhcccccccEEecCCCC-CccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCC
Q 005181 406 SVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAP-VDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNT 484 (710)
Q Consensus 406 ~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n 484 (710)
+|.+..+..-.......+|..++.|++|||++|. +..+|..++++-+|++|+++++.++.+|.+++++.+|.+|++..+
T Consensus 549 tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 549 TLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred eEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccc
Confidence 9999988642245666779999999999999876 679999999999999999999999999999999999999999977
Q ss_pred c-cccccccccccccCcEEEccc
Q 005181 485 L-VSELPVEIRNLKKLRYLMVYR 506 (710)
Q Consensus 485 ~-~~~~~~~~~~l~~L~~L~l~~ 506 (710)
. ...+|.....|++|++|.+..
T Consensus 629 ~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 629 GRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccccchhhhcccccEEEeec
Confidence 4 455555666699999999975
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1e-57 Score=539.55 Aligned_cols=622 Identities=21% Similarity=0.277 Sum_probs=456.4
Q ss_pred CCceeecccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeC---CCC----------
Q 005181 21 HAGFSGKEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVG---KEY---------- 80 (710)
Q Consensus 21 ~~~~vGre~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~---~~~---------- 80 (710)
.+++|||++.++++ .++.++|+|+||||+||||||+++|+. ...+|++.+|+... ...
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhcccccccc
Confidence 56799999998887 556899999999999999999999998 77889988887421 100
Q ss_pred -C-HHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEE
Q 005181 81 -K-KNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVT 158 (710)
Q Consensus 81 -~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvT 158 (710)
. ...+..+++.++....+. ... . ...+++.++++|+||||||||+.++|+.+.....+.++|++||||
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~----~~~-----~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDI----KIY-----H-LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCc----ccC-----C-HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEE
Confidence 0 112333444443322111 000 1 245778899999999999999999999888777777899999999
Q ss_pred cCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhhcCCCC
Q 005181 159 TRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLLSTKNM 238 (710)
Q Consensus 159 tR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~ 238 (710)
||++.++..+... .+++++.++++||++||.++||... ..+....+.+++|+++|+|+|||++++|++|+++
T Consensus 331 Trd~~vl~~~~~~---~~~~v~~l~~~ea~~LF~~~Af~~~---~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-- 402 (1153)
T PLN03210 331 TKDKHFLRAHGID---HIYEVCLPSNELALEMFCRSAFKKN---SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-- 402 (1153)
T ss_pred eCcHHHHHhcCCC---eEEEecCCCHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC--
Confidence 9999988765433 7899999999999999999998653 2245678899999999999999999999999876
Q ss_pred CHHHHHHHHHhhccccCCCcchhhHHHHHHhcccCCch-hHHHHHhhhcCCCCCcccchhHHHHHHHHCCCCCCCCCCCH
Q 005181 239 VVSEWKKLFDRMGSILGSDPHLKDCNRVLSEGYHDLPH-HLKSCLLYFGLFPESCKVNCARLIRLWIAEGFVPYCKRPTS 317 (710)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~l~la~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~ 317 (710)
+..+|+..++++..... ..+..+++.||+.|++ .+|.||+++|+|+.+..++. +..|.+.+...
T Consensus 403 ~~~~W~~~l~~L~~~~~-----~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~------- 467 (1153)
T PLN03210 403 DKEDWMDMLPRLRNGLD-----GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLANSDLD------- 467 (1153)
T ss_pred CHHHHHHHHHHHHhCcc-----HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH---HHHHHHhcCCC-------
Confidence 47899999999876543 6799999999999986 59999999999998865543 55566654432
Q ss_pred HHHHHHHHHHHhhCCceeeeecCCCCCEeEEEEcHhHHHHHHHhhcCcce-----EEEeCCC-------ccccCCceeEE
Q 005181 318 EQVAEECLNELIDRSLVQVSERDISGRARICQVHDLMHEIVVRKTEGLSF-----GRVLNGV-------DLSRCSKTRRI 385 (710)
Q Consensus 318 ~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~h~li~~~~~~~~~~~~~-----~~~~~~~-------~~~~~~~~r~l 385 (710)
+...++.|++++|++... ..+.||+++|+++++.++.+.. ...+... ......+++.+
T Consensus 468 ---~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i 537 (1153)
T PLN03210 468 ---VNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGI 537 (1153)
T ss_pred ---chhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEE
Confidence 233589999999997642 2489999999999988765431 0111110 01123456666
Q ss_pred EEEccCcccc----cccCCCCceeEEEeecCCCCC----cchhhhhhccc-ccccEEecCCCCCccCcccccCcccceEE
Q 005181 386 AIQRSIDDGA----LESIKDSKVRSVFLFNVDKLP----DSFMNASIANF-KLMKVLDLEDAPVDYLPEGVGNLFNLHYL 456 (710)
Q Consensus 386 ~l~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~----~~~~~~~~~~~-~~L~~L~l~~n~~~~l~~~~~~l~~L~~L 456 (710)
.+........ ..+..+++|+.|.+....... ...++..|..+ .+|+.|.+.++.+..+|..+ .+.+|+.|
T Consensus 538 ~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L 616 (1153)
T PLN03210 538 TLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKL 616 (1153)
T ss_pred EeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEE
Confidence 6654444321 125678889988886553110 11123344444 46999999999999999887 67899999
Q ss_pred EeccccccccCcchhcccCCCEEEcCCC-ccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEE
Q 005181 457 SVKNTEVKIIPKSIRNLLSLEILDLKNT-LVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLY 535 (710)
Q Consensus 457 ~l~~n~i~~lp~~~~~l~~L~~L~l~~n-~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~ 535 (710)
++++|.+..+|..+..+++|+.|+|+++ .++.+| .+..+++|++|++++|..+... +. . ....++|+.|+
T Consensus 617 ~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~l-p~------s-i~~L~~L~~L~ 687 (1153)
T PLN03210 617 QMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVEL-PS------S-IQYLNKLEDLD 687 (1153)
T ss_pred ECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcccc-ch------h-hhccCCCCEEe
Confidence 9999999999999999999999999965 577787 4888999999999976655322 22 2 23345899999
Q ss_pred Eeec--CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEE--------------------
Q 005181 536 LMGN--MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHF-------------------- 593 (710)
Q Consensus 536 L~~n--~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-------------------- 593 (710)
+++| ++.+|..+ ++++|+.|++++|......|.. ..+|+.|++++|.+...+..
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence 9987 78888765 7899999999998754444432 45777788877765443211
Q ss_pred ---------ecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHH--H
Q 005181 594 ---------EAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQV--Y 662 (710)
Q Consensus 594 ---------~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~--~ 662 (710)
.+..+++|+.|+|++|.....+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|.... +
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 11224688899999998888889889999999999999998788888766 78999999999885321 1
Q ss_pred H-----hcccCCcCccccCcCeEEEEEEeCCeeeEeeh-hhhccCcHH
Q 005181 663 Y-----MTKDENWGKVTEHIPDVLVTFLAAGRVFQYRK-DILSSLSPE 704 (710)
Q Consensus 663 ~-----~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~-N~l~~~~~~ 704 (710)
. ...++++| .+..+|.++... +.|+.|++++ |+++.+|..
T Consensus 843 ~~~~nL~~L~Ls~n-~i~~iP~si~~l-~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 843 DISTNISDLNLSRT-GIEEVPWWIEKF-SNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred ccccccCEeECCCC-CCccChHHHhcC-CCCCEEECCCCCCcCccCcc
Confidence 0 11225553 345677766554 7788888865 777776653
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.1e-39 Score=331.95 Aligned_cols=276 Identities=33% Similarity=0.585 Sum_probs=218.6
Q ss_pred cccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCC
Q 005181 27 KEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQ 99 (710)
Q Consensus 27 re~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 99 (710)
||.++++| ..+.++|+|+|+||+||||||.+++++...+.+|++++|+.++...+...++..++..+......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 56777776 36899999999999999999999999877899999999999999988889999999988766321
Q ss_pred CCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCchhhhhhccCCCCcceEEc
Q 005181 100 PAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHMNVAKYCKSSSSVHVHEL 179 (710)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~l 179 (710)
. ....+..+....+.+.++++++|+||||||+...|+.+...++....|++||||||+..++...... ...+++
T Consensus 81 ~----~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~--~~~~~l 154 (287)
T PF00931_consen 81 I----SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT--DKVIEL 154 (287)
T ss_dssp S----SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC--EEEEEC
T ss_pred c----ccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc--cccccc
Confidence 1 1334556789999999999999999999999999988888888777899999999999887766542 378999
Q ss_pred cCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhhcCCCCCHHHHHHHHHhhccccCCC-c
Q 005181 180 ETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLLSTKNMVVSEWKKLFDRMGSILGSD-P 258 (710)
Q Consensus 180 ~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 258 (710)
++|+.+||++||.+.++... ........+.+++|++.|+|+|+|+.++|++++.+. +..+|+..++++....... +
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~-~~~~w~~~~~~l~~~~~~~~~ 231 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE--SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKS-TVDEWEEALEELENSLRESRD 231 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHH-SSSSHHHHHHHHHHCHTCSSG
T ss_pred cccccccccccccccccccc--cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence 99999999999999986542 112334567899999999999999999999997764 6788999998876665322 2
Q ss_pred chhhHHHHHHhcccCCchhHHHHHhhhcCCCCCcccchhHHHHHHHHCCCCCC
Q 005181 259 HLKDCNRVLSEGYHDLPHHLKSCLLYFGLFPESCKVNCARLIRLWIAEGFVPY 311 (710)
Q Consensus 259 ~~~~~~~~l~~s~~~L~~~~~~~~l~la~f~~~~~~~~~~l~~~w~~~g~~~~ 311 (710)
....+..++..||+.|+++.|+||++|++||++..++.+.++++|+++|++..
T Consensus 232 ~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 34889999999999999999999999999999999999999999999999864
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=4.6e-29 Score=251.17 Aligned_cols=315 Identities=17% Similarity=0.197 Sum_probs=243.7
Q ss_pred ccCCceeEEEEEccCcccccccCCC-CceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCc-ccccCcccce
Q 005181 377 SRCSKTRRIAIQRSIDDGALESIKD-SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLH 454 (710)
Q Consensus 377 ~~~~~~r~l~l~~~~~~~~~~~~~~-~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~-~~~~~l~~L~ 454 (710)
...++++.+.+..+....+|.+... .++..|.+.++.. ..+....++-++.|++|||+.|.|+++| .+|..-.+++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I--~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI--SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeecccc--ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 4567788888888888777664444 4588888887765 4455567777888888888888888775 3455667888
Q ss_pred EEEeccccccccCcc-hhcccCCCEEEcCCCcccccccc-ccccccCcEEEccccccccCcc------CCch--------
Q 005181 455 YLSVKNTEVKIIPKS-IRNLLSLEILDLKNTLVSELPVE-IRNLKKLRYLMVYRYNYTTGSI------MPAE-------- 518 (710)
Q Consensus 455 ~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~n~~~~~~------~~~~-------- 518 (710)
+|+|++|.|+.+-.. |.++.+|.+|.|++|.++.+|.. |.++++|+.|+|.+ |.+.... .++.
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhc
Confidence 888888888855444 78888888888888888888764 55688888888875 3332211 1110
Q ss_pred ---hhhhccCCCCcCccEEEEeec-CCCC-CccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEE
Q 005181 519 ---AVAKSLSSPPQYLQRLYLMGN-MKKL-PDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHF 593 (710)
Q Consensus 519 ---~~~~~l~~~~~~L~~L~L~~n-~~~i-p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 593 (710)
..-+..+-.+.++++|+|..| +..+ ..|+.+++.|+.|+|++|.+....+..+..+++|+.|+|++|.+.+..+.
T Consensus 256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence 012233444568888888888 5555 45778899999999999999888888888899999999999999888888
Q ss_pred ecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCcc---ccccCCCCcEEEEecCcHHHHHhcccCCc
Q 005181 594 EAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPI---GIEHLRNLKLLRFDCMVKQVYYMTKDENW 670 (710)
Q Consensus 594 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 670 (710)
.+..+..|++|+|++|.+.......|..+++|+.|||.+|.+...+.+ .|.++++|+.|.+.|
T Consensus 336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-------------- 401 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-------------- 401 (873)
T ss_pred HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC--------------
Confidence 888899999999999987666666788889999999999988765543 478899999999964
Q ss_pred CccccCcCeEEEEEEeCCeeeEeehhhhccCcHHHHhhc
Q 005181 671 GKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPEYVEQI 709 (710)
Q Consensus 671 n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~~~~~~ 709 (710)
|.+..||...|..++.|+.|||.+|.|.+|.+++|+++
T Consensus 402 -Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 402 -NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred -ceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 66779999999999999999999999999999999876
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=2.3e-27 Score=281.89 Aligned_cols=318 Identities=23% Similarity=0.244 Sum_probs=192.3
Q ss_pred cCCceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCc-cCcccccCcccceEE
Q 005181 378 RCSKTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD-YLPEGVGNLFNLHYL 456 (710)
Q Consensus 378 ~~~~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~l~~~~~~l~~L~~L 456 (710)
...++|++.+..+......+....++|+.|.+.++.. ....+..++++++|++|++++|.+. .+|..+.++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~--~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML--SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcc--cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 3455666666666554433444556666666666554 2334555666777777777777655 456666677777777
Q ss_pred Eecccccc-ccCcchhcccCCCEEEcCCCccc-cccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEE
Q 005181 457 SVKNTEVK-IIPKSIRNLLSLEILDLKNTLVS-ELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRL 534 (710)
Q Consensus 457 ~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~-~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L 534 (710)
++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++ |.+++..+. .+ ...++|+.|
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~------~l-~~l~~L~~L 265 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY-NNLTGPIPS------SL-GNLKNLQYL 265 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC-ceeccccCh------hH-hCCCCCCEE
Confidence 77777666 56666667777777777766543 5666666777777777763 444443332 11 222356666
Q ss_pred EEeec--CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCc
Q 005181 535 YLMGN--MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAV 612 (710)
Q Consensus 535 ~L~~n--~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 612 (710)
+|++| .+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred ECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 66666 2445666666666666666666666555666666666666666666665555555566666666666666665
Q ss_pred eeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHH------HHH--h--cccCCcCccccCcCeEEE
Q 005181 613 KSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQ------VYY--M--TKDENWGKVTEHIPDVLV 682 (710)
Q Consensus 613 ~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~------~~~--~--~~~~~~n~~~~~ip~~~~ 682 (710)
+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|... +.. . ..++++|++.+.+|..+.
T Consensus 346 ~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence 556656666666666666666665556666666666666666655321 000 0 111456677777776654
Q ss_pred EEEeCCeeeEeehhhhccCcHHHH
Q 005181 683 TFLAAGRVFQYRKDILSSLSPEYV 706 (710)
Q Consensus 683 ~~~~~l~~l~l~~N~l~~~~~~~~ 706 (710)
.. +.|+.+++++|.++...+..+
T Consensus 426 ~l-~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 426 KL-PLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred cC-CCCCEEECcCCcccCccChhh
Confidence 44 788888888888886655543
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.4e-26 Score=275.26 Aligned_cols=316 Identities=20% Similarity=0.194 Sum_probs=234.8
Q ss_pred CCceeEEEEEccCcccc-c-ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCc-cCcccccCcccceE
Q 005181 379 CSKTRRIAIQRSIDDGA-L-ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD-YLPEGVGNLFNLHY 455 (710)
Q Consensus 379 ~~~~r~l~l~~~~~~~~-~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~l~~~~~~l~~L~~ 455 (710)
..+++.+.+..+..... + ....+++|+.|.+.++.. ....|..+.++++|++|++++|.+. .+|..++++++|+.
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l--~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL--VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc--cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 45688888888776532 2 255678888888887764 2345667888888888888888876 56888888888888
Q ss_pred EEecccccc-ccCcchhcccCCCEEEcCCCcc-ccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccE
Q 005181 456 LSVKNTEVK-IIPKSIRNLLSLEILDLKNTLV-SELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQR 533 (710)
Q Consensus 456 L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~-~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~ 533 (710)
|++++|.++ .+|..+.++++|++|++++|.+ +.+|..+.++++|++|+++ +|.+++..+. .+. ..++|+.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-~n~l~~~~p~------~l~-~l~~L~~ 288 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY-QNKLSGPIPP------SIF-SLQKLIS 288 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc-CCeeeccCch------hHh-hccCcCE
Confidence 888888887 7787888888888888887765 4677788888888888888 4555555443 222 2347888
Q ss_pred EEEeec--CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCC
Q 005181 534 LYLMGN--MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVA 611 (710)
Q Consensus 534 L~L~~n--~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~ 611 (710)
|+|++| .+.+|..+.++++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+
T Consensus 289 L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred EECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 888877 356777777888888888888888777777778888888888888877766677777778888888888877
Q ss_pred ceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHH------HHH----hcccCCcCccccCcCeEE
Q 005181 612 VKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQ------VYY----MTKDENWGKVTEHIPDVL 681 (710)
Q Consensus 612 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~------~~~----~~~~~~~n~~~~~ip~~~ 681 (710)
.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|... +.. ...++++|++.+.+|..+
T Consensus 369 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence 7777777777777888888888777777777777778888877777421 111 112366788888888776
Q ss_pred EEEEeCCeeeEeehhhhccCcHHH
Q 005181 682 VTFLAAGRVFQYRKDILSSLSPEY 705 (710)
Q Consensus 682 ~~~~~~l~~l~l~~N~l~~~~~~~ 705 (710)
... +.|+.|++++|.+....++.
T Consensus 449 ~~l-~~L~~L~L~~n~~~~~~p~~ 471 (968)
T PLN00113 449 WDM-PSLQMLSLARNKFFGGLPDS 471 (968)
T ss_pred ccC-CCCcEEECcCceeeeecCcc
Confidence 655 99999999999998554444
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=6.5e-27 Score=235.79 Aligned_cols=295 Identities=17% Similarity=0.095 Sum_probs=234.1
Q ss_pred CCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcc-hhcccCCC
Q 005181 399 IKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKS-IRNLLSLE 477 (710)
Q Consensus 399 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~ 477 (710)
.-.+..++|.+.++.. ..+-...|.++++|+.+++..|.++.+|....-..||+.|+|.+|.|+++... ++-++.|+
T Consensus 75 ~lp~~t~~LdlsnNkl--~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNKL--SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred cCccceeeeecccccc--ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 3456788888888876 45566789999999999999999999998777778899999999999966544 88999999
Q ss_pred EEEcCCCccccccc-cccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCc-cccCCCCcc
Q 005181 478 ILDLKNTLVSELPV-EIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPD-WIFKLENLI 554 (710)
Q Consensus 478 ~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~-~~~~l~~L~ 554 (710)
.||||.|.|..+|. .|..-.++++|+|+ +|.++..... .+.+ ..+|..|.|+.| +.++|. .|..+++|+
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La-~N~It~l~~~------~F~~-lnsL~tlkLsrNrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLA-SNRITTLETG------HFDS-LNSLLTLKLSRNRITTLPQRSFKRLPKLE 224 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeec-cccccccccc------cccc-cchheeeecccCcccccCHHHhhhcchhh
Confidence 99999999999986 46666899999999 5777665543 2323 338899999999 888887 567799999
Q ss_pred EEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCC
Q 005181 555 RLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCP 634 (710)
Q Consensus 555 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 634 (710)
.|+|..|.+.......|..+++|+.|.|..|.+...-...|.++.+++.|+|+.|++...-..|+.+++.|++|++|+|.
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 99999999877666788899999999999998888777788889999999999998877777888899999999999999
Q ss_pred CCCCCccccccCCCCcEEEEecCcHH------H--HHhccc--CCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcHH
Q 005181 635 LLMEIPIGIEHLRNLKLLRFDCMVKQ------V--YYMTKD--ENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPE 704 (710)
Q Consensus 635 ~~~~~p~~~~~l~~L~~L~l~~~~~~------~--~~~~~~--~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~ 704 (710)
+....++.+..+++|+.|+|++|... | ...+.. ++. |.+.++.+..|..+.+|+.|||+.|.|+...++
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 88778888889999999999876321 0 111111 445 455567777777777777777777777754444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=4e-28 Score=245.91 Aligned_cols=270 Identities=23% Similarity=0.252 Sum_probs=211.2
Q ss_pred cccCCceeEEEEEccCcccc-cccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccce
Q 005181 376 LSRCSKTRRIAIQRSIDDGA-LESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLH 454 (710)
Q Consensus 376 ~~~~~~~r~l~l~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~ 454 (710)
+..++++.|+++..+..... -+....|.||++.+..++.-... .|..+-.+..|.+|||++|++.++|..+.+.+++-
T Consensus 51 L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG-iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG-IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC-CCchhcccccceeeecchhhhhhcchhhhhhcCcE
Confidence 34567888998888877543 35677899999999888764444 44556689999999999999999999999999999
Q ss_pred EEEeccccccccCcc-hhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccE
Q 005181 455 YLSVKNTEVKIIPKS-IRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQR 533 (710)
Q Consensus 455 ~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~ 533 (710)
+|+||+|+|..||.. |-+++.|-.||||+|.+..+|+.+..+.+|++|.|++ |-+.... +..+. ...+|+.
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~-NPL~hfQ------LrQLP-smtsL~v 201 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN-NPLNHFQ------LRQLP-SMTSLSV 201 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC-ChhhHHH------HhcCc-cchhhhh
Confidence 999999999999988 7799999999999999999999999999999999995 4332211 11222 2247778
Q ss_pred EEEeec---CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCC
Q 005181 534 LYLMGN---MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFV 610 (710)
Q Consensus 534 L~L~~n---~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 610 (710)
|.+++. +..+|.++..+.+|..++++.|.+.. .|+.+.++++|+.|+||+|.+++. ....+...+|++|+||.|.
T Consensus 202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccch
Confidence 888776 56678888888888888888888765 577788888888888888887664 3344556778888888886
Q ss_pred CceeeeecCCcCCCccEEEEccCCCCC-CCccccccCCCCcEEEEecC
Q 005181 611 AVKSVIIEKGAMPDIRELEIGPCPLLM-EIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 611 ~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~~ 657 (710)
+..+|..+..+++|+.|.+.+|++.- .+|+.++.+.+|+.+..++|
T Consensus 280 -Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 280 -LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred -hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence 44577777788888888888877653 47778888888888777643
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=3.4e-25 Score=224.88 Aligned_cols=313 Identities=19% Similarity=0.157 Sum_probs=182.3
Q ss_pred CceeEEEEEccCcccc---cccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEE
Q 005181 380 SKTRRIAIQRSIDDGA---LESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYL 456 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~~---~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L 456 (710)
+-+|-+.+..++++.. .....+++++-|.+..... ...|..++.|.+|+.|.+++|++..+-..++.++.|+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L---~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL---EQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh---hhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 3455566666666531 1233455666665554332 445666777777777777777777666667777777777
Q ss_pred Eecccccc--ccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEE
Q 005181 457 SVKNTEVK--IIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRL 534 (710)
Q Consensus 457 ~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L 534 (710)
.++.|+++ .+|..+..+..|..||||+|++.++|..+...+++-.|+|++ |.+..+ |. .++-....|-.|
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetI-Pn------~lfinLtDLLfL 155 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETI-PN------SLFINLTDLLFL 155 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccC-Cc------hHHHhhHhHhhh
Confidence 77777766 677777777777777777777777777777777777777773 433322 22 233333355666
Q ss_pred EEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeeccc-CCceeEEecCCCCcccEEEeccCCCc
Q 005181 535 YLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTY-DYELFHFEAGWFPKLQKLLLWDFVAV 612 (710)
Q Consensus 535 ~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~L~~n~~~ 612 (710)
+|++| +..+|.-+..+.+|++|.|++|++.......+..+.+|+.|.+++.+ -...+|..+..+.+|..+++|.|+ +
T Consensus 156 DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-L 234 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-L 234 (1255)
T ss_pred ccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-C
Confidence 77777 66677666667777777777776654444444455555566665442 222345555556666666666654 3
Q ss_pred eeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHH-HHh---ccc-----CCcCcc-ccCcCeEEE
Q 005181 613 KSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQV-YYM---TKD-----ENWGKV-TEHIPDVLV 682 (710)
Q Consensus 613 ~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~---~~~-----~~~n~~-~~~ip~~~~ 682 (710)
..+|..+..+++|+.|+||+|.+. .+......-.+|+.|++|.|.... +.. +.. .+.|.+ -..||..+.
T Consensus 235 p~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred CcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 345555556666666666666543 233233333444445554432110 000 000 112222 135787777
Q ss_pred EEEeCCeeeEeehhhhccCcHHHH
Q 005181 683 TFLAAGRVFQYRKDILSSLSPEYV 706 (710)
Q Consensus 683 ~~~~~l~~l~l~~N~l~~~~~~~~ 706 (710)
.. ..|+++..++|.+.-+|++.+
T Consensus 314 KL-~~Levf~aanN~LElVPEglc 336 (1255)
T KOG0444|consen 314 KL-IQLEVFHAANNKLELVPEGLC 336 (1255)
T ss_pred hh-hhhHHHHhhccccccCchhhh
Confidence 66 788888888888888887764
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=1.9e-23 Score=201.97 Aligned_cols=264 Identities=23% Similarity=0.213 Sum_probs=165.6
Q ss_pred ccCCceeEEEEEccCcccc-cccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceE
Q 005181 377 SRCSKTRRIAIQRSIDDGA-LESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHY 455 (710)
Q Consensus 377 ~~~~~~r~l~l~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~ 455 (710)
+....+..+.+..++.... ++......+..+.+.++.. ...|.+++.+..++.|+.++|.+..+|..++.+.+|+.
T Consensus 42 W~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l---~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL---SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVK 118 (565)
T ss_pred hhhcchhhhhhccCchhhccHhhhcccceeEEEeccchh---hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhh
Confidence 3344455556666665443 2445556666666666554 44567777788888888888888888888888888888
Q ss_pred EEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEE
Q 005181 456 LSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLY 535 (710)
Q Consensus 456 L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~ 535 (710)
|+.++|.++.+|++++.+..|+.|+..+|.+..+|+++.++.+|..|++.+ |.+....+. ... .+.|++|+
T Consensus 119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~-------~i~-m~~L~~ld 189 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPEN-------HIA-MKRLKHLD 189 (565)
T ss_pred hhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHH-------HHH-HHHHHhcc
Confidence 888888888888888888888888888888888888777777777777774 333322221 111 34566777
Q ss_pred Eeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCcee
Q 005181 536 LMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKS 614 (710)
Q Consensus 536 L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 614 (710)
...| ++++|+.++.+.+|.-|+|..|.+... | .|..|..|++|++..|.+..........+++|..|||..|+ ++.
T Consensus 190 ~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke 266 (565)
T KOG0472|consen 190 CNSNLLETLPPELGGLESLELLYLRRNKIRFL-P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKE 266 (565)
T ss_pred cchhhhhcCChhhcchhhhHHHHhhhcccccC-C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-ccc
Confidence 6666 666777777777777777777766543 2 55566666666665555544333333355555555555554 334
Q ss_pred eeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecC
Q 005181 615 VIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 615 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 657 (710)
.|..+.-+.+|.+||+++|.++ .+|..++++ +|+.|-+.||
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCC
Confidence 5555555555555555555544 445555555 5555555555
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=5e-23 Score=199.18 Aligned_cols=300 Identities=19% Similarity=0.204 Sum_probs=197.5
Q ss_pred CCceeEEEEEccCcccccc-cCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCccccc-CcccceEE
Q 005181 379 CSKTRRIAIQRSIDDGALE-SIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVG-NLFNLHYL 456 (710)
Q Consensus 379 ~~~~r~l~l~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~-~l~~L~~L 456 (710)
+.+++++..+.+....+|+ ...+.++.-|.+..+.. .+.| .|..|+.|++|.++.|.++.+|.... .+++|.+|
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki---~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI---RFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc---ccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceee
Confidence 4567777777777766544 34455555555555443 4555 78999999999999999998887765 88999999
Q ss_pred EeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccc----------------------c--C
Q 005181 457 SVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYT----------------------T--G 512 (710)
Q Consensus 457 ~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~----------------------~--~ 512 (710)
||+.|+++++|+.+..+.+|++||+|+|.++.+|..++++ .|+.|-+-||..- + |
T Consensus 258 DLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 258 DLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred eccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999999999 8999988875510 0 0
Q ss_pred ccCCchhh---h--h-ccC---CCCcCccEEEEeec-CCCCCccccCCCC---ccEEEEEeeccCC--------------
Q 005181 513 SIMPAEAV---A--K-SLS---SPPQYLQRLYLMGN-MKKLPDWIFKLEN---LIRLGLELSGLAE-------------- 565 (710)
Q Consensus 513 ~~~~~~~~---~--~-~l~---~~~~~L~~L~L~~n-~~~ip~~~~~l~~---L~~L~L~~n~l~~-------------- 565 (710)
...+.... . . ..+ ....+.+.|++++- .+.+|..+..... ...++++.|++.+
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~ 416 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTD 416 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHH
Confidence 00000000 0 0 000 01123445555544 4555554332222 4555555555433
Q ss_pred ---------ccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCC
Q 005181 566 ---------EPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLL 636 (710)
Q Consensus 566 ---------~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 636 (710)
.+|..+..+++|..|+|++|.+.. +|..++.+..|+.|++++|+ ...+|..+..+..|+.+-.++|++.
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhcccccc
Confidence 234455566677777776665443 45556666667777777764 3445555555555555555556654
Q ss_pred CCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccC
Q 005181 637 MEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSL 701 (710)
Q Consensus 637 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~ 701 (710)
..-|+.+.++.+|..|++. ||-+..||+.+..+ ..++.|++.||.+...
T Consensus 495 ~vd~~~l~nm~nL~tLDL~---------------nNdlq~IPp~Lgnm-tnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQ---------------NNDLQQIPPILGNM-TNLRHLELDGNPFRQP 543 (565)
T ss_pred ccChHHhhhhhhcceeccC---------------CCchhhCChhhccc-cceeEEEecCCccCCC
Confidence 3444558888888888885 46678899998887 8899999999999833
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=2.3e-19 Score=213.63 Aligned_cols=298 Identities=18% Similarity=0.151 Sum_probs=165.9
Q ss_pred CccccCCceeEEEEEccCccc-------ccc-cCC-CCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCc
Q 005181 374 VDLSRCSKTRRIAIQRSIDDG-------ALE-SIK-DSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP 444 (710)
Q Consensus 374 ~~~~~~~~~r~l~l~~~~~~~-------~~~-~~~-~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~ 444 (710)
..+..+.+++.+.+....... .+. ... .+++|.|.+.++.. ..+|..| ...+|+.|++.+|.+..+|
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l---~~lP~~f-~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL---RCMPSNF-RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC---CCCCCcC-CccCCcEEECcCccccccc
Confidence 345566777777765442110 111 111 23566666655432 2233333 3466666777666666666
Q ss_pred ccccCcccceEEEecccc-ccccCcchhcccCCCEEEcCCC-ccccccccccccccCcEEEccccccccCccCCc----h
Q 005181 445 EGVGNLFNLHYLSVKNTE-VKIIPKSIRNLLSLEILDLKNT-LVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPA----E 518 (710)
Q Consensus 445 ~~~~~l~~L~~L~l~~n~-i~~lp~~~~~l~~L~~L~l~~n-~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~----~ 518 (710)
..+..+++|+.|+|+++. ++.+| .+..+++|++|+|++| .+..+|..+.++++|+.|++++|+.++...... .
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL 706 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL 706 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence 666666666666666543 44554 3556666666666654 456666666666666666666554443221110 0
Q ss_pred --------hhhhccCCCCcCccEEEEeec-CCCCCccc------------------------------cCCCCccEEEEE
Q 005181 519 --------AVAKSLSSPPQYLQRLYLMGN-MKKLPDWI------------------------------FKLENLIRLGLE 559 (710)
Q Consensus 519 --------~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~------------------------------~~l~~L~~L~L~ 559 (710)
..+..+...+.+|+.|+|++| +..+|..+ ...++|+.|+|+
T Consensus 707 ~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 001111122345666666665 45555432 112345555555
Q ss_pred eeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCC
Q 005181 560 LSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEI 639 (710)
Q Consensus 560 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 639 (710)
+|......|..++++++|+.|+|++|...+.+|... .+++|+.|++++|..+..+|.. .++|+.|+|++|.+. .+
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~i 861 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EV 861 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cC
Confidence 555444455566666666666666654444444333 4666666666666555444432 356677777777654 56
Q ss_pred ccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehh
Q 005181 640 PIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKD 696 (710)
Q Consensus 640 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N 696 (710)
|..+..+++|+.|++++| +.+..+|...... +.|+.++++++
T Consensus 862 P~si~~l~~L~~L~L~~C--------------~~L~~l~~~~~~L-~~L~~L~l~~C 903 (1153)
T PLN03210 862 PWWIEKFSNLSFLDMNGC--------------NNLQRVSLNISKL-KHLETVDFSDC 903 (1153)
T ss_pred hHHHhcCCCCCEEECCCC--------------CCcCccCcccccc-cCCCeeecCCC
Confidence 777778888888888765 3355677766554 88888888765
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=2.5e-18 Score=189.62 Aligned_cols=264 Identities=17% Similarity=0.162 Sum_probs=182.3
Q ss_pred eeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEEeccc
Q 005181 382 TRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNT 461 (710)
Q Consensus 382 ~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n 461 (710)
-..+.+..+....+|+.. .++++.|.+.++... .+ |. ..++|++|++++|.++.+|.. .++|+.|++++|
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt--~L-P~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT--SL-PA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCC--CC-CC---CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 445566666665554433 347788887776542 22 21 247888999999988888743 468888899988
Q ss_pred cccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-C
Q 005181 462 EVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-M 540 (710)
Q Consensus 462 ~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~ 540 (710)
.++.+|..+ .+|+.|++++|.++.+|.. +++|+.|+++ +|.+++.. ..+.+|+.|++++| +
T Consensus 273 ~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS-~N~L~~Lp-----------~lp~~L~~L~Ls~N~L 334 (788)
T PRK15387 273 PLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVS-DNQLASLP-----------ALPSELCKLWAYNNQL 334 (788)
T ss_pred chhhhhhch---hhcCEEECcCCcccccccc---ccccceeECC-CCccccCC-----------CCcccccccccccCcc
Confidence 888777633 5688888888888888763 4678899998 45665422 12346888888888 6
Q ss_pred CCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCC
Q 005181 541 KKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKG 620 (710)
Q Consensus 541 ~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 620 (710)
..+|.. ..+|+.|+|++|+++..+ .. .++|+.|++++|.+..+ |. ..++|+.|++++|.+.. +|..
T Consensus 335 ~~LP~l---p~~Lq~LdLS~N~Ls~LP-~l---p~~L~~L~Ls~N~L~~L-P~---l~~~L~~LdLs~N~Lt~-LP~l-- 400 (788)
T PRK15387 335 TSLPTL---PSGLQELSVSDNQLASLP-TL---PSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTS-LPVL-- 400 (788)
T ss_pred cccccc---ccccceEecCCCccCCCC-CC---CcccceehhhccccccC-cc---cccccceEEecCCcccC-CCCc--
Confidence 777742 247888889888887643 22 35778888888887753 32 23578888888887654 4432
Q ss_pred cCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhcc
Q 005181 621 AMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSS 700 (710)
Q Consensus 621 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~ 700 (710)
.++|+.|++++|.+. .+|..+ .+|+.|+++ + |.++.+|..+... +.|..+++++|.|+.
T Consensus 401 -~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls--------------~-NqLt~LP~sl~~L-~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 401 -PSELKELMVSGNRLT-SLPMLP---SGLLSLSVY--------------R-NQLTRLPESLIHL-SSETTVNLEGNPLSE 459 (788)
T ss_pred -ccCCCEEEccCCcCC-CCCcch---hhhhhhhhc--------------c-CcccccChHHhhc-cCCCeEECCCCCCCc
Confidence 357888899988876 467543 456777886 3 3345788887655 888999999999987
Q ss_pred CcHHHHhh
Q 005181 701 LSPEYVEQ 708 (710)
Q Consensus 701 ~~~~~~~~ 708 (710)
..+..+.+
T Consensus 460 ~~~~~L~~ 467 (788)
T PRK15387 460 RTLQALRE 467 (788)
T ss_pred hHHHHHHH
Confidence 66665543
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=1.2e-20 Score=201.19 Aligned_cols=302 Identities=19% Similarity=0.155 Sum_probs=199.2
Q ss_pred ceeEEEEEccCccccc-ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEEec
Q 005181 381 KTRRIAIQRSIDDGAL-ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVK 459 (710)
Q Consensus 381 ~~r~l~l~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~ 459 (710)
+++.+.+.++.....+ ......+|+.|.+..+.. ...|....++.+|++|+|.+|.+..+|.++..+.+|++|+++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i---~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI---RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhH---hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 3677777777665432 345566777777665544 445567777788888888888877778778788888888888
Q ss_pred cccccccCcchhcccCCCEEEcCCC-cccccc-------------------ccccccccCcEEEccccccccCccCCch-
Q 005181 460 NTEVKIIPKSIRNLLSLEILDLKNT-LVSELP-------------------VEIRNLKKLRYLMVYRYNYTTGSIMPAE- 518 (710)
Q Consensus 460 ~n~i~~lp~~~~~l~~L~~L~l~~n-~~~~~~-------------------~~~~~l~~L~~L~l~~~n~~~~~~~~~~- 518 (710)
+|.+..+|.-+..++.++.+..++| .+..++ .++.+++. .|+|..|+.. .......
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dls~~~ 199 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDLSNLA 199 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhhhhcc
Confidence 8888877777777777777777766 222111 11222222 2444432211 1100000
Q ss_pred -----------------------------hhhh--ccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCc
Q 005181 519 -----------------------------AVAK--SLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEE 566 (710)
Q Consensus 519 -----------------------------~~~~--~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~ 566 (710)
..+. .....+.+|+.++++.| +..+|+|+..+.+|+.|+..+|.++.
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~- 278 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA- 278 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHh-
Confidence 0000 11234567888888888 78888888889999999998888865
Q ss_pred cccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeee-------------------------cCCc
Q 005181 567 PIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVII-------------------------EKGA 621 (710)
Q Consensus 567 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-------------------------~~~~ 621 (710)
.|..+....+|+.|.+..|.+... |....++.+|++|+|..|.+...++. .-..
T Consensus 279 lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 344455566666666666655443 33445577777777777664322111 1123
Q ss_pred CCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccC
Q 005181 622 MPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSL 701 (710)
Q Consensus 622 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~ 701 (710)
++.|+.|++.+|.+....-+.+.+..+|+.|+|+ | |.++.+|++.+..++.|+.|+|+||+|+.+
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs--------------y-NrL~~fpas~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS--------------Y-NRLNSFPASKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeec--------------c-cccccCCHHHHhchHHhHHHhcccchhhhh
Confidence 4578888899998877655578889999999998 4 666789999988889999999999999999
Q ss_pred cHHH
Q 005181 702 SPEY 705 (710)
Q Consensus 702 ~~~~ 705 (710)
|...
T Consensus 423 p~tv 426 (1081)
T KOG0618|consen 423 PDTV 426 (1081)
T ss_pred hHHH
Confidence 8554
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=2.6e-20 Score=198.60 Aligned_cols=257 Identities=19% Similarity=0.196 Sum_probs=174.9
Q ss_pred ccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEcccc
Q 005181 428 KLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRY 507 (710)
Q Consensus 428 ~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~ 507 (710)
.+|++++++.|.+..+|.++..+.+|+.++..+|.++.+|..+....+|+.|++.+|.+..+|+....++.|++|+|..|
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 56888888888888888888888888888888888888888888888888888888888888888888888888888854
Q ss_pred ccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccc-cCCCCccEEEEEeeccCCccccccccccccceEEeecc
Q 005181 508 NYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWI-FKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGT 585 (710)
Q Consensus 508 n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 585 (710)
+ +...... .+......|..|+.+.| +...|..- ..++.|+.|++.+|.++....+.|.+.++|+.|+|++|
T Consensus 321 ~-L~~lp~~------~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 321 N-LPSLPDN------FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred c-ccccchH------HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 3 3222211 11111223555555555 44455311 34566777777777777766677777777777777777
Q ss_pred cCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhc
Q 005181 586 YDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMT 665 (710)
Q Consensus 586 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~ 665 (710)
++..++...+.++..|+.|+||+|.+ ..+|..+..++.|+.|...+|.+. .+| .+..++.|+.+|+|.|..
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L------ 464 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNL------ 464 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchh------
Confidence 77766666667777777777777764 445666777777777777777754 566 677777777777775432
Q ss_pred ccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcHHHHhhc
Q 005181 666 KDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPEYVEQI 709 (710)
Q Consensus 666 ~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~~~~~~ 709 (710)
+.+..-...|. +.|+.||++||.-..+....|+.+
T Consensus 465 ---~~~~l~~~~p~------p~LkyLdlSGN~~l~~d~~~l~~l 499 (1081)
T KOG0618|consen 465 ---SEVTLPEALPS------PNLKYLDLSGNTRLVFDHKTLKVL 499 (1081)
T ss_pred ---hhhhhhhhCCC------cccceeeccCCcccccchhhhHHh
Confidence 11111122222 667777777777555555555443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=1.1e-16 Score=176.91 Aligned_cols=239 Identities=18% Similarity=0.148 Sum_probs=175.8
Q ss_pred ceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcC
Q 005181 403 KVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLK 482 (710)
Q Consensus 403 ~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~ 482 (710)
.-..|.+.++.. ..+|..+. ++|+.|++++|.++.+|. .+++|++|++++|.++.+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~L---tsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGL---TTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCC---CcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 344555555543 12333333 478999999999998885 358899999999999988853 4688999999
Q ss_pred CCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEee
Q 005181 483 NTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELS 561 (710)
Q Consensus 483 ~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n 561 (710)
+|.+..+|..+ ++|+.|++++ |.++... ..+++|+.|+|++| +..+|.. ..+|+.|++++|
T Consensus 271 ~N~L~~Lp~lp---~~L~~L~Ls~-N~Lt~LP-----------~~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N 332 (788)
T PRK15387 271 SNPLTHLPALP---SGLCKLWIFG-NQLTSLP-----------VLPPGLQELSVSDNQLASLPAL---PSELCKLWAYNN 332 (788)
T ss_pred CCchhhhhhch---hhcCEEECcC-Ccccccc-----------ccccccceeECCCCccccCCCC---cccccccccccC
Confidence 99888888633 5788899985 5554321 23458999999999 7777753 246888999999
Q ss_pred ccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCcc
Q 005181 562 GLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPI 641 (710)
Q Consensus 562 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 641 (710)
.++.. |. ...+|+.|+|++|.+...++ ..++|+.|++++|.+.. +|.. .++|+.|++++|.+. .+|.
T Consensus 333 ~L~~L-P~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~ 399 (788)
T PRK15387 333 QLTSL-PT---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPV 399 (788)
T ss_pred ccccc-cc---cccccceEecCCCccCCCCC----CCcccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCC
Confidence 99764 32 22589999999999887532 24688999999998664 5543 357999999999976 5675
Q ss_pred ccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcHHH
Q 005181 642 GIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPEY 705 (710)
Q Consensus 642 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~~ 705 (710)
.. ++|+.|++++ |+ +..+|.. ...|..|++++|.|+.+|..+
T Consensus 400 l~---s~L~~LdLS~--------------N~-LssIP~l----~~~L~~L~Ls~NqLt~LP~sl 441 (788)
T PRK15387 400 LP---SELKELMVSG--------------NR-LTSLPML----PSGLLSLSVYRNQLTRLPESL 441 (788)
T ss_pred cc---cCCCEEEccC--------------Cc-CCCCCcc----hhhhhhhhhccCcccccChHH
Confidence 43 5799999984 33 4568863 246889999999999998764
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=3.7e-17 Score=181.80 Aligned_cols=226 Identities=19% Similarity=0.261 Sum_probs=165.0
Q ss_pred ccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEcccc
Q 005181 428 KLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRY 507 (710)
Q Consensus 428 ~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~ 507 (710)
++|+.|+|++|.++.+|..+. ++|+.|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|+.|+++ +
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls-~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLF-H 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECc-C
Confidence 478899999999988887654 589999999999988887653 478999999998888887664 578999998 5
Q ss_pred ccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeeccc
Q 005181 508 NYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTY 586 (710)
Q Consensus 508 n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 586 (710)
|.++.. +. ..+.+|+.|+|++| +..+|..+. ++|+.|++++|.++..+ ..+ .++|+.|++++|.
T Consensus 272 N~L~~L-P~---------~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~ 336 (754)
T PRK15370 272 NKISCL-PE---------NLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALP-ETL--PPGLKTLEAGENA 336 (754)
T ss_pred CccCcc-cc---------ccCCCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCC-ccc--cccceeccccCCc
Confidence 666532 22 12347899999988 777776543 47888899999887643 322 3688889999888
Q ss_pred CCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcc
Q 005181 587 DYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTK 666 (710)
Q Consensus 587 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~ 666 (710)
+..+ |..+ +++|+.|++++|.+. .+|..+ .++|+.|+|++|.+. .+|..+. .+|+.|+++
T Consensus 337 Lt~L-P~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs----------- 396 (754)
T PRK15370 337 LTSL-PASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQAS----------- 396 (754)
T ss_pred cccC-Chhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhc-----------
Confidence 7764 3322 368999999998765 355443 368899999999876 5676554 367888887
Q ss_pred cCCcCccccCcCeEEE---EEEeCCeeeEeehhhhc
Q 005181 667 DENWGKVTEHIPDVLV---TFLAAGRVFQYRKDILS 699 (710)
Q Consensus 667 ~~~~n~~~~~ip~~~~---~~~~~l~~l~l~~N~l~ 699 (710)
+|++ ..+|..+. ...+.+..+++.+|.++
T Consensus 397 ---~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 397 ---RNNL-VRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ---cCCc-ccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4333 46776542 23367889999999987
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=3e-17 Score=182.47 Aligned_cols=244 Identities=16% Similarity=0.157 Sum_probs=183.8
Q ss_pred ceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEEecc
Q 005181 381 KTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKN 460 (710)
Q Consensus 381 ~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~ 460 (710)
+...+.+........|... .+.++.|.+.++... .++ ..+ +++|++|++++|.++.+|..+. .+|+.|++++
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt--sLP-~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELK--SLP-ENL--QGNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC--cCC-hhh--ccCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 3456777666665554322 367999999887652 333 333 2589999999999999987653 5799999999
Q ss_pred ccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-
Q 005181 461 TEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN- 539 (710)
Q Consensus 461 n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n- 539 (710)
|.+..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++ |.++... . ..+.+|+.|++++|
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP-~---------~lp~sL~~L~Ls~N~ 315 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLP-A---------HLPSGITHLNVQSNS 315 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCc-c---------cchhhHHHHHhcCCc
Confidence 99999998764 589999999999999998664 5899999995 5665432 1 12347999999999
Q ss_pred CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecC
Q 005181 540 MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEK 619 (710)
Q Consensus 540 ~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 619 (710)
+..+|..+. ++|+.|++++|.++.. |..+ .++|+.|++++|.+... |..+ .++|+.|+|++|.+.. +|..+
T Consensus 316 Lt~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~-LP~~l 386 (754)
T PRK15370 316 LTALPETLP--PGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTN-LPENL 386 (754)
T ss_pred cccCCcccc--ccceeccccCCccccC-Chhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCC-CCHhH
Confidence 777886543 7899999999999874 4444 37999999999988754 3333 4799999999998764 55443
Q ss_pred CcCCCccEEEEccCCCCCCCccc----cccCCCCcEEEEecCcH
Q 005181 620 GAMPDIRELEIGPCPLLMEIPIG----IEHLRNLKLLRFDCMVK 659 (710)
Q Consensus 620 ~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~~~~ 659 (710)
. +.|+.|++++|++. .+|.. ...++++..|++.+|+.
T Consensus 387 ~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 387 P--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred H--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 2 47999999999986 56654 44568899999997764
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.1e-18 Score=148.06 Aligned_cols=169 Identities=28% Similarity=0.327 Sum_probs=121.2
Q ss_pred cCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhh
Q 005181 442 YLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVA 521 (710)
Q Consensus 442 ~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~ 521 (710)
.+|. +.++.+++.|.|++|.++.+|+.+..+.+|+.|++++|+++.+|..++.+++|++|+++ .|.+.
T Consensus 25 ~~~g-Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg-mnrl~---------- 92 (264)
T KOG0617|consen 25 ELPG-LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLN---------- 92 (264)
T ss_pred hccc-ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc-hhhhh----------
Confidence 3443 44778888888999999988889999999999999999999999989999988888887 23321
Q ss_pred hccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCC-ccccccccccccceEEeecccCCceeEEecCCCCc
Q 005181 522 KSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAE-EPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPK 600 (710)
Q Consensus 522 ~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 600 (710)
.+|..|+.+|.|+.|+|++|++.+ ..|+.|-.+..|+-|.|++|.+. .+|..++.+.+
T Consensus 93 --------------------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~ 151 (264)
T KOG0617|consen 93 --------------------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN 151 (264)
T ss_pred --------------------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc
Confidence 346667777777777777777644 34566666777777777776653 34556677777
Q ss_pred ccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCcccccc
Q 005181 601 LQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEH 645 (710)
Q Consensus 601 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 645 (710)
|+.|.+..|.++. +|..++.+..|+.|++.+|.+. .+|..+.+
T Consensus 152 lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 152 LQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred eeEEeeccCchhh-CcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 7777777776443 5666677777777777777754 45555443
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.64 E-value=8e-18 Score=163.27 Aligned_cols=254 Identities=17% Similarity=0.127 Sum_probs=143.3
Q ss_pred CceeEEEEEccCcccccc--cCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCC-CCCccCc-ccccCcccceE
Q 005181 380 SKTRRIAIQRSIDDGALE--SIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLED-APVDYLP-EGVGNLFNLHY 455 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~l~-~~~~~l~~L~~ 455 (710)
.....+.+..+.+..+|+ +...++||.|.+.++.. ..+-+.+|..++.+..|-+.+ |+|+.+| ..|.++..|+.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 445556666666655543 44455666666665554 345555666666665554444 5566664 33556666666
Q ss_pred EEeccccccccC-cchhcccCCCEEEcCCCccccccc-cccccccCcEEEccccccccCccCCchhh-------------
Q 005181 456 LSVKNTEVKIIP-KSIRNLLSLEILDLKNTLVSELPV-EIRNLKKLRYLMVYRYNYTTGSIMPAEAV------------- 520 (710)
Q Consensus 456 L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~n~~~~~~~~~~~~------------- 520 (710)
|.+.-|.+.-++ +.|..+++|..|.+..|.+..++. .|..+.+++.+.+..|..+..-..++...
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 666666666333 336677777777777777777776 57777777777776544222211111100
Q ss_pred -----------hhccC--CCCcCccEE----EEeecC-CCCCc-cccCCCCccEEEEEeeccCCccccccccccccceEE
Q 005181 521 -----------AKSLS--SPPQYLQRL----YLMGNM-KKLPD-WIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELR 581 (710)
Q Consensus 521 -----------~~~l~--~~~~~L~~L----~L~~n~-~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 581 (710)
..... ...-+++.+ ....+. ..-|. .|..+++|+.|+|++|+++.+...+|.....++.|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 00000 000011111 111111 12232 456667777777777777766666777777777777
Q ss_pred eecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCC
Q 005181 582 LTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPL 635 (710)
Q Consensus 582 L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 635 (710)
|..|.+..+....|.++..|+.|+|.+|+++...|..|..+..|..|++-.|++
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 777766655555666667777777777776666666666666666666666654
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.64 E-value=3.3e-18 Score=165.92 Aligned_cols=126 Identities=21% Similarity=0.259 Sum_probs=86.9
Q ss_pred cccEEecCCCCCccCc-ccccCcccceEEEecccccc-ccCcchhcccCCCEEEcC-CCcccccccc-ccccccCcEEEc
Q 005181 429 LMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTEVK-IIPKSIRNLLSLEILDLK-NTLVSELPVE-IRNLKKLRYLMV 504 (710)
Q Consensus 429 ~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~-~n~~~~~~~~-~~~l~~L~~L~l 504 (710)
....+.|..|.|+.+| .+|+.+++|+.|+|++|.|+ .-|..|.++.+|..|-+. +|.|+.+|.. |.+|..|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3567888888888884 56888888888888888888 445668888887777666 4788888874 777888888877
Q ss_pred cccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCc-cccCCCCccEEEEEeec
Q 005181 505 YRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPD-WIFKLENLIRLGLELSG 562 (710)
Q Consensus 505 ~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~-~~~~l~~L~~L~L~~n~ 562 (710)
.- +.+.-.. ...+...++|..|.+-.| ...++. .|..+..++.+.+..|.
T Consensus 148 Na-n~i~Cir-------~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 148 NA-NHINCIR-------QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred Ch-hhhcchh-------HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 63 3332222 122222336666677666 566665 56777777777776665
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.63 E-value=4.1e-14 Score=167.88 Aligned_cols=310 Identities=15% Similarity=0.156 Sum_probs=195.2
Q ss_pred ccccccCCCCCceeecccchhhc--cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHH
Q 005181 12 VDRIIFNFPHAGFSGKEDNNQLI--QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRT 88 (710)
Q Consensus 12 ~~~~~~~~~~~~~vGre~~~~~i--~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~ 88 (710)
.++..++..+.++|-|+..++++ ....+++.|+||+|.||||++.++++. . +.++|+++.... ++..+...
T Consensus 4 ~~k~~~p~~~~~~~~R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~--~----~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 4 PSKLSRPVRLHNTVVRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG--K----NNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCCCCCccccCcchHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh--C----CCeEEEecCcccCCHHHHHHH
Confidence 35667777788999999999999 445789999999999999999999864 1 268999986544 55667677
Q ss_pred HHHHHhhhcCCCCCc------cccchhHHHHHHHHHHHhc--CCceEEEEecCCCcc--hHH-HHHHhcCCCCCCcEEEE
Q 005181 89 ILKEFHRVANQPAPV------EIHDMEEMELITTLRDHLK--DKSYMVVFDDVWKID--FWG-DVEYALLDSKKCGRIIV 157 (710)
Q Consensus 89 i~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~--~~~~LlvlDdv~~~~--~~~-~~~~~l~~~~~~~~ilv 157 (710)
++..+........+. .....+...+...+...+. +.+++||+||+...+ ... .+...+...+.+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 777775332211000 0011122233444443333 578999999998764 222 33334444556668889
Q ss_pred EcCchhhhhhccCCCCcceEEcc----CCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhh
Q 005181 158 TTRHMNVAKYCKSSSSVHVHELE----TLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLL 233 (710)
Q Consensus 158 TtR~~~~~~~~~~~~~~~~~~l~----~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 233 (710)
|||...-.............++. +|+.+|+.++|....... -..+.+.+|.+.|+|+|+++.+++..+
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--------~~~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP--------IEAAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC--------CCHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99984222111100011345566 999999999998765221 134678899999999999999998877
Q ss_pred cCCCCCHHHHHHHHHhhccccCCCcchhhHHHHHHh-cccCCchhHHHHHhhhcCCCCCcccchhHHHHHHHHCCCCCCC
Q 005181 234 STKNMVVSEWKKLFDRMGSILGSDPHLKDCNRVLSE-GYHDLPHHLKSCLLYFGLFPESCKVNCARLIRLWIAEGFVPYC 312 (710)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-s~~~L~~~~~~~~l~la~f~~~~~~~~~~l~~~w~~~g~~~~~ 312 (710)
+....+... ....+. .. ....+...+.. .++.|+++.+.+++.+++++ .++.+ +... ..+
T Consensus 230 ~~~~~~~~~---~~~~~~----~~-~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~~-----l~~-- 290 (903)
T PRK04841 230 RQNNSSLHD---SARRLA----GI-NASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIVR-----VTG-- 290 (903)
T ss_pred hhCCCchhh---hhHhhc----CC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHHH-----HcC--
Confidence 554321111 111111 00 01234444333 47899999999999999986 23322 2221 111
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeeecCCCCCEeEEEEcHhHHHHHHHhh
Q 005181 313 KRPTSEQVAEECLNELIDRSLVQVSERDISGRARICQVHDLMHEIVVRKT 362 (710)
Q Consensus 313 ~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~h~li~~~~~~~~ 362 (710)
.+.....++.|.+.+++....++. + ..|++|++++++++...
T Consensus 291 -----~~~~~~~L~~l~~~~l~~~~~~~~-~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 -----EENGQMRLEELERQGLFIQRMDDS-G--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred -----CCcHHHHHHHHHHCCCeeEeecCC-C--CEEehhHHHHHHHHHHH
Confidence 112467899999999875433221 1 35888999999988765
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-17 Score=143.59 Aligned_cols=159 Identities=26% Similarity=0.305 Sum_probs=125.6
Q ss_pred hcccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEE
Q 005181 424 IANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLM 503 (710)
Q Consensus 424 ~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~ 503 (710)
+-++++++.|.|++|.++.+|..+..+.+|+.|++.+|+|..+|.+++.+++|+.|++.-|.+..+|.+|+.++.|+.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 34667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEe
Q 005181 504 VYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRL 582 (710)
Q Consensus 504 l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 582 (710)
++.||.-....|. .++. ...|+.|+|+.| .+.+|..++++++|+.|.+..|.+.. .|..++.+..|+.|.+
T Consensus 109 ltynnl~e~~lpg------nff~-m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 109 LTYNNLNENSLPG------NFFY-MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHI 180 (264)
T ss_pred ccccccccccCCc------chhH-HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhc
Confidence 9965443333332 2222 235677777777 66777777888888888887777654 4667777777888887
Q ss_pred ecccCCce
Q 005181 583 TGTYDYEL 590 (710)
Q Consensus 583 ~~n~~~~~ 590 (710)
.+|++.-.
T Consensus 181 qgnrl~vl 188 (264)
T KOG0617|consen 181 QGNRLTVL 188 (264)
T ss_pred ccceeeec
Confidence 77776554
No 24
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.54 E-value=4e-13 Score=144.02 Aligned_cols=316 Identities=14% Similarity=0.181 Sum_probs=211.2
Q ss_pred eeeccccccCCCCCceeecccchhhc--cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC-HHHH
Q 005181 9 ERSVDRIIFNFPHAGFSGKEDNNQLI--QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK-KNDL 85 (710)
Q Consensus 9 ~~~~~~~~~~~~~~~~vGre~~~~~i--~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~ 85 (710)
+...++..++.++.+.|-|...++++ ....|.+.|+.|+|.||||++.++++. ...-..|.|++++...+ +..+
T Consensus 6 ~~~~sk~~~P~~~~~~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dndp~rF 82 (894)
T COG2909 6 MLIPSKLVRPVRPDNYVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDNDPARF 82 (894)
T ss_pred CCCccccCCCCCcccccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCCHHHH
Confidence 44566777787899999999999999 557899999999999999999999863 22335789999877654 6677
Q ss_pred HHHHHHHHhhhcCCCCC------ccccchhHHHHHHHHHHHhcC--CceEEEEecCCCcc---hHHHHHHhcCCCCCCcE
Q 005181 86 LRTILKEFHRVANQPAP------VEIHDMEEMELITTLRDHLKD--KSYMVVFDDVWKID---FWGDVEYALLDSKKCGR 154 (710)
Q Consensus 86 ~~~i~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~--~~~LlvlDdv~~~~---~~~~~~~~l~~~~~~~~ 154 (710)
++-++..+..-...... ......+...+++.+...+.. ++.++||||..-.. -...+.-.+...+.+-.
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~ 162 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLT 162 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeE
Confidence 77777777632211100 011122334566666666654 68999999986543 33344445556667778
Q ss_pred EEEEcCchhhhhhccCCCCcceEEccC----CCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHH
Q 005181 155 IIVTTRHMNVAKYCKSSSSVHVHELET----LPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVG 230 (710)
Q Consensus 155 ilvTtR~~~~~~~~~~~~~~~~~~l~~----l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 230 (710)
.+||||+..-.......-....++++. |+.+|+.++|......+ -....+..+.++..|++-|+.+++
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~--------Ld~~~~~~L~~~teGW~~al~L~a 234 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP--------LDAADLKALYDRTEGWAAALQLIA 234 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC--------CChHHHHHHHhhcccHHHHHHHHH
Confidence 999999976544433332234555554 89999999998886221 224678999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHhhccccCCCcchhhHHHH-HHhcccCCchhHHHHHhhhcCCCCCcccchhHHHHHHHHCCCC
Q 005181 231 GLLSTKNMVVSEWKKLFDRMGSILGSDPHLKDCNRV-LSEGYHDLPHHLKSCLLYFGLFPESCKVNCARLIRLWIAEGFV 309 (710)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~s~~~L~~~~~~~~l~la~f~~~~~~~~~~l~~~w~~~g~~ 309 (710)
=.+++. .+.+.--.. +.+. ..-+.+. ..--++.||++.|.+++.+++++.- . ++++....
T Consensus 235 La~~~~-~~~~q~~~~-------LsG~--~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~Lt----- 295 (894)
T COG2909 235 LALRNN-TSAEQSLRG-------LSGA--ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNALT----- 295 (894)
T ss_pred HHccCC-CcHHHHhhh-------ccch--HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHHh-----
Confidence 888733 222211111 1111 0222222 2335799999999999999998642 1 22332211
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCceeeeecCCCCCEeEEEEcHhHHHHHHHhhcC
Q 005181 310 PYCKRPTSEQVAEECLNELIDRSLVQVSERDISGRARICQVHDLMHEIVVRKTEG 364 (710)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~h~li~~~~~~~~~~ 364 (710)
.++.+...+++|..++++-..-++.. .+|++|.++.+|.+.....
T Consensus 296 -------g~~ng~amLe~L~~~gLFl~~Ldd~~---~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 296 -------GEENGQAMLEELERRGLFLQRLDDEG---QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -------cCCcHHHHHHHHHhCCCceeeecCCC---ceeehhHHHHHHHHhhhcc
Confidence 12336778999999998876554433 5699999999998877654
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=2.9e-16 Score=162.64 Aligned_cols=237 Identities=18% Similarity=0.125 Sum_probs=141.3
Q ss_pred hhhhhhcccccccEEecCCCCCc-----cCcccccCcccceEEEeccccccc-------cCcchhcccCCCEEEcCCCcc
Q 005181 419 FMNASIANFKLMKVLDLEDAPVD-----YLPEGVGNLFNLHYLSVKNTEVKI-------IPKSIRNLLSLEILDLKNTLV 486 (710)
Q Consensus 419 ~~~~~~~~~~~L~~L~l~~n~~~-----~l~~~~~~l~~L~~L~l~~n~i~~-------lp~~~~~l~~L~~L~l~~n~~ 486 (710)
.....+..+.+|+.|+++++.++ .++..+...++|+.|+++++.+.. ++..+..+++|+.|++++|.+
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 34456667777888888888773 345556667778888887776552 234456677888888887766
Q ss_pred c-ccccccccccc---CcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CC-----CCCccccCCCCccEE
Q 005181 487 S-ELPVEIRNLKK---LRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MK-----KLPDWIFKLENLIRL 556 (710)
Q Consensus 487 ~-~~~~~~~~l~~---L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~-----~ip~~~~~l~~L~~L 556 (710)
. ..+..+..+.+ |++|++++ +.+++.... .....+...+++|+.|++++| +. .++..+..+++|+.|
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~-~~~~~~~~~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNN-NGLGDRGLR--LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeC-CccchHHHH--HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE
Confidence 4 33334444444 88888874 334321111 011122223257778887777 33 234455666778888
Q ss_pred EEEeeccCCcc----ccccccccccceEEeecccCCce----eEEecCCCCcccEEEeccCCCceeeeecC-----CcCC
Q 005181 557 GLELSGLAEEP----IRVLQASPNLLELRLTGTYDYEL----FHFEAGWFPKLQKLLLWDFVAVKSVIIEK-----GAMP 623 (710)
Q Consensus 557 ~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~-----~~l~ 623 (710)
++++|.+++.. +..+..+++|+.|++++|.+... +...+..+++|+.|++++|.+.......+ ...+
T Consensus 171 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~ 250 (319)
T cd00116 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250 (319)
T ss_pred ECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence 88888776422 23344556788888887766532 12234566778888888877654211111 1236
Q ss_pred CccEEEEccCCCCC----CCccccccCCCCcEEEEecCc
Q 005181 624 DIRELEIGPCPLLM----EIPIGIEHLRNLKLLRFDCMV 658 (710)
Q Consensus 624 ~L~~L~l~~n~~~~----~~p~~~~~l~~L~~L~l~~~~ 658 (710)
.|+.|++++|.+.. .++..+..+++|+++++++|.
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 78888888887652 233445566778888887553
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=3.2e-15 Score=154.82 Aligned_cols=254 Identities=18% Similarity=0.084 Sum_probs=162.4
Q ss_pred CCceeEEEeecCCCCCc--chhhhhhcccccccEEecCCCCCcc-------CcccccCcccceEEEecccccc-ccCcch
Q 005181 401 DSKVRSVFLFNVDKLPD--SFMNASIANFKLMKVLDLEDAPVDY-------LPEGVGNLFNLHYLSVKNTEVK-IIPKSI 470 (710)
Q Consensus 401 ~~~l~~l~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~-------l~~~~~~l~~L~~L~l~~n~i~-~lp~~~ 470 (710)
...++.+.+.++..... ..++..+...++++.|+++++.+.. ++..+..+++|+.|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 34477777776654322 2244556677778888888776552 2345566778888888888776 344445
Q ss_pred hcccC---CCEEEcCCCcccc-----cccccccc-ccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-C
Q 005181 471 RNLLS---LEILDLKNTLVSE-----LPVEIRNL-KKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-M 540 (710)
Q Consensus 471 ~~l~~---L~~L~l~~n~~~~-----~~~~~~~l-~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~ 540 (710)
..+.+ |++|++++|.+.. +...+..+ ++|+.|++++ +.+++.... ..........+|++|++++| +
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~---~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGR-NRLEGASCE---ALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCC-CcCCchHHH---HHHHHHHhCCCcCEEECcCCCC
Confidence 54444 8888888776652 23344556 7888888885 444432211 11112223347888888887 3
Q ss_pred C-----CCCccccCCCCccEEEEEeeccCCcc----ccccccccccceEEeecccCCceeEEec-----CCCCcccEEEe
Q 005181 541 K-----KLPDWIFKLENLIRLGLELSGLAEEP----IRVLQASPNLLELRLTGTYDYELFHFEA-----GWFPKLQKLLL 606 (710)
Q Consensus 541 ~-----~ip~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~~~~~~~~~~-----~~~~~L~~L~L 606 (710)
. .++..+..+++|+.|++++|.++... ...+..+++|++|++++|.+.......+ ...+.|+.|++
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence 3 23444566689999999999886533 3445678899999999988764211111 13479999999
Q ss_pred ccCCCce----eeeecCCcCCCccEEEEccCCCCCC----CccccccC-CCCcEEEEecCc
Q 005181 607 WDFVAVK----SVIIEKGAMPDIRELEIGPCPLLME----IPIGIEHL-RNLKLLRFDCMV 658 (710)
Q Consensus 607 ~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~l-~~L~~L~l~~~~ 658 (710)
++|.+.. .+...+..+++|+.+++++|.+... +...+... +.|+.|++.++|
T Consensus 258 ~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 9998752 2233455668999999999998753 44445555 788888887654
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.43 E-value=4e-11 Score=127.65 Aligned_cols=312 Identities=16% Similarity=0.135 Sum_probs=182.5
Q ss_pred cCCCCCceeecccchhhc---------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHH
Q 005181 17 FNFPHAGFSGKEDNNQLI---------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLR 87 (710)
Q Consensus 17 ~~~~~~~~vGre~~~~~i---------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (710)
+...|+.|+|||++++.| ......+.|+|++|+|||+++++++++.......-.++|+++....+...++.
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 334578899999999988 23446789999999999999999998742222223567788777777788888
Q ss_pred HHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhc--CCceEEEEecCCCcc------hHHHHHHhcCCCCCCcE--EEE
Q 005181 88 TILKEFHRVANQPAPVEIHDMEEMELITTLRDHLK--DKSYMVVFDDVWKID------FWGDVEYALLDSKKCGR--IIV 157 (710)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~LlvlDdv~~~~------~~~~~~~~l~~~~~~~~--ilv 157 (710)
.++.++..... .....+..+....+.+.++ ++.++||+|+++... .+..+...+... .+++ +|.
T Consensus 105 ~i~~~l~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~ 178 (394)
T PRK00411 105 EIARQLFGHPP-----PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIG 178 (394)
T ss_pred HHHHHhcCCCC-----CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEE
Confidence 88888864210 1112234566777777765 356899999998743 222332222222 2322 555
Q ss_pred EcCchhhhhhcc----CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHh----CCCchHHHHH
Q 005181 158 TTRHMNVAKYCK----SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKC----GGLPLAIVAV 229 (710)
Q Consensus 158 TtR~~~~~~~~~----~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plal~~~ 229 (710)
++....+..... .......+.++|++.++..+++...+.....+.... .+.++.+++.+ |..+.|+.++
T Consensus 179 i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~---~~~l~~i~~~~~~~~Gd~r~a~~ll 255 (394)
T PRK00411 179 ISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVD---DEVLDLIADLTAREHGDARVAIDLL 255 (394)
T ss_pred EECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCC---HhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 555543322211 111125689999999999999998874321111112 23334444433 4456666665
Q ss_pred Hhhh-----cC-CCCCHHHHHHHHHhhccccCCCcchhhHHHHHHhcccCCchhHHHHHhhhcCCCC--CcccchhHHHH
Q 005181 230 GGLL-----ST-KNMVVSEWKKLFDRMGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGLFPE--SCKVNCARLIR 301 (710)
Q Consensus 230 ~~~l-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~la~f~~--~~~~~~~~l~~ 301 (710)
.... ++ ...+.+..+.+.+... ...+...+..|+.++|..+..++...+ ...+...++..
T Consensus 256 ~~a~~~a~~~~~~~I~~~~v~~a~~~~~------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~ 323 (394)
T PRK00411 256 RRAGLIAEREGSRKVTEEDVRKAYEKSE------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYE 323 (394)
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 4322 11 1124555555555431 123445688999999988877764432 12345555443
Q ss_pred --HHHHCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeeec--CCCCCEeEEEEcH
Q 005181 302 --LWIAEGFVPYCKRPTSEQVAEECLNELIDRSLVQVSER--DISGRARICQVHD 352 (710)
Q Consensus 302 --~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~--~~~~~~~~~~~h~ 352 (710)
..+++.... .........++++.|.+.+++..... ...|+.+.+.++.
T Consensus 324 ~y~~l~~~~~~---~~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~ 375 (394)
T PRK00411 324 EYKELCEELGY---EPRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSY 375 (394)
T ss_pred HHHHHHHHcCC---CcCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecC
Confidence 233322211 11123456779999999999987543 2334555555543
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.40 E-value=6.9e-11 Score=124.52 Aligned_cols=305 Identities=16% Similarity=0.146 Sum_probs=174.6
Q ss_pred cCCCCCceeecccchhhc---------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccc-cC--c-CcEEEEEeCCCCCHH
Q 005181 17 FNFPHAGFSGKEDNNQLI---------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLK-TH--F-NCRAWITVGKEYKKN 83 (710)
Q Consensus 17 ~~~~~~~~vGre~~~~~i---------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~-~~--f-~~~~~v~~~~~~~~~ 83 (710)
+...|+.++|||++++.| ....+.+.|+|++|+|||++++++++..... .. . -.++|+++....+..
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 344577899999999988 2345789999999999999999998763111 11 1 246788887777788
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhc--CCceEEEEecCCCcc-hHHH-HHHhcCC----CC--CCc
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLK--DKSYMVVFDDVWKID-FWGD-VEYALLD----SK--KCG 153 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~LlvlDdv~~~~-~~~~-~~~~l~~----~~--~~~ 153 (710)
.++..++.++... +...+ ....+..+....+.+.+. ++++++|||+++... ..+. +...+.. .. ...
T Consensus 90 ~~~~~i~~~l~~~-~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 90 QVLVELANQLRGS-GEEVP--TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred HHHHHHHHHHhhc-CCCCC--CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 8899999888531 11111 112233345555655553 467899999998772 1112 2222211 11 222
Q ss_pred EEEEEcCchhhhhhcc----CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch-HHHH
Q 005181 154 RIIVTTRHMNVAKYCK----SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL-AIVA 228 (710)
Q Consensus 154 ~ilvTtR~~~~~~~~~----~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~ 228 (710)
.+|.++.......... ..-....+.++|++.+|..+++..++.....+........+.+.+++....|.+- |+.+
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 3444554443222111 1111246899999999999999988742111122233333455667777778873 3333
Q ss_pred HHhhh----c-C-CCCCHHHHHHHHHhhccccCCCcchhhHHHHHHhcccCCchhHHHHHhhhcCCC--CCcccchhHHH
Q 005181 229 VGGLL----S-T-KNMVVSEWKKLFDRMGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGLFP--ESCKVNCARLI 300 (710)
Q Consensus 229 ~~~~l----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~la~f~--~~~~~~~~~l~ 300 (710)
+-... . + ...+.+..+.+.+... ...+...+..|+.+++.++..++... ....+...++.
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~~------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~ 314 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKIE------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVY 314 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 22211 1 1 1134444554444431 12344567788888887776665322 22335555544
Q ss_pred HHH--HHCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeeec
Q 005181 301 RLW--IAEGFVPYCKRPTSEQVAEECLNELIDRSLVQVSER 339 (710)
Q Consensus 301 ~~w--~~~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~ 339 (710)
..+ +++.+. ..........++++.|...|++.....
T Consensus 315 ~~y~~~~~~~~---~~~~~~~~~~~~l~~l~~~gli~~~~~ 352 (365)
T TIGR02928 315 EVYKEVCEDIG---VDPLTQRRISDLLNELDMLGLVEAEER 352 (365)
T ss_pred HHHHHHHHhcC---CCCCcHHHHHHHHHHHHhcCCeEEEEE
Confidence 421 233221 113345678889999999999987654
No 29
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.29 E-value=2.4e-11 Score=119.97 Aligned_cols=221 Identities=15% Similarity=0.150 Sum_probs=133.9
Q ss_pred CCceeecccchhhc--cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcC
Q 005181 21 HAGFSGKEDNNQLI--QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVAN 98 (710)
Q Consensus 21 ~~~~vGre~~~~~i--~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 98 (710)
..+++|.+..+.+. .+....+.+|||+|+||||||+.++.. ....| ..++...+...-+++
T Consensus 29 Q~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~---------- 91 (436)
T COG2256 29 QEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLRE---------- 91 (436)
T ss_pred hHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHH----------
Confidence 56677777777776 667788889999999999999999887 44443 334443333222232
Q ss_pred CCCCccccchhHHHHHHHH-HHHhcCCceEEEEecCCCcchHHHHHHhcCCCCCCcEEEE--EcCchhhhhhccCCCCcc
Q 005181 99 QPAPVEIHDMEEMELITTL-RDHLKDKSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIV--TTRHMNVAKYCKSSSSVH 175 (710)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilv--TtR~~~~~~~~~~~~~~~ 175 (710)
+.+.- +....+++.+|++|.|.....- +....+|....|.-|+| ||.++...-.....++.+
T Consensus 92 --------------i~e~a~~~~~~gr~tiLflDEIHRfnK~-QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 92 --------------IIEEARKNRLLGRRTILFLDEIHRFNKA-QQDALLPHVENGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred --------------HHHHHHHHHhcCCceEEEEehhhhcChh-hhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 23333 2233489999999999876521 23345677777877777 888876554444445558
Q ss_pred eEEccCCCchhHHHHHHHHHcCCCCCCC--CchhHHHHHHHHHHHhCCCchH----HHHHHhhhcCCC-CCHHHHHHHHH
Q 005181 176 VHELETLPPNEAWKLFCRKAFGPSSGGS--CPSELRELSRDILAKCGGLPLA----IVAVGGLLSTKN-MVVSEWKKLFD 248 (710)
Q Consensus 176 ~~~l~~l~~~ea~~l~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Pla----l~~~~~~l~~~~-~~~~~~~~~~~ 248 (710)
++++++|+.+|...++.+.+.....+-. .....++....++..++|---+ |++++..-+... ...+..+..+.
T Consensus 157 vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~ 236 (436)
T COG2256 157 VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQ 236 (436)
T ss_pred eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHh
Confidence 9999999999999999996543322211 1112344667788888876432 344444333321 13455555555
Q ss_pred hhccccCCC-cchhhHHHHHHhcccC
Q 005181 249 RMGSILGSD-PHLKDCNRVLSEGYHD 273 (710)
Q Consensus 249 ~~~~~~~~~-~~~~~~~~~l~~s~~~ 273 (710)
+-....+.. +..=.+..+|..|...
T Consensus 237 ~~~~~~Dk~gD~hYdliSA~hKSvRG 262 (436)
T COG2256 237 RRSARFDKDGDAHYDLISALHKSVRG 262 (436)
T ss_pred hhhhccCCCcchHHHHHHHHHHhhcc
Confidence 433322222 2223445556666654
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.24 E-value=3.8e-11 Score=118.22 Aligned_cols=197 Identities=17% Similarity=0.158 Sum_probs=99.3
Q ss_pred eeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHH---------
Q 005181 24 FSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTI--------- 89 (710)
Q Consensus 24 ~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i--------- 89 (710)
|+||+.|++.| .+..+.+.|+|+.|+|||+|++++.+.. +..-..++|+...... .......+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEES-NESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBS-HHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccch-hhhHHHHHHHHHHHHHH
Confidence 79999999999 4457899999999999999999998873 2222245555554443 22222222
Q ss_pred -HHHHhhhcCCCCCcc---ccchhHHHHHHHHHHHhc--CCceEEEEecCCCcc-----------hHHHHHHhcCCCCCC
Q 005181 90 -LKEFHRVANQPAPVE---IHDMEEMELITTLRDHLK--DKSYMVVFDDVWKID-----------FWGDVEYALLDSKKC 152 (710)
Q Consensus 90 -~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~--~~~~LlvlDdv~~~~-----------~~~~~~~~l~~~~~~ 152 (710)
...+........... ............+.+.+. ++++++|+||++... .+..+........+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 122222211111000 011111222333333333 245999999997655 111122222223344
Q ss_pred cEEEEEcCchhhhhh-----ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHH
Q 005181 153 GRIIVTTRHMNVAKY-----CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIV 227 (710)
Q Consensus 153 ~~ilvTtR~~~~~~~-----~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 227 (710)
+.|+++|.. .+... .........+.+++|+.+++.+++....... ... +...+..++|++.+||+|..|.
T Consensus 158 ~~v~~~S~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 158 SIVITGSSD-SLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EEEEEESSH-HHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC----------HHHHHHHHHHHTT-HHHHH
T ss_pred eEEEECCch-HHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 445445543 23322 1111223469999999999999999976332 111 1235678999999999998875
Q ss_pred H
Q 005181 228 A 228 (710)
Q Consensus 228 ~ 228 (710)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 3
No 31
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.17 E-value=3.2e-09 Score=106.78 Aligned_cols=190 Identities=17% Similarity=0.168 Sum_probs=111.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
..+.++++|+|++|+||||+++++++.... ..+ .++|+ +....+..+++..++..++..... .........+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~----~~~~~~~~~l~ 112 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG----RDKAALLRELE 112 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC----CCHHHHHHHHH
Confidence 455678999999999999999999887421 111 12232 233346667777777766443210 10011111222
Q ss_pred HHHHHHh-cCCceEEEEecCCCcc--hHHHHHHhcCC---CCCCcEEEEEcCchhhhhhccC-------CCCcceEEccC
Q 005181 115 TTLRDHL-KDKSYMVVFDDVWKID--FWGDVEYALLD---SKKCGRIIVTTRHMNVAKYCKS-------SSSVHVHELET 181 (710)
Q Consensus 115 ~~~~~~l-~~~~~LlvlDdv~~~~--~~~~~~~~l~~---~~~~~~ilvTtR~~~~~~~~~~-------~~~~~~~~l~~ 181 (710)
..+.... .+++.++|+||++... .++.+...... ......|++|.... ....... ......+.+++
T Consensus 113 ~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 113 DFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCC
Confidence 2333322 5678999999998875 34444332221 12222455555432 2211110 00124678999
Q ss_pred CCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhh
Q 005181 182 LPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLL 233 (710)
Q Consensus 182 l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 233 (710)
++.+|..+++...+..... .....-..+..+.|++.++|+|..+..++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~-~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLERAGN-RDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHHHcCC-CCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999999887643211 11112245789999999999999998887765
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=9.3e-12 Score=117.07 Aligned_cols=180 Identities=23% Similarity=0.279 Sum_probs=95.0
Q ss_pred hhhhhcccccccEEecCCCCCccCcccccCcccceEEEeccccccccC----cc--------------------hhcccC
Q 005181 420 MNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIP----KS--------------------IRNLLS 475 (710)
Q Consensus 420 ~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp----~~--------------------~~~l~~ 475 (710)
++-.+.-+++|..+.++.+.-..+-.-...-|.|..+.+.+..+...| .. +.....
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~ 285 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQE 285 (490)
T ss_pred cccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhh
Confidence 344455667788888888765544333334467777777776554222 11 112234
Q ss_pred CCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCcc
Q 005181 476 LEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLI 554 (710)
Q Consensus 476 L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~ 554 (710)
|++||||+|.|+.+..+..-+|+++.|++++ |.+.... ++. ..++|+.|+|++| +.++..|=..+-+++
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~--------nLa-~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQ--------NLA-ELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccc-cceeeeh--------hhh-hcccceEeecccchhHhhhhhHhhhcCEe
Confidence 6666666666666666666666666666664 3322111 111 1225555555555 444444445555555
Q ss_pred EEEEEeeccCCccccccccccccceEEeecccCCce-eEEecCCCCcccEEEeccCCC
Q 005181 555 RLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYEL-FHFEAGWFPKLQKLLLWDFVA 611 (710)
Q Consensus 555 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~L~~n~~ 611 (710)
.|.|+.|.+.. ...++++-+|..||+++|++... -...++++|+|+.+.|.+|++
T Consensus 356 tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 356 TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 55555555533 23445555555555555554332 123445555555555555554
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.12 E-value=1.1e-09 Score=112.19 Aligned_cols=270 Identities=18% Similarity=0.084 Sum_probs=140.3
Q ss_pred Cceeecccchhhc----------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHH
Q 005181 22 AGFSGKEDNNQLI----------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILK 91 (710)
Q Consensus 22 ~~~vGre~~~~~i----------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 91 (710)
++|||++.+++.+ .+....+.|+||+|+|||++|+++++.. ...+ .++........ ..+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~-~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKP-GDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCc-hhHHHHHH
Confidence 4799999998877 2335678999999999999999998873 2221 22221111111 11112222
Q ss_pred HHhhhcCCCCCccc---cchhHHHHHHHHHHHhcCCceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCchhhhhhc
Q 005181 92 EFHRVANQPAPVEI---HDMEEMELITTLRDHLKDKSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHMNVAKYC 168 (710)
Q Consensus 92 ~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~~~~~~~ 168 (710)
.+.. ....-. +..+ .+..+.+...+.+.+..+|+++......+. ....+.+-|..|++...+....
T Consensus 78 ~~~~----~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~~li~~t~~~~~l~~~l 146 (305)
T TIGR00635 78 NLEE----GDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVR------LDLPPFTLVGATTRAGMLTSPL 146 (305)
T ss_pred hccc----CCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccccee------ecCCCeEEEEecCCccccCHHH
Confidence 2110 000000 0001 112233444444455555555543333211 1112344566677765443322
Q ss_pred cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhhcCCCCCHHHHHHHHH
Q 005181 169 KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLLSTKNMVVSEWKKLFD 248 (710)
Q Consensus 169 ~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~ 248 (710)
.. .....+.+++++.+|..+++.+.+.... ..-.++.+..|++.|+|.|-.+..+...+ |..+..
T Consensus 147 ~s-R~~~~~~l~~l~~~e~~~il~~~~~~~~-----~~~~~~al~~ia~~~~G~pR~~~~ll~~~---------~~~a~~ 211 (305)
T TIGR00635 147 RD-RFGIILRLEFYTVEELAEIVSRSAGLLN-----VEIEPEAALEIARRSRGTPRIANRLLRRV---------RDFAQV 211 (305)
T ss_pred Hh-hcceEEEeCCCCHHHHHHHHHHHHHHhC-----CCcCHHHHHHHHHHhCCCcchHHHHHHHH---------HHHHHH
Confidence 11 1125689999999999999998875321 12234677899999999996654433322 111110
Q ss_pred hhccccCCCcchhhHHHHHHhcccCCchhHHHHHhhh-cCCCCCcccchhHHHHHHHHCCCCCCCCCCCHHHHHHHHHH-
Q 005181 249 RMGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYF-GLFPESCKVNCARLIRLWIAEGFVPYCKRPTSEQVAEECLN- 326 (710)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~l-a~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~- 326 (710)
.-..... ..........+...+..+++..+..+..+ ..+. +..++...+.... ......+...++
T Consensus 212 ~~~~~it-~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~-~~~~~~~~ia~~l-----------g~~~~~~~~~~e~ 278 (305)
T TIGR00635 212 RGQKIIN-RDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQ-GGPVGLKTLAAAL-----------GEDADTIEDVYEP 278 (305)
T ss_pred cCCCCcC-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhC-CCcccHHHHHHHh-----------CCCcchHHHhhhH
Confidence 0000010 00112223335556788888887777644 4454 3345544444332 112334666677
Q ss_pred HHhhCCceee
Q 005181 327 ELIDRSLVQV 336 (710)
Q Consensus 327 ~L~~~sll~~ 336 (710)
.|++++++..
T Consensus 279 ~Li~~~li~~ 288 (305)
T TIGR00635 279 YLLQIGFLQR 288 (305)
T ss_pred HHHHcCCccc
Confidence 6999999963
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=5.5e-12 Score=121.63 Aligned_cols=234 Identities=15% Similarity=0.141 Sum_probs=140.7
Q ss_pred hhhhcccccccEEecCCCCCc-----cCcccccCcccceEEEeccccc----cccCcc-------hhcccCCCEEEcCCC
Q 005181 421 NASIANFKLMKVLDLEDAPVD-----YLPEGVGNLFNLHYLSVKNTEV----KIIPKS-------IRNLLSLEILDLKNT 484 (710)
Q Consensus 421 ~~~~~~~~~L~~L~l~~n~~~-----~l~~~~~~l~~L~~L~l~~n~i----~~lp~~-------~~~l~~L~~L~l~~n 484 (710)
...+..+..++.|+|++|.+. .+...+.+.++|+..+++.-.. ..+|+. +..+++|++||||.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 345566677777777777765 3445566666777777765321 144443 335567888888877
Q ss_pred ccc--ccc---ccccccccCcEEEccccccccCccCCchhh---------hhccCCCCcCccEEEEeec-CCCCC-----
Q 005181 485 LVS--ELP---VEIRNLKKLRYLMVYRYNYTTGSIMPAEAV---------AKSLSSPPQYLQRLYLMGN-MKKLP----- 544 (710)
Q Consensus 485 ~~~--~~~---~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~---------~~~l~~~~~~L~~L~L~~n-~~~ip----- 544 (710)
-++ .++ .-+.+++.|++|+|. |+.+ .+..... .....+.++.|+.+..+.| +..-+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~-N~Gl---g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLN-NCGL---GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhh-cCCC---ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 543 122 135567778888876 3322 2222211 1223344557888888877 43332
Q ss_pred ccccCCCCccEEEEEeeccCCc----cccccccccccceEEeecccCCce----eEEecCCCCcccEEEeccCCCceeee
Q 005181 545 DWIFKLENLIRLGLELSGLAEE----PIRVLQASPNLLELRLTGTYDYEL----FHFEAGWFPKLQKLLLWDFVAVKSVI 616 (710)
Q Consensus 545 ~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~ 616 (710)
..|...+.|+.+.++.|.+... ....|..+++|+.|||..|.++.. +...+..+++|+.|++++|.+...-.
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 3456678888888888876432 234566788888888888866542 22344567778888888876543211
Q ss_pred e-----cCCcCCCccEEEEccCCCCCC----CccccccCCCCcEEEEecCc
Q 005181 617 I-----EKGAMPDIRELEIGPCPLLME----IPIGIEHLRNLKLLRFDCMV 658 (710)
Q Consensus 617 ~-----~~~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~~~ 658 (710)
. .-...|+|+.|.+.+|.+... +...+...+.|..|+|++|.
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 1 113467888888888877542 22334557778888887764
No 35
>PF05729 NACHT: NACHT domain
Probab=99.11 E-value=4.3e-10 Score=104.05 Aligned_cols=144 Identities=17% Similarity=0.237 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccC----cCcEEEEEeCCCCCHH---HHHHHHHHHHhhhcCCCCCccccchhHH
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTH----FNCRAWITVGKEYKKN---DLLRTILKEFHRVANQPAPVEIHDMEEM 111 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~----f~~~~~v~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 111 (710)
|++.|+|.+|+||||+++++++....... +..++|+......... .+...+.........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------------- 67 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA------------- 67 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------------
Confidence 57899999999999999999877432222 3455666655443332 222222222221110
Q ss_pred HHHHHHHHHh-cCCceEEEEecCCCcch---------HHH-HHHhcCC-CCCCcEEEEEcCchhhhhhccCCCCcceEEc
Q 005181 112 ELITTLRDHL-KDKSYMVVFDDVWKIDF---------WGD-VEYALLD-SKKCGRIIVTTRHMNVAKYCKSSSSVHVHEL 179 (710)
Q Consensus 112 ~~~~~~~~~l-~~~~~LlvlDdv~~~~~---------~~~-~~~~l~~-~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~l 179 (710)
.....+...+ +.+++++|+|++|+... +.+ +...+.. ..++++++||+|................+++
T Consensus 68 ~~~~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l 147 (166)
T PF05729_consen 68 PIEELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILEL 147 (166)
T ss_pred hhHHHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEE
Confidence 1111222222 46899999999987653 122 2233333 3567899999999766332222222268999
Q ss_pred cCCCchhHHHHHHHHH
Q 005181 180 ETLPPNEAWKLFCRKA 195 (710)
Q Consensus 180 ~~l~~~ea~~l~~~~~ 195 (710)
.+|++++..+++.+..
T Consensus 148 ~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 148 EPFSEEDIKQYLRKYF 163 (166)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998774
No 36
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.09 E-value=1.9e-09 Score=104.51 Aligned_cols=194 Identities=18% Similarity=0.246 Sum_probs=124.5
Q ss_pred CccccceeeccccccCCC-CCceeecccchhhc--cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 3 RHPELRERSVDRIIFNFP-HAGFSGKEDNNQLI--QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~vGre~~~~~i--~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
+|-.|.|+-.++-+.... .+++||.+..+..+ ++....+.+|||+|+||||||+-++... +.+ ...||..+..
T Consensus 124 qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts--k~~--SyrfvelSAt 199 (554)
T KOG2028|consen 124 QHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS--KKH--SYRFVELSAT 199 (554)
T ss_pred ccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc--CCC--ceEEEEEecc
Confidence 444566665554444433 66777777767666 7778889999999999999999998873 332 2678888777
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcchHHHHHHhcCCCCCCcEEEE--
Q 005181 80 YKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIV-- 157 (710)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilv-- 157 (710)
.....-.++++++-.. ...+.++|.+|++|.|...... +...++|....|.-++|
T Consensus 200 ~a~t~dvR~ife~aq~----------------------~~~l~krkTilFiDEiHRFNks-QQD~fLP~VE~G~I~lIGA 256 (554)
T KOG2028|consen 200 NAKTNDVRDIFEQAQN----------------------EKSLTKRKTILFIDEIHRFNKS-QQDTFLPHVENGDITLIGA 256 (554)
T ss_pred ccchHHHHHHHHHHHH----------------------HHhhhcceeEEEeHHhhhhhhh-hhhcccceeccCceEEEec
Confidence 6554555555544321 1234578899999999765421 23446788888887777
Q ss_pred EcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHc--CC-CCCC-CCch----hHHHHHHHHHHHhCCCc
Q 005181 158 TTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAF--GP-SSGG-SCPS----ELRELSRDILAKCGGLP 223 (710)
Q Consensus 158 TtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~--~~-~~~~-~~~~----~~~~~~~~i~~~~~g~P 223 (710)
||.++..-......++-.++.+++|..++-..++.+... +. ..+. ..+. ....+.+-++..|.|-.
T Consensus 257 TTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 257 TTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 888875433322222337899999999999999988432 21 1111 1111 23344566666677654
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=2.4e-12 Score=131.33 Aligned_cols=194 Identities=23% Similarity=0.226 Sum_probs=145.9
Q ss_pred cccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccc
Q 005181 427 FKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYR 506 (710)
Q Consensus 427 ~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~ 506 (710)
+..-...||+.|++..+|..+..+..|..+.|+.|.+..+|..+.++..|.+|||+.|.+..+|..++.|+ |+.|.++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s- 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS- 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe-
Confidence 34445678888888888888888888888888888888888888888888888888888888888887776 8888887
Q ss_pred cccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecc
Q 005181 507 YNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGT 585 (710)
Q Consensus 507 ~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 585 (710)
||.++....+ +. ....|..|+.+.| +.++|.-++++.+|+.|++..|++... |..+..+ .|..||++.|
T Consensus 152 NNkl~~lp~~-------ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l-p~El~~L-pLi~lDfScN 221 (722)
T KOG0532|consen 152 NNKLTSLPEE-------IG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL-PEELCSL-PLIRLDFSCN 221 (722)
T ss_pred cCccccCCcc-------cc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC-CHHHhCC-ceeeeecccC
Confidence 5666544322 22 4447778888887 788888888999999999999988664 4555555 5888999988
Q ss_pred cCCceeEEecCCCCcccEEEeccCCCceeeeecC---CcCCCccEEEEccCC
Q 005181 586 YDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEK---GAMPDIRELEIGPCP 634 (710)
Q Consensus 586 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~---~~l~~L~~L~l~~n~ 634 (710)
++.. +|..|..+..|++|-|.+|++. ..|..+ +...-.++|+..-|.
T Consensus 222 kis~-iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 222 KISY-LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ceee-cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 8765 5778889999999999888854 445443 233345677777774
No 38
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.07 E-value=3.2e-09 Score=109.42 Aligned_cols=273 Identities=18% Similarity=0.110 Sum_probs=139.8
Q ss_pred CCceeecccchhhc----------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI----------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTIL 90 (710)
Q Consensus 21 ~~~~vGre~~~~~i----------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (710)
-++|+|++...+.+ ....+.+.|+||+|+|||++|+.+++.. ... ..++... .......+..++
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~---~~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM--GVN---IRITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh--CCC---eEEEecc-cccChHHHHHHH
Confidence 46799999998876 2335688999999999999999999873 221 1222211 111111122222
Q ss_pred HHHhhhcCCCCCccccchhH--HHHHHHHHHHhcCCceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCchhhhhhc
Q 005181 91 KEFHRVANQPAPVEIHDMEE--MELITTLRDHLKDKSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHMNVAKYC 168 (710)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~~~~~~~ 168 (710)
..+.. ....-.++.+. ....+.+...+.+.+..+++|+......+. ..-++.+-|..|++...+....
T Consensus 98 ~~l~~----~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~------~~l~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 98 TNLEE----GDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIR------LDLPPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred Hhccc----CCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccccee------ecCCCceEEeecCCcccCCHHH
Confidence 22110 00000000000 011222333333344444444433222110 0112244566677754333222
Q ss_pred cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhhcCCCCCHHHHHHHHH
Q 005181 169 KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLLSTKNMVVSEWKKLFD 248 (710)
Q Consensus 169 ~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~ 248 (710)
.. .....+++++++.++..+++.+.+.... ..-.++.+..|++.|+|.|-.+..+...+ ..|...
T Consensus 168 ~s-Rf~~~~~l~~~~~~e~~~il~~~~~~~~-----~~~~~~~~~~ia~~~~G~pR~a~~~l~~~-------~~~a~~-- 232 (328)
T PRK00080 168 RD-RFGIVQRLEFYTVEELEKIVKRSARILG-----VEIDEEGALEIARRSRGTPRIANRLLRRV-------RDFAQV-- 232 (328)
T ss_pred HH-hcCeeeecCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHcCCCchHHHHHHHHH-------HHHHHH--
Confidence 11 1125789999999999999998875321 12234678999999999995443333321 111111
Q ss_pred hhccccCCCcchhhHHHHHHhcccCCchhHHHHHh-hhcCCCCCcccchhHHHHHHHHCCCCCCCCCCCHHHHHHHHHH-
Q 005181 249 RMGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLL-YFGLFPESCKVNCARLIRLWIAEGFVPYCKRPTSEQVAEECLN- 326 (710)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l-~la~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~- 326 (710)
.-..... ..........+...+..|++..+..+. .+..|..+ .+..+.+.... ......+.+.++
T Consensus 233 ~~~~~I~-~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----------g~~~~~~~~~~e~ 299 (328)
T PRK00080 233 KGDGVIT-KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-----------GEERDTIEDVYEP 299 (328)
T ss_pred cCCCCCC-HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-----------CCCcchHHHHhhH
Confidence 0000011 011123334455567788888777775 44456544 56655554433 122334556677
Q ss_pred HHhhCCceeee
Q 005181 327 ELIDRSLVQVS 337 (710)
Q Consensus 327 ~L~~~sll~~~ 337 (710)
.|++.+++...
T Consensus 300 ~Li~~~li~~~ 310 (328)
T PRK00080 300 YLIQQGFIQRT 310 (328)
T ss_pred HHHHcCCcccC
Confidence 89999999643
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=8.3e-11 Score=125.37 Aligned_cols=182 Identities=24% Similarity=0.268 Sum_probs=131.1
Q ss_pred hhcccccccEEecCCCCCccCcccccCcc-cceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcE
Q 005181 423 SIANFKLMKVLDLEDAPVDYLPEGVGNLF-NLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRY 501 (710)
Q Consensus 423 ~~~~~~~L~~L~l~~n~~~~l~~~~~~l~-~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 501 (710)
.+..++.++.|++.+|.+..++.....+. +|+.|++++|.+..+|..+..+++|+.|++++|.+..+|...+.+++|+.
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 34455778888888888888877776774 88888888888888877788888888888888888888877668888888
Q ss_pred EEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceE
Q 005181 502 LMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLEL 580 (710)
Q Consensus 502 L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 580 (710)
|++++ |.++..... ...+..|++|.+++| ...++..+..+.++..+.+.+|++... +..++.+++|+.|
T Consensus 191 L~ls~-N~i~~l~~~--------~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L 260 (394)
T COG4886 191 LDLSG-NKISDLPPE--------IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETL 260 (394)
T ss_pred eeccC-CccccCchh--------hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhcccccccee
Confidence 88884 444432211 123335777778777 666676777777777777777776542 4566677778888
Q ss_pred EeecccCCceeEEecCCCCcccEEEeccCCCceeee
Q 005181 581 RLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVI 616 (710)
Q Consensus 581 ~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 616 (710)
++++|.+..... ++.+.+|+.|++++|.+....+
T Consensus 261 ~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 261 DLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccccccc--ccccCccCEEeccCccccccch
Confidence 887777766543 6677777888877776654433
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=9.2e-11 Score=125.05 Aligned_cols=198 Identities=28% Similarity=0.289 Sum_probs=155.4
Q ss_pred cEEecCCCCCccCcccccCcccceEEEeccccccccCcchhccc-CCCEEEcCCCccccccccccccccCcEEEcccccc
Q 005181 431 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLL-SLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNY 509 (710)
Q Consensus 431 ~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~-~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~ 509 (710)
..++++.+.+..-...+..++.+..|++.+|.++.+|.....+. +|+.|++++|.+..+|..+..+++|+.|+++. |.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-ND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-ch
Confidence 46888888874444445566889999999999999998888885 99999999999999988899999999999994 55
Q ss_pred ccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCC
Q 005181 510 TTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDY 588 (710)
Q Consensus 510 ~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 588 (710)
++.... .....++|+.|++++| +..+|........|++|.+++|.+.. .+..+.++.++..|.+.+|.+.
T Consensus 175 l~~l~~--------~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 175 LSDLPK--------LLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred hhhhhh--------hhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceee
Confidence 543331 1214458999999999 88888866667779999999996433 3567788888999988888765
Q ss_pred ceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCcc
Q 005181 589 ELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPI 641 (710)
Q Consensus 589 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 641 (710)
.. +..+..+++|+.|++++|.+..... ++.+.+++.|++++|.+...+|.
T Consensus 246 ~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 246 DL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ec-cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 53 4567788889999999987655433 78889999999999988765543
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.9e-11 Score=121.10 Aligned_cols=88 Identities=20% Similarity=0.126 Sum_probs=42.7
Q ss_pred CCCccEEEEEeeccCCc-cccccccccccceEEeecccCCceeEEe------cCCCCcccEEEeccCCCceeee-ecCCc
Q 005181 550 LENLIRLGLELSGLAEE-PIRVLQASPNLLELRLTGTYDYELFHFE------AGWFPKLQKLLLWDFVAVKSVI-IEKGA 621 (710)
Q Consensus 550 l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~------~~~~~~L~~L~L~~n~~~~~~~-~~~~~ 621 (710)
+..|+.|+|++|++... .....+.++.|+.|+++.|.+.++--.. ...+++|++|++..|++...-. ..+..
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~ 324 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT 324 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhc
Confidence 34455555555554321 1233345555555555555444431111 1345666666666666522110 12344
Q ss_pred CCCccEEEEccCCCCC
Q 005181 622 MPDIRELEIGPCPLLM 637 (710)
Q Consensus 622 l~~L~~L~l~~n~~~~ 637 (710)
+++|+.|.+..|.+..
T Consensus 325 l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhhcccccccc
Confidence 5666666666666543
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.2e-11 Score=120.75 Aligned_cols=202 Identities=21% Similarity=0.144 Sum_probs=120.2
Q ss_pred CcccceEEEeccccccccCc--chhcccCCCEEEcCCCccccccc---cccccccCcEEEccccccccCccCCchhhhhc
Q 005181 449 NLFNLHYLSVKNTEVKIIPK--SIRNLLSLEILDLKNTLVSELPV---EIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKS 523 (710)
Q Consensus 449 ~l~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~ 523 (710)
++.+|+...|.++.+...+. ....|++++.||||.|.+....+ ....+++|+.|+++. |.+....-. .
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s------~ 191 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISS------N 191 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccc------c
Confidence 34444555555444443321 24445555555555554432221 234455555555553 222211111 1
Q ss_pred cCCCCcCccEEEEeec-C--CCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCcee-EEecCCCC
Q 005181 524 LSSPPQYLQRLYLMGN-M--KKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELF-HFEAGWFP 599 (710)
Q Consensus 524 l~~~~~~L~~L~L~~n-~--~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~~~ 599 (710)
.....+.|+.|.|+.| + ..+-..+..+|+|+.|+|..|...........-+..|+.|+|++|.+.... ....+.+|
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 1112346778888877 3 334445577899999999988532223344456789999999988776542 24567899
Q ss_pred cccEEEeccCCCceee-eec-----CCcCCCccEEEEccCCCCCCCc--cccccCCCCcEEEEecCc
Q 005181 600 KLQKLLLWDFVAVKSV-IIE-----KGAMPDIRELEIGPCPLLMEIP--IGIEHLRNLKLLRFDCMV 658 (710)
Q Consensus 600 ~L~~L~L~~n~~~~~~-~~~-----~~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~L~l~~~~ 658 (710)
.|+.|+++.|.+...- |.. ...+++|++|+++.|++.. .+ ..+..+++|+.|.+..|+
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccc
Confidence 9999999998765432 222 2468899999999999842 22 346677788888876554
No 43
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.04 E-value=1.5e-08 Score=110.30 Aligned_cols=303 Identities=11% Similarity=0.113 Sum_probs=162.4
Q ss_pred CCCCCceeecccchhhc---------cCC-CeEEEEEcCCCCCHHHHHHHhhCCccc---ccCcC--cEEEEEeCCCCCH
Q 005181 18 NFPHAGFSGKEDNNQLI---------QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGL---KTHFN--CRAWITVGKEYKK 82 (710)
Q Consensus 18 ~~~~~~~vGre~~~~~i---------~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~---~~~f~--~~~~v~~~~~~~~ 82 (710)
...|+.+.|||+|++.| ..+ ..++.|+|++|.|||++++.+.+.... ....+ .+++|++..-.+.
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 34478899999999998 223 356789999999999999999876311 12222 4678888877788
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhc---CCceEEEEecCCCcc--hHHHHHHhcCC-CCCCcEEE
Q 005181 83 NDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLK---DKSYMVVFDDVWKID--FWGDVEYALLD-SKKCGRII 156 (710)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~LlvlDdv~~~~--~~~~~~~~l~~-~~~~~~il 156 (710)
..++..|..++.... ........++...+...+. +...+||||+++... .-+.+...+.+ ...+++++
T Consensus 831 ~sIYqvI~qqL~g~~------P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLi 904 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKK------PPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLV 904 (1164)
T ss_pred HHHHHHHHHHHcCCC------CCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEE
Confidence 888888888874322 1122233344555554442 224689999998654 11122222221 12344444
Q ss_pred E--EcCchhhh----hhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHH
Q 005181 157 V--TTRHMNVA----KYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVG 230 (710)
Q Consensus 157 v--TtR~~~~~----~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 230 (710)
+ +|.+.+.. ..+...-....+..+|++.++..+++..++.... ..-.+..++-.|+.++...|-.-.||.++-
T Consensus 905 LIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~-gVLdDdAIELIArkVAq~SGDARKALDILR 983 (1164)
T PTZ00112 905 LIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK-EIIDHTAIQLCARKVANVSGDIRKALQICR 983 (1164)
T ss_pred EEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 4 34322211 1111111113466799999999999999985421 111122233333434433444456665555
Q ss_pred hhhcCCC---CCHHHHHHHHHhhccccCCCcchhhHHHHHHhcccCCchhHHHHHhhhcCCCCC---cccchhHHHHH--
Q 005181 231 GLLSTKN---MVVSEWKKLFDRMGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGLFPES---CKVNCARLIRL-- 302 (710)
Q Consensus 231 ~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~la~f~~~---~~~~~~~l~~~-- 302 (710)
....... ...+..+.+..++ ....+...+..|+.+.|-.++.++..... ..++...+...
T Consensus 984 rAgEikegskVT~eHVrkAleei------------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk 1051 (1164)
T PTZ00112 984 KAFENKRGQKIVPRDITEATNQL------------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYK 1051 (1164)
T ss_pred HHHhhcCCCccCHHHHHHHHHHH------------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHH
Confidence 4443211 1122222222221 11123345567888888777655543221 13544444332
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeeec
Q 005181 303 WIAEGFVPYCKRPTSEQVAEECLNELIDRSLVQVSER 339 (710)
Q Consensus 303 w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~ 339 (710)
-+|+.....-......+.+.+++.+|...|+|-.++.
T Consensus 1052 ~Lce~~Gk~iGv~plTqRV~d~L~eL~~LGIIl~ep~ 1088 (1164)
T PTZ00112 1052 VLVETSGKYIGMCSNNELFKIMLDKLVKMGILLIRPY 1088 (1164)
T ss_pred HHHHhhhhhcCCCCcHHHHHHHHHHHHhcCeEEecCC
Confidence 2343111100111112268888999999998877653
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=1.5e-10 Score=105.09 Aligned_cols=128 Identities=24% Similarity=0.309 Sum_probs=44.0
Q ss_pred cccccccEEecCCCCCccCccccc-CcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccc-cccccCcEE
Q 005181 425 ANFKLMKVLDLEDAPVDYLPEGVG-NLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEI-RNLKKLRYL 502 (710)
Q Consensus 425 ~~~~~L~~L~l~~n~~~~l~~~~~-~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~L~~L 502 (710)
.+...+++|+|.+|.|+.+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|.++.++..+ ..+++|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34456777888888777663 344 4677888888888887764 5777788888888888877776544 357777777
Q ss_pred EccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCcc---ccccccccccce
Q 005181 503 MVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEP---IRVLQASPNLLE 579 (710)
Q Consensus 503 ~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~ 579 (710)
+++ +|.+.... .+ ..+..+++|+.|+|.+|+++... ...+..+|+|+.
T Consensus 94 ~L~-~N~I~~l~---------------------------~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 94 YLS-NNKISDLN---------------------------EL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV 144 (175)
T ss_dssp E-T-TS---SCC---------------------------CC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred ECc-CCcCCChH---------------------------Hh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence 777 34443211 11 23466788888888888775432 233456777777
Q ss_pred EEee
Q 005181 580 LRLT 583 (710)
Q Consensus 580 L~L~ 583 (710)
||-.
T Consensus 145 LD~~ 148 (175)
T PF14580_consen 145 LDGQ 148 (175)
T ss_dssp ETTE
T ss_pred eCCE
Confidence 7643
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=1.7e-11 Score=125.20 Aligned_cols=197 Identities=21% Similarity=0.200 Sum_probs=156.6
Q ss_pred EEecCCCCCccCcccc--cCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEcccccc
Q 005181 432 VLDLEDAPVDYLPEGV--GNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNY 509 (710)
Q Consensus 432 ~L~l~~n~~~~l~~~~--~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~ 509 (710)
.|.|++-.+..+|..- ..+..-...+|+.|++..+|..+..+..|+.|.|+.|.+..+|..++++..|.+|+|+. |.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-Nq 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQ 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-ch
Confidence 5677777777776332 34555677899999999999999999999999999999999999999999999999994 55
Q ss_pred ccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCC
Q 005181 510 TTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDY 588 (710)
Q Consensus 510 ~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 588 (710)
++.... .+..+ -|+.|-+++| +..+|..++..+.|..|+.+.|.+.. .|..++.+.+|+.|.++.|++.
T Consensus 133 lS~lp~-------~lC~l--pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 133 LSHLPD-------GLCDL--PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred hhcCCh-------hhhcC--cceeEEEecCccccCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh
Confidence 543322 22233 4888889988 88899988888999999999999866 4677888999999999988877
Q ss_pred ceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCcccc
Q 005181 589 ELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGI 643 (710)
Q Consensus 589 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 643 (710)
..++ .... -.|..||+++|++ ..+|..|..|..|++|-|.+|++. +.|..+
T Consensus 203 ~lp~-El~~-LpLi~lDfScNki-s~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 203 DLPE-ELCS-LPLIRLDFSCNKI-SYLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred hCCH-HHhC-CceeeeecccCce-eecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 6544 3343 3588899988874 568888999999999999999975 555544
No 46
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=8e-08 Score=98.82 Aligned_cols=299 Identities=16% Similarity=0.160 Sum_probs=174.8
Q ss_pred ccCCCCCceeecccchhhc---------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHH
Q 005181 16 IFNFPHAGFSGKEDNNQLI---------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLL 86 (710)
Q Consensus 16 ~~~~~~~~~vGre~~~~~i---------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (710)
.++..|+.+.+||.+++.+ .+.+..+.|+|+.|+|||+.++.++++......-..+++|+|....+.-+++
T Consensus 11 ~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 11 LEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred CCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHH
Confidence 3444567799999999988 4445569999999999999999999884322222237999999999999999
Q ss_pred HHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhc--CCceEEEEecCCCcchH--HHHHHhcCCCCC-CcEEEE--Ec
Q 005181 87 RTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLK--DKSYMVVFDDVWKIDFW--GDVEYALLDSKK-CGRIIV--TT 159 (710)
Q Consensus 87 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~LlvlDdv~~~~~~--~~~~~~l~~~~~-~~~ilv--Tt 159 (710)
..++..+... ...++...+..+.+.+.+. ++.+++|||+++....- +.+...+..... .++|++ .+
T Consensus 91 ~~i~~~~~~~-------p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~ 163 (366)
T COG1474 91 SKILNKLGKV-------PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVS 163 (366)
T ss_pred HHHHHHcCCC-------CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEe
Confidence 9999998722 1123344567777777765 47899999999876422 233333333222 233333 33
Q ss_pred Cchhhhhhcc----CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC-chHHHHHHhhh-
Q 005181 160 RHMNVAKYCK----SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL-PLAIVAVGGLL- 233 (710)
Q Consensus 160 R~~~~~~~~~----~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~l- 233 (710)
-+..+..... ..-....+..+|.+.+|-..++..++.....+.......-+.+..++...+|- -.|+.++....
T Consensus 164 n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~e 243 (366)
T COG1474 164 NDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGE 243 (366)
T ss_pred ccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 3332222221 11112347899999999999999998765544444455555555555555542 23332222211
Q ss_pred -cC----CCCCHHHHHHHHHhhccccCCCcchhhHHHHHHhcccCCchhHHHHHhhhcCCCCCcccchhHHHH--HHHHC
Q 005181 234 -ST----KNMVVSEWKKLFDRMGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGLFPESCKVNCARLIR--LWIAE 306 (710)
Q Consensus 234 -~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~la~f~~~~~~~~~~l~~--~w~~~ 306 (710)
+. ...+.+.-..+.. ..-..........|+.+.+..+..++... ..+...++-. .++++
T Consensus 244 iAe~~~~~~v~~~~v~~a~~------------~~~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~ 309 (366)
T COG1474 244 IAEREGSRKVSEDHVREAQE------------EIERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCE 309 (366)
T ss_pred HHHhhCCCCcCHHHHHHHHH------------HhhHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHh
Confidence 11 0001111111111 11122344457888888877766555443 2232223222 23443
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCceeeeecCC
Q 005181 307 GFVPYCKRPTSEQVAEECLNELIDRSLVQVSERDI 341 (710)
Q Consensus 307 g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~ 341 (710)
.+.. ......+++.+|...+++.....+.
T Consensus 310 ~~~~------~~~~~~~ii~~L~~lgiv~~~~~~~ 338 (366)
T COG1474 310 RLRT------SQRRFSDIISELEGLGIVSASLISR 338 (366)
T ss_pred hhCc------hHHHHHHHHHHHHhcCeEEeeeccC
Confidence 2221 2344667888888888887654443
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=1.8e-10 Score=108.60 Aligned_cols=130 Identities=24% Similarity=0.297 Sum_probs=76.5
Q ss_pred cccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccc
Q 005181 427 FKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYR 506 (710)
Q Consensus 427 ~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~ 506 (710)
.+.|++|||++|.|+.+..++.-.|.++.|++++|.|..+. .+..+++|+.||||+|.+..+...-.++-|.+.|+|++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 34566667777766666666666666777777777666553 26666666677776666666655444555555555553
Q ss_pred cccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCc-cccccccccccceEEeecc
Q 005181 507 YNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEE-PIRVLQASPNLLELRLTGT 585 (710)
Q Consensus 507 ~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n 585 (710)
|. ++++. .+..+-+|..|++++|++... ....++++|-|++|.|.+|
T Consensus 362 -N~------------------------------iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 362 -NK------------------------------IETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred -hh------------------------------Hhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 22 22222 345556666666666665432 2345566666666666666
Q ss_pred cCCc
Q 005181 586 YDYE 589 (710)
Q Consensus 586 ~~~~ 589 (710)
.+..
T Consensus 410 Pl~~ 413 (490)
T KOG1259|consen 410 PLAG 413 (490)
T ss_pred Cccc
Confidence 5544
No 48
>PF13173 AAA_14: AAA domain
Probab=98.86 E-value=9.4e-09 Score=89.97 Aligned_cols=122 Identities=19% Similarity=0.202 Sum_probs=84.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
.++++|.|+-|+||||++++++++.. ....++|+++........... +..+.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~------------------------~~~~~~ 54 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP------------------------DLLEYF 54 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh------------------------hhHHHH
Confidence 47899999999999999999987632 335678888766522110000 023334
Q ss_pred HHHhcCCceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCchhhhhh---ccCCCCcceEEccCCCchh
Q 005181 118 RDHLKDKSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHMNVAKY---CKSSSSVHVHELETLPPNE 186 (710)
Q Consensus 118 ~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~~~~~~---~~~~~~~~~~~l~~l~~~e 186 (710)
.+....++.++++|++....+|......+.+..+..+|++|+........ ....+....+++.||+-.|
T Consensus 55 ~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 55 LELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 44444477899999999999898888888776667799999988655532 1223334578999998776
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.86 E-value=6.2e-11 Score=114.45 Aligned_cols=240 Identities=18% Similarity=0.133 Sum_probs=164.2
Q ss_pred ccccCcccceEEEecccccc-----ccCcchhcccCCCEEEcCCCcc----ccccc-------cccccccCcEEEccccc
Q 005181 445 EGVGNLFNLHYLSVKNTEVK-----IIPKSIRNLLSLEILDLKNTLV----SELPV-------EIRNLKKLRYLMVYRYN 508 (710)
Q Consensus 445 ~~~~~l~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~----~~~~~-------~~~~l~~L~~L~l~~~n 508 (710)
..+..+..++.++|++|.+. .+.+.+.+.++|+..++++-.. ..+|+ ++-.+++|++|+||. |
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD-N 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD-N 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc-c
Confidence 34556788999999999987 3455577888999999986543 34454 345677999999995 4
Q ss_pred cccCccCCchhhhhccCCCCcCccEEEEeec-CCCCC--------------ccccCCCCccEEEEEeeccCCcc----cc
Q 005181 509 YTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLP--------------DWIFKLENLIRLGLELSGLAEEP----IR 569 (710)
Q Consensus 509 ~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip--------------~~~~~l~~L~~L~L~~n~l~~~~----~~ 569 (710)
-+.-..++ -+..+...+..|++|.|++| ++..- .-..+-+.|+.+..++|.+.... ..
T Consensus 103 A~G~~g~~---~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 103 AFGPKGIR---GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred ccCccchH---HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 44322222 24455555779999999998 54321 12345688999999999885533 34
Q ss_pred ccccccccceEEeecccCCcee----EEecCCCCcccEEEeccCCCcee----eeecCCcCCCccEEEEccCCCCCCCc-
Q 005181 570 VLQASPNLLELRLTGTYDYELF----HFEAGWFPKLQKLLLWDFVAVKS----VIIEKGAMPDIRELEIGPCPLLMEIP- 640 (710)
Q Consensus 570 ~l~~l~~L~~L~L~~n~~~~~~----~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p- 640 (710)
.|...+.|+.+.++.|.+.... ...+..+++|+.|+|..|.+... +...+..++.|+.|++++|.+...-.
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 5667789999999988765432 23457899999999999987542 22345677889999999998765322
Q ss_pred ---ccc-ccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhc
Q 005181 641 ---IGI-EHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILS 699 (710)
Q Consensus 641 ---~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~ 699 (710)
..+ ...++|+.|.+.+|........ .+-..+.. .+.|..|+|++|.+.
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~----------~la~~~~e-k~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAAL----------ALAACMAE-KPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHH----------HHHHHHhc-chhhHHhcCCccccc
Confidence 222 3578999999997754222111 12222333 488999999999993
No 50
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.81 E-value=1.4e-07 Score=108.14 Aligned_cols=315 Identities=14% Similarity=0.177 Sum_probs=177.3
Q ss_pred ceeecccchhhc--------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeC---CCCC---HHHHHHH
Q 005181 23 GFSGKEDNNQLI--------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVG---KEYK---KNDLLRT 88 (710)
Q Consensus 23 ~~vGre~~~~~i--------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~---~~~~---~~~~~~~ 88 (710)
.++||+.+++.| .+...++.|.|.+|+|||++++++... +.+.+...+--.++ .... ..+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 378999999988 566679999999999999999999876 33332222211221 1111 1233344
Q ss_pred HHHHHhhhc---------------------------------C-CCCCccccchhHH-----HHHHHHHHHhc-CCceEE
Q 005181 89 ILKEFHRVA---------------------------------N-QPAPVEIHDMEEM-----ELITTLRDHLK-DKSYMV 128 (710)
Q Consensus 89 i~~~l~~~~---------------------------------~-~~~~~~~~~~~~~-----~~~~~~~~~l~-~~~~Ll 128 (710)
+..++.... + ++........... .....+..... .++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 443331100 0 0000000000000 12223333333 458999
Q ss_pred EEecCCCcc--hHHHHHHhcCCCCC----CcEE--EEEcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCC
Q 005181 129 VFDDVWKID--FWGDVEYALLDSKK----CGRI--IVTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSS 200 (710)
Q Consensus 129 vlDdv~~~~--~~~~~~~~l~~~~~----~~~i--lvTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~ 200 (710)
|+||+...+ .+.-+......... ...+ +.|.+... ............+.+.||+..+...+........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~-~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~-- 235 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTL-GEILKSATNITTITLAPLSRADTNQLVAATLGCT-- 235 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchh-hHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc--
Confidence 999997665 22222211111110 1122 23333331 1111112233689999999999999998887432
Q ss_pred CCCCchhHHHHHHHHHHHhCCCchHHHHHHhhhcCCCC-----CHHHHHHHHHhhccccCCCcchhhHHHHHHhcccCCc
Q 005181 201 GGSCPSELRELSRDILAKCGGLPLAIVAVGGLLSTKNM-----VVSEWKKLFDRMGSILGSDPHLKDCNRVLSEGYHDLP 275 (710)
Q Consensus 201 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~ 275 (710)
..........|+++..|+|+.+..+-+.+-..+. ....|+.-...+... +..+.+...+..-++.|+
T Consensus 236 ----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~----~~~~~vv~~l~~rl~kL~ 307 (849)
T COG3899 236 ----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL----ATTDAVVEFLAARLQKLP 307 (849)
T ss_pred ----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc----hhhHHHHHHHHHHHhcCC
Confidence 1223467899999999999999888887765421 223344333332221 122345556888899999
Q ss_pred hhHHHHHhhhcCCCCCcccchhHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeeecCCCCC-Ee---EEEEc
Q 005181 276 HHLKSCLLYFGLFPESCKVNCARLIRLWIAEGFVPYCKRPTSEQVAEECLNELIDRSLVQVSERDISGR-AR---ICQVH 351 (710)
Q Consensus 276 ~~~~~~~l~la~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~-~~---~~~~h 351 (710)
...|+.+-..|++-. .|+.+.+...+. ......+...++.|....++.....-..+. .. +--.|
T Consensus 308 ~~t~~Vl~~AA~iG~--~F~l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 308 GTTREVLKAAACIGN--RFDLDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHHhCc--cCCHHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 999999999999954 466666655542 134556777777787777665321111111 11 12578
Q ss_pred HhHHHHHHHhh
Q 005181 352 DLMHEIVVRKT 362 (710)
Q Consensus 352 ~li~~~~~~~~ 362 (710)
+++++.+....
T Consensus 376 ~~vqqaaY~~i 386 (849)
T COG3899 376 DRVQQAAYNLI 386 (849)
T ss_pred HHHHHHHhccC
Confidence 88888776443
No 51
>PRK06893 DNA replication initiation factor; Validated
Probab=98.81 E-value=2.3e-08 Score=96.99 Aligned_cols=149 Identities=12% Similarity=0.173 Sum_probs=90.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
....+.|+|++|+|||+|+.++++.. ......+.|++...... . ...
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~~~---~----------------------------~~~ 84 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKSQY---F----------------------------SPA 84 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHhhh---h----------------------------hHH
Confidence 34678999999999999999999873 23344667877532100 0 001
Q ss_pred HHHHhcCCceEEEEecCCCc---chHH-HHHHhcCCC-CCCcEEEE-EcCc---------hhhhhhccCCCCcceEEccC
Q 005181 117 LRDHLKDKSYMVVFDDVWKI---DFWG-DVEYALLDS-KKCGRIIV-TTRH---------MNVAKYCKSSSSVHVHELET 181 (710)
Q Consensus 117 ~~~~l~~~~~LlvlDdv~~~---~~~~-~~~~~l~~~-~~~~~ilv-TtR~---------~~~~~~~~~~~~~~~~~l~~ 181 (710)
+.+.+. +.-+|++||++.. .+|+ .+...+... ..|..+++ |+.. +++...+... .++++++
T Consensus 85 ~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g---~~~~l~~ 160 (229)
T PRK06893 85 VLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG---EIYQLND 160 (229)
T ss_pred HHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC---CeeeCCC
Confidence 111222 2348999999874 2343 233333322 23445544 4543 2333333332 6889999
Q ss_pred CCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHH
Q 005181 182 LPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIV 227 (710)
Q Consensus 182 l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 227 (710)
+++++.++++.+.+.... ..-.++...-|++.+.|..-.+.
T Consensus 161 pd~e~~~~iL~~~a~~~~-----l~l~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 161 LTDEQKIIVLQRNAYQRG-----IELSDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred CCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhccCCHHHHH
Confidence 999999999999885331 22234667788888887765553
No 52
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.78 E-value=7.4e-08 Score=102.37 Aligned_cols=169 Identities=17% Similarity=0.124 Sum_probs=97.6
Q ss_pred Cceeecccchhh---c-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHH
Q 005181 22 AGFSGKEDNNQL---I-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 22 ~~~vGre~~~~~---i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (710)
+++||++..++. + ......+.|+|++|+||||+|+.+++. ....| +.++.. ......++.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~---~~l~a~--~~~~~~ir~----- 79 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGA--TDAPF---EALSAV--TSGVKDLRE----- 79 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEecc--cccHHHHHH-----
Confidence 457777766544 3 555668889999999999999999886 33222 222221 111111111
Q ss_pred hhhcCCCCCccccchhHHHHHHHHHHH-hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE--EcCchhhhhhc
Q 005181 94 HRVANQPAPVEIHDMEEMELITTLRDH-LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV--TTRHMNVAKYC 168 (710)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv--TtR~~~~~~~~ 168 (710)
+.+..... ..+++.++++|+++... ..+.+...+. .+..+++ ||.+....-..
T Consensus 80 -------------------ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 80 -------------------VIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred -------------------HHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 12222211 24578899999998764 3333333332 2444444 44443211111
Q ss_pred cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 169 KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 169 ~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
...++..++.+++++.++...++.+.......+. ..-..+..+.+++.++|.+..+
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~--i~i~~~al~~l~~~s~Gd~R~a 193 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL--VELDDEALDALARLANGDARRA 193 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHhCCCCHHHH
Confidence 1112226899999999999999998764311011 1223466788999999998655
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.2e-10 Score=109.79 Aligned_cols=176 Identities=20% Similarity=0.179 Sum_probs=113.4
Q ss_pred ccccEEecCCCCCc--cCcccccCcccceEEEecccccc-ccCcchhcccCCCEEEcCCC-cccccc--ccccccccCcE
Q 005181 428 KLMKVLDLEDAPVD--YLPEGVGNLFNLHYLSVKNTEVK-IIPKSIRNLLSLEILDLKNT-LVSELP--VEIRNLKKLRY 501 (710)
Q Consensus 428 ~~L~~L~l~~n~~~--~l~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n-~~~~~~--~~~~~l~~L~~ 501 (710)
+.|+.|||++..++ .+-.-++.|.+|+.|++.++.+. .+...+.+-.+|+.|+|+.+ .+++.. -.+.+++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35778888888776 44455667888888888888887 56566777788888888844 344332 23677888888
Q ss_pred EEccccccccCccCCchhhhhccCCCCcCccEEEEeecC-----CCCCccccCCCCccEEEEEeec-cCCcccccccccc
Q 005181 502 LMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNM-----KKLPDWIFKLENLIRLGLELSG-LAEEPIRVLQASP 575 (710)
Q Consensus 502 L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~-----~~ip~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~ 575 (710)
|+++.|..++.... ..+....++|..|+|+|+. ..+.--...+++|..|+|++|. ++......|-+++
T Consensus 265 LNlsWc~l~~~~Vt------v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVT------VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred cCchHhhccchhhh------HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 88887654443211 1223344578888888872 1222223678888888888876 4444445566777
Q ss_pred ccceEEeecccCCc-eeEEecCCCCcccEEEeccC
Q 005181 576 NLLELRLTGTYDYE-LFHFEAGWFPKLQKLLLWDF 609 (710)
Q Consensus 576 ~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~L~~n 609 (710)
.|++|.++.|+... .....+...|+|.+|++.+|
T Consensus 339 ~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 339 YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 88888888775421 12234556677777776665
No 54
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=1.1e-08 Score=93.01 Aligned_cols=114 Identities=24% Similarity=0.324 Sum_probs=38.2
Q ss_pred ccCcccccccCCCCceeEEEeecCCCCCcchhhhhhc-ccccccEEecCCCCCccCcccccCcccceEEEeccccccccC
Q 005181 389 RSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIA-NFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIP 467 (710)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp 467 (710)
.+.+...+....+.+++.|.+.++.... . ..+. .+.+|+.|+|++|.++.++ .+..+++|+.|++++|.|+.++
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~---I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQIST---I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C
T ss_pred cccccccccccccccccccccccccccc---c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc
Confidence 3344444455556677778777776521 1 1233 5678889999999988875 4778889999999999999887
Q ss_pred cch-hcccCCCEEEcCCCccccccc--cccccccCcEEEcccc
Q 005181 468 KSI-RNLLSLEILDLKNTLVSELPV--EIRNLKKLRYLMVYRY 507 (710)
Q Consensus 468 ~~~-~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~ 507 (710)
+.+ ..+++|++|++++|.+..+.. .+..+++|+.|++.+|
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 665 468899999999988866643 3667888888888753
No 55
>PLN03150 hypothetical protein; Provisional
Probab=98.71 E-value=9.7e-09 Score=114.60 Aligned_cols=107 Identities=18% Similarity=0.038 Sum_probs=62.1
Q ss_pred ccEEEEeec--CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEecc
Q 005181 531 LQRLYLMGN--MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWD 608 (710)
Q Consensus 531 L~~L~L~~n--~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~ 608 (710)
++.|+|++| .+.+|..+..+++|+.|+|++|.+++..|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555566655 245555566666666666666666655555566666666666666666555555556666666666666
Q ss_pred CCCceeeeecCCcC-CCccEEEEccCCCCC
Q 005181 609 FVAVKSVIIEKGAM-PDIRELEIGPCPLLM 637 (710)
Q Consensus 609 n~~~~~~~~~~~~l-~~L~~L~l~~n~~~~ 637 (710)
|.+.+.+|..+... .++..+++.+|....
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 66555555554432 344555566555443
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=1e-08 Score=116.75 Aligned_cols=156 Identities=26% Similarity=0.237 Sum_probs=110.9
Q ss_pred ccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCC--CccCcc-cccCcccceEEEecccc-ccccCcch
Q 005181 395 ALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAP--VDYLPE-GVGNLFNLHYLSVKNTE-VKIIPKSI 470 (710)
Q Consensus 395 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~l~~-~~~~l~~L~~L~l~~n~-i~~lp~~~ 470 (710)
.+........|...+.++..... ..-..++.|++|-+..|. +..++. .|..++.|++|||++|. +..+|..+
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~----~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHI----AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred cccccchhheeEEEEeccchhhc----cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 33555667888888887765211 112345579999999996 666654 47789999999999765 66999999
Q ss_pred hcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeecC----CCCCcc
Q 005181 471 RNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNM----KKLPDW 546 (710)
Q Consensus 471 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~----~~ip~~ 546 (710)
++|-+|++|+++++.+..+|..+.++++|.+|++..+..+... + ......++|++|.+.... ...-..
T Consensus 592 ~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~------~i~~~L~~Lr~L~l~~s~~~~~~~~l~e 663 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI--P------GILLELQSLRVLRLPRSALSNDKLLLKE 663 (889)
T ss_pred hhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc--c------chhhhcccccEEEeeccccccchhhHHh
Confidence 9999999999999999999999999999999999864433222 1 233334588888876642 112223
Q ss_pred ccCCCCccEEEEEeec
Q 005181 547 IFKLENLIRLGLELSG 562 (710)
Q Consensus 547 ~~~l~~L~~L~L~~n~ 562 (710)
+.++.+|+.+......
T Consensus 664 l~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 664 LENLEHLENLSITISS 679 (889)
T ss_pred hhcccchhhheeecch
Confidence 4566666666664443
No 57
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.68 E-value=3.4e-08 Score=87.23 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=77.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccc---cCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLK---THFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEME 112 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~---~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 112 (710)
.+.+++.|+|++|+|||+++.++++..... ..-..++|+.+....+...+...++..+...... ..+..+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 74 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------RQTSDE 74 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------TS-HHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------cCCHHH
Confidence 356789999999999999999998862110 0034678999888888999999999999876432 234456
Q ss_pred HHHHHHHHhcCCc-eEEEEecCCCc-c--hHHHHHHhcCCCCCCcEEEEEcCc
Q 005181 113 LITTLRDHLKDKS-YMVVFDDVWKI-D--FWGDVEYALLDSKKCGRIIVTTRH 161 (710)
Q Consensus 113 ~~~~~~~~l~~~~-~LlvlDdv~~~-~--~~~~~~~~l~~~~~~~~ilvTtR~ 161 (710)
+.+.+.+.+...+ .+||+|+++.. . .++.+.. +.+ ..+.++|+..+.
T Consensus 75 l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 75 LRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 7788888777654 59999999876 3 3333433 333 555577776665
No 58
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.66 E-value=9.1e-08 Score=95.82 Aligned_cols=294 Identities=17% Similarity=0.136 Sum_probs=181.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcC-cEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFN-CRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMEL 113 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~-~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 113 (710)
....|-+.++|+|||||||++-+++. ....|. ++.++.+..-.++..+.-.+...+...... -+..
T Consensus 11 ~~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~----------g~~~ 77 (414)
T COG3903 11 LTALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP----------GDSA 77 (414)
T ss_pred hhhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc----------chHH
Confidence 34468899999999999999999877 345674 566666665556666666666656554311 1133
Q ss_pred HHHHHHHhcCCceEEEEecCCCcc-hHHHHHHhcCCCCCCcEEEEEcCchhhhhhccCCCCcceEEccCCCch-hHHHHH
Q 005181 114 ITTLRDHLKDKSYMVVFDDVWKID-FWGDVEYALLDSKKCGRIIVTTRHMNVAKYCKSSSSVHVHELETLPPN-EAWKLF 191 (710)
Q Consensus 114 ~~~~~~~l~~~~~LlvlDdv~~~~-~~~~~~~~l~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~l~~l~~~-ea~~l~ 191 (710)
...+.....++|.++|+||..+.. .-......+......-.++.|+|+.-... .. .++.+++++.. ++.++|
T Consensus 78 ~~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~---ge---~~~~~~~L~~~d~a~~lf 151 (414)
T COG3903 78 VDTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA---GE---VHRRVPSLSLFDEAIELF 151 (414)
T ss_pred HHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc---cc---ccccCCccccCCchhHHH
Confidence 555667778999999999997654 22223333444444447888999864322 12 57778888876 688888
Q ss_pred HHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhhcCCCCCHHHHHHHHH----hhccccCCCcc--hhhHHH
Q 005181 192 CRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLLSTKNMVVSEWKKLFD----RMGSILGSDPH--LKDCNR 265 (710)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~ 265 (710)
...+......--..........+|.+..+|.|++++.+++..+.-. ..+....+. .+... ..... ..+...
T Consensus 152 ~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~--~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~a 228 (414)
T COG3903 152 VCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS--PDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRA 228 (414)
T ss_pred HHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC--HHHHHHHHhhHHHHHhcc-cccchhHHHhccc
Confidence 7776433211112233556788999999999999999999886642 333333332 22222 11111 145667
Q ss_pred HHHhcccCCchhHHHHHhhhcCCCCCcccchhHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeeecCCCCCE
Q 005181 266 VLSEGYHDLPHHLKSCLLYFGLFPESCKVNCARLIRLWIAEGFVPYCKRPTSEQVAEECLNELIDRSLVQVSERDISGRA 345 (710)
Q Consensus 266 ~l~~s~~~L~~~~~~~~l~la~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~ 345 (710)
.+.+||.-|..-++..|-.++.|..++..... .|.+-|-. .......+...+-.+++++++.-......
T Consensus 229 sl~ws~~lLtgwe~~~~~rLa~~~g~f~~~l~----~~~a~g~~----~~~~~y~~~~a~~ll~~kslv~a~~~~~~--- 297 (414)
T COG3903 229 SLDWSYALLTGWERALFGRLAVFVGGFDLGLA----LAVAAGAD----VDVPRYLVLLALTLLVDKSLVVALDLLGR--- 297 (414)
T ss_pred hhhhhhHhhhhHHHHHhcchhhhhhhhcccHH----HHHhcCCc----cccchHHHHHHHHHHhhccchhhhhhhhH---
Confidence 78999999999999999999999877655422 22222111 11123345556677888887754332111
Q ss_pred eEEEEcHhHHHHHHHh
Q 005181 346 RICQVHDLMHEIVVRK 361 (710)
Q Consensus 346 ~~~~~h~li~~~~~~~ 361 (710)
..|+.-+-.+.|+..+
T Consensus 298 a~~Rl~eT~r~Yalae 313 (414)
T COG3903 298 ARYRLLETGRRYALAE 313 (414)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2234444455555444
No 59
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.65 E-value=2.2e-07 Score=90.75 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=92.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
....+.+.|+|++|+|||++|+++++.. ......++|+++..-... . .+
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~~------~---------------------~~-- 83 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQA------D---------------------PE-- 83 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHHh------H---------------------HH--
Confidence 4556789999999999999999998873 233345677765432110 0 00
Q ss_pred HHHHHHhcCCceEEEEecCCCcc---h-HHHHHHhcCC-CCCCcEEEEEcCchhhh-----hhcc-CCCCcceEEccCCC
Q 005181 115 TTLRDHLKDKSYMVVFDDVWKID---F-WGDVEYALLD-SKKCGRIIVTTRHMNVA-----KYCK-SSSSVHVHELETLP 183 (710)
Q Consensus 115 ~~~~~~l~~~~~LlvlDdv~~~~---~-~~~~~~~l~~-~~~~~~ilvTtR~~~~~-----~~~~-~~~~~~~~~l~~l~ 183 (710)
+.+.+++. -+||+||++... . .+.+...+.. ...+..+|+|++..... .... .......+++++++
T Consensus 84 --~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~ 160 (226)
T TIGR03420 84 --VLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLS 160 (226)
T ss_pred --HHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCC
Confidence 11112222 389999998654 2 2334333322 12334788888753211 0000 01112578999999
Q ss_pred chhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHH
Q 005181 184 PNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAV 229 (710)
Q Consensus 184 ~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 229 (710)
+++...++...+... + ..-..+..+.|++.+.|+|..+.-+
T Consensus 161 ~~e~~~~l~~~~~~~--~---~~~~~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 161 DEEKIAALQSRAARR--G---LQLPDEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred HHHHHHHHHHHHHHc--C---CCCCHHHHHHHHHhccCCHHHHHHH
Confidence 999999988765321 1 1223466788888899988776443
No 60
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.65 E-value=2.5e-07 Score=96.39 Aligned_cols=191 Identities=11% Similarity=0.023 Sum_probs=105.0
Q ss_pred Cceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCc-CcEEEEEeCCCCCHHHHHHHHHHHHhh
Q 005181 22 AGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHF-NCRAWITVGKEYKKNDLLRTILKEFHR 95 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (710)
++++|++..++.+ .+..+.+.|+|++|+||||+|+.+++.... ..+ ...++++++.... .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~------~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFD------QGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhh------cchhhhhc
Confidence 6789999988887 444457889999999999999999876321 111 2345555432110 00000000
Q ss_pred hcCC---CCCccccchhHHHHHHHH-HHH---h--cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-h
Q 005181 96 VANQ---PAPVEIHDMEEMELITTL-RDH---L--KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-N 163 (710)
Q Consensus 96 ~~~~---~~~~~~~~~~~~~~~~~~-~~~---l--~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~ 163 (710)
.... ............+....+ +.. . .+.+-++|+||++... ....+...+......+++|+|+... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 0000 000000000001112211 111 1 1334589999998764 2334554554445556777776543 2
Q ss_pred hhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 164 VAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
+..... +....+++.+++.++...++.+.+.... ..-..+.++.+++.++|.+-.+
T Consensus 168 ~~~~L~--sr~~~v~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 168 LIPPIR--SRCLPLFFRAPTDDELVDVLESIAEAEG-----VDYDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred Cchhhc--CCceEEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHH
Confidence 222222 2236789999999999999988764321 1123567888999998886554
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=7.7e-09 Score=97.74 Aligned_cols=219 Identities=14% Similarity=0.019 Sum_probs=131.6
Q ss_pred EEEeecCCCCCcchhhhhhcccccccEEecCCCCCcc---CcccccCcccceEEEeccccccccCcch-hcccCCCEEEc
Q 005181 406 SVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDY---LPEGVGNLFNLHYLSVKNTEVKIIPKSI-RNLLSLEILDL 481 (710)
Q Consensus 406 ~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---l~~~~~~l~~L~~L~l~~n~i~~lp~~~-~~l~~L~~L~l 481 (710)
-+.+.++...........-..++.++.|||.+|.|+. +..-+.+||+|++|+++.|++...-..+ ..+.+|+.|-|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 4455555543344444555678889999999999874 4445678999999999999887333333 35678888888
Q ss_pred CCCcc--ccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeecC----CCCCccccCCCCccE
Q 005181 482 KNTLV--SELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNM----KKLPDWIFKLENLIR 555 (710)
Q Consensus 482 ~~n~~--~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~----~~ip~~~~~l~~L~~ 555 (710)
.+..+ +.....+..+|.+++|.++.|+. ....... .......+.+.+|.+..|. ..+-.-..-+|++..
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~-rq~n~Dd----~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSL-RQLNLDD----NCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchh-hhhcccc----ccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 87654 44555567788888888885431 1111000 0111122345555555551 122222244677777
Q ss_pred EEEEeeccCC-ccccccccccccceEEeecccCCce-eEEecCCCCcccEEEeccCCCceeeee------cCCcCCCccE
Q 005181 556 LGLELSGLAE-EPIRVLQASPNLLELRLTGTYDYEL-FHFEAGWFPKLQKLLLWDFVAVKSVII------EKGAMPDIRE 627 (710)
Q Consensus 556 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~------~~~~l~~L~~ 627 (710)
+-+..|++.. .....+..+|.+..|+|+.|.+.+. ....+.+++.|..|.+++|++...+-. .++.+++++.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 7787777643 2344555666777777776666442 223456778888888888776554321 2356666666
Q ss_pred EE
Q 005181 628 LE 629 (710)
Q Consensus 628 L~ 629 (710)
|+
T Consensus 284 LN 285 (418)
T KOG2982|consen 284 LN 285 (418)
T ss_pred ec
Confidence 64
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=3.9e-09 Score=112.59 Aligned_cols=220 Identities=20% Similarity=0.170 Sum_probs=106.1
Q ss_pred hcccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEE
Q 005181 424 IANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLM 503 (710)
Q Consensus 424 ~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~ 503 (710)
+..+.+|..|++.+|.+..+...+..+++|++|++++|.|+.+. .+..++.|+.|++++|.+..++ .+..+++|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhccc
Confidence 45556666666666666655444555666666666666666552 4555555666666666666554 244466666666
Q ss_pred ccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCcccccccccc--ccceEE
Q 005181 504 VYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASP--NLLELR 581 (710)
Q Consensus 504 l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~ 581 (710)
+++ |.++..... . .....+|+.+++.+|......++..+..+..+++..|.++... .+..+. +|+.++
T Consensus 169 l~~-n~i~~ie~~------~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~ 238 (414)
T KOG0531|consen 169 LSY-NRIVDIEND------E-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELY 238 (414)
T ss_pred CCc-chhhhhhhh------h-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc--CcccchhHHHHHHh
Confidence 663 333322210 0 0112255555565552222233334444444455555554321 112222 256666
Q ss_pred eecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCC---Cccc-cccCCCCcEEEEecC
Q 005181 582 LTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLME---IPIG-IEHLRNLKLLRFDCM 657 (710)
Q Consensus 582 L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~---~p~~-~~~l~~L~~L~l~~~ 657 (710)
+++|.+.... ..+..+..+..|++.+|.+... ..+...+.+..+....|.+... .... ....+.++.+.+.++
T Consensus 239 l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (414)
T KOG0531|consen 239 LSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELN 315 (414)
T ss_pred cccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccC
Confidence 6666554421 2344555566666655554332 1122344444455555544311 1111 334455555555544
Q ss_pred c
Q 005181 658 V 658 (710)
Q Consensus 658 ~ 658 (710)
+
T Consensus 316 ~ 316 (414)
T KOG0531|consen 316 P 316 (414)
T ss_pred c
Confidence 3
No 63
>PLN03150 hypothetical protein; Provisional
Probab=98.63 E-value=1.8e-08 Score=112.50 Aligned_cols=107 Identities=18% Similarity=0.096 Sum_probs=96.4
Q ss_pred CccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEc
Q 005181 552 NLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIG 631 (710)
Q Consensus 552 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 631 (710)
.++.|+|++|.+++..|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999899999999999999999999988888889999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccccC-CCCcEEEEecCc
Q 005181 632 PCPLLMEIPIGIEHL-RNLKLLRFDCMV 658 (710)
Q Consensus 632 ~n~~~~~~p~~~~~l-~~L~~L~l~~~~ 658 (710)
+|.+.+.+|..+..+ .++..+++.+|+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 999999999887653 467788888664
No 64
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=2.2e-09 Score=114.47 Aligned_cols=216 Identities=20% Similarity=0.195 Sum_probs=149.6
Q ss_pred cccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEc
Q 005181 425 ANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMV 504 (710)
Q Consensus 425 ~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l 504 (710)
..+..++.+++..|.+..+-..+..+.+|..|++.+|.|..+...+..+++|++|++++|.|+.+.. +..++.|+.|++
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhhee
Confidence 4566777777888888876556788999999999999999886558889999999999999998874 778888999999
Q ss_pred cccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCcc-ccCCCCccEEEEEeeccCCccccccccccccceEEe
Q 005181 505 YRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDW-IFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRL 582 (710)
Q Consensus 505 ~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 582 (710)
++ |.++... .+. .+.+|+.+++++| +..+... ...+.+|+.+.+.+|.+.. ...+..+..+..+++
T Consensus 148 ~~-N~i~~~~--------~~~-~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 148 SG-NLISDIS--------GLE-SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSL 215 (414)
T ss_pred cc-Ccchhcc--------CCc-cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhc
Confidence 95 5444322 111 1457888888888 5544432 4677888888888888755 234445555666677
Q ss_pred ecccCCceeEEecCCCCc--ccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCc
Q 005181 583 TGTYDYELFHFEAGWFPK--LQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMV 658 (710)
Q Consensus 583 ~~n~~~~~~~~~~~~~~~--L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 658 (710)
..|.+...-+ ...+.. |+.+++++|.+... +..+..++++..|++.+|.+... ..+...+.+..+..+.++
T Consensus 216 ~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 216 LDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNK 288 (414)
T ss_pred ccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcch
Confidence 7776654322 222333 78888888876543 24556677888888888876432 234555566666665443
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=5.1e-07 Score=94.14 Aligned_cols=187 Identities=14% Similarity=0.129 Sum_probs=105.3
Q ss_pred CCceeecccchhhc-----c-CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----Q-SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~-~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-++++|.+..++.+ . .-++.+.++||.|+||||+|+.+++.......+. ..++.......++.....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 35689999988877 3 2346778999999999999999987632111110 011111111111111110
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHh-----cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhh
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDHL-----KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAK 166 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~ 166 (710)
.........+ ....+++ +.+.+.+ .+++-++|+|+++... .++.+...+...+...++|++|.+. .+..
T Consensus 88 ~d~~~~~~~~--~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 88 LDLIEIDAAS--RTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CceEEecccc--cCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 0000000000 0011111 1222221 2345699999998876 4566777777666666677666543 3333
Q ss_pred hccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 167 YCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 167 ~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
.... +...+++++++.++..+.+.+.+.... ..-.++.+..|++.++|.|-
T Consensus 165 tI~S--Rc~~~~~~~l~~~el~~~L~~~~~~~g-----~~i~~~al~~ia~~s~G~~R 215 (363)
T PRK14961 165 TILS--RCLQFKLKIISEEKIFNFLKYILIKES-----IDTDEYALKLIAYHAHGSMR 215 (363)
T ss_pred HHHh--hceEEeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHH
Confidence 3222 226899999999999998888764321 11234667889999999875
No 66
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.59 E-value=2.2e-08 Score=74.57 Aligned_cols=58 Identities=28% Similarity=0.209 Sum_probs=25.9
Q ss_pred CccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccC
Q 005181 552 NLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDF 609 (710)
Q Consensus 552 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n 609 (710)
+|+.|++++|.++..++..|..+++|+.|++++|.+....+..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444444444444444444444444444433334444444444444444
No 67
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=2e-06 Score=93.80 Aligned_cols=192 Identities=14% Similarity=0.078 Sum_probs=109.2
Q ss_pred Cceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhh
Q 005181 22 AGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHR 95 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (710)
+++||.+..++.| .++ .+.+.++|+.|+||||+|+.+++........+. ..+........+...-..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~~G~h~ 88 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREIDEGRFV 88 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHhcCCCc
Confidence 5689999888877 223 567789999999999999998876321111110 111111122222110000
Q ss_pred hcCCCCCccccchhHHHHHHHHHHH----hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhhc
Q 005181 96 VANQPAPVEIHDMEEMELITTLRDH----LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKYC 168 (710)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~~ 168 (710)
...+-. .......+++.+.+... ..++.-++|||+++... .+..++..+.......++|++|.+. .+...+
T Consensus 89 DviEID--Aas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 89 DYVEMD--AASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred eEEEec--ccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchh
Confidence 000000 00001112222222221 12345688999999876 4677777776666677777777664 333232
Q ss_pred cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc-hHHHHH
Q 005181 169 KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP-LAIVAV 229 (710)
Q Consensus 169 ~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 229 (710)
.. +-..+.+++++.++..+.+.+.+..+. .....+....|++.++|.. -++.++
T Consensus 167 rS--RCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-----I~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 167 LS--RCLQFNLKQMPAGHIVSHLERILGEER-----IAFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hh--heEEEecCCcCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 227899999999999999988764321 1123467788889998865 455443
No 68
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=7.6e-07 Score=98.96 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=108.4
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-+++||.+..++.| .++ .+.+.++|+.|+||||+|+.+++........... .| ........+.....
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~---pC----g~C~sC~~i~~g~~ 87 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT---PC----GVCSSCVEIAQGRF 87 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC---CC----CCchHHHHHhcCCC
Confidence 35789998888776 333 4566899999999999999999874211111100 00 00000011110000
Q ss_pred hhcCCCCCcc-ccchhHHHHHHHHHH-HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhcc
Q 005181 95 RVANQPAPVE-IHDMEEMELITTLRD-HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAKYCK 169 (710)
Q Consensus 95 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~~~~ 169 (710)
.........+ ....+..++.+.+.. -..+++-++|+|+++... .+..++..+-......++|++|.+ ..+.....
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIl 167 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL 167 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHH
Confidence 0000000000 000111222222221 123567799999998874 566777777666666666665544 44443322
Q ss_pred CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch-HHHHH
Q 005181 170 SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL-AIVAV 229 (710)
Q Consensus 170 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 229 (710)
.. -..+++++++.++....+.+.+... + .....+.+..|++.++|.|- |+.++
T Consensus 168 SR--Cq~f~fkpLs~eEI~~~L~~il~~E--g---I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 168 SR--CLQFNLKSLTQDEIGTQLNHILTQE--Q---LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred Hh--heEEeCCCCCHHHHHHHHHHHHHHc--C---CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 21 2789999999999999998876432 1 12234678889999999875 44443
No 69
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=1.2e-06 Score=90.02 Aligned_cols=199 Identities=14% Similarity=0.107 Sum_probs=113.1
Q ss_pred cccCCCCCceeecccchhhc------cCCCeEEEEEcCCCCCHHHHHHHhhCCccccc--CcCcEEEEEeCCCCCHHHHH
Q 005181 15 IIFNFPHAGFSGKEDNNQLI------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKT--HFNCRAWITVGKEYKKNDLL 86 (710)
Q Consensus 15 ~~~~~~~~~~vGre~~~~~i------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~--~f~~~~~v~~~~~~~~~~~~ 86 (710)
.+.+..-..++|.+.....+ ...+..+.|+|+.|+||||+|..+++..-... .+... ....++......
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c 92 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVW 92 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHH
Confidence 34444467799999988887 33356799999999999999999988732111 01111 111111112222
Q ss_pred HHHHHHHh-------hhcCCCCCccccchhHHHHHHHHHHHhc-----CCceEEEEecCCCcc--hHHHHHHhcCCCCCC
Q 005181 87 RTILKEFH-------RVANQPAPVEIHDMEEMELITTLRDHLK-----DKSYMVVFDDVWKID--FWGDVEYALLDSKKC 152 (710)
Q Consensus 87 ~~i~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~ 152 (710)
+.+...-. .+..............+++. .+.+++. +++-++|+|+++... ....+...+...+..
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 22222100 00000000001122233333 3444432 456789999999875 455666666665555
Q ss_pred cEE-EEEcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 153 GRI-IVTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 153 ~~i-lvTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
+.+ ++|++...+....... -..+.+.+++.++..+++.+..... . -..+.+..+++.++|.|...
T Consensus 172 ~~fiLit~~~~~llptIrSR--c~~i~l~pl~~~~~~~~L~~~~~~~------~-~~~~~~~~i~~~s~G~pr~A 237 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSR--CQPISLKPLDDDELKKALSHLGSSQ------G-SDGEITEALLQRSKGSVRKA 237 (351)
T ss_pred ceEEEEECChhhccHHHHhh--ccEEEecCCCHHHHHHHHHHhhccc------C-CCHHHHHHHHHHcCCCHHHH
Confidence 554 4454544444444332 2689999999999999998854211 1 12355778999999999754
No 70
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=2.2e-06 Score=92.51 Aligned_cols=189 Identities=11% Similarity=0.067 Sum_probs=106.7
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
=+++||.+...+.| .++ .+.+.++|+.|+||||+|+.+++..-.....+ ..++......+.+...-.
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~-------~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVT-------STPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC-------CCCCccCHHHHHHhcCCC
Confidence 35689998887776 222 57889999999999999999987631111111 011111111111111000
Q ss_pred hhcCCCCCccccchhHHHHHHHHHH----HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhh
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRD----HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKY 167 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~ 167 (710)
.....-..++. ...+++.+.+.. -..++.-++|+|+++... ....+...+.....+.++|++|.+. .+...
T Consensus 87 pDviEIDAAs~--~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 87 IDLIEIDAASR--TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CceEEeccccc--CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHH
Confidence 00000000000 011122221111 123556689999998774 5666777776666666777766653 33222
Q ss_pred ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchH
Q 005181 168 CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLA 225 (710)
Q Consensus 168 ~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 225 (710)
.. ++...+++++++.++..+.+.+.+.... .....+.+..|++.++|.+..
T Consensus 165 Il--SRCq~feFkpLs~eEI~k~L~~Il~kEg-----I~id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 165 VI--SRCLQFTLRPLAVDEITKHLGAILEKEQ-----IAADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred HH--HhhheeeccCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHH
Confidence 22 2227899999999999999988774321 122346678899999987643
No 71
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=4.4e-08 Score=72.96 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=31.1
Q ss_pred CcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecC
Q 005181 599 PKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 599 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 657 (710)
|+|+.|++++|.+....+..|..+++|+.|++++|.+....|..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34555555555544433345555555555555555554333445555555555555543
No 72
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.55 E-value=6.4e-07 Score=83.26 Aligned_cols=164 Identities=22% Similarity=0.189 Sum_probs=87.0
Q ss_pred CCCceeecccchhhc----------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHH
Q 005181 20 PHAGFSGKEDNNQLI----------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTI 89 (710)
Q Consensus 20 ~~~~~vGre~~~~~i----------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (710)
.-++|||.+..++.+ .+....+.+|||+|+||||||.-+++. ....| .+.+.. ....
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~---~~~sg~-~i~k------- 88 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNF---KITSGP-AIEK------- 88 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--E---EEEECC-C--S-------
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCe---Eeccch-hhhh-------
Confidence 457899999988776 234578899999999999999999887 44433 222211 1000
Q ss_pred HHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-hHHH-HHHhcCCC--------C---------
Q 005181 90 LKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-FWGD-VEYALLDS--------K--------- 150 (710)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-~~~~-~~~~l~~~--------~--------- 150 (710)
..+++..+. .+ +++-+|++|++.... ..++ +...+-++ +
T Consensus 89 --------------------~~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 89 --------------------AGDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp --------------------CHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred --------------------HHHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 012222222 22 245578889998764 2222 22222111 1
Q ss_pred --CCcEEEEEcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 151 --KCGRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 151 --~~~~ilvTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
+.+-|=-|||.-.+..-.. ....-+..++..+.+|-.+++.+.+.. -...-..+.+.+|+..+.|-|-
T Consensus 147 l~~FTligATTr~g~ls~pLr-dRFgi~~~l~~Y~~~el~~Iv~r~a~~-----l~i~i~~~~~~~Ia~rsrGtPR 216 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLR-DRFGIVLRLEFYSEEELAKIVKRSARI-----LNIEIDEDAAEEIARRSRGTPR 216 (233)
T ss_dssp ----EEEEEESSGCCTSHCCC-TTSSEEEE----THHHHHHHHHHCCHC-----TT-EE-HHHHHHHHHCTTTSHH
T ss_pred CCCceEeeeeccccccchhHH-hhcceecchhcCCHHHHHHHHHHHHHH-----hCCCcCHHHHHHHHHhcCCChH
Confidence 1122334888744333222 122235589999999999999888732 1233456789999999999994
No 73
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=1.3e-06 Score=89.42 Aligned_cols=171 Identities=18% Similarity=0.203 Sum_probs=105.9
Q ss_pred Cceeecccchhhc-----c-CCCeEEEEEcCCCCCHHHHHHHhhCCcc----cccCcCcEEEEEeCCCCCHHHHHHHHHH
Q 005181 22 AGFSGKEDNNQLI-----Q-SERSVVAVVGEGGLGKTTVAGKIFNSEG----LKTHFNCRAWITVGKEYKKNDLLRTILK 91 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~-~~~~~i~i~G~~GvGKTtla~~~~~~~~----~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 91 (710)
++++|.+...+.+ . .-.+...++|+.|+||||+|++++.... ...|.+...|.......-..+.++++.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~ 83 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIE 83 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHH
Confidence 4677877777766 2 3356778999999999999999987521 2234444344331111111111222222
Q ss_pred HHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCchh-hhhhc
Q 005181 92 EFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHMN-VAKYC 168 (710)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~~-~~~~~ 168 (710)
.+... -..+++=++|+|+++... .+..+...+...+.++.+|++|.+.+ +....
T Consensus 84 ~~~~~-----------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 84 EVNKK-----------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred HHhcC-----------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 22110 112455577788876654 57788889988888888888776653 32322
Q ss_pred cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 169 KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 169 ~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
.. +-+.+++.+++.++....+.+.... ...+.++.++..++|.|...
T Consensus 141 ~S--Rc~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 141 KS--RCQIYKLNRLSKEEIEKFISYKYND---------IKEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred Hh--hceeeeCCCcCHHHHHHHHHHHhcC---------CCHHHHHHHHHHcCCCHHHH
Confidence 22 2278999999999998888765411 11345778889999988543
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=98.53 E-value=7.3e-07 Score=91.48 Aligned_cols=174 Identities=13% Similarity=0.112 Sum_probs=99.3
Q ss_pred Cceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcC-cEEEEEeCCCCCHHHHHHHHHHHHhh
Q 005181 22 AGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFN-CRAWITVGKEYKKNDLLRTILKEFHR 95 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~-~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (710)
++++|.+..++.| .+....+.++|++|+||||+|..+++... ...|. .++-++.+..... ..++++.+.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~-~~vr~~i~~~~~ 90 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGI-DVVRNKIKMFAQ 90 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccH-HHHHHHHHHHHh
Confidence 4578888877776 44455688999999999999999988731 11222 2222222221111 112222111111
Q ss_pred hcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhccCCC
Q 005181 96 VANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAKYCKSSS 172 (710)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~~~~~~~ 172 (710)
... ..-.++.-++|+|+++... ....+...+......+++++++.. ..+......
T Consensus 91 ~~~--------------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S-- 148 (319)
T PLN03025 91 KKV--------------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS-- 148 (319)
T ss_pred ccc--------------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH--
Confidence 000 0001345689999998875 233344445444455666665543 222222221
Q ss_pred CcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 173 SVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 173 ~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
+-..++++++++++....+...+.... ..-.++....|++.++|..-
T Consensus 149 Rc~~i~f~~l~~~~l~~~L~~i~~~eg-----i~i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 149 RCAIVRFSRLSDQEILGRLMKVVEAEK-----VPYVPEGLEAIIFTADGDMR 195 (319)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHH
Confidence 125789999999999999988874321 11224678889999998753
No 75
>PRK09087 hypothetical protein; Validated
Probab=98.50 E-value=2.4e-06 Score=82.38 Aligned_cols=140 Identities=12% Similarity=0.013 Sum_probs=85.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
.+.++|+|++|+|||+|++.++... .+.|++... +..++ ..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~~------~~~~~------------------------~~-- 84 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPNE------IGSDA------------------------AN-- 84 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHHH------cchHH------------------------HH--
Confidence 4568999999999999999998762 223544321 01111 11
Q ss_pred HHHhcCCceEEEEecCCCcc-hHHHHHHhcCCC-CCCcEEEEEcCc---------hhhhhhccCCCCcceEEccCCCchh
Q 005181 118 RDHLKDKSYMVVFDDVWKID-FWGDVEYALLDS-KKCGRIIVTTRH---------MNVAKYCKSSSSVHVHELETLPPNE 186 (710)
Q Consensus 118 ~~~l~~~~~LlvlDdv~~~~-~~~~~~~~l~~~-~~~~~ilvTtR~---------~~~~~~~~~~~~~~~~~l~~l~~~e 186 (710)
.+.+ -++++||++... +-+.+...+... ..|..+|+|++. +++...+... .+++++++++++
T Consensus 85 --~~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e~ 157 (226)
T PRK09087 85 --AAAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDAL 157 (226)
T ss_pred --hhhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHHH
Confidence 1111 278889997542 122333333222 335678888874 2233333332 789999999999
Q ss_pred HHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHH
Q 005181 187 AWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVA 228 (710)
Q Consensus 187 a~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 228 (710)
-.+++.+.+... + ..--++...-|++.+.|..-++..
T Consensus 158 ~~~iL~~~~~~~--~---~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 158 LSQVIFKLFADR--Q---LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHHHHHc--C---CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 999999998432 1 122346778888888887766643
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.2e-09 Score=103.23 Aligned_cols=178 Identities=20% Similarity=0.145 Sum_probs=111.9
Q ss_pred ccceEEEecccccc--ccCcchhcccCCCEEEcCCCccc-cccccccccccCcEEEccccccccCccCCchhhhhccCCC
Q 005181 451 FNLHYLSVKNTEVK--IIPKSIRNLLSLEILDLKNTLVS-ELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSP 527 (710)
Q Consensus 451 ~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~~~-~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~ 527 (710)
..|++|||++..|+ .+..-++.+.+|+.|.|.++.+. .+...+.+-.+|+.|+++.++.++..... .
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~------l---- 254 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ------L---- 254 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH------H----
Confidence 45888999988887 45445778888888888887653 34445677778888888877666543311 1
Q ss_pred CcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCccccccc--cccccceEEeecccC---CceeEEecCCCCccc
Q 005181 528 PQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQ--ASPNLLELRLTGTYD---YELFHFEAGWFPKLQ 602 (710)
Q Consensus 528 ~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~~---~~~~~~~~~~~~~L~ 602 (710)
.+.+|+.|..|+|++|.++.......- --++|+.|+|+|+.- ...+......+|+|.
T Consensus 255 ------------------l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 255 ------------------LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV 316 (419)
T ss_pred ------------------HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence 245667777777777766442222111 124677777776521 111222345677778
Q ss_pred EEEeccCCCcee-eeecCCcCCCccEEEEccCCCCCCCccc---cccCCCCcEEEEecCc
Q 005181 603 KLLLWDFVAVKS-VIIEKGAMPDIRELEIGPCPLLMEIPIG---IEHLRNLKLLRFDCMV 658 (710)
Q Consensus 603 ~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~~---~~~l~~L~~L~l~~~~ 658 (710)
.|||+.|..+.. ....+..++.|++|.++.|.. .+|.. +...|+|.+|++.||-
T Consensus 317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 888877754432 223456777888888888863 34543 5667788888888773
No 77
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.50 E-value=3.4e-09 Score=104.86 Aligned_cols=277 Identities=16% Similarity=0.105 Sum_probs=172.0
Q ss_pred ceeEEEEEccCccccc----ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCC-CccC--cccccCcccc
Q 005181 381 KTRRIAIQRSIDDGAL----ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAP-VDYL--PEGVGNLFNL 453 (710)
Q Consensus 381 ~~r~l~l~~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~l--~~~~~~l~~L 453 (710)
.+|.+++.++...... ....++.++.|.+.+|..+++......-..|++|+.|++..|. ++.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4566666665554321 1345777777788888877777777777778888888888854 4422 2233467888
Q ss_pred eEEEecccc-cc--ccCcchhcccCCCEEEcCCCccc---cccccccccccCcEEEccccccccCccCCchhhhhccCCC
Q 005181 454 HYLSVKNTE-VK--IIPKSIRNLLSLEILDLKNTLVS---ELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSP 527 (710)
Q Consensus 454 ~~L~l~~n~-i~--~lp~~~~~l~~L~~L~l~~n~~~---~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~ 527 (710)
++|+++.+. |+ .+..-+.++.+|+.+.+++|.-. .+-..-..+..+..+++.+|+.+++.... .+...
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~------~i~~~ 292 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW------LIACG 292 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH------HHhhh
Confidence 888887764 33 33333556666777766655321 12112234455666666677777655422 23344
Q ss_pred CcCccEEEEeecC--CCCCc-c-ccCCCCccEEEEEeec-cCCccccccc-cccccceEEeecccCCce--eEEecCCCC
Q 005181 528 PQYLQRLYLMGNM--KKLPD-W-IFKLENLIRLGLELSG-LAEEPIRVLQ-ASPNLLELRLTGTYDYEL--FHFEAGWFP 599 (710)
Q Consensus 528 ~~~L~~L~L~~n~--~~ip~-~-~~~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~~~~~--~~~~~~~~~ 599 (710)
+..|+.|..+++. +..+- . -.+.++|+.|-++.|+ ++..-...++ +++.|+.+++.++..... +.....+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4578888888772 22211 1 2677889999998887 4443333343 678888888887644322 333456788
Q ss_pred cccEEEeccCCCceee-----eecCCcCCCccEEEEccCCCCCC-CccccccCCCCcEEEEecCcHHHHH
Q 005181 600 KLQKLLLWDFVAVKSV-----IIEKGAMPDIRELEIGPCPLLME-IPIGIEHLRNLKLLRFDCMVKQVYY 663 (710)
Q Consensus 600 ~L~~L~L~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~~ 663 (710)
.|+.|.|++|...... ...-.++..|..+.|++|+.+.. .-..+..+++|+.+++-+|..-+.+
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 9999999988654322 22234566788899999886542 2345778889999999888654433
No 78
>PRK08727 hypothetical protein; Validated
Probab=98.49 E-value=2.3e-06 Score=83.23 Aligned_cols=148 Identities=13% Similarity=0.032 Sum_probs=88.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
....+.|+|++|+|||+|+.++++.. ......++|++.... ...+ .+
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~~------~~~~------------------------~~- 86 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQAA------AGRL------------------------RD- 86 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHHh------hhhH------------------------HH-
Confidence 34579999999999999999998874 233346677764221 1000 01
Q ss_pred HHHHhcCCceEEEEecCCCcc---hHH-HHHHhcCC-CCCCcEEEEEcCchh---------hhhhccCCCCcceEEccCC
Q 005181 117 LRDHLKDKSYMVVFDDVWKID---FWG-DVEYALLD-SKKCGRIIVTTRHMN---------VAKYCKSSSSVHVHELETL 182 (710)
Q Consensus 117 ~~~~l~~~~~LlvlDdv~~~~---~~~-~~~~~l~~-~~~~~~ilvTtR~~~---------~~~~~~~~~~~~~~~l~~l 182 (710)
..+.+. +.-+||+||++... .++ .+...+.. ...+..+|+|++... +...... ...++++++
T Consensus 87 ~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~---~~~~~l~~~ 162 (233)
T PRK08727 87 ALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQ---CIRIGLPVL 162 (233)
T ss_pred HHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhc---CceEEecCC
Confidence 111121 23489999997542 222 22222221 123556999998532 1111111 268999999
Q ss_pred CchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 183 PPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 183 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
+.++-.+++.+.+... + ..-..+....|++.+.|-.-.+
T Consensus 163 ~~e~~~~iL~~~a~~~--~---l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 163 DDVARAAVLRERAQRR--G---LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CHHHHHHHHHHHHHHc--C---CCCCHHHHHHHHHhCCCCHHHH
Confidence 9999999999876432 1 1223466778888887664433
No 79
>PRK04195 replication factor C large subunit; Provisional
Probab=98.49 E-value=7.9e-06 Score=88.78 Aligned_cols=170 Identities=14% Similarity=0.140 Sum_probs=102.9
Q ss_pred CCceeecccchhhc-------c--CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-------Q--SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILK 91 (710)
Q Consensus 21 ~~~~vGre~~~~~i-------~--~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 91 (710)
-++++|++..++.+ . ...+.+.|+|++|+||||+|.++++.. .+ .++.++.+...+. ..+..+..
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----~~-~~ielnasd~r~~-~~i~~~i~ 86 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----GW-EVIELNASDQRTA-DVIERVAG 86 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEcccccccH-HHHHHHHH
Confidence 35689999888877 1 126889999999999999999998873 12 2344455443222 22222222
Q ss_pred HHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc------hHHHHHHhcCCCCCCcEEEEEcCchh-h
Q 005181 92 EFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID------FWGDVEYALLDSKKCGRIIVTTRHMN-V 164 (710)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~------~~~~~~~~l~~~~~~~~ilvTtR~~~-~ 164 (710)
...... .....++-+||+|+++... .+..+...+.. .++.+|+|+.+.. .
T Consensus 87 ~~~~~~---------------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~ 143 (482)
T PRK04195 87 EAATSG---------------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDP 143 (482)
T ss_pred HhhccC---------------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCcccc
Confidence 221110 0111367799999998753 24455555442 2334666664432 1
Q ss_pred hh-hccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 165 AK-YCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 165 ~~-~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
.. ... .....+.+++++.++....+...+.... . .-..+....|++.++|..-.+
T Consensus 144 ~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~eg--i---~i~~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 144 SLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEG--I---ECDDEALKEIAERSGGDLRSA 199 (482)
T ss_pred chhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcC--C---CCCHHHHHHHHHHcCCCHHHH
Confidence 11 111 1226889999999999999888774321 1 123467889999999876444
No 80
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.49 E-value=2.1e-06 Score=80.95 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=62.9
Q ss_pred CCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCC
Q 005181 123 DKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPS 199 (710)
Q Consensus 123 ~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 199 (710)
+.+-++|+|+++... ..+.+...+...+..+.+|++|++. .+...... +...+++.+++.++..+.+.+.. .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s--r~~~~~~~~~~~~~~~~~l~~~g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS--RCQVLPFPPLSEEALLQWLIRQG---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh--hcEEeeCCCCCHHHHHHHHHHcC---C
Confidence 456689999998765 4566777777666666677666553 33332222 23689999999999998887761 1
Q ss_pred CCCCCchhHHHHHHHHHHHhCCCch
Q 005181 200 SGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 200 ~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
.++.++.+++.++|.|.
T Consensus 170 --------~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 --------SEEAAELLLALAGGSPG 186 (188)
T ss_pred --------CHHHHHHHHHHcCCCcc
Confidence 13678899999999885
No 81
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=1.8e-06 Score=92.40 Aligned_cols=193 Identities=18% Similarity=0.091 Sum_probs=107.1
Q ss_pred CCceeecccchhhc-----cC-CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCc-EEEEEeCCCCCHHHHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----QS-ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNC-RAWITVGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~-~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~-~~~v~~~~~~~~~~~~~~i~~~l 93 (710)
=.+++|.+..++.+ .+ -.+.+.++|+.|+||||+|+.+++..-....... --+..|... .....+....
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhcCC
Confidence 35688988888776 22 2468899999999999999999876321111100 001111111 1111111100
Q ss_pred hhhcCC-CCCccccchhHHHHHHHHHH-HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE-EcCchhhhhhc
Q 005181 94 HRVANQ-PAPVEIHDMEEMELITTLRD-HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV-TTRHMNVAKYC 168 (710)
Q Consensus 94 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv-TtR~~~~~~~~ 168 (710)
.....+ .........+..++.+.... -+.+++-++|+|+++... .+..+...+...+..+.+|+ |++...+....
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 000000 00000001111222222211 123566789999998764 57777777776666666554 55555554443
Q ss_pred cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 169 KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 169 ~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
... ...+++++++.++....+.+.+.... ..-..+.+..|++.++|.+-
T Consensus 176 ~SR--c~~~ef~~ls~~el~~~L~~i~~~eg-----i~ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 176 ISR--CQRYDLRRLSFEEIFKLLEYITKQEN-----LKTDIEALRIIAYKSEGSAR 224 (507)
T ss_pred Hhc--ceEEEccCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHH
Confidence 322 26899999999999999998875321 11234567889999999764
No 82
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=2.3e-06 Score=92.22 Aligned_cols=177 Identities=14% Similarity=0.093 Sum_probs=105.2
Q ss_pred Cceeecccchhhc-----c-CCCeEEEEEcCCCCCHHHHHHHhhCCccccc-------------------CcCcEEEEEe
Q 005181 22 AGFSGKEDNNQLI-----Q-SERSVVAVVGEGGLGKTTVAGKIFNSEGLKT-------------------HFNCRAWITV 76 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~-~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~-------------------~f~~~~~v~~ 76 (710)
++++|.+..++.+ . ...+.+.++|+.|+||||+|+.+++...... .|..++++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4688988887766 2 3345688999999999999999987531111 1112222211
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHH-HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCc
Q 005181 77 GKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRD-HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCG 153 (710)
Q Consensus 77 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~ 153 (710)
..... ..+..++.+.+.. -..+++-++|+|+++... ..+.+...+...+..+
T Consensus 96 as~~g-------------------------vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 96 ASRTG-------------------------VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred ccccC-------------------------HHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 11000 0011122222221 123566799999998765 4666777777666666
Q ss_pred EEEE-EcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc-hHHHHHH
Q 005181 154 RIIV-TTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP-LAIVAVG 230 (710)
Q Consensus 154 ~ilv-TtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 230 (710)
.+|+ ||....+...... +-..+++++++.++....+.+.+... + .......+..|++.++|.+ .|+..+-
T Consensus 151 ~fIL~Ttd~~kil~tI~S--Rc~~~~f~~Ls~~eI~~~L~~il~~e--g---i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 151 KFILATTDYHKIPVTILS--RCIQLHLKHISQADIKDQLKIILAKE--N---INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred eEEEEECChhhhhhhHHH--heeeEEeCCCCHHHHHHHHHHHHHHc--C---CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5554 5544444433222 22789999999999888888765322 1 1223456788899999865 3444443
No 83
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=3.5e-06 Score=87.00 Aligned_cols=197 Identities=11% Similarity=0.008 Sum_probs=109.3
Q ss_pred CCCCCceeecccchhhc-----c-CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEE---EEeCCCCCHHHHHHH
Q 005181 18 NFPHAGFSGKEDNNQLI-----Q-SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAW---ITVGKEYKKNDLLRT 88 (710)
Q Consensus 18 ~~~~~~~vGre~~~~~i-----~-~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~---v~~~~~~~~~~~~~~ 88 (710)
+..-++++|.++..+.+ . .-+..+.++|+.|+||+|+|.++++..-.......... ......+......+.
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 33357799999988877 3 33567899999999999999999876421111110000 000000001111111
Q ss_pred HHHHHhhhcC-------CCCCccccchhHHHHHHHHHHHhc-----CCceEEEEecCCCcc--hHHHHHHhcCCCCCCcE
Q 005181 89 ILKEFHRVAN-------QPAPVEIHDMEEMELITTLRDHLK-----DKSYMVVFDDVWKID--FWGDVEYALLDSKKCGR 154 (710)
Q Consensus 89 i~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ 154 (710)
+...-..... ............+++. .+.+.+. +.+-++|+|+++..+ ....+...+.....++.
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 1111000000 0000000112333332 3333332 456789999998875 45567777766666666
Q ss_pred EEEEcCch-hhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 155 IIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 155 ilvTtR~~-~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
+|++|.+. .+...... +-+.+.+.+++.++..+++.+..... ..+....++..++|.|...
T Consensus 174 ~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~~~~---------~~~~~~~l~~~s~Gsp~~A 235 (365)
T PRK07471 174 FLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAGPDL---------PDDPRAALAALAEGSVGRA 235 (365)
T ss_pred EEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhcccC---------CHHHHHHHHHHcCCCHHHH
Confidence 66666654 34333322 23789999999999999998864211 1122367889999999754
No 84
>PTZ00202 tuzin; Provisional
Probab=98.46 E-value=1.2e-05 Score=81.95 Aligned_cols=161 Identities=11% Similarity=0.144 Sum_probs=95.1
Q ss_pred cCCCCCceeecccchhhc--------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHH
Q 005181 17 FNFPHAGFSGKEDNNQLI--------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRT 88 (710)
Q Consensus 17 ~~~~~~~~vGre~~~~~i--------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 88 (710)
.+.++.+||||+.++..+ ....+++.|.|++|+||||+++.+.... . ...++.... +..+++..
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l--~----~~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE--G----MPAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC--C----ceEEEECCC--CHHHHHHH
Confidence 344578999999999988 2234699999999999999999998763 2 223333333 67899999
Q ss_pred HHHHHhhhcCCCCCccccchhHHHHHHHHHHHh-----c-CCceEEEEe--cCCCcc-hHHHHHHhcCCCCCCcEEEEEc
Q 005181 89 ILKEFHRVANQPAPVEIHDMEEMELITTLRDHL-----K-DKSYMVVFD--DVWKID-FWGDVEYALLDSKKCGRIIVTT 159 (710)
Q Consensus 89 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~-~~~~LlvlD--dv~~~~-~~~~~~~~l~~~~~~~~ilvTt 159 (710)
++..++.... . ...++...|.+.+ . +++.+||+- +.++.. .+.+.... ..-..-|+|++--
T Consensus 329 LL~ALGV~p~-----~----~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~l-a~drr~ch~v~ev 398 (550)
T PTZ00202 329 VVKALGVPNV-----E----ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVAL-ACDRRLCHVVIEV 398 (550)
T ss_pred HHHHcCCCCc-----c----cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHH-Hccchhheeeeee
Confidence 9999986321 1 1123444444332 2 566666664 333322 23332222 2222345666532
Q ss_pred CchhhhhhccCCCCcceEEccCCCchhHHHHHHHHH
Q 005181 160 RHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 160 R~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
--+.+.........-..|-+++|+.++|...-.+..
T Consensus 399 pleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 399 PLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 222111111111122578899999999988876664
No 85
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=2.7e-06 Score=88.59 Aligned_cols=183 Identities=15% Similarity=0.048 Sum_probs=99.5
Q ss_pred Cceeecccchhhc-----cC----------CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHH
Q 005181 22 AGFSGKEDNNQLI-----QS----------ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLL 86 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~----------~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (710)
++++|.+..++.+ .+ -.+.+.++||+|+|||++|+.++...-.... . . .++......
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~--~--~----~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP--D--E----PGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC--C--C----CCCCCCHHH
Confidence 3577877777666 22 3567889999999999999999765211110 0 0 011111111
Q ss_pred HHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHh-----cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEc
Q 005181 87 RTILKEFHRVANQPAPVEIHDMEEMELITTLRDHL-----KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTT 159 (710)
Q Consensus 87 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTt 159 (710)
..+............+ .......+++.+ +.+.+ .+++-++|+|+++... ....+...+...+.+..+|++|
T Consensus 77 ~~~~~~~hpD~~~i~~-~~~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 77 RTVLAGTHPDVRVVAP-EGLSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred HHHhcCCCCCEEEecc-ccccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 1111100000000000 000111122222 22222 2445588889998875 3445666666666666666655
Q ss_pred Cc-hhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 160 RH-MNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 160 R~-~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
.+ ..+....... -..+.+++++.++..+.+.+.... ..+.+..++..++|.|...
T Consensus 155 ~~~~~llpTIrSR--c~~i~f~~~~~~~i~~~L~~~~~~----------~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 155 PSPEDVLPTIRSR--CRHVALRTPSVEAVAEVLVRRDGV----------DPETARRAARASQGHIGRA 210 (394)
T ss_pred CChHHChHHHHhh--CeEEECCCCCHHHHHHHHHHhcCC----------CHHHHHHHHHHcCCCHHHH
Confidence 55 3444443322 278999999999998888754210 1356788899999998643
No 86
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=1.5e-06 Score=93.48 Aligned_cols=190 Identities=13% Similarity=0.041 Sum_probs=105.2
Q ss_pred Cceeecccchhhc-----cC-CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhh
Q 005181 22 AGFSGKEDNNQLI-----QS-ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHR 95 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~-~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (710)
++++|.+..++.| .+ -.+.+.++|++|+||||+|+.+++.....+.+...+|.+.+ ...+......
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s--------c~~i~~~~h~ 85 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES--------CLAVRRGAHP 85 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh--------hHHHhcCCCC
Confidence 4688988877776 22 34567999999999999999998874222222222222110 0000000000
Q ss_pred hcCCCCCccccc-hhHHHHHHHHHH-HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcC-chhhhhhccC
Q 005181 96 VANQPAPVEIHD-MEEMELITTLRD-HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTR-HMNVAKYCKS 170 (710)
Q Consensus 96 ~~~~~~~~~~~~-~~~~~~~~~~~~-~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR-~~~~~~~~~~ 170 (710)
....-...+... .+..++.+.+.. -+.+++-++|+|+++... .+..+...+......+.+|+++. ...+......
T Consensus 86 dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 86 DVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 000000000000 011122221211 122456689999998764 46667777766555555555544 3344333322
Q ss_pred CCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 171 SSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 171 ~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
....+++.+++.++....+.+.+.... ....++.+..|++.++|.+-.+
T Consensus 166 --Rc~~~~f~~ls~~el~~~L~~i~~~eg-----i~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 --RTQHFRFRRLTEEEIAGKLRRLLEAEG-----REAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred --ceEEEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHH
Confidence 226899999999999999988874321 1123467889999999987543
No 87
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.46 E-value=8.3e-06 Score=84.30 Aligned_cols=173 Identities=15% Similarity=0.119 Sum_probs=101.3
Q ss_pred Cceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEe--CCCCCHHHHHHHHHHHHh
Q 005181 22 AGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITV--GKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~--~~~~~~~~~~~~i~~~l~ 94 (710)
++++|++..++.+ .+....+.|+|+.|+||||+|+.+++..... .+. ..++.+ +..... ....+....+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~-~~~i~~~~~~~~~~-~~~~~~i~~~~ 93 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE-DWR-ENFLELNASDERGI-DVIRNKIKEFA 93 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC-ccc-cceEEeccccccch-HHHHHHHHHHH
Confidence 5689999988887 4445568999999999999999998763111 121 122322 221111 11111111111
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhhccCC
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKYCKSS 171 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~~~~~ 171 (710)
... ......+-++++|+++... ....+...+......+.+|+++... .+......
T Consensus 94 ~~~---------------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s- 151 (319)
T PRK00440 94 RTA---------------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS- 151 (319)
T ss_pred hcC---------------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH-
Confidence 000 0001235689999998764 3345555555555556677766432 22221111
Q ss_pred CCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchH
Q 005181 172 SSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLA 225 (710)
Q Consensus 172 ~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 225 (710)
....+++++++.++....+...+.... ..-.++.++.+++.++|.+..
T Consensus 152 -r~~~~~~~~l~~~ei~~~l~~~~~~~~-----~~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 152 -RCAVFRFSPLKKEAVAERLRYIAENEG-----IEITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred -HhheeeeCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHH
Confidence 125789999999999999888774321 112356788999999998754
No 88
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.45 E-value=9.9e-07 Score=79.59 Aligned_cols=116 Identities=16% Similarity=0.063 Sum_probs=65.7
Q ss_pred ecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCC
Q 005181 26 GKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQP 100 (710)
Q Consensus 26 Gre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~ 100 (710)
|++..+..+ ....+.+.|+|++|+|||++++++++.. ......++++.+............+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh--hcCCCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 566666666 3346789999999999999999999873 2223456676654432221111100000
Q ss_pred CCccccchhHHHHHHHHHHHhcCCceEEEEecCCCc--chHHHHHHhcCCC------CCCcEEEEEcCch
Q 005181 101 APVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKI--DFWGDVEYALLDS------KKCGRIIVTTRHM 162 (710)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~------~~~~~ilvTtR~~ 162 (710)
............++.++|+||++.. .....+...+... ..+..+|+|+...
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011111222356789999999864 2222333333222 3567888888765
No 89
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=1.6e-06 Score=94.87 Aligned_cols=195 Identities=13% Similarity=0.080 Sum_probs=108.5
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
=+++||.+..++.| .++ ++.+.++|+.|+||||+|+.+++..-....+. ..++........+...-.
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 35689988888777 323 45678999999999999999988732111110 011111122222211000
Q ss_pred hhcCCCCCcc-ccchhHHHHHHHHHH-HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhcc
Q 005181 95 RVANQPAPVE-IHDMEEMELITTLRD-HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAKYCK 169 (710)
Q Consensus 95 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~~~~ 169 (710)
.....-...+ ....+..++.+.+.. -..+++-++|+|+++... ....++..+-..+...++|++|.+ ..+.....
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH
Confidence 0000000000 011111222222221 123566799999998775 566777777766666666654444 44443332
Q ss_pred CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch-HHHHH
Q 005181 170 SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL-AIVAV 229 (710)
Q Consensus 170 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 229 (710)
.. -..+.+++++.++....+.+.+.... ..........|++.++|.+- |+.++
T Consensus 168 SR--C~~~~f~~Ls~~ei~~~L~~il~~e~-----i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 168 SR--CLQFHLKALDVEQIRQQLEHILQAEQ-----IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hh--heEeeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 27899999999999999888763221 11234567789999999775 44443
No 90
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=9.3e-07 Score=92.62 Aligned_cols=190 Identities=13% Similarity=0.005 Sum_probs=106.4
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
=+++||.+..+..| .+. .+.+.++|+.|+||||+|+.+++......... ...+....+ ...+.....
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~s----C~~i~~g~~ 89 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTS----CLEITKGIS 89 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcH----HHHHHccCC
Confidence 35689988877766 333 35689999999999999999988732111111 011111111 111111110
Q ss_pred hhcCCCCCcccc-chhHHHHHHHHHH-HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE-EcCchhhhhhcc
Q 005181 95 RVANQPAPVEIH-DMEEMELITTLRD-HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV-TTRHMNVAKYCK 169 (710)
Q Consensus 95 ~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv-TtR~~~~~~~~~ 169 (710)
.....-...... ..+..++.+.+.. ...++.-++|+|+++... .+..++..+-.......+|. ||....+.....
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 000000000000 0111222333322 123566799999998775 56777777765555555554 554444443333
Q ss_pred CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 170 SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 170 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
.. -+.+.+++++.++..+.+.+.+.... ..-..+....|++.++|.+.
T Consensus 170 SR--Cq~~~f~~ls~~~i~~~L~~i~~~Eg-----i~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 170 SR--CQDFIFKKVPLSVLQDYSEKLCKIEN-----VQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hh--hheeeecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCChHH
Confidence 22 16799999999999988888864321 11234678889999999873
No 91
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.44 E-value=2.5e-06 Score=83.17 Aligned_cols=150 Identities=13% Similarity=0.113 Sum_probs=89.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
......+.|+|+.|+|||+|+.++++.. ......+.|+.+...... ..+..
T Consensus 42 ~~~~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~~---------------------------~~~~~ 92 (235)
T PRK08084 42 QEHSGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAWF---------------------------VPEVL 92 (235)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhhh---------------------------hHHHH
Confidence 3345689999999999999999998873 223345677766431000 00111
Q ss_pred HHHHHHhcCCceEEEEecCCCcc---hHHHH-HHhcCCC-CCC-cEEEEEcCchh---------hhhhccCCCCcceEEc
Q 005181 115 TTLRDHLKDKSYMVVFDDVWKID---FWGDV-EYALLDS-KKC-GRIIVTTRHMN---------VAKYCKSSSSVHVHEL 179 (710)
Q Consensus 115 ~~~~~~l~~~~~LlvlDdv~~~~---~~~~~-~~~l~~~-~~~-~~ilvTtR~~~---------~~~~~~~~~~~~~~~l 179 (710)
+.+ .. --++++||++... .|+.. ...+... ..| .++|+||+... +...+.. ..++++
T Consensus 93 ~~~----~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~---g~~~~l 164 (235)
T PRK08084 93 EGM----EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDW---GQIYKL 164 (235)
T ss_pred HHh----hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhC---Cceeee
Confidence 111 11 1378999997642 33322 2222211 123 36888888642 2222222 268999
Q ss_pred cCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 180 ETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 180 ~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
+++++++-.+++.+.+... + ..-.++...-|++.+.|..-++
T Consensus 165 ~~~~~~~~~~~l~~~a~~~--~---~~l~~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 165 QPLSDEEKLQALQLRARLR--G---FELPEDVGRFLLKRLDREMRTL 206 (235)
T ss_pred cCCCHHHHHHHHHHHHHHc--C---CCCCHHHHHHHHHhhcCCHHHH
Confidence 9999999999998866432 1 2223467778888888765544
No 92
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.44 E-value=6.6e-07 Score=100.04 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=94.6
Q ss_pred Cceeecccchhh---c-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHH
Q 005181 22 AGFSGKEDNNQL---I-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 22 ~~~vGre~~~~~---i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (710)
++|+|++..+.. + ......+.|+|++|+||||+|+.+++. ....| +.+++.. .. ..+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f---~~lna~~--~~---i~d----- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANH--TRAHF---SSLNAVL--AG---VKD----- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH--hcCcc---eeehhhh--hh---hHH-----
Confidence 568898877642 2 555667899999999999999999876 33333 2222111 00 000
Q ss_pred hhhcCCCCCccccchhHHHHHHHHHHHh--cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE--EcCchh--hh
Q 005181 94 HRVANQPAPVEIHDMEEMELITTLRDHL--KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV--TTRHMN--VA 165 (710)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv--TtR~~~--~~ 165 (710)
..+......+.+ .+++.++|+|+++... ..+.+...+ ..++.+++ ||.++. +.
T Consensus 93 ----------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 93 ----------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVN 153 (725)
T ss_pred ----------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhh
Confidence 111122222222 2466799999998764 233333322 33555555 344432 11
Q ss_pred hhccCCCCcceEEccCCCchhHHHHHHHHHcCCCC--CCCCchhHHHHHHHHHHHhCCCch
Q 005181 166 KYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSS--GGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 166 ~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
.... ++..++.+++++.++...++.+....... +.....-..+..+.|++.+.|..-
T Consensus 154 ~aL~--SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALV--SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhh--ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 1111 12368999999999999999887641100 001112234667888888888743
No 93
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.7e-06 Score=93.00 Aligned_cols=192 Identities=13% Similarity=0.057 Sum_probs=106.2
Q ss_pred CCceeecccchhhc------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccC--cCcEEEEEeCCCCCHHHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTH--FNCRAWITVGKEYKKNDLLRTILKE 92 (710)
Q Consensus 21 ~~~~vGre~~~~~i------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~--f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (710)
=+++||.+..++.| ..-.+.+.++|+.|+||||+|+.+++.....+. -.+.. ...+........|...
T Consensus 15 FddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHcC
Confidence 35689988888776 333567799999999999999999876321110 00000 0111111111111110
Q ss_pred HhhhcCCCCCccccchhHHHHHHHHHHH----hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE-EcCchhhh
Q 005181 93 FHRVANQPAPVEIHDMEEMELITTLRDH----LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV-TTRHMNVA 165 (710)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv-TtR~~~~~ 165 (710)
-......-... .....+++.+.+... ..++.-++|+|+++... .+..++..+-.....+++|+ ||....+.
T Consensus 91 ~hpDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 91 RFVDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CCCcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 00000000000 011122233322221 13456689999998875 56667777766666666555 55444554
Q ss_pred hhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchH
Q 005181 166 KYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLA 225 (710)
Q Consensus 166 ~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 225 (710)
..+.... ..+.++.++.++..+.+.+.+.... .....+..+.|++.++|.|..
T Consensus 169 pTIrSRC--q~f~f~~ls~eei~~~L~~Il~~Eg-----i~~d~eAL~~IA~~A~Gs~Rd 221 (700)
T PRK12323 169 VTVLSRC--LQFNLKQMPPGHIVSHLDAILGEEG-----IAHEVNALRLLAQAAQGSMRD 221 (700)
T ss_pred hHHHHHH--HhcccCCCChHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHH
Confidence 4433221 6899999999999998887764321 111235568889999998853
No 94
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.42 E-value=3.8e-06 Score=87.92 Aligned_cols=170 Identities=14% Similarity=0.085 Sum_probs=95.0
Q ss_pred CCceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCH
Q 005181 21 HAGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKK 82 (710)
Q Consensus 21 ~~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (710)
.+++.|+++..+.| ....+.+.|+|++|+|||++|+++++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----
Confidence 45688998888776 123566999999999999999999987 33332 22211
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc----------------hHHHHHHhc
Q 005181 83 NDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID----------------FWGDVEYAL 146 (710)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~l 146 (710)
..+... .++. ....+...+...-...+.+|++|+++... .+..+...+
T Consensus 190 ~~l~~~---~~g~-------------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~l 253 (364)
T TIGR01242 190 SELVRK---YIGE-------------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEL 253 (364)
T ss_pred HHHHHH---hhhH-------------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHh
Confidence 111111 0100 00111112222223466899999997531 122222222
Q ss_pred CC--CCCCcEEEEEcCchhhhhhc--cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC
Q 005181 147 LD--SKKCGRIIVTTRHMNVAKYC--KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL 222 (710)
Q Consensus 147 ~~--~~~~~~ilvTtR~~~~~~~~--~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 222 (710)
.. ...+..||.||......... ........+.++..+.++..++|..+....... .. .....+++.+.|+
T Consensus 254 d~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~--~~----~~~~~la~~t~g~ 327 (364)
T TIGR01242 254 DGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA--ED----VDLEAIAKMTEGA 327 (364)
T ss_pred hCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC--cc----CCHHHHHHHcCCC
Confidence 21 12345777788754322211 111223678999999999999999887443211 11 1256677777776
Q ss_pred c
Q 005181 223 P 223 (710)
Q Consensus 223 P 223 (710)
.
T Consensus 328 s 328 (364)
T TIGR01242 328 S 328 (364)
T ss_pred C
Confidence 4
No 95
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=5.4e-06 Score=88.53 Aligned_cols=213 Identities=15% Similarity=0.107 Sum_probs=108.3
Q ss_pred CCceeecccchhhc-----cCCC-eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSER-SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~-~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-+++||.+...+.| .+.. +.+.++||+|+||||+|+.+++......... + .++........+...-.
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~---~----~pc~~c~~c~~i~~g~~ 85 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKG---V----EPCNECRACRSIDEGTF 85 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CCCcccHHHHHHhcCCC
Confidence 45689988877766 3333 5688999999999999999987631111000 0 00000000000000000
Q ss_pred hhcCCCCCccccch-hHHHHHHHHHH-HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE-EcCchhhhhhcc
Q 005181 95 RVANQPAPVEIHDM-EEMELITTLRD-HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV-TTRHMNVAKYCK 169 (710)
Q Consensus 95 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv-TtR~~~~~~~~~ 169 (710)
.....-........ +...+.+.+.. -..+++-++|+|+++... ..+.+...+...+....+|+ |+....+.....
T Consensus 86 ~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~ 165 (472)
T PRK14962 86 MDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTII 165 (472)
T ss_pred CccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHh
Confidence 00000000000000 11111111111 122456799999998663 44556666655444444444 443333433332
Q ss_pred CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC-chHHHHHHhhhc--CCCCCHHHHHHH
Q 005181 170 SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL-PLAIVAVGGLLS--TKNMVVSEWKKL 246 (710)
Q Consensus 170 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~l~--~~~~~~~~~~~~ 246 (710)
. +...+++.+++.++....+.+.+.... ..-.++.+..|++.++|. +.++..+..+.. .+..+.+..+.+
T Consensus 166 S--R~~vv~f~~l~~~el~~~L~~i~~~eg-----i~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~ 238 (472)
T PRK14962 166 S--RCQVIEFRNISDELIIKRLQEVAEAEG-----IEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEA 238 (472)
T ss_pred c--CcEEEEECCccHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 2 236899999999999999988874321 112346678888878655 566666554332 122344444444
Q ss_pred H
Q 005181 247 F 247 (710)
Q Consensus 247 ~ 247 (710)
+
T Consensus 239 l 239 (472)
T PRK14962 239 L 239 (472)
T ss_pred H
Confidence 3
No 96
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.40 E-value=3.3e-06 Score=81.06 Aligned_cols=158 Identities=14% Similarity=0.150 Sum_probs=90.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
...+.|+|+.|+|||.|+.++++.......-..++|++ ..++...+...+... ....+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~----------------~~~~~ 91 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG----------------EIEEF 91 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT----------------SHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc----------------cchhh
Confidence 45689999999999999999998842222223577764 344555555554331 13335
Q ss_pred HHHhcCCceEEEEecCCCcc---hHHH-HHHhcCCC-CCCcEEEEEcCchh---------hhhhccCCCCcceEEccCCC
Q 005181 118 RDHLKDKSYMVVFDDVWKID---FWGD-VEYALLDS-KKCGRIIVTTRHMN---------VAKYCKSSSSVHVHELETLP 183 (710)
Q Consensus 118 ~~~l~~~~~LlvlDdv~~~~---~~~~-~~~~l~~~-~~~~~ilvTtR~~~---------~~~~~~~~~~~~~~~l~~l~ 183 (710)
++.++. -=+|++||++... .|+. +...+... ..|.++|+|++... +....... .++++++.+
T Consensus 92 ~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G---l~~~l~~pd 167 (219)
T PF00308_consen 92 KDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG---LVVELQPPD 167 (219)
T ss_dssp HHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS---EEEEE----
T ss_pred hhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc---chhhcCCCC
Confidence 555553 3478899997754 2222 22222211 34568999996531 22222222 689999999
Q ss_pred chhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 184 PNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 184 ~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
+++-.+++.+.+.... ..-.++.++-|++.+.+..-.|
T Consensus 168 ~~~r~~il~~~a~~~~-----~~l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 168 DEDRRRILQKKAKERG-----IELPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHHHHHHHHTT-------S-HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHHHHHHHhC-----CCCcHHHHHHHHHhhcCCHHHH
Confidence 9999999999885321 1223456666777766655444
No 97
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.40 E-value=4.6e-09 Score=103.99 Aligned_cols=265 Identities=16% Similarity=0.107 Sum_probs=177.0
Q ss_pred CceeEEEeecCCCCCcchhhhhhcccccccEEecCCCC-Ccc--CcccccCcccceEEEeccc-ccc--ccCcchhcccC
Q 005181 402 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAP-VDY--LPEGVGNLFNLHYLSVKNT-EVK--IIPKSIRNLLS 475 (710)
Q Consensus 402 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~--l~~~~~~l~~L~~L~l~~n-~i~--~lp~~~~~l~~ 475 (710)
..++.|.+.++....+..+.....++++++.|++.++. +++ +-..-.++++|++|++..| .++ .+..-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 67899999999999888889999999999999999987 432 2222347899999999884 455 22223457899
Q ss_pred CCEEEcCCC-cccc--ccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec--CCCCCc--ccc
Q 005181 476 LEILDLKNT-LVSE--LPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN--MKKLPD--WIF 548 (710)
Q Consensus 476 L~~L~l~~n-~~~~--~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n--~~~ip~--~~~ 548 (710)
|++|+++.+ .+.. +..-..++.+++.+.+.+|....... +........-+..+++..| ++.... .-.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~------l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA------LLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH------HHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 999999976 4433 33345567777777666544332111 1122233334666666666 222221 226
Q ss_pred CCCCccEEEEEeec-cCCccccccc-cccccceEEeecccCCce--eEEecCCCCcccEEEeccCCCcee--eeecCCcC
Q 005181 549 KLENLIRLGLELSG-LAEEPIRVLQ-ASPNLLELRLTGTYDYEL--FHFEAGWFPKLQKLLLWDFVAVKS--VIIEKGAM 622 (710)
Q Consensus 549 ~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~L~~n~~~~~--~~~~~~~l 622 (710)
.+..|+.|+.+++. ++......++ ++++|+.|.+++|..-+. +...-.+++.|+.+++..+..... +...-.+|
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 78899999998876 4443344443 689999999998863221 112235789999999988864322 22233589
Q ss_pred CCccEEEEccCCCCCCC-----ccccccCCCCcEEEEecCcHHHHHhcccCCcCc
Q 005181 623 PDIRELEIGPCPLLMEI-----PIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGK 672 (710)
Q Consensus 623 ~~L~~L~l~~n~~~~~~-----p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~ 672 (710)
+.|+.|.+++|...... ...-.++..|..+.+++||......+..++.+.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 99999999999876432 333467788999999999875555554444433
No 98
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=2e-06 Score=92.74 Aligned_cols=197 Identities=13% Similarity=0.063 Sum_probs=107.1
Q ss_pred CCceeecccchhhc-----c-CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----Q-SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~-~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
=++++|++..++.+ . ..++.+.++||.|+||||+|+.+++.....+ |.. ..++......+.+.....
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~-~~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKD-GDCCNSCSVCESINTNQS 87 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCC-CCCCcccHHHHHHHcCCC
Confidence 45789999988877 2 3356788999999999999999987642111 111 111222222222221111
Q ss_pred hhcCCCCCcc-ccchhHHHHHHHHHHH-hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEc-Cchhhhhhcc
Q 005181 95 RVANQPAPVE-IHDMEEMELITTLRDH-LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTT-RHMNVAKYCK 169 (710)
Q Consensus 95 ~~~~~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTt-R~~~~~~~~~ 169 (710)
.....-...+ ....+.+++...+... ..+++=++|+|+++... .+..+...+...+..+.+|++| ....+.....
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 0000000000 0000112222222210 11234469999998764 4566777766655555555544 4434433322
Q ss_pred CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch-HHHHHHh
Q 005181 170 SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL-AIVAVGG 231 (710)
Q Consensus 170 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 231 (710)
. +...+++.+++.++....+...+.... ..-.++.+..+++.++|.+- |+..+-.
T Consensus 168 S--Rcq~ieF~~Ls~~eL~~~L~~il~keg-----i~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 168 S--RCQRYNFKKLNNSELQELLKSIAKKEK-----IKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred h--hhhhcccCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 126899999999999988888764321 11124668889999999664 4444433
No 99
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.39 E-value=2.4e-07 Score=87.37 Aligned_cols=55 Identities=18% Similarity=0.336 Sum_probs=33.1
Q ss_pred ceeecccchhhc--------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 23 GFSGKEDNNQLI--------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 23 ~~vGre~~~~~i--------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
.||||+++++.+ ....+.+.|+|++|+|||+++++++......+.+ ++.+.+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~ 63 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDS 63 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEecc
Confidence 489999999998 4556899999999999999999998884333222 444444443
No 100
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.38 E-value=1.6e-05 Score=84.75 Aligned_cols=188 Identities=11% Similarity=0.062 Sum_probs=109.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHH
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLR 118 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (710)
.-+.|+|+.|+|||+|+.++++.......-..++|++ ..++...+...+.... ...+.++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~--------------~~~~~~~ 201 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH--------------KEIEQFK 201 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh--------------hHHHHHH
Confidence 4588999999999999999988632222223456654 3455666665553210 1233445
Q ss_pred HHhcCCceEEEEecCCCcc----hHHHHHHhcCC-CCCCcEEEEEcCch-hhhhhcc-----CCCCcceEEccCCCchhH
Q 005181 119 DHLKDKSYMVVFDDVWKID----FWGDVEYALLD-SKKCGRIIVTTRHM-NVAKYCK-----SSSSVHVHELETLPPNEA 187 (710)
Q Consensus 119 ~~l~~~~~LlvlDdv~~~~----~~~~~~~~l~~-~~~~~~ilvTtR~~-~~~~~~~-----~~~~~~~~~l~~l~~~ea 187 (710)
+.++. .-+||+||++... ..+.+...+.. ...|..||+|+... ....... ...+..++.+++++.++-
T Consensus 202 ~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 202 NEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred HHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 55543 3478889997543 12233333322 12344688886643 1111110 111226788999999999
Q ss_pred HHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhh------c--CCCCCHHHHHHHHHhh
Q 005181 188 WKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLL------S--TKNMVVSEWKKLFDRM 250 (710)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~--~~~~~~~~~~~~~~~~ 250 (710)
.+++.+.+.... . ...-.++.+.-|++.++|.|-.+..+...+ . ++..+.+.-+.++...
T Consensus 281 ~~iL~~~~~~~g--l-~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 281 TAIIKKEIKNQN--I-KQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHhcC--C-CCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 999999985321 0 012235778899999999997775544333 2 1334555555666554
No 101
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=5.2e-06 Score=90.56 Aligned_cols=189 Identities=13% Similarity=0.055 Sum_probs=103.9
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-+++||.+..++.| .++ .+.+.++|+.|+||||+|+.+++..-...... +..|. .......+...-.
T Consensus 15 FddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg----~C~sCr~i~~g~~ 87 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCG----VCQSCTQIDAGRY 87 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCc----ccHHHHHHhccCc
Confidence 35689999988877 333 56789999999999999999987631111110 01111 1111111111000
Q ss_pred hhcCCCCCccccchhHHHHHHHHHH----HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhh
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRD----HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKY 167 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~ 167 (710)
.........+ ....+++.+.+.. -..+++-++|+|+++... .+..+...+......+++|++|.+. .+...
T Consensus 88 ~DvlEidaAs--~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~T 165 (709)
T PRK08691 88 VDLLEIDAAS--NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVT 165 (709)
T ss_pred cceEEEeccc--cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchH
Confidence 0000000000 0111122222211 122456689999998765 3556677776655566666666543 33322
Q ss_pred ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchH
Q 005181 168 CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLA 225 (710)
Q Consensus 168 ~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 225 (710)
... +-..+.+++++.++....+.+.+.... ..-..+.+..|++.++|.+..
T Consensus 166 IrS--RC~~f~f~~Ls~eeI~~~L~~Il~kEg-----i~id~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 166 VLS--RCLQFVLRNMTAQQVADHLAHVLDSEK-----IAYEPPALQLLGRAAAGSMRD 216 (709)
T ss_pred HHH--HHhhhhcCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHhCCCHHH
Confidence 221 115778889999999999988874321 122346788999999998743
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.5e-06 Score=91.67 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=106.8
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEE-eCCCCCHHHHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWIT-VGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~-~~~~~~~~~~~~~i~~~l 93 (710)
-++++|.+...+.| .+. ...+.++||.|+||||+|+.+++.......++..-|.. ...++......+.+....
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 46788988877776 333 35688999999999999999987632222111111110 011111111122222110
Q ss_pred hhhcCCCCCccccchhHHHHHHHHHHHh-----cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEc-Cchhhh
Q 005181 94 HRVANQPAPVEIHDMEEMELITTLRDHL-----KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTT-RHMNVA 165 (710)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTt-R~~~~~ 165 (710)
......-... .....+++.+ +.+.+ .+++-++|+|+++... .+..+...+......+.+|+++ +...+.
T Consensus 95 ~~n~~~~~~~--~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 95 SLNISEFDAA--SNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred CCCeEeeccc--ccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 0000000000 0011122222 22323 2455688999998775 5667777777666666665544 444444
Q ss_pred hhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 166 KYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 166 ~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
..... ....+++++++.++....+...+... ...-.++.++.+++.++|.+-
T Consensus 172 ~tl~s--R~~~v~f~~l~~~ei~~~l~~~~~~~-----g~~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 172 ATIAS--RCQRFNFKRIPLEEIQQQLQGICEAE-----GISVDADALQLIGRKAQGSMR 223 (397)
T ss_pred HHHHH--HHHHhhcCCCCHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHcCCCHH
Confidence 33221 12678999999999988888776322 112235778899999999774
No 103
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.35 E-value=9e-06 Score=85.36 Aligned_cols=175 Identities=13% Similarity=0.082 Sum_probs=104.1
Q ss_pred CCCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCccccc--Cc-----------------CcEEEE
Q 005181 20 PHAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKT--HF-----------------NCRAWI 74 (710)
Q Consensus 20 ~~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~--~f-----------------~~~~~v 74 (710)
.-++++|.+..++.+ .+. .+.+.++|++|+||||+|+.++....... .+ ..++++
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~ 91 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEI 91 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence 345789999988887 333 45778999999999999999876631110 11 011222
Q ss_pred EeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHH-HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCC
Q 005181 75 TVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRD-HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKK 151 (710)
Q Consensus 75 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~ 151 (710)
....... ...+ .++.+.+.. -..+++-++|+|+++... ....+...+...+.
T Consensus 92 ~~~~~~~-~~~~------------------------~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~ 146 (355)
T TIGR02397 92 DAASNNG-VDDI------------------------REILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPE 146 (355)
T ss_pred eccccCC-HHHH------------------------HHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcc
Confidence 1110000 0011 122222211 112345588999998764 46667777766556
Q ss_pred CcEEEEEcCchh-hhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 152 CGRIIVTTRHMN-VAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 152 ~~~ilvTtR~~~-~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
.+.+|++|.+.. +....... ...+++++++.++..+.+...+.... ..-.++.+..+++.++|.|..+
T Consensus 147 ~~~lIl~~~~~~~l~~~l~sr--~~~~~~~~~~~~~l~~~l~~~~~~~g-----~~i~~~a~~~l~~~~~g~~~~a 215 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILSR--CQRFDFKRIPLEDIVERLKKILDKEG-----IKIEDEALELIARAADGSLRDA 215 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHhh--eeEEEcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCChHHH
Confidence 666666665543 33333222 26789999999999999988764321 1122467888999999988654
No 104
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.33 E-value=2.4e-06 Score=83.22 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=89.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
...+.+.|+|+.|+|||+||.++++.. ...-..++++++..... .+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~--~~~~~~~~~i~~~~~~~----------~~---------------------- 85 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADA--SYGGRNARYLDAASPLL----------AF---------------------- 85 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEEehHHhHH----------HH----------------------
Confidence 345789999999999999999998863 22223456666533110 00
Q ss_pred HHHHHhcCCceEEEEecCCCcch--HHHHHHhcCCC-CCCc-EEEEEcCchhhhhhcc-----CCCCcceEEccCCCchh
Q 005181 116 TLRDHLKDKSYMVVFDDVWKIDF--WGDVEYALLDS-KKCG-RIIVTTRHMNVAKYCK-----SSSSVHVHELETLPPNE 186 (710)
Q Consensus 116 ~~~~~l~~~~~LlvlDdv~~~~~--~~~~~~~l~~~-~~~~-~ilvTtR~~~~~~~~~-----~~~~~~~~~l~~l~~~e 186 (710)
... ...-++|+||++.... ...+...+... ..+. .+|+|++......... .......++++++++++
T Consensus 86 ---~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~ 161 (227)
T PRK08903 86 ---DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDAD 161 (227)
T ss_pred ---hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHH
Confidence 011 1233788999976542 22233333221 2333 3666766532111110 10112588999999998
Q ss_pred HHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhh
Q 005181 187 AWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLL 233 (710)
Q Consensus 187 a~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 233 (710)
-..++.+.+... + ..-.++..+.+++...|++..+..+-..+
T Consensus 162 ~~~~l~~~~~~~--~---v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 162 KIAALKAAAAER--G---LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHHHHHHc--C---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 778777654221 1 12234678888888999988775544433
No 105
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=6.6e-06 Score=87.39 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=104.9
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccc-------------------cCcCcEEEEE
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLK-------------------THFNCRAWIT 75 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~-------------------~~f~~~~~v~ 75 (710)
=+++||.+..++.+ .+. ++.+.++|+.|+||||+|+.++...-.. +.+..++.++
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 35688988887776 333 4588999999999999999997642100 1111223332
Q ss_pred eCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHH-HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCC
Q 005181 76 VGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRD-HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKC 152 (710)
Q Consensus 76 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~ 152 (710)
...... .+.+++ +.+.... -..++.-++|+|+++... .+..+...+...+..
T Consensus 92 aas~~~-vddIR~------------------------Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 92 AASNTS-VDDIKV------------------------ILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred cccCCC-HHHHHH------------------------HHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 221111 111111 1111111 012455689999998764 467777788776667
Q ss_pred cEEEEEc-CchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 153 GRIIVTT-RHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 153 ~~ilvTt-R~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
+++|++| ....+....... ...+++++++.++....+.+.+.... ..-.++.+..|++.++|.+.
T Consensus 147 v~fIlatte~~Kl~~tI~SR--c~~~~f~~l~~~el~~~L~~ia~~Eg-----i~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISR--CQRFDLQKIPTDKLVEHLVDIAKKEN-----IEHDEESLKLIAENSSGSMR 212 (491)
T ss_pred eEEEEEeCChHHHHHHHHHh--heeeecccccHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHH
Confidence 7666655 444444433322 27899999999999999988874321 12234667889999998774
No 106
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.32 E-value=4.5e-06 Score=87.68 Aligned_cols=169 Identities=12% Similarity=0.084 Sum_probs=93.5
Q ss_pred CCceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCH
Q 005181 21 HAGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKK 82 (710)
Q Consensus 21 ~~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (710)
.++++|+++..+.+ ...++.|.|+|++|+|||++|+++++. .... |+.+..
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 45788999988776 134577999999999999999999886 2222 222211
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc------------hH-HHHHHhc---
Q 005181 83 NDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID------------FW-GDVEYAL--- 146 (710)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~------------~~-~~~~~~l--- 146 (710)
. ++....... ....+...+...-...+.+|++|+++... .. ..+...+
T Consensus 199 ~----~l~~~~~g~------------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l 262 (389)
T PRK03992 199 S----ELVQKFIGE------------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEM 262 (389)
T ss_pred H----HHhHhhccc------------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhc
Confidence 1 111111000 00111122222223467899999997631 11 1122222
Q ss_pred CCC--CCCcEEEEEcCchhhhhhc--cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC
Q 005181 147 LDS--KKCGRIIVTTRHMNVAKYC--KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL 222 (710)
Q Consensus 147 ~~~--~~~~~ilvTtR~~~~~~~~--~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 222 (710)
... ..+..||.||...+..... ........+++++.+.++-.++|..+.....-+ .. .....+++.+.|+
T Consensus 263 d~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~--~~----~~~~~la~~t~g~ 336 (389)
T PRK03992 263 DGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA--DD----VDLEELAELTEGA 336 (389)
T ss_pred cccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC--Cc----CCHHHHHHHcCCC
Confidence 211 2234677777654433221 112233679999999999999999887432111 11 1245666677665
No 107
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.9e-05 Score=85.44 Aligned_cols=188 Identities=13% Similarity=0.066 Sum_probs=102.4
Q ss_pred Cceeecccchhhc-----c-CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhh
Q 005181 22 AGFSGKEDNNQLI-----Q-SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHR 95 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~-~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (710)
+++||-+..++.| . .-+..+.++|+.|+||||+|+.+++..-....... .++........+...-..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~~g~~~ 88 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA-------NPCNDCENCREIDEGRFP 88 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc-------ccCCCCHHHHHHhcCCCc
Confidence 5689998888877 3 33566789999999999999999876321111110 011111111111110000
Q ss_pred hcCCCCCccccchhHHHHHHHHHH----HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEc-Cchhhhhhc
Q 005181 96 VANQPAPVEIHDMEEMELITTLRD----HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTT-RHMNVAKYC 168 (710)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTt-R~~~~~~~~ 168 (710)
....-...+ ....+++.+.+.. -..++.-++|+|+++... .+..+...+...+..+++|++| ....+....
T Consensus 89 d~~eidaas--~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI 166 (509)
T PRK14958 89 DLFEVDAAS--RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTV 166 (509)
T ss_pred eEEEEcccc--cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHH
Confidence 000000000 0111122221111 112455688999998764 5666777777766667666654 433443332
Q ss_pred cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchH
Q 005181 169 KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLA 225 (710)
Q Consensus 169 ~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 225 (710)
... -..+++++++.++....+.+.+.... ..-..+.+..|++.++|.+..
T Consensus 167 ~SR--c~~~~f~~l~~~~i~~~l~~il~~eg-----i~~~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 167 LSR--CLQFHLAQLPPLQIAAHCQHLLKEEN-----VEFENAALDLLARAANGSVRD 216 (509)
T ss_pred HHH--hhhhhcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCcHHH
Confidence 221 26789999999998877776664321 111235677888899987743
No 108
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=3.8e-09 Score=111.23 Aligned_cols=124 Identities=16% Similarity=0.045 Sum_probs=60.1
Q ss_pred ccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccC
Q 005181 531 LQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDF 609 (710)
Q Consensus 531 L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n 609 (710)
|...+.++| +..+..++.-++.|+.|+|++|+++.. ..+..|++|++|||+.|.+...+.....++. |+.|.+.+|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 333444444 333444445555556666666655542 2455555666666665555444333333333 555555555
Q ss_pred CCceeeeecCCcCCCccEEEEccCCCCCCC-ccccccCCCCcEEEEecCcH
Q 005181 610 VAVKSVIIEKGAMPDIRELEIGPCPLLMEI-PIGIEHLRNLKLLRFDCMVK 659 (710)
Q Consensus 610 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~~~~ 659 (710)
.+... ..+.++.+|+.||+++|-+.+-- -..+..+..|+.|+|.|||.
T Consensus 243 ~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 ALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 43322 22345555566666655443210 01234445555556665543
No 109
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.31 E-value=2.1e-06 Score=98.63 Aligned_cols=179 Identities=15% Similarity=0.082 Sum_probs=93.3
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCccc---ccC-cCcEE-EEEeCCCCCHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGL---KTH-FNCRA-WITVGKEYKKNDLLRTIL 90 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~---~~~-f~~~~-~v~~~~~~~~~~~~~~i~ 90 (710)
-+.++||+.++.++ ......+.|+|++|+||||+|+.++++... ... .+..+ .+..+.-...
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag-------- 257 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAG-------- 257 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcc--------
Confidence 36789999999988 445567789999999999999999887211 101 11222 2322210000
Q ss_pred HHHhhhcCCCCCccccchhHH-HHHHHHHHHh-cCCceEEEEecCCCcc---------hHHHHHHhcCCCCCCc-EEEE-
Q 005181 91 KEFHRVANQPAPVEIHDMEEM-ELITTLRDHL-KDKSYMVVFDDVWKID---------FWGDVEYALLDSKKCG-RIIV- 157 (710)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-~~~~~LlvlDdv~~~~---------~~~~~~~~l~~~~~~~-~ilv- 157 (710)
.... .+.. .+...+.+.- .+++++|++|+++... +...+..+.. ..|. ++|-
T Consensus 258 ------------~~~~-ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~Iga 322 (852)
T TIGR03345 258 ------------ASVK-GEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAA 322 (852)
T ss_pred ------------cccc-hHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEe
Confidence 0000 0111 1111122211 2468999999986542 2222333322 2333 3444
Q ss_pred EcCch---hhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 158 TTRHM---NVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 158 TtR~~---~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
||.++ .+........+.+.+.+++++.+++.+++........ ......-..+....+++.+.++.
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e-~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLE-KHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhh-hcCCCeeCHHHHHHHHHHccccc
Confidence 55421 1111111122347899999999999999765542211 01111223455666666666554
No 110
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=2e-09 Score=113.24 Aligned_cols=132 Identities=20% Similarity=0.115 Sum_probs=100.2
Q ss_pred CCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEE
Q 005181 551 ENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEI 630 (710)
Q Consensus 551 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 630 (710)
..|...+.+.|.++. .-.++.-++.|++|+|++|++... ..+..++.|+.|||+.|.+....-....+|. |+.|.+
T Consensus 164 n~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 467788888998865 346788899999999999998775 3678999999999999986554434455665 999999
Q ss_pred ccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCc
Q 005181 631 GPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLS 702 (710)
Q Consensus 631 ~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~ 702 (710)
.+|.+.+ + -.+.++.+|+.|++++| -+.++-.-.+...+..|+.|.|.||.+..-|
T Consensus 240 rnN~l~t-L-~gie~LksL~~LDlsyN--------------ll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 240 RNNALTT-L-RGIENLKSLYGLDLSYN--------------LLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cccHHHh-h-hhHHhhhhhhccchhHh--------------hhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999764 3 37889999999999944 3344333333344577888999999886544
No 111
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.30 E-value=2.4e-05 Score=83.34 Aligned_cols=185 Identities=11% Similarity=0.060 Sum_probs=102.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
...+.|+|+.|+|||+|++++++.......-..++|++. .++..++...+... . ...+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------------~----~~~~ 193 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN------------K----MEEF 193 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC------------C----HHHH
Confidence 356899999999999999999987422211235667643 23344444443211 1 2223
Q ss_pred HHHhcCCceEEEEecCCCcch----HHHHHHhcCCC-CCCcEEEEEcCc-hhhhhhcc-----CCCCcceEEccCCCchh
Q 005181 118 RDHLKDKSYMVVFDDVWKIDF----WGDVEYALLDS-KKCGRIIVTTRH-MNVAKYCK-----SSSSVHVHELETLPPNE 186 (710)
Q Consensus 118 ~~~l~~~~~LlvlDdv~~~~~----~~~~~~~l~~~-~~~~~ilvTtR~-~~~~~~~~-----~~~~~~~~~l~~l~~~e 186 (710)
.+.+++ .-+|++||++.... .+.+...+... ..+..+|+|+.. +....... ...+...+.+++.+.++
T Consensus 194 ~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~ 272 (405)
T TIGR00362 194 KEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLET 272 (405)
T ss_pred HHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHH
Confidence 333433 23788999975421 12233322211 234457777754 22111111 11112478999999999
Q ss_pred HHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhh------cCCCCCHHHHHHHHHhh
Q 005181 187 AWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLL------STKNMVVSEWKKLFDRM 250 (710)
Q Consensus 187 a~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~~~~~~~~~~~~~~~~~ 250 (710)
-..++.+.+.... ..-.++.+..|++.+.|..-.|.-+-..+ .++..+.+..+..+...
T Consensus 273 r~~il~~~~~~~~-----~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 273 RLAILQKKAEEEG-----LELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 9999999985421 12234677888888888776544322211 22334555666666543
No 112
>PF14516 AAA_35: AAA-like domain
Probab=98.30 E-value=0.00025 Score=72.94 Aligned_cols=212 Identities=15% Similarity=0.133 Sum_probs=122.5
Q ss_pred CCCCceeecccchh----hccCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC-----CCHHHHHHHH
Q 005181 19 FPHAGFSGKEDNNQ----LIQSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE-----YKKNDLLRTI 89 (710)
Q Consensus 19 ~~~~~~vGre~~~~----~i~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~-----~~~~~~~~~i 89 (710)
......|.|...-+ .|......+.|.||-.+|||+++.++.+.... ..| .++++++... .+...++..+
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 33455778873222 33555779999999999999999999887422 233 4567876542 2455666666
Q ss_pred HHHHhhhcCCCCCccccch-----hHHHHHHHHHHHh-c--CCceEEEEecCCCcch----HHHHHHhcC----CCC---
Q 005181 90 LKEFHRVANQPAPVEIHDM-----EEMELITTLRDHL-K--DKSYMVVFDDVWKIDF----WGDVEYALL----DSK--- 150 (710)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l-~--~~~~LlvlDdv~~~~~----~~~~~~~l~----~~~--- 150 (710)
+..+...-+..... .+.+ ........+.+.+ . +++++|++|+++..-. ..++...+. ...
T Consensus 86 ~~~i~~~L~l~~~l-~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 86 CEEISRQLKLDEKL-DEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHcCCChhH-HHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 66666554322110 0111 1123333444432 2 5899999999986421 122322221 111
Q ss_pred -CCcEEEEEcCch--hhhhhcc--CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchH
Q 005181 151 -KCGRIIVTTRHM--NVAKYCK--SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLA 225 (710)
Q Consensus 151 -~~~~ilvTtR~~--~~~~~~~--~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 225 (710)
...-.++...+. ....... +......+++++|+.+|...|..++...- .....++|...++|+|.-
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~---------~~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF---------SQEQLEQLMDWTGGHPYL 235 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC---------CHHHHHHHHHHHCCCHHH
Confidence 112122222221 1111111 01112468899999999999998875321 123399999999999999
Q ss_pred HHHHHhhhcCCCCCHHH
Q 005181 226 IVAVGGLLSTKNMVVSE 242 (710)
Q Consensus 226 l~~~~~~l~~~~~~~~~ 242 (710)
+..++..+.....+.++
T Consensus 236 v~~~~~~l~~~~~~~~~ 252 (331)
T PF14516_consen 236 VQKACYLLVEEQITLEQ 252 (331)
T ss_pred HHHHHHHHHHccCcHHH
Confidence 99999999776545443
No 113
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=8.3e-06 Score=89.20 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=106.0
Q ss_pred CCceeecccchhhc------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCc--CcEEEEEeCCCCCHHHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHF--NCRAWITVGKEYKKNDLLRTILKE 92 (710)
Q Consensus 21 ~~~~vGre~~~~~i------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~ 92 (710)
=+++||-+..++.| ..-+..+.++|+.|+||||+|+.+++..-..+.. .+.-. .++........+...
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g 90 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSG 90 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcC
Confidence 35688988877776 3335677999999999999999997663111110 11111 112222222222110
Q ss_pred HhhhcCCCCCccccchhHHHHHHHHHHH----hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEc-Cchhhh
Q 005181 93 FHRVANQPAPVEIHDMEEMELITTLRDH----LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTT-RHMNVA 165 (710)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTt-R~~~~~ 165 (710)
-......-... .....+++.+.+... ..++.-++|+|+++... .+..+...+......+++|++| ....+.
T Consensus 91 ~h~D~~eldaa--s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 91 RFVDYTELDAA--SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CCCceeecCcc--cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 00000000000 011122222222211 12344588999998875 5666777776666666666554 434444
Q ss_pred hhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 166 KYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 166 ~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
...... -..+++++++.++....+.+.+.... .....+.+..|++.++|.+..+
T Consensus 169 ~TIlSR--c~~~~f~~Ls~eei~~~L~~i~~~eg-----i~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 169 VTVLSR--CLQFNLRPMAPETVLEHLTQVLAAEN-----VPAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred HHHHHh--ceeeecCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHH
Confidence 333222 27899999999999999888764321 1123456788888999876433
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=6.1e-06 Score=90.58 Aligned_cols=195 Identities=13% Similarity=0.076 Sum_probs=106.6
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEE-eCCCCCHHHHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWIT-VGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~-~~~~~~~~~~~~~i~~~l 93 (710)
-+++||.+..++.+ .+. ...+.++|+.|+||||+|+.+++..-.....+.-.|.. ...++......+.+...-
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 45789988888777 333 45688999999999999999987642222111111111 111222222222222111
Q ss_pred hhhcCCCCCccccchhHHHHHHHHHHH----hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE-EcCchhhhh
Q 005181 94 HRVANQPAPVEIHDMEEMELITTLRDH----LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV-TTRHMNVAK 166 (710)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv-TtR~~~~~~ 166 (710)
......-... .....+++.+.+.+. ..+.+-++|+|+++... ..+.+...+......+.+|+ |++...+..
T Consensus 95 ~~n~~~~d~~--s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 95 SLNISEFDAA--SNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred CCCeEEeccc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 0000000000 001122333222211 22445578999998875 46667777777666665554 444444443
Q ss_pred hccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 167 YCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 167 ~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
..... ...+++.+++.++....+.+.+.... ..-..+.++.+++.++|..-
T Consensus 173 TI~SR--c~~vef~~l~~~ei~~~L~~i~~~eg-----i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 173 TIASR--CQRFNFKRIPLDEIQSQLQMICRAEG-----IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred HHHhh--ceEEecCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCHH
Confidence 33222 27899999999998888877653211 11234678889999999654
No 115
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.27 E-value=2.1e-05 Score=84.77 Aligned_cols=183 Identities=12% Similarity=0.067 Sum_probs=104.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCc--CcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHF--NCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
...+.|+|++|+|||+|++++++.. ...+ ..++|++.. ++..++...+... ...
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~v~yi~~~------~~~~~~~~~~~~~----------------~~~ 203 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI--LEKNPNAKVVYVTSE------KFTNDFVNALRNN----------------TME 203 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEEEHH------HHHHHHHHHHHcC----------------cHH
Confidence 3568999999999999999999883 3332 346676542 3333343333211 022
Q ss_pred HHHHHhcCCceEEEEecCCCcc----hHHHHHHhcCC-CCCCcEEEEEcCchh-hhh----hc-cCCCCcceEEccCCCc
Q 005181 116 TLRDHLKDKSYMVVFDDVWKID----FWGDVEYALLD-SKKCGRIIVTTRHMN-VAK----YC-KSSSSVHVHELETLPP 184 (710)
Q Consensus 116 ~~~~~l~~~~~LlvlDdv~~~~----~~~~~~~~l~~-~~~~~~ilvTtR~~~-~~~----~~-~~~~~~~~~~l~~l~~ 184 (710)
.+++.++. .-+||+||++... ..+.+...+.. ...|..+++|+.... ... .. ....+..++++++.+.
T Consensus 204 ~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~ 282 (450)
T PRK00149 204 EFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDL 282 (450)
T ss_pred HHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCH
Confidence 33444443 3478899997542 12233332211 122445777776431 111 11 1111225799999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhh------hcCCCCCHHHHHHHHHhh
Q 005181 185 NEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGL------LSTKNMVVSEWKKLFDRM 250 (710)
Q Consensus 185 ~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~------l~~~~~~~~~~~~~~~~~ 250 (710)
++-..++.+.+... + ..-.++.+.-|++.+.|..-.|..+-.. +.++..+....+..+...
T Consensus 283 ~~r~~il~~~~~~~--~---~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 283 ETRIAILKKKAEEE--G---IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHHHc--C---CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 99999999988532 1 1223467888888888876644322211 223445666677777654
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=98.27 E-value=9.2e-06 Score=79.04 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
...+.|+|+.|+|||.|+.++++.. ......++|++... +... ...+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~-------------------------~~~~ 91 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR-------------------------GPEL 91 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh-------------------------hHHH
Confidence 3678999999999999999998763 22234678876432 1110 0112
Q ss_pred HHHhcCCceEEEEecCCCc---chHHH-HHHhcCCC-CCCcEEEEEcCchhh-hhhcc-----CCCCcceEEccCCCchh
Q 005181 118 RDHLKDKSYMVVFDDVWKI---DFWGD-VEYALLDS-KKCGRIIVTTRHMNV-AKYCK-----SSSSVHVHELETLPPNE 186 (710)
Q Consensus 118 ~~~l~~~~~LlvlDdv~~~---~~~~~-~~~~l~~~-~~~~~ilvTtR~~~~-~~~~~-----~~~~~~~~~l~~l~~~e 186 (710)
.+.+++-. +||+||++.. ..|+. +...+... ..|..+|+|++...- ..... ...+..+++++++++++
T Consensus 92 ~~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 92 LDNLEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDED 170 (234)
T ss_pred HHhhhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHH
Confidence 22333333 6788999743 23333 44433322 345678888875321 11100 01112678999999999
Q ss_pred HHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 187 AWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 187 a~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
-.+++..++... + ..-.++...-|++.+.|..-.+
T Consensus 171 ~~~il~~ka~~~--~---~~l~~ev~~~L~~~~~~d~r~l 205 (234)
T PRK05642 171 KLRALQLRASRR--G---LHLTDEVGHFILTRGTRSMSAL 205 (234)
T ss_pred HHHHHHHHHHHc--C---CCCCHHHHHHHHHhcCCCHHHH
Confidence 999998665432 1 1112466777777777765444
No 117
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=9.2e-06 Score=88.40 Aligned_cols=192 Identities=13% Similarity=0.081 Sum_probs=103.9
Q ss_pred Cceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhh
Q 005181 22 AGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHR 95 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (710)
++++|.+..++.+ .+. .+.+.++|+.|+||||+|+.++...-...... ..++........+...-..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pcg~C~~C~~i~~~~~~ 88 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT-------ATPCGVCSACLEIDSGRFV 88 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCCC
Confidence 5688998888777 333 45678999999999999999987631111100 0011111111111110000
Q ss_pred hcCCCCCccccchhHHHHHHHHHHH----hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEc-Cchhhhhhc
Q 005181 96 VANQPAPVEIHDMEEMELITTLRDH----LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTT-RHMNVAKYC 168 (710)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTt-R~~~~~~~~ 168 (710)
......... ....+++.+.+... ..+++-++|+|+++... ....+...+...+..+.+|++| ....+....
T Consensus 89 d~~ei~~~~--~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI 166 (527)
T PRK14969 89 DLIEVDAAS--NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 166 (527)
T ss_pred ceeEeeccc--cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhH
Confidence 000000000 01111222211111 12456799999998775 4666777777766666566544 433333222
Q ss_pred cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch-HHHHH
Q 005181 169 KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL-AIVAV 229 (710)
Q Consensus 169 ~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 229 (710)
.. +-..+++++++.++....+.+.+.... .....+.+..|++.++|.+- |+..+
T Consensus 167 ~S--Rc~~~~f~~l~~~~i~~~L~~il~~eg-----i~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 167 LS--RCLQFNLKQMPPPLIVSHLQHILEQEN-----IPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HH--HHHHHhcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 116889999999999988877663221 11234567888999999774 44443
No 118
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.24 E-value=3.4e-06 Score=81.98 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=61.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC--CCHHHHHHHHHHHHhhhcCCCCCccccchhHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE--YKKNDLLRTILKEFHRVANQPAPVEIHDMEEMEL 113 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 113 (710)
.....++|.|++|+|||||++++++.... .+|+.++|+.+... .+..++++.+...+....- ..++.....-....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~-~~~~~~~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF-DEPPERHVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC-CCCHHHHHHHHHHH
Confidence 34567889999999999999999998533 38888889886655 5777777777332222111 11111111111122
Q ss_pred HHHHHHH-hcCCceEEEEecCCCc
Q 005181 114 ITTLRDH-LKDKSYMVVFDDVWKI 136 (710)
Q Consensus 114 ~~~~~~~-l~~~~~LlvlDdv~~~ 136 (710)
.+..... -.++++++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 2222222 2478999999999654
No 119
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.24 E-value=2e-06 Score=98.18 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=83.4
Q ss_pred Cceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcc---cccCc-CcEEEEEeCCCCCHHHHHHHHHHH
Q 005181 22 AGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEG---LKTHF-NCRAWITVGKEYKKNDLLRTILKE 92 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~---~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~ 92 (710)
+.++||+.+++++ ......+.++|++|+|||++|+.+++... ....+ +..+|. ++ . ..+...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~----~~l~a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----M----GSLLAG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----H----HHHhhh
Confidence 5799999999888 44566788999999999999999988731 11112 233332 11 0 111110
Q ss_pred HhhhcCCCCCccccchhHHHHHHHHHHHh-cCCceEEEEecCCCcc----------hHHHHHHhcCCCCCCcEEEEEcCc
Q 005181 93 FHRVANQPAPVEIHDMEEMELITTLRDHL-KDKSYMVVFDDVWKID----------FWGDVEYALLDSKKCGRIIVTTRH 161 (710)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDdv~~~~----------~~~~~~~~l~~~~~~~~ilvTtR~ 161 (710)
.... .+.++....+.+.+ +.++.+|++|+++..- +...+..+....+.-..|-.||+.
T Consensus 253 ~~~~-----------g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~ 321 (731)
T TIGR02639 253 TKYR-----------GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYE 321 (731)
T ss_pred cccc-----------chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHH
Confidence 0000 01112222333333 2457899999987431 122333332222222233335542
Q ss_pred h---hhhhhccCCCCcceEEccCCCchhHHHHHHHHH
Q 005181 162 M---NVAKYCKSSSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 162 ~---~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
+ ..........+.+.+.+++++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 111111111233689999999999999999765
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.5e-05 Score=87.43 Aligned_cols=192 Identities=13% Similarity=0.063 Sum_probs=108.4
Q ss_pred CCceeecccchhhc-----cC-CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcC--cEEEEEeCCCCCHHHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----QS-ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFN--CRAWITVGKEYKKNDLLRTILKE 92 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~-~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~--~~~~v~~~~~~~~~~~~~~i~~~ 92 (710)
-++++|.+..++.| .+ -...+.++|+.|+||||+|+.+++..-...... +..+- .+........+...
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~~g 98 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIMEG 98 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHhcC
Confidence 45789999888877 33 356789999999999999999988732111110 10011 11111111222111
Q ss_pred HhhhcCCCCCccccchhHHHHHHHHHHHh-----cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE-EcCchhh
Q 005181 93 FHRVANQPAPVEIHDMEEMELITTLRDHL-----KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV-TTRHMNV 164 (710)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv-TtR~~~~ 164 (710)
-..........+ ....+++.+ +.+.+ .+++-++|+|+++... ..+.+...+......+++|+ |+....+
T Consensus 99 ~h~Dv~e~~a~s--~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 99 RHVDVLEMDAAS--HTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred CCCceEEecccc--cCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 100000000000 111222222 22222 2345578999998775 46677777777666776665 4444444
Q ss_pred hhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 165 AKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 165 ~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
....... -..+++++++.++....+.+.+.... ..-..+.+..|++.++|.+..+
T Consensus 176 l~tI~SR--cq~~~f~~l~~~el~~~L~~i~~keg-----i~i~~eAl~lIa~~a~Gdlr~a 230 (598)
T PRK09111 176 PVTVLSR--CQRFDLRRIEADVLAAHLSRIAAKEG-----VEVEDEALALIARAAEGSVRDG 230 (598)
T ss_pred hHHHHhh--eeEEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHH
Confidence 4333322 26899999999999999988764321 1123467888899999987544
No 121
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.9e-05 Score=83.08 Aligned_cols=173 Identities=13% Similarity=0.152 Sum_probs=99.0
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccc------cCcCcEEEEEeCCCC-CHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLK------THFNCRAWITVGKEY-KKNDLLR 87 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~------~~f~~~~~v~~~~~~-~~~~~~~ 87 (710)
=++++|.+..++.+ .+. .+.+.++|++|+||||+|+.+++..... ..|+..+ +...... ...+.+.
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~i~ 94 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAASNNSVDDIR 94 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccccCCCHHHHH
Confidence 35678998888777 333 4688899999999999999998763111 1122111 1111110 0011111
Q ss_pred HHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEc-Cchhh
Q 005181 88 TILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTT-RHMNV 164 (710)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTt-R~~~~ 164 (710)
++.+++.. .-..+++-++|+|+++... .+..+...+...+..+.+|+++ ....+
T Consensus 95 ~l~~~~~~-----------------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 95 NLIDQVRI-----------------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred HHHHHHhh-----------------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 11111100 0012345589999998764 3556666665544455555544 43333
Q ss_pred hhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 165 AKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 165 ~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
...... ....++.++++.++....+...+.... ..-.++.++.+++.++|.+-
T Consensus 152 ~~~l~s--r~~~v~~~~~~~~~l~~~l~~~~~~~g-----~~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 152 IPTILS--RCQIFDFKRITIKDIKEHLAGIAVKEG-----IKFEDDALHIIAQKADGALR 204 (367)
T ss_pred CHHHHh--cceeEecCCccHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHhCCCCHH
Confidence 332221 125789999999999988888764321 11234678888888988654
No 122
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.23 E-value=6.7e-06 Score=81.77 Aligned_cols=136 Identities=14% Similarity=0.082 Sum_probs=69.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
....+.++|++|+||||+|+.+++.....+......++.+... .+.. ..... ......+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~----~~~g~------------~~~~~~~~ 100 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVG----EYIGH------------TAQKTREV 100 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhh----hhccc------------hHHHHHHH
Confidence 3467889999999999999999875311111111123333221 1111 10000 00111222
Q ss_pred HHHHhcCCceEEEEecCCCcc----------hHHHHHHhcCCCCCCcEEEEEcCchhhhh------hccCCCCcceEEcc
Q 005181 117 LRDHLKDKSYMVVFDDVWKID----------FWGDVEYALLDSKKCGRIIVTTRHMNVAK------YCKSSSSVHVHELE 180 (710)
Q Consensus 117 ~~~~l~~~~~LlvlDdv~~~~----------~~~~~~~~l~~~~~~~~ilvTtR~~~~~~------~~~~~~~~~~~~l~ 180 (710)
+... ..-+|++|+++... ..+.+...+........+++++....... ... ......+.++
T Consensus 101 ~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~-sRf~~~i~f~ 176 (261)
T TIGR02881 101 IKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLR-SRFPISIDFP 176 (261)
T ss_pred HHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHH-hccceEEEEC
Confidence 2211 23488999997532 23334444434333334555554432211 111 1112568999
Q ss_pred CCCchhHHHHHHHHHc
Q 005181 181 TLPPNEAWKLFCRKAF 196 (710)
Q Consensus 181 ~l~~~ea~~l~~~~~~ 196 (710)
+++.+|..+++.+.+.
T Consensus 177 ~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 177 DYTVEELMEIAERMVK 192 (261)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998874
No 123
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.21 E-value=6.1e-05 Score=80.12 Aligned_cols=155 Identities=9% Similarity=0.019 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHH
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLR 118 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (710)
.-+.|+|+.|+|||+|+.++++.. ......++|++. ..+...+...+... ..+.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~~------~~f~~~~~~~l~~~----------------~~~~f~ 197 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRS------ELFTEHLVSAIRSG----------------EMQRFR 197 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEeeH------HHHHHHHHHHHhcc----------------hHHHHH
Confidence 568899999999999999999873 223345677653 23333443333210 022344
Q ss_pred HHhcCCceEEEEecCCCcc----hHHHHHHhcCC-CCCCcEEEEEcCc-hhhhh----hcc-CCCCcceEEccCCCchhH
Q 005181 119 DHLKDKSYMVVFDDVWKID----FWGDVEYALLD-SKKCGRIIVTTRH-MNVAK----YCK-SSSSVHVHELETLPPNEA 187 (710)
Q Consensus 119 ~~l~~~~~LlvlDdv~~~~----~~~~~~~~l~~-~~~~~~ilvTtR~-~~~~~----~~~-~~~~~~~~~l~~l~~~ea 187 (710)
+..+. .-+|++||++... ..+.+...+.. ...|..||+||.. +.... ... ...+..++++.+++.++-
T Consensus 198 ~~~~~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r 276 (445)
T PRK12422 198 QFYRN-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGL 276 (445)
T ss_pred HHccc-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHH
Confidence 44443 3478889986642 11222222211 1134467777754 22111 111 111226889999999999
Q ss_pred HHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 188 WKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
..++.+.+... + ..-..+.+.-|++.+.|.-
T Consensus 277 ~~iL~~k~~~~--~---~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 277 RSFLERKAEAL--S---IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHHHHc--C---CCCCHHHHHHHHHhcCCCH
Confidence 99999887542 1 1112345555666666553
No 124
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=2e-05 Score=87.05 Aligned_cols=190 Identities=15% Similarity=0.083 Sum_probs=103.9
Q ss_pred CCceeecccchhhc-----c-CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----Q-SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~-~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
=++++|.+..++.+ . .-.+.+.++||.|+||||+|+.++...-..... ..+ .++.. .... .+
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~--~~~----~pC~~---C~~~---~~ 84 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKT--DLL----EPCQE---CIEN---VN 84 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccC--CCC----CchhH---HHHh---hc
Confidence 35688988887776 3 335677899999999999999998763111110 000 00000 0000 00
Q ss_pred hhcC--CCCCcc-ccchhHHHHHHHHHHH-hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEE-EEcCchhhhhh
Q 005181 95 RVAN--QPAPVE-IHDMEEMELITTLRDH-LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRII-VTTRHMNVAKY 167 (710)
Q Consensus 95 ~~~~--~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~il-vTtR~~~~~~~ 167 (710)
.... ....+. ....+.+++.+.+... ..+++-++|+|+++... .+..+...+-..+....+| +|++...+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000 000000 0001112222222211 12456688999998764 5666776766655555544 45544445433
Q ss_pred ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch-HHHHH
Q 005181 168 CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL-AIVAV 229 (710)
Q Consensus 168 ~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 229 (710)
.... .+.+++.+++.++....+...+.... .....+.+..+++.++|.+. |+..+
T Consensus 165 I~SR--cq~ieF~~L~~eeI~~~L~~il~keg-----I~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 165 ILSR--VQRFNFRRISEDEIVSRLEFILEKEN-----ISYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHhh--ceeEEccCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3222 26899999999999988887653321 11224568889999988664 44433
No 125
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=3e-05 Score=78.85 Aligned_cols=211 Identities=13% Similarity=0.163 Sum_probs=127.9
Q ss_pred ccccCCCCCceeecccchhhc---------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHH
Q 005181 14 RIIFNFPHAGFSGKEDNNQLI---------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKND 84 (710)
Q Consensus 14 ~~~~~~~~~~~vGre~~~~~i---------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (710)
.+....++..++|||.++..+ ....+.+.|.|-+|.|||.+...++.+......-..++++++..-.....
T Consensus 142 ~l~~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 142 SLLNTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred HHHhcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 344556688999999999887 66679999999999999999999988843333324678998887678888
Q ss_pred HHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCC--ceEEEEecCCCcc--hHHHHHHhcCC-CCCCcEEEE-E
Q 005181 85 LLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDK--SYMVVFDDVWKID--FWGDVEYALLD-SKKCGRIIV-T 158 (710)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~LlvlDdv~~~~--~~~~~~~~l~~-~~~~~~ilv-T 158 (710)
++..|...+......+.. + .+..+.+..+.++. -+++|+|..|... .-+.+...+.| .-+++++|+ -
T Consensus 222 iF~kI~~~~~q~~~s~~~----~---~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiG 294 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGT----G---MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIG 294 (529)
T ss_pred HHHHHHHHHHHHhcCCch----h---HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeee
Confidence 999999888443221111 1 24455666666553 4899999997643 11122222222 224444433 1
Q ss_pred cCc-----hhhhhhcc--CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHh
Q 005181 159 TRH-----MNVAKYCK--SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGG 231 (710)
Q Consensus 159 tR~-----~~~~~~~~--~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 231 (710)
--+ ........ ..-.+.++..+|.+.++-.++|........-.......+.-.|++++...|.+-.||.+.-+
T Consensus 295 iANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 295 IANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred ehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 111 11111111 23334788999999999999999997543211111122333344444444444455544433
No 126
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=2e-05 Score=89.51 Aligned_cols=188 Identities=13% Similarity=0.069 Sum_probs=104.7
Q ss_pred Cceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhh
Q 005181 22 AGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHR 95 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (710)
+++||.+..++.| .++ .+.+.++|+.|+||||+|+.+++.......... ..+........+...-..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g~~~ 87 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPGGPG 87 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcCCCC
Confidence 5689988888777 333 456789999999999999999877422111100 011111111111111000
Q ss_pred hcCCCCCccccchhHHHHHHHHHHH-----hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEc-Cchhhhhh
Q 005181 96 VANQPAPVEIHDMEEMELITTLRDH-----LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTT-RHMNVAKY 167 (710)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTt-R~~~~~~~ 167 (710)
...............+++.+ +++. ..++.-++|||+++.+. .+..++..+......+.+|++| ....+...
T Consensus 88 ~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 88 SLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred CCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 00000000000011122222 2221 23455688999998875 5566777887776666666544 44445444
Q ss_pred ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 168 CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 168 ~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
+... -+.+++.+++.++..+.+.+.+.... .......+..|++.++|.+.
T Consensus 167 IrSR--c~~v~F~~l~~~~l~~~L~~il~~EG-----v~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 167 IRSR--THHYPFRLVPPEVMRGYLERICAQEG-----VPVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred HHhh--eeEEEeeCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHH
Confidence 3322 27899999999999888887753221 11123556788889998773
No 127
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=7.2e-05 Score=79.82 Aligned_cols=184 Identities=13% Similarity=0.043 Sum_probs=104.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCc--CcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHF--NCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
..-+.|+|++|+|||+||.++++.. ...+ ..++|++. .++..++...+... + ..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l--~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------------~----~~ 185 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYV--VQNEPDLRVMYITS------EKFLNDLVDSMKEG------------K----LN 185 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH--HHhCCCCeEEEEEH------HHHHHHHHHHHhcc------------c----HH
Confidence 3469999999999999999999873 2322 25677654 34444444443211 1 12
Q ss_pred HHHHHhcCCceEEEEecCCCcc---hH-HHHHHhcCC-CCCCcEEEEEcC-chhhhhhc----c-CCCCcceEEccCCCc
Q 005181 116 TLRDHLKDKSYMVVFDDVWKID---FW-GDVEYALLD-SKKCGRIIVTTR-HMNVAKYC----K-SSSSVHVHELETLPP 184 (710)
Q Consensus 116 ~~~~~l~~~~~LlvlDdv~~~~---~~-~~~~~~l~~-~~~~~~ilvTtR-~~~~~~~~----~-~~~~~~~~~l~~l~~ 184 (710)
.+++..+.+.-+|++||++... .. +.+...+.. ...|..+|+||. .+.-.... . ...+..++++++.+.
T Consensus 186 ~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 186 EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 2333443345589999997542 11 223222211 123446888874 43222111 1 111225889999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHh------hhcCCCCCHHHHHHHHHhh
Q 005181 185 NEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGG------LLSTKNMVVSEWKKLFDRM 250 (710)
Q Consensus 185 ~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~------~l~~~~~~~~~~~~~~~~~ 250 (710)
++-..++.+.+... + ..-.++.+..|++.+.|..-.|.-+-. .+.++..+.+.-+..+...
T Consensus 266 e~r~~IL~~~~~~~--~---~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 266 ETRKKIARKMLEIE--H---GELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHHHHhc--C---CCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999887532 1 112346788888888877554433222 2233445666666666544
No 128
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.3e-05 Score=85.21 Aligned_cols=196 Identities=12% Similarity=0.119 Sum_probs=108.2
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-++++|.+..++.| .++ ...+.++|+.|+||||+|+.+++..-....... .++......+.+.....
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 35678888777766 333 577889999999999999999887421111110 11122222222221110
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHH-----hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhh
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDH-----LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAK 166 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~ 166 (710)
.....-... .....+++ +.+++. ..+++-++|+|+++... ....+...+........+|++|.+ ..+..
T Consensus 88 pDv~eId~a--~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 88 VDVVEIDGA--SNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred CceEEEecc--cccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 000000000 00011111 112222 23456789999998874 456666666554445555554544 44443
Q ss_pred hccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc-hHHHHHHhhh
Q 005181 167 YCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP-LAIVAVGGLL 233 (710)
Q Consensus 167 ~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l 233 (710)
.... +-..+++++++.++....+...+.... ..-..+.++.|++.++|.+ .|+..+...+
T Consensus 165 TI~S--Rcq~i~F~pLs~~eL~~~L~~il~~eg-----i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 165 TIVS--RCQHFTFTRLSEAGLEAHLTKVLGREG-----VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHh--hhhccccCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3221 126889999999999998888664321 1123467888899999865 5666665444
No 129
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.4e-05 Score=85.31 Aligned_cols=198 Identities=14% Similarity=0.097 Sum_probs=108.2
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
=+++||.+..++.| .+. .+.+.++|+.|+||||+|+.++.........+. .++........+...-.
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA-------TPCGVCESCVALAPNGP 84 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC-------CcccccHHHHHhhcccC
Confidence 35789988888877 333 456789999999999999999876321111110 11111111222111000
Q ss_pred hhcC--CCCCccccc-hhHHHHHHHHHHH-hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE-EcCchhhhhh
Q 005181 95 RVAN--QPAPVEIHD-MEEMELITTLRDH-LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV-TTRHMNVAKY 167 (710)
Q Consensus 95 ~~~~--~~~~~~~~~-~~~~~~~~~~~~~-l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv-TtR~~~~~~~ 167 (710)
.... .....+... .+..++.+.+... ..+++-++|+|+++... ..+.+...+........+|+ |+....+...
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 0000 000000000 1111222222211 12455688999998764 56677777777666665555 5554555444
Q ss_pred ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch-HHHHHHhh
Q 005181 168 CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL-AIVAVGGL 232 (710)
Q Consensus 168 ~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~ 232 (710)
.... ...+++.+++.++..+.+.+.+.... ..-..+.+..|++.++|.+- ++..+-.+
T Consensus 165 I~SR--c~~~~F~~l~~~~i~~~L~~i~~~eg-----i~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 165 IRSR--THHYPFRLLPPRTMRALIARICEQEG-----VVVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred HHHh--ceEEEeeCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3322 27899999999999988888764321 11223567788888888763 44444443
No 130
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=9.6e-06 Score=89.92 Aligned_cols=190 Identities=13% Similarity=0.088 Sum_probs=107.0
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-++++|.+..++.| .+. .+.+.++|+.|+||||+|+.+++......... -...+......+.+.....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 45789999888877 333 45678999999999999999987631111100 0011222233333322111
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHh-----cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhh
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDHL-----KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAK 166 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~ 166 (710)
.....-... .....+++. .+.+.+ .+++-++|+|+++... ..+.+...+......+.+|+++.+ ..+..
T Consensus 89 ~d~~~i~~~--~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 89 VDVIEMDAA--SHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CeEEEEecc--ccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 100000000 011112222 222222 2456689999998764 466677777666566666665543 33333
Q ss_pred hccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 167 YCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 167 ~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
.... ....+++++++..+....+.+.+.... ..-..+.+..+++.++|.+..+
T Consensus 166 tI~S--R~~~i~f~~l~~~el~~~L~~~a~~eg-----l~i~~eal~~La~~s~Gdlr~a 218 (585)
T PRK14950 166 TILS--RCQRFDFHRHSVADMAAHLRKIAAAEG-----INLEPGALEAIARAATGSMRDA 218 (585)
T ss_pred HHHh--ccceeeCCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHH
Confidence 3222 226788999999999888887764321 1123467889999999988544
No 131
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.15 E-value=2.5e-05 Score=77.33 Aligned_cols=169 Identities=13% Similarity=0.168 Sum_probs=105.3
Q ss_pred CCCceeecccchhhc-------cC-CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHH
Q 005181 20 PHAGFSGKEDNNQLI-------QS-ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILK 91 (710)
Q Consensus 20 ~~~~~vGre~~~~~i-------~~-~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 91 (710)
..+.|-+||..+..+ .. -+..|.|+|-+|.|||.+++++.+.. . -..+|+++-..++.+.+...|+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHHH
Confidence 356788999999887 22 24567999999999999999998873 1 13589999999999999999999
Q ss_pred HHhhhcCCCCCccccc--hhHHHHHHHHHH--Hhc--CCceEEEEecCCCcchHHHHHH-----hcCCCCCCcEEEEEcC
Q 005181 92 EFHRVANQPAPVEIHD--MEEMELITTLRD--HLK--DKSYMVVFDDVWKIDFWGDVEY-----ALLDSKKCGRIIVTTR 160 (710)
Q Consensus 92 ~l~~~~~~~~~~~~~~--~~~~~~~~~~~~--~l~--~~~~LlvlDdv~~~~~~~~~~~-----~l~~~~~~~~ilvTtR 160 (710)
........+ ...+. ....+....+.+ ... ++.+++|||+++...+++...- .-.-.......|+++.
T Consensus 79 ~~~~~d~dg--~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 79 KSQLADKDG--DKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HhccCCCch--hhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 986322111 11111 122233333333 222 3589999999988765444221 1111112234555554
Q ss_pred chhhhhhc--cCCCCcceEEccCCCchhHHHHHHHHH
Q 005181 161 HMNVAKYC--KSSSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 161 ~~~~~~~~--~~~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
...-.... .......++..+..+.+|..+++.+.-
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 43211111 122233567788899999999987663
No 132
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=3.9e-05 Score=81.95 Aligned_cols=191 Identities=13% Similarity=0.062 Sum_probs=100.8
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-++++|.+..+..+ .+. .+.+.++|+.|+||||+|+.+++.......... ...+........+...-.
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~------~~~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTED------QEPCNQCASCKEISSGTS 89 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccC------CCCCcccHHHHHHhcCCC
Confidence 45789999888877 333 467889999999999999999876311110000 000000000000000000
Q ss_pred hhc-CCCCCccccchhHHHHHHHHHH-HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEc-Cchhhhhhcc
Q 005181 95 RVA-NQPAPVEIHDMEEMELITTLRD-HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTT-RHMNVAKYCK 169 (710)
Q Consensus 95 ~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTt-R~~~~~~~~~ 169 (710)
... ...........+..++.+.+.. -..+++-++|+|+++... ..+.+...+......+.+|++| +...+.....
T Consensus 90 ~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~ 169 (451)
T PRK06305 90 LDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTIL 169 (451)
T ss_pred CceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHH
Confidence 000 0000000000011111111111 112456788999998764 4555666776655566666555 3333333322
Q ss_pred CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 170 SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 170 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
. +...++++++++++....+.+.+... + ..-.++.++.|++.++|.+-
T Consensus 170 s--Rc~~v~f~~l~~~el~~~L~~~~~~e--g---~~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 170 S--RCQKMHLKRIPEETIIDKLALIAKQE--G---IETSREALLPIARAAQGSLR 217 (451)
T ss_pred H--hceEEeCCCCCHHHHHHHHHHHHHHc--C---CCCCHHHHHHHHHHcCCCHH
Confidence 2 12689999999999998888775322 1 11234678889999999764
No 133
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.14 E-value=5.1e-05 Score=78.17 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=81.6
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-++++|.+...+.+ .+. ...+.++|++|+||||+|+.+++.. .. .+++++.+. .. ...+++.+..+.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~-~~~i~~~l~~~~ 92 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CR-IDFVRNRLTRFA 92 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-cc-HHHHHHHHHHHH
Confidence 36789999887777 333 4677779999999999999998762 21 234555443 11 111111111111
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCc-c--hHHHHHHhcCCCCCCcEEEEEcCchh-hhhhccC
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKI-D--FWGDVEYALLDSKKCGRIIVTTRHMN-VAKYCKS 170 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~-~--~~~~~~~~l~~~~~~~~ilvTtR~~~-~~~~~~~ 170 (710)
.. . .+.+.+-++|+|+++.. . ..+.+...+.....++.+|+||.... +......
T Consensus 93 ~~--------------------~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 93 ST--------------------V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred Hh--------------------h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 00 0 01134557899999876 2 22334444555566778888886542 2222211
Q ss_pred CCCcceEEccCCCchhHHHHHHH
Q 005181 171 SSSVHVHELETLPPNEAWKLFCR 193 (710)
Q Consensus 171 ~~~~~~~~l~~l~~~ea~~l~~~ 193 (710)
....+.++..+.++...++..
T Consensus 151 --R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 --RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred --hceEEEeCCCCHHHHHHHHHH
Confidence 124677778888887766554
No 134
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=5.1e-07 Score=85.69 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=49.8
Q ss_pred cccEEecCCCCCccCc--ccc-cCcccceEEEecccccc---ccCcchhcccCCCEEEcCCCccccccccc-cccccCcE
Q 005181 429 LMKVLDLEDAPVDYLP--EGV-GNLFNLHYLSVKNTEVK---IIPKSIRNLLSLEILDLKNTLVSELPVEI-RNLKKLRY 501 (710)
Q Consensus 429 ~L~~L~l~~n~~~~l~--~~~-~~l~~L~~L~l~~n~i~---~lp~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~L~~ 501 (710)
-+..|.+.++.|.... ..| ..+.+++.|+|.+|.|+ .+-.-+.+|+.|++|+|++|.+...-..+ ..+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 4456667777765432 122 35678888899988887 34334678888888888887654332222 35567777
Q ss_pred EEccc
Q 005181 502 LMVYR 506 (710)
Q Consensus 502 L~l~~ 506 (710)
|.|.+
T Consensus 126 lVLNg 130 (418)
T KOG2982|consen 126 LVLNG 130 (418)
T ss_pred EEEcC
Confidence 77763
No 135
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=6.1e-05 Score=76.74 Aligned_cols=170 Identities=11% Similarity=0.063 Sum_probs=92.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCcc-ccchhHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVE-IHDMEEMELITT 116 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 116 (710)
...+.++|+.|+||||+|..++...-....... .++......+.+...-........+.. ......+++.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~- 93 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE- 93 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH-
Confidence 567889999999999999999876322111100 011111111111111000000000000 01112223332
Q ss_pred HHHHh-----cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhhccCCCCcceEEccCCCchhHH
Q 005181 117 LRDHL-----KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEAW 188 (710)
Q Consensus 117 ~~~~l-----~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~~~~~~~~~~~~l~~l~~~ea~ 188 (710)
+.+.+ .+++=++|+|+++... ....+...+-..+.++.+|++|.+. .+....... -+.+.+.+++.+++.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR--c~~~~~~~~~~~~~~ 171 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR--CQQQACPLPSNEESL 171 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh--ceeeeCCCcCHHHHH
Confidence 22222 2333445679998875 5566777777766677777777664 444443322 268999999999999
Q ss_pred HHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 189 KLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
+.+....... ..+.+..++..++|.|...
T Consensus 172 ~~L~~~~~~~---------~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 172 QWLQQALPES---------DERERIELLTLAGGSPLRA 200 (328)
T ss_pred HHHHHhcccC---------ChHHHHHHHHHcCCCHHHH
Confidence 9987763111 1245667788999999644
No 136
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=6.5e-05 Score=80.81 Aligned_cols=191 Identities=13% Similarity=0.029 Sum_probs=100.4
Q ss_pred Cceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhh
Q 005181 22 AGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHR 95 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (710)
.+++|.+..++.+ .+. .+.+.++|+.|+||||+|+.++........-. ..++........+...-..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~-------~~pc~~c~nc~~i~~g~~~ 88 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE-------GEPCGKCENCVEIDKGSFP 88 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC-------CCCCCccHHHHHHhcCCCC
Confidence 5688988888777 323 45667899999999999999887631100000 0000000000000000000
Q ss_pred hcCCCCCccccch-hHHHHHHHHHH-HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE-EcCchhhhhhccC
Q 005181 96 VANQPAPVEIHDM-EEMELITTLRD-HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV-TTRHMNVAKYCKS 170 (710)
Q Consensus 96 ~~~~~~~~~~~~~-~~~~~~~~~~~-~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv-TtR~~~~~~~~~~ 170 (710)
....-..++.... +...+.+.+.. -..+++-++|+|+++... ....+...+...+....+|+ |++...+......
T Consensus 89 d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~S 168 (486)
T PRK14953 89 DLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILS 168 (486)
T ss_pred cEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHH
Confidence 0000000000001 11122222211 113456799999998764 45566666666555555555 4444344332222
Q ss_pred CCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 171 SSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 171 ~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
. ...+.+.+++.++....+...+.... ....++.+..+++.++|.+..+
T Consensus 169 R--c~~i~f~~ls~~el~~~L~~i~k~eg-----i~id~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 169 R--CQRFIFSKPTKEQIKEYLKRICNEEK-----IEYEEKALDLLAQASEGGMRDA 217 (486)
T ss_pred h--ceEEEcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHH
Confidence 1 26899999999999988888764321 1223466788888999976543
No 137
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.10 E-value=5.6e-05 Score=72.00 Aligned_cols=171 Identities=24% Similarity=0.240 Sum_probs=97.7
Q ss_pred CCceeecccchhhc----------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI----------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTIL 90 (710)
Q Consensus 21 ~~~~vGre~~~~~i----------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (710)
=++|||.+...+.+ .+..-.+.++||+|.||||||.-+++. .... +-++....-... .
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn----~k~tsGp~leK~---g--- 92 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE--LGVN----LKITSGPALEKP---G--- 92 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCC----eEecccccccCh---h---
Confidence 46799999888776 555688999999999999999999887 3222 222211111110 1
Q ss_pred HHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-hHHHHHHh-cCCC--------CC---------
Q 005181 91 KEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-FWGDVEYA-LLDS--------KK--------- 151 (710)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-~~~~~~~~-l~~~--------~~--------- 151 (710)
+++..+ .-++... ++++|.+.... ..+.++.+ +.++ ++
T Consensus 93 ---------------------DlaaiL-t~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 93 ---------------------DLAAIL-TNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ---------------------hHHHHH-hcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 111111 1122222 45567775543 11121111 1111 12
Q ss_pred --CcEEEEEcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHH
Q 005181 152 --CGRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAV 229 (710)
Q Consensus 152 --~~~ilvTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 229 (710)
.+-|=-|||--.+..-.+ .....+..++..+.+|-.++..+.+.. ....-..+.+.+|+++..|-|- ++
T Consensus 150 ppFTLIGATTr~G~lt~PLr-dRFGi~~rlefY~~~eL~~Iv~r~a~~-----l~i~i~~~~a~eIA~rSRGTPR---IA 220 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLR-DRFGIIQRLEFYTVEELEEIVKRSAKI-----LGIEIDEEAALEIARRSRGTPR---IA 220 (332)
T ss_pred CCeeEeeeccccccccchhH-HhcCCeeeeecCCHHHHHHHHHHHHHH-----hCCCCChHHHHHHHHhccCCcH---HH
Confidence 222334888643332222 112257889999999999999998832 2223345789999999999994 44
Q ss_pred HhhhcC
Q 005181 230 GGLLST 235 (710)
Q Consensus 230 ~~~l~~ 235 (710)
.+++++
T Consensus 221 nRLLrR 226 (332)
T COG2255 221 NRLLRR 226 (332)
T ss_pred HHHHHH
Confidence 555533
No 138
>PRK06620 hypothetical protein; Validated
Probab=98.10 E-value=2.3e-05 Score=74.85 Aligned_cols=134 Identities=15% Similarity=0.006 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHH
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLR 118 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (710)
+.+.|||++|+|||+|++.+++.. . ..++..... . .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~-----~~~~~~~~~-~------------------------------~------ 80 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--N-----AYIIKDIFF-N------------------------------E------ 80 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--C-----CEEcchhhh-c------------------------------h------
Confidence 568999999999999999988763 1 122220000 0 0
Q ss_pred HHhcCCceEEEEecCCCcchHHHHHHhcCC-CCCCcEEEEEcCchhh-------hhhccCCCCcceEEccCCCchhHHHH
Q 005181 119 DHLKDKSYMVVFDDVWKIDFWGDVEYALLD-SKKCGRIIVTTRHMNV-------AKYCKSSSSVHVHELETLPPNEAWKL 190 (710)
Q Consensus 119 ~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~-~~~~~~ilvTtR~~~~-------~~~~~~~~~~~~~~l~~l~~~ea~~l 190 (710)
+.. +..-++++||++..++ ..+...+.. ...|..+|+|++.+.. ...+. +..+++++++++++-..+
T Consensus 81 ~~~-~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~---~gl~~~l~~pd~~~~~~~ 155 (214)
T PRK06620 81 EIL-EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIK---SVLSILLNSPDDELIKIL 155 (214)
T ss_pred hHH-hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHh---CCceEeeCCCCHHHHHHH
Confidence 001 1234788899985542 122222211 1345678888875322 12222 225899999999998888
Q ss_pred HHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 191 FCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
+.+.+... + ..--++.++-|++.+.|.--.+
T Consensus 156 l~k~~~~~--~---l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 156 IFKHFSIS--S---VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHHHHHHc--C---CCCCHHHHHHHHHHccCCHHHH
Confidence 88876421 1 1123466777777777654433
No 139
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.09 E-value=5.6e-06 Score=83.85 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=58.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC--CHHHHHHHHHHHHhhhcCCCCCccccchhHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY--KKNDLLRTILKEFHRVANQPAPVEIHDMEEME 112 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 112 (710)
-+.-..++|+|++|+||||||+++++.... ++|+.++|+.+.... ...++++.+...+.... -..++..+-.-...
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st-~d~~~~~~~~~a~~ 243 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST-FDEPAERHVQVAEM 243 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC-CCCCHHHHHHHHHH
Confidence 344456779999999999999999988533 389999999887765 44455555542111110 01111111000011
Q ss_pred HHHHHHHH-hcCCceEEEEecCCCc
Q 005181 113 LITTLRDH-LKDKSYMVVFDDVWKI 136 (710)
Q Consensus 113 ~~~~~~~~-l~~~~~LlvlDdv~~~ 136 (710)
+.+..+.. -.+++++|++|++...
T Consensus 244 ~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 244 VIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEEChHHH
Confidence 22222222 3579999999999654
No 140
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=3.4e-06 Score=57.34 Aligned_cols=38 Identities=34% Similarity=0.583 Sum_probs=18.2
Q ss_pred cceEEEeccccccccCcchhcccCCCEEEcCCCccccc
Q 005181 452 NLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSEL 489 (710)
Q Consensus 452 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~ 489 (710)
+|++|++++|.|+.+|+.+++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555555544455555555555555544443
No 141
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=1.3e-05 Score=82.28 Aligned_cols=134 Identities=22% Similarity=0.217 Sum_probs=75.0
Q ss_pred hcccccccEEecCCCCCccCcccccCcccceEEEecc-ccccccCcchhcccCCCEEEcCCC-ccccccccccccccCcE
Q 005181 424 IANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKN-TEVKIIPKSIRNLLSLEILDLKNT-LVSELPVEIRNLKKLRY 501 (710)
Q Consensus 424 ~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~-n~i~~lp~~~~~l~~L~~L~l~~n-~~~~~~~~~~~l~~L~~ 501 (710)
+..+.+++.|++++|.++.+|. -..+|+.|.+++ +.++.+|..+ ..+|++|++++| .+..+|.. |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cce
Confidence 4446778888888888777772 234688888876 3455666555 357888888876 56666643 555
Q ss_pred EEccccccccCccCCchhhhhccCCCCcCccEEEEeecC----CCCCccccCCCCccEEEEEeeccCCcccccccccccc
Q 005181 502 LMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNM----KKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNL 577 (710)
Q Consensus 502 L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~----~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 577 (710)
|++.. +... .+..+|++|+.|.+.++. ..+|.. --++|+.|++++|.... .|..+. .+|
T Consensus 117 L~L~~-n~~~-----------~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SL 179 (426)
T PRK15386 117 LEIKG-SATD-----------SIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESL 179 (426)
T ss_pred EEeCC-CCCc-----------ccccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccC
Confidence 55552 2211 123344566666664321 111110 11457777776666433 122221 466
Q ss_pred ceEEeecc
Q 005181 578 LELRLTGT 585 (710)
Q Consensus 578 ~~L~L~~n 585 (710)
+.|.++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 66666544
No 142
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.08 E-value=2.2e-05 Score=83.84 Aligned_cols=157 Identities=16% Similarity=0.154 Sum_probs=87.4
Q ss_pred Cceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccc---cCcCcEEEEEeCCCC
Q 005181 22 AGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLK---THFNCRAWITVGKEY 80 (710)
Q Consensus 22 ~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~---~~f~~~~~v~~~~~~ 80 (710)
+++.|.+..++.| ....+-+.|+||+|+|||++|+++++..... .......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 5678888887766 1235678999999999999999999873211 11223455554432
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHh-cCCceEEEEecCCCcc---------h-----HHHHHHh
Q 005181 81 KKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHL-KDKSYMVVFDDVWKID---------F-----WGDVEYA 145 (710)
Q Consensus 81 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDdv~~~~---------~-----~~~~~~~ 145 (710)
+++.....+ .......+....++.. .+++++++||+++..- + +..+...
T Consensus 261 ---eLl~kyvGe-------------te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 261 ---ELLNKYVGE-------------TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred ---hhcccccch-------------HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 111110000 0001112223333322 3478999999997531 1 1233333
Q ss_pred cCCCC--CCcEEEEEcCchhhhhhc--cCCCCcceEEccCCCchhHHHHHHHHH
Q 005181 146 LLDSK--KCGRIIVTTRHMNVAKYC--KSSSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 146 l~~~~--~~~~ilvTtR~~~~~~~~--~~~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
+.... .+-.||.||-..+..... +.......+++++.+.++..++|..+.
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 33222 233445565544333221 222334578999999999999999986
No 143
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=7.4e-05 Score=80.33 Aligned_cols=190 Identities=11% Similarity=0.047 Sum_probs=104.4
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
=++++|-+...+.+ .+. .+++.++|+.|+||||+|+.+++..-.....+. .++........+.....
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHhhcCC
Confidence 35688988777666 333 456689999999999999988776311111000 00000011111111000
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHH----hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhh
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDH----LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKY 167 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~ 167 (710)
......... .....+++.+.+.+. ..+++-++|+|+++... ....+...+-..+..+++|++|.+. .+...
T Consensus 86 ~dv~eldaa--s~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~t 163 (535)
T PRK08451 86 IDIIEMDAA--SNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPAT 163 (535)
T ss_pred CeEEEeccc--cccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchH
Confidence 000000000 000122333333221 11355688999998775 4566777776666667766666553 33322
Q ss_pred ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 168 CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 168 ~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
... +...+++.+++.++..+.+.+.+.... ..-.++.++.|++.++|.+..+
T Consensus 164 I~S--Rc~~~~F~~Ls~~ei~~~L~~Il~~EG-----i~i~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 164 ILS--RTQHFRFKQIPQNSIISHLKTILEKEG-----VSYEPEALEILARSGNGSLRDT 215 (535)
T ss_pred HHh--hceeEEcCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCcHHHH
Confidence 222 237899999999999998887764321 1123467889999999987433
No 144
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=3.9e-05 Score=84.90 Aligned_cols=189 Identities=12% Similarity=0.087 Sum_probs=103.6
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
=++++|.+..++.+ .+. .+.+.++|+.|+||||+|+.++........... ...+........+-..-.
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~------~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTAD------GEACNECESCVAFNEQRS 89 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCC------CCCCCcchHHHHHhcCCC
Confidence 35789988888777 333 466889999999999999998775311110000 000000011111110000
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHH----hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE-EcCchhhhhh
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDH----LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV-TTRHMNVAKY 167 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv-TtR~~~~~~~ 167 (710)
.....-... .....+++...+.+. ..+++=++|+|+++... .+..+...+...+..+.+|+ |++...+...
T Consensus 90 ~n~~~ld~~--~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~t 167 (614)
T PRK14971 90 YNIHELDAA--SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPT 167 (614)
T ss_pred CceEEeccc--ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHH
Confidence 000000000 000111222222111 12345588999998875 46677777777666666555 5555555544
Q ss_pred ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 168 CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 168 ~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
.... ...+++++++.++....+.+.+.... .....+.+..|++.++|..-
T Consensus 168 I~SR--c~iv~f~~ls~~ei~~~L~~ia~~eg-----i~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 168 ILSR--CQIFDFNRIQVADIVNHLQYVASKEG-----ITAEPEALNVIAQKADGGMR 217 (614)
T ss_pred HHhh--hheeecCCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHH
Confidence 3322 27899999999999988887764321 11223568889999998664
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.07 E-value=0.00015 Score=78.60 Aligned_cols=157 Identities=10% Similarity=0.093 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHH
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLR 118 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (710)
.-+.|+|..|+|||.|+.++++..........++|++. .++..++...+... ....++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~----------------~~~~f~ 372 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG----------------KGDSFR 372 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc----------------cHHHHH
Confidence 45899999999999999999987322112235677653 33444444333211 122344
Q ss_pred HHhcCCceEEEEecCCCcc---hH-HHHHHhcCCC-CCCcEEEEEcCch---------hhhhhccCCCCcceEEccCCCc
Q 005181 119 DHLKDKSYMVVFDDVWKID---FW-GDVEYALLDS-KKCGRIIVTTRHM---------NVAKYCKSSSSVHVHELETLPP 184 (710)
Q Consensus 119 ~~l~~~~~LlvlDdv~~~~---~~-~~~~~~l~~~-~~~~~ilvTtR~~---------~~~~~~~~~~~~~~~~l~~l~~ 184 (710)
+.+++- =+|||||++... .+ +.+...+... ..+..||+||... .+.... .+..+++|++.+.
T Consensus 373 ~~y~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf---~~GLvv~I~~PD~ 448 (617)
T PRK14086 373 RRYREM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRF---EWGLITDVQPPEL 448 (617)
T ss_pred HHhhcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhh---hcCceEEcCCCCH
Confidence 444433 468889997652 11 2233322221 2345688888752 122222 2336899999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 185 NEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 185 ~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
+.-..++.+.+.... ..--.+.++-|++.+.+..-.|
T Consensus 449 EtR~aIL~kka~~r~-----l~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 449 ETRIAILRKKAVQEQ-----LNAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHHHHHHHhcC-----CCCCHHHHHHHHHhccCCHHHH
Confidence 999999999875321 1222466777777776665444
No 146
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.06 E-value=9.8e-06 Score=93.65 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=82.4
Q ss_pred Cceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcc---cccCc-CcEEEEEeCCCCCHHHHHHHHHHH
Q 005181 22 AGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEG---LKTHF-NCRAWITVGKEYKKNDLLRTILKE 92 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~---~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~ 92 (710)
+.++||+++++++ ......+.++|++|+|||++|+.++.... ..... +..+|. ++. ..++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l~~--------~~l~a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-LDI--------GLLLA- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-eeH--------HHHhc-
Confidence 5689999999998 44556778999999999999999988731 11111 233442 211 01110
Q ss_pred HhhhcCCCCCccccchhHHHHHHHHHHHh-cCCceEEEEecCCCcc---------hHHHHHHhcCCCCCCcEEEEEcCch
Q 005181 93 FHRVANQPAPVEIHDMEEMELITTLRDHL-KDKSYMVVFDDVWKID---------FWGDVEYALLDSKKCGRIIVTTRHM 162 (710)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDdv~~~~---------~~~~~~~~l~~~~~~~~ilvTtR~~ 162 (710)
... .. .+.++....+.+.+ ..++.+|++|+++..- +...+..+....+.-..|..||.++
T Consensus 249 --g~~-------~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~e 318 (821)
T CHL00095 249 --GTK-------YR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDE 318 (821)
T ss_pred --cCC-------Cc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHH
Confidence 000 00 01122222232222 3467999999995321 2333443333333232344455443
Q ss_pred h---hhhhccCCCCcceEEccCCCchhHHHHHHHH
Q 005181 163 N---VAKYCKSSSSVHVHELETLPPNEAWKLFCRK 194 (710)
Q Consensus 163 ~---~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~ 194 (710)
. +...-........+.++..+.++...++...
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 2 1111111223367889999999988888754
No 147
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.06 E-value=5.2e-05 Score=79.31 Aligned_cols=169 Identities=12% Similarity=0.094 Sum_probs=93.0
Q ss_pred Cceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 22 AGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 22 ~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
.++.|.+...+.| ....+.+.|+|++|+|||++|+++++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEeh------H
Confidence 4577877776655 134578999999999999999999987 33222 22211 1
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc------------h----HHHHHHhcC
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID------------F----WGDVEYALL 147 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~------------~----~~~~~~~l~ 147 (710)
.+ ....... ....+.+.+.......+.++++|+++... . +..+...+.
T Consensus 214 ~l----~~k~~ge------------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld 277 (398)
T PTZ00454 214 EF----VQKYLGE------------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD 277 (398)
T ss_pred HH----HHHhcch------------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh
Confidence 11 1111000 11122222333334578999999986431 1 112222222
Q ss_pred C--CCCCcEEEEEcCchhhhhh--ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 148 D--SKKCGRIIVTTRHMNVAKY--CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 148 ~--~~~~~~ilvTtR~~~~~~~--~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
. ...+..+|.||...+.... .........++++..+.++..++|..+..... ... .....++++.+.|+-
T Consensus 278 ~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~--l~~----dvd~~~la~~t~g~s 351 (398)
T PTZ00454 278 GFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN--LSE----EVDLEDFVSRPEKIS 351 (398)
T ss_pred ccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC--CCc----ccCHHHHHHHcCCCC
Confidence 2 1234467777776543322 22223346789999999998899987763221 111 123456666776653
No 148
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.04 E-value=1.4e-05 Score=92.58 Aligned_cols=151 Identities=13% Similarity=0.134 Sum_probs=82.2
Q ss_pred Cceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCccccc---C-cCc-EEEEEeCCCCCHHHHHHHHHH
Q 005181 22 AGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKT---H-FNC-RAWITVGKEYKKNDLLRTILK 91 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~---~-f~~-~~~v~~~~~~~~~~~~~~i~~ 91 (710)
+.++||+.++.++ ......+.|+|++|+|||++|+.++++..... . ... ++++..+. +..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~----------l~a 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA----------LIA 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH----------Hhh
Confidence 5699999999988 44567788999999999999999988731110 0 112 23322111 100
Q ss_pred HHhhhcCCCCCccccchhHHHHHHHHHHHh-c-CCceEEEEecCCCcc---------hHHHHHHhcCCCCCCc-EEE-EE
Q 005181 92 EFHRVANQPAPVEIHDMEEMELITTLRDHL-K-DKSYMVVFDDVWKID---------FWGDVEYALLDSKKCG-RII-VT 158 (710)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~-~~~~LlvlDdv~~~~---------~~~~~~~~l~~~~~~~-~il-vT 158 (710)
.... . .+.+.....+...+ + +++.+|++|+++..- +...+..+.. ..|. ++| .|
T Consensus 243 ~~~~----------~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaT 309 (852)
T TIGR03346 243 GAKY----------R-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGAT 309 (852)
T ss_pred cchh----------h-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeC
Confidence 0000 0 01111222222222 2 468999999997542 1222332222 2333 333 35
Q ss_pred cCchh---hhhhccCCCCcceEEccCCCchhHHHHHHHHH
Q 005181 159 TRHMN---VAKYCKSSSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 159 tR~~~---~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
|.++. +..........+.+.++..+.++...++....
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 55432 11111122234678899999999999997764
No 149
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.04 E-value=2.9e-05 Score=86.21 Aligned_cols=173 Identities=16% Similarity=0.100 Sum_probs=87.5
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCc---C--cEEEEEeCCC-CCHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHF---N--CRAWITVGKE-YKKNDLLRTI 89 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f---~--~~~~v~~~~~-~~~~~~~~~i 89 (710)
-++++|++..++.+ ......+.|+|++|+||||+|+.+++.......+ . ..+.+++... .+.......+
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 35689998888776 4556789999999999999999987653222221 1 2233332221 1122211111
Q ss_pred HH---------------HHhhhcCCC--------C---CccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHH
Q 005181 90 LK---------------EFHRVANQP--------A---PVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGD 141 (710)
Q Consensus 90 ~~---------------~l~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~ 141 (710)
+. ..+...... . .......+ ......+...+.++++.++-|+.|..+ .|..
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 10 000000000 0 00011111 123445555555566666655444332 3444
Q ss_pred HHHhcCCCCCCcEEEE--EcCchhh-hhhccCCCCcceEEccCCCchhHHHHHHHHHc
Q 005181 142 VEYALLDSKKCGRIIV--TTRHMNV-AKYCKSSSSVHVHELETLPPNEAWKLFCRKAF 196 (710)
Q Consensus 142 ~~~~l~~~~~~~~ilv--TtR~~~~-~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 196 (710)
+...+....+...+++ ||++... ..... ++...+.+.+++.+|...++.+.+.
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLr--SR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALR--SRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHH--hceeEEEeCCCCHHHHHHHHHHHHH
Confidence 4433333334434555 6665432 11111 1225678999999999999998874
No 150
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.03 E-value=2.2e-05 Score=90.56 Aligned_cols=152 Identities=12% Similarity=0.096 Sum_probs=82.6
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCccccc---Cc-C-cEEEEEeCCCCCHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKT---HF-N-CRAWITVGKEYKKNDLLRTIL 90 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~---~f-~-~~~~v~~~~~~~~~~~~~~i~ 90 (710)
-+.++||+.++.++ ......+.++|++|+|||++|+.++....... .. . .++++..+.-..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a--------- 247 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA--------- 247 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh---------
Confidence 35699999999987 44556788999999999999999988731110 00 1 233333322100
Q ss_pred HHHhhhcCCCCCccccchhHHHHHH-HHHHHh-cCCceEEEEecCCCcc---------hHHHHHHhcCCCCCCc-EEEE-
Q 005181 91 KEFHRVANQPAPVEIHDMEEMELIT-TLRDHL-KDKSYMVVFDDVWKID---------FWGDVEYALLDSKKCG-RIIV- 157 (710)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l-~~~~~LlvlDdv~~~~---------~~~~~~~~l~~~~~~~-~ilv- 157 (710)
.. ... .+.+.... .+.+.. .+.+.+|++|+++... +...+..+.. ..|. ++|-
T Consensus 248 -g~----------~~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~Iga 313 (857)
T PRK10865 248 -GA----------KYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGA 313 (857)
T ss_pred -cc----------chh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEc
Confidence 00 000 01111122 222211 2468999999997542 2233333322 2333 3333
Q ss_pred EcCchh---hhhhccCCCCcceEEccCCCchhHHHHHHHHH
Q 005181 158 TTRHMN---VAKYCKSSSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 158 TtR~~~---~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
||.++. +..........+.+.+...+.++..+++....
T Consensus 314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 565542 11111122233567788889999999987664
No 151
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=4.6e-06 Score=56.68 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=34.9
Q ss_pred ccccEEecCCCCCccCcccccCcccceEEEeccccccccC
Q 005181 428 KLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIP 467 (710)
Q Consensus 428 ~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp 467 (710)
++|++|++++|.|+.+|..+++|++|+.|++++|.++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4799999999999999888999999999999999998764
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=7.9e-05 Score=75.49 Aligned_cols=188 Identities=15% Similarity=0.140 Sum_probs=106.5
Q ss_pred Cceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCccc-------------ccCcCcEEEEEeCCCCCH
Q 005181 22 AGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGL-------------KTHFNCRAWITVGKEYKK 82 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~-------------~~~f~~~~~v~~~~~~~~ 82 (710)
++++|.+...+.+ .+. .....++|+.|+||+++|.++++..-. ...++.+.|+.-......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 3678888888777 333 589999999999999999998765311 122233455432100000
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhc-----CCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEE
Q 005181 83 NDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLK-----DKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRI 155 (710)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~i 155 (710)
...-...++..+.. .... .....+++ +.+.+.+. +.+=++|+|+++... ....++..+-..+ .+.+
T Consensus 84 ~~~~~~~~~~~~~~--~~~~---~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 84 KLITASEAEEAGLK--RKAP---PQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cccchhhhhhcccc--cccc---ccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000001111100 0000 11112222 23333332 456789999998875 4556777776655 4444
Q ss_pred E-EEcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 156 I-VTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 156 l-vTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
| +|+....+....... -+.+.+.++++++..+.+.+...... .......++..++|.|...
T Consensus 157 ILi~~~~~~Ll~TI~SR--cq~i~f~~l~~~~~~~~L~~~~~~~~--------~~~~~~~l~~~a~Gs~~~a 218 (314)
T PRK07399 157 ILIAPSPESLLPTIVSR--CQIIPFYRLSDEQLEQVLKRLGDEEI--------LNINFPELLALAQGSPGAA 218 (314)
T ss_pred EEEECChHhCcHHHHhh--ceEEecCCCCHHHHHHHHHHhhcccc--------chhHHHHHHHHcCCCHHHH
Confidence 4 455555555554433 27999999999999999998752210 0112467888999999654
No 153
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=5.4e-05 Score=83.77 Aligned_cols=192 Identities=13% Similarity=0.059 Sum_probs=105.6
Q ss_pred CCceeecccchhhc-----cC-CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QS-ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~-~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-.+++|.+...+.| .+ -...+.++|+.|+||||+|+.++...-.... .... ...+......+.+.....
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~-~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNS-DKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCc-CCCC----CCCCcccHHHHHHhcCCC
Confidence 35788988888777 22 2467889999999999999999887421111 1100 011222223333322221
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHH----hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhhh
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDH----LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAKY 167 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~~ 167 (710)
......... .....+++.+.+... ..+++-++|+|+++... ....+...+......+.+|++|.+ ..+...
T Consensus 90 ~D~~ei~~~--~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEIDAA--SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEEecc--ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 110000000 011112222222111 12445688999998774 466677777665555555544443 333333
Q ss_pred ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 168 CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 168 ~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
.... -..+++.+++.++....+.+.+.... .....+.+..|++.++|.+..+
T Consensus 168 IrSR--c~~~~f~~l~~~ei~~~L~~ia~keg-----i~is~~al~~La~~s~G~lr~A 219 (620)
T PRK14948 168 IISR--CQRFDFRRIPLEAMVQHLSEIAEKES-----IEIEPEALTLVAQRSQGGLRDA 219 (620)
T ss_pred HHhh--eeEEEecCCCHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHcCCCHHHH
Confidence 3221 26788999999998888877664321 1112356888999999987544
No 154
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=2.2e-07 Score=77.80 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=49.8
Q ss_pred hhcccccccEEecCCCCCccCccccc-CcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcE
Q 005181 423 SIANFKLMKVLDLEDAPVDYLPEGVG-NLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRY 501 (710)
Q Consensus 423 ~~~~~~~L~~L~l~~n~~~~l~~~~~-~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 501 (710)
.+.+...|+..+|++|.+..+|..|. +.+.++.|++++|.|+.+|+.+..++.|+.|+++.|.+...|..+..+.+|-.
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 34445555556666666666655544 34456666666666666666666666666666666666666665555555555
Q ss_pred EEcc
Q 005181 502 LMVY 505 (710)
Q Consensus 502 L~l~ 505 (710)
|+..
T Consensus 128 Lds~ 131 (177)
T KOG4579|consen 128 LDSP 131 (177)
T ss_pred hcCC
Confidence 5554
No 155
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.97 E-value=0.00013 Score=73.21 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=71.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHH
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRD 119 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (710)
-+.++|++|+|||++|+.+++.....+.....-|+.++. .+ +...+... +.......+.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~------------~~~~~~~~~~~ 119 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGH------------TAPKTKEILKR 119 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhccc------------chHHHHHHHHH
Confidence 688999999999999988776532112111112333321 11 22211111 00111222222
Q ss_pred HhcCCceEEEEecCCCc-----------chHHHHHHhcCCCCCCcEEEEEcCchhhhhhccC-----CCCcceEEccCCC
Q 005181 120 HLKDKSYMVVFDDVWKI-----------DFWGDVEYALLDSKKCGRIIVTTRHMNVAKYCKS-----SSSVHVHELETLP 183 (710)
Q Consensus 120 ~l~~~~~LlvlDdv~~~-----------~~~~~~~~~l~~~~~~~~ilvTtR~~~~~~~~~~-----~~~~~~~~l~~l~ 183 (710)
. ..-+|++|+++.. +..+.+...+.....+.+||.++........... ......+.+++++
T Consensus 120 a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~ 196 (284)
T TIGR02880 120 A---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYS 196 (284)
T ss_pred c---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcC
Confidence 2 3358899999743 1233445555554455566666654322111110 0112578999999
Q ss_pred chhHHHHHHHHHcC
Q 005181 184 PNEAWKLFCRKAFG 197 (710)
Q Consensus 184 ~~ea~~l~~~~~~~ 197 (710)
.+|...++...+..
T Consensus 197 ~edl~~I~~~~l~~ 210 (284)
T TIGR02880 197 EAELLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888743
No 156
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=9.5e-05 Score=72.86 Aligned_cols=168 Identities=13% Similarity=0.104 Sum_probs=97.4
Q ss_pred Cceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 22 AGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 22 ~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
.++-|-++.+++| -..++-|.+|||+|.|||-||+++|++ .... |+.+..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~At-----FIrvvg----- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDAT-----FIRVVG----- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCce-----EEEecc-----
Confidence 3567777777776 344678889999999999999999998 4443 444432
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHh-cCCceEEEEecCCCcc----------------hHHHHHHhc
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHL-KDKSYMVVFDDVWKID----------------FWGDVEYAL 146 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDdv~~~~----------------~~~~~~~~l 146 (710)
.+++.+..+.+. -+...+-+.- ...+.++++|.+|... .+-+++..+
T Consensus 219 ---SElVqKYiGEGa-------------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 219 ---SELVQKYIGEGA-------------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred ---HHHHHHHhccch-------------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc
Confidence 233333322210 1122222222 3467999999997531 122233344
Q ss_pred CCCC--CCcEEEEEcCchhhhh--hccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC
Q 005181 147 LDSK--KCGRIIVTTRHMNVAK--YCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL 222 (710)
Q Consensus 147 ~~~~--~~~~ilvTtR~~~~~~--~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 222 (710)
.-+. ..-|||..|-..++.. ..++....+.++++.-+.+.-.++|.-++..-.-. . .-..+.+++.+.|.
T Consensus 283 DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~--~----dvd~e~la~~~~g~ 356 (406)
T COG1222 283 DGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA--D----DVDLELLARLTEGF 356 (406)
T ss_pred cCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc--c----CcCHHHHHHhcCCC
Confidence 4333 2237887665544332 23445555788998777777778888887432211 1 11255666666665
Q ss_pred c
Q 005181 223 P 223 (710)
Q Consensus 223 P 223 (710)
-
T Consensus 357 s 357 (406)
T COG1222 357 S 357 (406)
T ss_pred c
Confidence 4
No 157
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.97 E-value=5.2e-05 Score=67.69 Aligned_cols=89 Identities=12% Similarity=0.001 Sum_probs=50.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
.+.+.|+|++|+||||+|+.++... ......++++..+........... ...... .............+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~ 70 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL---LIIVGG------KKASGSGELRLRLA 70 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH---hhhhhc------cCCCCCHHHHHHHH
Confidence 4678999999999999999999883 333245677765544332222111 000000 00111112233344
Q ss_pred HHHhcCC-ceEEEEecCCCcc
Q 005181 118 RDHLKDK-SYMVVFDDVWKID 137 (710)
Q Consensus 118 ~~~l~~~-~~LlvlDdv~~~~ 137 (710)
.+..+.. ..++++|+++...
T Consensus 71 ~~~~~~~~~~viiiDei~~~~ 91 (148)
T smart00382 71 LALARKLKPDVLILDEITSLL 91 (148)
T ss_pred HHHHHhcCCCEEEEECCcccC
Confidence 4444443 4999999998865
No 158
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.95 E-value=0.00045 Score=71.21 Aligned_cols=132 Identities=14% Similarity=0.145 Sum_probs=83.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcC--cEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFN--CRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~--~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
...-+.|||+.|.|||.|+.++++. ...... .++++ +.+....+++..+... -.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~------~se~f~~~~v~a~~~~----------------~~ 167 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL------TSEDFTNDFVKALRDN----------------EM 167 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec------cHHHHHHHHHHHHHhh----------------hH
Confidence 3688999999999999999999998 444444 45553 3445555555554332 24
Q ss_pred HHHHHHhcCCceEEEEecCCCcc---h-HHHHHHhcCCC-CCCcEEEEEcCch---------hhhhhccCCCCcceEEcc
Q 005181 115 TTLRDHLKDKSYMVVFDDVWKID---F-WGDVEYALLDS-KKCGRIIVTTRHM---------NVAKYCKSSSSVHVHELE 180 (710)
Q Consensus 115 ~~~~~~l~~~~~LlvlDdv~~~~---~-~~~~~~~l~~~-~~~~~ilvTtR~~---------~~~~~~~~~~~~~~~~l~ 180 (710)
+.+++.. .-=++++||++-.. . -+.+...+... ..|..||+|++.. ++...... ..++++.
T Consensus 168 ~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~---Gl~~~I~ 242 (408)
T COG0593 168 EKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW---GLVVEIE 242 (408)
T ss_pred HHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc---eeEEeeC
Confidence 4566655 33378899997532 1 12222222211 2333788888652 22222223 3789999
Q ss_pred CCCchhHHHHHHHHHcC
Q 005181 181 TLPPNEAWKLFCRKAFG 197 (710)
Q Consensus 181 ~l~~~ea~~l~~~~~~~ 197 (710)
+.+.+....++.+.+..
T Consensus 243 ~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 243 PPDDETRLAILRKKAED 259 (408)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999997643
No 159
>CHL00181 cbbX CbbX; Provisional
Probab=97.95 E-value=0.00024 Score=71.12 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=73.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHH
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLR 118 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (710)
..+.++|++|+||||+|+.+++.....+.-...-|+.++ ... +....... +.......+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~----l~~~~~g~------------~~~~~~~~l~ 119 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDD----LVGQYIGH------------TAPKTKEVLK 119 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHH----HHHHHhcc------------chHHHHHHHH
Confidence 357899999999999999997753111111111133333 111 22211111 0001122222
Q ss_pred HHhcCCceEEEEecCCCc-----------chHHHHHHhcCCCCCCcEEEEEcCchhhhhhcc-----CCCCcceEEccCC
Q 005181 119 DHLKDKSYMVVFDDVWKI-----------DFWGDVEYALLDSKKCGRIIVTTRHMNVAKYCK-----SSSSVHVHELETL 182 (710)
Q Consensus 119 ~~l~~~~~LlvlDdv~~~-----------~~~~~~~~~l~~~~~~~~ilvTtR~~~~~~~~~-----~~~~~~~~~l~~l 182 (710)
.. ..-+|++|+++.. +..+.+...+.+...+.+||.++....+..... .......+.++++
T Consensus 120 ~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~ 196 (287)
T CHL00181 120 KA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDY 196 (287)
T ss_pred Hc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCc
Confidence 22 2348999999753 123334444545445556777775433321110 0112257999999
Q ss_pred CchhHHHHHHHHHcC
Q 005181 183 PPNEAWKLFCRKAFG 197 (710)
Q Consensus 183 ~~~ea~~l~~~~~~~ 197 (710)
+.+|..+++...+..
T Consensus 197 t~~el~~I~~~~l~~ 211 (287)
T CHL00181 197 TPEELLQIAKIMLEE 211 (287)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888743
No 160
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.94 E-value=8.1e-05 Score=78.40 Aligned_cols=148 Identities=17% Similarity=0.155 Sum_probs=84.1
Q ss_pred Cceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 22 AGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 22 ~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
.++.|.+..++.| ....+.+.|+|++|+|||++|+++++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 4567888877765 123567889999999999999999987 33333 2222111
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc------------h----HHHHHHhcC
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID------------F----WGDVEYALL 147 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~------------~----~~~~~~~l~ 147 (710)
+. ...... ....+...+.......+.+++||+++... . +..+...+.
T Consensus 253 -L~----~k~~Ge------------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld 315 (438)
T PTZ00361 253 -LI----QKYLGD------------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD 315 (438)
T ss_pred -hh----hhhcch------------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh
Confidence 11 111000 11112223333334567899999975321 0 111222222
Q ss_pred C--CCCCcEEEEEcCchhhhhhc--cCCCCcceEEccCCCchhHHHHHHHHHc
Q 005181 148 D--SKKCGRIIVTTRHMNVAKYC--KSSSSVHVHELETLPPNEAWKLFCRKAF 196 (710)
Q Consensus 148 ~--~~~~~~ilvTtR~~~~~~~~--~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 196 (710)
. ...+.+||.||...+..... ........+++++.+.++..++|..+..
T Consensus 316 g~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 316 GFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred hhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 1 12344677777765444332 1223346889999999999999998864
No 161
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.93 E-value=3.6e-06 Score=78.98 Aligned_cols=182 Identities=18% Similarity=0.118 Sum_probs=87.3
Q ss_pred hcccccccEEecCCCCCc-----cCcccccCcccceEEEecccccc----ccCc-------chhcccCCCEEEcCCCccc
Q 005181 424 IANFKLMKVLDLEDAPVD-----YLPEGVGNLFNLHYLSVKNTEVK----IIPK-------SIRNLLSLEILDLKNTLVS 487 (710)
Q Consensus 424 ~~~~~~L~~L~l~~n~~~-----~l~~~~~~l~~L~~L~l~~n~i~----~lp~-------~~~~l~~L~~L~l~~n~~~ 487 (710)
+..+..++.++||+|.|. .+...+.+-.+|+..+++.-... .+++ .+-+|+.|+..+||.|-++
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 444666677777777765 23444555666666666653221 2222 3345677777777766442
Q ss_pred -cccc----cccccccCcEEEccccccccCccCCchh----------hhhccCCCCcCccEEEEeec-CCCCCc-----c
Q 005181 488 -ELPV----EIRNLKKLRYLMVYRYNYTTGSIMPAEA----------VAKSLSSPPQYLQRLYLMGN-MKKLPD-----W 546 (710)
Q Consensus 488 -~~~~----~~~~l~~L~~L~l~~~n~~~~~~~~~~~----------~~~~l~~~~~~L~~L~L~~n-~~~ip~-----~ 546 (710)
..|+ -+++.+.|++|.++ ||.+. |..+. ........ +.|+.+....| +...|. .
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~-NnGlG---p~aG~rigkal~~la~nKKaa~k-p~Le~vicgrNRlengs~~~~a~~ 180 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLN-NNGLG---PIAGGRIGKALFHLAYNKKAADK-PKLEVVICGRNRLENGSKELSAAL 180 (388)
T ss_pred cccchHHHHHHhcCCCceeEEee-cCCCC---ccchhHHHHHHHHHHHHhhhccC-CCceEEEeccchhccCcHHHHHHH
Confidence 2232 24566677777776 34321 11110 01111111 25666665555 332221 1
Q ss_pred ccCCCCccEEEEEeeccCCc-----cccccccccccceEEeecccCCce----eEEecCCCCcccEEEeccCC
Q 005181 547 IFKLENLIRLGLELSGLAEE-----PIRVLQASPNLLELRLTGTYDYEL----FHFEAGWFPKLQKLLLWDFV 610 (710)
Q Consensus 547 ~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~L~~n~ 610 (710)
+..-.+|+.+.+..|.+... ....+..+.+|+.|+|..|.++-. ........+.|+.|.+..|-
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 22234566666666665321 112233455666666665544321 11122333445555555553
No 162
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00014 Score=77.28 Aligned_cols=151 Identities=14% Similarity=0.161 Sum_probs=87.8
Q ss_pred CCceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCH
Q 005181 21 HAGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKK 82 (710)
Q Consensus 21 ~~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (710)
-+++-|-|+.-.++ ....+-|.++||+|+|||++|+++++. .+-.| +.+..+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp--- 502 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP--- 502 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH---
Confidence 45666766655554 355688899999999999999999988 33333 433322
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-------------hHHHHHHhcCCC
Q 005181 83 NDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-------------FWGDVEYALLDS 149 (710)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~~ 149 (710)
+ ++..+.+. ....+.+.++..=+--+.+++||.+|... .+.+++.-+.-.
T Consensus 503 -E----L~sk~vGe------------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~ 565 (693)
T KOG0730|consen 503 -E----LFSKYVGE------------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL 565 (693)
T ss_pred -H----HHHHhcCc------------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc
Confidence 1 11111111 11123333333333456899999987532 222333333322
Q ss_pred CCCcEEEE---EcCchhhhhh-ccCCCCcceEEccCCCchhHHHHHHHHHcCC
Q 005181 150 KKCGRIIV---TTRHMNVAKY-CKSSSSVHVHELETLPPNEAWKLFCRKAFGP 198 (710)
Q Consensus 150 ~~~~~ilv---TtR~~~~~~~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~ 198 (710)
.....|+| |.|...+-.. +++....+.+.+++-+.+.-.++|..++..-
T Consensus 566 e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 566 EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 22323444 5565444333 3444455788899888888899999998543
No 163
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00018 Score=78.66 Aligned_cols=188 Identities=11% Similarity=0.063 Sum_probs=104.0
Q ss_pred Cceeecccchhhc-----cC-CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhh
Q 005181 22 AGFSGKEDNNQLI-----QS-ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHR 95 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~-~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (710)
++++|-+..++.+ .+ -.+.+.++|+.|+||||+|+.+++..-....... ..|.. ......+...-..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~----C~~C~~i~~~~~~ 88 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGE----CSSCKSIDNDNSL 88 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCcc----chHHHHHHcCCCC
Confidence 5688988887777 32 3456889999999999999999887421111100 00111 1111111110000
Q ss_pred hcCCCCCccccchhHHHHHHHH---HH-HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhc
Q 005181 96 VANQPAPVEIHDMEEMELITTL---RD-HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAKYC 168 (710)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~---~~-~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~~~ 168 (710)
....-.... ....+++.+.. .. -..+++-++|+|+++... .+..+...+...+..+.+|++|.+ ..+....
T Consensus 89 dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 89 DVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 000000000 01112222211 11 123456689999998775 466677777666666666665543 3443332
Q ss_pred cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchH
Q 005181 169 KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLA 225 (710)
Q Consensus 169 ~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 225 (710)
.. +...++.++++.++....+.+.+.... ..-.++.+..|++.++|.+..
T Consensus 167 ~S--Rc~~~~f~~l~~~el~~~L~~i~~~eg-----i~id~eAl~lLa~~s~GdlR~ 216 (563)
T PRK06647 167 KS--RCQHFNFRLLSLEKIYNMLKKVCLEDQ-----IKYEDEALKWIAYKSTGSVRD 216 (563)
T ss_pred HH--hceEEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHH
Confidence 22 226789999999999888888764321 122346788889999997743
No 164
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.91 E-value=3.3e-05 Score=68.03 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 005181 41 VAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 41 i~i~G~~GvGKTtla~~~~~~ 61 (710)
|.|+|++|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999987
No 165
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=1.3e-06 Score=73.35 Aligned_cols=127 Identities=20% Similarity=0.252 Sum_probs=78.8
Q ss_pred ccEEecCCCCCccCc---ccccCcccceEEEeccccccccCcchhc-ccCCCEEEcCCCccccccccccccccCcEEEcc
Q 005181 430 MKVLDLEDAPVDYLP---EGVGNLFNLHYLSVKNTEVKIIPKSIRN-LLSLEILDLKNTLVSELPVEIRNLKKLRYLMVY 505 (710)
Q Consensus 430 L~~L~l~~n~~~~l~---~~~~~l~~L~~L~l~~n~i~~lp~~~~~-l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~ 505 (710)
+..++|+.|.+..++ ..+....+|+..+|++|.++..|+.|.. .+.+++|++++|.+..+|..+..++.|+.|++.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 455777777766444 3445666777788888888888877653 457888888888888888888888888888887
Q ss_pred ccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCC
Q 005181 506 RYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAE 565 (710)
Q Consensus 506 ~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~ 565 (710)
+|.+.... .......+|..|+..+| ...+|-.+..-+..-...+.++++.+
T Consensus 109 -~N~l~~~p--------~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 109 -FNPLNAEP--------RVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred -cCccccch--------HHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccc
Confidence 44443222 11111346667777777 66666543222222223334444443
No 166
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.90 E-value=1.6e-05 Score=76.50 Aligned_cols=174 Identities=16% Similarity=0.156 Sum_probs=105.7
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEE-EEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRA-WITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~-~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-++++|.+..+.-+ ........+|||+|.|||+-|++++...-....|.+.+ -.+++...-. .+.++=...
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi-svvr~Kik~-- 111 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI-SVVREKIKN-- 111 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccc-cchhhhhcC--
Confidence 46789998888877 44567889999999999999999988754455565433 2333322110 000000000
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHhc---C---Cc-eEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE-EcCchhh
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDHLK---D---KS-YMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV-TTRHMNV 164 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~---~~-~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv-TtR~~~~ 164 (710)
.+++.-... + ++ -++|||+++.+. .|..+...+.+....+++++ |+.-..+
T Consensus 112 -------------------fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 112 -------------------FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRI 172 (346)
T ss_pred -------------------HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhC
Confidence 011111110 1 22 478999999874 67788777777666665554 4443332
Q ss_pred hhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 165 AKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 165 ~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
..-.... -.-+..+++.+++...-+...+..+. ..-..+..+.|++.++|--
T Consensus 173 i~pi~SR--C~KfrFk~L~d~~iv~rL~~Ia~~E~-----v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 173 IRPLVSR--CQKFRFKKLKDEDIVDRLEKIASKEG-----VDIDDDALKLIAKISDGDL 224 (346)
T ss_pred ChHHHhh--HHHhcCCCcchHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHcCCcH
Confidence 2222111 15678899999999988888875432 2223467888888888853
No 167
>CHL00176 ftsH cell division protein; Validated
Probab=97.90 E-value=0.00011 Score=81.34 Aligned_cols=168 Identities=12% Similarity=0.133 Sum_probs=93.5
Q ss_pred Cceeecccchhhc-----------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHH
Q 005181 22 AGFSGKEDNNQLI-----------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKND 84 (710)
Q Consensus 22 ~~~vGre~~~~~i-----------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (710)
+++.|.++..+.+ ....+-|.|+||+|+|||++|++++... .. -|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~-----p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EV-----PFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC-----CeeeccHH----H
Confidence 5678877666554 1124578999999999999999998762 11 22322211 1
Q ss_pred HHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc------------h----HHHHHHhcCC
Q 005181 85 LLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID------------F----WGDVEYALLD 148 (710)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~------------~----~~~~~~~l~~ 148 (710)
+. ..... .....+...+....+..+.+|++|+++... . +..+...+..
T Consensus 252 f~----~~~~g------------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg 315 (638)
T CHL00176 252 FV----EMFVG------------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG 315 (638)
T ss_pred HH----HHhhh------------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc
Confidence 11 11000 011123334444555678999999996531 1 1222222222
Q ss_pred C--CCCcEEEEEcCchhhhhh--ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC
Q 005181 149 S--KKCGRIIVTTRHMNVAKY--CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL 222 (710)
Q Consensus 149 ~--~~~~~ilvTtR~~~~~~~--~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 222 (710)
. ..+-.+|.||...+.... .........+.++..+.++-.+++..++.... .........+++.+.|+
T Consensus 316 ~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~------~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 316 FKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK------LSPDVSLELIARRTPGF 387 (638)
T ss_pred ccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc------cchhHHHHHHHhcCCCC
Confidence 1 233355556655433222 12222336789999999999999998874321 11223466777787774
No 168
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.90 E-value=4.2e-05 Score=78.10 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=62.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC--CCHHHHHHHHHHHHhhhcCCCCCccccchhHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE--YKKNDLLRTILKEFHRVANQPAPVEIHDMEEME 112 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 112 (710)
-+.-..++|+|++|+|||||++.+++.. ..++|+..+|+.+... .+..++++.+...+....-.. ++.....-...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I-~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~-p~~~~~~va~~ 242 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAI-TRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDE-PASRHVQVAEM 242 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhh-cccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCC-ChHHHHHHHHH
Confidence 4455678899999999999999999874 2336888889887755 567777777754332222111 11111000112
Q ss_pred HHHHHHHH-hcCCceEEEEecCCCcc
Q 005181 113 LITTLRDH-LKDKSYMVVFDDVWKID 137 (710)
Q Consensus 113 ~~~~~~~~-l~~~~~LlvlDdv~~~~ 137 (710)
+.+..+.. -++++++|++|++....
T Consensus 243 v~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 243 VIEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHHHcCCCeEEEEEChhHHH
Confidence 22222222 35799999999997654
No 169
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00018 Score=79.02 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=103.1
Q ss_pred CCceeecccchhhc-----c-CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----Q-SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~-~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
=++++|.+..++.+ . .-.+.+.++|+.|+||||+|+.++...-....-+ ..++........+.....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 45789999888777 2 3356678899999999999999987631111100 112222222222221110
Q ss_pred hhcCCCCCccccch-hHHHHHHHHHH-HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE-EcCchhhhhhcc
Q 005181 95 RVANQPAPVEIHDM-EEMELITTLRD-HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV-TTRHMNVAKYCK 169 (710)
Q Consensus 95 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv-TtR~~~~~~~~~ 169 (710)
.....-...+.... +..++.+.+.. -..++.-++|+|+++... .+..+...+...+....+|+ ||....+.....
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 00000000000011 11122222211 113456688999998764 46667766666555555554 544444443332
Q ss_pred CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 170 SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 170 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
. +...++..+++.++....+...+... + .....+.+..|++.++|.+.
T Consensus 168 S--Rc~~~~f~~~~~~ei~~~L~~i~~~e--g---i~i~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 168 S--RCQRFDFKRISVEDIVERLKYILDKE--G---IEYEDEALRLIARAAEGGMR 215 (559)
T ss_pred h--HheEEecCCCCHHHHHHHHHHHHHHc--C---CCCCHHHHHHHHHHcCCCHH
Confidence 2 22678999999999988888876422 1 11224667788888888764
No 170
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.89 E-value=0.00021 Score=75.20 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=80.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHH
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRD 119 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (710)
++.|.||=++||||+++.+.... .+. ++++...+......-..+.. ....+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d~~------------------------~~~~~ 89 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLDLL------------------------RAYIE 89 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHHHH------------------------HHHHH
Confidence 99999999999999997776652 222 67766544322111111111 11111
Q ss_pred HhcCCceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCchhhhhhc---cCCCCcceEEccCCCchhHHHHHH
Q 005181 120 HLKDKSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHMNVAKYC---KSSSSVHVHELETLPPNEAWKLFC 192 (710)
Q Consensus 120 ~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~~~~~~~---~~~~~~~~~~l~~l~~~ea~~l~~ 192 (710)
.-..++..++||.|+...+|+.....+.+.+.. ++++|+-+..+.... ...++...+++.||+-.|-..+-.
T Consensus 90 ~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~ 164 (398)
T COG1373 90 LKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKG 164 (398)
T ss_pred hhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcc
Confidence 112277899999999999999999999888777 888888775432221 112334789999999888766543
No 171
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00011 Score=81.07 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=104.3
Q ss_pred CCceeecccchhhc-----cCC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
=++++|.+..++.| .+. .+.+.++|+.|+||||+|+.++...-.....+. .++........+...-.
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCCC
Confidence 45789998777776 333 466789999999999999999877321111100 01111111111111000
Q ss_pred hhcCCCCCcc-ccchhHHHHHHHHHHH-hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEE-EcCchhhhhhcc
Q 005181 95 RVANQPAPVE-IHDMEEMELITTLRDH-LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIV-TTRHMNVAKYCK 169 (710)
Q Consensus 95 ~~~~~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilv-TtR~~~~~~~~~ 169 (710)
.....-...+ ....+..++.+.+... ..+++-++|+|+++... ....+...+-.....+.+|+ |+....+.....
T Consensus 88 ~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~ 167 (576)
T PRK14965 88 VDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITIL 167 (576)
T ss_pred CCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHH
Confidence 0000000000 0001111222222111 12345578999998765 46667777766666665555 554444544333
Q ss_pred CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc-hHHHHH
Q 005181 170 SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP-LAIVAV 229 (710)
Q Consensus 170 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 229 (710)
.. -..+++++++.++....+...+.... ..-..+.+..|++.++|.. .|+..+
T Consensus 168 SR--c~~~~f~~l~~~~i~~~L~~i~~~eg-----i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 168 SR--CQRFDFRRIPLQKIVDRLRYIADQEG-----ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred Hh--hhhhhcCCCCHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 26789999999998888877653221 1123466788888888865 444444
No 172
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.88 E-value=2.9e-06 Score=79.67 Aligned_cols=234 Identities=18% Similarity=0.117 Sum_probs=152.9
Q ss_pred CCCCceeEEEeecCCCCC--cchhhhhhcccccccEEecCCCCCc----cC-------cccccCcccceEEEecccccc-
Q 005181 399 IKDSKVRSVFLFNVDKLP--DSFMNASIANFKLMKVLDLEDAPVD----YL-------PEGVGNLFNLHYLSVKNTEVK- 464 (710)
Q Consensus 399 ~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~~~----~l-------~~~~~~l~~L~~L~l~~n~i~- 464 (710)
..+..+..+.++++..-+ ...+...+++-++|++.+++.-... .+ ...+-+||+|+..+||.|-+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 335666677777766532 2345566777788888888875432 22 244568889999999988887
Q ss_pred ccCcc----hhcccCCCEEEcCCCccccccc--------------cccccccCcEEEccccccccCccCCchhhhhccCC
Q 005181 465 IIPKS----IRNLLSLEILDLKNTLVSELPV--------------EIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSS 526 (710)
Q Consensus 465 ~lp~~----~~~l~~L~~L~l~~n~~~~~~~--------------~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~ 526 (710)
..|+. ++.-+.|.+|.++||.++.+.. ...+-|.|+...+.+|....|...- ......
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~----~a~~l~ 182 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL----SAALLE 182 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH----HHHHHH
Confidence 44443 5567889999999887765532 1235678999998865544443322 112222
Q ss_pred CCcCccEEEEeec-CCC--C----CccccCCCCccEEEEEeeccCCcc----ccccccccccceEEeecccCCceeEE--
Q 005181 527 PPQYLQRLYLMGN-MKK--L----PDWIFKLENLIRLGLELSGLAEEP----IRVLQASPNLLELRLTGTYDYELFHF-- 593 (710)
Q Consensus 527 ~~~~L~~L~L~~n-~~~--i----p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~~~~~~~~-- 593 (710)
...+|+.+.+..| +.. + -..+..+.+|+.|+|.+|-++... ...+...+.|+.|.+..|.++.....
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 3358999999988 321 1 123467899999999999886532 23445677899999999876543221
Q ss_pred ----ecCCCCcccEEEeccCCCceeeeec-------CCcCCCccEEEEccCCCC
Q 005181 594 ----EAGWFPKLQKLLLWDFVAVKSVIIE-------KGAMPDIRELEIGPCPLL 636 (710)
Q Consensus 594 ----~~~~~~~L~~L~L~~n~~~~~~~~~-------~~~l~~L~~L~l~~n~~~ 636 (710)
.-...|+|+.|...+|..-+.+... -..+|-|..|.+.+|.+.
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 1235789999999888764432211 246788888888888865
No 173
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=7.9e-05 Score=76.53 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=22.6
Q ss_pred CcccEEEeccCCCceeeeecCCcCCCccEEEEccCC
Q 005181 599 PKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCP 634 (710)
Q Consensus 599 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 634 (710)
++|+.|++++|.... .|..+ ..+|+.|+++.|.
T Consensus 156 sSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~n~ 188 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKL--PESLQSITLHIEQ 188 (426)
T ss_pred CcccEEEecCCCccc-Ccccc--cccCcEEEecccc
Confidence 689999998887543 33222 2578888888763
No 174
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00015 Score=70.17 Aligned_cols=141 Identities=12% Similarity=0.175 Sum_probs=77.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCc--ccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSE--GLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~--~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
.|.|.+|||+|.|||+|++++|+.. +....|....-+.+. ...++.+.+.+-+. -...+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsESgK-------------lV~kmF~ 239 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSESGK-------------LVAKMFQ 239 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhhhhh-------------HHHHHHH
Confidence 4899999999999999999999986 345555444444432 22344444433221 2235677
Q ss_pred HHHHHhcCCc--eEEEEecCCCcc-----------------hHHHHHHhcCCCC-CCcEEEEEcCch-hhhhhccCCCCc
Q 005181 116 TLRDHLKDKS--YMVVFDDVWKID-----------------FWGDVEYALLDSK-KCGRIIVTTRHM-NVAKYCKSSSSV 174 (710)
Q Consensus 116 ~~~~~l~~~~--~LlvlDdv~~~~-----------------~~~~~~~~l~~~~-~~~~ilvTtR~~-~~~~~~~~~~~~ 174 (710)
.|.+.+.++. +.+++|.|+... ....++..+..-+ ....+|+||.+- +-..........
T Consensus 240 kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRAD 319 (423)
T KOG0744|consen 240 KIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRAD 319 (423)
T ss_pred HHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhh
Confidence 7888887765 455669986532 1222222222111 122466666653 111111111122
Q ss_pred ceEEccCCCchhHHHHHHHHH
Q 005181 175 HVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 175 ~~~~l~~l~~~ea~~l~~~~~ 195 (710)
-+..+++-+.+.-.+++..+.
T Consensus 320 i~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 320 IVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred heeecCCccHHHHHHHHHHHH
Confidence 355677777666666666554
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.82 E-value=6.7e-05 Score=84.67 Aligned_cols=152 Identities=17% Similarity=0.205 Sum_probs=82.6
Q ss_pred Cceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCccc---ccCc-CcEEEEEeCCCCCHHHHHHHHHHH
Q 005181 22 AGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGL---KTHF-NCRAWITVGKEYKKNDLLRTILKE 92 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~---~~~f-~~~~~v~~~~~~~~~~~~~~i~~~ 92 (710)
+.++||+.++.++ ......+.|+|++|+|||++|+.++..... ...+ ++.+|. . +.. .++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-l----~~~----~lla- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-L----DIG----SLLA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-c----cHH----HHhc-
Confidence 5799999999888 334567789999999999999999875211 1111 333442 1 111 1110
Q ss_pred HhhhcCCCCCccccchhHHHHHHHHHHHh-cCCceEEEEecCCCc----------chHHHHHHhcCCCCCCcEEEE-EcC
Q 005181 93 FHRVANQPAPVEIHDMEEMELITTLRDHL-KDKSYMVVFDDVWKI----------DFWGDVEYALLDSKKCGRIIV-TTR 160 (710)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDdv~~~----------~~~~~~~~~l~~~~~~~~ilv-TtR 160 (710)
... .. .+.+.....+...+ +..+.+|++|+++.. .+...+..++...+.- ++|- ||+
T Consensus 256 --G~~-------~~-Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i-~vIgATt~ 324 (758)
T PRK11034 256 --GTK-------YR-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKI-RVIGSTTY 324 (758)
T ss_pred --ccc-------hh-hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCe-EEEecCCh
Confidence 000 00 01112222222223 346789999999743 1222233333332221 3333 444
Q ss_pred chhhhh----hccCCCCcceEEccCCCchhHHHHHHHHH
Q 005181 161 HMNVAK----YCKSSSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 161 ~~~~~~----~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
.+ ... ......+.+.+.+++.+.+++.+++....
T Consensus 325 ~E-~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QE-FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HH-HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 32 211 11111234689999999999999998765
No 176
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.80 E-value=0.00026 Score=77.39 Aligned_cols=181 Identities=11% Similarity=0.102 Sum_probs=93.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
.+-+.++||+|+|||++|++++... ... |+.++. ..+. ...... ....+...+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~~~----~~~~g~------------~~~~l~~~f 140 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SDFV----EMFVGV------------GASRVRDLF 140 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HHHH----HHHhcc------------cHHHHHHHH
Confidence 4568999999999999999998762 211 222221 1111 111000 111233334
Q ss_pred HHHhcCCceEEEEecCCCcc------------h----HHHHHHhcCCC--CCCcEEEEEcCchhhhhh-c-cCCCCcceE
Q 005181 118 RDHLKDKSYMVVFDDVWKID------------F----WGDVEYALLDS--KKCGRIIVTTRHMNVAKY-C-KSSSSVHVH 177 (710)
Q Consensus 118 ~~~l~~~~~LlvlDdv~~~~------------~----~~~~~~~l~~~--~~~~~ilvTtR~~~~~~~-~-~~~~~~~~~ 177 (710)
.......+.+|++|+++... . +..+...+... ..+-.||.||..+..... . ........+
T Consensus 141 ~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i 220 (495)
T TIGR01241 141 EQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQV 220 (495)
T ss_pred HHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEE
Confidence 44444567899999996531 1 11122222211 223345556655432221 1 122234688
Q ss_pred EccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC-chHHHHHHhh-----hc--CCCCCHHHHHHHHHh
Q 005181 178 ELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL-PLAIVAVGGL-----LS--TKNMVVSEWKKLFDR 249 (710)
Q Consensus 178 ~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~-----l~--~~~~~~~~~~~~~~~ 249 (710)
.++..+.++-.++|..+..... .. .......+++.+.|+ +-.+..+.+. .+ .+..+.+.++.++++
T Consensus 221 ~i~~Pd~~~R~~il~~~l~~~~--~~----~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~ 294 (495)
T TIGR01241 221 VVDLPDIKGREEILKVHAKNKK--LA----PDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDR 294 (495)
T ss_pred EcCCCCHHHHHHHHHHHHhcCC--CC----cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9999999999999988864321 01 122355778888775 3444333221 11 122355666666665
Q ss_pred hc
Q 005181 250 MG 251 (710)
Q Consensus 250 ~~ 251 (710)
..
T Consensus 295 ~~ 296 (495)
T TIGR01241 295 VI 296 (495)
T ss_pred Hh
Confidence 43
No 177
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.80 E-value=0.00088 Score=63.29 Aligned_cols=187 Identities=17% Similarity=0.169 Sum_probs=104.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
..+.+++.++|.-|.|||.+++++... ..+.=.++++ -.....+...+...++..+..... .....-....-
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s--~~~d~~~~v~-i~~~~~s~~~~~~ai~~~l~~~p~-----~~~~~~~e~~~ 119 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLAS--LNEDQVAVVV-IDKPTLSDATLLEAIVADLESQPK-----VNVNAVLEQID 119 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHh--cCCCceEEEE-ecCcchhHHHHHHHHHHHhccCcc-----chhHHHHHHHH
Confidence 666789999999999999999965544 1221112222 223334566777778777765211 11111112233
Q ss_pred HHHHHHh-cCCc-eEEEEecCCCcc--hHHHHHHh--cC-CCCCCcEEEEEcCch-----hhhhhccCCCCcce-EEccC
Q 005181 115 TTLRDHL-KDKS-YMVVFDDVWKID--FWGDVEYA--LL-DSKKCGRIIVTTRHM-----NVAKYCKSSSSVHV-HELET 181 (710)
Q Consensus 115 ~~~~~~l-~~~~-~LlvlDdv~~~~--~~~~~~~~--l~-~~~~~~~ilvTtR~~-----~~~~~~~~~~~~~~-~~l~~ 181 (710)
+.+.+.. +++| ..+++|++.... .++.+... +. ++..--+|+..-..+ .....-....+..+ |++.|
T Consensus 120 ~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 120 RELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 3333333 4567 999999997653 33333222 21 221111343322221 00001111222244 89999
Q ss_pred CCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHh
Q 005181 182 LPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGG 231 (710)
Q Consensus 182 l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 231 (710)
++.++...++.....+.- ...+--..+....|.....|.|.++..++.
T Consensus 200 ~~~~~t~~yl~~~Le~a~--~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 200 LTEAETGLYLRHRLEGAG--LPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred cChHHHHHHHHHHHhccC--CCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999999998876542 222222456778888999999998865543
No 178
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00045 Score=69.76 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=63.7
Q ss_pred CCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCC
Q 005181 123 DKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPS 199 (710)
Q Consensus 123 ~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 199 (710)
+++=++|+|+++.+. ....+++.+-..+.++.+|++|.+ ..+........ ..+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC--q~i~~~~~~~~~~~~~L~~~~--~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC--QRLEFKLPPAHEALAWLLAQG--V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh--eEeeCCCcCHHHHHHHHHHcC--C-
Confidence 355689999998875 455677777777777766666654 44554544322 688999999999988886542 1
Q ss_pred CCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 200 SGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 200 ~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
....+..++..++|.|...
T Consensus 187 --------~~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 187 --------SERAAQEALDAARGHPGLA 205 (319)
T ss_pred --------ChHHHHHHHHHcCCCHHHH
Confidence 1234667889999999754
No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00023 Score=73.12 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=49.4
Q ss_pred CCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhhccCCCCcceEEccCCCchhHHHHHHHH
Q 005181 123 DKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEAWKLFCRK 194 (710)
Q Consensus 123 ~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~ 194 (710)
+.+=++|+|+++... ....+...+...+.++.+|++|.++ .+....... -..+++.+++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR--c~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR--CQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh--ceeeeCCCCCHHHHHHHHHHc
Confidence 445578999998775 4566777887777777777666553 444443332 278999999999998888654
No 180
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00024 Score=74.61 Aligned_cols=168 Identities=13% Similarity=0.119 Sum_probs=98.3
Q ss_pred Cceeecccchhhc-----------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHH
Q 005181 22 AGFSGKEDNNQLI-----------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKND 84 (710)
Q Consensus 22 ~~~vGre~~~~~i-----------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (710)
.++-|.++.++.+ -...+-|.+|||+|+|||.||.+++.+. ++=|+.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-------~vPf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-------GVPFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-------CCceEeecch-----
Confidence 5688888887765 2335778899999999999999999883 3445555544
Q ss_pred HHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-------------hHHHHHHhcCCC--
Q 005181 85 LLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-------------FWGDVEYALLDS-- 149 (710)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~~-- 149 (710)
++...+ .+.....+.+.+.+.-..-++++++|+++-+. ...++...+..-
T Consensus 258 ---eivSGv------------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~ 322 (802)
T KOG0733|consen 258 ---EIVSGV------------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSN 322 (802)
T ss_pred ---hhhccc------------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccc
Confidence 111111 11123345555556666789999999997643 222333333221
Q ss_pred --CCCcEEEE---EcCchhhhhhccC-CCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC
Q 005181 150 --KKCGRIIV---TTRHMNVAKYCKS-SSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL 222 (710)
Q Consensus 150 --~~~~~ilv---TtR~~~~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 222 (710)
..|-.|+| |+|...+-...+. ....+-+.+..-++..-.++++..+.+-..+. . -...+|++.+-|+
T Consensus 323 ~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g--~----~d~~qlA~lTPGf 395 (802)
T KOG0733|consen 323 EKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG--D----FDFKQLAKLTPGF 395 (802)
T ss_pred cccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC--C----cCHHHHHhcCCCc
Confidence 11233443 6776544443332 22235677777888777788887774322111 1 2245566666655
No 181
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.0005 Score=69.56 Aligned_cols=167 Identities=9% Similarity=0.038 Sum_probs=94.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
+....++|+.|+||+++|++++...-....... .++......+.+...-...-....+........+++.+ +
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~-l 95 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVRE-I 95 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHH-H
Confidence 567889999999999999999876322111110 11111111222211110000000000001122233332 2
Q ss_pred HHHh-----cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhhccCCCCcceEEccCCCchhHHH
Q 005181 118 RDHL-----KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEAWK 189 (710)
Q Consensus 118 ~~~l-----~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~~~~~~~~~~~~l~~l~~~ea~~ 189 (710)
.+.+ .+++=++|+|+++.+. ....+++.+-..+.++.+|++|.++ .+........ +.+.+.+++.++..+
T Consensus 96 ~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC--~~~~~~~~~~~~~~~ 173 (325)
T PRK06871 96 NEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC--QTWLIHPPEEQQALD 173 (325)
T ss_pred HHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc--eEEeCCCCCHHHHHH
Confidence 2222 2455678899999875 5566788888877777777766654 5554443322 789999999999998
Q ss_pred HHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 190 LFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 190 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
.+....... ...+...+..++|.|.
T Consensus 174 ~L~~~~~~~----------~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 174 WLQAQSSAE----------ISEILTALRINYGRPL 198 (325)
T ss_pred HHHHHhccC----------hHHHHHHHHHcCCCHH
Confidence 888764211 1235666788999985
No 182
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.77 E-value=0.0007 Score=66.45 Aligned_cols=182 Identities=15% Similarity=0.101 Sum_probs=105.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcc----cccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEG----LKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEE 110 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~----~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 110 (710)
......+.|+|.+|.|||++++++++.-- ....--.|+.+.....++...+...|+..++.+..... +.
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~-------~~ 130 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRD-------RV 130 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCC-------CH
Confidence 33446899999999999999999986410 11111257788888888999999999999987754321 22
Q ss_pred HHHHHHHHHHhcC-CceEEEEecCCCcc--------hHHHHHHhcCCCCCCcEEEEEcCchhhhhhcc--CCCCcceEEc
Q 005181 111 MELITTLRDHLKD-KSYMVVFDDVWKID--------FWGDVEYALLDSKKCGRIIVTTRHMNVAKYCK--SSSSVHVHEL 179 (710)
Q Consensus 111 ~~~~~~~~~~l~~-~~~LlvlDdv~~~~--------~~~~~~~~l~~~~~~~~ilvTtR~~~~~~~~~--~~~~~~~~~l 179 (710)
......+.+.++. +-=+||+|++.+.- ++-.....+...-.-+-|.+-|++...+-..+ ...++..+.+
T Consensus 131 ~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~L 210 (302)
T PF05621_consen 131 AKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFEL 210 (302)
T ss_pred HHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccC
Confidence 2344444555554 33488999997641 22223333433333345666665532221111 1122356667
Q ss_pred cCCCchh-HHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 180 ETLPPNE-AWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 180 ~~l~~~e-a~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
+....++ ...|+......-.-...+.-...+.++.|.+.++|..
T Consensus 211 p~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 211 PRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred CCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 7666444 4555533321110112222335678999999999975
No 183
>PRK08116 hypothetical protein; Validated
Probab=97.70 E-value=0.00014 Score=72.20 Aligned_cols=103 Identities=20% Similarity=0.186 Sum_probs=58.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
...+.|+|+.|+|||.||.++++.. ......++|++ ..+++..+...+.... ..+ ...+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~---------~~~----~~~~ 172 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG---------KED----ENEI 172 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc---------ccc----HHHH
Confidence 3458999999999999999999984 22334567765 2334444443332111 001 2223
Q ss_pred HHHhcCCceEEEEecCC--CcchHHH--HHHhcCC-CCCCcEEEEEcCch
Q 005181 118 RDHLKDKSYMVVFDDVW--KIDFWGD--VEYALLD-SKKCGRIIVTTRHM 162 (710)
Q Consensus 118 ~~~l~~~~~LlvlDdv~--~~~~~~~--~~~~l~~-~~~~~~ilvTtR~~ 162 (710)
.+.+.+-. ||||||+. ...+|.. +...+.. ...+..+|+||...
T Consensus 173 ~~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 173 IRSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HHHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 34444444 89999994 3333333 3333322 13445688888653
No 184
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.68 E-value=0.00011 Score=76.54 Aligned_cols=116 Identities=15% Similarity=0.195 Sum_probs=71.3
Q ss_pred Cceeecccchhhc---cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcC
Q 005181 22 AGFSGKEDNNQLI---QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVAN 98 (710)
Q Consensus 22 ~~~vGre~~~~~i---~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 98 (710)
+++++.++.++.+ ....+.+.++|++|+|||++|+++++.......+..+.|+.+....+....+..+.-. .
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-----~ 249 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-----G 249 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-----C
Confidence 4566777777766 4456788899999999999999999885445567788899988777665555433110 0
Q ss_pred CCCCccccchhHHHHHHHHHHHhc--CCceEEEEecCCCcc---hHHHHHHhcC
Q 005181 99 QPAPVEIHDMEEMELITTLRDHLK--DKSYMVVFDDVWKID---FWGDVEYALL 147 (710)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~--~~~~LlvlDdv~~~~---~~~~~~~~l~ 147 (710)
..-.... .-..+.+..... ++++++|+|+++... .++.+...+.
T Consensus 250 --vgy~~~~---G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 250 --VGFRRKD---GIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred --CCeEecC---chHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 0000000 011222222222 367999999998764 2445444443
No 185
>PRK08181 transposase; Validated
Probab=97.67 E-value=0.00012 Score=72.04 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=56.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
.....+.|+|++|+|||.||.++++.. ......++|++. .+++..+..... +.+...
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~------~~L~~~l~~a~~------------~~~~~~--- 160 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT------TDLVQKLQVARR------------ELQLES--- 160 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH------HHHHHHHHHHHh------------CCcHHH---
Confidence 345679999999999999999998874 223345677643 334444432210 001111
Q ss_pred HHHHHhcCCceEEEEecCCCcc--h--HHHHHHhcCCCCCCcEEEEEcCch
Q 005181 116 TLRDHLKDKSYMVVFDDVWKID--F--WGDVEYALLDSKKCGRIIVTTRHM 162 (710)
Q Consensus 116 ~~~~~l~~~~~LlvlDdv~~~~--~--~~~~~~~l~~~~~~~~ilvTtR~~ 162 (710)
....+. +-=|||+||+.... . .+.+...+........+||||...
T Consensus 161 -~l~~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 161 -AIAKLD-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred -HHHHHh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 222222 33499999996432 1 223344443322223588888764
No 186
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0009 Score=70.49 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=87.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
..-|.+|||+|+|||-||+++++.. +.-|+.+..+ +++..+ ++.. ...+...+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa-------g~NFisVKGP----ELlNkY---VGES-------------ErAVR~vF 597 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA-------GANFISVKGP----ELLNKY---VGES-------------ERAVRQVF 597 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc-------cCceEeecCH----HHHHHH---hhhH-------------HHHHHHHH
Confidence 5667899999999999999999982 3455666554 222222 2111 11222323
Q ss_pred HHHhcCCceEEEEecCCCcc-------------hHHHHHHhcCCC--CCCcEEEE-EcCchhhhhh-ccCCCCcceEEcc
Q 005181 118 RDHLKDKSYMVVFDDVWKID-------------FWGDVEYALLDS--KKCGRIIV-TTRHMNVAKY-CKSSSSVHVHELE 180 (710)
Q Consensus 118 ~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~~--~~~~~ilv-TtR~~~~~~~-~~~~~~~~~~~l~ 180 (710)
...=..-+++|+||.++... -+.+++.-+.-. ..|--||- |.|...+-.. .+.......+-|+
T Consensus 598 qRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~ 677 (802)
T KOG0733|consen 598 QRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVG 677 (802)
T ss_pred HHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeec
Confidence 32223478999999997531 223333333222 12222332 5554333222 3444445788899
Q ss_pred CCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 181 TLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 181 ~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
.-+.+|-.++++........+...+.++.+++.. ..|.|+-
T Consensus 678 lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 678 LPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 9999999999999986432233333344444432 2444553
No 187
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=2.8e-05 Score=86.84 Aligned_cols=125 Identities=22% Similarity=0.215 Sum_probs=83.4
Q ss_pred CceeEEEEEccCcccc--c--ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceE
Q 005181 380 SKTRRIAIQRSIDDGA--L--ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHY 455 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~~--~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~ 455 (710)
.+++++.+.+...-.. + -...+|.|++|.+.+-....++ +.....++++|..||+++++++.+ ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 4577777766443221 1 2556788888888877664443 446677888888888888888877 56778888888
Q ss_pred EEeccccccccC--cchhcccCCCEEEcCCCccccccc-------cccccccCcEEEccc
Q 005181 456 LSVKNTEVKIIP--KSIRNLLSLEILDLKNTLVSELPV-------EIRNLKKLRYLMVYR 506 (710)
Q Consensus 456 L~l~~n~i~~lp--~~~~~l~~L~~L~l~~n~~~~~~~-------~~~~l~~L~~L~l~~ 506 (710)
|.+.+-.+..-. ..+.+|++|+.||+|.......+. .-..||+|+.|+.++
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 888876665321 246678888888888543322221 112477888888874
No 188
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=6.9e-05 Score=67.69 Aligned_cols=123 Identities=19% Similarity=0.285 Sum_probs=60.4
Q ss_pred cEEecCCCCCccCccccc-CcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccc-cccCcEEEccccc
Q 005181 431 KVLDLEDAPVDYLPEGVG-NLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRN-LKKLRYLMVYRYN 508 (710)
Q Consensus 431 ~~L~l~~n~~~~l~~~~~-~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~-l~~L~~L~l~~~n 508 (710)
+.++|.+..+..+.. ++ -+.+...++|++|.+..++ .|..++.|.+|.+.+|.|+.+.+.+.. +++|+.|.|.+ |
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-N 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-N 98 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC-c
Confidence 445555554432221 11 1224455666666655442 345556666666666666655554432 34455555542 2
Q ss_pred cccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCcc---ccccccccccceEEeec
Q 005181 509 YTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEP---IRVLQASPNLLELRLTG 584 (710)
Q Consensus 509 ~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~ 584 (710)
.+.. ++.+. .+..||.|++|.+-+|+.+... ...+.++|+|+.||+++
T Consensus 99 si~~---------------------------l~dl~-pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQE---------------------------LGDLD-PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhh---------------------------hhhcc-hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 2210 11111 2356677777777776654321 23445666666666653
No 189
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.62 E-value=0.00056 Score=64.24 Aligned_cols=168 Identities=17% Similarity=0.143 Sum_probs=95.2
Q ss_pred CCCCceeecccchhh--c------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHH
Q 005181 19 FPHAGFSGKEDNNQL--I------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKND 84 (710)
Q Consensus 19 ~~~~~~vGre~~~~~--i------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (710)
..-+++||.|+.-.. | ...++.|.++||+|.|||.+|+++++.. +..| +.+. .+ +
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~--kvp~---l~vk--at----~ 186 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPL---LLVK--AT----E 186 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc--CCce---EEec--hH----H
Confidence 334678887766433 1 5557999999999999999999999983 3222 2222 11 1
Q ss_pred HHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHH---Hh-cCCceEEEEecCCCcc--------------hHHHHHHhc
Q 005181 85 LLRTILKEFHRVANQPAPVEIHDMEEMELITTLRD---HL-KDKSYMVVFDDVWKID--------------FWGDVEYAL 146 (710)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~l-~~~~~LlvlDdv~~~~--------------~~~~~~~~l 146 (710)
++ -+.++ +.++++++ .- +.-++++++|..+-.. ....++.-+
T Consensus 187 li---GehVG-----------------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTel 246 (368)
T COG1223 187 LI---GEHVG-----------------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTEL 246 (368)
T ss_pred HH---HHHhh-----------------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhc
Confidence 11 11111 22333333 22 2367999999986532 222333333
Q ss_pred C--CCCCCcEEEEEcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 147 L--DSKKCGRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 147 ~--~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
. ....|-..|-.|-.+.+....-......-++..--+++|-.+++..++..- +-......+.+++..+|+.
T Consensus 247 Dgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~------Plpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 247 DGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF------PLPVDADLRYLAAKTKGMS 319 (368)
T ss_pred cCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC------CCccccCHHHHHHHhCCCC
Confidence 2 233454555555555444433222223567778889999999999988422 1112233666777777653
No 190
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.61 E-value=0.00057 Score=78.53 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=83.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
..+-+.++||+|+|||++|++++.. ....| +.+... +++..... .....+...
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~--------~l~~~~vG------------ese~~i~~~ 538 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP--------EILSKWVG------------ESEKAIREI 538 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH--------HHhhcccC------------cHHHHHHHH
Confidence 3466899999999999999999987 33222 222211 11111100 011122333
Q ss_pred HHHHhcCCceEEEEecCCCcc--------------hHHHHHHhcCCC--CCCcEEEEEcCchhhhhhc--cCCCCcceEE
Q 005181 117 LRDHLKDKSYMVVFDDVWKID--------------FWGDVEYALLDS--KKCGRIIVTTRHMNVAKYC--KSSSSVHVHE 178 (710)
Q Consensus 117 ~~~~l~~~~~LlvlDdv~~~~--------------~~~~~~~~l~~~--~~~~~ilvTtR~~~~~~~~--~~~~~~~~~~ 178 (710)
+...-...+.++++|+++... ...++...+... ..+-.||.||..++..... ........+.
T Consensus 539 f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~ 618 (733)
T TIGR01243 539 FRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLIL 618 (733)
T ss_pred HHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEE
Confidence 333334567999999996431 122233333322 2232445466555433322 1223447889
Q ss_pred ccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 179 LETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 179 l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
++..+.++-.++|..+..... ... ......+++.+.|+-
T Consensus 619 v~~Pd~~~R~~i~~~~~~~~~--~~~----~~~l~~la~~t~g~s 657 (733)
T TIGR01243 619 VPPPDEEARKEIFKIHTRSMP--LAE----DVDLEELAEMTEGYT 657 (733)
T ss_pred eCCcCHHHHHHHHHHHhcCCC--CCc----cCCHHHHHHHcCCCC
Confidence 999999999999987653221 111 122566777777764
No 191
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.60 E-value=0.0012 Score=62.83 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=36.2
Q ss_pred CCCCCceeecccchhhc---------cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 18 NFPHAGFSGKEDNNQLI---------QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 18 ~~~~~~~vGre~~~~~i---------~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+-++++|.|...+.| ......|.+||..|.|||++++++.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 33457799999888877 444678889999999999999999876
No 192
>PRK10536 hypothetical protein; Provisional
Probab=97.59 E-value=0.00035 Score=67.19 Aligned_cols=136 Identities=9% Similarity=0.059 Sum_probs=72.5
Q ss_pred Cceeecccchhhc---cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeC---------CCCCHHHHHHHH
Q 005181 22 AGFSGKEDNNQLI---QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVG---------KEYKKNDLLRTI 89 (710)
Q Consensus 22 ~~~vGre~~~~~i---~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~---------~~~~~~~~~~~i 89 (710)
..+.+|....... -.....|.+.|++|+|||+||.+++.+.-..+.|+.++...-. -+-+..+-+..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 3455565555554 2235699999999999999999988753223456554433110 011222333322
Q ss_pred HHHHhhhcCCCCCccccchhHHHHHH----H----HHHHhcCCc---eEEEEecCCCcchHHHHHHhcCCCCCCcEEEEE
Q 005181 90 LKEFHRVANQPAPVEIHDMEEMELIT----T----LRDHLKDKS---YMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVT 158 (710)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~----~----~~~~l~~~~---~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvT 158 (710)
+.-+......-.... ..+.... . --.+++++. -++|+|++++.+. .++...+-..+.+|++|+|
T Consensus 135 ~~pi~D~L~~~~~~~----~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 135 FRPVYDVLVRRLGAS----FMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHHHHHhChH----HHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEEEEe
Confidence 222221110000000 0000000 0 013666765 4999999988764 4455556666788999987
Q ss_pred cCch
Q 005181 159 TRHM 162 (710)
Q Consensus 159 tR~~ 162 (710)
-=..
T Consensus 210 GD~~ 213 (262)
T PRK10536 210 GDIT 213 (262)
T ss_pred CChh
Confidence 6443
No 193
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.00075 Score=69.06 Aligned_cols=168 Identities=11% Similarity=0.070 Sum_probs=94.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCcc-ccchhHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVE-IHDMEEMELIT 115 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~ 115 (710)
-+..+.++|+.|+||+++|.+++...-..+.-+.. .|+. ....+.+............+.. ......+++.+
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg~----C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~ 95 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCGH----CRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVRE 95 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCC----CHHHHHHHcCCCCCEEEEecccccccCCHHHHHH
Confidence 35788899999999999999987763111111100 1111 1111111110000000000000 01122233332
Q ss_pred HHHHHh-----cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhccCCCCcceEEccCCCchhH
Q 005181 116 TLRDHL-----KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEA 187 (710)
Q Consensus 116 ~~~~~l-----~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~~~~~~~~~~~~~l~~l~~~ea 187 (710)
+.+.+ .+++=++|+|+++.+. ....+++.+-..+.++.+|++|.+ ..+........ +.+.+.+++.+++
T Consensus 96 -l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC--q~~~~~~~~~~~~ 172 (334)
T PRK07993 96 -VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC--RLHYLAPPPEQYA 172 (334)
T ss_pred -HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc--ccccCCCCCHHHH
Confidence 22322 2456689999998875 566788888887777766666655 45655544322 6789999999999
Q ss_pred HHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 188 WKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
.+.+.... +. ..+.+..++..++|.|.
T Consensus 173 ~~~L~~~~-~~---------~~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 173 LTWLSREV-TM---------SQDALLAALRLSAGAPG 199 (334)
T ss_pred HHHHHHcc-CC---------CHHHHHHHHHHcCCCHH
Confidence 98886542 11 12446778899999995
No 194
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.57 E-value=0.00097 Score=71.55 Aligned_cols=156 Identities=15% Similarity=0.066 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
..+-|.++||+|+|||.+|++++.. ..-. .+.+..+. +.... .+.+...+.+.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e--~~~~---~~~l~~~~----------l~~~~------------vGese~~l~~~ 310 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND--WQLP---LLRLDVGK----------LFGGI------------VGESESRMRQM 310 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEEhHH----------hcccc------------cChHHHHHHHH
Confidence 4577899999999999999999887 2221 22222211 00000 00011122222
Q ss_pred HHHHhcCCceEEEEecCCCcc--------------hHHHHHHhcCCCCCCcEEEEEcCchhhhh-hc-cCCCCcceEEcc
Q 005181 117 LRDHLKDKSYMVVFDDVWKID--------------FWGDVEYALLDSKKCGRIIVTTRHMNVAK-YC-KSSSSVHVHELE 180 (710)
Q Consensus 117 ~~~~l~~~~~LlvlDdv~~~~--------------~~~~~~~~l~~~~~~~~ilvTtR~~~~~~-~~-~~~~~~~~~~l~ 180 (710)
++..-...+++|++|+++..- .+..+...+.....+--||.||.+..... .. +.......+.++
T Consensus 311 f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~ 390 (489)
T CHL00195 311 IRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLD 390 (489)
T ss_pred HHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeC
Confidence 332223578999999997421 11122222332233334555776554222 11 223334688999
Q ss_pred CCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 181 TLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 181 ~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
.-+.++-.++|..+..... +.. ........+++.+.|+-
T Consensus 391 lP~~~eR~~Il~~~l~~~~-~~~---~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 391 LPSLEEREKIFKIHLQKFR-PKS---WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred CcCHHHHHHHHHHHHhhcC-CCc---ccccCHHHHHhhcCCCC
Confidence 9999999999998874321 100 01223566777777764
No 195
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.54 E-value=0.002 Score=64.96 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..++.++||||+|+|||.+|++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999987
No 196
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.53 E-value=0.00038 Score=80.00 Aligned_cols=170 Identities=11% Similarity=0.074 Sum_probs=91.2
Q ss_pred CCceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCH
Q 005181 21 HAGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKK 82 (710)
Q Consensus 21 ~~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (710)
-+++.|.+..++.| -...+.+.|+|++|+|||++|+++++. .... .+.++...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~---~i~i~~~~---- 247 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAY---FISINGPE---- 247 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCe---EEEEecHH----
Confidence 34588888887766 133467899999999999999999886 2222 23332211
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-------------hHHHHHHhcCCC
Q 005181 83 NDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-------------FWGDVEYALLDS 149 (710)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~~ 149 (710)
+. ... .......+...+.......+.+|++|+++... ....+...+...
T Consensus 248 --i~----~~~------------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l 309 (733)
T TIGR01243 248 --IM----SKY------------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL 309 (733)
T ss_pred --Hh----ccc------------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc
Confidence 10 000 00011122333333444567899999986531 122333333322
Q ss_pred C-CCcEEEE-EcCchh-hhhhcc-CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 150 K-KCGRIIV-TTRHMN-VAKYCK-SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 150 ~-~~~~ilv-TtR~~~-~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
. .+..+++ ||.... +..... .......+.++..+.++-.+++........ . .......++++.+.|+-
T Consensus 310 ~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~--l----~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 310 KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP--L----AEDVDLDKLAEVTHGFV 381 (733)
T ss_pred ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC--C----ccccCHHHHHHhCCCCC
Confidence 2 2333444 444332 211111 111235788888898888888886653221 0 01123667788888874
No 197
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.53 E-value=0.00053 Score=62.43 Aligned_cols=118 Identities=15% Similarity=0.136 Sum_probs=66.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCccccc------------------CcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKT------------------HFNCRAWITVGKEYKKNDLLRTILKEFHRVANQ 99 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~------------------~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 99 (710)
+..+.++|+.|+||+++|.++++..-... ....+.|+.-....
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~------------------- 79 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK------------------- 79 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-------------------
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-------------------
Confidence 56789999999999999999987531111 22233333222110
Q ss_pred CCCccccchhHHHHHHHHHHHhc-----CCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCchh-hhhhccCC
Q 005181 100 PAPVEIHDMEEMELITTLRDHLK-----DKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHMN-VAKYCKSS 171 (710)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~-----~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~~-~~~~~~~~ 171 (710)
.....+++. .+.+.+. ++.=++|+|+++... ....++..+-..+..+.+|++|.+.. +.......
T Consensus 80 ------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR 152 (162)
T PF13177_consen 80 ------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSR 152 (162)
T ss_dssp ------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT
T ss_pred ------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh
Confidence 011222333 3333332 345689999999875 56678888888888888888887753 44444332
Q ss_pred CCcceEEccCCC
Q 005181 172 SSVHVHELETLP 183 (710)
Q Consensus 172 ~~~~~~~l~~l~ 183 (710)
. ..+.+.+++
T Consensus 153 c--~~i~~~~ls 162 (162)
T PF13177_consen 153 C--QVIRFRPLS 162 (162)
T ss_dssp S--EEEEE----
T ss_pred c--eEEecCCCC
Confidence 2 567776654
No 198
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.52 E-value=0.012 Score=60.58 Aligned_cols=207 Identities=12% Similarity=0.150 Sum_probs=118.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHH-HHhhCCcccccCcCcEEEEEeCCCC---CHHHHHHHHHHHHhh---------------
Q 005181 35 QSERSVVAVVGEGGLGKTTVA-GKIFNSEGLKTHFNCRAWITVGKEY---KKNDLLRTILKEFHR--------------- 95 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla-~~~~~~~~~~~~f~~~~~v~~~~~~---~~~~~~~~i~~~l~~--------------- 95 (710)
......|+|+||-|+||+.|+ .++.++ .+.+++++|..-. +...++..++.+++-
T Consensus 14 e~~~TFIvV~GPrGSGK~elV~d~~L~~------r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~nSiss~ID 87 (431)
T PF10443_consen 14 ENPNTFIVVQGPRGSGKRELVMDHVLKD------RKNVLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWMNSISSFID 87 (431)
T ss_pred cCCCeEEEEECCCCCCccHHHHHHHHhC------CCCEEEEEChHhhhccChHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 344568999999999999999 676555 2237888775433 344566666655552
Q ss_pred -----hcCCCCC-ccccchhHHHH----HHHHHH-------------------Hhc---CCceEEEEecCCCcch-----
Q 005181 96 -----VANQPAP-VEIHDMEEMEL----ITTLRD-------------------HLK---DKSYMVVFDDVWKIDF----- 138 (710)
Q Consensus 96 -----~~~~~~~-~~~~~~~~~~~----~~~~~~-------------------~l~---~~~~LlvlDdv~~~~~----- 138 (710)
..++... ....+.....+ ...++. +++ .++-++|+||.....+
T Consensus 88 La~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~~k~~~~~~i 167 (431)
T PF10443_consen 88 LAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFLHKAEENDFI 167 (431)
T ss_pred HHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchhccCcccchH
Confidence 1111111 11111111111 111111 111 1267899999865421
Q ss_pred HHHH---HHhcCCCCCCcEEEEEcCchhh---hhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCC-----------
Q 005181 139 WGDV---EYALLDSKKCGRIIVTTRHMNV---AKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSG----------- 201 (710)
Q Consensus 139 ~~~~---~~~l~~~~~~~~ilvTtR~~~~---~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~----------- 201 (710)
|+.+ ...+-. .+-.+||++|-+... .....+....+.+.+...+.+.|.++...........
T Consensus 168 y~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~ 246 (431)
T PF10443_consen 168 YDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQN 246 (431)
T ss_pred HHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccccccccccccccc
Confidence 1111 111211 233478888877433 3333445556788999999999999999987543110
Q ss_pred CCC----chhHHHHHHHHHHHhCCCchHHHHHHhhhcCCCCCHHHHHHHHH
Q 005181 202 GSC----PSELRELSRDILAKCGGLPLAIVAVGGLLSTKNMVVSEWKKLFD 248 (710)
Q Consensus 202 ~~~----~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~ 248 (710)
... ...........++..||=-..|+.+++.++..........+.+.
T Consensus 247 ~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 247 KNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred ccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 000 02355667888899999999999999999887433333344333
No 199
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.51 E-value=0.00045 Score=76.04 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=32.8
Q ss_pred CCceeecccchhhc----------cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 21 HAGFSGKEDNNQLI----------QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 21 ~~~~vGre~~~~~i----------~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-++++|.+..++.+ ....++++|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46688888777666 223467999999999999999999876
No 200
>PRK06526 transposase; Provisional
Probab=97.50 E-value=0.0002 Score=70.11 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
.....+.|+|++|+|||+||.+++...
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 345678999999999999999998774
No 201
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0026 Score=64.27 Aligned_cols=165 Identities=10% Similarity=0.015 Sum_probs=93.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCc-cccchhHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPV-EIHDMEEMELITT 116 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 116 (710)
+..+.++|+.|+||+++|..++...-..+.-+. .|+. ......+...-...-....+. .......+++.+
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~----C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~- 95 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGF----CHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQ- 95 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCC----CHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHH-
Confidence 568899999999999999999775311111000 1111 111111111000000000000 001122333332
Q ss_pred HHHHh-----cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhccCCCCcceEEccCCCchhHH
Q 005181 117 LRDHL-----KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEAW 188 (710)
Q Consensus 117 ~~~~l-----~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~~~~~~~~~~~~~l~~l~~~ea~ 188 (710)
+.+.+ .+.+=++|+|+++... ....+.+.+-..+.++.+|++|.+ ..+........ +.+.+.+++.+++.
T Consensus 96 l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC--q~~~~~~~~~~~~~ 173 (319)
T PRK06090 96 CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC--QQWVVTPPSTAQAM 173 (319)
T ss_pred HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc--eeEeCCCCCHHHHH
Confidence 33332 2344588999998875 566788888877777766665554 45665554432 78999999999999
Q ss_pred HHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 189 KLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
+.+.... . +.+..++..++|.|...
T Consensus 174 ~~L~~~~--~-----------~~~~~~l~l~~G~p~~A 198 (319)
T PRK06090 174 QWLKGQG--I-----------TVPAYALKLNMGSPLKT 198 (319)
T ss_pred HHHHHcC--C-----------chHHHHHHHcCCCHHHH
Confidence 8886542 0 02356788999999765
No 202
>PRK09183 transposase/IS protein; Provisional
Probab=97.48 E-value=0.00038 Score=68.69 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEE
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWIT 75 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~ 75 (710)
+....++|+|++|+|||+||..++.... .....+.|++
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v~~~~ 137 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAV--RAGIKVRFTT 137 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEe
Confidence 3456788999999999999999977632 2223455654
No 203
>PRK06921 hypothetical protein; Provisional
Probab=97.47 E-value=0.00053 Score=67.88 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccC-cCcEEEEEe
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTH-FNCRAWITV 76 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~-f~~~~~v~~ 76 (710)
....+.++|+.|+|||+||.++++.. ... ...++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l--~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL--MRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH--hhhcCceEEEEEH
Confidence 46789999999999999999999984 332 456677764
No 204
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0031 Score=64.40 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=60.1
Q ss_pred CCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEc-CchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCC
Q 005181 123 DKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTT-RHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPS 199 (710)
Q Consensus 123 ~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTt-R~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 199 (710)
+++=++|+|+++.+. ....+++.+-..+.++.+|++| +...+........ +.+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRc--q~i~~~~~~~~~~~~~L~~~~--~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRC--RQFPMTVPAPEAAAAWLAAQG--V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcC--EEEEecCCCHHHHHHHHHHcC--C-
Confidence 344588899998875 5667888888777777555544 4455555544322 789999999999998887652 1
Q ss_pred CCCCCchhHHHHHHHHHHHhCCCchH
Q 005181 200 SGGSCPSELRELSRDILAKCGGLPLA 225 (710)
Q Consensus 200 ~~~~~~~~~~~~~~~i~~~~~g~Pla 225 (710)
. ....++..++|.|..
T Consensus 206 -----~-----~~~~~l~~~~Gsp~~ 221 (342)
T PRK06964 206 -----A-----DADALLAEAGGAPLA 221 (342)
T ss_pred -----C-----hHHHHHHHcCCCHHH
Confidence 0 122356778999864
No 205
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0027 Score=68.24 Aligned_cols=165 Identities=15% Similarity=0.066 Sum_probs=91.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
...|.|.|+.|+|||+||+++++... +...-.+.+++|+.-.... ++.+-. .+...+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~--~e~iQk--------------------~l~~vf 487 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSS--LEKIQK--------------------FLNNVF 487 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchh--HHHHHH--------------------HHHHHH
Confidence 57889999999999999999999864 5555566677766532111 111111 112234
Q ss_pred HHHhcCCceEEEEecCCCcc--------hHH-------HHH-HhcCC-CCCCc--EEEEEcCchhhhhh-c-cCCCCcce
Q 005181 118 RDHLKDKSYMVVFDDVWKID--------FWG-------DVE-YALLD-SKKCG--RIIVTTRHMNVAKY-C-KSSSSVHV 176 (710)
Q Consensus 118 ~~~l~~~~~LlvlDdv~~~~--------~~~-------~~~-~~l~~-~~~~~--~ilvTtR~~~~~~~-~-~~~~~~~~ 176 (710)
-+.+.-.+-++||||++-.. +++ .+. +.... ...+. ++|-|.....-... . ...-...+
T Consensus 488 se~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~ 567 (952)
T KOG0735|consen 488 SEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIV 567 (952)
T ss_pred HHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEE
Confidence 44555678899999986421 111 111 11111 12333 34445554322111 1 11112246
Q ss_pred EEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC-chHHHHHH
Q 005181 177 HELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL-PLAIVAVG 230 (710)
Q Consensus 177 ~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 230 (710)
+.+++++.++-.++++...... ......+...-+...|.|+ +..++++.
T Consensus 568 ~~L~ap~~~~R~~IL~~~~s~~-----~~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 568 IALPAPAVTRRKEILTTIFSKN-----LSDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred EecCCcchhHHHHHHHHHHHhh-----hhhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 7889999888888887765221 1222334455588888887 66665543
No 206
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00015 Score=65.60 Aligned_cols=104 Identities=17% Similarity=0.135 Sum_probs=57.6
Q ss_pred CccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeee-ecCCcCCCccEEEE
Q 005181 552 NLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVI-IEKGAMPDIRELEI 630 (710)
Q Consensus 552 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l 630 (710)
+...++|++|.+.. ...|..+++|..|.|.+|.++.+-|.....+|+|..|.|.+|++..... ..+..||+|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34455555555533 2344555566666666666655555444555666666666665432211 22456777777777
Q ss_pred ccCCCCCCC---ccccccCCCCcEEEEecC
Q 005181 631 GPCPLLMEI---PIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 631 ~~n~~~~~~---p~~~~~l~~L~~L~l~~~ 657 (710)
-+|+....- --.+..+++|+.||++.-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 777654211 123566777888877653
No 207
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.40 E-value=0.0028 Score=68.21 Aligned_cols=200 Identities=14% Similarity=0.129 Sum_probs=121.8
Q ss_pred CCCceeecccchhhc---------c-CCCeEEEEEcCCCCCHHHHHHHhhCCc------ccccCcCcEEEEEeCCCCCHH
Q 005181 20 PHAGFSGKEDNNQLI---------Q-SERSVVAVVGEGGLGKTTVAGKIFNSE------GLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 20 ~~~~~vGre~~~~~i---------~-~~~~~i~i~G~~GvGKTtla~~~~~~~------~~~~~f~~~~~v~~~~~~~~~ 83 (710)
.|..+=+||.|...| . ...+++.|.|.+|.|||..+..+.+.. ..-..|. .+.++...-..+.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 567788899999887 3 445699999999999999999998742 1223333 3455666666788
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhc-----CCceEEEEecCCCcc-hHHHHHHhcCCC--CCCcEE
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLK-----DKSYMVVFDDVWKID-FWGDVEYALLDS--KKCGRI 155 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~LlvlDdv~~~~-~~~~~~~~l~~~--~~~~~i 155 (710)
++...|...+.... ...+...+.+..++. .+.+++++|+++..- .-++++..+.++ .+++|+
T Consensus 473 ~~Y~~I~~~lsg~~----------~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKL 542 (767)
T KOG1514|consen 473 EIYEKIWEALSGER----------VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKL 542 (767)
T ss_pred HHHHHHHHhcccCc----------ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCce
Confidence 89999988886643 233455666666654 356899999987642 223455554332 466665
Q ss_pred EE-EcCc-hhhhhhc-----cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHH
Q 005181 156 IV-TTRH-MNVAKYC-----KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVA 228 (710)
Q Consensus 156 lv-TtR~-~~~~~~~-----~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 228 (710)
+| +--+ .++.... ...-....+...|.+.++-.++...+..+. ........+-.+++|+...|..-.|+.+
T Consensus 543 vvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~--~~f~~~aielvarkVAavSGDaRraldi 620 (767)
T KOG1514|consen 543 VVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL--DAFENKAIELVARKVAAVSGDARRALDI 620 (767)
T ss_pred EEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch--hhcchhHHHHHHHHHHhccccHHHHHHH
Confidence 55 3222 1111111 111112467888999999888888776433 1112223444556666655555555554
Q ss_pred HHhh
Q 005181 229 VGGL 232 (710)
Q Consensus 229 ~~~~ 232 (710)
.-+.
T Consensus 621 c~RA 624 (767)
T KOG1514|consen 621 CRRA 624 (767)
T ss_pred HHHH
Confidence 4443
No 208
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0017 Score=67.32 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=85.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
..+...+.++|++|+|||+||.+++.. ..|+.+--++-... .+.+....+
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~m--------------------------iG~sEsaKc 584 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDM--------------------------IGLSESAKC 584 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHc--------------------------cCccHHHHH
Confidence 344578899999999999999999876 66765443321110 111111223
Q ss_pred HHH----HHHhcCCceEEEEecCCCcch------------HHHHHHhcCCCC-CCcEEEE--EcCchhhhhhccCC-CCc
Q 005181 115 TTL----RDHLKDKSYMVVFDDVWKIDF------------WGDVEYALLDSK-KCGRIIV--TTRHMNVAKYCKSS-SSV 174 (710)
Q Consensus 115 ~~~----~~~l~~~~~LlvlDdv~~~~~------------~~~~~~~l~~~~-~~~~ilv--TtR~~~~~~~~~~~-~~~ 174 (710)
..+ ...-+..--++|+||++..-+ ++.++..+...+ .|-|.+| ||....+...+... ...
T Consensus 585 ~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~ 664 (744)
T KOG0741|consen 585 AHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFS 664 (744)
T ss_pred HHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhh
Confidence 333 334445557899999976433 334444554433 3334433 66666676666532 122
Q ss_pred ceEEccCCCc-hhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHh
Q 005181 175 HVHELETLPP-NEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKC 219 (710)
Q Consensus 175 ~~~~l~~l~~-~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 219 (710)
..+.++.++. ++..+.+...-.- .+...+..+++....|
T Consensus 665 ~~i~Vpnl~~~~~~~~vl~~~n~f------sd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 665 STIHVPNLTTGEQLLEVLEELNIF------SDDEVRAIAEQLLSKK 704 (744)
T ss_pred heeecCccCchHHHHHHHHHccCC------CcchhHHHHHHHhccc
Confidence 5788999988 6677777665421 1223344555555544
No 209
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00046 Score=74.00 Aligned_cols=153 Identities=21% Similarity=0.241 Sum_probs=87.1
Q ss_pred CCceeecccchhhc-----------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTI 89 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (710)
+++-.|.++.-+|| .-+-++++++||+|||||.+|+.+|+. ....| +-++++.-.+..+
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAe----- 479 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAE----- 479 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHh-----
Confidence 56778988888877 445689999999999999999999887 44444 3345554433211
Q ss_pred HHHHhhhcCCCCCccccchhHHHHHHHHHHHhcC---CceEEEEecCCCc------chHHHHHHhcC------------C
Q 005181 90 LKEFHRVANQPAPVEIHDMEEMELITTLRDHLKD---KSYMVVFDDVWKI------DFWGDVEYALL------------D 148 (710)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~LlvlDdv~~~------~~~~~~~~~l~------------~ 148 (710)
+.++. .... ....-++.++|+. .+-|+++|.||.. +.-..++..+. +
T Consensus 480 ---IkGHR--RTYV-------GAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLd 547 (906)
T KOG2004|consen 480 ---IKGHR--RTYV-------GAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLD 547 (906)
T ss_pred ---hcccc--eeee-------ccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccc
Confidence 11110 0000 0112335555543 5679999999764 22233333332 1
Q ss_pred CC-CCcEEE-EEcCch-hhhhhccCCCCcceEEccCCCchhHHHHHHHHHc
Q 005181 149 SK-KCGRII-VTTRHM-NVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAF 196 (710)
Q Consensus 149 ~~-~~~~il-vTtR~~-~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 196 (710)
.+ -=|+|+ |.|-+. +....-- ..+..++++.+...+|-..+-+++..
T Consensus 548 Vp~DLSkVLFicTAN~idtIP~pL-lDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 548 VPVDLSKVLFICTANVIDTIPPPL-LDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred cccchhheEEEEeccccccCChhh-hhhhheeeccCccHHHHHHHHHHhhh
Confidence 11 113443 344442 1111100 01226899999999998888877763
No 210
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.35 E-value=0.0024 Score=73.25 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=37.6
Q ss_pred CCceeecccchhhc------------c--CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 21 HAGFSGKEDNNQLI------------Q--SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 21 ~~~~vGre~~~~~i------------~--~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
...++|.+..++.+ . ....++.++||+|+|||++|+.+++.. +...+.++.+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se 519 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSE 519 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCch
Confidence 45678888877766 1 123468899999999999999998862 23345555544
No 211
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.35 E-value=0.00023 Score=65.61 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=60.8
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhh
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHR 95 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (710)
-.++||-|+.++++ .+....+.|.||+|+||||-+..+++..--...-+++.-++.++..
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR--------------- 90 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER--------------- 90 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc---------------
Confidence 46799999999998 6777888999999999999998888774211222455544444331
Q ss_pred hcCCCCCccccchhHHHHHHHHHHHhc-------CCceEEEEecCCCcc
Q 005181 96 VANQPAPVEIHDMEEMELITTLRDHLK-------DKSYMVVFDDVWKID 137 (710)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~LlvlDdv~~~~ 137 (710)
..+.+..+++.+-+ ++--++|||.++++.
T Consensus 91 -------------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 91 -------------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred -------------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 12244555554443 334578999999886
No 212
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.35 E-value=0.00069 Score=78.05 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=79.9
Q ss_pred CCceeecccchhhc-----------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTI 89 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (710)
+.+++|.++..++| ......+.++||+|+|||++|+.+++. ....| +.+.++...+.. ++
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~----~i 389 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEA----EI 389 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHH----HH
Confidence 44577877777766 123457999999999999999999887 33333 223333221211 11
Q ss_pred HHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc------hHHHHHHhcCC--------CC-----
Q 005181 90 LKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID------FWGDVEYALLD--------SK----- 150 (710)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~------~~~~~~~~l~~--------~~----- 150 (710)
.... . .........+.+.+.... ..+-+++||+++... ....+...+.. ..
T Consensus 390 ----~g~~--~---~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~ 459 (775)
T TIGR00763 390 ----RGHR--R---TYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPF 459 (775)
T ss_pred ----cCCC--C---ceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCcee
Confidence 1100 0 000001112333343332 233478999997753 12233333221 10
Q ss_pred --CCcEEEEEcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHH
Q 005181 151 --KCGRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 151 --~~~~ilvTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
....+|.||.........- ..+..++++.+++.++-.+++..+.
T Consensus 460 d~s~v~~I~TtN~~~~i~~~L-~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 460 DLSKVIFIATANSIDTIPRPL-LDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ccCCEEEEEecCCchhCCHHH-hCCeeEEecCCCCHHHHHHHHHHHH
Confidence 1223344554432111111 1223688999999999888887664
No 213
>PRK08118 topology modulation protein; Reviewed
Probab=97.34 E-value=0.00033 Score=64.14 Aligned_cols=34 Identities=26% Similarity=0.593 Sum_probs=26.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccc-cCcCcEEE
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLK-THFNCRAW 73 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~-~~f~~~~~ 73 (710)
.|.|+|++|+||||+|+++++..... -+|+.++|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999874332 45666666
No 214
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00094 Score=72.03 Aligned_cols=154 Identities=16% Similarity=0.211 Sum_probs=87.3
Q ss_pred CCceeecccchhhc-----------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTI 89 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (710)
+.+-.|-++.-+|| .-+..+++++||+|||||.|++.+|+. ....| +-+.++.-.+-.++=-.=
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkf---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKF---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCE---EEEecCccccHHHhcccc
Confidence 56778888888877 333479999999999999999999987 55555 334554443321110000
Q ss_pred HHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc------hHHHHHHhcCCC--------------
Q 005181 90 LKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID------FWGDVEYALLDS-------------- 149 (710)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~------~~~~~~~~l~~~-------------- 149 (710)
-.+++... ..+++.++ ..+.++-+++||.+|.+. ....++..+..-
T Consensus 397 RTYIGamP-------------GrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~y 462 (782)
T COG0466 397 RTYIGAMP-------------GKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPY 462 (782)
T ss_pred ccccccCC-------------hHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCcc
Confidence 00111000 01222222 224577899999998752 233344333211
Q ss_pred CCCcEEEEEcCch-h--hhhhccCCCCcceEEccCCCchhHHHHHHHHHc
Q 005181 150 KKCGRIIVTTRHM-N--VAKYCKSSSSVHVHELETLPPNEAWKLFCRKAF 196 (710)
Q Consensus 150 ~~~~~ilvTtR~~-~--~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 196 (710)
.-...+.|||-+. + .....+ +..++++.+.+++|-.++-.++..
T Consensus 463 DLS~VmFiaTANsl~tIP~PLlD---RMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 463 DLSKVMFIATANSLDTIPAPLLD---RMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred chhheEEEeecCccccCChHHhc---ceeeeeecCCChHHHHHHHHHhcc
Confidence 1112345555542 2 112222 227999999999998888877763
No 215
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.003 Score=64.38 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=42.9
Q ss_pred ceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhhccCCCCcceEEccCCCchhHHHHHHHH
Q 005181 125 SYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEAWKLFCRK 194 (710)
Q Consensus 125 ~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~ 194 (710)
+=++|+|+++..+ ....+...+.....++.+|++|.+. .+....... -..+.+.+++.+++.+.+.+.
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR--c~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR--CRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH--hhhhcCCCCCHHHHHHHHHhc
Confidence 3344668888765 3444555555444556666666664 344343322 268899999999998888654
No 216
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.31 E-value=0.00022 Score=65.98 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=27.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEE
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWIT 75 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~ 75 (710)
.+....+.|+|+.|+|||.||.++++... .+-..+.|++
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~~v~f~~ 82 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAI--RKGYSVLFIT 82 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEE
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCcceeEee
Confidence 34567899999999999999999988742 2334567775
No 217
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.30 E-value=0.0076 Score=59.85 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLL 86 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (710)
.+-+.|.|++|+|||++|++++.. .. ...+++++....+..+++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~--lg---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARK--RD---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH--hC---CCEEEEeCCccCCHHHHh
Confidence 356779999999999999999864 21 234566666554544443
No 218
>PRK12377 putative replication protein; Provisional
Probab=97.29 E-value=0.00076 Score=65.61 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEe
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITV 76 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (710)
.+...+.|+|++|+|||+||.++++.. ......++|+++
T Consensus 99 ~~~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~ 137 (248)
T PRK12377 99 TGCTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTV 137 (248)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEH
Confidence 345689999999999999999999984 333445677654
No 219
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.29 E-value=0.00073 Score=72.71 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=56.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
.+..+++.++|++|+||||||.-+|++ ..| .|+=+++++..+...+-..|...+....
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s----------------- 380 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHS----------------- 380 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------
Confidence 666799999999999999999999877 223 5677888888777666666655554332
Q ss_pred HHHHHHh--cCCceEEEEecCCCcc
Q 005181 115 TTLRDHL--KDKSYMVVFDDVWKID 137 (710)
Q Consensus 115 ~~~~~~l--~~~~~LlvlDdv~~~~ 137 (710)
.+ .+++..||+|.+|-..
T Consensus 381 -----~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 381 -----VLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred -----ccccCCCcceEEEecccCCc
Confidence 11 2578899999997653
No 220
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.25 E-value=0.0011 Score=64.45 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEE
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWIT 75 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~ 75 (710)
...+.++|++|+|||+||.++++.. ......+++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE
Confidence 4578999999999999999999984 33334667764
No 221
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.0018 Score=67.02 Aligned_cols=137 Identities=14% Similarity=0.080 Sum_probs=77.9
Q ss_pred eeecccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCCccccc-------------------CcCcEEEEEeC
Q 005181 24 FSGKEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKT-------------------HFNCRAWITVG 77 (710)
Q Consensus 24 ~vGre~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~-------------------~f~~~~~v~~~ 77 (710)
++|-+....++ ...+..+.++||.|+||||+|.++++..-... ..+.+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 45555555554 22345699999999999999999988732111 12344444444
Q ss_pred CCCC---HHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCC
Q 005181 78 KEYK---KNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKC 152 (710)
Q Consensus 78 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~ 152 (710)
.... ..+.++++.+...... ..++.-++++|+++... ....+...+...+..
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~-----------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESP-----------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCC-----------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 3332 1222222222221110 02456789999998875 345566666677777
Q ss_pred cEEEEEcCc-hhhhhhccCCCCcceEEccCCCch
Q 005181 153 GRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPN 185 (710)
Q Consensus 153 ~~ilvTtR~-~~~~~~~~~~~~~~~~~l~~l~~~ 185 (710)
+.+|++|.. ..+....... -..+++++.+..
T Consensus 140 ~~~il~~n~~~~il~tI~SR--c~~i~f~~~~~~ 171 (325)
T COG0470 140 TRFILITNDPSKILPTIRSR--CQRIRFKPPSRL 171 (325)
T ss_pred eEEEEEcCChhhccchhhhc--ceeeecCCchHH
Confidence 777777764 3444433322 257777773333
No 222
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.24 E-value=0.0021 Score=57.45 Aligned_cols=120 Identities=14% Similarity=0.040 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC--CCHHHHHHHHHHHHhhhc----CCCCCccccc--hh-
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE--YKKNDLLRTILKEFHRVA----NQPAPVEIHD--ME- 109 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~~~~----~~~~~~~~~~--~~- 109 (710)
+.|-|++..|.||||+|...+-+. .++-..+.++-+... .+. ...+++.+.... +....-...+ .+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra--~~~g~~v~~vQFlKg~~~~g---E~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~ 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA--LGHGYRVGVVQFLKGGWKYG---ELKALERLPNIEIHRMGRGFFWTTENDEEDI 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEEeCCCCccC---HHHHHHhCCCcEEEECCCCCccCCCChHHHH
Confidence 678899999999999999888773 334445566544333 122 222333332100 0000000011 11
Q ss_pred --HHHHHHHHHHHhcC-CceEEEEecCCCc-----chHHHHHHhcCCCCCCcEEEEEcCchh
Q 005181 110 --EMELITTLRDHLKD-KSYMVVFDDVWKI-----DFWGDVEYALLDSKKCGRIIVTTRHMN 163 (710)
Q Consensus 110 --~~~~~~~~~~~l~~-~~~LlvlDdv~~~-----~~~~~~~~~l~~~~~~~~ilvTtR~~~ 163 (710)
.....+..++.+.. .-=|+|||++-.. -+.+++...+...+.+.-+|+|.|+..
T Consensus 78 ~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 78 AAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11233344445544 3459999998543 256677777777777889999999853
No 223
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.24 E-value=0.0075 Score=70.34 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=38.8
Q ss_pred CCceeecccchhhc-------c-------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 21 HAGFSGKEDNNQLI-------Q-------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 21 ~~~~vGre~~~~~i-------~-------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
...++|.+..++.+ . .....+.++||+|+|||++|+.+++.. .......+.++++.
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSE 633 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechh
Confidence 35688888887776 1 113578899999999999999998762 22223455566554
No 224
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.20 E-value=0.0011 Score=63.48 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEE
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWIT 75 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~ 75 (710)
..-.++|.|++|+||||++..+... ..+.|+.+++++
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t 48 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLIT 48 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEe
Confidence 3446779999999999999999988 778887766654
No 225
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.19 E-value=0.0013 Score=66.50 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=57.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
..+-+.|+|+.|+|||.||.++++... .....+.|+++. +++.++....... + ..+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~~------~l~~~lk~~~~~~------------~---~~~~ 211 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHFP------EFIRELKNSISDG------------S---VKEK 211 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEHH------HHHHHHHHHHhcC------------c---HHHH
Confidence 456799999999999999999999853 333346666542 3444444333110 1 1122
Q ss_pred HHHHhcCCceEEEEecCCCc--chHHH--HHHhc-CCC-CCCcEEEEEcCc
Q 005181 117 LRDHLKDKSYMVVFDDVWKI--DFWGD--VEYAL-LDS-KKCGRIIVTTRH 161 (710)
Q Consensus 117 ~~~~l~~~~~LlvlDdv~~~--~~~~~--~~~~l-~~~-~~~~~ilvTtR~ 161 (710)
+ +.++ +-=||||||+... .+|.. +...+ ... ..+-.+|+||--
T Consensus 212 l-~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 212 I-DAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred H-HHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 2 2232 4458999998543 35543 43333 222 233457777754
No 226
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0037 Score=68.98 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=102.1
Q ss_pred Cceeecccchhhc-----------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHH
Q 005181 22 AGFSGKEDNNQLI-----------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKND 84 (710)
Q Consensus 22 ~~~vGre~~~~~i-----------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (710)
.++-|-|+..++| ..-++-|.|+||+|.|||-||+++|-.. +|=|+.++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-------gVPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-------CCceeeechH-----
Confidence 4677777665555 2225778899999999999999998873 3456666543
Q ss_pred HHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHh----cCCceEEEEecCCCcc-----------------hHHHHH
Q 005181 85 LLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHL----KDKSYMVVFDDVWKID-----------------FWGDVE 143 (710)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~LlvlDdv~~~~-----------------~~~~~~ 143 (710)
+..+.+... .+.+++..+ ...+.++.+|+++... .+.++.
T Consensus 379 ---EFvE~~~g~----------------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll 439 (774)
T KOG0731|consen 379 ---EFVEMFVGV----------------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLL 439 (774)
T ss_pred ---HHHHHhccc----------------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHH
Confidence 222222111 123333333 3456899999986421 233343
Q ss_pred HhcCCCCCCcEEEE--EcCchhhhhh--ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHh
Q 005181 144 YALLDSKKCGRIIV--TTRHMNVAKY--CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKC 219 (710)
Q Consensus 144 ~~l~~~~~~~~ilv--TtR~~~~~~~--~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 219 (710)
.-+.-+.....||+ +|...++... ++.....+.+.++.-+..+..++|.-++.... ...+..++.+ |+...
T Consensus 440 ~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~----~~~e~~dl~~-~a~~t 514 (774)
T KOG0731|consen 440 VEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK----LDDEDVDLSK-LASLT 514 (774)
T ss_pred HHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC----CCcchhhHHH-HHhcC
Confidence 33333433343444 4544444333 44555567889999999999999999985432 2223445555 88888
Q ss_pred CCCchH
Q 005181 220 GGLPLA 225 (710)
Q Consensus 220 ~g~Pla 225 (710)
.|++=|
T Consensus 515 ~gf~ga 520 (774)
T KOG0731|consen 515 PGFSGA 520 (774)
T ss_pred CCCcHH
Confidence 888743
No 227
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.18 E-value=0.00027 Score=79.08 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=102.8
Q ss_pred CCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCc--cCcccccCcccceEEEeccccccccCcchhcccCCCE
Q 005181 401 DSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVD--YLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEI 478 (710)
Q Consensus 401 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~ 478 (710)
-.+|+.|.+.+...+...++...-..+|+|+.|.+++-.+. ++..-..++++|..||+|+++++.+ .++++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 46888999988888777777778888999999999997764 3444456889999999999999988 67999999999
Q ss_pred EEcCCCcccccc--ccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec
Q 005181 479 LDLKNTLVSELP--VEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN 539 (710)
Q Consensus 479 L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n 539 (710)
|.+.+=.+..-. ..+.+|++|+.|++|+........ -....-......++|+.|+.++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~--ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK--IIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH--HHHHHHHhcccCccccEEecCCc
Confidence 999876655433 257899999999999644433331 11112223334569999999987
No 228
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.11 E-value=0.0013 Score=60.26 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=29.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY 80 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~ 80 (710)
++.|+|++|+||||++.+++... ...-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcch
Confidence 36899999999999999998873 3334567888776553
No 229
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.10 E-value=0.002 Score=63.08 Aligned_cols=99 Identities=13% Similarity=0.247 Sum_probs=53.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcC-cEEEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchhH--
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFN-CRAWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDMEE-- 110 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~-~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-- 110 (710)
-.+-..++|.|.+|+|||||+.++++. .+.+|. .++++-+..... ..++.+++...=.. ..-.......+...
T Consensus 66 ig~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~-~~tvvv~~t~d~~~~~ 142 (274)
T cd01133 66 YAKGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVL-SKTALVYGQMNEPPGA 142 (274)
T ss_pred cccCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCc-ceeEEEEECCCCCHHH
Confidence 344567889999999999999999988 444554 455555655433 23344444321100 00000001111111
Q ss_pred ----HHHHHHHHHHh---cCCceEEEEecCCCc
Q 005181 111 ----MELITTLRDHL---KDKSYMVVFDDVWKI 136 (710)
Q Consensus 111 ----~~~~~~~~~~l---~~~~~LlvlDdv~~~ 136 (710)
...+-.+-+++ +++++|+++||+-..
T Consensus 143 r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 143 RARVALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 11222233444 378999999998554
No 230
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.07 E-value=0.00019 Score=67.94 Aligned_cols=110 Identities=18% Similarity=0.121 Sum_probs=67.5
Q ss_pred CCccccCCCCccEEEEEeeccCCccccccccccccceEEeecc--cCCceeEEecCCCCcccEEEeccCCCcee-eeecC
Q 005181 543 LPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGT--YDYELFHFEAGWFPKLQKLLLWDFVAVKS-VIIEK 619 (710)
Q Consensus 543 ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~ 619 (710)
+......+..|+.|++.++.++. ...|-.+++|+.|.++.| ++...++.....+|+|++|++++|.+... --..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 44444555666677777766654 345556778888888877 55555555666678888888888865420 01224
Q ss_pred CcCCCccEEEEccCCCCCCCc----cccccCCCCcEEEEe
Q 005181 620 GAMPDIRELEIGPCPLLMEIP----IGIEHLRNLKLLRFD 655 (710)
Q Consensus 620 ~~l~~L~~L~l~~n~~~~~~p----~~~~~l~~L~~L~l~ 655 (710)
..+++|..|++.+|.... +- ..|.-+++|++|+-.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence 456677788888777543 21 124556677666554
No 231
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0051 Score=66.89 Aligned_cols=173 Identities=15% Similarity=0.103 Sum_probs=95.2
Q ss_pred ccCCCCCceeecccchhhc-----------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 16 IFNFPHAGFSGKEDNNQLI-----------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 16 ~~~~~~~~~vGre~~~~~i-----------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
+|++.=+++-|-|+.-..| ..+.+-|.+|||+|.|||-+|+++|... ..-|+++..
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc-------sL~FlSVKG 738 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC-------SLNFLSVKG 738 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc-------eeeEEeecC
Confidence 4444456788877766655 2224567899999999999999998872 245677755
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc---------------hHHHHH
Q 005181 79 EYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID---------------FWGDVE 143 (710)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~---------------~~~~~~ 143 (710)
+ +++ -.+++.. .+.+.+.+...=...+++|+||.+|+.. ...+++
T Consensus 739 P----ELL---NMYVGqS-------------E~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLL 798 (953)
T KOG0736|consen 739 P----ELL---NMYVGQS-------------EENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLL 798 (953)
T ss_pred H----HHH---HHHhcch-------------HHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHH
Confidence 4 222 2222221 1133333333334689999999998742 222333
Q ss_pred HhcCCCC---CCcEEEE--EcCchhhhh--hccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHH
Q 005181 144 YALLDSK---KCGRIIV--TTRHMNVAK--YCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDIL 216 (710)
Q Consensus 144 ~~l~~~~---~~~~ilv--TtR~~~~~~--~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 216 (710)
.-+..-. ..-.+|| |.|. ++.. .+++....+.+.+++=+++|+..=..+..-... .-... -...+|+
T Consensus 799 AELDgls~~~s~~VFViGATNRP-DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkF-kLded----VdL~eiA 872 (953)
T KOG0736|consen 799 AELDGLSDSSSQDVFVIGATNRP-DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKF-KLDED----VDLVEIA 872 (953)
T ss_pred HHhhcccCCCCCceEEEecCCCc-cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHc-cCCCC----cCHHHHH
Confidence 3232212 1113333 4443 3322 245555667889999888887644433331111 00011 2356777
Q ss_pred HHhCC
Q 005181 217 AKCGG 221 (710)
Q Consensus 217 ~~~~g 221 (710)
+.|.-
T Consensus 873 k~cp~ 877 (953)
T KOG0736|consen 873 KKCPP 877 (953)
T ss_pred hhCCc
Confidence 77753
No 232
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.05 E-value=0.0015 Score=61.12 Aligned_cols=121 Identities=15% Similarity=0.134 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC---------CHHHHHHHHHHHHhhhcCCCCCccccc
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY---------KKNDLLRTILKEFHRVANQPAPVEIHD 107 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~---------~~~~~~~~i~~~l~~~~~~~~~~~~~~ 107 (710)
...++.+.|++|.|||.||.+.+-+.-..+.|+.++++.-.-.. +..+-....+.-+......-. ..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~----~~ 93 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF----GK 93 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-----T
T ss_pred hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh----Ch
Confidence 46789999999999999999998765456888888877421110 111111111111111100000 00
Q ss_pred hhHHHHHHHH------HHHhcCC---ceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCch
Q 005181 108 MEEMELITTL------RDHLKDK---SYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHM 162 (710)
Q Consensus 108 ~~~~~~~~~~------~~~l~~~---~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~ 162 (710)
...+...+.- -.+++++ ..++|+|++.+... .++...+-..+.+||+|++--..
T Consensus 94 ~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~-~~~k~ilTR~g~~skii~~GD~~ 156 (205)
T PF02562_consen 94 EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP-EELKMILTRIGEGSKIIITGDPS 156 (205)
T ss_dssp TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H-HHHHHHHTTB-TT-EEEEEE---
T ss_pred HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH-HHHHHHHcccCCCcEEEEecCce
Confidence 0111111100 1345564 46999999987652 34455566678899999976543
No 233
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.05 E-value=0.0022 Score=61.47 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=34.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
..+++.|+|++|+|||++|.+++... ......++|++... .+..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~ 54 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPE 54 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHH
Confidence 46899999999999999999998773 23346789998875 4443
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.0015 Score=64.09 Aligned_cols=76 Identities=28% Similarity=0.278 Sum_probs=47.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
++...++++|++|+|||.||.++++... ...-.+.|+++ .+++.++....... ....
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~~------~el~~~Lk~~~~~~---------------~~~~ 159 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFITA------PDLLSKLKAAFDEG---------------RLEE 159 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEEH------HHHHHHHHHHHhcC---------------chHH
Confidence 3678899999999999999999999953 33445677653 34444444443221 1122
Q ss_pred HHHHHhcCCceEEEEecCCC
Q 005181 116 TLRDHLKDKSYMVVFDDVWK 135 (710)
Q Consensus 116 ~~~~~l~~~~~LlvlDdv~~ 135 (710)
.+...++ +-=||||||+-.
T Consensus 160 ~l~~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 160 KLLRELK-KVDLLIIDDIGY 178 (254)
T ss_pred HHHHHhh-cCCEEEEecccC
Confidence 2333232 223889999865
No 235
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.013 Score=61.05 Aligned_cols=151 Identities=12% Similarity=0.094 Sum_probs=83.8
Q ss_pred ccCCCCCceeecccchhhc-----------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 16 IFNFPHAGFSGKEDNNQLI-----------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 16 ~~~~~~~~~vGre~~~~~i-----------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
..+..=+++-|-|+.-+++ ..=++-|.++||+|.|||-||++++-.. +|=|+..+.
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-------~VPFF~~sG 370 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-------GVPFFYASG 370 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-------CCCeEeccc
Confidence 3344445677876654443 1225788999999999999999998873 222333332
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHh----cCCceEEEEecCCCcc-------------hHHH
Q 005181 79 EYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHL----KDKSYMVVFDDVWKID-------------FWGD 141 (710)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~LlvlDdv~~~~-------------~~~~ 141 (710)
. . +.+++-. ..+.+++..+ +.-+++|++|.+|... .+.+
T Consensus 371 S-E----FdEm~VG-------------------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQ 426 (752)
T KOG0734|consen 371 S-E----FDEMFVG-------------------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQ 426 (752)
T ss_pred c-c----hhhhhhc-------------------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHH
Confidence 2 1 1111111 2244444444 3457999999997531 3344
Q ss_pred HHHhcCCCCCCc-EEEE--EcCchhhhhh-ccCCCCcceEEccCCCchhHHHHHHHHHcC
Q 005181 142 VEYALLDSKKCG-RIIV--TTRHMNVAKY-CKSSSSVHVHELETLPPNEAWKLFCRKAFG 197 (710)
Q Consensus 142 ~~~~l~~~~~~~-~ilv--TtR~~~~~~~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 197 (710)
++.-+.-+.... -|+| |.+.+.+-.. .++......+.|+.-+-.--.++|..+...
T Consensus 427 LLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k 486 (752)
T KOG0734|consen 427 LLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK 486 (752)
T ss_pred HHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc
Confidence 444444443332 3444 3343333222 233444456667776766677888777643
No 236
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=7.9e-05 Score=70.39 Aligned_cols=88 Identities=19% Similarity=0.122 Sum_probs=65.2
Q ss_pred cccccccccceEEeecccCCceeEEecCCCCcccEEEeccC--CCceeeeecCCcCCCccEEEEccCCCCC--CCccccc
Q 005181 569 RVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDF--VAVKSVIIEKGAMPDIRELEIGPCPLLM--EIPIGIE 644 (710)
Q Consensus 569 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~~~ 644 (710)
.....+.+|+.|++.+..+++. ..+-.+|+|+.|.++.| +....++.....+|+|++|++++|++.. .+ ..+.
T Consensus 37 gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~ 113 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLK 113 (260)
T ss_pred cccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhh
Confidence 3444566777777777766554 34557889999999999 6666666666778999999999999752 12 1356
Q ss_pred cCCCCcEEEEecCcH
Q 005181 645 HLRNLKLLRFDCMVK 659 (710)
Q Consensus 645 ~l~~L~~L~l~~~~~ 659 (710)
.+.+|..|++.+|+.
T Consensus 114 ~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSV 128 (260)
T ss_pred hhcchhhhhcccCCc
Confidence 778888999998854
No 237
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.01 E-value=0.0023 Score=60.15 Aligned_cols=57 Identities=28% Similarity=0.244 Sum_probs=41.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHHHHHHHhhh
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRTILKEFHRV 96 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~ 96 (710)
+++++++||.|+||||.+.+++.+...+ -..+..++.+... ...+.++.+++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4789999999999999999998875333 4467778776554 3456777777777655
No 238
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.00 E-value=0.002 Score=65.64 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEe
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITV 76 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (710)
.....+.|+|+.|+|||+||.++++.. ......|+|++.
T Consensus 181 ~~~~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~ 219 (329)
T PRK06835 181 KNNENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTA 219 (329)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEH
Confidence 345889999999999999999999984 233346777654
No 239
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.00 E-value=0.0026 Score=61.77 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=34.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKK 82 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (710)
+..+++.|+|++|+|||++|.+++... ......++|++.. ..+.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~ 64 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSP 64 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCH
Confidence 446799999999999999999998773 2334678999887 4443
No 240
>PRK04132 replication factor C small subunit; Provisional
Probab=96.98 E-value=0.013 Score=66.69 Aligned_cols=153 Identities=14% Similarity=0.032 Sum_probs=94.9
Q ss_pred EEc--CCCCCHHHHHHHhhCCcccccCc-CcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHH
Q 005181 43 VVG--EGGLGKTTVAGKIFNSEGLKTHF-NCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRD 119 (710)
Q Consensus 43 i~G--~~GvGKTtla~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (710)
+.| |.++||||+|.+++++.-. ..+ ..++-++++.... .+.++++...+.....
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rg-id~IR~iIk~~a~~~~--------------------- 625 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFG-ENWRHNFLELNASDERG-INVIREKVKEFARTKP--------------------- 625 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCccc-HHHHHHHHHHHHhcCC---------------------
Confidence 347 8999999999999988311 122 2466667665422 2344444444332110
Q ss_pred HhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhccCCCCcceEEccCCCchhHHHHHHHHHc
Q 005181 120 HLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAF 196 (710)
Q Consensus 120 ~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 196 (710)
.-..+.-++|+|+++... ....+...+-..+..+++|.++.+ ..+....... -+.+.+++++.++....+.+.+.
T Consensus 626 ~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSR--C~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 626 IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR--CAIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred cCCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhh--ceEEeCCCCCHHHHHHHHHHHHH
Confidence 001245799999999886 455566666665566666665554 3443333322 27899999999999888887764
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhCCCchH
Q 005181 197 GPSSGGSCPSELRELSRDILAKCGGLPLA 225 (710)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 225 (710)
... ..-..+....|++.++|.+..
T Consensus 704 ~Eg-----i~i~~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 704 NEG-----LELTEEGLQAILYIAEGDMRR 727 (846)
T ss_pred hcC-----CCCCHHHHHHHHHHcCCCHHH
Confidence 321 111246788999999998743
No 241
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.028 Score=57.88 Aligned_cols=149 Identities=16% Similarity=0.051 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEE-EEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAW-ITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
|--.++||+|.|||+++.++|+.. .|+ || +.+.......+ +
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~yd--IydLeLt~v~~n~d--------------------------------L 277 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYD--IYDLELTEVKLDSD--------------------------------L 277 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCc--eEEeeeccccCcHH--------------------------------H
Confidence 667799999999999999998873 233 33 23332222111 2
Q ss_pred HHHhc--CCceEEEEecCCCcc--------------------hHHHHHHhcC--CCC-CCcEEEE-EcCchhhh--hhcc
Q 005181 118 RDHLK--DKSYMVVFDDVWKID--------------------FWGDVEYALL--DSK-KCGRIIV-TTRHMNVA--KYCK 169 (710)
Q Consensus 118 ~~~l~--~~~~LlvlDdv~~~~--------------------~~~~~~~~l~--~~~-~~~~ilv-TtR~~~~~--~~~~ 169 (710)
+..|. ..+-+||+.|+|-.- .+.-++..+. ++. .+-|||| ||-..+-. ..++
T Consensus 278 r~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlR 357 (457)
T KOG0743|consen 278 RHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLR 357 (457)
T ss_pred HHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcC
Confidence 22222 245677788875320 1222333332 222 2336666 77664322 2234
Q ss_pred CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhh
Q 005181 170 SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLL 233 (710)
Q Consensus 170 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 233 (710)
+......+.++-=+.+....|+..+...+. + .....+|.+...|.-+.-+.++..+
T Consensus 358 pGRmDmhI~mgyCtf~~fK~La~nYL~~~~-----~---h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 358 PGRMDMHIYMGYCTFEAFKTLASNYLGIEE-----D---HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCcceeEEEcCCCCHHHHHHHHHHhcCCCC-----C---cchhHHHHHHhhcCccCHHHHHHHH
Confidence 444446788888899988899888874321 1 2344455444455444444444444
No 242
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.97 E-value=0.004 Score=71.15 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=82.9
Q ss_pred CCceeecccchhhc-----------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTI 89 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (710)
+.+.+|.++.-++| ......++++||+|+||||+|+.++.. ....| +.+.++...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 45688887777766 134568999999999999999999876 33322 223444332321111110
Q ss_pred HHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcch------HHHHHHhcCCC--------------
Q 005181 90 LKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKIDF------WGDVEYALLDS-------------- 149 (710)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~~------~~~~~~~l~~~-------------- 149 (710)
....+. ....+...+... ....-+++||.++.... .+.+...+...
T Consensus 396 ~~~~g~-------------~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~ 461 (784)
T PRK10787 396 RTYIGS-------------MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY 461 (784)
T ss_pred hccCCC-------------CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccc
Confidence 001100 011223333322 22345789999976531 34444443321
Q ss_pred C-CCcEEEEEcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHH
Q 005181 150 K-KCGRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 150 ~-~~~~ilvTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
. ....+|.|+....+..-.. .+..++++.+++.+|-.++..++.
T Consensus 462 dls~v~~i~TaN~~~i~~aLl--~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 462 DLSDVMFVATSNSMNIPAPLL--DRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cCCceEEEEcCCCCCCCHHHh--cceeeeecCCCCHHHHHHHHHHhh
Confidence 1 2223444554433222211 223688999999999888887775
No 243
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.02 Score=57.48 Aligned_cols=151 Identities=8% Similarity=-0.009 Sum_probs=87.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCccc--------ccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchh
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGL--------KTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDME 109 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~--------~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 109 (710)
.++..++|+.|+||+++|.+++...-. ..+-+.+.++...... ..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~---------------------------i~ 70 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD---------------------------LS 70 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc---------------------------CC
Confidence 466779999999999999998776311 1111123333110110 11
Q ss_pred HHHHHHHHHHH--h---cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEc-CchhhhhhccCCCCcceEEccC
Q 005181 110 EMELITTLRDH--L---KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTT-RHMNVAKYCKSSSSVHVHELET 181 (710)
Q Consensus 110 ~~~~~~~~~~~--l---~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTt-R~~~~~~~~~~~~~~~~~~l~~ 181 (710)
.+++.+.+.+. . .+.+=++|+|+++... ....+...+...+..+.+|++| ....+...... +.+.+++.+
T Consensus 71 vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~S--Rc~~~~f~~ 148 (299)
T PRK07132 71 KSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVS--RCQVFNVKE 148 (299)
T ss_pred HHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHh--CeEEEECCC
Confidence 12222222211 0 1466788999998775 4566888888877777766655 44455544332 227899999
Q ss_pred CCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHH
Q 005181 182 LPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVA 228 (710)
Q Consensus 182 l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 228 (710)
+++++..+.+.... . ..+.+..++...+|.-.|+..
T Consensus 149 l~~~~l~~~l~~~~--~---------~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 149 PDQQKILAKLLSKN--K---------EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCHHHHHHHHHHcC--C---------ChhHHHHHHHHcCCHHHHHHH
Confidence 99999887776541 1 113455556566663345544
No 244
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.95 E-value=0.0043 Score=69.77 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=72.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
.+-|.|+|++|+|||++|+.++.. ....| +.++.+. +. ...... ....+...+
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~~----~~~~g~------------~~~~~~~~f 237 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------FV----EMFVGV------------GASRVRDMF 237 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------hH----Hhhhcc------------cHHHHHHHH
Confidence 345999999999999999999876 22222 2332221 11 000000 111223333
Q ss_pred HHHhcCCceEEEEecCCCcc------------h----HHHHHHhcCCCC--CCcEEEEEcCchhhhhhc--cCCCCcceE
Q 005181 118 RDHLKDKSYMVVFDDVWKID------------F----WGDVEYALLDSK--KCGRIIVTTRHMNVAKYC--KSSSSVHVH 177 (710)
Q Consensus 118 ~~~l~~~~~LlvlDdv~~~~------------~----~~~~~~~l~~~~--~~~~ilvTtR~~~~~~~~--~~~~~~~~~ 177 (710)
.......+.++++|+++... . +..+...+.... .+-.+|.||..++..... +.......+
T Consensus 238 ~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i 317 (644)
T PRK10733 238 EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 317 (644)
T ss_pred HHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEE
Confidence 33334567899999986641 1 122222222222 233444466665433322 222334678
Q ss_pred EccCCCchhHHHHHHHHHcC
Q 005181 178 ELETLPPNEAWKLFCRKAFG 197 (710)
Q Consensus 178 ~l~~l~~~ea~~l~~~~~~~ 197 (710)
.++..+.++-.+++..+...
T Consensus 318 ~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 318 VVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred EcCCCCHHHHHHHHHHHhhc
Confidence 89999998888998888643
No 245
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.016 Score=62.54 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=86.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
..-|.++||+|.|||.||.+++.. -..-|+++..+ ++ +.++++.. .+.+...+
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~-------~~~~fisvKGP----El---L~KyIGaS-------------Eq~vR~lF 753 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASN-------SNLRFISVKGP----EL---LSKYIGAS-------------EQNVRDLF 753 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhh-------CCeeEEEecCH----HH---HHHHhccc-------------HHHHHHHH
Confidence 356889999999999999999876 12456666554 11 12222211 11233333
Q ss_pred HHHhcCCceEEEEecCCCcc-------------hHHHHHHhcCC--CCCCcEEEE-EcCchhhhhh-ccCCCCcceEEcc
Q 005181 118 RDHLKDKSYMVVFDDVWKID-------------FWGDVEYALLD--SKKCGRIIV-TTRHMNVAKY-CKSSSSVHVHELE 180 (710)
Q Consensus 118 ~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~--~~~~~~ilv-TtR~~~~~~~-~~~~~~~~~~~l~ 180 (710)
...-..++++++||..++.. ...+++..+.- .-.|--|+- |||..-+-.. .+...-.+.+.-+
T Consensus 754 ~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~ 833 (952)
T KOG0735|consen 754 ERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCP 833 (952)
T ss_pred HHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCC
Confidence 33334589999999998752 23444444432 123322222 7776433222 3333334556666
Q ss_pred CCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 181 TLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 181 ~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
.-++.|-.++|...+..- ........+.++....|+.
T Consensus 834 ~P~~~eRl~il~~ls~s~------~~~~~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 834 LPDEPERLEILQVLSNSL------LKDTDVDLECLAQKTDGFT 870 (952)
T ss_pred CCCcHHHHHHHHHHhhcc------CCccccchHHHhhhcCCCc
Confidence 677788888887776311 1112234566777777765
No 246
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0087 Score=65.74 Aligned_cols=134 Identities=16% Similarity=0.149 Sum_probs=77.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
...+.+.++||+|.|||.+|++++.. ....| +.+... ++.....+. ....+.+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~f-----i~v~~~--------~l~sk~vGe------------sek~ir~ 326 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRF-----ISVKGS--------ELLSKWVGE------------SEKNIRE 326 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeE-----EEeeCH--------HHhccccch------------HHHHHHH
Confidence 34568999999999999999999985 33333 333221 111111111 1113333
Q ss_pred HHHHHhcCCceEEEEecCCCcc-------------hHHHHHHhcCCCCCCc--EEEEEcCchhhhhhc--cCCCCcceEE
Q 005181 116 TLRDHLKDKSYMVVFDDVWKID-------------FWGDVEYALLDSKKCG--RIIVTTRHMNVAKYC--KSSSSVHVHE 178 (710)
Q Consensus 116 ~~~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~~~~~~--~ilvTtR~~~~~~~~--~~~~~~~~~~ 178 (710)
.+...-+..+.++++|+++... ...+++..+....... .+|-+|-.++..... ........+.
T Consensus 327 ~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~ 406 (494)
T COG0464 327 LFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIY 406 (494)
T ss_pred HHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEee
Confidence 4444445788999999997532 2222333332222222 233344444333322 1123346899
Q ss_pred ccCCCchhHHHHHHHHHc
Q 005181 179 LETLPPNEAWKLFCRKAF 196 (710)
Q Consensus 179 l~~l~~~ea~~l~~~~~~ 196 (710)
+++-+.++..++|..+..
T Consensus 407 v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 407 VPLPDLEERLEIFKIHLR 424 (494)
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 999999999999999985
No 247
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.93 E-value=0.0034 Score=63.96 Aligned_cols=96 Identities=15% Similarity=0.232 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCc-Cc-EEEEEeCCCC-CHHHHHHHHHHHHhhhcCCCCCccccchhHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHF-NC-RAWITVGKEY-KKNDLLRTILKEFHRVANQPAPVEIHDMEEMEL 113 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f-~~-~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 113 (710)
.-..++|+|++|+|||||++++++. +.... +. ++|+.+.... +..++.+.+...+...... .+.. ........
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d-e~~~-~~~~v~~~ 207 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD-RPPD-EHIRVAEL 207 (380)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC-CCHH-HHHHHHHH
Confidence 3456689999999999999999886 33322 33 3565555544 4566666666544332110 1111 11111111
Q ss_pred HHHHHHHh--cCCceEEEEecCCCc
Q 005181 114 ITTLRDHL--KDKSYMVVFDDVWKI 136 (710)
Q Consensus 114 ~~~~~~~l--~~~~~LlvlDdv~~~ 136 (710)
...+-+++ ++++++||+|++...
T Consensus 208 ~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 208 VLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 22222222 478999999999543
No 248
>PRK04296 thymidine kinase; Provisional
Probab=96.91 E-value=0.0011 Score=62.38 Aligned_cols=113 Identities=10% Similarity=-0.019 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHH
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLR 118 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (710)
.++.++|+.|.||||+|..++.+. ..+...++++.- ..+.+.....++.+++.... . .......++...+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~----~-~~~~~~~~~~~~~~ 73 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVFKP--AIDDRYGEGKVVSRIGLSRE----A-IPVSSDTDIFELIE 73 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEEec--cccccccCCcEecCCCCccc----c-eEeCChHHHHHHHH
Confidence 477899999999999999998873 333344444421 11112223334444432110 0 01112334555555
Q ss_pred HHhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCchh
Q 005181 119 DHLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHMN 163 (710)
Q Consensus 119 ~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~~ 163 (710)
+ ..++.-++|+|.+.-.+ ++.++...+ ...|..|++|.++.+
T Consensus 74 ~-~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 74 E-EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred h-hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 5 33344689999996542 222333322 345668999988854
No 249
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.91 E-value=0.00054 Score=59.19 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+|+|.|++|+||||+|+++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 250
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.90 E-value=0.007 Score=70.34 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=37.2
Q ss_pred CCceeecccchhhc-------c------CC-CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeC
Q 005181 21 HAGFSGKEDNNQLI-------Q------SE-RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVG 77 (710)
Q Consensus 21 ~~~~vGre~~~~~i-------~------~~-~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (710)
...++|.+..++.+ . .. ...+.++|+.|+|||++|+.+++.. .......+.++++
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~s 635 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMS 635 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhH
Confidence 34688888887766 1 11 2578899999999999999998762 2222334555544
No 251
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.89 E-value=0.0016 Score=75.38 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=32.1
Q ss_pred CCceeecccchhhc--------------cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 21 HAGFSGKEDNNQLI--------------QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 21 ~~~~vGre~~~~~i--------------~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...++|.+..++.+ .....++.++||+|+|||.+|+++++.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~ 619 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45688888777766 112357899999999999999999776
No 252
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.88 E-value=0.028 Score=55.42 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=95.9
Q ss_pred CCCceeecccchhhc---------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHHH
Q 005181 20 PHAGFSGKEDNNQLI---------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRTI 89 (710)
Q Consensus 20 ~~~~~vGre~~~~~i---------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i 89 (710)
+...++|-.++-..+ .++...|.+.||.|.|||++......+ .+..-...+-+...... +....+.+|
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 677899988887766 566677779999999999998776665 22222333444444332 234466777
Q ss_pred HHHHhhhcCCCCCccccchhHHHHHHHHHHHhcC------CceEEEEecCCCcchH-H-HHHHhc-----CCCCCCcEEE
Q 005181 90 LKEFHRVANQPAPVEIHDMEEMELITTLRDHLKD------KSYMVVFDDVWKIDFW-G-DVEYAL-----LDSKKCGRII 156 (710)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~LlvlDdv~~~~~~-~-~~~~~l-----~~~~~~~~il 156 (710)
.+++........ .....-.+..+.+-+.|+. -++++|+|.+|-.... . -+...+ ....+-|-|-
T Consensus 100 ~rql~~e~~~~~---k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig 176 (408)
T KOG2228|consen 100 TRQLALELNRIV---KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIG 176 (408)
T ss_pred HHHHHHHHhhhh---eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEE
Confidence 777665432211 0111112345555555542 3589999998765311 1 111111 1223456677
Q ss_pred EEcCchhhh---h--hccCCCCcceEEccCCCchhHHHHHHHHHc
Q 005181 157 VTTRHMNVA---K--YCKSSSSVHVHELETLPPNEAWKLFCRKAF 196 (710)
Q Consensus 157 vTtR~~~~~---~--~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 196 (710)
+|||-.-.. . +.+...+ .++-.++++-++-..+++.-..
T Consensus 177 ~Ttrld~lE~LEKRVKSRFshr-~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 177 VTTRLDILELLEKRVKSRFSHR-VIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred eeccccHHHHHHHHHHhhcccc-eeeccCCCChHHHHHHHHHHhc
Confidence 899863211 0 1111110 3556677777777888777763
No 253
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.88 E-value=0.014 Score=52.71 Aligned_cols=132 Identities=10% Similarity=0.066 Sum_probs=71.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEe---CCC--------------------------------
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITV---GKE-------------------------------- 79 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~---~~~-------------------------------- 79 (710)
-+...++.|+|++|.||||+.+-++...+. -.+.+|+.- +.-
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 455678999999999999999999876321 123344421 000
Q ss_pred -------CC---HHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecC----CCcchHHHHHHh
Q 005181 80 -------YK---KNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDV----WKIDFWGDVEYA 145 (710)
Q Consensus 80 -------~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv----~~~~~~~~~~~~ 145 (710)
.. ...-..+.++.++...+....+..-... ++..-.|...+-.++-+|+-|.- |....|+-+.-.
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGG-EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lf 180 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGG-EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLF 180 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCch-HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHH
Confidence 01 1112223333333322211111111111 12333455556677888888863 333344433322
Q ss_pred cCCCCCCcEEEEEcCchhhhhhccC
Q 005181 146 LLDSKKCGRIIVTTRHMNVAKYCKS 170 (710)
Q Consensus 146 l~~~~~~~~ilvTtR~~~~~~~~~~ 170 (710)
-.-...|..|+++|-+..+...+..
T Consensus 181 eeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 181 EEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HHHhhcCcEEEEEeccHHHHHhccC
Confidence 2334578899999999988877644
No 254
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.013 Score=56.51 Aligned_cols=152 Identities=12% Similarity=0.124 Sum_probs=78.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
-+-|.++||+|.||+.||++++... ... |++++.. +++..+.... +.+...+
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEA--nST-----FFSvSSS--------DLvSKWmGES-------------EkLVknL 217 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEA--NST-----FFSVSSS--------DLVSKWMGES-------------EKLVKNL 217 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhc--CCc-----eEEeehH--------HHHHHHhccH-------------HHHHHHH
Confidence 4789999999999999999998873 232 3444432 3444443321 2333334
Q ss_pred HHHhc-CCceEEEEecCCCcc---------hHHHH----HHhc---CCCCCCcEEEEEcCchhhhhhccCCCCcceEEcc
Q 005181 118 RDHLK-DKSYMVVFDDVWKID---------FWGDV----EYAL---LDSKKCGRIIVTTRHMNVAKYCKSSSSVHVHELE 180 (710)
Q Consensus 118 ~~~l~-~~~~LlvlDdv~~~~---------~~~~~----~~~l---~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~l~ 180 (710)
-+..+ .++-+|++|.++..- .-..+ +... .....|--|+=.|--+.+....-.......+.+
T Consensus 218 FemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI- 296 (439)
T KOG0739|consen 218 FEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI- 296 (439)
T ss_pred HHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-
Confidence 43333 578899999997531 11111 1111 122233233335555544444322222234444
Q ss_pred CCCchhH-HHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 181 TLPPNEA-WKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 181 ~l~~~ea-~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
||.+..| ..+|.-++... + ..-.....+++.+...|+.
T Consensus 297 PLPe~~AR~~MF~lhlG~t--p---~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 297 PLPEAHARARMFKLHLGDT--P---HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred cCCcHHHhhhhheeccCCC--c---cccchhhHHHHHhhcCCCC
Confidence 4444444 46776665321 1 1123345666777776653
No 255
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0056 Score=55.76 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=66.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC-----CCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHH
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK-----EYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMEL 113 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~-----~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 113 (710)
..|.+.|.+|+||||+|++++... +..-..++.+.... +....-..++-.++.... ..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L--~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~k---------------s~ 64 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL--RQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLK---------------SV 64 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH--HHhhhhccccchhhhhheecccccchHHHHHHHHHHH---------------HH
Confidence 357899999999999999998762 22222222211100 000000111112211111 22
Q ss_pred HHHHHHHhcCCceEEEEecCCCcchHHHHHHhcCCCCCCc-EEEEEcCchhhhhhccCCCCcceEEccCCCchhHHHHHH
Q 005181 114 ITTLRDHLKDKSYMVVFDDVWKIDFWGDVEYALLDSKKCG-RIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFC 192 (710)
Q Consensus 114 ~~~~~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~-~ilvTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~ 192 (710)
...+...++ .+++|.||......+..-+........-. +||-+--..+++-... .-.=+|..++-..+|..
T Consensus 65 ~rlldSalk--n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN------~ergepip~Evl~qly~ 136 (261)
T COG4088 65 ERLLDSALK--NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN------RERGEPIPEEVLRQLYD 136 (261)
T ss_pred HHHHHHHhc--ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh------ccCCCCCCHHHHHHHHH
Confidence 223444444 88999999988775555444433322222 3444444444443322 22335666666667766
Q ss_pred HHH
Q 005181 193 RKA 195 (710)
Q Consensus 193 ~~~ 195 (710)
+.-
T Consensus 137 RfE 139 (261)
T COG4088 137 RFE 139 (261)
T ss_pred hhc
Confidence 653
No 256
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.84 E-value=0.0031 Score=69.15 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=32.7
Q ss_pred Cceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 22 AGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++++|.+..++.+ .....-+.|+|++|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4689999888777 344567789999999999999998753
No 257
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.84 E-value=0.0053 Score=60.00 Aligned_cols=95 Identities=13% Similarity=0.191 Sum_probs=56.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCC-------------CC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQ-------------PA 101 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~-------------~~ 101 (710)
-+..+++.|+|++|+|||++|.+++... ...-..++|++.... ..++.+.+ ..++..... ..
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~--~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGA--LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHH--HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccc
Confidence 3446899999999999999999997652 223457889888654 34444332 222211100 00
Q ss_pred CccccchhHHHHHHHHHHHhcC-CceEEEEecCC
Q 005181 102 PVEIHDMEEMELITTLRDHLKD-KSYMVVFDDVW 134 (710)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~-~~~LlvlDdv~ 134 (710)
.......+.+.+...+.+.+.. +.-++|+|.+.
T Consensus 97 ~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 97 GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0011112334666677766654 55689999975
No 258
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.83 E-value=0.0031 Score=73.25 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=31.7
Q ss_pred CCceeecccchhhc------------cC--CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 21 HAGFSGKEDNNQLI------------QS--ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 21 ~~~~vGre~~~~~i------------~~--~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...++|.+..+..+ .+ ....+.++||.|+|||++|+.+++.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~ 562 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY 562 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 46688888877766 11 1346789999999999999999876
No 259
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.82 E-value=0.003 Score=67.29 Aligned_cols=185 Identities=12% Similarity=0.065 Sum_probs=103.8
Q ss_pred Cceeecccchhhc------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhh
Q 005181 22 AGFSGKEDNNQLI------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHR 95 (710)
Q Consensus 22 ~~~vGre~~~~~i------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (710)
+++||-|-.+.-| ..-.....+.|+-|+||||+|+-++...-..+ + ....++......+.|...-..
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCCcc
Confidence 4578988887776 33356778999999999999999987631111 1 112223333333333322000
Q ss_pred hcCCCCCccccchhHHHHHHHHHHHh-----cCCceEEEEecCCCc--chHHHHHHhcCCCCCCcEEEEEcCc-hhhhhh
Q 005181 96 VANQPAPVEIHDMEEMELITTLRDHL-----KDKSYMVVFDDVWKI--DFWGDVEYALLDSKKCGRIIVTTRH-MNVAKY 167 (710)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~~ 167 (710)
..-+-..++.. ..++ ++.+++.. +++-=+.|+|.|.-. ..|..++.-+-..+..-++|+.|.+ ..+...
T Consensus 89 DviEiDaASn~--gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 89 DVIEIDAASNT--GVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred cchhhhhhhcc--ChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 00000000111 1112 22233322 234457889999654 3677777777666666666665555 344443
Q ss_pred ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 168 CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 168 ~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
.... -+.+..+.++.++-...+...+..+ .....++...-|++...|..
T Consensus 166 IlSR--cq~f~fkri~~~~I~~~L~~i~~~E-----~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 166 ILSR--CQRFDFKRLDLEEIAKHLAAILDKE-----GINIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhc--cccccccCCCHHHHHHHHHHHHHhc-----CCccCHHHHHHHHHHcCCCh
Confidence 3222 2789999999999888888887433 12334456666777777744
No 260
>PRK14974 cell division protein FtsY; Provisional
Probab=96.79 E-value=0.01 Score=60.56 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=49.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHHHHHHHhhhcCCCCCccccchhHHHH-H
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRTILKEFHRVANQPAPVEIHDMEEMEL-I 114 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~ 114 (710)
+..+|+++|+.|+||||.+.+++... ...-..++.+...... ...+.+......++.... ......+...+ .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l--~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~----~~~~g~dp~~v~~ 212 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL--KKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVI----KHKYGADPAAVAY 212 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCcee----cccCCCCHHHHHH
Confidence 46899999999999999998888763 2222244455433221 223344444555443221 11111222222 2
Q ss_pred HHHHHHh-cCCceEEEEecCCCc
Q 005181 115 TTLRDHL-KDKSYMVVFDDVWKI 136 (710)
Q Consensus 115 ~~~~~~l-~~~~~LlvlDdv~~~ 136 (710)
+.+...- .+.. ++++|-+-..
T Consensus 213 ~ai~~~~~~~~D-vVLIDTaGr~ 234 (336)
T PRK14974 213 DAIEHAKARGID-VVLIDTAGRM 234 (336)
T ss_pred HHHHHHHhCCCC-EEEEECCCcc
Confidence 3333222 2333 8899998654
No 261
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0037 Score=69.53 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=90.2
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcc---cccCc-CcEEEEEeCCCCCHHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEG---LKTHF-NCRAWITVGKEYKKNDLLRTILK 91 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~---~~~~f-~~~~~v~~~~~~~~~~~~~~i~~ 91 (710)
-+.++|||+|+.+. ......-.++|.+|||||++|.-+|.+-- ..... +..++ +++ +..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~-sLD-----------~g~ 236 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY-SLD-----------LGS 236 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE-Eec-----------HHH
Confidence 46799999999987 44445567899999999999988887631 11111 12222 111 011
Q ss_pred HHhhhcCCCCCccccchhHHHHHHHHHHHhc-CCceEEEEecCCCcc----------hHHHHHHhcCCCCCCcEEEEEcC
Q 005181 92 EFHRVANQPAPVEIHDMEEMELITTLRDHLK-DKSYMVVFDDVWKID----------FWGDVEYALLDSKKCGRIIVTTR 160 (710)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~LlvlDdv~~~~----------~~~~~~~~l~~~~~~~~ilvTtR 160 (710)
-.... ... .+-++....+...++ ..+++|++|.+...- +...+..+....+.--+|--||-
T Consensus 237 LvAGa-------kyR-GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~ 308 (786)
T COG0542 237 LVAGA-------KYR-GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTL 308 (786)
T ss_pred Hhccc-------ccc-CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccH
Confidence 11111 001 122233444444443 458999999986531 22333334333333335666877
Q ss_pred chh---hhhhccCCCCcceEEccCCCchhHHHHHHHHHc
Q 005181 161 HMN---VAKYCKSSSSVHVHELETLPPNEAWKLFCRKAF 196 (710)
Q Consensus 161 ~~~---~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 196 (710)
++. +........+++.+.|...+.+++..+++....
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHH
Confidence 643 222223344568899999999999999987753
No 262
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.78 E-value=0.0045 Score=59.81 Aligned_cols=43 Identities=23% Similarity=0.192 Sum_probs=32.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY 80 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~ 80 (710)
+..+++.|+|++|+||||+|.+++... ...-..++|++.....
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLS 59 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCC
Confidence 335789999999999999999998773 3334467888765443
No 263
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0064 Score=62.61 Aligned_cols=92 Identities=23% Similarity=0.233 Sum_probs=51.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC-CCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE-YKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
...++++++||.|+||||++.+++...........+.+++.... ....+.+..+.+.++..... .. +..++.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~----~~---~~~~l~ 207 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA----VK---DGGDLQ 207 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe----cC---CcccHH
Confidence 34679999999999999999999887322222235666664432 23445555555555432211 11 111222
Q ss_pred HHHHHHhcCCceEEEEecCCCc
Q 005181 115 TTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 115 ~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
..+ ..+.++. ++++|.+-..
T Consensus 208 ~~l-~~l~~~D-lVLIDTaG~~ 227 (374)
T PRK14722 208 LAL-AELRNKH-MVLIDTIGMS 227 (374)
T ss_pred HHH-HHhcCCC-EEEEcCCCCC
Confidence 323 3344444 5568988543
No 264
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0092 Score=56.37 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..++-|.++||+|.|||-+|++++++
T Consensus 209 dppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhcc
Confidence 34577889999999999999999998
No 265
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.74 E-value=0.0095 Score=55.13 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=27.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
++++.|++|+||||+++.++... ...-..++.++++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~--~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL--KKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEEcCC
Confidence 57899999999999999998763 22323456666543
No 266
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.013 Score=59.97 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=49.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
+.++|+|+|++|+||||++..++... ...-..+.++..+... ...+.+....+.+..+. ....+..++.+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------~v~~d~~~L~~ 310 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------IAVRDEAAMTR 310 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------EecCCHHHHHH
Confidence 45899999999999999999998763 2222345566654432 12223333333322111 11123445555
Q ss_pred HHHHHhcC-CceEEEEecCCC
Q 005181 116 TLRDHLKD-KSYMVVFDDVWK 135 (710)
Q Consensus 116 ~~~~~l~~-~~~LlvlDdv~~ 135 (710)
.+...-.. +-=++++|-.-.
T Consensus 311 aL~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 311 ALTYFKEEARVDYILIDTAGK 331 (436)
T ss_pred HHHHHHhccCCCEEEEeCccc
Confidence 55443221 234677887744
No 267
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.01 Score=55.68 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=46.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
-..++-|.++||+|.|||.||++++++ ....| +.+.. .+...+..+.+ +..+.
T Consensus 186 idpprgvllygppg~gktml~kava~~--t~a~f-----irvvg--------sefvqkylgeg------------prmvr 238 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANH--TTAAF-----IRVVG--------SEFVQKYLGEG------------PRMVR 238 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhc--cchhe-----eeecc--------HHHHHHHhccC------------cHHHH
Confidence 344677889999999999999999998 55544 33221 12222222211 12344
Q ss_pred HHHHHHhcCCceEEEEecCCCc
Q 005181 115 TTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 115 ~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
+.++-.-.+-+-++++|.++..
T Consensus 239 dvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 239 DVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred HHHHHHhccCCcEEEeehhhhH
Confidence 4455444567788999998753
No 268
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.73 E-value=0.0018 Score=56.66 Aligned_cols=82 Identities=7% Similarity=-0.011 Sum_probs=30.0
Q ss_pred ccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCcc
Q 005181 547 IFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIR 626 (710)
Q Consensus 547 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 626 (710)
|.++++|+.+.+..+ +.......|..+++|+.+.+.+ .+.......+..+++|+.+.+..+ +.......+..+ +|+
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~ 106 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK 106 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence 445555555555442 4443444455555555555533 222222223344555555555433 222222334444 555
Q ss_pred EEEEcc
Q 005181 627 ELEIGP 632 (710)
Q Consensus 627 ~L~l~~ 632 (710)
.+.+..
T Consensus 107 ~i~~~~ 112 (129)
T PF13306_consen 107 EINIPS 112 (129)
T ss_dssp EEE-TT
T ss_pred EEEECC
Confidence 555543
No 269
>PRK07261 topology modulation protein; Provisional
Probab=96.72 E-value=0.0028 Score=58.37 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|+|+|++|+||||||++++..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999765
No 270
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.72 E-value=0.0056 Score=55.90 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=27.3
Q ss_pred EEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC
Q 005181 41 VAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK 81 (710)
Q Consensus 41 i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (710)
+.|.|++|+|||++|.+++.. ....++|+.-....+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d 37 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFD 37 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCC
Confidence 679999999999999999764 223677776655543
No 271
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.71 E-value=0.008 Score=58.47 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCc------CcEEEEEeCCCCCHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHF------NCRAWITVGKEYKKN 83 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f------~~~~~v~~~~~~~~~ 83 (710)
...++.|+|++|+|||++|.+++... .... ..++|+......+..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~ 68 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPE 68 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHH
Confidence 35799999999999999999997662 2222 568899887665543
No 272
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.70 E-value=0.0091 Score=58.47 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCccccc----CcCcEEEEEeCCCCCHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKT----HFNCRAWITVGKEYKKN 83 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~----~f~~~~~v~~~~~~~~~ 83 (710)
...++.|+|++|+|||++|.+++....... ....++|++....++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~ 68 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPE 68 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHH
Confidence 457899999999999999999975421222 13578999887765543
No 273
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.70 E-value=0.001 Score=67.39 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=36.0
Q ss_pred CCCceeecccchhhc-----------cCCCeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 20 PHAGFSGKEDNNQLI-----------QSERSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 20 ~~~~~vGre~~~~~i-----------~~~~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
..++++|.++.++++ ....++++|+||+|+||||+|.++++..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999998887 2245889999999999999999998763
No 274
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=8.6e-05 Score=70.26 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=31.7
Q ss_pred ccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccc--cccccccCcEEEcc
Q 005181 430 MKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPV--EIRNLKKLRYLMVY 505 (710)
Q Consensus 430 L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~ 505 (710)
.+-|++-+|.+..+. ...+|+.|++|.|+-|.|+.+. .+..|++|++|+|..|.|..+.. -+.++++|+.|+|.
T Consensus 21 vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 334444444444332 1124444444444444444431 34444444444444444443332 13344444544444
No 275
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.69 E-value=0.013 Score=57.90 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=65.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEE---eCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWIT---VGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEME 112 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~---~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 112 (710)
+....++|.|+.|+||||+++.++... . ...+.+++. +...... .++................+..+-..
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~--~-~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~~ 181 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARIL--S-TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGCP 181 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCcc--C-CCCceEEECCEEeecchhH----HHHHHHhcccccccccccccccccch
Confidence 334789999999999999999999873 2 223444442 2111111 22322221111000000111111112
Q ss_pred HHHHHHHHhc-CCceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCchhhh
Q 005181 113 LITTLRDHLK-DKSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHMNVA 165 (710)
Q Consensus 113 ~~~~~~~~l~-~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~~~~ 165 (710)
....+...+. ..+=++++|.+...+.+..+...+. .|..+|+||-+..+.
T Consensus 182 k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 182 KAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 2333444444 4678999999977766666655553 466799999876554
No 276
>PHA00729 NTP-binding motif containing protein
Probab=96.68 E-value=0.0043 Score=58.75 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+...|+|+|++|+||||||.++++.
T Consensus 14 ~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 14 NNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 344567999999999999999999876
No 277
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.67 E-value=0.0083 Score=56.78 Aligned_cols=109 Identities=10% Similarity=0.168 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHH
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLR 118 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (710)
+.|.|.|+.|+||||++..++.. ........++. +..+... .... ...+.... . ...+.....+.++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~--~~~~-~~~~i~q~--~-----vg~~~~~~~~~i~ 68 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEF--VHES-KRSLINQR--E-----VGLDTLSFENALK 68 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccc--cccC-ccceeeec--c-----cCCCccCHHHHHH
Confidence 57899999999999999988776 33333333432 2222111 0000 00000000 0 0111123456677
Q ss_pred HHhcCCceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCchh
Q 005181 119 DHLKDKSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHMN 163 (710)
Q Consensus 119 ~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~~ 163 (710)
..++..+=++++|++.+.+.+....... ..|..++.|+-...
T Consensus 69 ~aLr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~ 110 (198)
T cd01131 69 AALRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNS 110 (198)
T ss_pred HHhcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCc
Confidence 7787777799999997766554444332 23444666665443
No 278
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0038 Score=69.44 Aligned_cols=113 Identities=16% Similarity=0.224 Sum_probs=65.3
Q ss_pred CCceeecccchhhc--------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHH
Q 005181 21 HAGFSGKEDNNQLI--------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLL 86 (710)
Q Consensus 21 ~~~~vGre~~~~~i--------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (710)
...++|.+..+..+ ....++..+.||.|||||-||+++++.. -+.=+..+-++.|.....
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L--fg~e~aliR~DMSEy~Ek---- 563 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL--FGDEQALIRIDMSEYMEK---- 563 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh--cCCCccceeechHHHHHH----
Confidence 56788988888776 3335788899999999999999998762 111134444443332111
Q ss_pred HHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCce-EEEEecCCCcc--hHHHHHHhcCC
Q 005181 87 RTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSY-MVVFDDVWKID--FWGDVEYALLD 148 (710)
Q Consensus 87 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-LlvlDdv~~~~--~~~~~~~~l~~ 148 (710)
..+.+-++.+.+.. +.+ + .-.+-+..++++| +++||+++... .+.-+++.+.+
T Consensus 564 HsVSrLIGaPPGYV------Gye--e-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 564 HSVSRLIGAPPGYV------GYE--E-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHhCCCCCCc------eec--c-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 11222222222221 111 1 2234455567776 78889998754 45555655544
No 279
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.61 E-value=0.017 Score=52.33 Aligned_cols=122 Identities=18% Similarity=0.098 Sum_probs=67.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEE---EEEeCCCCCHHHHHHHHHHHHhhhc-CCCCCccccc-----
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRA---WITVGKEYKKNDLLRTILKEFHRVA-NQPAPVEIHD----- 107 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~---~v~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~----- 107 (710)
..+.|-|++..|.||||.|...+-+. .++--.++ |+.-.....-...++.+ .+.... +....-...+
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra--~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRA--LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHH--HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 34788899999999999999988874 33333443 33322111222233222 111110 0100000001
Q ss_pred hhHHHHHHHHHHHhcCCc-eEEEEecCCCc-----chHHHHHHhcCCCCCCcEEEEEcCch
Q 005181 108 MEEMELITTLRDHLKDKS-YMVVFDDVWKI-----DFWGDVEYALLDSKKCGRIIVTTRHM 162 (710)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~-~LlvlDdv~~~-----~~~~~~~~~l~~~~~~~~ilvTtR~~ 162 (710)
....+..+..++.+...+ =++|||.+... -+.+++...+...+.+..+|+|-|+.
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 111233444455555444 59999998532 25567777777777788999999985
No 280
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.61 E-value=0.088 Score=54.41 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=37.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccc-cCcCcEEEEEeCCCCC----HHHHHHHHHHHHhh
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLK-THFNCRAWITVGKEYK----KNDLLRTILKEFHR 95 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~-~~f~~~~~v~~~~~~~----~~~~~~~i~~~l~~ 95 (710)
....+|+|.|+=|+|||++.+.+.+..... ..-..+++++...... ...++..+...+..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~ 82 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEK 82 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHHH
Confidence 567899999999999999999998774222 1112334444333222 33455555555553
No 281
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.60 E-value=0.016 Score=61.38 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=36.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHHHHHHHh
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRTILKEFH 94 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~ 94 (710)
..+.+|.++|+.|+||||.|..++.... .....+..++++... ...+.+..+...+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D~~R~aa~eQL~~la~~~g 150 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAADTYRPAAYDQLKQLAEKIG 150 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 3468999999999999999999997743 222345555554322 22334444444443
No 282
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.59 E-value=0.0036 Score=63.07 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=54.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
+..+++-|+|++|+||||||.+++.. ....-..++|++.....+.. .++.++.....-..... .+.++...
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p--~~~eq~l~ 123 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQP--DTGEQALE 123 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecC--CCHHHHHH
Confidence 34579999999999999999998776 33334567898776655542 33333321110000011 12344555
Q ss_pred HHHHHhcC-CceEEEEecCC
Q 005181 116 TLRDHLKD-KSYMVVFDDVW 134 (710)
Q Consensus 116 ~~~~~l~~-~~~LlvlDdv~ 134 (710)
.+....+. ..-++|+|.+.
T Consensus 124 ~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 124 IAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHHhhccCCcEEEEcchh
Confidence 55555543 45688999975
No 283
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.58 E-value=0.0014 Score=57.28 Aligned_cols=105 Identities=8% Similarity=0.007 Sum_probs=60.1
Q ss_pred cccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCc
Q 005181 546 WIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDI 625 (710)
Q Consensus 546 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L 625 (710)
.|.++++|+.+.+.. .+.......|..+++|+.+.+.++ +.......+..+++|+.+.+.+ .........+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 467788888888864 566666778888888999998765 5555555677888899999865 3333333456678899
Q ss_pred cEEEEccCCCCCCCccccccCCCCcEEEEe
Q 005181 626 RELEIGPCPLLMEIPIGIEHLRNLKLLRFD 655 (710)
Q Consensus 626 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 655 (710)
+.+.+..+ +...-...+.++ +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 99998765 332233456666 88888875
No 284
>PRK10867 signal recognition particle protein; Provisional
Probab=96.58 E-value=0.013 Score=61.83 Aligned_cols=41 Identities=29% Similarity=0.324 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccC-cCcEEEEEeCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTH-FNCRAWITVGK 78 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~-f~~~~~v~~~~ 78 (710)
..+.+|.++|+.|+||||.+..++... ... ...+..++++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l--~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYL--KKKKKKKVLLVAADV 139 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH--HHhcCCcEEEEEccc
Confidence 346899999999999999998888763 222 23455565543
No 285
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.55 E-value=0.036 Score=53.10 Aligned_cols=221 Identities=14% Similarity=0.176 Sum_probs=116.8
Q ss_pred eeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcc----cccCcCcEEEEEeCCC---------------
Q 005181 24 FSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEG----LKTHFNCRAWITVGKE--------------- 79 (710)
Q Consensus 24 ~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~----~~~~f~~~~~v~~~~~--------------- 79 (710)
..++++..+.+ .+......++||+|.||-|.+..+.++.- .+-+-+..-|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 45555555555 45568889999999999998877655410 0000111222221111
Q ss_pred ------CCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCce-EEEEecCCCcc--hHHHHHHhcCCCC
Q 005181 80 ------YKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSY-MVVFDDVWKID--FWGDVEYALLDSK 150 (710)
Q Consensus 80 ------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-LlvlDdv~~~~--~~~~~~~~l~~~~ 150 (710)
...+.++.++++++..... + +...++.| ++|+..+++.. .-..+..-.-...
T Consensus 95 tPSDaG~~DRvViQellKevAQt~q------------------i-e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQ------------------I-ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcc------------------h-hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1122344444444432210 0 01112344 56667776653 2223333344445
Q ss_pred CCcEEEE----EcCch-hhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchH
Q 005181 151 KCGRIIV----TTRHM-NVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLA 225 (710)
Q Consensus 151 ~~~~ilv----TtR~~-~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 225 (710)
..||+|+ |||-- .+...| -.++++..+++|....+...+..+. -.. -.+.+.+|++.++|+---
T Consensus 156 ~~~RlIl~cns~SriIepIrSRC------l~iRvpaps~eeI~~vl~~v~~kE~--l~l---p~~~l~rIa~kS~~nLRr 224 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRC------LFIRVPAPSDEEITSVLSKVLKKEG--LQL---PKELLKRIAEKSNRNLRR 224 (351)
T ss_pred cCceEEEEecCcccchhHHhhhe------eEEeCCCCCHHHHHHHHHHHHHHhc--ccC---cHHHHHHHHHHhcccHHH
Confidence 6677776 33321 121112 5789999999999999998875432 111 257899999999988422
Q ss_pred HHHHHhhhc--C-------CCCCHHHHHHHHHhhccccCCCcchhhHHHHHHhcccCC
Q 005181 226 IVAVGGLLS--T-------KNMVVSEWKKLFDRMGSILGSDPHLKDCNRVLSEGYHDL 274 (710)
Q Consensus 226 l~~~~~~l~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L 274 (710)
.-++-...+ . .....-+|+-.+.+.....-.+..+..+..+-..=|+-|
T Consensus 225 AllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 225 ALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 112211111 1 122445799888887666554444455555544444443
No 286
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.55 E-value=0.016 Score=61.07 Aligned_cols=42 Identities=26% Similarity=0.223 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
..+.++.++|+.|+||||.|..++.....+. ...+..+++..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~D~ 138 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVACDL 138 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEeccc
Confidence 3467999999999999999999887632112 22455565543
No 287
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.018 Score=59.90 Aligned_cols=24 Identities=46% Similarity=0.547 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+++|.|++|+||||++.+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999875
No 288
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.54 E-value=0.00014 Score=79.96 Aligned_cols=110 Identities=18% Similarity=0.114 Sum_probs=67.7
Q ss_pred CCceeEEEeecCCCCCcchhhhhhcccccccEEecCCC-C-CccC----cccccCcccceEEEecccc-cccc-Ccch-h
Q 005181 401 DSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDA-P-VDYL----PEGVGNLFNLHYLSVKNTE-VKII-PKSI-R 471 (710)
Q Consensus 401 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~-~~~l----~~~~~~l~~L~~L~l~~n~-i~~l-p~~~-~ 471 (710)
++.++.+.+.++..+...........+++|+.|+++++ . +... ......+.+|+.|+++++. ++.. -..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 67777777777777655556667778888888888873 1 1111 1233456778888888776 4411 1122 2
Q ss_pred cccCCCEEEcCCCc-cc--cccccccccccCcEEEccccccc
Q 005181 472 NLLSLEILDLKNTL-VS--ELPVEIRNLKKLRYLMVYRYNYT 510 (710)
Q Consensus 472 ~l~~L~~L~l~~n~-~~--~~~~~~~~l~~L~~L~l~~~n~~ 510 (710)
.+++|++|.+.++. ++ .+-.....+++|++|+++++..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 36778888866554 32 22333456777888888766555
No 289
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.05 Score=51.12 Aligned_cols=130 Identities=13% Similarity=0.168 Sum_probs=74.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
-.+++-+.++||+|.|||-||+++|++ ....|+.++.. ++....-..+ .
T Consensus 178 IaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs--------elvqk~igeg----------------s 226 (404)
T KOG0728|consen 178 IAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS--------ELVQKYIGEG----------------S 226 (404)
T ss_pred CCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH--------HHHHHHhhhh----------------H
Confidence 445688899999999999999999887 34556776653 2222222111 2
Q ss_pred HHHHHHh----cCCceEEEEecCCCcc----------------hHHHHHHhcCCC--CCCcEEEEEcCchhhhhh--ccC
Q 005181 115 TTLRDHL----KDKSYMVVFDDVWKID----------------FWGDVEYALLDS--KKCGRIIVTTRHMNVAKY--CKS 170 (710)
Q Consensus 115 ~~~~~~l----~~~~~LlvlDdv~~~~----------------~~~~~~~~l~~~--~~~~~ilvTtR~~~~~~~--~~~ 170 (710)
..+++.+ .--+-+++.|.+++.. .+-.+...+.-+ ...-++|..|..-++..- .+.
T Consensus 227 rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrp 306 (404)
T KOG0728|consen 227 RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRP 306 (404)
T ss_pred HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCC
Confidence 2222222 2246788889987641 111222333322 233377776655444332 233
Q ss_pred CCCcceEEccCCCchhHHHHHHHHH
Q 005181 171 SSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 171 ~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
....+-++.++-+++.-.+++.-+.
T Consensus 307 gridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 307 GRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred CcccccccCCCCCHHHHHHHHHHhh
Confidence 3334567788888777777776664
No 290
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.50 E-value=0.0088 Score=55.51 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEE
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWIT 75 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~ 75 (710)
...+|++.|++|+||||+|+.+++. ....+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 4568999999999999999999887 444555666653
No 291
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.48 E-value=0.0084 Score=60.13 Aligned_cols=42 Identities=33% Similarity=0.347 Sum_probs=30.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
..++++|+|++|+||||++..++.....+..-..+.+++...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 467999999999999999999987742221113566677654
No 292
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.48 E-value=0.0051 Score=56.36 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccc-cCcCcEEEEEeCCCCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLK-THFNCRAWITVGKEYK 81 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~-~~f~~~~~v~~~~~~~ 81 (710)
..++.+.||+|+|||.+|+++++. .. +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccc
Confidence 467899999999999999999887 33 4445566666655433
No 293
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.027 Score=59.09 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..++++++|+.|+||||++..++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988764
No 294
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.45 E-value=0.0048 Score=62.19 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=53.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
..+++-|+|++|+||||||.+++.. .......++|++.....+.. .++.++.....-.... ..+.++....
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~--p~~~eq~l~i 124 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQ--PDTGEQALEI 124 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecC--CCCHHHHHHH
Confidence 3578899999999999999998876 33344578899877765542 2333322111000001 1123445555
Q ss_pred HHHHhcC-CceEEEEecCC
Q 005181 117 LRDHLKD-KSYMVVFDDVW 134 (710)
Q Consensus 117 ~~~~l~~-~~~LlvlDdv~ 134 (710)
+...++. .--++|+|.+.
T Consensus 125 ~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHhccCCCEEEEcchH
Confidence 5555543 45688889874
No 295
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.45 E-value=0.0031 Score=57.78 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=45.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccch-hHHHHHHHHH
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDM-EEMELITTLR 118 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~ 118 (710)
.+.|.|++|+||||+|.+++... . ..++|+.-... ...+....+....... +..+... .+.++...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~---~~~~~iat~~~-~~~e~~~ri~~h~~~R-----~~~w~t~E~~~~l~~~i~ 71 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--G---LQVLYIATAQP-FDDEMAARIAHHRQRR-----PAHWQTVEEPLDLAELLR 71 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--C---CCcEeCcCCCC-ChHHHHHHHHHHHhcC-----CCCCeEecccccHHHHHH
Confidence 68899999999999999997652 1 13455544332 3334444444443322 1122221 1123444454
Q ss_pred HHhcCCceEEEEecC
Q 005181 119 DHLKDKSYMVVFDDV 133 (710)
Q Consensus 119 ~~l~~~~~LlvlDdv 133 (710)
....+ .-++++|.+
T Consensus 72 ~~~~~-~~~VlID~L 85 (170)
T PRK05800 72 ADAAP-GRCVLVDCL 85 (170)
T ss_pred hhcCC-CCEEEehhH
Confidence 43333 336888886
No 296
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.45 E-value=0.04 Score=55.26 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=44.2
Q ss_pred CCceeecccchhhccCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLIQSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKE 92 (710)
Q Consensus 21 ~~~~vGre~~~~~i~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (710)
+..|-|-++.+.-+ ....++.|.|++|+||||++.+++.... ..+-..++|++...+ ..++...+...
T Consensus 14 ~tg~~~Ld~~~gG~-~~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 14 WWPFPVLNKLTKGL-RKGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCCcceeeeeeEEE-cCCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 45555555555333 3345888999999999999999987732 222456888887653 44455554443
No 297
>PRK09354 recA recombinase A; Provisional
Probab=96.44 E-value=0.0054 Score=62.34 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=54.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
..+++-|+|++|+||||||.+++.. ....-..++|++.....+.. .++.++.....-....+ .+.++....
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp--~~~Eq~l~i 129 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQP--DTGEQALEI 129 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecC--CCHHHHHHH
Confidence 3578899999999999999998876 33444678899887776642 33443322110000011 123445555
Q ss_pred HHHHhcC-CceEEEEecCC
Q 005181 117 LRDHLKD-KSYMVVFDDVW 134 (710)
Q Consensus 117 ~~~~l~~-~~~LlvlDdv~ 134 (710)
+...++. .--++|+|.+.
T Consensus 130 ~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHhhcCCCCEEEEeChh
Confidence 5555543 45689999975
No 298
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.42 E-value=0.0074 Score=68.48 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=32.6
Q ss_pred CCceeecccchhhc------------c-C-CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 21 HAGFSGKEDNNQLI------------Q-S-ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 21 ~~~~vGre~~~~~i------------~-~-~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...++|.+..++.+ . . ....+.++||+|+|||++|++++..
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 45688888887766 1 1 1357899999999999999999887
No 299
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.41 E-value=0.021 Score=60.58 Aligned_cols=41 Identities=37% Similarity=0.357 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
.++++++|++|+||||++..++...........+.+++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 46999999999999999998877632122334567777654
No 300
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.38 E-value=0.027 Score=51.86 Aligned_cols=123 Identities=18% Similarity=0.025 Sum_probs=68.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh---hhc-CCCCCc--cccch--
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH---RVA-NQPAPV--EIHDM-- 108 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~---~~~-~~~~~~--~~~~~-- 108 (710)
..+.|.|+|..|-||||.|...+-+. .++-..|..+-+..... ..-....++.+. ... +....- .....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra--~g~G~~V~ivQFlKg~~-~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA--VGHGKKVGVVQFIKGAW-STGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH--HHCCCeEEEEEEecCCC-ccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 45799999999999999999888773 33333444444333220 011122222221 000 000000 00111
Q ss_pred -hHHHHHHHHHHHhcC-CceEEEEecCCCc-----chHHHHHHhcCCCCCCcEEEEEcCch
Q 005181 109 -EEMELITTLRDHLKD-KSYMVVFDDVWKI-----DFWGDVEYALLDSKKCGRIIVTTRHM 162 (710)
Q Consensus 109 -~~~~~~~~~~~~l~~-~~~LlvlDdv~~~-----~~~~~~~~~l~~~~~~~~ilvTtR~~ 162 (710)
......+..++.+.. +-=++|||.+... -+.+++...+...+.+..||+|-|+.
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 112334444555554 4459999998542 25667777777777788999999985
No 301
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.37 E-value=0.014 Score=58.01 Aligned_cols=95 Identities=16% Similarity=0.138 Sum_probs=51.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchhH-HHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDMEE-MEL 113 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~ 113 (710)
.+.++++++|++|+||||.+..++... ......+..++++.... ..+.+....+........ .....+. ...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~----~~~~~dp~~~~ 143 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIK----QKEGADPAAVA 143 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEe----CCCCCCHHHHH
Confidence 346899999999999999999998763 33334566666553222 223344444444322110 0011122 222
Q ss_pred HHHHHHHhcCCceEEEEecCCCc
Q 005181 114 ITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 114 ~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
.+.+.....+..=++++|-.-..
T Consensus 144 ~~~l~~~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 144 FDAIQKAKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCC
Confidence 34444444344457888887543
No 302
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.37 E-value=0.034 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFN 60 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~ 60 (710)
-....+++|.|+.|+|||||.+.+..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 44567899999999999999998863
No 303
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00022 Score=67.56 Aligned_cols=99 Identities=19% Similarity=0.200 Sum_probs=76.1
Q ss_pred CCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcc--hhcccCCCE
Q 005181 401 DSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKS--IRNLLSLEI 478 (710)
Q Consensus 401 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~--~~~l~~L~~ 478 (710)
...++.|+.++|... ++ ....+|+.|++|.|+-|.|+++. .+..|++|+.|.|..|.|..+.+- +.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~--DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD--DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc--HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 346677888887762 22 45678999999999999999883 477899999999999999976554 789999999
Q ss_pred EEcCCCc-cccccc-----cccccccCcEEEc
Q 005181 479 LDLKNTL-VSELPV-----EIRNLKKLRYLMV 504 (710)
Q Consensus 479 L~l~~n~-~~~~~~-----~~~~l~~L~~L~l 504 (710)
|.|..|. .+.-+. .+.-|++|+.|+-
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 9998664 333332 3567888888753
No 304
>PRK06696 uridine kinase; Validated
Probab=96.36 E-value=0.0026 Score=61.56 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.++..+|+|.|++|+||||+|+++++.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 455789999999999999999999887
No 305
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.33 E-value=0.006 Score=54.38 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+|.+.|++|+||||+|++++..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998754
No 306
>PTZ00494 tuzin-like protein; Provisional
Probab=96.32 E-value=0.31 Score=50.42 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=91.9
Q ss_pred CCCceeecccchhhc--------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHH
Q 005181 20 PHAGFSGKEDNNQLI--------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILK 91 (710)
Q Consensus 20 ~~~~~vGre~~~~~i--------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 91 (710)
.+..+|.|++|-..+ ..-++++++.|..|.||++|.+..... .--..+||.+....+ .++.+.+
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk-----E~~paV~VDVRg~ED---tLrsVVK 440 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV-----EGVALVHVDVGGTED---TLRSVVR 440 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH-----cCCCeEEEEecCCcc---hHHHHHH
Confidence 367799999987665 344699999999999999999998654 333568888876544 4777777
Q ss_pred HHhhhcCCCCCccccchhHHHHHHHHHH-------HhcCCceEEEEe--cCCCcc-hHHHHHHhcCCCCCCcEEEEEcCc
Q 005181 92 EFHRVANQPAPVEIHDMEEMELITTLRD-------HLKDKSYMVVFD--DVWKID-FWGDVEYALLDSKKCGRIIVTTRH 161 (710)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~LlvlD--dv~~~~-~~~~~~~~l~~~~~~~~ilvTtR~ 161 (710)
.++.+..+ -..++.+.+-+ ...++.-+||+- +..+.. .+.+.... ..-..-|+|++----
T Consensus 441 ALgV~nve---------~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaL-acDrRlCHvv~EVpl 510 (664)
T PTZ00494 441 ALGVSNVE---------VCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSL-VSDCQACHIVLAVPM 510 (664)
T ss_pred HhCCCChh---------hhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHH-HccchhheeeeechH
Confidence 77654311 11123333322 234555555553 333322 23332222 222234566653222
Q ss_pred hhhhhhccCCCCcceEEccCCCchhHHHHHHHHH
Q 005181 162 MNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 162 ~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
+.+.........-..|-+++|+.++|.+.-.+..
T Consensus 511 ESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 511 KALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 2111111111222578999999999998877664
No 307
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.29 E-value=0.01 Score=56.06 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=44.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcC---cEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFN---CRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~---~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
+|+|.|++|+||||+|++++..... .... .+..+.............. ... .............+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~---~~~~~~~~~p~a~d~~~l~~~ 75 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGR---GENRYNFDHPDAFDFDLLKED 75 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHH---CTTTSSTTSGGGBSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhc---cccccCCCCccccCHHHHHHH
Confidence 6899999999999999999876321 2222 2444444333221111111 111 111111122344566667777
Q ss_pred HHHHhcCCceEE
Q 005181 117 LRDHLKDKSYMV 128 (710)
Q Consensus 117 ~~~~l~~~~~Ll 128 (710)
+.....++.+-+
T Consensus 76 l~~L~~g~~i~~ 87 (194)
T PF00485_consen 76 LKALKNGGSIEI 87 (194)
T ss_dssp HHHHHTTSCEEE
T ss_pred HHHHhCCCcccc
Confidence 776666666544
No 308
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.034 Score=57.94 Aligned_cols=91 Identities=19% Similarity=0.143 Sum_probs=51.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccc--cCcCcEEEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchhHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLK--THFNCRAWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDMEEMEL 113 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~--~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 113 (710)
..++|+++|+.|+||||.+..++...... .+-..+..++++.... ..+.+..+.+.++.+. ....+..++
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv-------~~~~~~~~l 245 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV-------KAIESFKDL 245 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce-------EeeCcHHHH
Confidence 46799999999999999999998763222 2234566666654322 2223333333332221 111123344
Q ss_pred HHHHHHHhcCCceEEEEecCCCc
Q 005181 114 ITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 114 ~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
...+... +..-++++|-+...
T Consensus 246 ~~~L~~~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 246 KEEITQS--KDFDLVLVDTIGKS 266 (388)
T ss_pred HHHHHHh--CCCCEEEEcCCCCC
Confidence 4444433 34568889998543
No 309
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.29 E-value=0.03 Score=52.00 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-....+++|.|+.|+|||||++.++..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 445678999999999999999999886
No 310
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.26 E-value=0.0046 Score=54.76 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=26.5
Q ss_pred eecccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 25 SGKEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 25 vGre~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
||+...++++ .....-|.|+|..|+||+++|+.+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 3444444444 556677899999999999999988765
No 311
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.26 E-value=0.018 Score=56.82 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCc
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
.|.++|++|+||||+|+++++..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998763
No 312
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.24 E-value=0.011 Score=56.29 Aligned_cols=92 Identities=15% Similarity=0.290 Sum_probs=51.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHHHHHHHhhhcCCCCCccccchhH------
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRTILKEFHRVANQPAPVEIHDMEE------ 110 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~------ 110 (710)
-..++|.|++|+|||+|+.++++.. .-+.++++.+.... ...++.+++...-.. .+-.......+...
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~-~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGAL-ERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGG-GGEEEEEEETTS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccc-cccccccccchhhHHHHhhh
Confidence 3567899999999999999998773 23455888776553 233333333221000 00000001111111
Q ss_pred ----HHHHHHHHHHhcCCceEEEEecCCCc
Q 005181 111 ----MELITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 111 ----~~~~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
...+++++. +++++|+++||+...
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHHHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhHHH
Confidence 134444554 689999999998443
No 313
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.23 E-value=0.014 Score=55.16 Aligned_cols=103 Identities=14% Similarity=0.088 Sum_probs=52.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
..+.++++|.|++|.||||+++.+.+.. ...-..++++.-. . .....+....+... .+ +.
T Consensus 15 ~~~~~~~~l~G~aGtGKT~~l~~~~~~~--~~~g~~v~~~apT-~----~Aa~~L~~~~~~~a----------~T---i~ 74 (196)
T PF13604_consen 15 TSGDRVSVLQGPAGTGKTTLLKALAEAL--EAAGKRVIGLAPT-N----KAAKELREKTGIEA----------QT---IH 74 (196)
T ss_dssp HCTCSEEEEEESTTSTHHHHHHHHHHHH--HHTT--EEEEESS-H----HHHHHHHHHHTS-E----------EE---HH
T ss_pred hcCCeEEEEEECCCCCHHHHHHHHHHHH--HhCCCeEEEECCc-H----HHHHHHHHhhCcch----------hh---HH
Confidence 5566889999999999999999987663 3332344443321 1 22222333322110 01 11
Q ss_pred HHHHHHh---------cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEc
Q 005181 115 TTLRDHL---------KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTT 159 (710)
Q Consensus 115 ~~~~~~l---------~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTt 159 (710)
..+...- ..+.-++|+|++.-.+ .+..+...... .++++|+.-
T Consensus 75 ~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 75 SFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp HHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred HHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 1111000 1234599999997665 55566655555 466777654
No 314
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.016 Score=51.60 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=39.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHH
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRD 119 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (710)
.|+|+|.+|+||||++..+... .+.+ +. +.+++.+-+.-...+........|.+.+...+..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~l-----g~~~-i~------------l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~ 63 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLREL-----GYKV-IE------------LNELAKENGLYTEYDELRKSVIVDVDKLRKRLEE 63 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHHh-----CCce-ee------------HHHHHHhcCCeeccCCccceEEeeHHHHHHHHHH
Confidence 5899999999999999998622 2222 11 2344444444333333333445566677777777
Q ss_pred Hhc
Q 005181 120 HLK 122 (710)
Q Consensus 120 ~l~ 122 (710)
.+.
T Consensus 64 ~~~ 66 (180)
T COG1936 64 LLR 66 (180)
T ss_pred Hhc
Confidence 663
No 315
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.036 Score=59.63 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=90.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
....+.+.++||+|.|||-++++++++. . ..++.+.. .++...+... +...+.
T Consensus 215 ~~~prg~Ll~gppg~Gkt~l~~aVa~e~--~-----a~~~~i~~--------peli~k~~gE------------te~~LR 267 (693)
T KOG0730|consen 215 IKPPRGLLLYGPPGTGKTFLVRAVANEY--G-----AFLFLING--------PELISKFPGE------------TESNLR 267 (693)
T ss_pred CCCCCCccccCCCCCChHHHHHHHHHHh--C-----ceeEeccc--------HHHHHhcccc------------hHHHHH
Confidence 3346788999999999999999999872 2 11112211 1222222222 222556
Q ss_pred HHHHHHhcCC-ceEEEEecCCCcc------------hHHHHHHhcCCCCCCcEEEE--EcCchhhhhh-ccCCCCcceEE
Q 005181 115 TTLRDHLKDK-SYMVVFDDVWKID------------FWGDVEYALLDSKKCGRIIV--TTRHMNVAKY-CKSSSSVHVHE 178 (710)
Q Consensus 115 ~~~~~~l~~~-~~LlvlDdv~~~~------------~~~~~~~~l~~~~~~~~ilv--TtR~~~~~~~-~~~~~~~~~~~ 178 (710)
..+.+..+.+ +.++.+|+++..- ...++...+...++.+++|| +|+.++-..- .+.....+.++
T Consensus 268 ~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~ 347 (693)
T KOG0730|consen 268 KAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVE 347 (693)
T ss_pred HHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceee
Confidence 6677777777 8999999986532 12233334433343343433 6665543222 22123446788
Q ss_pred ccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 179 LETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 179 l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
++..+..+-.++++....... .. .......++..+.|+-
T Consensus 348 IgiP~~~~RldIl~~l~k~~~--~~----~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 348 IGIPGSDGRLDILRVLTKKMN--LL----SDVDLEDIAVSTHGYV 386 (693)
T ss_pred ecCCCchhHHHHHHHHHHhcC--Cc----chhhHHHHHHHccchh
Confidence 888888888888887764331 11 2245666777777764
No 316
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.20 E-value=0.0024 Score=63.39 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=22.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-...+-+.++|++|+|||++++.+...
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHcCCcEEEECCCCCchhHHHHhhhcc
Confidence 344667789999999999999998765
No 317
>PRK05973 replicative DNA helicase; Provisional
Probab=96.19 E-value=0.02 Score=55.18 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
.....+.|.|.+|+|||++|.+++... -.....++|++....
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes 103 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC
Confidence 335688899999999999999998773 223456788877654
No 318
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.043 Score=59.55 Aligned_cols=173 Identities=13% Similarity=0.129 Sum_probs=94.5
Q ss_pred CCCceeecccchhhc-----------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCH
Q 005181 20 PHAGFSGKEDNNQLI-----------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKK 82 (710)
Q Consensus 20 ~~~~~vGre~~~~~i-----------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (710)
.-.+.-|.|+..+++ ..-++-|.++||+|.|||.||++++.... - =|+..+..
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~--V-----PFf~iSGS--- 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--V-----PFFSISGS--- 217 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC--C-----Cceeccch---
Confidence 345677877776655 12257789999999999999999998842 2 22222222
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCc------------chHHH----HHHhc
Q 005181 83 NDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKI------------DFWGD----VEYAL 146 (710)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~------------~~~~~----~~~~l 146 (710)
+.++.+.. .+ ..-+.+.+.+..+.-++++++|.++.. +..++ ++.-.
T Consensus 218 -----~FVemfVG-----vG-------AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEm 280 (596)
T COG0465 218 -----DFVEMFVG-----VG-------ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM 280 (596)
T ss_pred -----hhhhhhcC-----CC-------cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhh
Confidence 11111111 00 012344455555666899999998642 12333 33223
Q ss_pred CCCCCCc-EEEE--EcCchhh-hhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC
Q 005181 147 LDSKKCG-RIIV--TTRHMNV-AKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL 222 (710)
Q Consensus 147 ~~~~~~~-~ilv--TtR~~~~-~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 222 (710)
.-+..+. -|++ |.|..-+ ....+.....+.+.++-.+...-.+++.-++.... ...... ...|++.+-|+
T Consensus 281 DGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~--l~~~Vd----l~~iAr~tpGf 354 (596)
T COG0465 281 DGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP--LAEDVD----LKKIARGTPGF 354 (596)
T ss_pred ccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC--CCCcCC----HHHHhhhCCCc
Confidence 3333222 2333 5555333 23345555556777877777777888887764432 111111 22277777776
Q ss_pred chH
Q 005181 223 PLA 225 (710)
Q Consensus 223 Pla 225 (710)
--|
T Consensus 355 sGA 357 (596)
T COG0465 355 SGA 357 (596)
T ss_pred ccc
Confidence 533
No 319
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.019 Score=58.70 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=52.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
.+.++++|+|+.|+||||++..++... ...-..+.+++++.... ..+.+....+.+..+. ....+..++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv-------~~~~dp~dL~ 274 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL-------IVATSPAELE 274 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-------EecCCHHHHH
Confidence 346899999999999999999998763 22224567777655433 2333444444332211 1112444555
Q ss_pred HHHHHHhc-CCceEEEEecCCC
Q 005181 115 TTLRDHLK-DKSYMVVFDDVWK 135 (710)
Q Consensus 115 ~~~~~~l~-~~~~LlvlDdv~~ 135 (710)
..+...-. +..=++++|-+-.
T Consensus 275 ~al~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 275 EAVQYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHHHHHhcCCCCEEEEECCCC
Confidence 54543321 3345778888754
No 320
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.15 E-value=0.034 Score=51.93 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+|.|.|++|+||||+|+++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999776
No 321
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.14 E-value=0.024 Score=55.42 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=36.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRT 88 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 88 (710)
-+...++.|.|++|+|||++|.+++... -.....++|++... +..++.+.
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~--~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEEEeeC--CHHHHHHH
Confidence 3346899999999999999999987662 23345788988765 44444444
No 322
>PRK15453 phosphoribulokinase; Provisional
Probab=96.12 E-value=0.028 Score=55.04 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.++.+|+|.|.+|+||||+|+++++.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~i 28 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKI 28 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999865
No 323
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.08 E-value=0.0048 Score=60.00 Aligned_cols=94 Identities=22% Similarity=0.255 Sum_probs=52.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccC-cCcEEEEEeCCCCCHHHHHHHHHHHHhhhc-------C---CCCCcc
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTH-FNCRAWITVGKEYKKNDLLRTILKEFHRVA-------N---QPAPVE 104 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-------~---~~~~~~ 104 (710)
+...++.|.|++|+|||++|.+++... ... -..++|++...+. +++.+.+. .++-.. . ......
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~--~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNG--LKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH--HHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHh--hhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 346799999999999999999988762 233 4578898876543 33333322 222100 0 000000
Q ss_pred cc---chhHHHHHHHHHHHhcC-CceEEEEecCC
Q 005181 105 IH---DMEEMELITTLRDHLKD-KSYMVVFDDVW 134 (710)
Q Consensus 105 ~~---~~~~~~~~~~~~~~l~~-~~~LlvlDdv~ 134 (710)
.. ..+.+++...+.+.++. +.-.+|+|.+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 00 23445666666665554 34678888863
No 324
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.07 E-value=0.11 Score=49.37 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCceEEEEecCC-Cc--chHHHHHHhcCCC--CCCcEEEEEcCchhhhhhcc
Q 005181 114 ITTLRDHLKDKSYMVVFDDVW-KI--DFWGDVEYALLDS--KKCGRIIVTTRHMNVAKYCK 169 (710)
Q Consensus 114 ~~~~~~~l~~~~~LlvlDdv~-~~--~~~~~~~~~l~~~--~~~~~ilvTtR~~~~~~~~~ 169 (710)
.-.+-..+-..+-+++.|+-- .. +.-..+...+... ..|..||+.|-++.++..+.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 334555666677788888741 11 1223334344332 34668999999999988764
No 325
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.07 E-value=0.036 Score=54.62 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=38.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKND 84 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (710)
-+..+++=|+|+.|.||||+|.+++-. .......++|++..+..+++.
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r 104 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPER 104 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHH
Confidence 455688999999999999999998776 444555889999888877654
No 326
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.0061 Score=52.41 Aligned_cols=73 Identities=22% Similarity=0.379 Sum_probs=44.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
...|.|+|-+|+||||+|.++++. .+.-|+++++-..-..+....-++. .-...|.+.+.+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~-------~~~~~i~isd~vkEn~l~~gyDE~y----------~c~i~DEdkv~D~L 69 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK-------TGLEYIEISDLVKENNLYEGYDEEY----------KCHILDEDKVLDEL 69 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH-------hCCceEehhhHHhhhcchhcccccc----------cCccccHHHHHHHH
Confidence 346789999999999999999865 1345677665433323332222222 22234556777777
Q ss_pred HHHhcCCceE
Q 005181 118 RDHLKDKSYM 127 (710)
Q Consensus 118 ~~~l~~~~~L 127 (710)
...+.+...+
T Consensus 70 e~~m~~Gg~I 79 (176)
T KOG3347|consen 70 EPLMIEGGNI 79 (176)
T ss_pred HHHHhcCCcE
Confidence 7776654443
No 327
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.06 E-value=0.0054 Score=54.60 Aligned_cols=36 Identities=25% Similarity=0.143 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEE
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWIT 75 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~ 75 (710)
..+|.|+|.+|+||||||+++.+. .......+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999887 444445666664
No 328
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.06 E-value=0.012 Score=58.31 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=32.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
+..+++.|.|++|+|||++|.+++... ...-..++|++...+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVESP 75 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecCC
Confidence 345789999999999999999987763 223457889988643
No 329
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.029 Score=56.13 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=81.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
...+-|.++||+|.|||-+|++++.+ ....|-+ |..+.-.+ + .++. ...+..
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Ake--aga~fIn---v~~s~lt~-K--------WfgE--------------~eKlv~ 176 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKE--AGANFIN---VSVSNLTS-K--------WFGE--------------AQKLVK 176 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHH--cCCCcce---eeccccch-h--------hHHH--------------HHHHHH
Confidence 34678899999999999999999888 4444432 22332211 1 1111 012222
Q ss_pred HHHHHhc-CCceEEEEecCCCcc---------hH----HHHHHhcC--CCCCCcEEEE---EcCchhhhhhccCCCCcce
Q 005181 116 TLRDHLK-DKSYMVVFDDVWKID---------FW----GDVEYALL--DSKKCGRIIV---TTRHMNVAKYCKSSSSVHV 176 (710)
Q Consensus 116 ~~~~~l~-~~~~LlvlDdv~~~~---------~~----~~~~~~l~--~~~~~~~ilv---TtR~~~~~~~~~~~~~~~~ 176 (710)
.+-..-. =++.++.+|.++..- .. .+++..+. ..+.+++|+| |-|..++-...-. ...+.
T Consensus 177 AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR-R~p~r 255 (386)
T KOG0737|consen 177 AVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR-RLPRR 255 (386)
T ss_pred HHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH-hCcce
Confidence 2222222 267788888886531 11 11222222 2345557888 6776554433221 12256
Q ss_pred EEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 177 HELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 177 ~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
+.|+--+.+.-.+++.-...... .. ..-...+|++.+.|+-
T Consensus 256 f~V~lP~~~qR~kILkviLk~e~--~e----~~vD~~~iA~~t~GyS 296 (386)
T KOG0737|consen 256 FHVGLPDAEQRRKILKVILKKEK--LE----DDVDLDEIAQMTEGYS 296 (386)
T ss_pred eeeCCCchhhHHHHHHHHhcccc--cC----cccCHHHHHHhcCCCc
Confidence 66666666666666666553321 11 1224677888888864
No 330
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.017 Score=61.67 Aligned_cols=43 Identities=28% Similarity=0.295 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
+..++++|+|++|+||||++.+++.....++....+.+++.+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt 390 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT 390 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3468999999999999999999887632222234566666543
No 331
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.051 Score=61.02 Aligned_cols=88 Identities=25% Similarity=0.224 Sum_probs=47.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
.++++++|+.|+||||.+.+++...........+..+..+... ...+.+....+.++.+.. ...+..++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~-------~~~~~~~l~~a 257 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH-------AVKDAADLRFA 257 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc-------ccCCHHHHHHH
Confidence 5799999999999999999998774222222355666544322 123444444444432211 11133344443
Q ss_pred HHHHhcCCceEEEEecCC
Q 005181 117 LRDHLKDKSYMVVFDDVW 134 (710)
Q Consensus 117 ~~~~l~~~~~LlvlDdv~ 134 (710)
+. .++++. ++++|=+-
T Consensus 258 l~-~~~~~D-~VLIDTAG 273 (767)
T PRK14723 258 LA-ALGDKH-LVLIDTVG 273 (767)
T ss_pred HH-HhcCCC-EEEEeCCC
Confidence 43 334443 66667664
No 332
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.05 E-value=0.0044 Score=54.06 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 005181 41 VAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 41 i~i~G~~GvGKTtla~~~~~~ 61 (710)
|+|.|++|+||||+|+++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999877
No 333
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.04 E-value=0.0037 Score=47.52 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+|+|.|++|+||||+++++.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 334
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.03 E-value=0.04 Score=53.21 Aligned_cols=129 Identities=15% Similarity=0.145 Sum_probs=71.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC-----CCCHHHHHHHHHHHHhhhc--CCCCCccccc
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK-----EYKKNDLLRTILKEFHRVA--NQPAPVEIHD 107 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~-----~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~ 107 (710)
-.+..+++|+|.+|+||||+++.+..- .+.. .+.+++.-.. .....+.+.++++.++... ....+....+
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L--~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGL--EEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcC--cCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 566789999999999999999999886 3323 3444443211 1123344566666655322 1122222222
Q ss_pred hhHHHHHHHHHHHhcCCceEEEEecCCCcchH---HHHHHhcCC--CCCCcEEEEEcCchhhhhhc
Q 005181 108 MEEMELITTLRDHLKDKSYMVVFDDVWKIDFW---GDVEYALLD--SKKCGRIIVTTRHMNVAKYC 168 (710)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~~~---~~~~~~l~~--~~~~~~ilvTtR~~~~~~~~ 168 (710)
-.. -.-.+...+.-++=++|.|..-+.-+. .++...+.+ ...|-.++..|-+-.+....
T Consensus 113 GQr--QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 113 GQR--QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhh--hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 111 122344566678889999997554322 233333322 22344577777776655544
No 335
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.0046 Score=54.08 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcc
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEG 63 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~ 63 (710)
.-.|+|.|++|+||||++..+++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 45689999999999999999998743
No 336
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.02 E-value=0.02 Score=59.41 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
..++.|.|++|+||||++.+++... ......++|++...
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EE 120 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEE 120 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCc
Confidence 5789999999999999999998763 23334688887643
No 337
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.01 E-value=0.042 Score=53.82 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=55.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCccc--ccCcCcEEEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchh--
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGL--KTHFNCRAWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDME-- 109 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~--~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~-- 109 (710)
-..-..++|.|.+|+|||+|+.+++++... +++-+.++|+-+.+... ..++.+++...=....- .......+..
T Consensus 66 ig~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~t-v~v~~t~~~~~~ 144 (276)
T cd01135 66 LVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERV-VLFLNLANDPTI 144 (276)
T ss_pred cccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceE-EEEEecCCCCHH
Confidence 334467799999999999999998876321 12235778888876643 33444444332110000 0000000101
Q ss_pred ----HHHHHHHHHHHhc---CCceEEEEecCCCcc
Q 005181 110 ----EMELITTLRDHLK---DKSYMVVFDDVWKID 137 (710)
Q Consensus 110 ----~~~~~~~~~~~l~---~~~~LlvlDdv~~~~ 137 (710)
....+-.+-|+++ ++++|+++||+-...
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A 179 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYA 179 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHH
Confidence 0112223444443 688999999986543
No 338
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.99 E-value=0.064 Score=65.06 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....+-|.++||+|.|||.||+++|.+
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHh
Confidence 344678889999999999999999987
No 339
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.97 E-value=0.06 Score=56.57 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVG 77 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (710)
....+|+++|+.|+||||.+.+++...+ .....+..++++
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~--~~G~kV~lV~~D 137 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQ--RKGFKPCLVCAD 137 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEcCc
Confidence 3468999999999999999999987632 222355556554
No 340
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.97 E-value=0.018 Score=56.81 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=37.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCccc----ccCcCcEEEEEeCCCCCHHHHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGL----KTHFNCRAWITVGKEYKKNDLLRTILKE 92 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~----~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (710)
..+.=|+|++|+|||+||.+++=.... .+.-..++|++-...+..+.+. +|+++
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~ 95 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAER 95 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhc
Confidence 468889999999999999888633111 1222469999988888776554 45554
No 341
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.96 E-value=0.027 Score=59.31 Aligned_cols=94 Identities=12% Similarity=0.194 Sum_probs=50.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhc-----CCCCCccccchhH-
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVA-----NQPAPVEIHDMEE- 110 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~- 110 (710)
.-..++|.|++|+|||||+..++.... ...+++++.-.+..+..++....+....... ....++. .....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~-~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPM-MRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHH-HHHHHH
Confidence 346789999999999999999877521 1224444432233444444444444331110 0000000 00001
Q ss_pred ---HHHHHHHHHHhcCCceEEEEecCCCc
Q 005181 111 ---MELITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 111 ---~~~~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
-.++++++. +++++|+++||+-..
T Consensus 240 ~~a~~iAEyfrd--~G~~Vll~~DslTr~ 266 (450)
T PRK06002 240 LTATAIAEYFRD--RGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHH--cCCCEEEeccchHHH
Confidence 123444443 478999999998554
No 342
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.95 E-value=0.032 Score=56.88 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHhhCCc
Q 005181 41 VAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 41 i~i~G~~GvGKTtla~~~~~~~ 62 (710)
+++.|++|+||||+++.+++..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998763
No 343
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.94 E-value=0.025 Score=57.34 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=38.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccc----cCcCcEEEEEeCCCCCHHHHHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLK----THFNCRAWITVGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (710)
.+++-|+|++|+|||+++.+++-..... +.-..++|++....++++.+. ++++.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~ 154 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERF 154 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHc
Confidence 4788899999999999999876431111 122478999988877766554 345554
No 344
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.94 E-value=0.064 Score=57.30 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
..++++++|+.|+||||.+.+++.....+.....+..+..+.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 347999999999999999999987632222222455565543
No 345
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.92 E-value=0.036 Score=56.81 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=38.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCccccc----CcCcEEEEEeCCCCCHHHHHHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKT----HFNCRAWITVGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (710)
...++-|+|++|+|||++|.+++....... .-..++|++....++...+. ++++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHc
Confidence 357888999999999999999986532211 11478999988876665543 334433
No 346
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.92 E-value=0.0089 Score=52.99 Aligned_cols=41 Identities=32% Similarity=0.405 Sum_probs=29.2
Q ss_pred EEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHH
Q 005181 41 VAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLL 86 (710)
Q Consensus 41 i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 86 (710)
|.|+|++|+|||++|+.+++. .. ..+..+.+....+..+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccce
Confidence 679999999999999999887 31 234456677666655444
No 347
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.92 E-value=0.025 Score=57.95 Aligned_cols=61 Identities=25% Similarity=0.202 Sum_probs=39.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC-HHHHHHHHHHHHhhhc
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK-KNDLLRTILKEFHRVA 97 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~ 97 (710)
..++|+++||.||||||-..++|.+......=..|..++.+...- ..+.++..++-+..+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce
Confidence 389999999999999876655555532223334567777655443 4455666666655543
No 348
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.91 E-value=0.0037 Score=65.88 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=35.8
Q ss_pred CCceeecccchhhc---cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 21 HAGFSGKEDNNQLI---QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 21 ~~~~vGre~~~~~i---~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...++||++.++.+ .-..+.|.|.|++|+|||++|+.++..
T Consensus 19 ~~~i~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHH
Confidence 56799999999988 555677889999999999999999876
No 349
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.90 E-value=0.026 Score=57.71 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=39.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCccc---ccC-cCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGL---KTH-FNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~---~~~-f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
..++.-|+|++|+|||+|+.+++-.... .+. -..++|++....+.++.+.+ +++.++
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 3477789999999999999998643111 111 24789999988877766544 455543
No 350
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.90 E-value=0.032 Score=58.41 Aligned_cols=95 Identities=15% Similarity=0.230 Sum_probs=51.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchhH---
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDMEE--- 110 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--- 110 (710)
-.....++|.|+.|+|||||+..++... ..+.+++.-+..... ..++.++++..-... .-.......+...
T Consensus 159 i~~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~-rtvvv~atsd~p~~~R 233 (444)
T PRK08972 159 VGKGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRA-RSVVVAAPADTSPLMR 233 (444)
T ss_pred EcCCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcc-cEEEEEECCCCCHHHH
Confidence 3445678999999999999999998752 124555565655432 233444433221100 0000001111111
Q ss_pred -------HHHHHHHHHHhcCCceEEEEecCCCc
Q 005181 111 -------MELITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 111 -------~~~~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
..++++++. +++++|+++||+-..
T Consensus 234 ~~a~~~A~tiAEyfrd--~G~~VLl~~DslTR~ 264 (444)
T PRK08972 234 LKGCETATTIAEYFRD--QGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHHHH--cCCCEEEEEcChHHH
Confidence 123444443 479999999999554
No 351
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.88 E-value=0.061 Score=56.92 Aligned_cols=100 Identities=14% Similarity=0.268 Sum_probs=54.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHH-HHhhCCccc-----ccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccch
Q 005181 35 QSERSVVAVVGEGGLGKTTVA-GKIFNSEGL-----KTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDM 108 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla-~~~~~~~~~-----~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 108 (710)
-..-..++|.|..|+|||+|| ..+++.... .++-..++|+-+.+......-+.+.+++-+....-.......+.
T Consensus 186 IGRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 186 IGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred ccCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCC
Confidence 334467789999999999997 555665311 12334678888877654433333333333211100000000111
Q ss_pred ----------hHHHHHHHHHHHhcCCceEEEEecCCCc
Q 005181 109 ----------EEMELITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 109 ----------~~~~~~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
.-..+++.++. +++.+|+|+||+-+.
T Consensus 266 p~~~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFMN--RGRHCLCVYDDLSKQ 301 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--cCCCEEEEEcCchHH
Confidence 11134444443 478999999999653
No 352
>PRK08233 hypothetical protein; Provisional
Probab=95.88 E-value=0.0064 Score=56.80 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+|+|.|++|+||||+|.+++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999876
No 353
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.87 E-value=0.078 Score=58.82 Aligned_cols=57 Identities=21% Similarity=0.196 Sum_probs=41.2
Q ss_pred CCceeecccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 21 HAGFSGKEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 21 ~~~~vGre~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
.+.++|....++.+ .....-|.|+|..|+|||++|+.+.+. ....-...+.++|...
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~--s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL--SPRAKRPFVKVNCAAL 258 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh--CCCCCCCeEEeecCCC
Confidence 46899998888776 444567889999999999999999775 2222224455666654
No 354
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.86 E-value=0.025 Score=58.57 Aligned_cols=94 Identities=13% Similarity=0.268 Sum_probs=54.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
....+.+.|.|+.|+||||++..+.+. ........++ .+.++... .... ...+.... . .+.+..+..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~-tiEdp~E~--~~~~-~~~~i~q~--e-----vg~~~~~~~ 185 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDY--INKNAAGHII-TIEDPIEY--VHRN-KRSLINQR--E-----VGLDTLSFA 185 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEE-EEcCChhh--hccC-ccceEEcc--c-----cCCCCcCHH
Confidence 445689999999999999999998876 3333344443 23333211 0000 00000000 0 011112456
Q ss_pred HHHHHHhcCCceEEEEecCCCcchHHH
Q 005181 115 TTLRDHLKDKSYMVVFDDVWKIDFWGD 141 (710)
Q Consensus 115 ~~~~~~l~~~~~LlvlDdv~~~~~~~~ 141 (710)
+.++..++..+=.+++|.+.+.+.+..
T Consensus 186 ~~l~~~lr~~pd~i~vgEird~~~~~~ 212 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMRDLETVEL 212 (343)
T ss_pred HHHHHhhccCCCEEEEeCCCCHHHHHH
Confidence 667888888889999999987665544
No 355
>PRK06762 hypothetical protein; Provisional
Probab=95.85 E-value=0.0059 Score=56.07 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+|+|+|++|+||||+|+++++.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 356
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.84 E-value=0.034 Score=56.58 Aligned_cols=40 Identities=28% Similarity=0.271 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVG 77 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (710)
.+..++++.|+.|+||||++..++.... ..-..+..+..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCeEEEEecC
Confidence 3568999999999999999999988742 332345555543
No 357
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.83 E-value=0.11 Score=46.53 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++.|+|++|+||||+|++++..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999999776
No 358
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.81 E-value=0.022 Score=62.00 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=33.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
-....++.|.|++|+|||||+.+++... ...-..++|+.....
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEES 302 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeCC
Confidence 4446899999999999999999999873 333456788876654
No 359
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.80 E-value=0.0078 Score=57.53 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+...+|+|.|++|+||||||+.++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999876
No 360
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.79 E-value=0.0049 Score=65.90 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=34.6
Q ss_pred ceeecccchhhc-----------cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 23 GFSGKEDNNQLI-----------QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 23 ~~vGre~~~~~i-----------~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+++|.++.+++| ....++++++||+|+||||||+.+++-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 688999999987 455689999999999999999999875
No 361
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.027 Score=63.78 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=61.5
Q ss_pred CCceeecccchhhc------------cC-CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHH
Q 005181 21 HAGFSGKEDNNQLI------------QS-ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLR 87 (710)
Q Consensus 21 ~~~~vGre~~~~~i------------~~-~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (710)
...++|.++.+..| ++ ..-...+.||.|+|||-||++++.. .-+..+..+-++.+.. .+
T Consensus 561 ~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse~------~e 632 (898)
T KOG1051|consen 561 HERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSEF------QE 632 (898)
T ss_pred HhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhhh------hh
Confidence 45677877777766 21 4568899999999999999999887 3333344455544432 11
Q ss_pred HHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCce-EEEEecCCCcc
Q 005181 88 TILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSY-MVVFDDVWKID 137 (710)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-LlvlDdv~~~~ 137 (710)
..+.++.+.+ ..+. +...++-+.++++++ +++||||+..+
T Consensus 633 -vskligsp~g------yvG~---e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 633 -VSKLIGSPPG------YVGK---EEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred -hhhccCCCcc------cccc---hhHHHHHHHHhcCCceEEEEechhhcC
Confidence 2222232221 1222 234467777778775 66679998765
No 362
>PRK04328 hypothetical protein; Provisional
Probab=95.78 E-value=0.047 Score=53.72 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=32.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
+...++.|.|++|+|||++|.+++... ......++|++....
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeCC
Confidence 346889999999999999999987762 233456889887664
No 363
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.77 E-value=0.076 Score=49.61 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHhh
Q 005181 40 VVAVVGEGGLGKTTVAGKIF 59 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~ 59 (710)
++.|+|+.|.||||+++.++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 46899999999999999987
No 364
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.77 E-value=0.033 Score=54.12 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=24.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
.+...+++|.|++|+|||||++.++...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998773
No 365
>PRK13695 putative NTPase; Provisional
Probab=95.76 E-value=0.03 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCc
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
.++|.|++|+||||++..+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987763
No 366
>PTZ00301 uridine kinase; Provisional
Probab=95.76 E-value=0.0072 Score=57.37 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+|+|.|++|+||||+|+++++.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 468999999999999999988765
No 367
>PRK07667 uridine kinase; Provisional
Probab=95.75 E-value=0.011 Score=55.74 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=29.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
.+...+|+|.|++|+||||+|..+++.. ......+..++...
T Consensus 14 ~~~~~iIgI~G~~gsGKStla~~L~~~l--~~~~~~~~~i~~Dd 55 (193)
T PRK07667 14 KENRFILGIDGLSRSGKTTFVANLKENM--KQEGIPFHIFHIDD 55 (193)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEEEcCc
Confidence 4556899999999999999999998863 22222344444443
No 368
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.037 Score=56.29 Aligned_cols=87 Identities=16% Similarity=0.217 Sum_probs=52.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
-.+|.|-|.+|+|||||..+++.+. .... .++||+-... .+.++--++++...... ..-....+.+++.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~l--A~~~-~vLYVsGEES---~~QiklRA~RL~~~~~~--l~l~aEt~~e~I~~~l 164 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARL--AKRG-KVLYVSGEES---LQQIKLRADRLGLPTNN--LYLLAETNLEDIIAEL 164 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHH--HhcC-cEEEEeCCcC---HHHHHHHHHHhCCCccc--eEEehhcCHHHHHHHH
Confidence 4788899999999999999998883 3333 7889865443 23334444455433211 1111112333344333
Q ss_pred HHHhcCCceEEEEecCCC
Q 005181 118 RDHLKDKSYMVVFDDVWK 135 (710)
Q Consensus 118 ~~~l~~~~~LlvlDdv~~ 135 (710)
.+ .++-++|+|.+..
T Consensus 165 ~~---~~p~lvVIDSIQT 179 (456)
T COG1066 165 EQ---EKPDLVVIDSIQT 179 (456)
T ss_pred Hh---cCCCEEEEeccce
Confidence 33 5778999999854
No 369
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.75 E-value=0.022 Score=56.31 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=46.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHH
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRD 119 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (710)
.|.|+|.+|+||||+|+++.... ...-..+.+++.. .+. +.... .. ...........+...+..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~--~~~~~~v~~i~~~------~~~------~~~~~-y~-~~~~Ek~~R~~l~s~v~r 66 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYL--EEKGKEVVIISDD------SLG------IDRND-YA-DSKKEKEARGSLKSAVER 66 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHH--HHTT--EEEE-TH------HHH-------TTSS-S---GGGHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH--HhcCCEEEEEccc------ccc------cchhh-hh-chhhhHHHHHHHHHHHHH
Confidence 58899999999999999998863 2222234444310 000 11110 00 001011111234444555
Q ss_pred HhcCCceEEEEecCCCcchHHHHHHhcC-CCCCCcEEEEEcCchhhh
Q 005181 120 HLKDKSYMVVFDDVWKIDFWGDVEYALL-DSKKCGRIIVTTRHMNVA 165 (710)
Q Consensus 120 ~l~~~~~LlvlDdv~~~~~~~~~~~~l~-~~~~~~~ilvTtR~~~~~ 165 (710)
.+ +++.++|+||......+..-...+. ..+.+..+|...-+.+.+
T Consensus 67 ~l-s~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~ 112 (270)
T PF08433_consen 67 AL-SKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETC 112 (270)
T ss_dssp HH-TT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHH
T ss_pred hh-ccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHH
Confidence 55 4457889999988775544333332 233344455444443333
No 370
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.75 E-value=0.095 Score=50.13 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFN 60 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~ 60 (710)
.+.++|+|+.|.||||+.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999863
No 371
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.07 Score=55.39 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+..+-+.+.||+|.|||.|++++|-.
T Consensus 183 r~p~rglLLfGPpgtGKtmL~~aiAsE 209 (428)
T KOG0740|consen 183 REPVRGLLLFGPPGTGKTMLAKAIATE 209 (428)
T ss_pred ccccchhheecCCCCchHHHHHHHHhh
Confidence 556678889999999999999999887
No 372
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.73 E-value=0.047 Score=53.47 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=50.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHH-HHhhCCcccccCcCcE-EEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchh--
Q 005181 35 QSERSVVAVVGEGGLGKTTVA-GKIFNSEGLKTHFNCR-AWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDME-- 109 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla-~~~~~~~~~~~~f~~~-~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~-- 109 (710)
-.+-..++|.|.+|+|||+|| ..+++. . +-+.+ +|+-+..... ..++.+++...-... +-.......+..
T Consensus 66 igrGQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~-~tvvv~~t~d~~~~ 140 (274)
T cd01132 66 IGRGQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAME-YTIVVAATASDPAP 140 (274)
T ss_pred cccCCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccc-eeEEEEeCCCCchh
Confidence 334467889999999999996 455544 1 22333 6666655533 334444443321100 000000001111
Q ss_pred --------HHHHHHHHHHHhcCCceEEEEecCCCcc
Q 005181 110 --------EMELITTLRDHLKDKSYMVVFDDVWKID 137 (710)
Q Consensus 110 --------~~~~~~~~~~~l~~~~~LlvlDdv~~~~ 137 (710)
-..++++++. +++.+|+++||+-...
T Consensus 141 ~r~~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A 174 (274)
T cd01132 141 LQYLAPYTGCAMGEYFMD--NGKHALIIYDDLSKQA 174 (274)
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCEEEEEcChHHHH
Confidence 1234445444 4789999999996553
No 373
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.73 E-value=0.14 Score=46.97 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-.....++|.|+.|.|||||++.++..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999886
No 374
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.72 E-value=0.018 Score=53.44 Aligned_cols=22 Identities=50% Similarity=0.681 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+|+|.|.+|+||||+|.+++..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999877
No 375
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.70 E-value=0.036 Score=58.81 Aligned_cols=100 Identities=13% Similarity=0.195 Sum_probs=55.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHHHHHHHhhhcCCCCCccccchhH---
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRTILKEFHRVANQPAPVEIHDMEE--- 110 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--- 110 (710)
-..-..++|.|.+|+|||||+.+++.... +.+-+.++|+-+.... ...++.+++...-....- .......+.+.
T Consensus 140 igkGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rs-vvv~atsd~~~~~R 217 (461)
T PRK12597 140 IAKGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKT-VMVYGQMNEPPGAR 217 (461)
T ss_pred cccCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCccee-EEEecCCCCCHHHH
Confidence 44456789999999999999999887742 2244677777665443 233444444332110000 00001111111
Q ss_pred ---HHHHHHHHHHh---cCCceEEEEecCCCc
Q 005181 111 ---MELITTLRDHL---KDKSYMVVFDDVWKI 136 (710)
Q Consensus 111 ---~~~~~~~~~~l---~~~~~LlvlDdv~~~ 136 (710)
...+-.+-+++ +++++|+++|++-..
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 218 MRVVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 12233344554 378999999999543
No 376
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.69 E-value=0.065 Score=50.65 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++++|.|+.|.||||+++.++-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 89999999999999999988643
No 377
>PTZ00035 Rad51 protein; Provisional
Probab=95.68 E-value=0.052 Score=55.76 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=37.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCccc---c-cCcCcEEEEEeCCCCCHHHHHHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGL---K-THFNCRAWITVGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~---~-~~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (710)
...++.|+|++|+||||++.+++-.... . +.-..++|++....+..+. +.++++.+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~ 176 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERF 176 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHh
Confidence 3578899999999999999998754211 1 1223577998877666554 44444443
No 378
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.68 E-value=0.04 Score=56.96 Aligned_cols=104 Identities=20% Similarity=0.305 Sum_probs=59.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
...+-+.|||+.|.|||.|+-.+++....+.+- .+ ....+..++-+.+....+.. +...
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~--R~--------HFh~Fm~~vh~~l~~~~~~~-----------~~l~ 118 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR--RV--------HFHEFMLDVHSRLHQLRGQD-----------DPLP 118 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccc--cc--------cccHHHHHHHHHHHHHhCCC-----------ccHH
Confidence 347889999999999999999999874332111 11 11233444444443332111 2234
Q ss_pred HHHHHhcCCceEEEEecCCCcc-----hHHHHHHhcCCCCCCcEEEEEcCchh
Q 005181 116 TLRDHLKDKSYMVVFDDVWKID-----FWGDVEYALLDSKKCGRIIVTTRHMN 163 (710)
Q Consensus 116 ~~~~~l~~~~~LlvlDdv~~~~-----~~~~~~~~l~~~~~~~~ilvTtR~~~ 163 (710)
.+...+.++..+|.||.+.-.+ .+..+...+. ..| .++|+|.|..
T Consensus 119 ~va~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~g-vvlVaTSN~~ 168 (362)
T PF03969_consen 119 QVADELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRG-VVLVATSNRP 168 (362)
T ss_pred HHHHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCC-CEEEecCCCC
Confidence 4455666777799999974433 2333333332 344 4777776653
No 379
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.67 E-value=0.11 Score=48.23 Aligned_cols=126 Identities=12% Similarity=0.124 Sum_probs=63.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeC--CCCCHHHHH------HHHHHHHhhhcCCCCCcccc
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVG--KEYKKNDLL------RTILKEFHRVANQPAPVEIH 106 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~--~~~~~~~~~------~~i~~~l~~~~~~~~~~~~~ 106 (710)
-....+++|.|+.|.|||||++.++... ....+.+++.-. ...+..... .++++.++....... ...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~--~~~ 96 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADR--PFN 96 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcC--Ccc
Confidence 4456789999999999999999998862 223455554311 111111111 112333332211000 111
Q ss_pred chhHHH-HHHHHHHHhcCCceEEEEecCCCc---chHHHHHHhcCCC-CC-CcEEEEEcCchhhh
Q 005181 107 DMEEME-LITTLRDHLKDKSYMVVFDDVWKI---DFWGDVEYALLDS-KK-CGRIIVTTRHMNVA 165 (710)
Q Consensus 107 ~~~~~~-~~~~~~~~l~~~~~LlvlDdv~~~---~~~~~~~~~l~~~-~~-~~~ilvTtR~~~~~ 165 (710)
...-.+ ..-.+-..+-..+-++++|+.-.. +..+.+...+... .. +..+|++|.+....
T Consensus 97 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 111111 122333455567778999997532 2233333333322 12 55788888876544
No 380
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.66 E-value=0.046 Score=55.92 Aligned_cols=55 Identities=16% Similarity=0.293 Sum_probs=38.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCccccc----CcCcEEEEEeCCCCCHHHHHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKT----HFNCRAWITVGKEYKKNDLLRTILKE 92 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (710)
..+++-|+|++|+|||+++.+++....... .-..++|++....++.+.+. ++++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~ 152 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEA 152 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHH
Confidence 357889999999999999999986632211 11378999988877765433 34443
No 381
>PRK08149 ATP synthase SpaL; Validated
Probab=95.66 E-value=0.041 Score=57.79 Aligned_cols=95 Identities=12% Similarity=0.179 Sum_probs=50.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHHHHHHHhhhcCCCCCccccchh----
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRTILKEFHRVANQPAPVEIHDME---- 109 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~---- 109 (710)
-.....++|.|++|+|||||+..++... .-+.+++..+.... ...++..+.........- .......+..
T Consensus 148 i~~Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~-~vV~~~sd~p~~~r 222 (428)
T PRK08149 148 CGVGQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKC-VLVYATSDFSSVDR 222 (428)
T ss_pred EecCCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccce-EEEEECCCCCHHHH
Confidence 3445678999999999999999998762 22333444343332 334444444443211100 0000001111
Q ss_pred --H----HHHHHHHHHHhcCCceEEEEecCCCc
Q 005181 110 --E----MELITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 110 --~----~~~~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
. ..+++++++ +++++|+++||+-..
T Consensus 223 ~~a~~~a~tiAE~fr~--~G~~Vll~~DslTr~ 253 (428)
T PRK08149 223 CNAALVATTVAEYFRD--QGKRVVLFIDSMTRY 253 (428)
T ss_pred HhHHHHHHHHHHHHHH--cCCCEEEEccchHHH
Confidence 1 123444443 478999999998554
No 382
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.65 E-value=0.0095 Score=55.75 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++.+|+|.|.+|+||||+|+++++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999888
No 383
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.65 E-value=0.0072 Score=50.67 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 005181 41 VAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 41 i~i~G~~GvGKTtla~~~~~~ 61 (710)
|.|+|++|+|||++|..++..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998877
No 384
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.65 E-value=0.2 Score=49.74 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=38.0
Q ss_pred CCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhccCCCCcceEEccCC
Q 005181 123 DKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAKYCKSSSSVHVHELETL 182 (710)
Q Consensus 123 ~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~~~~~~~~~~~~~l~~l 182 (710)
++.=++|+|+++... ....++..+-..+.++.+|++|.+ ..+........ +.+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRc--q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS--LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcc--eEEEccch
Confidence 445588999998875 566788888777777766665555 45554433221 56777765
No 385
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.65 E-value=0.003 Score=53.51 Aligned_cols=28 Identities=39% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHhhCCcccccCcCc
Q 005181 41 VAVVGEGGLGKTTVAGKIFNSEGLKTHFNC 70 (710)
Q Consensus 41 i~i~G~~GvGKTtla~~~~~~~~~~~~f~~ 70 (710)
|.|+|.+|+||||+|++++.. ....|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCceeE
Confidence 679999999999999999987 5666643
No 386
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.64 E-value=0.01 Score=56.81 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+..+|+|.|++|+||||||+.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999876
No 387
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.1 Score=52.78 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....+.|.++||+|.|||-.|++++.+
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~ 407 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARH 407 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhh
Confidence 444689999999999999999999887
No 388
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.61 E-value=0.1 Score=51.04 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=76.0
Q ss_pred CCceeecccc---hhhc---cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDN---NQLI---QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~---~~~i---~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
.+.|+|-... +..+ ....+.+.++|.+|+|||+-++++++. .+..+.+..+...+...++..+.....
T Consensus 71 ~~~~l~tkt~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~ 144 (297)
T COG2842 71 APDFLETKTVRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAF 144 (297)
T ss_pred cccccccchhHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHh
Confidence 4567775553 3333 444458999999999999999999886 233444567777777777777766655
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCC
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLD 148 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~ 148 (710)
... +....+....+...+++..=+++.|+++... .++.+......
T Consensus 145 ~~~---------~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 145 GAT---------DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred ccc---------chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 432 2244466777777888888899999998763 45555444333
No 389
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.61 E-value=0.11 Score=46.20 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-....+++|.|+.|.|||||++.++..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 445678999999999999999999886
No 390
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.023 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|.|.|++|+||||+|+++++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999887
No 391
>PRK06547 hypothetical protein; Provisional
Probab=95.59 E-value=0.01 Score=54.48 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
......|+|.|++|+||||+|+.+++.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999876
No 392
>PRK05922 type III secretion system ATPase; Validated
Probab=95.59 E-value=0.059 Score=56.62 Aligned_cols=97 Identities=9% Similarity=0.125 Sum_probs=49.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchhH---
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDMEE--- 110 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--- 110 (710)
-.....++|.|+.|+|||||++.++... ..+..+++.+..... ..+.+.+........ .-.......+...
T Consensus 154 I~~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~-rTVlv~atsd~~~~~r 228 (434)
T PRK05922 154 LGKGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQ-RTIIIASPAHETAPTK 228 (434)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhcccc-ceEEEEECCCCCHHHH
Confidence 3344568999999999999999998762 223444444444322 223333332221110 0000001111111
Q ss_pred ---HHHHHHHHHHh--cCCceEEEEecCCCc
Q 005181 111 ---MELITTLRDHL--KDKSYMVVFDDVWKI 136 (710)
Q Consensus 111 ---~~~~~~~~~~l--~~~~~LlvlDdv~~~ 136 (710)
...+-.+-+++ +++++|+++||+-..
T Consensus 229 ~~a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 229 VIAGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11222333444 478999999999654
No 393
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.58 E-value=0.037 Score=56.30 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=37.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCccc---cc-CcCcEEEEEeCCCCCHHHHHHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGL---KT-HFNCRAWITVGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~---~~-~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (710)
...++.|+|++|+||||++.+++..... .+ .-..++|++....+.... +.++++.+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~ 154 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERY 154 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHc
Confidence 3678999999999999999998753111 11 113579998877766654 33344443
No 394
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.58 E-value=0.044 Score=50.04 Aligned_cols=116 Identities=11% Similarity=0.064 Sum_probs=59.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC--CHHHHHHHHHHHHhhhcCCCCCccccchhHH-
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY--KKNDLLRTILKEFHRVANQPAPVEIHDMEEM- 111 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~- 111 (710)
-..-.+++|.|+.|+|||||++.++... ....+.+++.-.... +..... ...+... .. ....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~------~q---LS~G~ 87 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDAR---RAGIAMV------YQ---LSVGE 87 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHH---hcCeEEE------Ee---cCHHH
Confidence 4456789999999999999999998762 223455555321111 111100 0011000 00 1111
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCcc---hHHHHHHhcCCC-CCCcEEEEEcCchhhh
Q 005181 112 ELITTLRDHLKDKSYMVVFDDVWKID---FWGDVEYALLDS-KKCGRIIVTTRHMNVA 165 (710)
Q Consensus 112 ~~~~~~~~~l~~~~~LlvlDdv~~~~---~~~~~~~~l~~~-~~~~~ilvTtR~~~~~ 165 (710)
...-.+-..+-.++=++++|+....- ....+...+... ..+..||++|.+....
T Consensus 88 ~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 88 RQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 11222334455567788889975432 223333333222 2355688888886543
No 395
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.57 E-value=0.058 Score=54.61 Aligned_cols=94 Identities=16% Similarity=0.270 Sum_probs=49.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC-CCCHHHHHHHHHHHHhhhcCCCCCccccchhH----
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK-EYKKNDLLRTILKEFHRVANQPAPVEIHDMEE---- 110 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~---- 110 (710)
.....++|.|+.|+|||||+..++... .. +..++.-+.. .....++.......-....- .......+...
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~--~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rt-vvv~~t~d~~~~~r~ 141 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGT--TA--DVNVIALIGERGREVREFIEKDLGEEGLKRS-VVVVATSDESPLLRV 141 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC--CC--CEEEEEEEecCCccHHHHHHHHHhcCccceE-EEEEcCCCCCHHHHH
Confidence 344678999999999999999998763 22 2334444432 23334444433332111000 00001111111
Q ss_pred ------HHHHHHHHHHhcCCceEEEEecCCCc
Q 005181 111 ------MELITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 111 ------~~~~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
...++++++ +++.+|+++||+-..
T Consensus 142 ~~~~~a~~~AEyfr~--~g~~Vll~~Dsltr~ 171 (326)
T cd01136 142 KAAYTATAIAEYFRD--QGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHHH--cCCCeEEEeccchHH
Confidence 133444443 478999999998554
No 396
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.57 E-value=0.0071 Score=52.96 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=31.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhh
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRV 96 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~ 96 (710)
+|+|.|++|+||||+|+.++++. . .=+++ .-.++++++++.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~--g-----l~~vs------aG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL--G-----LKLVS------AGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh--C-----Cceee------ccHHHHHHHHHcCCC
Confidence 68999999999999999998872 1 11222 234577777776543
No 397
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.0089 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+|+|-||-|+||||||+.++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 578999999999999999999888
No 398
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.54 E-value=0.0066 Score=34.13 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=5.7
Q ss_pred CEEEcCCCccccccc
Q 005181 477 EILDLKNTLVSELPV 491 (710)
Q Consensus 477 ~~L~l~~n~~~~~~~ 491 (710)
++|||++|.++.+|+
T Consensus 3 ~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 3 EYLDLSGNNLTSIPS 17 (22)
T ss_dssp SEEEETSSEESEEGT
T ss_pred cEEECCCCcCEeCCh
Confidence 333333333333333
No 399
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.53 E-value=0.0064 Score=34.18 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=17.9
Q ss_pred cceEEEeccccccccCcchhcc
Q 005181 452 NLHYLSVKNTEVKIIPKSIRNL 473 (710)
Q Consensus 452 ~L~~L~l~~n~i~~lp~~~~~l 473 (710)
+|++|++++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5889999999999998887653
No 400
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.52 E-value=0.052 Score=57.13 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=52.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHHHHHHHhhhcCCCCCccccchhH---
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRTILKEFHRVANQPAPVEIHDMEE--- 110 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--- 110 (710)
-.....++|.|+.|+|||||+.+++... . .+.++++-+.... ...++.++.+..-....- .......+...
T Consensus 155 i~~Gqri~I~G~sG~GKTtLL~~I~~~~--~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rs-vvv~atsd~~~~~r 229 (442)
T PRK08927 155 CCRGQRMGIFAGSGVGKSVLLSMLARNA--D--ADVSVIGLIGERGREVQEFLQDDLGPEGLARS-VVVVATSDEPALMR 229 (442)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc--C--CCEEEEEEEecCcHHHHHHHHHHhhccCceeE-EEEEECCCCCHHHH
Confidence 4455788999999999999999998763 1 2445556555443 233444444332111000 00001111111
Q ss_pred -------HHHHHHHHHHhcCCceEEEEecCCCc
Q 005181 111 -------MELITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 111 -------~~~~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
-.+++++++ +++++|+++||+-..
T Consensus 230 ~~a~~~a~tiAEyfrd--~G~~Vll~~DslTr~ 260 (442)
T PRK08927 230 RQAAYLTLAIAEYFRD--QGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHHH--CCCcEEEEEeCcHHH
Confidence 123444443 478999999999554
No 401
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.52 E-value=0.056 Score=56.82 Aligned_cols=95 Identities=17% Similarity=0.257 Sum_probs=53.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchhH---
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDMEE--- 110 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--- 110 (710)
-.....++|.|++|+|||||+..++... . -+.++++-+..... ..++.+..+..-... .-.......+...
T Consensus 159 i~~Gq~~~I~G~sG~GKStLl~~Ia~~~--~--~dv~V~~liGERgrEv~ef~~~~l~~~~l~-rtvvv~atsd~p~~~R 233 (439)
T PRK06936 159 CGEGQRMGIFAAAGGGKSTLLASLIRSA--E--VDVTVLALIGERGREVREFIESDLGEEGLR-KAVLVVATSDRPSMER 233 (439)
T ss_pred ecCCCEEEEECCCCCChHHHHHHHhcCC--C--CCEEEEEEEccCcHHHHHHHHHHhcccccc-eeEEEEECCCCCHHHH
Confidence 4445688999999999999999998873 2 24667777765532 333333322211100 0000001111111
Q ss_pred -------HHHHHHHHHHhcCCceEEEEecCCCc
Q 005181 111 -------MELITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 111 -------~~~~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
-.++++++. +++++|+++|++-..
T Consensus 234 ~~a~~~a~tiAEyfrd--~G~~Vll~~DslTR~ 264 (439)
T PRK06936 234 AKAGFVATSIAEYFRD--QGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHHHH--cCCCEEEeccchhHH
Confidence 134444443 479999999999654
No 402
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.50 E-value=0.23 Score=47.02 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFN 60 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~ 60 (710)
..++++|.|+.|.||||+++.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 348899999999999999988753
No 403
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.49 E-value=0.046 Score=53.07 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+|+|.|.+|+||||+|+++.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~ 22 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI 22 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998776
No 404
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.48 E-value=0.06 Score=47.34 Aligned_cols=36 Identities=17% Similarity=-0.128 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEE
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWIT 75 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~ 75 (710)
.+.|.|+.|.|||+.+..++...........++|+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 478999999999999998877743333445666653
No 405
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.48 E-value=0.025 Score=56.23 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=36.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
-+..+++.|+|.+|+|||+++.+++.. ...+...++||+....
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES 62 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC
Confidence 456789999999999999999999998 4555778999988764
No 406
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.45 E-value=0.16 Score=46.79 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-....+++|.|+.|.|||||++.++..
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 445678999999999999999999886
No 407
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.44 E-value=0.014 Score=54.41 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+.++|+|+||+|+|||||++++...
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 35689999999999999999999776
No 408
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.43 E-value=0.034 Score=54.09 Aligned_cols=41 Identities=24% Similarity=0.200 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
....+.|.|++|+||||+|.+++... ......++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence 45789999999999999999987652 123457888887543
No 409
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.42 E-value=0.05 Score=62.30 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=41.1
Q ss_pred Cceeecccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 22 AGFSGKEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 22 ~~~vGre~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
..++|+...+..+ .....-|.|+|..|+|||++|+.+.+.- ...-...+.++|...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s--~r~~~~~v~i~c~~~ 438 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS--GRNNRRMVKMNCAAM 438 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc--CCCCCCeEEEecccC
Confidence 4699998777765 4556688899999999999999997752 222235566777654
No 410
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.42 E-value=0.2 Score=50.86 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=34.7
Q ss_pred eEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 176 VHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 176 ~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
.+++++++++|+..++.......-- ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l--~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL--RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc--ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999988754321 111234456677777779999654
No 411
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.42 E-value=0.1 Score=46.71 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++.|.|.+|+||||+|+.++..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 412
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.41 E-value=0.029 Score=54.49 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
..++=++.+||++|+||..+++.+++..
T Consensus 107 p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 107 PRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred CCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 4456789999999999999999998873
No 413
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.41 E-value=0.087 Score=48.65 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-....+++|.|+.|.|||||++.++..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 445678999999999999999999876
No 414
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.41 E-value=0.075 Score=52.24 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=37.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKE 92 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (710)
..++.|.|++|+|||+++.+++.+.. ..+-..++|++... +..++...+...
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 46889999999999999999987742 22234678887765 455566655443
No 415
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.021 Score=53.89 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=26.3
Q ss_pred chhhc---cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 30 NNQLI---QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 30 ~~~~i---~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.++.+ -..-.+++|+|++|+|||||++.++--
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 44555 455679999999999999999999875
No 416
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.40 E-value=0.011 Score=54.84 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.++|.+.|++|+||||+|++++..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999776
No 417
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.40 E-value=0.017 Score=55.49 Aligned_cols=40 Identities=18% Similarity=0.131 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
+|+|.|++|+||||+|+.++........-..+..++....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 4899999999999999999876321011123455555544
No 418
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.39 E-value=0.05 Score=58.29 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
..++.|.|++|+||||++.+++... ...-..++|++...
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~--a~~g~~vlYvs~Ee 118 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARL--AAAGGKVLYVSGEE 118 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccc
Confidence 5689999999999999999998863 22234678887644
No 419
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.39 E-value=0.013 Score=54.72 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEE
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWI 74 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v 74 (710)
.+.++|+||+|+|||||+.+++.. ....|..++..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--cccccccceee
Confidence 578999999999999999999876 45566444443
No 420
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.36 E-value=0.037 Score=52.23 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCccccc--------CcCcEEEEEeCCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKT--------HFNCRAWITVGKE 79 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~--------~f~~~~~v~~~~~ 79 (710)
.....+.|.|++|+||||++.+++....... .-..++|+.....
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 3456888999999999999999877642211 2237888887665
No 421
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.36 E-value=0.014 Score=52.75 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...++|.||+|+|||||++++.++
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999999887
No 422
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.36 E-value=0.015 Score=55.18 Aligned_cols=31 Identities=35% Similarity=0.437 Sum_probs=26.1
Q ss_pred hhhccCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 31 NQLIQSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 31 ~~~i~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-++-.....+|+|.|++|+||||+|+.++..
T Consensus 17 ~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 17 EQLHGHKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred HHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3334567789999999999999999999876
No 423
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.36 E-value=0.07 Score=56.09 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=22.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-.....++|.|+.|+|||||+..++..
T Consensus 134 i~~Gq~~~I~G~sG~GKTtLl~~I~~~ 160 (411)
T TIGR03496 134 VGRGQRMGIFAGSGVGKSTLLGMMARY 160 (411)
T ss_pred EecCcEEEEECCCCCCHHHHHHHHhcC
Confidence 334467899999999999999998876
No 424
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.086 Score=57.81 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=32.4
Q ss_pred ceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 175 HVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 175 ~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
+.++++.+++++-.++|+.+.... .-......+.+++++.|+-.
T Consensus 556 ~ei~~~~lse~qRl~iLq~y~~~~------~~n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 556 HEIEVPALSEEQRLEILQWYLNHL------PLNQDVNLKQLARKTSGFSF 599 (953)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcc------ccchHHHHHHHHHhcCCCCH
Confidence 578999999999999999997432 22233456778888888643
No 425
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.17 Score=46.71 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-....+++|.|+.|.|||||++.++..
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 445678999999999999999999886
No 426
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.33 E-value=0.016 Score=53.79 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
...+|+|.|++|+||||+|++++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998873
No 427
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.33 E-value=0.0088 Score=57.61 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhh
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIF 59 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~ 59 (710)
...++++|.|+.|.||||+.+.++
T Consensus 28 ~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred cCCeEEEEECCCCCChHHHHHHHH
Confidence 357899999999999999988865
No 428
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.33 E-value=0.056 Score=57.13 Aligned_cols=100 Identities=13% Similarity=0.203 Sum_probs=53.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHHHHHHHhhhcCCCCCccccchhH---
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRTILKEFHRVANQPAPVEIHDMEE--- 110 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--- 110 (710)
-..-..++|.|.+|+|||||+.+++....... -+.++++-+.... ...++++++...=....- .......+...
T Consensus 141 igkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rs-vvV~atsd~p~~~r 218 (463)
T PRK09280 141 YAKGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKT-ALVFGQMNEPPGAR 218 (463)
T ss_pred cccCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCccee-EEEEECCCCCHHHH
Confidence 34456789999999999999998876632221 1356677665543 233444444432110000 00001111111
Q ss_pred ---HHHHHHHHHHh---cCCceEEEEecCCCc
Q 005181 111 ---MELITTLRDHL---KDKSYMVVFDDVWKI 136 (710)
Q Consensus 111 ---~~~~~~~~~~l---~~~~~LlvlDdv~~~ 136 (710)
...+-.+-+++ +++++|+++|++-..
T Consensus 219 ~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 219 LRVALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 12233344555 578999999999543
No 429
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.31 E-value=0.33 Score=48.41 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=46.0
Q ss_pred CCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhccCCCCcceEEccCCCchhHHHHHHH
Q 005181 123 DKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEAWKLFCR 193 (710)
Q Consensus 123 ~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~ 193 (710)
+++=++|+|+++... ....++..+-..+.++.+|++|.+ ..+........ +.+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRc--q~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRT--QIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcc--eeeeCCC-cHHHHHHHHHH
Confidence 455689999999875 566788888877777766666654 45665554432 6777766 66666666653
No 430
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.31 E-value=0.02 Score=59.19 Aligned_cols=41 Identities=17% Similarity=0.379 Sum_probs=31.6
Q ss_pred CCceeecccchhhc-----c--------------CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 21 HAGFSGKEDNNQLI-----Q--------------SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~--------------~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+..++|.++..+.+ . -..+.|.++||+|+|||++|++++..
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45677777776655 1 01368899999999999999999887
No 431
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.30 E-value=0.2 Score=47.90 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=26.5
Q ss_pred ccchhhc---cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 28 EDNNQLI---QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 28 e~~~~~i---~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...++.+ -.....|+|.|++|+|||||.+.++--
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344444 445678999999999999999999864
No 432
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.30 E-value=0.057 Score=50.75 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=31.9
Q ss_pred Cceeecccchhhc---------cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 22 AGFSGKEDNNQLI---------QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 22 ~~~vGre~~~~~i---------~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..++|.|..-+.+ ......|.+||.-|.|||.|++++.+.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e 108 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNE 108 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHH
Confidence 4588877766665 334567889999999999999999877
No 433
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.30 E-value=0.079 Score=53.52 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=33.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK 81 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (710)
-.+-..++|.|+.|+|||+|+.++++.. +-+.++|+-+.....
T Consensus 154 i~kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~ 196 (369)
T cd01134 154 VVKGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGN 196 (369)
T ss_pred ccCCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChH
Confidence 3445688999999999999999998872 235788888876543
No 434
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.30 E-value=0.064 Score=52.56 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+..|.|++|+|||+||.+++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999754
No 435
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.30 E-value=0.07 Score=53.25 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....+|+|.|+.|+||||+|+.+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999877554
No 436
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.28 E-value=0.015 Score=51.32 Aligned_cols=21 Identities=24% Similarity=0.648 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 005181 41 VAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 41 i~i~G~~GvGKTtla~~~~~~ 61 (710)
++|.|++|+|||||++.+++.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999876
No 437
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.28 E-value=0.078 Score=60.38 Aligned_cols=129 Identities=19% Similarity=0.267 Sum_probs=75.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCC------------CC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQP------------AP 102 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~------------~~ 102 (710)
-..+.++.|.|+.|.||||-.-+++.+.-. ...+.|-+.=-+......+...++++++...++. ..
T Consensus 62 i~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~ 139 (845)
T COG1643 62 IEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPR 139 (845)
T ss_pred HHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCC
Confidence 556789999999999999999999877311 2234454433333344566777777777643211 11
Q ss_pred ccccchhHHHHHHHHHH-HhcCCceEEEEecCCCcc-----hHHHHHHhcCCCCCCcEEEEEcCchhhh
Q 005181 103 VEIHDMEEMELITTLRD-HLKDKSYMVVFDDVWKID-----FWGDVEYALLDSKKCGRIIVTTRHMNVA 165 (710)
Q Consensus 103 ~~~~~~~~~~~~~~~~~-~l~~~~~LlvlDdv~~~~-----~~~~~~~~l~~~~~~~~ilvTtR~~~~~ 165 (710)
...+-++...+...+.. .+=.+=-.+|+|.+.+.. -++-+...+......-||||+|-.-+..
T Consensus 140 Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~ 208 (845)
T COG1643 140 TRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAE 208 (845)
T ss_pred ceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHH
Confidence 12233455555555552 222333478999998764 2222333333444457999988875433
No 438
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.28 E-value=0.012 Score=54.48 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....|.|+|++|+||||+|+++++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999887
No 439
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.27 E-value=0.015 Score=54.54 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...+|+|.|++|+||||+|+.+++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999765
No 440
>PRK03839 putative kinase; Provisional
Probab=95.26 E-value=0.011 Score=55.08 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|+|.|++|+||||+|+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999887
No 441
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.26 E-value=0.055 Score=58.03 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
..++.|.|.+|+||||++.+++... ...-..++|++...
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~--a~~g~kvlYvs~EE 132 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQL--AKNQMKVLYVSGEE 132 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEECcC
Confidence 5789999999999999999998763 22224688887654
No 442
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.25 E-value=0.056 Score=57.00 Aligned_cols=100 Identities=12% Similarity=0.225 Sum_probs=55.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchh----
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDME---- 109 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~---- 109 (710)
-..-..++|.|.+|+|||+|+.+++.... +.+-+.++|+-+..... ..++.+++...-... .-.......+..
T Consensus 135 igkGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~-rtvvv~~ts~~~~~~r 212 (449)
T TIGR03305 135 LERGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLD-NTVMVFGQMNEPPGAR 212 (449)
T ss_pred cccCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccc-eEEEEEeCCCCCHHHH
Confidence 34456789999999999999999887732 22236778887765543 334444443321100 000000011111
Q ss_pred --HHHHHHHHHHHhc---CCceEEEEecCCCc
Q 005181 110 --EMELITTLRDHLK---DKSYMVVFDDVWKI 136 (710)
Q Consensus 110 --~~~~~~~~~~~l~---~~~~LlvlDdv~~~ 136 (710)
....+-.+-++++ ++++|+++||+-..
T Consensus 213 ~~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 213 FRVGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 1122333445543 58999999999554
No 443
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.22 E-value=0.045 Score=56.27 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=40.0
Q ss_pred CCceeecccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 21 HAGFSGKEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 21 ~~~~vGre~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
.+.++|+...+.++ .....-|.|+|..|+||+++|+.+... ....-...+.++|...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~--s~r~~~pfv~v~c~~~ 68 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAAL 68 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh--CCccCCCeEEEeCCCC
Confidence 35689998887776 444567889999999999999998654 2212224456666654
No 444
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.21 E-value=0.086 Score=55.67 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.....++|.|+.|+|||||+..++..
T Consensus 166 ~~GqrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 166 GRGQRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33457899999999999999999875
No 445
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.18 E-value=0.016 Score=54.45 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=28.6
Q ss_pred EEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 41 VAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 41 i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
+.|.|++|+|||++|.+++... ...-..++|++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~--~~~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG--LARGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCCC
Confidence 6799999999999999998773 233456888876543
No 446
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.16 E-value=0.016 Score=51.58 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=27.9
Q ss_pred eecccchhhccCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 25 SGKEDNNQLIQSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 25 vGre~~~~~i~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
|.+++....-..+..+|.++|++|+||||+|.++.+.
T Consensus 10 v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 10 VTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred cCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 3333333333556689999999999999999999876
No 447
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.16 E-value=0.14 Score=48.55 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFN 60 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~ 60 (710)
.++++|.|+.|.||||+.+.++.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 38999999999999999999973
No 448
>COG4240 Predicted kinase [General function prediction only]
Probab=95.16 E-value=0.053 Score=50.32 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=55.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELI 114 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (710)
.+++-+++|+||-|+||||++..++.....++. ..+..+++.+-.-..+-...++++..........+..++.+. ..
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tl--gl 123 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTL--GL 123 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHH--HH
Confidence 445779999999999999999999887433332 477777776655555555666666432222233445555543 35
Q ss_pred HHHHHHhcCCc
Q 005181 115 TTLRDHLKDKS 125 (710)
Q Consensus 115 ~~~~~~l~~~~ 125 (710)
..+....+++.
T Consensus 124 nVLnai~~g~~ 134 (300)
T COG4240 124 NVLNAIARGGP 134 (300)
T ss_pred HHHHHHhcCCC
Confidence 55555556553
No 449
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.15 E-value=0.016 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++++|.|++|+||||++++++..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998776
No 450
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.14 E-value=0.017 Score=53.82 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+.++|.|++|+||||+|+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57899999999999999999885
No 451
>PRK04040 adenylate kinase; Provisional
Probab=95.13 E-value=0.015 Score=54.34 Aligned_cols=24 Identities=46% Similarity=0.598 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+|+|+|++|+||||+++.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 452
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.13 E-value=0.24 Score=46.96 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhh
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIF 59 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~ 59 (710)
.++.++++|.|+.|.||||+.+.+.
T Consensus 25 ~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 25 GENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CCCceEEEEECCCCCChHHHHHHHH
Confidence 4445789999999999999999987
No 453
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.08 E-value=0.18 Score=53.53 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=50.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHH-hhCCcccccCcCcE-EEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchh--
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGK-IFNSEGLKTHFNCR-AWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDME-- 109 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~-~~~~~~~~~~f~~~-~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~-- 109 (710)
-..-..++|.|..|+|||+||.. +++. . .-+.+ +|+-+..... ..++.+++...=....- .......+..
T Consensus 138 igrGQR~~I~g~~g~GKt~Lal~~I~~q--~--~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~t-vvV~atad~~~~ 212 (485)
T CHL00059 138 IGRGQRELIIGDRQTGKTAVATDTILNQ--K--GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYT-IVVAETADSPAT 212 (485)
T ss_pred cccCCEEEeecCCCCCHHHHHHHHHHhc--c--cCCeEEEEEEecCCchHHHHHHHHhhcccchhce-EEEEeCCCCCHH
Confidence 33446788999999999999654 4444 1 22434 7777765543 33344444332111000 0000000000
Q ss_pred --------HHHHHHHHHHHhcCCceEEEEecCCCc
Q 005181 110 --------EMELITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 110 --------~~~~~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
-..++++++. +++++|+|+||+-..
T Consensus 213 ~r~~ap~~a~aiAEyfr~--~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 213 LQYLAPYTGAALAEYFMY--RGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHHHHHhhHHHHHHH--cCCCEEEEEcChhHH
Confidence 0134444443 478999999999654
No 454
>PRK00625 shikimate kinase; Provisional
Probab=95.07 E-value=0.014 Score=53.57 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|.|+|++|+||||+++.++++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999876
No 455
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.07 E-value=0.018 Score=50.74 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
.+|.|+|+.|+|||||++.+++.. .+..+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 478999999999999999999985 234455554555554
No 456
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.07 E-value=0.028 Score=56.81 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=34.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLR 87 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (710)
.+++.+.|-|||||||+|.+.+-.. ......++-|+.....+..+.+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~l--A~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKL--AESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHH--HHcCCcEEEEEeCCCCchHhhhc
Confidence 5789999999999999999976663 23334577777766655544443
No 457
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.06 E-value=0.079 Score=55.76 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=29.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
-.....++|.|+.|+|||||+..++... +.+..++..+...
T Consensus 152 i~~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeR 192 (433)
T PRK07594 152 CGEGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGER 192 (433)
T ss_pred cCCCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCC
Confidence 4445688999999999999999998763 2333455545443
No 458
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.04 E-value=0.019 Score=58.16 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK 81 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (710)
|++.+.|-|||||||+|.+.+-.. ......++-++.+...+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~--A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALAL--ARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH--HHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHH--hhCCCCeeEeecCCCcc
Confidence 688999999999999998887763 22334567676655444
No 459
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.03 E-value=0.14 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHhh
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIF 59 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~ 59 (710)
.++++|.|+.|.||||+.+.++
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3899999999999999999985
No 460
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.03 E-value=0.087 Score=55.57 Aligned_cols=100 Identities=14% Similarity=0.218 Sum_probs=54.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHHHHHHHhhhcCCCCCccccchhH---
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRTILKEFHRVANQPAPVEIHDMEE--- 110 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--- 110 (710)
-..-..++|.|.+|+|||||+.+++..... .+-..++++-+.... ...++++++...=... .-.......+...
T Consensus 140 ig~GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~-rtvvV~atsd~p~~~R 217 (461)
T TIGR01039 140 YAKGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVID-KTALVYGQMNEPPGAR 217 (461)
T ss_pred cccCCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcc-eeEEEEECCCCCHHHH
Confidence 444567899999999999999998776311 112366777665543 2344444443211000 0000001111111
Q ss_pred ---HHHHHHHHHHh---cCCceEEEEecCCCc
Q 005181 111 ---MELITTLRDHL---KDKSYMVVFDDVWKI 136 (710)
Q Consensus 111 ---~~~~~~~~~~l---~~~~~LlvlDdv~~~ 136 (710)
...+-.+-+++ +++++|+++|++-..
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 218 MRVALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 12233444555 468999999999554
No 461
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.02 E-value=0.16 Score=48.74 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFN 60 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~ 60 (710)
...++++|.|+.|.||||+.+.++-
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457889999999999999988865
No 462
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.01 E-value=0.012 Score=56.50 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=30.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
.++..+|+|+|++|+|||||+.++....+.+++--.|+-|+=+.+++.-
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGG 74 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGG 74 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC--
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCC
Confidence 4567899999999999999999988775333333345555555555543
No 463
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.01 E-value=0.014 Score=54.23 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+|+|.|.+|+||||+|++++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 464
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.00 E-value=0.071 Score=56.05 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=22.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-.....++|.|+.|+|||||+..++..
T Consensus 137 i~~Gq~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 137 LCRGQRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred ccCCcEEEEECCCCCChHHHHHHHhCC
Confidence 334467899999999999999998876
No 465
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.98 E-value=0.026 Score=46.66 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhh
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIF 59 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~ 59 (710)
....++|.|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 35788999999999999999975
No 466
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.97 E-value=0.016 Score=54.97 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+|+|.|++|+||||+|+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999776
No 467
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.96 E-value=0.071 Score=53.71 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=52.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
..+++-|+|+.|+||||||.++... ....-..++|++..+..++ ..++.++..........+ ...++..+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P--~~~E~al~~ 122 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQP--DTGEQALWI 122 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE---SSHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchh-----hHHHhcCccccceEEecC--CcHHHHHHH
Confidence 3579999999999999999998876 3344456889988777554 333444332211100011 122455566
Q ss_pred HHHHhcCC-ceEEEEecCCCc
Q 005181 117 LRDHLKDK-SYMVVFDDVWKI 136 (710)
Q Consensus 117 ~~~~l~~~-~~LlvlDdv~~~ 136 (710)
+.+.++.. --++|+|.|...
T Consensus 123 ~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 123 AEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHHTTSESEEEEE-CTT-
T ss_pred HHHHhhcccccEEEEecCccc
Confidence 66666543 358899998543
No 468
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.96 E-value=0.098 Score=47.40 Aligned_cols=119 Identities=18% Similarity=0.125 Sum_probs=60.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
....+++|.|+.|.|||||++.++... . ...+.+++.-...... ........+..... ... . +...-
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~--~-~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q------lS~-G-~~~r~ 89 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLL--K-PTSGEILIDGKDIAKL--PLEELRRRIGYVPQ------LSG-G-QRQRV 89 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC--C-CCccEEEECCEEcccC--CHHHHHhceEEEee------CCH-H-HHHHH
Confidence 345799999999999999999998862 2 3445565532211110 00111111111000 000 0 11122
Q ss_pred HHHHHhcCCceEEEEecCCCcc---hHHHHHHhcCCC-CCCcEEEEEcCchhhhhh
Q 005181 116 TLRDHLKDKSYMVVFDDVWKID---FWGDVEYALLDS-KKCGRIIVTTRHMNVAKY 167 (710)
Q Consensus 116 ~~~~~l~~~~~LlvlDdv~~~~---~~~~~~~~l~~~-~~~~~ilvTtR~~~~~~~ 167 (710)
.+...+-..+=++++|+....- ....+...+... ..+..++++|.+......
T Consensus 90 ~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 90 ALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 2334444567788999975432 222233333221 124568888887665544
No 469
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.94 E-value=0.11 Score=54.47 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=32.5
Q ss_pred CCceeecccchhhc------------c--C---------CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 21 HAGFSGKEDNNQLI------------Q--S---------ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 21 ~~~~vGre~~~~~i------------~--~---------~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+..++|.++..+.+ . . ..+.+.|+||+|+|||++|+.++..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~ 139 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARI 139 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHh
Confidence 56689988887765 1 0 1257999999999999999999865
No 470
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.94 E-value=0.076 Score=55.78 Aligned_cols=102 Identities=14% Similarity=0.211 Sum_probs=56.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCccc------c-----cCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCc
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGL------K-----THFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPV 103 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~------~-----~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 103 (710)
-..-..++|.|.+|+|||||+.++++.... . +.=..+++.-+.......+.+.+.+.+-+...+-....
T Consensus 138 ig~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ 217 (466)
T TIGR01040 138 IARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFL 217 (466)
T ss_pred cccCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEE
Confidence 334467889999999999999999876321 0 00015566777766555555555555443111100000
Q ss_pred cccchhH------HHHHHHHHHHhc---CCceEEEEecCCCc
Q 005181 104 EIHDMEE------MELITTLRDHLK---DKSYMVVFDDVWKI 136 (710)
Q Consensus 104 ~~~~~~~------~~~~~~~~~~l~---~~~~LlvlDdv~~~ 136 (710)
...+... ...+-.+-++++ ++++|+++||+-..
T Consensus 218 atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 218 NLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred ECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 1111111 122333455555 58999999998543
No 471
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.93 E-value=0.022 Score=49.34 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
.....+|+|.|+-|+||||+++.+++..
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456799999999999999999998763
No 472
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.93 E-value=0.0015 Score=71.75 Aligned_cols=175 Identities=21% Similarity=0.156 Sum_probs=92.0
Q ss_pred hhhhhcccccccEEecCCCC-Ccc--CcccccCcccceEEEeccc--ccccc----CcchhcccCCCEEEcCCCc-cccc
Q 005181 420 MNASIANFKLMKVLDLEDAP-VDY--LPEGVGNLFNLHYLSVKNT--EVKII----PKSIRNLLSLEILDLKNTL-VSEL 489 (710)
Q Consensus 420 ~~~~~~~~~~L~~L~l~~n~-~~~--l~~~~~~l~~L~~L~l~~n--~i~~l----p~~~~~l~~L~~L~l~~n~-~~~~ 489 (710)
.......+++|+.|.+.++. +.. +-.....+++|+.|+++++ .+... ......+.+|+.|+++++. ++..
T Consensus 180 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 180 LLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred HHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch
Confidence 34445568889999988875 443 3345567889999999873 22211 1224456788888888665 4322
Q ss_pred c--ccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeecCCC----CCccccCCCCccEEEEEeecc
Q 005181 490 P--VEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKK----LPDWIFKLENLIRLGLELSGL 563 (710)
Q Consensus 490 ~--~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~----ip~~~~~l~~L~~L~L~~n~l 563 (710)
- .....+++|++|.+.++..++... +..+...+++|++|+|+++... +.....++++|+.|.+....
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~g------l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~- 332 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDEG------LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN- 332 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchhH------HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-
Confidence 1 112236778888766544333322 1233333445777777666211 22223345555554332221
Q ss_pred CCccccccccccccceEEeecccCC---ceeEEecCCCCcccEEEeccCC
Q 005181 564 AEEPIRVLQASPNLLELRLTGTYDY---ELFHFEAGWFPKLQKLLLWDFV 610 (710)
Q Consensus 564 ~~~~~~~l~~l~~L~~L~L~~n~~~---~~~~~~~~~~~~L~~L~L~~n~ 610 (710)
.++.++.+.+.+.... .........+++|+.+.+..+.
T Consensus 333 ---------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 333 ---------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred ---------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 1334444444433221 1222234566777777776665
No 473
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.93 E-value=0.064 Score=45.51 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+++-++.++|++|+|||.+++.+++.
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 445678899999999999999999877
No 474
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.92 E-value=0.021 Score=54.53 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...+++|+|++|+||||||+.++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4578999999999999999999876
No 475
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.92 E-value=0.89 Score=44.26 Aligned_cols=135 Identities=9% Similarity=-0.041 Sum_probs=68.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
..+....++|+.|+||.++|.+++...-..+..+ .|. .......+...-...-....+ .......+++.+
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~-----~Cg----~C~sC~~i~~~~HPDl~~i~p-~~~~I~id~ir~ 74 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANG-----FCK----TCESCLKILNGKYNDFYLIFD-QKNPIKKEDALS 74 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCC-----CCC----CCHHHHHHhcCCCCCEEEecC-CcccCCHHHHHH
Confidence 3456788999999999999999986531111100 111 111111111110000000000 001112222222
Q ss_pred HHHHH---h--cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc-hhhhhhccCCCCcceEEccCC
Q 005181 116 TLRDH---L--KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH-MNVAKYCKSSSSVHVHELETL 182 (710)
Q Consensus 116 ~~~~~---l--~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~-~~~~~~~~~~~~~~~~~l~~l 182 (710)
..+.. - .+.+=++|+|+++... ....++..+-..+.++.+|++|.+ ..+........ +.+.+.+.
T Consensus 75 l~~~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRC--q~~~~~~~ 147 (261)
T PRK05818 75 IINKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRC--VQYVVLSK 147 (261)
T ss_pred HHHHHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhhe--eeeecCCh
Confidence 22211 1 1334567999998875 677788888888788777666665 45555544321 45666555
No 476
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.91 E-value=0.07 Score=53.35 Aligned_cols=120 Identities=12% Similarity=0.207 Sum_probs=66.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCc-ccccCcCcEEEEE----eCCC-----CCHHH----HHHHHHHHHhhhcCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSE-GLKTHFNCRAWIT----VGKE-----YKKND----LLRTILKEFHRVANQP 100 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~-~~~~~f~~~~~v~----~~~~-----~~~~~----~~~~i~~~l~~~~~~~ 100 (710)
++....|.+.|.+|.|||.||.+++=.+ ..++.|..++-.. +.+. -+.++ ....+...+.......
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~ 321 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPN 321 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHHHHHhccc
Confidence 8889999999999999999998765332 2345555544221 1110 01111 2222222222211111
Q ss_pred CCccccchhHHHHHHHH----------HHHhcCC---ceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCch
Q 005181 101 APVEIHDMEEMELITTL----------RDHLKDK---SYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHM 162 (710)
Q Consensus 101 ~~~~~~~~~~~~~~~~~----------~~~l~~~---~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~ 162 (710)
... +...+.+ .++++++ +-++|+|.+.+.+. .++...+-..+.|+||+.|--..
T Consensus 322 ------~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsKIVl~gd~a 388 (436)
T COG1875 322 ------EPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSKIVLTGDPA 388 (436)
T ss_pred ------ccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCEEEEcCCHH
Confidence 111 1112222 1344554 46899999988764 24556677789999998876443
No 477
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.91 E-value=0.017 Score=64.05 Aligned_cols=75 Identities=20% Similarity=0.181 Sum_probs=53.8
Q ss_pred CCCceeecccchhhc---cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhh
Q 005181 20 PHAGFSGKEDNNQLI---QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRV 96 (710)
Q Consensus 20 ~~~~~vGre~~~~~i---~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~ 96 (710)
.-++++|.+..++.+ -...+.+.|+|++|+||||+|+.+++.. ...+++.++|... ...+...+++.+..+++..
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~~ 106 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVPAGKGKQ 106 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHHHhcCHH
Confidence 346789998888877 2223578899999999999999998873 3334577788655 3346677777777665543
No 478
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=94.91 E-value=0.15 Score=51.13 Aligned_cols=100 Identities=18% Similarity=0.344 Sum_probs=56.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC-CHHHHHHHHHHHHhhh--------cCCCCCcc-
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY-KKNDLLRTILKEFHRV--------ANQPAPVE- 104 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~- 104 (710)
-.+-+-+++.|-+|||||-+..++.+.. .+.|-...+|.-+.... ...++..++-+.-... .+++..+.
T Consensus 144 ~~kGgKiGLFGGAGVGKTVl~~ELI~Ni-a~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~ 222 (468)
T COG0055 144 YAKGGKIGLFGGAGVGKTVLIQELINNI-AKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARM 222 (468)
T ss_pred cccCceeeeeccCCccceeeHHHHHHHH-HHHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCccee
Confidence 3345788999999999999999999883 22333456676665432 3445555555432111 01111110
Q ss_pred ccchhHHHHHHHHHHHhcCCceEEEEecCCCc
Q 005181 105 IHDMEEMELITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
....+--..++++|.. .++.+|+++||+...
T Consensus 223 RValtGlT~AEyfRD~-~gqdVLlFIDNIfRf 253 (468)
T COG0055 223 RVALTGLTMAEYFRDE-EGQDVLLFIDNIFRF 253 (468)
T ss_pred eehhhhhhHHHHhhcc-cCCeEEEEehhhhHH
Confidence 0001111334444443 267899999999664
No 479
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.91 E-value=0.025 Score=53.95 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...+.++|.|++|+|||||+.++...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45688999999999999999998654
No 480
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=94.90 E-value=0.17 Score=53.90 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=51.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHH-HHhhCCcccccCcCc-EEEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchhH-
Q 005181 35 QSERSVVAVVGEGGLGKTTVA-GKIFNSEGLKTHFNC-RAWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDMEE- 110 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla-~~~~~~~~~~~~f~~-~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~- 110 (710)
-..-..++|.|..|+|||||| -.+++.. .-+. ++|+-+..... ..++.+.+...=....- .......+...
T Consensus 159 igrGQR~~Ifg~~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~t-vvV~atsd~p~~ 233 (497)
T TIGR03324 159 IGRGQRELILGDRQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYT-IVVVTEGNDPPG 233 (497)
T ss_pred cccCCEEEeecCCCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCccee-EEEEeCCCCCHH
Confidence 344467889999999999996 4666652 2344 67787776643 33444444332111000 00000011100
Q ss_pred -----HHHHHHHHHHh--cCCceEEEEecCCCc
Q 005181 111 -----MELITTLRDHL--KDKSYMVVFDDVWKI 136 (710)
Q Consensus 111 -----~~~~~~~~~~l--~~~~~LlvlDdv~~~ 136 (710)
...+..+-+++ +++++|+|+||+...
T Consensus 234 ~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 234 LQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 11122233444 578999999999554
No 481
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.89 E-value=0.082 Score=56.69 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=22.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+.-..++|+|++|+|||||+..+++.
T Consensus 413 IGkGQR~LIvgpp~aGKTtLL~~IAn~ 439 (672)
T PRK12678 413 IGKGQRGLIVSPPKAGKTTILQNIANA 439 (672)
T ss_pred cccCCEeEEeCCCCCCHHHHHHHHHHH
Confidence 344456789999999999999999986
No 482
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.89 E-value=0.021 Score=55.58 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=39.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLR 87 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (710)
.++..+|+|.|++|+||||+..++......+++-=.|+-|+-+.+++.-.++-
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 66778999999999999999999888764455544666677677776544443
No 483
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.85 E-value=0.037 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|+|.|++|+||||+|+.+++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999776
No 484
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.84 E-value=0.022 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+|.|.|++|+||||+|+.++++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999887
No 485
>PF13245 AAA_19: Part of AAA domain
Probab=94.84 E-value=0.028 Score=43.51 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=18.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+.+++.|.|++|.|||+++.+.+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5677889999999999555554443
No 486
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.82 E-value=0.042 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCc
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
.|+|.|+.|+||||+++.+++..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998873
No 487
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.79 E-value=0.024 Score=53.15 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..++|.|++|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999776
No 488
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.79 E-value=0.058 Score=59.42 Aligned_cols=96 Identities=20% Similarity=0.290 Sum_probs=55.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhc------CC-------CCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVA------NQ-------PAP 102 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~------~~-------~~~ 102 (710)
+..+++.|.|.+|+|||++|.+++... ....-..++|++.... .+++.+.+. .++-.. +. ...
T Consensus 29 p~Gs~~li~G~pGsGKT~l~~qf~~~~-~~~~ge~~lyis~ee~--~~~i~~~~~-~~g~d~~~~~~~g~l~~~~~~~~~ 104 (509)
T PRK09302 29 PKGRPTLVSGTAGTGKTLFALQFLVNG-IKRFDEPGVFVTFEES--PEDIIRNVA-SFGWDLQKLIDEGKLFILDASPDP 104 (509)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCEEEEEccCC--HHHHHHHHH-HcCCCHHHHhhCCeEEEEecCccc
Confidence 346899999999999999999998763 1222457899987764 333333332 222110 00 000
Q ss_pred cc---ccchhHHHHHHHHHHHhcC-CceEEEEecCCC
Q 005181 103 VE---IHDMEEMELITTLRDHLKD-KSYMVVFDDVWK 135 (710)
Q Consensus 103 ~~---~~~~~~~~~~~~~~~~l~~-~~~LlvlDdv~~ 135 (710)
.. ....+.+.+...+.+.... +.-.+|+|.+..
T Consensus 105 ~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 105 SEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred ccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 00 1122445566666665543 445699999864
No 489
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.78 E-value=0.0014 Score=60.72 Aligned_cols=87 Identities=20% Similarity=0.179 Sum_probs=77.1
Q ss_pred hhhhcccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCc
Q 005181 421 NASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLR 500 (710)
Q Consensus 421 ~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~ 500 (710)
...+..+...++||++.|++..+...|+.+..|..|+++.|.+..+|+.+..+..+..+++.+|.....|.++...+.++
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 34567788899999999998888788888999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccc
Q 005181 501 YLMVYRY 507 (710)
Q Consensus 501 ~L~l~~~ 507 (710)
++++.++
T Consensus 115 ~~e~k~~ 121 (326)
T KOG0473|consen 115 KNEQKKT 121 (326)
T ss_pred hhhhccC
Confidence 9988753
No 490
>PRK06217 hypothetical protein; Validated
Probab=94.77 E-value=0.018 Score=53.85 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCc
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
.|+|.|.+|+||||+|+++++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998773
No 491
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.77 E-value=0.061 Score=52.16 Aligned_cols=50 Identities=8% Similarity=0.240 Sum_probs=33.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTI 89 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (710)
+....+.|.|++|+||||+|.+++... ...-..++|++... +..+.++.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~--~~~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF--LQNGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEEeCCC--CHHHHHHHH
Confidence 335699999999999999998887763 12224567777443 444544444
No 492
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.74 E-value=0.016 Score=52.92 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 005181 41 VAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 41 i~i~G~~GvGKTtla~~~~~~ 61 (710)
|+|.|++|+||||+|++++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999876
No 493
>PRK13768 GTPase; Provisional
Probab=94.74 E-value=0.03 Score=55.21 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
..+++|.|++|+||||++..++... ......++.++...
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l--~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL--EEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH--HhcCCceEEEECCC
Confidence 3578999999999999999988763 23334556665543
No 494
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.73 E-value=0.12 Score=54.61 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-.....++|.|+.|+|||||+..++..
T Consensus 160 i~~Gq~~~I~G~sG~GKTtLl~~ia~~ 186 (441)
T PRK09099 160 LGEGQRMGIFAPAGVGKSTLMGMFARG 186 (441)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344578899999999999999999876
No 495
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.73 E-value=0.32 Score=51.26 Aligned_cols=128 Identities=15% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhH-----
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEE----- 110 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~----- 110 (710)
.....++|.|+.|+|||||+..++... +. ..+++.+.-.+..+..+++...+..-+.... .......+...
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~--~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~t-vvv~~tsd~s~~~r~r 229 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNA--KA-DINVISLVGERGREVKDFIRKELGEEGMRKS-VVVVATSDESHLMQLR 229 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC--CC-CeEEEEeCCCCcccHHHHHHHHhhhccccee-EEEEECCCCCHHHHHH
Confidence 344678999999999999999998873 21 2234433222334555555554444221100 00001111111
Q ss_pred -HHHHHHHHHHh--cCCceEEEEecCCCcc-hHHHHHHhcCCCC-CCcEEEEEcCchhhhhh
Q 005181 111 -MELITTLRDHL--KDKSYMVVFDDVWKID-FWGDVEYALLDSK-KCGRIIVTTRHMNVAKY 167 (710)
Q Consensus 111 -~~~~~~~~~~l--~~~~~LlvlDdv~~~~-~~~~~~~~l~~~~-~~~~ilvTtR~~~~~~~ 167 (710)
...+..+-+++ +++++|+++|+.-... ....+...+...+ .|.-..+.|.-..+...
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~~L~ER 291 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLER 291 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccchhHHHH
Confidence 12222333333 3689999999996654 2333333322211 25445555544444443
No 496
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.73 E-value=0.11 Score=51.55 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+..++.|.|.+|+|||||+.++.+.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 566789999999999999999999887
No 497
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.72 E-value=0.12 Score=43.98 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=25.9
Q ss_pred EEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 41 VAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 41 i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
|++.|.+|+||||++..++... ...-..++.+....
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l--~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYL--AEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCc
Confidence 7899999999999999998873 22223455555443
No 498
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.71 E-value=0.43 Score=55.03 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=61.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC----------cc----cccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS----------EG----LKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQP 100 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~----------~~----~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~ 100 (710)
....++++|+||.+.||||+.+.++-. +. .-..|+. +|..++...+...-+......+.
T Consensus 324 ~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~~m~------ 396 (782)
T PRK00409 324 GFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSGHMT------ 396 (782)
T ss_pred CCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHHHHH------
Confidence 456788999999999999999887522 00 1112222 34444433333222222222211
Q ss_pred CCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcch---HHH----HHHhcCCCCCCcEEEEEcCchhhhhhccC
Q 005181 101 APVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKIDF---WGD----VEYALLDSKKCGRIIVTTRHMNVAKYCKS 170 (710)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~~---~~~----~~~~l~~~~~~~~ilvTtR~~~~~~~~~~ 170 (710)
.... +-..+ ..+-|+++|......+ -.. +...+. ..|+.+|+||....+......
T Consensus 397 -----------~~~~-Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~ 458 (782)
T PRK00409 397 -----------NIVR-ILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYN 458 (782)
T ss_pred -----------HHHH-HHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhc
Confidence 1122 22222 4677999999865432 112 222332 246789999999877665443
No 499
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.69 E-value=0.11 Score=53.28 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=38.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCccc---ccCc-CcEEEEEeCCCCCHHHHHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGL---KTHF-NCRAWITVGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~---~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l 93 (710)
..++-|+|++|+|||++|.+++-.... .+.- ..++|++....+.++.+ .++++.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~ 181 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERF 181 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHc
Confidence 578889999999999999988743211 1111 26899999888777554 4455544
No 500
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.67 E-value=0.12 Score=52.97 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=34.0
Q ss_pred eecccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 25 SGKEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 25 vGre~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
+|+...++.+ .....-|.|.|..|+||+++|+.+.+.- ...-...+-|+|...
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s--~r~~~pfv~vnc~~~ 61 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS--KRWQGPLVKLNCAAL 61 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc--CccCCCeEEEeCCCC
Confidence 4555444444 4445678899999999999999986542 111223455666643
Done!