Query 005181
Match_columns 710
No_of_seqs 403 out of 4407
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 17:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.3E-40 7.9E-45 365.0 25.4 315 25-366 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.5E-34 5.2E-39 321.0 19.5 286 24-358 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-33 6.1E-38 344.1 30.0 314 17-365 119-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 9.6E-33 3.3E-37 309.3 26.4 310 18-362 120-449 (591)
5 3rgz_A Protein brassinosteroid 100.0 2.7E-29 9.2E-34 289.5 14.0 251 430-703 396-722 (768)
6 4ecn_A Leucine-rich repeat pro 100.0 3.9E-29 1.3E-33 285.8 15.1 262 429-706 549-847 (876)
7 4eco_A Uncharacterized protein 100.0 7.6E-29 2.6E-33 279.1 15.1 269 378-657 247-546 (636)
8 3rgz_A Protein brassinosteroid 100.0 6.6E-29 2.2E-33 286.2 11.3 258 428-707 294-560 (768)
9 3v47_A TOLL-like receptor 5B a 100.0 1.6E-28 5.4E-33 266.6 12.1 305 379-701 29-410 (455)
10 2id5_A Lingo-1, leucine rich r 99.9 1.1E-27 3.7E-32 261.4 17.1 296 379-699 31-333 (477)
11 4ecn_A Leucine-rich repeat pro 99.9 1.6E-27 5.4E-32 272.6 18.0 288 402-700 548-865 (876)
12 4fcg_A Uncharacterized protein 99.9 3.9E-27 1.3E-31 242.7 18.7 229 426-656 79-310 (328)
13 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.3E-27 4.5E-32 266.1 16.1 136 572-709 350-496 (562)
14 3vq2_A TLR4, TOLL-like recepto 99.9 5.7E-28 1.9E-32 272.1 13.0 88 570-657 419-507 (606)
15 2z7x_B TOLL-like receptor 1, v 99.9 2.1E-27 7.2E-32 262.2 16.7 320 380-709 21-467 (520)
16 4eco_A Uncharacterized protein 99.9 8.2E-28 2.8E-32 270.7 12.7 319 375-708 201-588 (636)
17 3t6q_A CD180 antigen; protein- 99.9 2.7E-27 9.4E-32 266.5 16.7 324 373-700 50-463 (606)
18 2z63_A TOLL-like receptor 4, v 99.9 1.5E-27 5E-32 266.9 12.5 137 571-709 369-517 (570)
19 2id5_A Lingo-1, leucine rich r 99.9 5.9E-27 2E-31 255.6 16.8 283 401-708 31-318 (477)
20 1ogq_A PGIP-2, polygalacturona 99.9 7E-28 2.4E-32 246.8 7.8 222 402-655 50-276 (313)
21 3t6q_A CD180 antigen; protein- 99.9 4.2E-27 1.4E-31 265.0 14.8 37 670-708 509-545 (606)
22 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-27 6.6E-32 243.5 9.3 243 380-657 50-301 (313)
23 4fmz_A Internalin; leucine ric 99.9 2.9E-26 1E-30 239.2 18.1 281 380-699 44-346 (347)
24 3o6n_A APL1; leucine-rich repe 99.9 1.5E-26 5.1E-31 245.4 15.1 295 379-700 44-353 (390)
25 4fmz_A Internalin; leucine ric 99.9 6.2E-26 2.1E-30 236.7 18.2 269 376-659 62-345 (347)
26 3v47_A TOLL-like receptor 5B a 99.9 6.5E-27 2.2E-31 253.8 11.0 282 373-657 47-405 (455)
27 1xku_A Decorin; proteoglycan, 99.9 2.5E-26 8.7E-31 237.7 14.5 290 381-697 32-330 (330)
28 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-26 5.8E-31 239.2 11.7 288 381-697 34-331 (332)
29 3j0a_A TOLL-like receptor 5; m 99.9 1.7E-25 5.7E-30 260.5 20.5 304 378-703 22-398 (844)
30 1o6v_A Internalin A; bacterial 99.9 1.3E-25 4.3E-30 243.9 17.8 302 376-705 64-394 (466)
31 3oja_B Anopheles plasmodium-re 99.9 6.8E-26 2.3E-30 253.6 15.9 292 380-699 51-358 (597)
32 3vq2_A TLR4, TOLL-like recepto 99.9 9.7E-26 3.3E-30 253.9 15.9 163 529-706 399-566 (606)
33 2z7x_B TOLL-like receptor 1, v 99.9 7.1E-26 2.4E-30 250.0 14.0 306 375-706 40-489 (520)
34 4fcg_A Uncharacterized protein 99.9 1.7E-25 5.9E-30 230.3 16.0 231 449-705 79-320 (328)
35 2z81_A CD282 antigen, TOLL-lik 99.9 5.8E-26 2E-30 252.6 12.6 172 531-709 312-496 (549)
36 3j0a_A TOLL-like receptor 5; m 99.9 3E-25 1E-29 258.5 17.1 290 388-703 12-379 (844)
37 3o6n_A APL1; leucine-rich repe 99.9 1.4E-25 4.7E-30 237.9 12.6 281 397-708 40-340 (390)
38 3oja_B Anopheles plasmodium-re 99.9 1.5E-25 5.1E-30 250.8 13.4 282 397-709 46-347 (597)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.9E-25 1E-29 247.1 15.6 120 380-505 52-177 (562)
40 1o6v_A Internalin A; bacterial 99.9 8.3E-25 2.8E-29 237.4 18.1 260 379-657 45-319 (466)
41 2z63_A TOLL-like receptor 4, v 99.9 1.4E-25 4.8E-30 250.8 12.2 113 375-489 47-164 (570)
42 1xku_A Decorin; proteoglycan, 99.9 3.4E-25 1.2E-29 229.2 13.7 274 402-709 31-318 (330)
43 4g8a_A TOLL-like receptor 4; l 99.9 8E-25 2.7E-29 248.1 17.2 144 549-706 443-588 (635)
44 2ft3_A Biglycan; proteoglycan, 99.9 3.6E-25 1.2E-29 229.1 11.3 273 402-709 33-319 (332)
45 3bz5_A Internalin-J, INLJ; leu 99.9 6.5E-25 2.2E-29 236.3 13.6 275 379-702 41-355 (457)
46 3bz5_A Internalin-J, INLJ; leu 99.9 3.9E-24 1.3E-28 230.2 19.5 305 376-706 60-395 (457)
47 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-24 4.3E-29 248.2 16.6 304 380-706 25-375 (680)
48 2z81_A CD282 antigen, TOLL-lik 99.9 3.4E-25 1.2E-29 246.3 11.3 177 380-566 26-211 (549)
49 1ziw_A TOLL-like receptor 3; i 99.9 1.6E-24 5.4E-29 247.4 16.3 310 375-707 267-605 (680)
50 2z66_A Variable lymphocyte rec 99.9 8.2E-25 2.8E-29 223.8 12.1 224 428-658 28-259 (306)
51 2z66_A Variable lymphocyte rec 99.9 2.1E-24 7.1E-29 220.8 13.1 226 402-637 28-262 (306)
52 2z80_A TOLL-like receptor 2, v 99.9 7.2E-24 2.5E-28 221.4 14.2 263 385-658 36-312 (353)
53 3zyj_A Leucine-rich repeat-con 99.9 1.7E-23 5.6E-28 225.4 17.0 221 428-658 64-290 (440)
54 3zyi_A Leucine-rich repeat-con 99.9 1.7E-23 5.7E-28 226.2 17.1 221 428-658 75-301 (452)
55 2z80_A TOLL-like receptor 2, v 99.9 1.8E-24 6.2E-29 225.9 7.4 254 428-703 52-318 (353)
56 1ozn_A Reticulon 4 receptor; N 99.9 3.9E-23 1.3E-27 209.0 15.9 219 431-658 14-236 (285)
57 3g06_A SSPH2 (leucine-rich rep 99.9 8.4E-23 2.9E-27 226.2 18.6 266 381-709 41-307 (622)
58 3zyi_A Leucine-rich repeat-con 99.9 4.1E-23 1.4E-27 223.2 14.3 244 429-699 55-303 (452)
59 4g8a_A TOLL-like receptor 4; l 99.9 4.4E-23 1.5E-27 233.7 14.7 314 378-709 50-565 (635)
60 3zyj_A Leucine-rich repeat-con 99.9 6.8E-23 2.3E-27 220.6 15.0 243 430-699 45-292 (440)
61 1jl5_A Outer protein YOPM; leu 99.9 8.5E-22 2.9E-26 211.8 20.2 179 380-589 91-271 (454)
62 1wwl_A Monocyte differentiatio 99.9 4.1E-24 1.4E-28 218.9 1.9 252 423-701 38-311 (312)
63 3o53_A Protein LRIM1, AGAP0063 99.9 1E-22 3.4E-27 209.0 12.1 222 418-659 24-249 (317)
64 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-23 7.1E-28 214.1 6.3 247 428-709 10-261 (317)
65 3oja_A Leucine-rich immune mol 99.9 2.8E-22 9.5E-27 217.8 13.8 215 425-659 31-249 (487)
66 3oja_A Leucine-rich immune mol 99.9 1.1E-22 3.9E-27 220.8 8.5 225 449-708 32-260 (487)
67 1p9a_G Platelet glycoprotein I 99.9 1.3E-21 4.4E-26 197.5 14.7 201 424-659 6-207 (290)
68 1jl5_A Outer protein YOPM; leu 99.9 2.5E-21 8.4E-26 208.2 17.4 275 380-700 131-410 (454)
69 1ozn_A Reticulon 4 receptor; N 99.9 9.2E-22 3.1E-26 198.8 12.8 204 427-638 31-240 (285)
70 2o6q_A Variable lymphocyte rec 99.9 3E-21 1E-25 193.2 15.3 197 429-657 17-215 (270)
71 1wwl_A Monocyte differentiatio 99.8 8E-23 2.7E-27 209.3 1.3 230 446-703 38-291 (312)
72 3g06_A SSPH2 (leucine-rich rep 99.8 3.6E-20 1.2E-24 205.1 21.4 234 380-658 61-295 (622)
73 3rfs_A Internalin B, repeat mo 99.8 1.1E-21 3.8E-26 196.5 7.8 223 429-683 20-244 (272)
74 2z62_A TOLL-like receptor 4, v 99.8 8.6E-21 2.9E-25 190.7 14.1 201 428-637 28-238 (276)
75 2z62_A TOLL-like receptor 4, v 99.8 8.4E-21 2.9E-25 190.8 13.9 216 432-658 11-235 (276)
76 2xwt_C Thyrotropin receptor; s 99.8 7.9E-21 2.7E-25 186.5 12.7 203 440-657 23-236 (239)
77 3rfs_A Internalin B, repeat mo 99.8 5E-21 1.7E-25 191.7 10.8 209 424-649 37-248 (272)
78 1h6u_A Internalin H; cell adhe 99.8 2.1E-20 7.1E-25 190.6 14.9 193 424-636 37-230 (308)
79 1z7x_W Ribonuclease inhibitor; 99.8 4.1E-23 1.4E-27 224.3 -8.0 318 379-701 27-413 (461)
80 2o6q_A Variable lymphocyte rec 99.8 2E-20 6.7E-25 187.2 10.0 201 452-700 17-219 (270)
81 1p9a_G Platelet glycoprotein I 99.8 7.4E-20 2.5E-24 184.6 13.0 200 400-636 8-208 (290)
82 2ca6_A RAN GTPase-activating p 99.8 2.5E-22 8.6E-27 212.4 -8.3 234 419-655 23-311 (386)
83 1z7x_W Ribonuclease inhibitor; 99.8 3.9E-22 1.3E-26 216.6 -7.7 308 380-706 3-361 (461)
84 1h6u_A Internalin H; cell adhe 99.8 1.2E-19 4E-24 185.0 10.0 204 432-657 23-227 (308)
85 2ast_B S-phase kinase-associat 99.8 3.8E-21 1.3E-25 199.4 -3.0 208 421-656 61-281 (336)
86 3m19_A Variable lymphocyte rec 99.8 9.9E-19 3.4E-23 172.8 13.6 178 428-637 14-193 (251)
87 2xwt_C Thyrotropin receptor; s 99.8 6.4E-19 2.2E-23 172.8 11.6 192 429-634 32-237 (239)
88 4glp_A Monocyte differentiatio 99.8 3.5E-19 1.2E-23 182.0 9.1 227 399-657 61-304 (310)
89 3m19_A Variable lymphocyte rec 99.8 1.3E-18 4.4E-23 172.0 12.1 177 451-659 14-191 (251)
90 2ca6_A RAN GTPase-activating p 99.8 3.2E-20 1.1E-24 196.3 -2.0 254 399-656 29-339 (386)
91 3goz_A Leucine-rich repeat-con 99.8 1.3E-19 4.3E-24 189.6 2.0 238 418-658 12-295 (362)
92 3cvr_A Invasion plasmid antige 99.7 1.7E-18 5.8E-23 189.3 10.7 187 429-647 60-254 (571)
93 4glp_A Monocyte differentiatio 99.7 1.1E-18 3.8E-23 178.3 6.9 225 452-700 65-308 (310)
94 4ay9_X Follicle-stimulating ho 99.7 2.5E-17 8.4E-22 171.3 14.9 216 428-656 30-255 (350)
95 4ay9_X Follicle-stimulating ho 99.7 4.8E-18 1.6E-22 176.7 9.3 222 431-703 12-241 (350)
96 1h6t_A Internalin B; cell adhe 99.7 1E-17 3.6E-22 169.0 11.5 170 424-611 42-212 (291)
97 2o6s_A Variable lymphocyte rec 99.7 1.2E-17 4.2E-22 159.8 9.8 175 431-622 10-188 (208)
98 2ast_B S-phase kinase-associat 99.7 1.9E-19 6.5E-24 186.6 -3.4 211 425-645 90-315 (336)
99 1m9s_A Internalin B; cell inva 99.7 1.3E-17 4.4E-22 184.5 10.6 172 424-613 39-211 (605)
100 3ogk_B Coronatine-insensitive 99.7 1.2E-19 4E-24 203.6 -6.0 321 379-699 111-501 (592)
101 3ogk_B Coronatine-insensitive 99.7 2.3E-19 7.8E-24 201.3 -4.0 301 379-701 163-528 (592)
102 1h6t_A Internalin B; cell adhe 99.7 7.2E-18 2.5E-22 170.2 7.4 190 428-637 24-214 (291)
103 3cvr_A Invasion plasmid antige 99.7 1E-17 3.6E-22 183.0 8.9 173 452-657 60-240 (571)
104 3goz_A Leucine-rich repeat-con 99.7 3.2E-19 1.1E-23 186.6 -4.9 259 432-701 2-299 (362)
105 1xeu_A Internalin C; cellular 99.7 1.2E-17 4.3E-22 165.7 6.5 170 426-614 17-187 (263)
106 1m9s_A Internalin B; cell inva 99.7 2.9E-17 1E-21 181.7 8.0 192 427-638 20-212 (605)
107 1dce_A Protein (RAB geranylger 99.7 1.8E-18 6.2E-23 190.2 -5.0 199 448-653 346-566 (567)
108 4ezg_A Putative uncharacterize 99.6 3.5E-16 1.2E-20 148.1 10.6 108 547-657 84-191 (197)
109 4ezg_A Putative uncharacterize 99.6 3.3E-16 1.1E-20 148.3 10.1 153 448-636 41-194 (197)
110 2v9t_B SLIT homolog 2 protein 99.6 5E-16 1.7E-20 149.7 11.0 147 431-610 14-163 (220)
111 2v70_A SLIT-2, SLIT homolog 2 99.6 3.3E-16 1.1E-20 150.9 9.8 148 431-610 14-164 (220)
112 2o6s_A Variable lymphocyte rec 99.6 3.9E-16 1.3E-20 149.3 9.3 175 454-682 10-186 (208)
113 2v70_A SLIT-2, SLIT homolog 2 99.6 6.1E-16 2.1E-20 149.0 10.0 151 454-636 14-166 (220)
114 2v9t_B SLIT homolog 2 protein 99.6 7.1E-16 2.4E-20 148.6 9.7 150 454-635 14-164 (220)
115 2xot_A Amphoterin-induced prot 99.6 2.9E-16 9.8E-21 163.9 7.3 174 431-636 21-202 (361)
116 2qen_A Walker-type ATPase; unk 99.6 8.6E-15 2.9E-19 152.4 18.4 296 20-359 10-349 (350)
117 2p1m_B Transport inhibitor res 99.6 3.7E-18 1.3E-22 191.5 -8.9 298 379-699 155-519 (594)
118 2p1m_B Transport inhibitor res 99.6 1.4E-17 4.8E-22 186.8 -5.6 322 378-700 103-495 (594)
119 1w5s_A Origin recognition comp 99.6 9.1E-15 3.1E-19 155.9 16.2 298 18-339 18-373 (412)
120 3e6j_A Variable lymphocyte rec 99.6 2.3E-15 7.7E-20 146.1 10.2 152 453-638 21-174 (229)
121 3e6j_A Variable lymphocyte rec 99.6 6.4E-15 2.2E-19 142.9 13.1 149 430-588 21-172 (229)
122 2xot_A Amphoterin-induced prot 99.6 8.8E-16 3E-20 160.2 7.4 174 499-699 20-202 (361)
123 1xeu_A Internalin C; cellular 99.6 2.5E-15 8.6E-20 149.0 10.0 151 423-590 36-187 (263)
124 1dce_A Protein (RAB geranylger 99.6 9.2E-18 3.1E-22 184.6 -10.0 194 425-630 346-567 (567)
125 4b8c_D Glucose-repressible alc 99.6 7.6E-16 2.6E-20 174.8 4.1 181 419-636 215-404 (727)
126 2fna_A Conserved hypothetical 99.6 6.1E-14 2.1E-18 146.3 18.4 297 20-358 11-356 (357)
127 4b8c_D Glucose-repressible alc 99.5 1.7E-15 5.9E-20 171.9 1.0 163 433-633 206-369 (727)
128 2qby_B CDC6 homolog 3, cell di 99.5 1.8E-12 6.2E-17 136.5 22.5 291 21-339 19-341 (384)
129 2ell_A Acidic leucine-rich nuc 99.5 4.3E-14 1.5E-18 130.0 8.3 134 426-589 22-161 (168)
130 3sb4_A Hypothetical leucine ri 99.5 6.5E-14 2.2E-18 144.1 9.9 261 379-654 48-328 (329)
131 1w8a_A SLIT protein; signaling 99.5 4.6E-14 1.6E-18 132.7 7.7 123 533-657 12-136 (192)
132 4fdw_A Leucine rich hypothetic 99.5 1.7E-12 5.8E-17 136.3 20.3 240 402-660 135-383 (401)
133 4fdw_A Leucine rich hypothetic 99.4 1E-12 3.5E-17 138.0 16.8 264 402-701 113-385 (401)
134 2wfh_A SLIT homolog 2 protein 99.4 2.9E-13 9.9E-18 127.2 11.0 125 431-587 13-138 (193)
135 2ell_A Acidic leucine-rich nuc 99.4 3E-14 1E-18 131.0 4.0 126 529-656 24-156 (168)
136 1w8a_A SLIT protein; signaling 99.4 1.9E-13 6.5E-18 128.5 9.5 90 548-637 51-140 (192)
137 2je0_A Acidic leucine-rich nuc 99.4 6.8E-14 2.3E-18 125.7 5.5 128 426-583 15-148 (149)
138 3sb4_A Hypothetical leucine ri 99.4 1.7E-14 5.9E-19 148.4 1.5 98 401-505 24-132 (329)
139 2v1u_A Cell division control p 99.4 4E-12 1.4E-16 134.1 19.1 298 18-339 15-353 (387)
140 1fnn_A CDC6P, cell division co 99.4 3.2E-11 1.1E-15 127.2 24.7 294 18-339 13-353 (389)
141 1a9n_A U2A', U2A'; complex (nu 99.4 2.1E-13 7.1E-18 126.3 6.9 130 424-586 15-151 (176)
142 2wfh_A SLIT homolog 2 protein 99.4 3E-13 1E-17 127.0 7.9 123 533-658 14-137 (193)
143 2je0_A Acidic leucine-rich nuc 99.4 2.6E-14 8.9E-19 128.5 0.1 126 528-655 16-148 (149)
144 2o6r_A Variable lymphocyte rec 99.4 6.3E-13 2.2E-17 123.2 8.0 125 532-658 10-135 (177)
145 2qby_A CDC6 homolog 1, cell di 99.4 1E-11 3.5E-16 130.9 17.8 296 18-339 16-350 (386)
146 1ds9_A Outer arm dynein; leuci 99.3 2.8E-14 9.7E-19 135.0 -4.2 113 442-565 39-154 (198)
147 2o6r_A Variable lymphocyte rec 99.3 1.9E-12 6.6E-17 119.9 8.0 65 547-611 72-136 (177)
148 1ds9_A Outer arm dynein; leuci 99.3 2.2E-14 7.4E-19 135.8 -5.4 133 463-629 37-180 (198)
149 1a9n_A U2A', U2A'; complex (nu 99.3 3.1E-13 1.1E-17 125.1 2.3 126 530-659 20-152 (176)
150 1njg_A DNA polymerase III subu 99.2 4.6E-11 1.6E-15 117.1 11.2 194 21-231 22-229 (250)
151 3g39_A Variable lymphocyte rec 99.2 1.5E-11 5.1E-16 112.8 5.9 106 531-638 11-117 (170)
152 2chg_A Replication factor C sm 99.2 1.2E-10 4.2E-15 112.2 12.2 176 21-226 16-200 (226)
153 2r9u_A Variable lymphocyte rec 99.2 2.5E-11 8.6E-16 111.7 6.2 104 532-637 15-119 (174)
154 3g39_A Variable lymphocyte rec 99.1 9.7E-11 3.3E-15 107.4 5.8 105 552-659 10-114 (170)
155 2r9u_A Variable lymphocyte rec 99.0 1.5E-10 5.3E-15 106.4 6.3 104 553-659 14-117 (174)
156 4fs7_A Uncharacterized protein 99.0 2.7E-09 9.4E-14 112.3 13.4 265 369-655 60-351 (394)
157 1sxj_B Activator 1 37 kDa subu 98.9 1.3E-09 4.3E-14 111.7 8.7 181 21-231 20-211 (323)
158 4fs7_A Uncharacterized protein 98.9 1.3E-09 4.3E-14 114.9 8.4 238 398-655 67-328 (394)
159 3un9_A NLR family member X1; l 98.9 2.2E-11 7.6E-16 126.5 -5.5 61 427-487 71-139 (372)
160 3un9_A NLR family member X1; l 98.9 2.1E-10 7.3E-15 119.1 -0.9 109 402-511 72-196 (372)
161 2ifg_A High affinity nerve gro 98.8 2E-09 6.9E-14 111.3 5.6 95 540-636 21-116 (347)
162 3te6_A Regulatory protein SIR3 98.8 1.3E-08 4.6E-13 101.4 11.0 167 24-196 22-212 (318)
163 1hqc_A RUVB; extended AAA-ATPa 98.8 8.3E-08 2.8E-12 98.1 15.8 172 21-232 11-213 (324)
164 1iqp_A RFCS; clamp loader, ext 98.8 1.3E-08 4.4E-13 104.3 9.1 178 21-228 24-210 (327)
165 2ifg_A High affinity nerve gro 98.8 4.8E-09 1.7E-13 108.5 5.8 102 554-658 11-114 (347)
166 4gt6_A Cell surface protein; l 98.7 3.1E-08 1.1E-12 104.2 10.9 99 403-505 65-168 (394)
167 4gt6_A Cell surface protein; l 98.7 1.7E-07 5.9E-12 98.5 15.2 285 368-659 51-369 (394)
168 1jr3_A DNA polymerase III subu 98.7 6.1E-08 2.1E-12 101.2 10.8 195 21-229 15-220 (373)
169 2ra8_A Uncharacterized protein 98.6 8.3E-09 2.8E-13 106.1 2.0 61 597-657 250-317 (362)
170 2chq_A Replication factor C sm 98.6 1.2E-07 4.2E-12 96.5 10.1 173 21-226 16-200 (319)
171 3bos_A Putative DNA replicatio 98.6 6.9E-08 2.4E-12 94.0 6.9 165 21-227 27-214 (242)
172 3pfi_A Holliday junction ATP-d 98.5 2.5E-06 8.7E-11 87.5 18.6 167 20-227 27-224 (338)
173 2z4s_A Chromosomal replication 98.5 2.5E-07 8.6E-12 98.1 11.1 182 38-251 130-333 (440)
174 1jbk_A CLPB protein; beta barr 98.5 3.3E-08 1.1E-12 92.5 3.9 42 20-61 20-66 (195)
175 3h4m_A Proteasome-activating n 98.5 4.3E-07 1.5E-11 90.8 11.7 174 20-226 15-227 (285)
176 4h09_A Hypothetical leucine ri 98.5 6.8E-07 2.3E-11 93.4 13.6 126 527-655 215-341 (379)
177 3uk6_A RUVB-like 2; hexameric 98.5 1.4E-06 4.7E-11 90.7 15.5 195 21-226 43-299 (368)
178 2ra8_A Uncharacterized protein 98.5 4.8E-08 1.6E-12 100.5 4.2 165 423-613 134-321 (362)
179 2qz4_A Paraplegin; AAA+, SPG7, 98.5 3.2E-06 1.1E-10 83.2 16.8 173 21-224 5-215 (262)
180 3pvs_A Replication-associated 98.5 7.9E-07 2.7E-11 94.0 12.3 172 21-226 25-211 (447)
181 1xwi_A SKD1 protein; VPS4B, AA 98.4 2.7E-06 9.3E-11 86.2 14.9 180 21-231 11-224 (322)
182 1sxj_D Activator 1 41 kDa subu 98.4 1.9E-06 6.4E-11 89.1 13.2 187 21-226 36-231 (353)
183 3vfd_A Spastin; ATPase, microt 98.4 5E-06 1.7E-10 86.9 15.8 177 21-229 114-325 (389)
184 1sxj_A Activator 1 95 kDa subu 98.4 1E-06 3.5E-11 95.7 10.8 185 21-230 38-253 (516)
185 1sxj_E Activator 1 40 kDa subu 98.4 3.7E-07 1.3E-11 94.5 6.5 97 123-226 133-233 (354)
186 3d8b_A Fidgetin-like protein 1 98.4 8.3E-06 2.8E-10 84.0 16.6 178 21-231 83-296 (357)
187 1d2n_A N-ethylmaleimide-sensit 98.4 3.6E-06 1.2E-10 83.3 13.4 166 21-222 32-229 (272)
188 3eie_A Vacuolar protein sortin 98.3 3.1E-06 1.1E-10 86.0 11.7 178 21-230 17-228 (322)
189 2zan_A Vacuolar protein sortin 98.3 4.8E-06 1.6E-10 88.4 13.5 180 20-230 132-345 (444)
190 3b9p_A CG5977-PA, isoform A; A 98.3 5.1E-06 1.8E-10 83.4 12.6 176 21-229 20-232 (297)
191 1l8q_A Chromosomal replication 98.3 5.9E-06 2E-10 84.1 12.7 154 37-225 36-203 (324)
192 1io0_A Tropomodulin; LRR prote 98.2 1.6E-07 5.6E-12 86.9 0.8 87 418-504 26-128 (185)
193 4b4t_J 26S protease regulatory 98.2 3.2E-06 1.1E-10 86.4 10.1 169 22-223 148-354 (405)
194 1a5t_A Delta prime, HOLB; zinc 98.2 9E-06 3.1E-10 82.9 13.5 92 123-226 107-201 (334)
195 3syl_A Protein CBBX; photosynt 98.2 3.3E-06 1.1E-10 85.4 10.2 149 23-196 32-218 (309)
196 2qp9_X Vacuolar protein sortin 98.2 5.1E-06 1.7E-10 85.5 11.2 176 21-229 50-260 (355)
197 4b4t_L 26S protease subunit RP 98.2 6.8E-06 2.3E-10 85.5 11.0 169 22-223 181-387 (437)
198 3u61_B DNA polymerase accessor 98.2 4.8E-06 1.6E-10 84.8 9.7 169 21-225 25-211 (324)
199 4h09_A Hypothetical leucine ri 98.1 5.6E-05 1.9E-09 78.7 17.4 262 369-649 58-358 (379)
200 3cf0_A Transitional endoplasmi 98.1 1.1E-05 3.8E-10 80.9 11.4 172 21-225 14-223 (301)
201 4b4t_H 26S protease regulatory 98.1 1.5E-05 5.2E-10 82.5 10.8 169 22-223 209-415 (467)
202 4b4t_M 26S protease regulatory 98.1 6.3E-06 2.2E-10 85.6 8.0 168 22-222 181-386 (434)
203 1sxj_C Activator 1 40 kDa subu 98.0 1.8E-05 6.3E-10 81.0 11.0 175 22-226 25-208 (340)
204 3e4g_A ATP synthase subunit S, 98.0 1.5E-06 5E-11 78.2 2.3 87 550-636 60-152 (176)
205 4b4t_I 26S protease regulatory 98.0 1.2E-05 4.2E-10 82.3 9.4 169 22-223 182-388 (437)
206 1lv7_A FTSH; alpha/beta domain 98.0 2.1E-05 7.3E-10 77.0 10.8 149 21-196 11-196 (257)
207 3n70_A Transport activator; si 98.0 4.3E-06 1.5E-10 73.8 5.2 105 23-161 2-115 (145)
208 1io0_A Tropomodulin; LRR prote 98.0 4.1E-06 1.4E-10 77.4 5.1 109 398-506 32-160 (185)
209 1qvr_A CLPB protein; coiled co 98.0 7.9E-06 2.7E-10 94.4 8.5 152 21-195 169-345 (854)
210 2p65_A Hypothetical protein PF 98.0 1.5E-06 5.2E-11 80.4 1.9 43 19-61 19-66 (187)
211 1in4_A RUVB, holliday junction 97.9 0.00039 1.3E-08 70.7 19.0 164 22-226 25-219 (334)
212 3rw6_A Nuclear RNA export fact 97.9 2E-06 6.7E-11 83.7 1.0 41 449-489 168-211 (267)
213 3hu3_A Transitional endoplasmi 97.9 2.3E-05 7.9E-10 83.6 8.9 173 22-227 204-412 (489)
214 2ce7_A Cell division protein F 97.9 7.7E-05 2.6E-09 78.9 12.4 197 22-251 16-257 (476)
215 4b4t_K 26S protease regulatory 97.9 2.8E-05 9.5E-10 80.8 8.7 169 22-223 172-379 (428)
216 3pxg_A Negative regulator of g 97.9 9.9E-06 3.4E-10 86.5 5.4 41 21-61 179-224 (468)
217 3ec2_A DNA replication protein 97.9 2.1E-05 7.3E-10 72.2 7.0 103 36-162 36-143 (180)
218 3rw6_A Nuclear RNA export fact 97.9 9.7E-06 3.3E-10 78.8 4.7 81 423-504 165-258 (267)
219 3cf2_A TER ATPase, transitiona 97.8 5.3E-05 1.8E-09 84.9 11.0 169 22-223 204-407 (806)
220 2gno_A DNA polymerase III, gam 97.8 6.6E-05 2.3E-09 74.9 10.4 134 35-195 15-152 (305)
221 3e4g_A ATP synthase subunit S, 97.8 2.6E-06 9.1E-11 76.6 -0.0 84 575-658 61-150 (176)
222 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00013 4.5E-09 83.3 11.9 153 21-195 185-362 (758)
223 4fcw_A Chaperone protein CLPB; 97.7 4.6E-05 1.6E-09 77.0 6.8 56 22-79 17-86 (311)
224 3co5_A Putative two-component 97.7 3E-05 1E-09 68.1 4.5 39 23-61 5-50 (143)
225 2bjv_A PSP operon transcriptio 97.7 0.00014 4.8E-09 71.4 9.7 56 22-79 6-68 (265)
226 2r62_A Cell division protease 97.6 1.7E-05 5.7E-10 78.3 2.7 42 20-61 9-67 (268)
227 2w58_A DNAI, primosome compone 97.6 2.5E-05 8.7E-10 73.3 3.7 36 39-76 55-90 (202)
228 2kjq_A DNAA-related protein; s 97.6 0.00011 3.7E-09 64.9 6.4 40 37-78 35-74 (149)
229 3pxi_A Negative regulator of g 97.5 5.6E-05 1.9E-09 86.3 5.4 41 21-61 179-224 (758)
230 1ofh_A ATP-dependent HSL prote 97.5 0.00026 8.8E-09 71.3 9.8 41 21-61 14-73 (310)
231 1ixz_A ATP-dependent metallopr 97.5 0.00019 6.6E-09 69.9 8.3 151 40-223 51-221 (254)
232 1ojl_A Transcriptional regulat 97.5 0.00032 1.1E-08 70.2 9.8 56 22-79 2-64 (304)
233 3t15_A Ribulose bisphosphate c 97.4 0.00086 2.9E-08 66.7 12.1 26 36-61 34-59 (293)
234 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00068 2.3E-08 72.1 11.7 197 18-251 27-272 (499)
235 1iy2_A ATP-dependent metallopr 97.4 0.00036 1.2E-08 69.0 8.8 172 19-223 37-245 (278)
236 2x8a_A Nuclear valosin-contain 97.3 0.0012 4.2E-08 64.8 11.8 129 40-196 46-192 (274)
237 2c9o_A RUVB-like 1; hexameric 97.3 0.0018 6.1E-08 68.9 13.8 92 126-225 297-405 (456)
238 3pxi_A Negative regulator of g 97.3 0.00033 1.1E-08 79.8 8.4 146 22-195 491-675 (758)
239 2cvh_A DNA repair and recombin 97.2 0.0011 3.8E-08 62.8 8.9 92 37-136 19-117 (220)
240 3m6a_A ATP-dependent protease 97.1 0.00047 1.6E-08 74.9 6.5 39 23-61 82-131 (543)
241 1g5t_A COB(I)alamin adenosyltr 97.0 0.0011 3.6E-08 60.5 7.0 123 37-162 27-163 (196)
242 1ypw_A Transitional endoplasmi 97.0 0.0011 3.8E-08 75.5 8.9 149 21-196 203-386 (806)
243 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00052 1.8E-08 67.6 5.2 70 38-136 123-194 (331)
244 3cf2_A TER ATPase, transitiona 96.9 0.00033 1.1E-08 78.5 3.1 131 38-195 511-661 (806)
245 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00057 1.9E-08 62.6 3.5 87 419-505 32-134 (197)
246 2r44_A Uncharacterized protein 96.8 0.0016 5.5E-08 66.1 7.1 41 21-61 26-69 (331)
247 3hr8_A Protein RECA; alpha and 96.7 0.0026 9E-08 64.4 7.6 90 38-136 61-151 (356)
248 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0062 2.1E-07 69.4 10.7 53 21-78 457-523 (758)
249 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0038 1.3E-07 59.6 7.5 39 38-78 23-61 (235)
250 1jr3_D DNA polymerase III, del 96.6 0.018 6.2E-07 58.6 13.0 156 36-227 16-182 (343)
251 1qvr_A CLPB protein; coiled co 96.6 0.0056 1.9E-07 70.6 9.9 56 22-79 558-627 (854)
252 2b8t_A Thymidine kinase; deoxy 96.5 0.00095 3.3E-08 62.8 2.3 115 36-163 10-127 (223)
253 1xp8_A RECA protein, recombina 96.4 0.005 1.7E-07 62.8 7.6 89 38-135 74-163 (366)
254 1n0w_A DNA repair protein RAD5 96.4 0.0046 1.6E-07 59.4 6.9 47 37-83 23-73 (243)
255 1u94_A RECA protein, recombina 96.4 0.0043 1.5E-07 63.1 6.4 90 37-135 62-152 (356)
256 2qgz_A Helicase loader, putati 96.3 0.0032 1.1E-07 62.9 5.1 38 38-76 152-189 (308)
257 3rfe_A Platelet glycoprotein I 96.2 0.0059 2E-07 52.1 5.8 54 431-486 11-67 (130)
258 2zr9_A Protein RECA, recombina 96.2 0.0067 2.3E-07 61.6 7.2 90 37-135 60-150 (349)
259 3dm5_A SRP54, signal recogniti 96.2 0.037 1.2E-06 57.5 12.6 39 36-76 98-136 (443)
260 2z43_A DNA repair and recombin 96.1 0.0082 2.8E-07 60.5 7.2 55 38-93 107-165 (324)
261 3io5_A Recombination and repai 96.1 0.0094 3.2E-07 58.5 7.2 90 40-136 30-123 (333)
262 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0047 1.6E-07 56.5 4.5 107 400-506 39-166 (197)
263 2orw_A Thymidine kinase; TMTK, 95.9 0.0009 3.1E-08 61.3 -1.0 24 38-61 3-26 (184)
264 1vma_A Cell division protein F 95.9 0.015 5.1E-07 57.7 7.7 94 36-135 102-197 (306)
265 1v5w_A DMC1, meiotic recombina 95.9 0.018 6.1E-07 58.5 8.4 49 37-85 121-173 (343)
266 3bh0_A DNAB-like replicative h 95.8 0.022 7.6E-07 57.0 8.6 53 36-92 66-118 (315)
267 1qhx_A CPT, protein (chloramph 95.8 0.0049 1.7E-07 56.0 3.4 24 38-61 3-26 (178)
268 3ice_A Transcription terminati 95.8 0.0044 1.5E-07 62.4 3.1 44 35-79 171-215 (422)
269 2i1q_A DNA repair and recombin 95.7 0.017 5.6E-07 58.2 7.0 55 38-93 98-166 (322)
270 3kl4_A SRP54, signal recogniti 95.6 0.025 8.4E-07 58.8 8.2 41 36-78 95-135 (433)
271 2dr3_A UPF0273 protein PH0284; 95.6 0.027 9.4E-07 54.0 8.2 39 38-78 23-61 (247)
272 1zp6_A Hypothetical protein AT 95.6 0.0071 2.4E-07 55.6 3.8 25 37-61 8-32 (191)
273 1kgd_A CASK, peripheral plasma 95.6 0.0068 2.3E-07 55.2 3.4 24 38-61 5-28 (180)
274 3kb2_A SPBC2 prophage-derived 95.5 0.0064 2.2E-07 54.8 3.2 23 39-61 2-24 (173)
275 3uie_A Adenylyl-sulfate kinase 95.5 0.0062 2.1E-07 56.6 3.1 27 35-61 22-48 (200)
276 1ly1_A Polynucleotide kinase; 95.5 0.008 2.7E-07 54.6 3.6 23 38-60 2-24 (181)
277 1ex7_A Guanylate kinase; subst 95.5 0.0034 1.2E-07 57.2 1.0 23 39-61 2-24 (186)
278 3jvv_A Twitching mobility prot 95.5 0.0084 2.9E-07 60.9 4.0 114 35-165 120-234 (356)
279 1sky_E F1-ATPase, F1-ATP synth 95.5 0.025 8.5E-07 59.0 7.5 41 39-80 152-192 (473)
280 2ffh_A Protein (FFH); SRP54, s 95.4 0.025 8.4E-07 58.7 7.5 39 37-77 97-135 (425)
281 3tau_A Guanylate kinase, GMP k 95.4 0.0083 2.8E-07 56.1 3.6 26 36-61 6-31 (208)
282 3lw7_A Adenylate kinase relate 95.4 0.0075 2.6E-07 54.5 3.1 20 39-58 2-21 (179)
283 1j8m_F SRP54, signal recogniti 95.4 0.035 1.2E-06 54.9 8.0 92 38-135 98-191 (297)
284 2ck3_D ATP synthase subunit be 95.4 0.035 1.2E-06 57.7 8.2 45 35-80 150-194 (482)
285 3vaa_A Shikimate kinase, SK; s 95.4 0.0087 3E-07 55.5 3.4 25 37-61 24-48 (199)
286 4a74_A DNA repair and recombin 95.3 0.032 1.1E-06 52.9 7.5 43 37-79 24-70 (231)
287 3trf_A Shikimate kinase, SK; a 95.3 0.0091 3.1E-07 54.6 3.2 24 38-61 5-28 (185)
288 2px0_A Flagellar biosynthesis 95.3 0.027 9.2E-07 55.6 6.8 41 37-78 104-144 (296)
289 1kag_A SKI, shikimate kinase I 95.3 0.0076 2.6E-07 54.4 2.6 24 38-61 4-27 (173)
290 2xxa_A Signal recognition part 95.2 0.041 1.4E-06 57.4 8.4 43 36-79 98-140 (433)
291 3a00_A Guanylate kinase, GMP k 95.2 0.0084 2.9E-07 54.9 2.7 23 39-61 2-24 (186)
292 3zvl_A Bifunctional polynucleo 95.2 0.037 1.3E-06 57.8 7.8 27 35-61 255-281 (416)
293 3tr0_A Guanylate kinase, GMP k 95.1 0.011 3.9E-07 54.9 3.6 24 38-61 7-30 (205)
294 3ney_A 55 kDa erythrocyte memb 95.1 0.012 4E-07 54.0 3.5 25 37-61 18-42 (197)
295 2rhm_A Putative kinase; P-loop 95.1 0.012 4E-07 54.2 3.5 25 37-61 4-28 (193)
296 3c8u_A Fructokinase; YP_612366 95.1 0.012 4E-07 55.0 3.5 26 36-61 20-45 (208)
297 3lda_A DNA repair protein RAD5 95.1 0.032 1.1E-06 57.6 6.9 56 38-94 178-237 (400)
298 4eun_A Thermoresistant glucoki 95.1 0.012 4.1E-07 54.6 3.4 25 37-61 28-52 (200)
299 2qor_A Guanylate kinase; phosp 95.0 0.011 3.6E-07 55.2 3.0 25 37-61 11-35 (204)
300 3rfe_A Platelet glycoprotein I 95.0 0.015 5E-07 49.6 3.6 35 552-586 32-66 (130)
301 4gp7_A Metallophosphoesterase; 95.0 0.012 4.1E-07 53.0 3.2 23 37-59 8-30 (171)
302 3t61_A Gluconokinase; PSI-biol 95.0 0.011 3.8E-07 54.9 3.1 24 38-61 18-41 (202)
303 3nbx_X ATPase RAVA; AAA+ ATPas 95.0 0.0066 2.2E-07 64.6 1.5 40 22-61 22-64 (500)
304 3e70_C DPA, signal recognition 95.0 0.049 1.7E-06 54.5 7.8 57 36-94 127-184 (328)
305 1knq_A Gluconate kinase; ALFA/ 95.0 0.015 5.3E-07 52.4 3.8 24 38-61 8-31 (175)
306 1rz3_A Hypothetical protein rb 95.0 0.011 3.8E-07 54.8 2.9 26 36-61 20-45 (201)
307 1ls1_A Signal recognition part 95.0 0.042 1.4E-06 54.3 7.2 40 37-78 97-136 (295)
308 1fx0_B ATP synthase beta chain 95.0 0.047 1.6E-06 57.0 7.7 55 35-90 162-217 (498)
309 1kht_A Adenylate kinase; phosp 94.9 0.013 4.4E-07 53.8 3.2 23 39-61 4-26 (192)
310 2j41_A Guanylate kinase; GMP, 94.9 0.015 5E-07 54.2 3.6 24 38-61 6-29 (207)
311 1ypw_A Transitional endoplasmi 94.9 0.0022 7.4E-08 73.1 -2.6 24 38-61 511-534 (806)
312 3iij_A Coilin-interacting nucl 94.9 0.012 4.1E-07 53.5 2.9 24 38-61 11-34 (180)
313 1nks_A Adenylate kinase; therm 94.9 0.013 4.3E-07 53.9 3.1 23 39-61 2-24 (194)
314 1y63_A LMAJ004144AAA protein; 94.9 0.016 5.6E-07 52.8 3.7 24 38-61 10-33 (184)
315 1lvg_A Guanylate kinase, GMP k 94.8 0.012 3.9E-07 54.6 2.6 24 38-61 4-27 (198)
316 2bdt_A BH3686; alpha-beta prot 94.8 0.015 5.1E-07 53.3 3.4 22 39-60 3-24 (189)
317 2ze6_A Isopentenyl transferase 94.8 0.015 5E-07 56.2 3.3 23 39-61 2-24 (253)
318 2jeo_A Uridine-cytidine kinase 94.8 0.017 5.9E-07 55.5 3.8 36 26-61 10-48 (245)
319 1ye8_A Protein THEP1, hypothet 94.8 0.016 5.3E-07 52.6 3.2 22 40-61 2-23 (178)
320 2yvu_A Probable adenylyl-sulfa 94.8 0.018 6E-07 52.7 3.7 26 37-62 12-37 (186)
321 1ukz_A Uridylate kinase; trans 94.7 0.019 6.4E-07 53.4 3.8 26 36-61 13-38 (203)
322 3asz_A Uridine kinase; cytidin 94.7 0.016 5.6E-07 54.2 3.4 25 37-61 5-29 (211)
323 1s96_A Guanylate kinase, GMP k 94.7 0.017 5.7E-07 54.3 3.4 26 36-61 14-39 (219)
324 1tev_A UMP-CMP kinase; ploop, 94.7 0.017 5.8E-07 53.1 3.5 24 38-61 3-26 (196)
325 2qt1_A Nicotinamide riboside k 94.7 0.019 6.5E-07 53.5 3.8 24 38-61 21-44 (207)
326 1via_A Shikimate kinase; struc 94.7 0.014 4.7E-07 52.8 2.6 22 40-61 6-27 (175)
327 2c95_A Adenylate kinase 1; tra 94.7 0.017 5.9E-07 53.2 3.4 25 37-61 8-32 (196)
328 3fwy_A Light-independent proto 94.7 0.019 6.5E-07 57.2 3.8 42 36-79 46-87 (314)
329 2bbw_A Adenylate kinase 4, AK4 94.7 0.017 5.9E-07 55.5 3.4 24 37-60 26-49 (246)
330 3umf_A Adenylate kinase; rossm 94.6 0.021 7.2E-07 53.3 3.8 38 24-61 14-52 (217)
331 2z0h_A DTMP kinase, thymidylat 94.6 0.027 9.3E-07 51.9 4.6 22 40-61 2-23 (197)
332 1htw_A HI0065; nucleotide-bind 94.6 0.022 7.6E-07 50.3 3.7 26 36-61 31-56 (158)
333 1z6g_A Guanylate kinase; struc 94.6 0.016 5.4E-07 54.6 2.9 26 36-61 21-46 (218)
334 1jjv_A Dephospho-COA kinase; P 94.6 0.019 6.6E-07 53.4 3.5 22 39-60 3-24 (206)
335 1zuh_A Shikimate kinase; alpha 94.6 0.019 6.4E-07 51.5 3.2 23 39-61 8-30 (168)
336 1znw_A Guanylate kinase, GMP k 94.5 0.02 6.8E-07 53.4 3.5 24 38-61 20-43 (207)
337 2cdn_A Adenylate kinase; phosp 94.5 0.021 7.4E-07 52.9 3.7 25 37-61 19-43 (201)
338 4akg_A Glutathione S-transfera 94.5 0.46 1.6E-05 60.5 16.5 140 37-195 1266-1431(2695)
339 3vr4_D V-type sodium ATPase su 94.5 0.025 8.7E-07 58.3 4.4 49 39-89 152-205 (465)
340 2plr_A DTMP kinase, probable t 94.5 0.021 7.2E-07 53.3 3.6 24 38-61 4-27 (213)
341 1gvn_B Zeta; postsegregational 94.5 0.02 7E-07 56.3 3.6 26 36-61 31-56 (287)
342 4a1f_A DNAB helicase, replicat 94.5 0.045 1.5E-06 54.9 6.0 53 37-93 45-97 (338)
343 1odf_A YGR205W, hypothetical 3 94.5 0.023 7.8E-07 56.0 3.8 27 36-62 29-55 (290)
344 1uf9_A TT1252 protein; P-loop, 94.5 0.018 6.2E-07 53.4 3.0 27 35-61 5-31 (203)
345 3cm0_A Adenylate kinase; ATP-b 94.5 0.021 7E-07 52.2 3.3 24 38-61 4-27 (186)
346 1e6c_A Shikimate kinase; phosp 94.4 0.017 5.8E-07 52.0 2.6 23 39-61 3-25 (173)
347 1tue_A Replication protein E1; 94.4 0.014 4.9E-07 53.3 2.0 25 37-61 57-81 (212)
348 2bwj_A Adenylate kinase 5; pho 94.4 0.02 6.8E-07 52.9 3.1 24 38-61 12-35 (199)
349 2jaq_A Deoxyguanosine kinase; 94.4 0.02 6.9E-07 53.1 3.2 22 40-61 2-23 (205)
350 3cmu_A Protein RECA, recombina 94.4 0.036 1.2E-06 67.9 6.0 89 37-134 1426-1515(2050)
351 2iyv_A Shikimate kinase, SK; t 94.4 0.016 5.6E-07 52.8 2.4 23 39-61 3-25 (184)
352 1xjc_A MOBB protein homolog; s 94.3 0.025 8.6E-07 50.3 3.4 25 37-61 3-27 (169)
353 2vli_A Antibiotic resistance p 94.3 0.017 5.8E-07 52.6 2.4 24 38-61 5-28 (183)
354 3hjn_A DTMP kinase, thymidylat 94.3 0.037 1.3E-06 51.0 4.7 35 40-76 2-36 (197)
355 2if2_A Dephospho-COA kinase; a 94.3 0.02 7E-07 53.1 3.0 22 39-60 2-23 (204)
356 1uj2_A Uridine-cytidine kinase 94.3 0.024 8.3E-07 54.7 3.6 26 36-61 20-45 (252)
357 1qf9_A UMP/CMP kinase, protein 94.3 0.025 8.7E-07 51.8 3.6 24 38-61 6-29 (194)
358 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.024 8.3E-07 55.0 3.6 24 38-61 4-27 (260)
359 1cke_A CK, MSSA, protein (cyti 94.3 0.022 7.5E-07 54.0 3.2 24 38-61 5-28 (227)
360 3aez_A Pantothenate kinase; tr 94.3 0.025 8.5E-07 56.3 3.7 26 36-61 88-113 (312)
361 2qmh_A HPR kinase/phosphorylas 94.3 0.026 8.9E-07 51.2 3.4 25 37-61 33-57 (205)
362 2v54_A DTMP kinase, thymidylat 94.2 0.023 7.7E-07 52.8 3.1 24 38-61 4-27 (204)
363 3oaa_A ATP synthase subunit al 94.2 0.08 2.8E-06 55.1 7.4 95 35-136 159-266 (513)
364 3a8t_A Adenylate isopentenyltr 94.2 0.029 1E-06 55.8 4.0 25 37-61 39-63 (339)
365 1g8p_A Magnesium-chelatase 38 94.2 0.0093 3.2E-07 60.9 0.4 40 22-61 24-68 (350)
366 2pt5_A Shikimate kinase, SK; a 94.2 0.024 8.3E-07 50.7 3.2 22 40-61 2-23 (168)
367 3llm_A ATP-dependent RNA helic 94.2 0.14 4.8E-06 48.6 8.8 22 38-59 76-97 (235)
368 3bgw_A DNAB-like replicative h 94.2 0.12 4.2E-06 54.1 9.0 51 37-91 196-246 (444)
369 1nn5_A Similar to deoxythymidy 94.2 0.026 8.7E-07 52.9 3.4 24 38-61 9-32 (215)
370 2wwf_A Thymidilate kinase, put 94.2 0.025 8.5E-07 52.9 3.3 24 38-61 10-33 (212)
371 2grj_A Dephospho-COA kinase; T 94.1 0.026 8.9E-07 51.7 3.1 25 37-61 11-35 (192)
372 2pbr_A DTMP kinase, thymidylat 94.1 0.026 9E-07 51.8 3.2 22 40-61 2-23 (195)
373 1aky_A Adenylate kinase; ATP:A 94.1 0.028 9.6E-07 52.9 3.4 25 37-61 3-27 (220)
374 1rj9_A FTSY, signal recognitio 94.1 0.03 1E-06 55.5 3.7 25 37-61 101-125 (304)
375 4e22_A Cytidylate kinase; P-lo 94.0 0.03 1E-06 54.0 3.6 26 36-61 25-50 (252)
376 2j37_W Signal recognition part 94.0 0.13 4.5E-06 54.5 8.8 41 36-78 99-139 (504)
377 2r8r_A Sensor protein; KDPD, P 94.0 0.053 1.8E-06 50.5 5.0 39 39-79 7-45 (228)
378 3fb4_A Adenylate kinase; psych 94.0 0.028 9.5E-07 52.8 3.2 22 40-61 2-23 (216)
379 3exa_A TRNA delta(2)-isopenten 94.0 0.027 9.2E-07 55.3 3.1 24 38-61 3-26 (322)
380 3tlx_A Adenylate kinase 2; str 94.0 0.033 1.1E-06 53.4 3.7 26 36-61 27-52 (243)
381 3tqc_A Pantothenate kinase; bi 93.9 0.033 1.1E-06 55.4 3.8 25 37-61 91-115 (321)
382 1zd8_A GTP:AMP phosphotransfer 93.9 0.027 9.4E-07 53.3 3.1 24 38-61 7-30 (227)
383 3l0o_A Transcription terminati 93.9 0.1 3.6E-06 52.4 7.2 44 35-79 172-216 (427)
384 2pez_A Bifunctional 3'-phospho 93.9 0.034 1.2E-06 50.3 3.6 24 38-61 5-28 (179)
385 3dl0_A Adenylate kinase; phosp 93.9 0.029 1E-06 52.6 3.2 22 40-61 2-23 (216)
386 2f6r_A COA synthase, bifunctio 93.9 0.032 1.1E-06 54.8 3.5 24 36-59 73-96 (281)
387 2r9v_A ATP synthase subunit al 93.9 0.092 3.2E-06 54.9 7.0 41 36-80 173-215 (515)
388 3lnc_A Guanylate kinase, GMP k 93.8 0.02 6.9E-07 54.4 1.9 24 38-61 27-51 (231)
389 2q6t_A DNAB replication FORK h 93.8 0.28 9.4E-06 51.6 10.8 54 37-93 199-252 (444)
390 1zak_A Adenylate kinase; ATP:A 93.7 0.029 9.9E-07 52.9 2.8 24 38-61 5-28 (222)
391 1zu4_A FTSY; GTPase, signal re 93.7 0.037 1.3E-06 55.3 3.7 40 36-77 103-142 (320)
392 1m7g_A Adenylylsulfate kinase; 93.7 0.04 1.4E-06 51.5 3.7 27 35-61 22-48 (211)
393 1a7j_A Phosphoribulokinase; tr 93.7 0.022 7.6E-07 56.1 2.0 25 37-61 4-28 (290)
394 3tif_A Uncharacterized ABC tra 93.7 0.039 1.3E-06 52.5 3.6 27 35-61 28-54 (235)
395 2ehv_A Hypothetical protein PH 93.7 0.032 1.1E-06 53.7 3.1 40 37-77 29-68 (251)
396 3d3q_A TRNA delta(2)-isopenten 93.6 0.036 1.2E-06 55.4 3.4 23 39-61 8-30 (340)
397 1vht_A Dephospho-COA kinase; s 93.6 0.041 1.4E-06 51.7 3.7 23 38-60 4-26 (218)
398 2onk_A Molybdate/tungstate ABC 93.6 0.039 1.3E-06 52.6 3.5 26 35-61 22-47 (240)
399 2yhs_A FTSY, cell division pro 93.6 0.16 5.4E-06 53.3 8.3 26 36-61 291-316 (503)
400 2ck3_A ATP synthase subunit al 93.6 0.095 3.2E-06 54.9 6.5 47 35-81 159-211 (510)
401 3foz_A TRNA delta(2)-isopenten 93.5 0.045 1.5E-06 53.6 3.8 25 37-61 9-33 (316)
402 2qe7_A ATP synthase subunit al 93.5 0.11 3.7E-06 54.3 6.7 42 35-80 159-202 (502)
403 2p5t_B PEZT; postsegregational 93.5 0.031 1.1E-06 54.0 2.6 26 36-61 30-55 (253)
404 4eaq_A DTMP kinase, thymidylat 93.4 0.054 1.8E-06 51.3 4.2 26 37-62 25-50 (229)
405 4edh_A DTMP kinase, thymidylat 93.4 0.083 2.8E-06 49.2 5.3 25 38-62 6-30 (213)
406 3crm_A TRNA delta(2)-isopenten 93.4 0.046 1.6E-06 54.2 3.7 24 38-61 5-28 (323)
407 1cr0_A DNA primase/helicase; R 93.4 0.081 2.8E-06 52.4 5.6 42 35-77 32-73 (296)
408 3b9q_A Chloroplast SRP recepto 93.4 0.046 1.6E-06 54.1 3.7 25 37-61 99-123 (302)
409 2i3b_A HCR-ntpase, human cance 93.4 0.035 1.2E-06 50.7 2.6 23 39-61 2-24 (189)
410 2cbz_A Multidrug resistance-as 93.4 0.047 1.6E-06 52.0 3.6 27 35-61 28-54 (237)
411 1gtv_A TMK, thymidylate kinase 93.4 0.019 6.4E-07 53.8 0.8 23 39-61 1-23 (214)
412 2j9r_A Thymidine kinase; TK1, 93.3 0.092 3.1E-06 48.4 5.3 125 23-163 13-139 (214)
413 1sq5_A Pantothenate kinase; P- 93.3 0.045 1.5E-06 54.6 3.5 26 36-61 78-103 (308)
414 2pcj_A ABC transporter, lipopr 93.3 0.039 1.3E-06 52.1 2.8 27 35-61 27-53 (224)
415 1q57_A DNA primase/helicase; d 93.3 0.17 5.9E-06 54.3 8.3 54 37-93 241-294 (503)
416 1np6_A Molybdopterin-guanine d 93.3 0.051 1.7E-06 48.8 3.4 24 38-61 6-29 (174)
417 3r20_A Cytidylate kinase; stru 93.2 0.047 1.6E-06 51.5 3.3 24 38-61 9-32 (233)
418 3nwj_A ATSK2; P loop, shikimat 93.2 0.04 1.4E-06 52.8 2.9 24 38-61 48-71 (250)
419 1b0u_A Histidine permease; ABC 93.2 0.051 1.7E-06 52.6 3.6 27 35-61 29-55 (262)
420 2qi9_C Vitamin B12 import ATP- 93.2 0.066 2.3E-06 51.3 4.4 27 35-61 23-49 (249)
421 3b85_A Phosphate starvation-in 93.2 0.041 1.4E-06 51.2 2.7 31 30-61 15-45 (208)
422 2wji_A Ferrous iron transport 93.1 0.061 2.1E-06 47.8 3.8 23 39-61 4-26 (165)
423 2eyu_A Twitching motility prot 93.1 0.058 2E-06 52.2 3.9 31 31-61 17-48 (261)
424 3ake_A Cytidylate kinase; CMP 93.1 0.048 1.7E-06 50.6 3.2 23 39-61 3-25 (208)
425 2olj_A Amino acid ABC transpor 93.1 0.055 1.9E-06 52.3 3.6 27 35-61 47-73 (263)
426 1e4v_A Adenylate kinase; trans 93.1 0.045 1.6E-06 51.2 3.0 22 40-61 2-23 (214)
427 2r6a_A DNAB helicase, replicat 93.1 0.19 6.4E-06 53.1 8.1 51 37-90 202-252 (454)
428 2xb4_A Adenylate kinase; ATP-b 93.1 0.048 1.7E-06 51.4 3.2 22 40-61 2-23 (223)
429 1mv5_A LMRA, multidrug resista 93.0 0.099 3.4E-06 50.0 5.3 27 35-61 25-51 (243)
430 3end_A Light-independent proto 93.0 0.072 2.5E-06 53.1 4.5 45 35-81 38-82 (307)
431 1nlf_A Regulatory protein REPA 93.0 0.054 1.9E-06 53.1 3.5 25 37-61 29-53 (279)
432 4g1u_C Hemin import ATP-bindin 93.0 0.079 2.7E-06 51.3 4.6 37 35-74 34-70 (266)
433 3sr0_A Adenylate kinase; phosp 92.9 0.054 1.9E-06 50.2 3.2 22 40-61 2-23 (206)
434 2ga8_A Hypothetical 39.9 kDa p 92.9 0.051 1.7E-06 54.4 3.2 26 36-61 22-47 (359)
435 1ak2_A Adenylate kinase isoenz 92.9 0.06 2.1E-06 51.1 3.6 24 38-61 16-39 (233)
436 1fx0_A ATP synthase alpha chai 92.9 0.11 3.9E-06 54.2 5.9 92 36-136 161-267 (507)
437 3mfy_A V-type ATP synthase alp 92.9 0.085 2.9E-06 55.6 4.9 44 35-82 224-267 (588)
438 3gfo_A Cobalt import ATP-bindi 92.9 0.051 1.7E-06 52.9 3.1 27 35-61 31-57 (275)
439 3lv8_A DTMP kinase, thymidylat 92.9 0.094 3.2E-06 49.6 4.8 36 38-74 27-62 (236)
440 2zej_A Dardarin, leucine-rich 92.9 0.054 1.9E-06 49.2 3.1 22 40-61 4-25 (184)
441 1vpl_A ABC transporter, ATP-bi 92.9 0.062 2.1E-06 51.7 3.6 27 35-61 38-64 (256)
442 2f1r_A Molybdopterin-guanine d 92.8 0.028 9.5E-07 50.4 1.0 23 39-61 3-25 (171)
443 2ghi_A Transport protein; mult 92.8 0.063 2.1E-06 51.9 3.6 27 35-61 43-69 (260)
444 1ji0_A ABC transporter; ATP bi 92.8 0.054 1.8E-06 51.7 3.1 27 35-61 29-55 (240)
445 4hlc_A DTMP kinase, thymidylat 92.8 0.055 1.9E-06 50.2 3.1 24 39-62 3-26 (205)
446 3be4_A Adenylate kinase; malar 92.8 0.052 1.8E-06 50.9 3.0 23 39-61 6-28 (217)
447 2v9p_A Replication protein E1; 92.8 0.06 2.1E-06 53.1 3.5 27 35-61 123-149 (305)
448 3k1j_A LON protease, ATP-depen 92.8 0.037 1.3E-06 60.9 2.2 40 22-61 41-83 (604)
449 1pzn_A RAD51, DNA repair and r 92.8 0.093 3.2E-06 53.2 5.0 45 36-80 129-177 (349)
450 1ltq_A Polynucleotide kinase; 92.8 0.06 2.1E-06 53.4 3.6 23 38-60 2-24 (301)
451 2pze_A Cystic fibrosis transme 92.8 0.055 1.9E-06 51.2 3.1 27 35-61 31-57 (229)
452 1sgw_A Putative ABC transporte 92.8 0.046 1.6E-06 51.0 2.5 27 35-61 32-58 (214)
453 2vp4_A Deoxynucleoside kinase; 92.7 0.055 1.9E-06 51.3 3.0 26 36-61 18-43 (230)
454 1g6h_A High-affinity branched- 92.7 0.056 1.9E-06 52.2 3.1 27 35-61 30-56 (257)
455 2ixe_A Antigen peptide transpo 92.7 0.066 2.3E-06 52.1 3.6 27 35-61 42-68 (271)
456 2ff7_A Alpha-hemolysin translo 92.7 0.057 2E-06 51.7 3.1 27 35-61 32-58 (247)
457 1cp2_A CP2, nitrogenase iron p 92.7 0.077 2.6E-06 51.6 4.2 40 39-80 2-41 (269)
458 2og2_A Putative signal recogni 92.7 0.066 2.3E-06 54.2 3.7 26 37-62 156-181 (359)
459 2zu0_C Probable ATP-dependent 92.7 0.066 2.3E-06 52.0 3.6 27 35-61 43-69 (267)
460 3iqw_A Tail-anchored protein t 92.7 0.096 3.3E-06 52.6 4.8 44 35-80 13-56 (334)
461 4tmk_A Protein (thymidylate ki 92.6 0.11 3.7E-06 48.4 4.8 25 38-62 3-27 (213)
462 4dzz_A Plasmid partitioning pr 92.6 0.14 4.6E-06 47.4 5.6 41 39-81 2-43 (206)
463 2yz2_A Putative ABC transporte 92.6 0.07 2.4E-06 51.8 3.6 27 35-61 30-56 (266)
464 1svm_A Large T antigen; AAA+ f 92.6 0.068 2.3E-06 54.6 3.6 27 35-61 166-192 (377)
465 2d2e_A SUFC protein; ABC-ATPas 92.6 0.063 2.2E-06 51.6 3.2 27 35-61 26-52 (250)
466 3io3_A DEHA2D07832P; chaperone 92.5 0.097 3.3E-06 52.8 4.6 45 35-79 15-59 (348)
467 1oix_A RAS-related protein RAB 92.5 0.062 2.1E-06 49.2 3.0 23 39-61 30-52 (191)
468 3hws_A ATP-dependent CLP prote 92.4 0.06 2.1E-06 55.1 3.1 25 37-61 50-74 (363)
469 3cmw_A Protein RECA, recombina 92.4 0.13 4.6E-06 62.2 6.3 87 39-134 384-471 (1706)
470 3v9p_A DTMP kinase, thymidylat 92.4 0.085 2.9E-06 49.6 3.7 25 38-62 25-49 (227)
471 2nq2_C Hypothetical ABC transp 92.3 0.067 2.3E-06 51.4 3.0 27 35-61 28-54 (253)
472 3cmu_A Protein RECA, recombina 92.3 0.16 5.3E-06 62.5 6.7 91 37-136 382-473 (2050)
473 2ihy_A ABC transporter, ATP-bi 92.2 0.072 2.5E-06 52.0 3.2 27 35-61 44-70 (279)
474 2hf9_A Probable hydrogenase ni 92.2 0.08 2.7E-06 49.9 3.5 27 35-61 35-61 (226)
475 1um8_A ATP-dependent CLP prote 92.2 0.066 2.3E-06 55.1 3.1 24 38-61 72-95 (376)
476 2f9l_A RAB11B, member RAS onco 92.2 0.076 2.6E-06 48.9 3.2 23 39-61 6-28 (199)
477 2lkc_A Translation initiation 92.2 0.12 4E-06 46.4 4.4 26 36-61 6-31 (178)
478 2zts_A Putative uncharacterize 92.2 0.062 2.1E-06 51.6 2.7 41 38-79 30-70 (251)
479 2v3c_C SRP54, signal recogniti 92.1 0.04 1.4E-06 57.5 1.2 39 37-77 98-136 (432)
480 3tqf_A HPR(Ser) kinase; transf 92.0 0.073 2.5E-06 47.0 2.6 24 38-61 16-39 (181)
481 3gqb_B V-type ATP synthase bet 92.0 0.13 4.5E-06 53.0 5.0 25 38-62 147-171 (464)
482 1p5z_B DCK, deoxycytidine kina 92.0 0.057 2E-06 52.4 2.2 26 36-61 22-47 (263)
483 3eph_A TRNA isopentenyltransfe 92.0 0.082 2.8E-06 53.9 3.3 24 38-61 2-25 (409)
484 3ld9_A DTMP kinase, thymidylat 91.9 0.11 3.9E-06 48.5 4.0 28 35-62 18-45 (223)
485 2ocp_A DGK, deoxyguanosine kin 91.9 0.088 3E-06 50.3 3.4 24 38-61 2-25 (241)
486 2dyk_A GTP-binding protein; GT 91.9 0.082 2.8E-06 46.5 2.9 23 39-61 2-24 (161)
487 2wjg_A FEOB, ferrous iron tran 91.8 0.098 3.4E-06 47.5 3.5 23 39-61 8-30 (188)
488 2afh_E Nitrogenase iron protei 91.8 0.097 3.3E-06 51.6 3.6 40 39-80 3-42 (289)
489 3sop_A Neuronal-specific septi 91.8 0.08 2.7E-06 51.5 2.9 22 40-61 4-25 (270)
490 3fvq_A Fe(3+) IONS import ATP- 91.8 0.091 3.1E-06 53.0 3.4 27 35-61 27-53 (359)
491 1yrb_A ATP(GTP)binding protein 91.8 0.099 3.4E-06 50.6 3.6 24 38-61 14-37 (262)
492 1q3t_A Cytidylate kinase; nucl 91.7 0.1 3.5E-06 49.6 3.6 25 37-61 15-39 (236)
493 2bbs_A Cystic fibrosis transme 91.7 0.097 3.3E-06 51.4 3.4 27 35-61 61-87 (290)
494 3p32_A Probable GTPase RV1496/ 91.7 0.13 4.3E-06 52.4 4.4 27 35-61 76-102 (355)
495 2pjz_A Hypothetical protein ST 91.7 0.092 3.1E-06 50.7 3.2 26 35-61 28-53 (263)
496 3pqc_A Probable GTP-binding pr 91.7 0.15 5E-06 46.5 4.5 38 24-61 8-46 (195)
497 1svi_A GTP-binding protein YSX 91.6 0.14 4.8E-06 46.7 4.3 27 35-61 20-46 (195)
498 1u0j_A DNA replication protein 91.6 0.11 3.8E-06 49.8 3.6 24 38-61 104-127 (267)
499 2nzj_A GTP-binding protein REM 91.5 0.1 3.5E-06 46.6 3.3 23 39-61 5-27 (175)
500 2c61_A A-type ATP synthase non 91.5 0.16 5.4E-06 52.8 4.9 54 37-90 151-207 (469)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.3e-40 Score=365.01 Aligned_cols=315 Identities=15% Similarity=0.227 Sum_probs=240.0
Q ss_pred eecccchhhc--------cCCCeEEEEEcCCCCCHHHHHHHhhC--CcccccCcCcEEEEEeCCCC--CHHHHHHHHHHH
Q 005181 25 SGKEDNNQLI--------QSERSVVAVVGEGGLGKTTVAGKIFN--SEGLKTHFNCRAWITVGKEY--KKNDLLRTILKE 92 (710)
Q Consensus 25 vGre~~~~~i--------~~~~~~i~i~G~~GvGKTtla~~~~~--~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~ 92 (710)
+||+++++.| ....++|+|+||||+||||||+++|+ +.+.+.+|++++|++++... +...++..++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 5999999988 23579999999999999999999996 44588999999999998875 678899999999
Q ss_pred HhhhcCCCCCccccchhHHHHHHHHHHHhcCC-ceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCchhhhhhccCC
Q 005181 93 FHRVANQPAPVEIHDMEEMELITTLRDHLKDK-SYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHMNVAKYCKSS 171 (710)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~~~~~~~~~~ 171 (710)
++..............+.+.+...+++.++++ |+||||||||+.+++ .+.. .+||+||||||++.++..+...
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 87653211222333445667889999999996 999999999997754 2221 1789999999999888765422
Q ss_pred CCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhhcCCCCCHHHHHHHHHhhc
Q 005181 172 SSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLLSTKNMVVSEWKKLFDRMG 251 (710)
Q Consensus 172 ~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (710)
..++++++|+.+||++||.+.++... ......+.+.+|++.|+|+|||+.++|+.++.+ .. +|...+....
T Consensus 285 --~~~~~l~~L~~~ea~~Lf~~~a~~~~----~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~--~w-~~~~~l~~~l 355 (549)
T 2a5y_B 285 --CEFIEVTSLEIDECYDFLEAYGMPMP----VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK--TF-EKMAQLNNKL 355 (549)
T ss_dssp --EEEEECCCCCHHHHHHHHHHTSCCCC------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS--SH-HHHHHHHHHH
T ss_pred --CeEEECCCCCHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc--hH-HHHHHhHHHh
Confidence 25799999999999999999986542 135677889999999999999999999999766 22 2322222211
Q ss_pred cccCCCcchhhHHHHHHhcccCCchhHHHHHh-----------hhcCCCCCcccchhHHHHHHHHC--CCCCCCC-CCCH
Q 005181 252 SILGSDPHLKDCNRVLSEGYHDLPHHLKSCLL-----------YFGLFPESCKVNCARLIRLWIAE--GFVPYCK-RPTS 317 (710)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l-----------~la~f~~~~~~~~~~l~~~w~~~--g~~~~~~-~~~~ 317 (710)
+... ...+..++..||+.|+++.|.||+ +||+||+++.++ +..|+++ |++.... ....
T Consensus 356 ~~~~----~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 356 ESRG----LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHC----SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred hccc----HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 1111 144566778888888888888888 999999999888 7899999 8887654 4455
Q ss_pred HHHHHHHHHHHhhCCceeeeecCCCCCEeEEEEcHhHHHHHHHhhcCcc
Q 005181 318 EQVAEECLNELIDRSLVQVSERDISGRARICQVHDLMHEIVVRKTEGLS 366 (710)
Q Consensus 318 ~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~h~li~~~~~~~~~~~~ 366 (710)
+++++ ++++|+++++++....+ ....|+|||++|+||+..+..+.
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHH
Confidence 66665 99999999999987643 23579999999999998876654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-34 Score=321.04 Aligned_cols=286 Identities=16% Similarity=0.213 Sum_probs=222.6
Q ss_pred eeecccchhhc------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCc-EEEEEeCCCCCHHHHHHHHHHHHhhh
Q 005181 24 FSGKEDNNQLI------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNC-RAWITVGKEYKKNDLLRTILKEFHRV 96 (710)
Q Consensus 24 ~vGre~~~~~i------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~-~~~v~~~~~~~~~~~~~~i~~~l~~~ 96 (710)
.|||++++++| ..+.++|+|+||||+||||||++++++.+...+|+. ++|++++...+...++..++..+...
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 49999999988 356899999999999999999999986657888985 99999999888888888887765543
Q ss_pred cCC---CCCc-cccchhHHHHHHHHHHHh---cCCceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCchhhhhhcc
Q 005181 97 ANQ---PAPV-EIHDMEEMELITTLRDHL---KDKSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHMNVAKYCK 169 (710)
Q Consensus 97 ~~~---~~~~-~~~~~~~~~~~~~~~~~l---~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~~~~~~~~ 169 (710)
... .... .....+.+++.+.+++.+ .++|+||||||||+.+.|+.+ ++||+||||||++.++..+.
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHhcC
Confidence 211 0000 001123455677777766 679999999999997776654 26899999999998875433
Q ss_pred CCCCcceEEcc------CCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhhcCCCCCHHHH
Q 005181 170 SSSSVHVHELE------TLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLLSTKNMVVSEW 243 (710)
Q Consensus 170 ~~~~~~~~~l~------~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~ 243 (710)
.. ..+.++ +|+.+||++||.+..... ..+...+ .|+|+||||+++|+.|+.+..+.++|
T Consensus 283 g~---~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~---------~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 283 AA---TTTHISLDHHSMTLTPDEVKSLLLKYLDCR---------PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HH---SSCEEEECSSSSCCCHHHHHHHHHHHHCCC---------TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred CC---eEEEecCccccCCcCHHHHHHHHHHHcCCC---------HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 21 356666 899999999999985211 1123333 39999999999999999875567888
Q ss_pred HHHHHhhccccCCCcchhhHHHHHHhcccCCchhH-HHHHhhhcCCCCCcccchhHHHHHHHHCCCCCCCCCCCHHHHHH
Q 005181 244 KKLFDRMGSILGSDPHLKDCNRVLSEGYHDLPHHL-KSCLLYFGLFPESCKVNCARLIRLWIAEGFVPYCKRPTSEQVAE 322 (710)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~-~~~~l~la~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~ 322 (710)
+.. ....+..+|..||+.|+++. |.||+++|+||+++.++.+.++.+|+++| ++.+.
T Consensus 348 ~~~------------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe 405 (1221)
T 1vt4_I 348 KHV------------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVM 405 (1221)
T ss_dssp HHC------------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHH
T ss_pred hcC------------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHH
Confidence 752 12789999999999999999 99999999999999999999999998775 13478
Q ss_pred HHHHHHhhCCceeeeecCCCCCEeEEEEcHhHHHHH
Q 005181 323 ECLNELIDRSLVQVSERDISGRARICQVHDLMHEIV 358 (710)
Q Consensus 323 ~~l~~L~~~sll~~~~~~~~~~~~~~~~h~li~~~~ 358 (710)
.++++|+++||++... ....|+||+++++++
T Consensus 406 ~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 406 VVVNKLHKYSLVEKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred HHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence 8999999999998731 124699999998854
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-33 Score=344.10 Aligned_cols=314 Identities=19% Similarity=0.286 Sum_probs=242.8
Q ss_pred cCCCCCceeecccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCCccc-ccCc-CcEEEEEeCCCCCH--HHH
Q 005181 17 FNFPHAGFSGKEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNSEGL-KTHF-NCRAWITVGKEYKK--NDL 85 (710)
Q Consensus 17 ~~~~~~~~vGre~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~-~~~f-~~~~~v~~~~~~~~--~~~ 85 (710)
.+.++..||||++++++| .++.++|+|+||||+||||||++++++.+. ..+| +.++|++++..... ...
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 444577899999999988 367899999999999999999999998532 4445 57889999875432 333
Q ss_pred HHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCC--ceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCchh
Q 005181 86 LRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDK--SYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHMN 163 (710)
Q Consensus 86 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~~ 163 (710)
+..++..+..... .......+.+++.+.++..+.++ |+||||||+|+.+++.. ..+||+||||||++.
T Consensus 199 ~~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~-------~~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 199 LQNLCMRLDQEES---FSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHTTTCT---TCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTT-------TCSSCEEEEEESSTT
T ss_pred HHHHHHHhhhhcc---cccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHh-------hcCCCEEEEEcCCHH
Confidence 5555555544321 11223345668888999999877 99999999998765443 367899999999998
Q ss_pred hhhhccCCCCcceEEccC-CCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhhcCCCCCHHH
Q 005181 164 VAKYCKSSSSVHVHELET-LPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLLSTKNMVVSE 242 (710)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~-l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~ 242 (710)
++..+.. ....+.+++ |+.+||++||...+... .....+.+++|++.|+|+||||+++|++|+.+.. .
T Consensus 269 ~~~~~~~--~~~~~~~~~~l~~~~a~~l~~~~~~~~------~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~---~ 337 (1249)
T 3sfz_A 269 VTDSVMG--PKHVVPVESGLGREKGLEILSLFVNMK------KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN---R 337 (1249)
T ss_dssp TTTTCCS--CBCCEECCSSCCHHHHHHHHHHHHTSC------STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS---C
T ss_pred HHHhhcC--CceEEEecCCCCHHHHHHHHHHhhCCC------hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh---H
Confidence 8754332 226889996 99999999999998433 2234567999999999999999999999988753 4
Q ss_pred HHHHHHhhccccCC------CcchhhHHHHHHhcccCCchhHHHHHhhhcCCCCCcccchhHHHHHHHHCCCCCCCCCCC
Q 005181 243 WKKLFDRMGSILGS------DPHLKDCNRVLSEGYHDLPHHLKSCLLYFGLFPESCKVNCARLIRLWIAEGFVPYCKRPT 316 (710)
Q Consensus 243 ~~~~~~~~~~~~~~------~~~~~~~~~~l~~s~~~L~~~~~~~~l~la~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~ 316 (710)
|...++++...... ......+..++..||+.|++++|.||++|++||+++.++.+.++.+|.++
T Consensus 338 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~---------- 407 (1249)
T 3sfz_A 338 WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE---------- 407 (1249)
T ss_dssp HHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC----------
Confidence 66666655433211 12236799999999999999999999999999999999999999999443
Q ss_pred HHHHHHHHHHHHhhCCceeeeecCCCCCEeEEEEcHhHHHHHHHhhcCc
Q 005181 317 SEQVAEECLNELIDRSLVQVSERDISGRARICQVHDLMHEIVVRKTEGL 365 (710)
Q Consensus 317 ~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~h~li~~~~~~~~~~~ 365 (710)
++.+.+++++|++++|++....+ ....|+||+++|+|++....++
T Consensus 408 -~~~~~~~l~~L~~~sl~~~~~~~---~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLLFCNRNG---KSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSCEEEESS---SSEEEECCHHHHHHHHHHTGGG
T ss_pred -HHHHHHHHHHHHhccceEEecCC---CceEEEecHHHHHHHHhhhhHH
Confidence 56789999999999999876532 3367999999999999875544
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=9.6e-33 Score=309.35 Aligned_cols=310 Identities=20% Similarity=0.304 Sum_probs=231.8
Q ss_pred CCCCCceeecccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCCccc-ccCc-CcEEEEEeCCCCCHHHHHHH
Q 005181 18 NFPHAGFSGKEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNSEGL-KTHF-NCRAWITVGKEYKKNDLLRT 88 (710)
Q Consensus 18 ~~~~~~~vGre~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~-~~~f-~~~~~v~~~~~~~~~~~~~~ 88 (710)
+.++..||||+.+++.| .++.++|+|+||||+||||||.+++++... ..+| ++++|++++.. +...++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 34577899999999988 246899999999999999999999998544 7788 48999998765 34444444
Q ss_pred HHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcC--CceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCchhhhh
Q 005181 89 ILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKD--KSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHMNVAK 166 (710)
Q Consensus 89 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~~~~~ 166 (710)
+..-................+.+.+...++..+.+ +++||||||+|+...+. ..+++++||||||++.+..
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~-------~l~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLK-------AFDSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHH-------TTCSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHH-------HhcCCCeEEEECCCcHHHH
Confidence 43322211111111112233455777888888876 78999999998855432 2367889999999998776
Q ss_pred hccCCCCcceEEc---cCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhhcCCCCCHHHH
Q 005181 167 YCKSSSSVHVHEL---ETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGGLLSTKNMVVSEW 243 (710)
Q Consensus 167 ~~~~~~~~~~~~l---~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~ 243 (710)
.+.. ..+++ ++|+.+||++||...++.. .....+.+.+|++.|+|+|+|++++|++++... ..|
T Consensus 272 ~~~~----~~~~v~~l~~L~~~ea~~L~~~~~~~~------~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~---~~w 338 (591)
T 1z6t_A 272 SVMG----PKYVVPVESSLGKEKGLEILSLFVNMK------KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP---NRW 338 (591)
T ss_dssp TCCS----CEEEEECCSSCCHHHHHHHHHHHHTSC------GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST---TCH
T ss_pred hcCC----CceEeecCCCCCHHHHHHHHHHHhCCC------cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc---hhH
Confidence 5432 34555 5899999999999998532 222346789999999999999999999998774 357
Q ss_pred HHHHHhhccccCC------CcchhhHHHHHHhcccCCchhHHHHHhhhcCCCCCcccchhHHHHHHHHCCCCCCCCCCCH
Q 005181 244 KKLFDRMGSILGS------DPHLKDCNRVLSEGYHDLPHHLKSCLLYFGLFPESCKVNCARLIRLWIAEGFVPYCKRPTS 317 (710)
Q Consensus 244 ~~~~~~~~~~~~~------~~~~~~~~~~l~~s~~~L~~~~~~~~l~la~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~ 317 (710)
...+..+...... .....++..++..||+.|+++.|.||+++|+||++..++.+.+..+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------- 407 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----------- 407 (591)
T ss_dssp HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------
Confidence 7766665433211 11226889999999999999999999999999999999999899888432
Q ss_pred HHHHHHHHHHHhhCCceeeeecCCCCCEeEEEEcHhHHHHHHHhh
Q 005181 318 EQVAEECLNELIDRSLVQVSERDISGRARICQVHDLMHEIVVRKT 362 (710)
Q Consensus 318 ~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~h~li~~~~~~~~ 362 (710)
.+.+..+++.|++++++..... +....|.||++++++++...
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 4457889999999999986543 23357999999999998773
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=2.7e-29 Score=289.46 Aligned_cols=251 Identities=23% Similarity=0.260 Sum_probs=143.2
Q ss_pred ccEEecCCCCCc-cCcccccCcccceEEEecccccc-ccCcchhcccCCCEEEcCCCccc-cccccccccccCcEEEccc
Q 005181 430 MKVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTEVK-IIPKSIRNLLSLEILDLKNTLVS-ELPVEIRNLKKLRYLMVYR 506 (710)
Q Consensus 430 L~~L~l~~n~~~-~l~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~-~~~~~~~~l~~L~~L~l~~ 506 (710)
|++|++++|.+. .+|..+.++++|+.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~- 474 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD- 474 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC-
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec-
Confidence 333333333333 23334444444444444444444 33444444444444444444332 334444444444444444
Q ss_pred cccccCccCCchhhhhccCCCCcCccEEEEeec-C-CCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeec
Q 005181 507 YNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-M-KKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTG 584 (710)
Q Consensus 507 ~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~-~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 584 (710)
+|.+++..+. ....+++|+.|+|++| + +.+|.++..+++|+.|+|++|.+++..|..++.+++|+.|++++
T Consensus 475 ~N~l~~~~p~-------~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 475 FNDLTGEIPS-------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp SSCCCSCCCG-------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred CCcccCcCCH-------HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 2333333222 1122346666666666 2 35566666666666666666666666666666666666666666
Q ss_pred ccCCceeEE----------------------------------------------------------------------e
Q 005181 585 TYDYELFHF----------------------------------------------------------------------E 594 (710)
Q Consensus 585 n~~~~~~~~----------------------------------------------------------------------~ 594 (710)
|.+.+.+|. .
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 654322221 1
Q ss_pred cCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccc
Q 005181 595 AGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVT 674 (710)
Q Consensus 595 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~ 674 (710)
+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+.++++|+.|+++ +|++.
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs--------------~N~l~ 693 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS--------------SNKLD 693 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC--------------SSCCE
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC--------------CCccc
Confidence 2334566667777776666666666677777777777777666677677777777777776 67888
Q ss_pred cCcCeEEEEEEeCCeeeEeehhhhc-cCcH
Q 005181 675 EHIPDVLVTFLAAGRVFQYRKDILS-SLSP 703 (710)
Q Consensus 675 ~~ip~~~~~~~~~l~~l~l~~N~l~-~~~~ 703 (710)
+.+|..+... +.|+.|++++|+++ .+|.
T Consensus 694 g~ip~~l~~l-~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 694 GRIPQAMSAL-TMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp ECCCGGGGGC-CCCSEEECCSSEEEEECCS
T ss_pred CcCChHHhCC-CCCCEEECcCCcccccCCC
Confidence 8888877665 78999999999998 4443
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3.9e-29 Score=285.84 Aligned_cols=262 Identities=11% Similarity=0.076 Sum_probs=112.6
Q ss_pred cccEEecCCCCCccCcc--cccCcccceEEEeccccccccCcchhcccCCCEEEcCCCcccccccccccccc-CcEEEcc
Q 005181 429 LMKVLDLEDAPVDYLPE--GVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKK-LRYLMVY 505 (710)
Q Consensus 429 ~L~~L~l~~n~~~~l~~--~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~-L~~L~l~ 505 (710)
+|+.|+|++|.+..+|. .+.++++|+.|++++|.++.+| .+..+++|+.|+|++|.+..+|..+.++++ |++|+++
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECC
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECc
Confidence 44444444444444444 4444555555555555544444 444455555555555544455544555555 5555555
Q ss_pred ccccccCccCCchhhhhccCCCC--cCccEEEEeec-C-CCCCc---ccc--CCCCccEEEEEeeccCCccccccccccc
Q 005181 506 RYNYTTGSIMPAEAVAKSLSSPP--QYLQRLYLMGN-M-KKLPD---WIF--KLENLIRLGLELSGLAEEPIRVLQASPN 576 (710)
Q Consensus 506 ~~n~~~~~~~~~~~~~~~l~~~~--~~L~~L~L~~n-~-~~ip~---~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 576 (710)
+ |.++. .+.. .... ++|+.|+|++| + +.+|. .+. .+++|+.|+|++|.++..+...+..+++
T Consensus 628 ~-N~L~~-lp~~-------~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~ 698 (876)
T 4ecn_A 628 H-NKLKY-IPNI-------FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698 (876)
T ss_dssp S-SCCCS-CCSC-------CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCC
T ss_pred C-CCCCc-Cchh-------hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCC
Confidence 2 33331 1110 0000 11333333333 1 11110 010 1123444444444443322222334444
Q ss_pred cceEEeecccCCceeEEecC-------CCCcccEEEeccCCCceeeeecCC--cCCCccEEEEccCCCCCCCccccccCC
Q 005181 577 LLELRLTGTYDYELFHFEAG-------WFPKLQKLLLWDFVAVKSVIIEKG--AMPDIRELEIGPCPLLMEIPIGIEHLR 647 (710)
Q Consensus 577 L~~L~L~~n~~~~~~~~~~~-------~~~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~p~~~~~l~ 647 (710)
|+.|+|++|.+....+..+. ++++|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+.+ +|..+.+++
T Consensus 699 L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~ 776 (876)
T 4ecn_A 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS 776 (876)
T ss_dssp CSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT
T ss_pred CCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC
Confidence 55555554444422211111 1124555555555443 3344433 45555555555555443 444455555
Q ss_pred CCcEEEEecCcH------------HHHH----hcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcHHHH
Q 005181 648 NLKLLRFDCMVK------------QVYY----MTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPEYV 706 (710)
Q Consensus 648 ~L~~L~l~~~~~------------~~~~----~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~~~ 706 (710)
+|+.|++++|+. .+.. ...++++|++ +.+|..++ +.|+.|++++|.+..+....+
T Consensus 777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT---PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---SSSCEEECCSCTTCEEECGGG
T ss_pred CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc---CCCCEEECCCCCCCccChHHc
Confidence 555555544320 0000 0001224444 67777644 567777777777776654443
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=7.6e-29 Score=279.06 Aligned_cols=269 Identities=10% Similarity=0.072 Sum_probs=183.2
Q ss_pred cCCceeEEEEEccCcccc-c-ccCCCCceeEEEeecCCCCCcchhhhhhccc------ccccEEecCCCCCccCcc--cc
Q 005181 378 RCSKTRRIAIQRSIDDGA-L-ESIKDSKVRSVFLFNVDKLPDSFMNASIANF------KLMKVLDLEDAPVDYLPE--GV 447 (710)
Q Consensus 378 ~~~~~r~l~l~~~~~~~~-~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~------~~L~~L~l~~n~~~~l~~--~~ 447 (710)
...+++++.+..+..... + ....+++|+.|.+.++..+.....|..+.++ ++|++|++++|.++.+|. .+
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence 678899999999876542 2 3566889999999988733331455666665 999999999999998888 89
Q ss_pred cCcccceEEEecccccc-ccCcchhcccCCCEEEcCCCcccccccccccccc-CcEEEccccccccCccCCchhhhhccC
Q 005181 448 GNLFNLHYLSVKNTEVK-IIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKK-LRYLMVYRYNYTTGSIMPAEAVAKSLS 525 (710)
Q Consensus 448 ~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~-L~~L~l~~~n~~~~~~~~~~~~~~~l~ 525 (710)
+++++|+.|++++|.++ .+| .+..+++|++|++++|.+..+|..+..+++ |++|++++ |.++ ..+.. +.
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~-N~l~-~lp~~------~~ 397 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH-NKLK-YIPNI------FD 397 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS-SCCS-SCCSC------CC
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC-CcCc-ccchh------hh
Confidence 99999999999999999 888 888999999999999988899988999999 99999984 5555 22221 11
Q ss_pred C-CCcCccEEEEeec-C-CCCCcccc-------CCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEec
Q 005181 526 S-PPQYLQRLYLMGN-M-KKLPDWIF-------KLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEA 595 (710)
Q Consensus 526 ~-~~~~L~~L~L~~n-~-~~ip~~~~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~ 595 (710)
. ..++|+.|++++| + +.+|..+. .+++|+.|+|++|.++..++..+..+++|+.|+|++|.+....+..+
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 1 1125666666666 2 33455554 55666666666666665444445556666666666666553322111
Q ss_pred C-------CCCcccEEEeccCCCceeeeecCC--cCCCccEEEEccCCCCCCCccccccCCCCcEEEEecC
Q 005181 596 G-------WFPKLQKLLLWDFVAVKSVIIEKG--AMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 596 ~-------~~~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 657 (710)
. .+++|+.|+|++|.+. .+|..+. .+++|+.|+|++|++.+ +|..+.++++|+.|++++|
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred ccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 1 1226666666666654 4555444 66666666666666554 5666666666666666544
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=6.6e-29 Score=286.23 Aligned_cols=258 Identities=22% Similarity=0.262 Sum_probs=189.2
Q ss_pred ccccEEecCCCCCc-cCcccccCcccceEEEecccccc-ccCcc-hhcccCCCEEEcCCCccc-cccccccccc-cCcEE
Q 005181 428 KLMKVLDLEDAPVD-YLPEGVGNLFNLHYLSVKNTEVK-IIPKS-IRNLLSLEILDLKNTLVS-ELPVEIRNLK-KLRYL 502 (710)
Q Consensus 428 ~~L~~L~l~~n~~~-~l~~~~~~l~~L~~L~l~~n~i~-~lp~~-~~~l~~L~~L~l~~n~~~-~~~~~~~~l~-~L~~L 502 (710)
++|++|++++|.+. .+|..++++++|+.|++++|.++ .+|.. +.++++|++|++++|.+. .+|..+.+++ +|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 55555555555544 33444555555555555555554 44443 455555555555555443 4444454444 55555
Q ss_pred EccccccccCccCCchhhhhccC-CCCcCccEEEEeec--CCCCCccccCCCCccEEEEEeeccCCccccccccccccce
Q 005181 503 MVYRYNYTTGSIMPAEAVAKSLS-SPPQYLQRLYLMGN--MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLE 579 (710)
Q Consensus 503 ~l~~~n~~~~~~~~~~~~~~~l~-~~~~~L~~L~L~~n--~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 579 (710)
+++ .|.+++..++ .+. ...++|+.|++++| .+.+|..+.++++|+.|++++|.+++..|..++.+++|+.
T Consensus 374 ~Ls-~N~l~~~~~~------~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 446 (768)
T 3rgz_A 374 DLS-SNNFSGPILP------NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446 (768)
T ss_dssp ECC-SSEEEEECCT------TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred Ecc-CCCcCCCcCh------hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCE
Confidence 555 2333333322 111 12457999999998 3478888999999999999999998888899999999999
Q ss_pred EEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcH
Q 005181 580 LRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVK 659 (710)
Q Consensus 580 L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~ 659 (710)
|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|.++..+++|++|+++
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~---- 522 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS---- 522 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC----
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC----
Confidence 9999999888888888889999999999999988889889999999999999999988899999999999999998
Q ss_pred HHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhc-cCcHHHHh
Q 005181 660 QVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILS-SLSPEYVE 707 (710)
Q Consensus 660 ~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~-~~~~~~~~ 707 (710)
+|++.+.+|..+... +.|+.|++++|.++ .+|..++.
T Consensus 523 ----------~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 523 ----------NNSFSGNIPAELGDC-RSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp ----------SSCCEEECCGGGGGC-TTCCEEECCSSEEESBCCGGGGT
T ss_pred ----------CCcccCcCCHHHcCC-CCCCEEECCCCccCCcCChHHhc
Confidence 567788899887665 89999999999999 77777654
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.6e-28 Score=266.55 Aligned_cols=305 Identities=14% Similarity=0.094 Sum_probs=238.3
Q ss_pred CCceeEEEEEccCccccc--ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC-cccccCcccceE
Q 005181 379 CSKTRRIAIQRSIDDGAL--ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHY 455 (710)
Q Consensus 379 ~~~~r~l~l~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~~ 455 (710)
+++++++.+..+.+.... ....+++|+.|.+.++.. ...+.+..|.++++|++|+|++|.+..+ |..+.++++|++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 467999999998887652 366789999999998865 2355677899999999999999999866 788999999999
Q ss_pred EEecccccc-ccCcc--hhcccCCCEEEcCCCccccc-ccc-ccccccCcEEEccccccccCccCCchhhh---------
Q 005181 456 LSVKNTEVK-IIPKS--IRNLLSLEILDLKNTLVSEL-PVE-IRNLKKLRYLMVYRYNYTTGSIMPAEAVA--------- 521 (710)
Q Consensus 456 L~l~~n~i~-~lp~~--~~~l~~L~~L~l~~n~~~~~-~~~-~~~l~~L~~L~l~~~n~~~~~~~~~~~~~--------- 521 (710)
|++++|.++ .+|.. +..+++|++|++++|.+..+ |.. +.++++|++|+++ +|.+++..+.....+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT-FNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT-TCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC-CCcccccChhhhhccccccccccc
Confidence 999999998 34444 88999999999999998877 444 8899999999999 466665544322111
Q ss_pred -------------------hccCCCCcCccEEEEeec-CC-CCCcccc--------------------------------
Q 005181 522 -------------------KSLSSPPQYLQRLYLMGN-MK-KLPDWIF-------------------------------- 548 (710)
Q Consensus 522 -------------------~~l~~~~~~L~~L~L~~n-~~-~ip~~~~-------------------------------- 548 (710)
..+. ..++|+.|++++| +. .+|..+.
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTT-TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred cccCcccccchhhcccccccccc-ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence 0011 1247888888887 32 1121111
Q ss_pred -------CCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCc
Q 005181 549 -------KLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGA 621 (710)
Q Consensus 549 -------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 621 (710)
..++|+.|++++|.+++..+..|+.+++|+.|++++|.+.+..+..+..+++|+.|+|++|.+.+..+..+..
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 2267888888888888888888889999999999999888877777888899999999999887777778888
Q ss_pred CCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccC
Q 005181 622 MPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSL 701 (710)
Q Consensus 622 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~ 701 (710)
+++|+.|++++|.+.+..|..+.++++|++|++++ |+ +..+|...+..++.|+.|++++|.++.-
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~--------------N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT--------------NQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--------------SC-CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCC--------------Cc-cccCCHhHhccCCcccEEEccCCCcccC
Confidence 99999999999998877788889999999999973 33 4457766655668999999999999844
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=261.39 Aligned_cols=296 Identities=14% Similarity=0.062 Sum_probs=215.8
Q ss_pred CCceeEEEEEccCccccc--ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcc-cccCcccceE
Q 005181 379 CSKTRRIAIQRSIDDGAL--ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHY 455 (710)
Q Consensus 379 ~~~~r~l~l~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~-~~~~l~~L~~ 455 (710)
+..++.+.+..+.+.... ....+++|+.|.+.++.. ....+..|.++++|++|+|++|.++.+|. .|.++++|++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 456777888777776543 355677888888877654 34556677788888888888888877754 4677888888
Q ss_pred EEecccccccc-CcchhcccCCCEEEcCCCcccccc-ccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccE
Q 005181 456 LSVKNTEVKII-PKSIRNLLSLEILDLKNTLVSELP-VEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQR 533 (710)
Q Consensus 456 L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~ 533 (710)
|++++|.++.+ |..|.++++|++|++++|.+..++ ..|.++++|++|++++ |.+++..+ ..+...++|+.
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~-------~~l~~l~~L~~ 180 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPT-------EALSHLHGLIV 180 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCH-------HHHTTCTTCCE
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccCh-------hHhcccCCCcE
Confidence 88888887744 445777888888888877776654 3577788888888874 44443321 11233357888
Q ss_pred EEEeec-CCCCC-ccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCC
Q 005181 534 LYLMGN-MKKLP-DWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVA 611 (710)
Q Consensus 534 L~L~~n-~~~ip-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~ 611 (710)
|+|++| +..++ ..+..+++|+.|++++|...+..+.......+|+.|++++|.+....+..+..+++|+.|+|++|.+
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 888887 44443 3567788888888888776655555555556888888888887776555678888899999998887
Q ss_pred ceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeee
Q 005181 612 VKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVF 691 (710)
Q Consensus 612 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l 691 (710)
.+..+..+..+++|+.|+|++|.+.+..|..+.++++|+.|++++ |.+..+|...+..++.|+.|
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~---------------N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG---------------NQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS---------------SCCSCCCGGGBSCGGGCCEE
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC---------------CcCceeCHhHcCCCcccCEE
Confidence 776666788888999999999988877788888889999999873 33456776666666889999
Q ss_pred Eeehhhhc
Q 005181 692 QYRKDILS 699 (710)
Q Consensus 692 ~l~~N~l~ 699 (710)
++++|.++
T Consensus 326 ~l~~N~l~ 333 (477)
T 2id5_A 326 ILDSNPLA 333 (477)
T ss_dssp ECCSSCEE
T ss_pred EccCCCcc
Confidence 99999987
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.6e-27 Score=272.62 Aligned_cols=288 Identities=13% Similarity=0.068 Sum_probs=209.2
Q ss_pred CceeEEEeecCCCCCcchhhh--hhcccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccC-CCE
Q 005181 402 SKVRSVFLFNVDKLPDSFMNA--SIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLS-LEI 478 (710)
Q Consensus 402 ~~l~~l~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~-L~~ 478 (710)
++|+.|.+.++... ..|. .|.++++|+.|+|++|.++.+| .+.++++|+.|++++|.++.+|..+..+++ |+.
T Consensus 548 ~~L~~L~Ls~N~L~---~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE---EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEG 623 (876)
T ss_dssp TTCCEEECCSSCCC---BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCE
T ss_pred CCccEEEeeCCcCC---ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCE
Confidence 35555555554431 2344 7899999999999999999999 899999999999999999999999999999 999
Q ss_pred EEcCCCcccccccccccccc--CcEEEccccccccCccCCchhhhhccC-CCCcCccEEEEeec-CCCCCccc-cCCCCc
Q 005181 479 LDLKNTLVSELPVEIRNLKK--LRYLMVYRYNYTTGSIMPAEAVAKSLS-SPPQYLQRLYLMGN-MKKLPDWI-FKLENL 553 (710)
Q Consensus 479 L~l~~n~~~~~~~~~~~l~~--L~~L~l~~~n~~~~~~~~~~~~~~~l~-~~~~~L~~L~L~~n-~~~ip~~~-~~l~~L 553 (710)
|+|++|.+..+|..+..++. |+.|+++ .|.+++..+... ..+. ....+|+.|+|++| +..+|..+ ..+++|
T Consensus 624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls-~N~l~g~ip~l~---~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L 699 (876)
T 4ecn_A 624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFS-YNKIGSEGRNIS---CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699 (876)
T ss_dssp EECCSSCCCSCCSCCCTTCSSCEEEEECC-SSCTTTTSSSCS---SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCC
T ss_pred EECcCCCCCcCchhhhccccCCCCEEECc-CCcCCCccccch---hhhccccCCCcCEEEccCCcCCccCHHHHccCCCC
Confidence 99999999999988877654 9999999 566666443210 0010 11237888888888 77788765 478888
Q ss_pred cEEEEEeeccCCccccccc-------cccccceEEeecccCCceeEEecC--CCCcccEEEeccCCCceeeeecCCcCCC
Q 005181 554 IRLGLELSGLAEEPIRVLQ-------ASPNLLELRLTGTYDYELFHFEAG--WFPKLQKLLLWDFVAVKSVIIEKGAMPD 624 (710)
Q Consensus 554 ~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~~~~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~l~~ 624 (710)
+.|+|++|.++..+...+. ++++|+.|+|++|.+.. +|..+. .+++|+.|+|++|.+.+ +|..+..+++
T Consensus 700 ~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~ 777 (876)
T 4ecn_A 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ 777 (876)
T ss_dssp SEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred CEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence 8888888888755444443 23488888888888774 455555 78888888888888776 6777788888
Q ss_pred ccEEEEcc------CCCCCCCccccccCCCCcEEEEecCcHH-----HHHhc--ccCCcCccccCcCeEEEEEEeCCeee
Q 005181 625 IRELEIGP------CPLLMEIPIGIEHLRNLKLLRFDCMVKQ-----VYYMT--KDENWGKVTEHIPDVLVTFLAAGRVF 691 (710)
Q Consensus 625 L~~L~l~~------n~~~~~~p~~~~~l~~L~~L~l~~~~~~-----~~~~~--~~~~~n~~~~~ip~~~~~~~~~l~~l 691 (710)
|+.|+|++ |.+.+.+|..+.++++|+.|++++|... +...+ .++++|.+...-+..+... ..+..+
T Consensus 778 L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l~~i~~~~~~~~-~~~~~~ 856 (876)
T 4ecn_A 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPY-IEAGMY 856 (876)
T ss_dssp CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTTCEEECGGGHHH-HHTTCC
T ss_pred CCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCCCccChHHcccc-ccchhe
Confidence 88888866 6677778888888888888888888531 11111 2266666554333333222 345566
Q ss_pred Eeehhhhcc
Q 005181 692 QYRKDILSS 700 (710)
Q Consensus 692 ~l~~N~l~~ 700 (710)
.|.+|.+..
T Consensus 857 ~L~~n~~~~ 865 (876)
T 4ecn_A 857 VLLYDKTQD 865 (876)
T ss_dssp EEECCTTSE
T ss_pred eecCCCccc
Confidence 777776653
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.9e-27 Score=242.67 Aligned_cols=229 Identities=22% Similarity=0.264 Sum_probs=189.1
Q ss_pred ccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEcc
Q 005181 426 NFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVY 505 (710)
Q Consensus 426 ~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~ 505 (710)
...+++.|+|++|.++.+|..+.++++|++|++++|.++.+|..+.++++|++|+|++|.+..+|..+.++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 35788999999999999998888999999999999999999988999999999999999988999999999999999999
Q ss_pred ccccccCccCCchhh--hhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEe
Q 005181 506 RYNYTTGSIMPAEAV--AKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRL 582 (710)
Q Consensus 506 ~~n~~~~~~~~~~~~--~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 582 (710)
+|+.. +..+..... ....+...++|+.|+|++| +..+|..+..+++|+.|+|++|.+++. +..++.+++|+.|+|
T Consensus 159 ~n~~~-~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPEL-TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTC-CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEEC
T ss_pred CCCCc-cccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEEC
Confidence 65443 444331100 0000122458889999888 778888888899999999999988864 456888889999999
Q ss_pred ecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEec
Q 005181 583 TGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDC 656 (710)
Q Consensus 583 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 656 (710)
++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|+.+++..
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 98888888888888889999999999888888888888889999999999888888898899999999888874
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.3e-27 Score=266.06 Aligned_cols=136 Identities=14% Similarity=0.116 Sum_probs=88.7
Q ss_pred ccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCce--eeeecCCcCCCccEEEEccCCCCCCCcc-ccccCCC
Q 005181 572 QASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVK--SVIIEKGAMPDIRELEIGPCPLLMEIPI-GIEHLRN 648 (710)
Q Consensus 572 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~~~~l~~ 648 (710)
+.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+.+.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 456677777777776666555556667777777777776654 3345566777777777777776654554 3666677
Q ss_pred CcEEEEecCcHH--HH----Hhc--ccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcHHHHhhc
Q 005181 649 LKLLRFDCMVKQ--VY----YMT--KDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPEYVEQI 709 (710)
Q Consensus 649 L~~L~l~~~~~~--~~----~~~--~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~~~~~~ 709 (710)
|+.|++++|... .+ ..+ .++++|+ +..+|..++ .++.|+.|++++|.|+.+|++.+..+
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l 496 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRL 496 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcC
Confidence 777777766421 00 111 2255654 457888877 55899999999999999988755543
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=5.7e-28 Score=272.12 Aligned_cols=88 Identities=16% Similarity=0.037 Sum_probs=47.9
Q ss_pred ccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCce-eeeecCCcCCCccEEEEccCCCCCCCccccccCCC
Q 005181 570 VLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVK-SVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRN 648 (710)
Q Consensus 570 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 648 (710)
.+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+.+..|..+.++++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 34444455555555544444334444555555555555555544 24555556666666666666655555555666666
Q ss_pred CcEEEEecC
Q 005181 649 LKLLRFDCM 657 (710)
Q Consensus 649 L~~L~l~~~ 657 (710)
|+.|++++|
T Consensus 499 L~~L~Ls~N 507 (606)
T 3vq2_A 499 LQLLNMSHN 507 (606)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 666666644
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=262.22 Aligned_cols=320 Identities=15% Similarity=0.120 Sum_probs=220.9
Q ss_pred CceeEEEEEccCccccc--ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEE
Q 005181 380 SKTRRIAIQRSIDDGAL--ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLS 457 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~ 457 (710)
++++++.+..+.+...+ ....+++|+.|.+.++.. ....+..|.++++|++|+|++|.++.+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 67888888888776553 356778888888887765 355667788888888888888888877765 788888888
Q ss_pred eccccccc--cCcchhcccCCCEEEcCCCccccccccccccccC--cEEEccccccc--cCccCCchhhhh---------
Q 005181 458 VKNTEVKI--IPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKL--RYLMVYRYNYT--TGSIMPAEAVAK--------- 522 (710)
Q Consensus 458 l~~n~i~~--lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L--~~L~l~~~n~~--~~~~~~~~~~~~--------- 522 (710)
+++|.++. +|..++++++|++|++++|.+.. ..+..+++| ++|++++ |.+ ++..+.....+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~-n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVL-GETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEE-CTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeec-ccccccccccccccccccceEEEEec
Confidence 88888874 56778888888888888877765 346667777 7777774 333 222221110000
Q ss_pred -----------------------------------------ccCCC--------------------------CcCccEEE
Q 005181 523 -----------------------------------------SLSSP--------------------------PQYLQRLY 535 (710)
Q Consensus 523 -----------------------------------------~l~~~--------------------------~~~L~~L~ 535 (710)
.+... .++|+.|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 00000 12677788
Q ss_pred Eeec-C-CCCCccc-----cCCCCccEEEEEeeccCCcccc-------------------------ccccccccceEEee
Q 005181 536 LMGN-M-KKLPDWI-----FKLENLIRLGLELSGLAEEPIR-------------------------VLQASPNLLELRLT 583 (710)
Q Consensus 536 L~~n-~-~~ip~~~-----~~l~~L~~L~L~~n~l~~~~~~-------------------------~l~~l~~L~~L~L~ 583 (710)
+++| + +.+|..+ ..+++|+.+++++|.+ ..+.. .+..+++|+.|+++
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred eecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 8777 3 4777766 6666666666666655 21100 01577888888888
Q ss_pred cccCCceeEEecCCCCcccEEEeccCCCce--eeeecCCcCCCccEEEEccCCCCCCCccc-cccCCCCcEEEEecCcHH
Q 005181 584 GTYDYELFHFEAGWFPKLQKLLLWDFVAVK--SVIIEKGAMPDIRELEIGPCPLLMEIPIG-IEHLRNLKLLRFDCMVKQ 660 (710)
Q Consensus 584 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~~~~~ 660 (710)
+|.+.+..+..+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|...
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 888877666677888888888888888765 45566788888888888888887656654 777888888888887431
Q ss_pred --HH----Hhc--ccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcHHHHhhc
Q 005181 661 --VY----YMT--KDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPEYVEQI 709 (710)
Q Consensus 661 --~~----~~~--~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~~~~~~ 709 (710)
.. ..+ .++++|++. .+|..++ .++.|+.|++++|.++.+|++.+.++
T Consensus 413 ~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l 467 (520)
T 2z7x_B 413 DTIFRCLPPRIKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLKSVPDGIFDRL 467 (520)
T ss_dssp GGGGGSCCTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cchhhhhcccCCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCCccCHHHhccC
Confidence 11 111 236675554 8888777 45899999999999999888766543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=8.2e-28 Score=270.66 Aligned_cols=319 Identities=11% Similarity=0.082 Sum_probs=261.6
Q ss_pred ccccCCceeEEEEEccCccc------------------ccccC---CCCceeEEEeecCCCCCcchhhhhhcccccccEE
Q 005181 375 DLSRCSKTRRIAIQRSIDDG------------------ALESI---KDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVL 433 (710)
Q Consensus 375 ~~~~~~~~r~l~l~~~~~~~------------------~~~~~---~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L 433 (710)
.+...++++.+.+..+.+.. .++.. .+++|+.|.+.++.. ....|..|.++++|++|
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN--LTKLPTFLKALPEMQLI 278 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT--CSSCCTTTTTCSSCCEE
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC--CccChHHHhcCCCCCEE
Confidence 46678899999999999887 55543 589999999999876 34566889999999999
Q ss_pred ecCCCC-Ccc--CcccccCc------ccceEEEeccccccccCc--chhcccCCCEEEcCCCccc-cccccccccccCcE
Q 005181 434 DLEDAP-VDY--LPEGVGNL------FNLHYLSVKNTEVKIIPK--SIRNLLSLEILDLKNTLVS-ELPVEIRNLKKLRY 501 (710)
Q Consensus 434 ~l~~n~-~~~--l~~~~~~l------~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~n~~~-~~~~~~~~l~~L~~ 501 (710)
++++|. ++. +|..++.+ ++|+.|++++|.++.+|. .+.++++|++|++++|.+. .+| .+..+++|++
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 999998 874 78888776 999999999999999999 8999999999999999987 999 8999999999
Q ss_pred EEccccccccCccCCchhhhhccCCCCcC-ccEEEEeec-CCCCCccccCCC--CccEEEEEeeccCCccccccc-----
Q 005181 502 LMVYRYNYTTGSIMPAEAVAKSLSSPPQY-LQRLYLMGN-MKKLPDWIFKLE--NLIRLGLELSGLAEEPIRVLQ----- 572 (710)
Q Consensus 502 L~l~~~n~~~~~~~~~~~~~~~l~~~~~~-L~~L~L~~n-~~~ip~~~~~l~--~L~~L~L~~n~l~~~~~~~l~----- 572 (710)
|++++ |.++ ..+. .+... ++ |+.|++++| +..+|..+..++ +|+.|++++|.+++..|..|.
T Consensus 358 L~L~~-N~l~-~lp~------~l~~l-~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 358 LNLAY-NQIT-EIPA------NFCGF-TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EECCS-SEEE-ECCT------TSEEE-CTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred EECCC-Cccc-cccH------hhhhh-cccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 99995 5555 3322 23333 46 999999999 788998886655 999999999999998888888
Q ss_pred --cccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCc--------CCCccEEEEccCCCCCCCccc
Q 005181 573 --ASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGA--------MPDIRELEIGPCPLLMEIPIG 642 (710)
Q Consensus 573 --~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~--------l~~L~~L~l~~n~~~~~~p~~ 642 (710)
.+++|+.|+|++|.+....+..+..+++|+.|+|++|.+. .+|..... +++|+.|++++|.+. .+|..
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 8889999999999998765555667999999999999987 55544322 339999999999987 78888
Q ss_pred cc--cCCCCcEEEEecCcHHH-HHh------c--ccC------CcCccccCcCeEEEEEEeCCeeeEeehhhhccCcHHH
Q 005181 643 IE--HLRNLKLLRFDCMVKQV-YYM------T--KDE------NWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPEY 705 (710)
Q Consensus 643 ~~--~l~~L~~L~l~~~~~~~-~~~------~--~~~------~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~~ 705 (710)
+. .+++|+.|++++|...- +.. + .++ ++|++.+.+|..+... +.|+.|++++|.++.+|...
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~ip~~~ 585 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC-PSLTQLQIGSNDIRKVNEKI 585 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC-SSCCEEECCSSCCCBCCSCC
T ss_pred hhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC-CCCCEEECCCCcCCccCHhH
Confidence 87 99999999999985321 111 1 113 5677888899887664 89999999999999998765
Q ss_pred Hhh
Q 005181 706 VEQ 708 (710)
Q Consensus 706 ~~~ 708 (710)
+.+
T Consensus 586 ~~~ 588 (636)
T 4eco_A 586 TPN 588 (636)
T ss_dssp CTT
T ss_pred hCc
Confidence 543
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=2.7e-27 Score=266.54 Aligned_cols=324 Identities=15% Similarity=0.076 Sum_probs=209.6
Q ss_pred CCccccCCceeEEEEEccCcccccc--cCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC-cccccC
Q 005181 373 GVDLSRCSKTRRIAIQRSIDDGALE--SIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGN 449 (710)
Q Consensus 373 ~~~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~ 449 (710)
...+...++++++.+..+.+....+ ...+++|+.|.+.++.. ....+..|+++++|++|++++|.++.+ +..+.+
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~ 127 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL--IFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTT
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc--cccChhhhcccccccEeeccccCcccCCcchhcc
Confidence 3345556677777777766654322 45567777777776654 344556677777777777777777765 556677
Q ss_pred cccceEEEeccccccccC-cchhcccCCCEEEcCCCcccccc-ccccccccCc--EEEccccccccCccCCchh------
Q 005181 450 LFNLHYLSVKNTEVKIIP-KSIRNLLSLEILDLKNTLVSELP-VEIRNLKKLR--YLMVYRYNYTTGSIMPAEA------ 519 (710)
Q Consensus 450 l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~--~L~l~~~n~~~~~~~~~~~------ 519 (710)
+++|++|++++|.++.++ +.+..+++|++|++++|.+..++ ..+..+++|+ .|++++ |.+++..+....
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~-n~l~~~~~~~~~~~~L~~ 206 (606)
T 3t6q_A 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG-NDIAGIEPGAFDSAVFQS 206 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT-CCCCEECTTTTTTCEEEE
T ss_pred CCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC-CccCccChhHhhhccccc
Confidence 777777777777777542 23444777777777777666653 3466677777 666663 333332221100
Q ss_pred --------------------------------------------------------------hhhccCCCCcCccEEEEe
Q 005181 520 --------------------------------------------------------------VAKSLSSPPQYLQRLYLM 537 (710)
Q Consensus 520 --------------------------------------------------------------~~~~l~~~~~~L~~L~L~ 537 (710)
.....+...++|+.|+++
T Consensus 207 L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 286 (606)
T 3t6q_A 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286 (606)
T ss_dssp EECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECT
T ss_pred cccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEecc
Confidence 001112334578888888
Q ss_pred ec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeE-EecCCCCcccEEEeccCCCceee
Q 005181 538 GN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFH-FEAGWFPKLQKLLLWDFVAVKSV 615 (710)
Q Consensus 538 ~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~L~~n~~~~~~ 615 (710)
+| +..+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+..
T Consensus 287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred CCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 88 77788888888888888888888887777788888888888888887664333 34677888888888888876655
Q ss_pred --eecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHH------HH-----hcccCCcCccccCcCeEEE
Q 005181 616 --IIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQV------YY-----MTKDENWGKVTEHIPDVLV 682 (710)
Q Consensus 616 --~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~------~~-----~~~~~~~n~~~~~ip~~~~ 682 (710)
+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|...- .. ...++++|.+.+..|..+.
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence 5567788888888888888776677778888888888888653210 00 0011444444443343332
Q ss_pred EEEeCCeeeEeehhhhcc
Q 005181 683 TFLAAGRVFQYRKDILSS 700 (710)
Q Consensus 683 ~~~~~l~~l~l~~N~l~~ 700 (710)
. ++.|+.|++++|.++.
T Consensus 447 ~-l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 447 G-LPALQHLNLQGNHFPK 463 (606)
T ss_dssp T-CTTCCEEECTTCBCGG
T ss_pred C-CCCCCEEECCCCCCCc
Confidence 2 3566666666666653
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.5e-27 Score=266.87 Aligned_cols=137 Identities=12% Similarity=0.005 Sum_probs=78.6
Q ss_pred cccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeee-ecCCcCCCccEEEEccCCCCCCCccccccCCCC
Q 005181 571 LQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVI-IEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNL 649 (710)
Q Consensus 571 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 649 (710)
+..+++|+.|++++|.+....+. +..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.++++|
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 447 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred ccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC
Confidence 33444555555555444443332 5555666666666655444333 345666777777777777666666667777777
Q ss_pred cEEEEecCcHH---HHH--------hcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcHHHHhhc
Q 005181 650 KLLRFDCMVKQ---VYY--------MTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPEYVEQI 709 (710)
Q Consensus 650 ~~L~l~~~~~~---~~~--------~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~~~~~~ 709 (710)
+.|++++|... ++. ...++++|++.+..|..+.. ++.|+.|++++|.++.++++.+.++
T Consensus 448 ~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc-ccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 77777776432 111 01125555555544554443 3777778888888877777666544
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=5.9e-27 Score=255.62 Aligned_cols=283 Identities=19% Similarity=0.166 Sum_probs=188.8
Q ss_pred CCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC-cccccCcccceEEEeccccccccCcc-hhcccCCCE
Q 005181 401 DSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTEVKIIPKS-IRNLLSLEI 478 (710)
Q Consensus 401 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~ 478 (710)
.+.++.|.+.++.. ....+..|.++++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+|.. |.++++|++
T Consensus 31 ~~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 35677777776654 344556677777777777777777755 66677777777777777777766654 677777777
Q ss_pred EEcCCCccccc-cccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCc-cccCCCCccE
Q 005181 479 LDLKNTLVSEL-PVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPD-WIFKLENLIR 555 (710)
Q Consensus 479 L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~-~~~~l~~L~~ 555 (710)
|+|++|.+..+ |..+.++++|++|++++ |.+++..+. .+...++|+.|+|++| +..+|. .+.++++|+.
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHR-------AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTT-------SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred EECCCCccccCChhHccccccCCEEECCC-CccceeChh-------hccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 77777776655 34567777777777773 444433322 1233347777777777 555654 4677777777
Q ss_pred EEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCC
Q 005181 556 LGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPL 635 (710)
Q Consensus 556 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 635 (710)
|++++|.+....+..|..+++|+.|++++|...+..+.......+|+.|++++|.+....+..+..+++|+.|+|++|.+
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 77777777776666777777777777777766555554444555777777777776554445566777777777777777
Q ss_pred CCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcHHHHhh
Q 005181 636 LMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPEYVEQ 708 (710)
Q Consensus 636 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~~~~~ 708 (710)
.+..+..+..+++|+.|++++ |++.+..|..+ ..++.|+.|++++|.|+.++++.|.+
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~--------------n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVG--------------GQLAVVEPYAF-RGLNYLRVLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCS--------------SCCSEECTTTB-TTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred CccChhhccccccCCEEECCC--------------CccceECHHHh-cCcccCCEEECCCCcCceeCHhHcCC
Confidence 655556677777777777763 34443334333 33377777777777777777766544
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=7e-28 Score=246.78 Aligned_cols=222 Identities=20% Similarity=0.216 Sum_probs=127.2
Q ss_pred CceeEEEeecCCCCCcchhhhhhcccccccEEecCC-CCCc-cCcccccCcccceEEEecccccc-ccCcchhcccCCCE
Q 005181 402 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLED-APVD-YLPEGVGNLFNLHYLSVKNTEVK-IIPKSIRNLLSLEI 478 (710)
Q Consensus 402 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~-~l~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~ 478 (710)
.+++.|.+.++........+..|.++++|++|++++ |.+. .+|..+.++++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777665522114456677777777777774 6655 55667777777777777777776 66666777777777
Q ss_pred EEcCCCccc-cccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCC-CccEE
Q 005181 479 LDLKNTLVS-ELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLE-NLIRL 556 (710)
Q Consensus 479 L~l~~n~~~-~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~-~L~~L 556 (710)
|++++|.+. .+|..+..+++|++|++++ |.+++.. |..+..++ +|+.|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~-----------------------------p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAI-----------------------------PDSYGSFSKLFTSM 179 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCS-SCCEEEC-----------------------------CGGGGCCCTTCCEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcC-CcccCcC-----------------------------CHHHhhhhhcCcEE
Confidence 777777665 5666677777777777763 4444333 33444444 45555
Q ss_pred EEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCC
Q 005181 557 GLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLL 636 (710)
Q Consensus 557 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 636 (710)
++++|.+++..|..+..++ |+.|++++|.+.+..+..+..+++|+.|+|++|.+.+.+|. +..+++|+.|++++|.+.
T Consensus 180 ~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCE
T ss_pred ECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCccc
Confidence 5555554444444444443 55555555544444444444455555555555544333332 344455555555555554
Q ss_pred CCCccccccCCCCcEEEEe
Q 005181 637 MEIPIGIEHLRNLKLLRFD 655 (710)
Q Consensus 637 ~~~p~~~~~l~~L~~L~l~ 655 (710)
+.+|..+..+++|+.|+++
T Consensus 258 ~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 258 GTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp ECCCGGGGGCTTCCEEECC
T ss_pred CcCChHHhcCcCCCEEECc
Confidence 4455555555555555554
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=4.2e-27 Score=265.04 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=21.2
Q ss_pred cCccccCcCeEEEEEEeCCeeeEeehhhhccCcHHHHhh
Q 005181 670 WGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPEYVEQ 708 (710)
Q Consensus 670 ~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~~~~~ 708 (710)
+|++.+..|..+... +.| .+++++|.++.++++.+++
T Consensus 509 ~N~l~~~~~~~l~~l-~~L-~L~L~~N~l~~~~~~~~~~ 545 (606)
T 3t6q_A 509 HNRLTSSSIEALSHL-KGI-YLNLASNHISIILPSLLPI 545 (606)
T ss_dssp SSCCCGGGGGGGTTC-CSC-EEECCSSCCCCCCGGGHHH
T ss_pred CCccCcCChhHhCcc-ccc-EEECcCCcccccCHhhccc
Confidence 445555444444333 556 6777777777666665544
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.9e-27 Score=243.51 Aligned_cols=243 Identities=15% Similarity=0.148 Sum_probs=188.0
Q ss_pred CceeEEEEEccCccc----ccccCCCCceeEEEeec-CCCCCcchhhhhhcccccccEEecCCCCCc-cCcccccCcccc
Q 005181 380 SKTRRIAIQRSIDDG----ALESIKDSKVRSVFLFN-VDKLPDSFMNASIANFKLMKVLDLEDAPVD-YLPEGVGNLFNL 453 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~----~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~l~~~~~~l~~L 453 (710)
.+++++.+..+.... ......+++|+.|.+.+ +.. ....+..|.++++|++|++++|.+. .+|..+.++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL--VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE--ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc--cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 579999999988864 23466789999999996 443 3355678999999999999999998 779999999999
Q ss_pred eEEEecccccc-ccCcchhcccCCCEEEcCCCccc-cccccccccc-cCcEEEccccccccCccCCchhhhhccCCCCcC
Q 005181 454 HYLSVKNTEVK-IIPKSIRNLLSLEILDLKNTLVS-ELPVEIRNLK-KLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQY 530 (710)
Q Consensus 454 ~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~-~~~~~~~~l~-~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~ 530 (710)
++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..++ +|++|++++ |.+++..
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~---------------- 190 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKI---------------- 190 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEEC----------------
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC-CeeeccC----------------
Confidence 99999999999 88999999999999999999887 8898999988 899999984 5544333
Q ss_pred ccEEEEeecCCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCC
Q 005181 531 LQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFV 610 (710)
Q Consensus 531 L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 610 (710)
|..+..++ |+.|++++|.+++..+..|..+++|+.|+|++|.+....+. +..+++|++|+|++|.
T Consensus 191 -------------~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 191 -------------PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp -------------CGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred -------------ChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence 33444454 67777777776666666677777777777777766554433 5566777777777777
Q ss_pred CceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecC
Q 005181 611 AVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 611 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 657 (710)
+.+.+|..+..+++|+.|++++|++.+.+|.. ..+++|+.|++++|
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 76677777777777777777777777667654 66777777777654
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.9e-26 Score=239.16 Aligned_cols=281 Identities=15% Similarity=0.091 Sum_probs=125.2
Q ss_pred CceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEEec
Q 005181 380 SKTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVK 459 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~ 459 (710)
++++++.+..+.....+....+++++.|.+.++... ...+ +..+++|++|++++|.++.++ .+.++++|++|+++
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~--~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT--DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccc--cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 344555555544444433444555555555544331 1111 455555555555555554443 34455555555555
Q ss_pred cccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec
Q 005181 460 NTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN 539 (710)
Q Consensus 460 ~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n 539 (710)
+|.++.++. +..+++|++|++++|.....++.+..+++|++|++++ +.+++... ....++|+.|++++|
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~---------~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE-SKVKDVTP---------IANLTDLYSLSLNYN 187 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS-SCCCCCGG---------GGGCTTCSEEECTTS
T ss_pred CCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecC-CCcCCchh---------hccCCCCCEEEccCC
Confidence 555554443 4455555555555442222222344555555555542 22221110 111224444444444
Q ss_pred -CCCCCc---------------------cccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCC
Q 005181 540 -MKKLPD---------------------WIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGW 597 (710)
Q Consensus 540 -~~~ip~---------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 597 (710)
+..++. .+..+++|+.|++++|.++...+ +..+++|+.|++++|.+... ..+..
T Consensus 188 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~ 263 (347)
T 4fmz_A 188 QIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD 263 (347)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred cccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhc
Confidence 333332 14444555555555554444322 44445555555555444432 12444
Q ss_pred CCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCc
Q 005181 598 FPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHI 677 (710)
Q Consensus 598 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~i 677 (710)
+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|..+.++++|+.|+++ +|.+.+..
T Consensus 264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~--------------~n~l~~~~ 327 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS--------------QNHITDIR 327 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC--------------SSSCCCCG
T ss_pred CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc--------------CCcccccc
Confidence 45555555555543332 223444555555555555444444444445555555554 33333322
Q ss_pred CeEEEEEEeCCeeeEeehhhhc
Q 005181 678 PDVLVTFLAAGRVFQYRKDILS 699 (710)
Q Consensus 678 p~~~~~~~~~l~~l~l~~N~l~ 699 (710)
| +..++.|+.+++++|.|+
T Consensus 328 ~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 328 P---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp G---GGGCTTCSEESSSCC---
T ss_pred C---hhhhhccceeehhhhccc
Confidence 3 223356666666666654
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-26 Score=245.40 Aligned_cols=295 Identities=14% Similarity=0.128 Sum_probs=229.5
Q ss_pred CCceeEEEEEccCcccccc--cCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC-cccccCcccceE
Q 005181 379 CSKTRRIAIQRSIDDGALE--SIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHY 455 (710)
Q Consensus 379 ~~~~r~l~l~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~~ 455 (710)
..+++.+.+..+.....+. ...+++++.|.+.++.. ....+..|..+++|++|++++|.+..+ |..+.++++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4678889998888776654 45678999999988765 456667889999999999999998877 456788999999
Q ss_pred EEeccccccccCcc-hhcccCCCEEEcCCCccccccc-cccccccCcEEEccccccccCccCCchhhhhcc---------
Q 005181 456 LSVKNTEVKIIPKS-IRNLLSLEILDLKNTLVSELPV-EIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSL--------- 524 (710)
Q Consensus 456 L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l--------- 524 (710)
|++++|.++.+|.. |.++++|++|++++|.+..+++ .+..+++|++|++++ |.+++........+..+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVDLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccccccccccceeecccccccc
Confidence 99999999988877 5889999999999998877755 588899999999984 55554322111000000
Q ss_pred CCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccE
Q 005181 525 SSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQK 603 (710)
Q Consensus 525 ~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 603 (710)
...+.+|+.|++++| +..+|.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred cCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 022346788888877 5555542 357899999999998874 57889999999999999998887888899999999
Q ss_pred EEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEE
Q 005181 604 LLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVT 683 (710)
Q Consensus 604 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~ 683 (710)
|+|++|.+.+ +|..+..+++|+.|++++|++. .+|..+..+++|+.|++++| . +..+| ..
T Consensus 277 L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N--------------~-i~~~~---~~ 336 (390)
T 3o6n_A 277 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN--------------S-IVTLK---LS 336 (390)
T ss_dssp EECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS--------------C-CCCCC---CC
T ss_pred EECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCC--------------c-cceeC---ch
Confidence 9999998655 5667788999999999999876 67878888999999999853 3 33455 33
Q ss_pred EEeCCeeeEeehhhhcc
Q 005181 684 FLAAGRVFQYRKDILSS 700 (710)
Q Consensus 684 ~~~~l~~l~l~~N~l~~ 700 (710)
.++.|+.|++++|.++.
T Consensus 337 ~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TTCCCSEEECCSSCEEH
T ss_pred hhccCCEEEcCCCCccc
Confidence 45789999999999984
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=6.2e-26 Score=236.70 Aligned_cols=269 Identities=13% Similarity=0.128 Sum_probs=197.4
Q ss_pred cccCCceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceE
Q 005181 376 LSRCSKTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHY 455 (710)
Q Consensus 376 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~ 455 (710)
+..+++++++.+..+.+...+....+++|+.|.+.++.... + ..+..+++|++|++++|.+..++. +..+++|+.
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--I--SALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--C--GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--c--hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 44566788888877777666556777788888887775422 2 357777888888888887776655 667777777
Q ss_pred EEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCc-hh-------------hh
Q 005181 456 LSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPA-EA-------------VA 521 (710)
Q Consensus 456 L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~-~~-------------~~ 521 (710)
|++++|.....+..+..+++|++|++++|.+..++. +..+++|++|++++ |.+++...-. .. ..
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY-NQIEDISPLASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT-SCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC-CcccccccccCCCccceeecccCCCCCC
Confidence 777777544333346666777777777666666654 66666666666663 3333222100 00 00
Q ss_pred hccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCc
Q 005181 522 KSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPK 600 (710)
Q Consensus 522 ~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 600 (710)
.. ...+++|+.|++++| +..++. +..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+. ..+..+++
T Consensus 215 ~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~ 288 (347)
T 4fmz_A 215 TP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQ 288 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred ch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCC
Confidence 01 234468999999999 777776 88999999999999999874 5688999999999999998875 35788999
Q ss_pred ccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcH
Q 005181 601 LQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVK 659 (710)
Q Consensus 601 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~ 659 (710)
|+.|++++|.+.+..+..+..+++|+.|++++|++.+..| +..+++|+.|++++|+.
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 9999999999988888888899999999999999876555 88999999999997653
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=6.5e-27 Score=253.82 Aligned_cols=282 Identities=16% Similarity=0.094 Sum_probs=223.2
Q ss_pred CCccccCCceeEEEEEccCccc-cc--ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCcc-Cccc--
Q 005181 373 GVDLSRCSKTRRIAIQRSIDDG-AL--ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDY-LPEG-- 446 (710)
Q Consensus 373 ~~~~~~~~~~r~l~l~~~~~~~-~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-l~~~-- 446 (710)
...+....+++.+.+..+.... .+ ....+++|+.|.+.++.. ....+..|.++++|++|++++|.++. ++..
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 124 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF--LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT--CEECTTTTTTCTTCCEEECTTSCCBTHHHHSST
T ss_pred hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc--CccChhhccCcccCCEEeCCCCCCCccccCccc
Confidence 4456677889999999887752 21 256789999999998876 45567789999999999999999884 3433
Q ss_pred ccCcccceEEEecccccccc-Ccc-hhcccCCCEEEcCCCccccccc-cccc----------------------------
Q 005181 447 VGNLFNLHYLSVKNTEVKII-PKS-IRNLLSLEILDLKNTLVSELPV-EIRN---------------------------- 495 (710)
Q Consensus 447 ~~~l~~L~~L~l~~n~i~~l-p~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~---------------------------- 495 (710)
+.++++|++|++++|.++.+ |.. +.++++|++|++++|.+..+++ .+..
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~ 204 (455)
T 3v47_A 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204 (455)
T ss_dssp TTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred ccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccc
Confidence 88899999999999999955 555 8899999999999988766533 3333
Q ss_pred ------cccCcEEEccccccccCccCCchhhh------hc-------------------------cCC-CCcCccEEEEe
Q 005181 496 ------LKKLRYLMVYRYNYTTGSIMPAEAVA------KS-------------------------LSS-PPQYLQRLYLM 537 (710)
Q Consensus 496 ------l~~L~~L~l~~~n~~~~~~~~~~~~~------~~-------------------------l~~-~~~~L~~L~L~ 537 (710)
+++|++|++++ |.+++..+...... .. +.. ..++|+.|+++
T Consensus 205 ~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (455)
T 3v47_A 205 CGNPFKNTSITTLDLSG-NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283 (455)
T ss_dssp HCCTTTTCEEEEEECTT-SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECC
T ss_pred cccccccceeeeEecCC-CcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEec
Confidence 36788888884 55543322211000 00 000 12479999999
Q ss_pred ec-CCC-CCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceee
Q 005181 538 GN-MKK-LPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSV 615 (710)
Q Consensus 538 ~n-~~~-ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 615 (710)
+| +.. .|..+..+++|+.|++++|.+++..+..|+.+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+.+..
T Consensus 284 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred CccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence 99 443 5778899999999999999999988889999999999999999998877778899999999999999998888
Q ss_pred eecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecC
Q 005181 616 IIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 616 ~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 657 (710)
|..+..+++|+.|++++|++.+..+..+..+++|+.|++++|
T Consensus 364 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 889999999999999999988655566899999999999954
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=2.5e-26 Score=237.68 Aligned_cols=290 Identities=13% Similarity=0.049 Sum_probs=193.3
Q ss_pred ceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC-cccccCcccceEEEec
Q 005181 381 KTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVK 459 (710)
Q Consensus 381 ~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~ 459 (710)
+++.+.+........+. .-.+.++.|.+.++.. ....+..|.++++|++|++++|.++.+ |..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~-~~~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCc-cCCCCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 35556555555544432 2346778888777765 345555778888888888888888766 6778888888888888
Q ss_pred cccccccCcchhcccCCCEEEcCCCccccccc-cccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEee
Q 005181 460 NTEVKIIPKSIRNLLSLEILDLKNTLVSELPV-EIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMG 538 (710)
Q Consensus 460 ~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~ 538 (710)
+|.++.+|..+. ++|++|++++|.+..++. .+.++++|++|++++ |.++..... ...+...++|+.|++++
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~-----~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIE-----NGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS-SCCCGGGBC-----TTGGGGCTTCCEEECCS
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCC-CcCCccCcC-----hhhccCCCCcCEEECCC
Confidence 888887776654 678888888887777765 367788888888874 444321110 01222334788888888
Q ss_pred c-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeee
Q 005181 539 N-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVII 617 (710)
Q Consensus 539 n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 617 (710)
| +..+|..+. ++|+.|++++|.+++..+..|..+++|+.|++++|.+....+..+..+++|+.|+|++|.+. .+|.
T Consensus 181 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 181 TNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp SCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred CccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence 7 666776543 77888888888887776777788888888888888777665555677788888888888755 5666
Q ss_pred cCCcCCCccEEEEccCCCCCCCcccccc------CCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeee
Q 005181 618 EKGAMPDIRELEIGPCPLLMEIPIGIEH------LRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVF 691 (710)
Q Consensus 618 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~------l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l 691 (710)
.+..+++|+.|++++|++.+..+..+.. .+.|+.|++++|+. ... .++...|..+..++.+
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~------------~~~-~i~~~~f~~~~~l~~l 324 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV------------QYW-EIQPSTFRCVYVRAAV 324 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS------------CGG-GSCGGGGTTCCCGGGE
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc------------ccc-ccCccccccccceeEE
Confidence 7777888888888888876544444432 36777788876553 111 2333334444677777
Q ss_pred Eeehhh
Q 005181 692 QYRKDI 697 (710)
Q Consensus 692 ~l~~N~ 697 (710)
++++|+
T Consensus 325 ~L~~N~ 330 (330)
T 1xku_A 325 QLGNYK 330 (330)
T ss_dssp EC----
T ss_pred EecccC
Confidence 777774
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1.7e-26 Score=239.17 Aligned_cols=288 Identities=13% Similarity=0.063 Sum_probs=214.7
Q ss_pred ceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC-cccccCcccceEEEec
Q 005181 381 KTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVK 459 (710)
Q Consensus 381 ~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~ 459 (710)
+++.+.+..+.....+. .-.++++.|.+.++.. ....+..|.++++|++|++++|.++.+ |..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCS-CCCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCC-CCCCCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 46677776666665533 3357889998888765 355667889999999999999998876 7788899999999999
Q ss_pred cccccccCcchhcccCCCEEEcCCCcccccccc-ccccccCcEEEccccccccCc-cCCchhhhhccCCCCcCccEEEEe
Q 005181 460 NTEVKIIPKSIRNLLSLEILDLKNTLVSELPVE-IRNLKKLRYLMVYRYNYTTGS-IMPAEAVAKSLSSPPQYLQRLYLM 537 (710)
Q Consensus 460 ~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~n~~~~~-~~~~~~~~~~l~~~~~~L~~L~L~ 537 (710)
+|.++.+|..+. ++|++|++++|.++.+|.. +.++++|++|++++ |.++.. ..+ ..+... +|+.|+++
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~------~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG-NPLENSGFEP------GAFDGL-KLNYLRIS 180 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS-CCCBGGGSCT------TSSCSC-CCSCCBCC
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC-CccccCCCCc------ccccCC-ccCEEECc
Confidence 999998887765 7899999999988888764 78899999999984 554321 111 122233 78889998
Q ss_pred ec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeee
Q 005181 538 GN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVI 616 (710)
Q Consensus 538 ~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 616 (710)
+| +..+|..+. ++|+.|++++|.++...+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .+|
T Consensus 181 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp 257 (332)
T 2ft3_A 181 EAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257 (332)
T ss_dssp SSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCC
T ss_pred CCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecC
Confidence 88 777877554 78889999999988887788888999999999999888776666788889999999988765 677
Q ss_pred ecCCcCCCccEEEEccCCCCCCCcccccc------CCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCee
Q 005181 617 IEKGAMPDIRELEIGPCPLLMEIPIGIEH------LRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRV 690 (710)
Q Consensus 617 ~~~~~l~~L~~L~l~~n~~~~~~p~~~~~------l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~ 690 (710)
..+..+++|+.|++++|++.+..+..+.. .++|+.|++++|+. .. ..++...|..++.|+.
T Consensus 258 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~------------~~-~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV------------PY-WEVQPATFRCVTDRLA 324 (332)
T ss_dssp TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS------------CG-GGSCGGGGTTBCCSTT
T ss_pred hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc------------cc-cccCcccccccchhhh
Confidence 77888899999999999887554445543 36788888886643 11 1344444444578888
Q ss_pred eEeehhh
Q 005181 691 FQYRKDI 697 (710)
Q Consensus 691 l~l~~N~ 697 (710)
+++++|+
T Consensus 325 l~l~~n~ 331 (332)
T 2ft3_A 325 IQFGNYK 331 (332)
T ss_dssp EEC----
T ss_pred hhccccc
Confidence 8888874
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=260.54 Aligned_cols=304 Identities=16% Similarity=0.091 Sum_probs=221.2
Q ss_pred cCCceeEEEEEccCccccc--ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC-cccccCcccce
Q 005181 378 RCSKTRRIAIQRSIDDGAL--ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLH 454 (710)
Q Consensus 378 ~~~~~r~l~l~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~ 454 (710)
.+++++++.+..+.+.... ....+++|+.|.+.++.. ...+.+..|.++++|++|+|++|.+..+ |..|.++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 4578999999998887643 467789999999998855 3455578899999999999999999876 88899999999
Q ss_pred EEEecccccc-ccCcc--hhcccCCCEEEcCCCcccccc--ccccccccCcEEEccccccccCccCCchhhhh--cc---
Q 005181 455 YLSVKNTEVK-IIPKS--IRNLLSLEILDLKNTLVSELP--VEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAK--SL--- 524 (710)
Q Consensus 455 ~L~l~~n~i~-~lp~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~--~l--- 524 (710)
+|+|++|.++ .+|.. +.++++|++|+|++|.+..++ ..|+++++|++|++++ |.+++..+.....+. .+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGGHHHHHCSSCCC
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC-CcCCeeCHHHcccccCCccceE
Confidence 9999999998 35554 889999999999999887663 4689999999999984 666554433221110 00
Q ss_pred --------------CCCC------cCccEEEEeec--CCCCCcccc----------------------------------
Q 005181 525 --------------SSPP------QYLQRLYLMGN--MKKLPDWIF---------------------------------- 548 (710)
Q Consensus 525 --------------~~~~------~~L~~L~L~~n--~~~ip~~~~---------------------------------- 548 (710)
...+ .+|+.|++++| ...+|..+.
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 0000 13777777776 222332221
Q ss_pred --C--CCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCC
Q 005181 549 --K--LENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPD 624 (710)
Q Consensus 549 --~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~ 624 (710)
. .++|+.|++++|.++...+..|..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+.+..+..+..+++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 1 256778888888777777777788888888888888877766667777888888888888777766777788888
Q ss_pred ccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcH
Q 005181 625 IRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSP 703 (710)
Q Consensus 625 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~ 703 (710)
|+.|++++|.+....+..+.++++|+.|++++| . +..+|. ++.|+.+++++|.++.+|.
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N--------------~-l~~i~~-----~~~L~~L~l~~N~l~~l~~ 398 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN--------------A-LTTIHF-----IPSIPDIFLSGNKLVTLPK 398 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC--------------C-SCCCSS-----CCSCSEEEEESCCCCCCCC
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCC--------------C-CCcccC-----CCCcchhccCCCCcccccc
Confidence 888888888876555666778888888888743 2 234443 3667777777777766654
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.3e-25 Score=243.90 Aligned_cols=302 Identities=18% Similarity=0.161 Sum_probs=194.2
Q ss_pred cccCCceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceE
Q 005181 376 LSRCSKTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHY 455 (710)
Q Consensus 376 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~ 455 (710)
+..+.+++++.+..+.+...++...+++|+.|.+.++... ...+ +.++++|++|++++|.++.++. +.++++|++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~--~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNR 138 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccc--cChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCE
Confidence 4456788888888888877666777888888888877652 2232 7888888888888888887764 778888888
Q ss_pred EEeccccccccCc--------------------chhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccC
Q 005181 456 LSVKNTEVKIIPK--------------------SIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIM 515 (710)
Q Consensus 456 L~l~~n~i~~lp~--------------------~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~ 515 (710)
|++++|.++.++. .+.++++|++|++++|.+..++ .+..+++|++|++++ |.+++..+
T Consensus 139 L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~-n~l~~~~~ 216 (466)
T 1o6v_A 139 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATN-NQISDITP 216 (466)
T ss_dssp EEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG
T ss_pred EECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecC-Cccccccc
Confidence 8888888775542 2445566666777766666654 366677777777763 44443321
Q ss_pred CchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEe
Q 005181 516 PAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFE 594 (710)
Q Consensus 516 ~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 594 (710)
...+++|+.|++++| +..++ .+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+....+
T Consensus 217 ---------~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-- 282 (466)
T 1o6v_A 217 ---------LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 282 (466)
T ss_dssp ---------GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--
T ss_pred ---------ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--
Confidence 122346677777666 44443 45666677777777776665433 5666677777777666655433
Q ss_pred cCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHh--------cc
Q 005181 595 AGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYM--------TK 666 (710)
Q Consensus 595 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~--------~~ 666 (710)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..| +..+++|+.|++++|...-... ..
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 358 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 358 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEE
Confidence 5566666666666666554333 4566666666666666654433 5566666666666653211110 11
Q ss_pred cCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcHHH
Q 005181 667 DENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPEY 705 (710)
Q Consensus 667 ~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~~ 705 (710)
++++|++.+..| +..++.|+.|++++|.++.+|...
T Consensus 359 ~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 359 SAGHNQISDLTP---LANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp ECCSSCCCBCGG---GTTCTTCCEEECCCEEEECCCBCC
T ss_pred eCCCCccCccch---hhcCCCCCEEeccCCcccCCchhh
Confidence 144666666665 344578888889888888876543
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.8e-26 Score=253.60 Aligned_cols=292 Identities=15% Similarity=0.155 Sum_probs=210.9
Q ss_pred CceeEEEEEccCcccccc--cCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCc-ccccCcccceEE
Q 005181 380 SKTRRIAIQRSIDDGALE--SIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYL 456 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L 456 (710)
.+++.+.+..+.....+. ...+++|+.|.+.++.. ....+..|..+++|++|+|++|.+..+| ..|+++++|++|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456677776666655543 34567777777776654 3455556777777777777777777663 445777777777
Q ss_pred EeccccccccCcc-hhcccCCCEEEcCCCccccccc-cccccccCcEEEccccccccCccCCchhh----------hhcc
Q 005181 457 SVKNTEVKIIPKS-IRNLLSLEILDLKNTLVSELPV-EIRNLKKLRYLMVYRYNYTTGSIMPAEAV----------AKSL 524 (710)
Q Consensus 457 ~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~n~~~~~~~~~~~~----------~~~l 524 (710)
++++|.++.+|.. |.++++|++|+|++|.+..+++ .+.++++|++|++++ |.+++........ +..+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVDLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcChhhhhhhhhhhcccCccccc
Confidence 7777777766665 4777777777777777666654 467777777777773 4444432211100 0011
Q ss_pred CCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccE
Q 005181 525 SSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQK 603 (710)
Q Consensus 525 ~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 603 (710)
..+.+|+.|++++| +..+|..+ .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+.+..|..+..+++|+.
T Consensus 208 -~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 208 -AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp -ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred -cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 22347888888887 55555433 3689999999999987 467889999999999999999888888999999999
Q ss_pred EEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEE
Q 005181 604 LLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVT 683 (710)
Q Consensus 604 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~ 683 (710)
|+|++|.+.+ +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++| ++ ..+| +.
T Consensus 283 L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N--------------~l-~~~~---~~ 342 (597)
T 3oja_B 283 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN--------------SI-VTLK---LS 342 (597)
T ss_dssp EECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS--------------CC-CCCC---CC
T ss_pred EECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC--------------CC-CCcC---hh
Confidence 9999998765 6777788999999999999987 68888899999999999853 33 3444 23
Q ss_pred EEeCCeeeEeehhhhc
Q 005181 684 FLAAGRVFQYRKDILS 699 (710)
Q Consensus 684 ~~~~l~~l~l~~N~l~ 699 (710)
.++.|+.|++++|.++
T Consensus 343 ~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 343 THHTLKNLTLSHNDWD 358 (597)
T ss_dssp TTCCCSEEECCSSCEE
T ss_pred hcCCCCEEEeeCCCCC
Confidence 3478999999999987
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=9.7e-26 Score=253.88 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=135.3
Q ss_pred cCccEEEEeec-CCCC-C-ccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCc-eeEEecCCCCcccEE
Q 005181 529 QYLQRLYLMGN-MKKL-P-DWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYE-LFHFEAGWFPKLQKL 604 (710)
Q Consensus 529 ~~L~~L~L~~n-~~~i-p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L 604 (710)
++|+.|++++| +..+ | ..+..+++|+.|++++|.+++..+..++.+++|+.|++++|.+.+ ..|..+..+++|+.|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 46667777766 3333 3 467888999999999999888888899999999999999999887 467788999999999
Q ss_pred EeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEE
Q 005181 605 LLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTF 684 (710)
Q Consensus 605 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~ 684 (710)
++++|.+.+..|..+..+++|+.|++++|++.+..|..+.++++|+.|++++ |+ +..+|..+...
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~--------------N~-l~~~p~~~~~l 543 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF--------------NR-IETSKGILQHF 543 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT--------------SC-CCCEESCGGGS
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC--------------Cc-CcccCHhHhhh
Confidence 9999999988888899999999999999999988899999999999999984 34 44788874444
Q ss_pred EeCCeeeEeehhhhc-cCcHHHH
Q 005181 685 LAAGRVFQYRKDILS-SLSPEYV 706 (710)
Q Consensus 685 ~~~l~~l~l~~N~l~-~~~~~~~ 706 (710)
.+.|+.+++++|.+. ..+..++
T Consensus 544 ~~~L~~l~l~~N~~~c~c~~~~~ 566 (606)
T 3vq2_A 544 PKSLAFFNLTNNSVACICEHQKF 566 (606)
T ss_dssp CTTCCEEECCSCCCCCSSTTHHH
T ss_pred cccCcEEEccCCCcccCCccHHH
Confidence 235999999999998 4554443
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=7.1e-26 Score=249.95 Aligned_cols=306 Identities=16% Similarity=0.125 Sum_probs=200.4
Q ss_pred ccccCCceeEEEEEccCccccc--ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCcc--CcccccCc
Q 005181 375 DLSRCSKTRRIAIQRSIDDGAL--ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDY--LPEGVGNL 450 (710)
Q Consensus 375 ~~~~~~~~r~l~l~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--l~~~~~~l 450 (710)
.+...++++++.+..+.+.... ....+++|+.|.+.++... .++ .. .+++|++|++++|.++. +|..++++
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp-~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV--KIS-CH--PTVNLKHLDLSFNAFDALPICKEFGNM 114 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC--EEE-CC--CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee--ecC-cc--ccCCccEEeccCCccccccchhhhccC
Confidence 4556788999999999987653 3677899999999998763 333 33 89999999999999985 57899999
Q ss_pred ccceEEEeccccccccCcchhcccCC--CEEEcCCCcc---ccccccccc------------------------------
Q 005181 451 FNLHYLSVKNTEVKIIPKSIRNLLSL--EILDLKNTLV---SELPVEIRN------------------------------ 495 (710)
Q Consensus 451 ~~L~~L~l~~n~i~~lp~~~~~l~~L--~~L~l~~n~~---~~~~~~~~~------------------------------ 495 (710)
++|++|++++|.++. ..+..+++| ++|++++|.+ ...|..+..
T Consensus 115 ~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L 192 (520)
T 2z7x_B 115 SQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192 (520)
T ss_dssp TTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred CcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence 999999999999875 246666666 7777776654 222222222
Q ss_pred --------------------------c---------------------------ccCcEEEccccccccCccCCch----
Q 005181 496 --------------------------L---------------------------KKLRYLMVYRYNYTTGSIMPAE---- 518 (710)
Q Consensus 496 --------------------------l---------------------------~~L~~L~l~~~n~~~~~~~~~~---- 518 (710)
+ ++|++|++++ +.+++..+...
T Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~p~~~~~~~ 271 (520)
T 2z7x_B 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN-VKLQGQLDFRDFDYS 271 (520)
T ss_dssp EECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE-EEEESCCCCCCCCCC
T ss_pred eeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec-ccccCccccchhhcc
Confidence 1 1455555542 33333322211
Q ss_pred -h--------------------hhhcc---------------------CCCCcCccEEEEeec-CC-CCCccccCCCCcc
Q 005181 519 -A--------------------VAKSL---------------------SSPPQYLQRLYLMGN-MK-KLPDWIFKLENLI 554 (710)
Q Consensus 519 -~--------------------~~~~l---------------------~~~~~~L~~L~L~~n-~~-~ip~~~~~l~~L~ 554 (710)
. .+..+ ...+++|++|++++| +. .+|..+..+++|+
T Consensus 272 ~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 351 (520)
T 2z7x_B 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351 (520)
T ss_dssp SCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred cccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence 0 00000 023346666666666 33 3566666677777
Q ss_pred EEEEEeeccCC--ccccccccccccceEEeecccCCc-eeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEc
Q 005181 555 RLGLELSGLAE--EPIRVLQASPNLLELRLTGTYDYE-LFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIG 631 (710)
Q Consensus 555 ~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 631 (710)
.|++++|.+++ ..|..++.+++|+.|++++|.+.. .....+..+++|+.|++++|.+.+..|..+. ++|+.|+++
T Consensus 352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls 429 (520)
T 2z7x_B 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH 429 (520)
T ss_dssp EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence 77777776665 234556667777777777776665 3333355666777777777766555544432 577777777
Q ss_pred cCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhcc-CcHHHH
Q 005181 632 PCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSS-LSPEYV 706 (710)
Q Consensus 632 ~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~-~~~~~~ 706 (710)
+|.+. .+|..+..+++|++|+++ +|+ +..+|...+..++.|+.+++++|.++. .+..++
T Consensus 430 ~N~l~-~ip~~~~~l~~L~~L~L~--------------~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 430 SNKIK-SIPKQVVKLEALQELNVA--------------SNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECC--------------SSC-CCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred CCccc-ccchhhhcCCCCCEEECC--------------CCc-CCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 77765 667666677777777776 434 447887755556899999999999984 443444
No 34
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.7e-25 Score=230.34 Aligned_cols=231 Identities=19% Similarity=0.256 Sum_probs=200.4
Q ss_pred CcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCC
Q 005181 449 NLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPP 528 (710)
Q Consensus 449 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~ 528 (710)
..++++.|++++|.++.+|+.+.++++|++|+|++|.+..+|..+.++++|++|++++ |.++ ..+. . ....
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~-~lp~------~-l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR-NPLR-ALPA------S-IASL 149 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEES-CCCC-CCCG------G-GGGC
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCC-Cccc-cCcH------H-HhcC
Confidence 3578999999999999999999999999999999999999999999999999999995 5665 2332 2 2334
Q ss_pred cCccEEEEeec--CCCCCccccC---------CCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCC
Q 005181 529 QYLQRLYLMGN--MKKLPDWIFK---------LENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGW 597 (710)
Q Consensus 529 ~~L~~L~L~~n--~~~ip~~~~~---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 597 (710)
++|+.|+|++| .+.+|..+.. +++|+.|+|++|.++ ..|..++.+++|+.|+|++|.+.+. +..+..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-chhhcc
Confidence 59999999997 6778876654 999999999999998 4677899999999999999999875 446889
Q ss_pred CCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCc
Q 005181 598 FPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHI 677 (710)
Q Consensus 598 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~i 677 (710)
+++|+.|+|++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.++++|+.|+++ +|++.+.+
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~--------------~n~~~~~i 293 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR--------------GCVNLSRL 293 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT--------------TCTTCCCC
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC--------------CCCchhhc
Confidence 9999999999999999999999999999999999999999999999999999999999 55789999
Q ss_pred CeEEEEEEeCCeeeEeehhhhccCcHHH
Q 005181 678 PDVLVTFLAAGRVFQYRKDILSSLSPEY 705 (710)
Q Consensus 678 p~~~~~~~~~l~~l~l~~N~l~~~~~~~ 705 (710)
|..+... +.++.+++..|.+..++...
T Consensus 294 P~~l~~L-~~L~~l~l~~~~~~~l~~~~ 320 (328)
T 4fcg_A 294 PSLIAQL-PANCIILVPPHLQAQLDQHR 320 (328)
T ss_dssp CGGGGGS-CTTCEEECCGGGSCC-----
T ss_pred cHHHhhc-cCceEEeCCHHHHHHHhhhh
Confidence 9988776 89999999999888776543
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=5.8e-26 Score=252.58 Aligned_cols=172 Identities=15% Similarity=0.091 Sum_probs=83.3
Q ss_pred ccEEEEeec-CCCCCccc-cCCCCccEEEEEeeccCCccc---cccccccccceEEeecccCCceeE--EecCCCCcccE
Q 005181 531 LQRLYLMGN-MKKLPDWI-FKLENLIRLGLELSGLAEEPI---RVLQASPNLLELRLTGTYDYELFH--FEAGWFPKLQK 603 (710)
Q Consensus 531 L~~L~L~~n-~~~ip~~~-~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~ 603 (710)
|+.|++++| +..+|..+ ..+++|+.|++++|.+++..+ ..++.+++|+.|++++|.+....+ ..+..+++|+.
T Consensus 312 L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391 (549)
T ss_dssp CCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCE
T ss_pred ceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCE
Confidence 444444444 34444433 345555555555555544332 224455555555555555544321 22445555555
Q ss_pred EEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHH----HH--hcccCCcCccccCc
Q 005181 604 LLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQV----YY--MTKDENWGKVTEHI 677 (710)
Q Consensus 604 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~----~~--~~~~~~~n~~~~~i 677 (710)
|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+. ++|+.|++++|...- .. ...++++|++ ..+
T Consensus 392 L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l-~~i 466 (549)
T 2z81_A 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL-KTL 466 (549)
T ss_dssp EECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCCCCCTTCCEEECCSSCC-SSC
T ss_pred EECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhcccCChhcEEECCCCcc-CcC
Confidence 555555443 34444555555555555555543 2222211 233333333331100 00 0112445444 367
Q ss_pred CeEEEEEEeCCeeeEeehhhhccCcHHHHhhc
Q 005181 678 PDVLVTFLAAGRVFQYRKDILSSLSPEYVEQI 709 (710)
Q Consensus 678 p~~~~~~~~~l~~l~l~~N~l~~~~~~~~~~~ 709 (710)
|.. ..++.|+.|++++|.++.++++.+.++
T Consensus 467 p~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l 496 (549)
T 2z81_A 467 PDA--SLFPVLLVMKISRNQLKSVPDGIFDRL 496 (549)
T ss_dssp CCG--GGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred CCc--ccCccCCEEecCCCccCCcCHHHHhcC
Confidence 763 235778888888888888887776654
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=3e-25 Score=258.46 Aligned_cols=290 Identities=16% Similarity=0.099 Sum_probs=190.8
Q ss_pred EccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCC-CccC-cccccCcccceEEEeccccccc
Q 005181 388 QRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAP-VDYL-PEGVGNLFNLHYLSVKNTEVKI 465 (710)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~l-~~~~~~l~~L~~L~l~~n~i~~ 465 (710)
..+.....|. -.++++.|.+.++.. ....+..|.++++|++|+|++|. +..+ |..|.++++|++|+|++|.++.
T Consensus 12 s~~~L~~vP~--lp~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 12 RFCNLTQVPQ--VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp SCCCSSCCCS--SCTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred cCCCCCCCCC--CCCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 3344444444 568999999999876 45667889999999999999995 4466 7889999999999999999995
Q ss_pred c-CcchhcccCCCEEEcCCCcccc-cccc--ccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-C
Q 005181 466 I-PKSIRNLLSLEILDLKNTLVSE-LPVE--IRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-M 540 (710)
Q Consensus 466 l-p~~~~~l~~L~~L~l~~n~~~~-~~~~--~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~ 540 (710)
+ |..|.++++|++|+|++|.+.. +|.. +.++++|++|++++ |.+++..++ ..+...++|+.|+|++| +
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~-N~l~~~~~~------~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK-NQIRSLYLH------PSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES-CCCCCCCCC------GGGGTCSSCCEEEEESSCC
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCC-Ccccccccc------hhHhhCCCCCEEECCCCcC
Confidence 5 7789999999999999998865 5554 89999999999994 666655443 22334458888888888 4
Q ss_pred CC-CCccccCC--CCccEEEEEeeccCCccccccccccc------cceEEeecc--------------------------
Q 005181 541 KK-LPDWIFKL--ENLIRLGLELSGLAEEPIRVLQASPN------LLELRLTGT-------------------------- 585 (710)
Q Consensus 541 ~~-ip~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n-------------------------- 585 (710)
.. .|..+..+ ++|+.|++++|.+++..+..++.+++ |+.|++++|
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 33 45555544 66666666666665544444444333 555555554
Q ss_pred ------------------------------------cCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEE
Q 005181 586 ------------------------------------YDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELE 629 (710)
Q Consensus 586 ------------------------------------~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 629 (710)
.+....+..+..+++|+.|+|++|.+.+..+..+..+++|+.|+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 44333333344444444444444444444444444444444444
Q ss_pred EccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcH
Q 005181 630 IGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSP 703 (710)
Q Consensus 630 l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~ 703 (710)
+++|.+.+..|..+..+++|+.|+++ +|+ ++.+|...+..++.|+.|++++|.++.++.
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~--------------~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQ--------------KNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECC--------------SCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECC--------------CCC-CCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence 44444443334444444444444444 433 455555555556888888888888887653
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-25 Score=237.92 Aligned_cols=281 Identities=17% Similarity=0.133 Sum_probs=201.6
Q ss_pred ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCc-ccccCcccceEEEeccccccccCc-chhccc
Q 005181 397 ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTEVKIIPK-SIRNLL 474 (710)
Q Consensus 397 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~ 474 (710)
.....++++.+.+.++.. ..+++..|..+++|++|++++|.++.++ ..+.++++|++|++++|.++.+|+ .+.+++
T Consensus 40 ~~~~l~~l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 40 EDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp SSGGGCCCSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccccCCceEEEecCCch--hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 455678999999988765 4566777899999999999999999875 589999999999999999996654 489999
Q ss_pred CCCEEEcCCCcccccccc-ccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCC
Q 005181 475 SLEILDLKNTLVSELPVE-IRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLEN 552 (710)
Q Consensus 475 ~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~ 552 (710)
+|++|++++|.++.+|.. +.++++|++|++++ |.+++..+. .+...++|+.|++++| +..++ +..+++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~--~~~l~~ 187 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDD-------TFQATTSLQNLQLSSNRLTHVD--LSLIPS 187 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTT-------TTSSCTTCCEEECCSSCCSBCC--GGGCTT
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChh-------hccCCCCCCEEECCCCcCCccc--cccccc
Confidence 999999999999999987 58999999999994 666554432 2344468999999998 55554 355666
Q ss_pred ccEEEEEeeccCCccc-cc---------------cccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeee
Q 005181 553 LIRLGLELSGLAEEPI-RV---------------LQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVI 616 (710)
Q Consensus 553 L~~L~L~~n~l~~~~~-~~---------------l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 616 (710)
|+.|++++|.++.... .. ....++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|
T Consensus 188 L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 188 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp CSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred cceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 6666666665543110 00 01234566666666655543 245566777777777777666666
Q ss_pred ecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehh
Q 005181 617 IEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKD 696 (710)
Q Consensus 617 ~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N 696 (710)
..+..+++|+.|++++|.+. .+|..+..+++|+.|+++ +| .+..+|..+.. ++.|+.|++++|
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~--------------~n-~l~~~~~~~~~-l~~L~~L~L~~N 328 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS--------------HN-HLLHVERNQPQ-FDRLENLYLDHN 328 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECC--------------SS-CCCCCGGGHHH-HTTCSEEECCSS
T ss_pred hHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECC--------------CC-cceecCccccc-cCcCCEEECCCC
Confidence 66677777777777777654 355556667777777776 33 33466666544 378888888888
Q ss_pred hhccCcHHHHhh
Q 005181 697 ILSSLSPEYVEQ 708 (710)
Q Consensus 697 ~l~~~~~~~~~~ 708 (710)
.++.++...+.+
T Consensus 329 ~i~~~~~~~~~~ 340 (390)
T 3o6n_A 329 SIVTLKLSTHHT 340 (390)
T ss_dssp CCCCCCCCTTCC
T ss_pred ccceeCchhhcc
Confidence 888877554443
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.5e-25 Score=250.81 Aligned_cols=282 Identities=17% Similarity=0.139 Sum_probs=208.0
Q ss_pred ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCc-ccccCcccceEEEeccccccccCcc-hhccc
Q 005181 397 ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTEVKIIPKS-IRNLL 474 (710)
Q Consensus 397 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~ 474 (710)
.....+.++.+.+.++.. ..+++..|..+++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+|+. |++++
T Consensus 46 ~~l~l~~l~~l~l~~~~l--~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 46 EDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp SSGGGCCCSEEEESSCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccccCCCceEEEeeCCCC--CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 345567889999888765 4667778999999999999999999774 5899999999999999999976655 79999
Q ss_pred CCCEEEcCCCcccccccc-ccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCC
Q 005181 475 SLEILDLKNTLVSELPVE-IRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLEN 552 (710)
Q Consensus 475 ~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~ 552 (710)
+|++|+|++|.++.+|+. |.++++|++|+++ +|.+++..+. .+..+++|+.|+|++| +..++ +..+++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~~~~~-------~~~~l~~L~~L~L~~N~l~~~~--~~~l~~ 193 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDD-------TFQATTSLQNLQLSSNRLTHVD--LSLIPS 193 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTT-------TTTTCTTCCEEECTTSCCSBCC--GGGCTT
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEee-CCcCCCCChh-------hhhcCCcCcEEECcCCCCCCcC--hhhhhh
Confidence 999999999999999886 5899999999999 4666665543 2344458999999998 55554 345666
Q ss_pred ccEEEEEeeccCCcccc-c---------------cccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeee
Q 005181 553 LIRLGLELSGLAEEPIR-V---------------LQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVI 616 (710)
Q Consensus 553 L~~L~L~~n~l~~~~~~-~---------------l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 616 (710)
|+.|++++|.+++.... . ....++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..|
T Consensus 194 L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp CSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred hhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCH
Confidence 66666666655431100 0 00124566666666666542 345667778888888887777777
Q ss_pred ecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehh
Q 005181 617 IEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKD 696 (710)
Q Consensus 617 ~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N 696 (710)
..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++ |. +..+|..+.. ++.|+.|++++|
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~--------------N~-l~~i~~~~~~-l~~L~~L~L~~N 334 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH--------------NH-LLHVERNQPQ-FDRLENLYLDHN 334 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCS--------------SC-CCCCGGGHHH-HTTCSEEECCSS
T ss_pred HHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCC--------------CC-CCccCccccc-CCCCCEEECCCC
Confidence 77777888888888887765 3566667777888888873 33 3467776644 488999999999
Q ss_pred hhccCcHHHHhhc
Q 005181 697 ILSSLSPEYVEQI 709 (710)
Q Consensus 697 ~l~~~~~~~~~~~ 709 (710)
.++.++...+.++
T Consensus 335 ~l~~~~~~~~~~L 347 (597)
T 3oja_B 335 SIVTLKLSTHHTL 347 (597)
T ss_dssp CCCCCCCCTTCCC
T ss_pred CCCCcChhhcCCC
Confidence 9988875555443
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2.9e-25 Score=247.13 Aligned_cols=120 Identities=14% Similarity=0.158 Sum_probs=81.6
Q ss_pred CceeEEEEEccCccccc--ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEE
Q 005181 380 SKTRRIAIQRSIDDGAL--ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLS 457 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~ 457 (710)
++++++.+..+.+...+ ....+++|+.|.+.++.. ....+..|.++++|++|++++|.++.+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 56777777777776553 355677777777777755 345566777777888888888877777665 677788888
Q ss_pred ecccccccc--CcchhcccCCCEEEcCCCccccccccccccccC--cEEEcc
Q 005181 458 VKNTEVKII--PKSIRNLLSLEILDLKNTLVSELPVEIRNLKKL--RYLMVY 505 (710)
Q Consensus 458 l~~n~i~~l--p~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L--~~L~l~ 505 (710)
+++|.++.+ |..|.++++|++|++++|.+... .+..+++| ++|+++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLD 177 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEE
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEee
Confidence 887777754 35677777777777777766542 23444444 555555
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=8.3e-25 Score=237.45 Aligned_cols=260 Identities=18% Similarity=0.155 Sum_probs=174.6
Q ss_pred CCceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEEe
Q 005181 379 CSKTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSV 458 (710)
Q Consensus 379 ~~~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l 458 (710)
..+++.+.+..+.....+....+++++.|.+.++... ...+ +.++++|++|++++|.+..++. +.++++|++|++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT--DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccC--Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 3568899998888877766778999999999988752 3333 8999999999999999998876 899999999999
Q ss_pred ccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccC-Cch-------------hhhhcc
Q 005181 459 KNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIM-PAE-------------AVAKSL 524 (710)
Q Consensus 459 ~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~-~~~-------------~~~~~l 524 (710)
++|.++.++. +.++++|++|++++|.+..++. +..+++|++|+++ + .+.+..+ ... .....+
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~-~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l 195 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-N-QVTDLKPLANLTTLERLDISSNKVSDISVL 195 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEE-E-SCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecC-C-cccCchhhccCCCCCEEECcCCcCCCChhh
Confidence 9999998875 8999999999999998888764 6667777777664 2 2221110 000 000011
Q ss_pred CCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccE
Q 005181 525 SSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQK 603 (710)
Q Consensus 525 ~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 603 (710)
..+++|+.|++++| +..++. +..+++|+.|++++|.++.. ..+..+++|+.|++++|.+....+ +..+++|+.
T Consensus 196 -~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 269 (466)
T 1o6v_A 196 -AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269 (466)
T ss_dssp -GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred -ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCE
Confidence 12235555555555 333332 44555566666665555442 345566666666666666655433 566667777
Q ss_pred EEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecC
Q 005181 604 LLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 604 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 657 (710)
|++++|.+.+..+ +..+++|+.|++++|.+.+. +. +..+++|+.|++++|
T Consensus 270 L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 270 LKLGANQISNISP--LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFN 319 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSS
T ss_pred EECCCCccCcccc--ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCC
Confidence 7777766554333 56677777777777776543 32 667777777777765
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=250.78 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=71.8
Q ss_pred ccccCCceeEEEEEccCcccccc--cCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcc-cccCcc
Q 005181 375 DLSRCSKTRRIAIQRSIDDGALE--SIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLF 451 (710)
Q Consensus 375 ~~~~~~~~r~l~l~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~-~~~~l~ 451 (710)
.+...++++++.+..+.+...++ ...+++|+.|.+.++.. ....+..|.++++|++|++++|.++.++. .+++++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC--CccCHhhhcCccccccccccccccccCCCccccccc
Confidence 44556667777777666554432 44566777777766654 34445566677777777777777666643 466677
Q ss_pred cceEEEeccccccc--cCcchhcccCCCEEEcCCCccccc
Q 005181 452 NLHYLSVKNTEVKI--IPKSIRNLLSLEILDLKNTLVSEL 489 (710)
Q Consensus 452 ~L~~L~l~~n~i~~--lp~~~~~l~~L~~L~l~~n~~~~~ 489 (710)
+|++|++++|.++. +|..|.++++|++|++++|.+..+
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 77777777777663 566677777777777776665544
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=3.4e-25 Score=229.19 Aligned_cols=274 Identities=20% Similarity=0.174 Sum_probs=217.9
Q ss_pred CceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcc-cccCcccceEEEecccccccc-CcchhcccCCCEE
Q 005181 402 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTEVKII-PKSIRNLLSLEIL 479 (710)
Q Consensus 402 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L 479 (710)
++++.+.+.++.. ...|..+ .+++++|++++|.++.++. .+.++++|++|++++|.++.+ |..|..+++|++|
T Consensus 31 c~l~~l~~~~~~l---~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGL---EKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCC---CSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCeEEEecCCCc---cccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 3677777765543 1222222 2689999999999998854 789999999999999999966 7789999999999
Q ss_pred EcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CC---CCCccccCCCCccE
Q 005181 480 DLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MK---KLPDWIFKLENLIR 555 (710)
Q Consensus 480 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~---~ip~~~~~l~~L~~ 555 (710)
++++|.++.+|..+. ++|++|++++ |.+++..+ ..+...++|+.|++++| +. ..+..+..+++|+.
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHE-NEITKVRK-------SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCH-------HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred ECCCCcCCccChhhc--ccccEEECCC-CcccccCH-------hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 999999999988765 7999999994 55554432 22234459999999999 43 45678899999999
Q ss_pred EEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCC
Q 005181 556 LGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPL 635 (710)
Q Consensus 556 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 635 (710)
|++++|.++..+. .+ .++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 176 L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 176 IRIADTNITTIPQ-GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp EECCSSCCCSCCS-SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred EECCCCccccCCc-cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 9999999987543 33 27999999999999887777889999999999999998887777888999999999999997
Q ss_pred CCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEE------EeCCeeeEeehhhhc--cCcHHHHh
Q 005181 636 LMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTF------LAAGRVFQYRKDILS--SLSPEYVE 707 (710)
Q Consensus 636 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~------~~~l~~l~l~~N~l~--~~~~~~~~ 707 (710)
. .+|..+..+++|++|++++| .++.+|...|.. .+.+..+++++|.+. .+++..|.
T Consensus 253 ~-~lp~~l~~l~~L~~L~l~~N---------------~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 253 V-KVPGGLADHKYIQVVYLHNN---------------NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp S-SCCTTTTTCSSCCEEECCSS---------------CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred c-cCChhhccCCCcCEEECCCC---------------cCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 6 78989999999999999853 234455443321 267889999999997 47777776
Q ss_pred hc
Q 005181 708 QI 709 (710)
Q Consensus 708 ~~ 709 (710)
.+
T Consensus 317 ~~ 318 (330)
T 1xku_A 317 CV 318 (330)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=8e-25 Score=248.07 Aligned_cols=144 Identities=12% Similarity=0.087 Sum_probs=95.6
Q ss_pred CCCCccEEEEEeeccCCccccccccccccceEEeecccC-CceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccE
Q 005181 549 KLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYD-YELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRE 627 (710)
Q Consensus 549 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~-~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 627 (710)
.+++++.++++.|.+....+..+..+++|+.|++++|.. ....|..+..+++|+.|+|++|.+.+..|..+.++++|+.
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 344455555555555555555666667777777776653 3345556677777777777777777766777777777777
Q ss_pred EEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhc-cCcHHHH
Q 005181 628 LEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILS-SLSPEYV 706 (710)
Q Consensus 628 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~-~~~~~~~ 706 (710)
|+|++|++.+..|..+.++++|+.|+++ +|++.+..|..+....+.|+.|++++|.++ ...-.+|
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls--------------~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~ 588 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYS--------------LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 588 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECT--------------TSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHH
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECC--------------CCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHH
Confidence 7777777766666667777777777776 556666556555554467888888888886 3443333
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=3.6e-25 Score=229.12 Aligned_cols=273 Identities=18% Similarity=0.157 Sum_probs=217.8
Q ss_pred CceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC-cccccCcccceEEEecccccccc-CcchhcccCCCEE
Q 005181 402 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTEVKII-PKSIRNLLSLEIL 479 (710)
Q Consensus 402 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L 479 (710)
++++.+.+.++.. .. .|..+ .++|++|++++|.+..+ |..+.++++|++|++++|.++.+ |..|.++++|++|
T Consensus 33 c~l~~l~~~~~~l--~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGL--KA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCC--SS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred ccCCEEECCCCCc--cc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 3678888776654 22 22322 36899999999999977 56799999999999999999965 6679999999999
Q ss_pred EcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CC---CCCccccCCCCccE
Q 005181 480 DLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MK---KLPDWIFKLENLIR 555 (710)
Q Consensus 480 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~---~ip~~~~~l~~L~~ 555 (710)
++++|.++.+|..+. ++|++|+++ +|.++...+ ..+...++|+.|++++| +. ..|..+..+ +|+.
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~-~n~i~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIH-DNRIRKVPK-------GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECC-SSCCCCCCS-------GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred ECCCCcCCccCcccc--ccCCEEECC-CCccCccCH-------hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 999999999998765 899999999 466654332 22344569999999999 43 456677777 9999
Q ss_pred EEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCC
Q 005181 556 LGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPL 635 (710)
Q Consensus 556 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 635 (710)
|++++|.++..+ ..+. ++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 177 L~l~~n~l~~l~-~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 177 LRISEAKLTGIP-KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp CBCCSSBCSSCC-SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred EECcCCCCCccC-cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 999999998754 3332 7999999999999887777888999999999999998887777889999999999999997
Q ss_pred CCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEE------EeCCeeeEeehhhhc--cCcHHHHh
Q 005181 636 LMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTF------LAAGRVFQYRKDILS--SLSPEYVE 707 (710)
Q Consensus 636 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~------~~~l~~l~l~~N~l~--~~~~~~~~ 707 (710)
. .+|..+..+++|+.|++++| ++ +.+|...+.. ...++.+++++|.++ .+++.+|.
T Consensus 254 ~-~lp~~l~~l~~L~~L~l~~N--------------~l-~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 254 S-RVPAGLPDLKLLQVVYLHTN--------------NI-TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp C-BCCTTGGGCTTCCEEECCSS--------------CC-CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred e-ecChhhhcCccCCEEECCCC--------------CC-CccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 6 78988999999999999853 33 3444332221 356889999999998 78888877
Q ss_pred hc
Q 005181 708 QI 709 (710)
Q Consensus 708 ~~ 709 (710)
.+
T Consensus 318 ~l 319 (332)
T 2ft3_A 318 CV 319 (332)
T ss_dssp TB
T ss_pred cc
Confidence 64
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=6.5e-25 Score=236.27 Aligned_cols=275 Identities=14% Similarity=0.089 Sum_probs=146.6
Q ss_pred CCceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEEe
Q 005181 379 CSKTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSV 458 (710)
Q Consensus 379 ~~~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l 458 (710)
.++++++.+..+.+...+....+++++.|.+.++.... + .++.+++|++|++++|.++.++ ++++++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~--~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT--L---DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC--C---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe--E---ccccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 45566666666665554445556666666666665421 1 1566666666666666666554 556666666666
Q ss_pred ccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEee
Q 005181 459 KNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMG 538 (710)
Q Consensus 459 ~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~ 538 (710)
++|.++.+| +..+++|++|++++|.++.++ ++.+++|++|++++|..+.... ....++|+.|++++
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~----------~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD----------VTPQTQLTTLDCSF 179 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC----------CTTCTTCCEEECCS
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc----------cccCCcCCEEECCC
Confidence 666666554 566666666666666665553 5566666666666432322211 11123445555554
Q ss_pred c-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCC-------
Q 005181 539 N-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFV------- 610 (710)
Q Consensus 539 n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~------- 610 (710)
| +..+| +..+++|+.|++++|.+++. .++.+++|+.|++++|.+.+. | +..+++|+.|++++|.
T Consensus 180 n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~~ 251 (457)
T 3bz5_A 180 NKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDVS 251 (457)
T ss_dssp SCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCT
T ss_pred Cccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCHH
Confidence 4 33343 34444444444444444432 134444444444444444432 1 3344444444444444
Q ss_pred ------------------------CceeeeecCCcCCCccEEEEccCCCCCCCccc--------cccCCCCcEEEEecCc
Q 005181 611 ------------------------AVKSVIIEKGAMPDIRELEIGPCPLLMEIPIG--------IEHLRNLKLLRFDCMV 658 (710)
Q Consensus 611 ------------------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--------~~~l~~L~~L~l~~~~ 658 (710)
..+.+| ++.|++|+.|++++|...+.+|.. +.++++|+.|+++
T Consensus 252 ~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~--- 326 (457)
T 3bz5_A 252 TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN--- 326 (457)
T ss_dssp TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT---
T ss_pred HCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECC---
Confidence 333343 344566666666666555544421 2333444444443
Q ss_pred HHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCc
Q 005181 659 KQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLS 702 (710)
Q Consensus 659 ~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~ 702 (710)
+|++.+ +| +..++.|+.|++++|.|+.++
T Consensus 327 -----------~N~l~~-l~---l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 327 -----------NTELTE-LD---VSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp -----------TCCCSC-CC---CTTCTTCSEEECCSSCCCBCT
T ss_pred -----------CCcccc-cc---cccCCcCcEEECCCCCCCCcc
Confidence 545554 44 334588999999999998764
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.9e-24 Score=230.18 Aligned_cols=305 Identities=14% Similarity=0.106 Sum_probs=194.0
Q ss_pred cccCCceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceE
Q 005181 376 LSRCSKTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHY 455 (710)
Q Consensus 376 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~ 455 (710)
+..+++++++.+..+.+... +...+++++.|.+.++.... . .+.++++|++|++++|.++.+| ++.+++|++
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~--~---~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTN--L---DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSC--C---CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred hcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCCCce--e---ecCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 34456677777777666655 35566677777776665422 1 1566677777777777666654 566666777
Q ss_pred EEeccccccccCcchhcccCCCEEEcCCC-ccccccccccccccCcEEEccccccccCccCCchhhhh----------c-
Q 005181 456 LSVKNTEVKIIPKSIRNLLSLEILDLKNT-LVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAK----------S- 523 (710)
Q Consensus 456 L~l~~n~i~~lp~~~~~l~~L~~L~l~~n-~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~----------~- 523 (710)
|++++|.++.++ +..+++|++|++++| .++.+ .+..+++|++|++++ |.+++........+. .
T Consensus 132 L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~l~l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 132 LNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF-NKITELDVSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp EECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS-SCCCCCCCTTCTTCCEEECCSSCCSCC
T ss_pred EECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC-CccceeccccCCCCCEEECcCCcCCee
Confidence 777666666543 455555555555544 33333 244445555555542 333322111000000 0
Q ss_pred cCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCcccccccccc-------ccceEEeecccCCceeEEec
Q 005181 524 LSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASP-------NLLELRLTGTYDYELFHFEA 595 (710)
Q Consensus 524 l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-------~L~~L~L~~n~~~~~~~~~~ 595 (710)
-....++|+.|++++| +..+| +..+++|+.|++++|.+++.++..+..+. +|+.|++++|...+.+| +
T Consensus 207 ~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~ 282 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--A 282 (457)
T ss_dssp CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--C
T ss_pred ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--c
Confidence 0223357888888888 66676 67888888888888888876655554443 45666666666555544 5
Q ss_pred CCCCcccEEEeccCCCceeeeec--------CCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhc--
Q 005181 596 GWFPKLQKLLLWDFVAVKSVIIE--------KGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMT-- 665 (710)
Q Consensus 596 ~~~~~L~~L~L~~n~~~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-- 665 (710)
+.+++|+.|++++|...+.+|.. +..+++|+.|++++|++.+ ++ +.++++|+.|++++|...-...+
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~l~~L~~ 359 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQDFSSVGK 359 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCBCTTGGG
T ss_pred cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCCcccccc
Confidence 78899999999999988887753 5677899999999999886 43 89999999999998753211111
Q ss_pred ccCCcCccccCcCeEEEEEEeCCeeeEeehhhhc-cCcHHHH
Q 005181 666 KDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILS-SLSPEYV 706 (710)
Q Consensus 666 ~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~-~~~~~~~ 706 (710)
.+++.|++.+. ..+..+..+++++|.++ .+|++++
T Consensus 360 L~l~~n~l~g~------~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 360 IPALNNNFEAE------GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp SSGGGTSEEEE------EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred ccccCCcEEec------ceeeecCccccccCcEEEEcChhHh
Confidence 12445555543 23366888999999999 7777654
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=1.3e-24 Score=248.19 Aligned_cols=304 Identities=16% Similarity=0.134 Sum_probs=172.4
Q ss_pred CceeEEEEEccCcccccc--cCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcc-cccCcccceEE
Q 005181 380 SKTRRIAIQRSIDDGALE--SIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYL 456 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L 456 (710)
++++++.+..+.+...+. ...+++++.|.+.++.. ....+..|.++++|++|++++|.++.+|. .|.++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 567777777766655432 45567777777776654 34455667777777777777777776654 46777777777
Q ss_pred EeccccccccC-cchhcccCCCEEEcCCCccccc-cccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEE
Q 005181 457 SVKNTEVKIIP-KSIRNLLSLEILDLKNTLVSEL-PVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRL 534 (710)
Q Consensus 457 ~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L 534 (710)
++++|.++.+| ..|.++++|++|++++|.+..+ |..+.++++|++|++++ |.+++..+.... . ...++|+.|
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~----~-~~~~~L~~L 176 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSEELD----I-FANSSLKKL 176 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHHHHG----G-GTTCEESEE
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccCHHHhh----c-cccccccEE
Confidence 77777777555 3477777777777777766544 33466777777777773 444433321100 0 112367777
Q ss_pred EEeec-CCCC-CccccCC---------------------------CCccEEEEEeeccCCccccccccccc--cceEEee
Q 005181 535 YLMGN-MKKL-PDWIFKL---------------------------ENLIRLGLELSGLAEEPIRVLQASPN--LLELRLT 583 (710)
Q Consensus 535 ~L~~n-~~~i-p~~~~~l---------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~ 583 (710)
++++| +..+ |..+..+ ++|+.|++++|.+++..+..|..++. |+.|+++
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 77776 4333 3344433 34455555555555544555554433 6666666
Q ss_pred cccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCC-----CCcc----ccccCCCCcEEEE
Q 005181 584 GTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLM-----EIPI----GIEHLRNLKLLRF 654 (710)
Q Consensus 584 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-----~~p~----~~~~l~~L~~L~l 654 (710)
+|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|...+ .+|. .+..+++|++|++
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred CCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 555555444445555566666666655555555555555666666665543322 1222 4455556666666
Q ss_pred ecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhh--ccCcHHHH
Q 005181 655 DCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDIL--SSLSPEYV 706 (710)
Q Consensus 655 ~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l--~~~~~~~~ 706 (710)
+ +|++.+ ++...+..++.|+.+++++|.+ ..++...|
T Consensus 337 ~--------------~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f 375 (680)
T 1ziw_A 337 E--------------DNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375 (680)
T ss_dssp C--------------SCCBCC-CCTTTTTTCTTCCEEECTTCBSCCCEECTTTT
T ss_pred C--------------CCccCC-CChhHhccccCCcEEECCCCchhhhhcchhhh
Confidence 5 333333 3333333347777777777763 34444433
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=3.4e-25 Score=246.34 Aligned_cols=177 Identities=18% Similarity=0.135 Sum_probs=129.2
Q ss_pred CceeEEEEEccCccccc--ccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcc-cccCcccceEE
Q 005181 380 SKTRRIAIQRSIDDGAL--ESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPE-GVGNLFNLHYL 456 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L 456 (710)
+.++++.+..+.+...+ ....+++++.|.+.++.. ....+..|.++++|++|++++|.+..++. .++++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 56888888887776542 356678888888887765 35566778888888888888888887754 47888888888
Q ss_pred Eecccccc--ccCcchhcccCCCEEEcCCCc-cccccc-cccccccCcEEEccccccccCccCCchhhhhccCCCCcCcc
Q 005181 457 SVKNTEVK--IIPKSIRNLLSLEILDLKNTL-VSELPV-EIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQ 532 (710)
Q Consensus 457 ~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~-~~~~~~-~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~ 532 (710)
++++|.++ .+|..+.++++|++|++++|. ++.+|. .+.++++|++|+++ .|.+++..+. .+ ...++|+
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~------~l-~~l~~L~ 175 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK-ALSLRNYQSQ------SL-KSIRDIH 175 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-ETTCCEECTT------TT-TTCSEEE
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc-CCcccccChh------hh-hccccCc
Confidence 88888887 345668888888888888775 677764 67888888888888 4555554433 22 3344788
Q ss_pred EEEEeec-CCCCCccc-cCCCCccEEEEEeeccCCc
Q 005181 533 RLYLMGN-MKKLPDWI-FKLENLIRLGLELSGLAEE 566 (710)
Q Consensus 533 ~L~L~~n-~~~ip~~~-~~l~~L~~L~L~~n~l~~~ 566 (710)
.|++++| ...+|..+ ..+++|+.|++++|.+++.
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 8888888 56666654 5688899999998888763
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.6e-24 Score=247.38 Aligned_cols=310 Identities=17% Similarity=0.136 Sum_probs=185.4
Q ss_pred ccccCCceeEEEEEccCccccc--ccCCCCceeEEEeecCCCCC-------cchhhhhhcccccccEEecCCCCCccC-c
Q 005181 375 DLSRCSKTRRIAIQRSIDDGAL--ESIKDSKVRSVFLFNVDKLP-------DSFMNASIANFKLMKVLDLEDAPVDYL-P 444 (710)
Q Consensus 375 ~~~~~~~~r~l~l~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~-------~~~~~~~~~~~~~L~~L~l~~n~~~~l-~ 444 (710)
.+...++++.+.+..+.....+ ....+++++.|.+.++.... ..+....|..+++|++|++++|.+..+ +
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 346 (680)
T 1ziw_A 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346 (680)
T ss_dssp TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT
T ss_pred cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh
Confidence 3445566666666666554432 24456666666665432210 011122566777777777777777755 4
Q ss_pred ccccCcccceEEEecccccc--ccCcc-hhcc--cCCCEEEcCCCccccc-cccccccccCcEEEccccccccCccCCch
Q 005181 445 EGVGNLFNLHYLSVKNTEVK--IIPKS-IRNL--LSLEILDLKNTLVSEL-PVEIRNLKKLRYLMVYRYNYTTGSIMPAE 518 (710)
Q Consensus 445 ~~~~~l~~L~~L~l~~n~i~--~lp~~-~~~l--~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~n~~~~~~~~~~ 518 (710)
..+.++++|++|++++|.+. .++.. +..+ ++|+.|++++|.+..+ |..+..+++|++|+++ .|.+++..++
T Consensus 347 ~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~-- 423 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG-LNEIGQELTG-- 423 (680)
T ss_dssp TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCEEECCS--
T ss_pred hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC-CCcCccccCc--
Confidence 55667777777777776543 33322 3322 4677777776666555 3456777777777777 3444443322
Q ss_pred hhhhccCCCCcCccEEEEeec-CCC-CCccccCCCCccEEEEEeeccC--CccccccccccccceEEeecccCCceeEEe
Q 005181 519 AVAKSLSSPPQYLQRLYLMGN-MKK-LPDWIFKLENLIRLGLELSGLA--EEPIRVLQASPNLLELRLTGTYDYELFHFE 594 (710)
Q Consensus 519 ~~~~~l~~~~~~L~~L~L~~n-~~~-ip~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 594 (710)
..+...++|+.|++++| +.. .+..+..+++|+.|++++|.++ +..|..|+.+++|+.|++++|.+....+..
T Consensus 424 ----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 424 ----QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp ----GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ----ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence 11223346777777766 322 2445566667777777666654 344566667777777777777666655555
Q ss_pred cCCCCcccEEEeccCCCceee--------eecCCcCCCccEEEEccCCCCCCCc-cccccCCCCcEEEEecCcHHHHHhc
Q 005181 595 AGWFPKLQKLLLWDFVAVKSV--------IIEKGAMPDIRELEIGPCPLLMEIP-IGIEHLRNLKLLRFDCMVKQVYYMT 665 (710)
Q Consensus 595 ~~~~~~L~~L~L~~n~~~~~~--------~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~~~ 665 (710)
+.++++|+.|++++|.+.+.. +..+..+++|+.|++++|.+. .+| ..+.++++|+.|+++
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls---------- 568 (680)
T 1ziw_A 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLG---------- 568 (680)
T ss_dssp TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC----------
T ss_pred hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECC----------
Confidence 666777777777777655421 123566677777777777765 344 346677777777776
Q ss_pred ccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcHHHHh
Q 005181 666 KDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPEYVE 707 (710)
Q Consensus 666 ~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~~~~ 707 (710)
+ |.+..+|...|..++.|+.|++++|.|+.++++.++
T Consensus 569 ----~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 569 ----L-NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp ----S-SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred ----C-CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 3 233456666555557777777777777777777654
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=8.2e-25 Score=223.81 Aligned_cols=224 Identities=17% Similarity=0.101 Sum_probs=162.8
Q ss_pred ccccEEecCCCCCccCccc-ccCcccceEEEecccccccc---CcchhcccCCCEEEcCCCccccccccccccccCcEEE
Q 005181 428 KLMKVLDLEDAPVDYLPEG-VGNLFNLHYLSVKNTEVKII---PKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLM 503 (710)
Q Consensus 428 ~~L~~L~l~~n~~~~l~~~-~~~l~~L~~L~l~~n~i~~l---p~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~ 503 (710)
++|++|++++|.++.+|.. +.++++|++|++++|.++.+ |..+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 6788899999988888654 67888999999999888744 5667788899999999888888888888889999999
Q ss_pred ccccccccCccCCchhhhhccCCCCcCccEEEEeec-CC-CCCccccCCCCccEEEEEeeccCC-ccccccccccccceE
Q 005181 504 VYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MK-KLPDWIFKLENLIRLGLELSGLAE-EPIRVLQASPNLLEL 580 (710)
Q Consensus 504 l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~-~ip~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L 580 (710)
+++ |.+++.... ..+...++|+.|++++| +. ..|..+..+++|+.|++++|.+++ ..|..+..+++|+.|
T Consensus 108 l~~-n~l~~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 108 FQH-SNLKQMSEF------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp CTT-SEEESSTTT------TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCC-Ccccccccc------hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 984 554443321 12233347777777777 32 345556777777777777777765 456677777777777
Q ss_pred EeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCC-CCcEEEEecCc
Q 005181 581 RLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLR-NLKLLRFDCMV 658 (710)
Q Consensus 581 ~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~l~~~~ 658 (710)
++++|.+.+..+..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.+.+..|..+..++ +|+.|++++|+
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 7777777666566667777777777777776665555667777777777777777766676777763 77777777543
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=2.1e-24 Score=220.80 Aligned_cols=226 Identities=19% Similarity=0.181 Sum_probs=129.2
Q ss_pred CceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC---cccccCcccceEEEeccccccccCcchhcccCCCE
Q 005181 402 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL---PEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEI 478 (710)
Q Consensus 402 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l---~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~ 478 (710)
++++.|.+.++.. ..+++..|.++++|++|++++|.++.+ +..+..+++|++|++++|.++.+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 4566666665544 234444556666666666666665533 34445566666666666666666655666666666
Q ss_pred EEcCCCccccccc--cccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CC--CCCccccCCCCc
Q 005181 479 LDLKNTLVSELPV--EIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MK--KLPDWIFKLENL 553 (710)
Q Consensus 479 L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~--~ip~~~~~l~~L 553 (710)
|++++|.+..++. .+..+++|++|++++ |.+++..+. .+...++|+.|++++| +. .+|..+..+++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNG-------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTT-SCCEECSTT-------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred EECCCCcccccccchhhhhccCCCEEECCC-CcCCccchh-------hcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 6666666655543 455666666666663 333322211 1222345666666666 32 245556666666
Q ss_pred cEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCC-CccEEEEcc
Q 005181 554 IRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMP-DIRELEIGP 632 (710)
Q Consensus 554 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~ 632 (710)
+.|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 6666666666655555666666666666666666555444455566666666666666555555555553 666666666
Q ss_pred CCCCC
Q 005181 633 CPLLM 637 (710)
Q Consensus 633 n~~~~ 637 (710)
|++..
T Consensus 258 N~~~~ 262 (306)
T 2z66_A 258 NDFAC 262 (306)
T ss_dssp CCEEC
T ss_pred CCeec
Confidence 66543
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=7.2e-24 Score=221.38 Aligned_cols=263 Identities=16% Similarity=0.125 Sum_probs=190.6
Q ss_pred EEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC-cccccCcccceEEEeccccc
Q 005181 385 IAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTEV 463 (710)
Q Consensus 385 l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~i 463 (710)
.....+.....|. .-.++++.|.+.++.. ....+..|.++++|++|++++|.++.+ |..+.++++|++|++++|.+
T Consensus 36 c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPS-GLTEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSCCT-TCCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcccccc-cccccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 3334444444433 3346888888888765 345556788889999999999888876 56688888899999999988
Q ss_pred cccCcc-hhcccCCCEEEcCCCccccccc--cccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-
Q 005181 464 KIIPKS-IRNLLSLEILDLKNTLVSELPV--EIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN- 539 (710)
Q Consensus 464 ~~lp~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n- 539 (710)
+.+|.. +.++++|++|++++|.+..+|. .+.++++|++|++++|+.++...+. .+...++|+.|++++|
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-------~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-------DFAGLTFLEELEIDASD 185 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-------TTTTCCEEEEEEEEETT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH-------HccCCCCCCEEECCCCC
Confidence 877776 7888899999999888888876 6788889999998865445443322 2233458888888888
Q ss_pred CCCC-CccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEe---cCCCCcccEEEeccCCCce--
Q 005181 540 MKKL-PDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFE---AGWFPKLQKLLLWDFVAVK-- 613 (710)
Q Consensus 540 ~~~i-p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~---~~~~~~L~~L~L~~n~~~~-- 613 (710)
+..+ |..+..+++|+.|++++|.++......+..+++|+.|++++|.+....+.. ....+.++.++++++.+.+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 4443 677888888888888888887655555666888888888888777643222 2345667778887776654
Q ss_pred --eeeecCCcCCCccEEEEccCCCCCCCccc-cccCCCCcEEEEecCc
Q 005181 614 --SVIIEKGAMPDIRELEIGPCPLLMEIPIG-IEHLRNLKLLRFDCMV 658 (710)
Q Consensus 614 --~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~~~ 658 (710)
.+|..+..+++|+.|++++|.+. .+|.. +.++++|++|++++|+
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 35556677888888888888876 56655 4788888888888774
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=225.44 Aligned_cols=221 Identities=19% Similarity=0.150 Sum_probs=141.4
Q ss_pred ccccEEecCCCCCccC-cccccCcccceEEEeccccccccC-cchhcccCCCEEEcCCCccccccc-cccccccCcEEEc
Q 005181 428 KLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTEVKIIP-KSIRNLLSLEILDLKNTLVSELPV-EIRNLKKLRYLMV 504 (710)
Q Consensus 428 ~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l 504 (710)
++++.|+|++|.++.+ +..|.++++|+.|+|++|.++.++ ..|.++++|++|+|++|.++.+|. .|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 4556666666666654 345566666666666666666443 335666666666666666665554 3556666666666
Q ss_pred cccccccCccCCchhhhhccCCCCcCccEEEEeec--CCCCCc-cccCCCCccEEEEEeeccCCccccccccccccceEE
Q 005181 505 YRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN--MKKLPD-WIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELR 581 (710)
Q Consensus 505 ~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n--~~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 581 (710)
++ |.++.... ..+...++|+.|+|++| +..++. .|.++++|+.|+|++|.++.. ..+..+++|+.|+
T Consensus 144 ~~-N~i~~~~~-------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 213 (440)
T 3zyj_A 144 RN-NPIESIPS-------YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELD 213 (440)
T ss_dssp CS-CCCCEECT-------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEE
T ss_pred CC-CcccccCH-------HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccCEEE
Confidence 63 33332221 12223346666666653 344443 466777777777777777653 2466777777777
Q ss_pred eecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCc
Q 005181 582 LTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMV 658 (710)
Q Consensus 582 L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 658 (710)
|++|.+....+..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|++.+..+..+..+++|+.|++++||
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 77777777666677777778888887777776666677777788888888887765555566777788888887775
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.7e-23 Score=226.22 Aligned_cols=221 Identities=19% Similarity=0.148 Sum_probs=145.4
Q ss_pred ccccEEecCCCCCccC-cccccCcccceEEEeccccccccC-cchhcccCCCEEEcCCCcccccccc-ccccccCcEEEc
Q 005181 428 KLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTEVKIIP-KSIRNLLSLEILDLKNTLVSELPVE-IRNLKKLRYLMV 504 (710)
Q Consensus 428 ~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l 504 (710)
+++++|+|++|.++.+ +..|.++++|+.|+|++|.++.++ ..|.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4556666666666544 445566666666666666666433 3456666666666666666555543 555666666666
Q ss_pred cccccccCccCCchhhhhccCCCCcCccEEEEeec--CCCCCc-cccCCCCccEEEEEeeccCCccccccccccccceEE
Q 005181 505 YRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN--MKKLPD-WIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELR 581 (710)
Q Consensus 505 ~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n--~~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 581 (710)
++ |.++.... ..+...++|+.|+|++| ++.++. .|.++++|+.|+|++|.++.. ..+..+++|+.|+
T Consensus 155 ~~-N~l~~~~~-------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 224 (452)
T 3zyi_A 155 RN-NPIESIPS-------YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELE 224 (452)
T ss_dssp CS-CCCCEECT-------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEE
T ss_pred CC-CCcceeCH-------hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEE
Confidence 63 33332221 12233346666666653 444443 467778888888888887764 3467778888888
Q ss_pred eecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCc
Q 005181 582 LTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMV 658 (710)
Q Consensus 582 L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 658 (710)
|++|.+.+..+..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|++.+..+..+..+++|+.|++++|+
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 88888777767777788888888888888777767777788888888888888775555667778888888888775
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.8e-24 Score=225.92 Aligned_cols=254 Identities=20% Similarity=0.181 Sum_probs=208.6
Q ss_pred ccccEEecCCCCCccCcc-cccCcccceEEEeccccccccC-cchhcccCCCEEEcCCCcccccccc-ccccccCcEEEc
Q 005181 428 KLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTEVKIIP-KSIRNLLSLEILDLKNTLVSELPVE-IRNLKKLRYLMV 504 (710)
Q Consensus 428 ~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l 504 (710)
++|++|++++|.++.++. .+.++++|+.|++++|.++.++ ..|.++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 589999999999998865 7899999999999999999664 5699999999999999999999886 889999999999
Q ss_pred cccccccCccCCchhhhhccCCCCcCccEEEEeec--CCCC-CccccCCCCccEEEEEeeccCCccccccccccccceEE
Q 005181 505 YRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN--MKKL-PDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELR 581 (710)
Q Consensus 505 ~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n--~~~i-p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 581 (710)
++ |.++..... ..+...++|+.|++++| +..+ +..+.++++|+.|++++|.+++..+..++.+++|++|+
T Consensus 132 ~~-n~l~~l~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 132 LG-NPYKTLGET------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp TT-CCCSSSCSS------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CC-CCCcccCch------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 94 566543321 13444569999999998 4555 45788999999999999999988889999999999999
Q ss_pred eecccCCceeEEecCCCCcccEEEeccCCCceeeeecC---CcCCCccEEEEccCCCCC----CCccccccCCCCcEEEE
Q 005181 582 LTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEK---GAMPDIRELEIGPCPLLM----EIPIGIEHLRNLKLLRF 654 (710)
Q Consensus 582 L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~---~~l~~L~~L~l~~n~~~~----~~p~~~~~l~~L~~L~l 654 (710)
+++|.+.......+..+++|+.|++++|.+.+..+..+ ..++.++.+++.++.+.+ .+|..+.++++|+.|++
T Consensus 205 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp EECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 99999876654445568999999999998776543322 346788999999998765 36778899999999999
Q ss_pred ecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcH
Q 005181 655 DCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSP 703 (710)
Q Consensus 655 ~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~ 703 (710)
++ |.+..+|..++..++.|+.+++++|.++.-.+
T Consensus 285 s~---------------N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 285 SR---------------NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CS---------------SCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CC---------------CCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 84 33458888876666999999999999996654
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=3.9e-23 Score=208.95 Aligned_cols=219 Identities=18% Similarity=0.116 Sum_probs=160.2
Q ss_pred cEEecCCCCCccCcccccCcccceEEEeccccccccCc-chhcccCCCEEEcCCCccccc-cccccccccCcEEEccccc
Q 005181 431 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPK-SIRNLLSLEILDLKNTLVSEL-PVEIRNLKKLRYLMVYRYN 508 (710)
Q Consensus 431 ~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~n 508 (710)
++++.+++.++.+|..+ .++|+.|++++|.++.++. .|..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45666666666666543 3567777777777765543 366667777777776666655 4456667777777776433
Q ss_pred cccCccCCchhhhhccCCCCcCccEEEEeec-CCCC-CccccCCCCccEEEEEeeccCCccccccccccccceEEeeccc
Q 005181 509 YTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKL-PDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTY 586 (710)
Q Consensus 509 ~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~i-p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 586 (710)
.++...+. .+...++|+.|++++| +..+ |..+..+++|++|++++|.++...+..|+.+++|+.|++++|.
T Consensus 92 ~l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 92 QLRSVDPA-------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp TCCCCCTT-------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHH-------HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 24433222 1223346777777776 4444 5567888999999999999988777778899999999999998
Q ss_pred CCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCc
Q 005181 587 DYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMV 658 (710)
Q Consensus 587 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 658 (710)
+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 877655567888999999999999888778888899999999999999886555678899999999999875
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=8.4e-23 Score=226.17 Aligned_cols=266 Identities=17% Similarity=0.162 Sum_probs=203.5
Q ss_pred ceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEEecc
Q 005181 381 KTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKN 460 (710)
Q Consensus 381 ~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~ 460 (710)
+++.+.+..+....++.... ++++.|.+.++... .++. .+++|++|+|++|.++.+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~--~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT--SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS--CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC--CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 47778888887776644333 89999999888652 2322 57889999999999998886 678999999999
Q ss_pred ccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-
Q 005181 461 TEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN- 539 (710)
Q Consensus 461 n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n- 539 (710)
|.++.+|. .+++|+.|++++|.++.+|.. +++|++|++++ |.+++.. ..+.+|+.|++++|
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~-N~l~~l~-----------~~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLP-----------ALPSELCKLWAYNNQ 172 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSCCC-----------CCCTTCCEEECCSSC
T ss_pred CcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC-CcCCCcC-----------CccCCCCEEECCCCC
Confidence 99998887 578899999999999888874 48899999984 5555322 23358899999998
Q ss_pred CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecC
Q 005181 540 MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEK 619 (710)
Q Consensus 540 ~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 619 (710)
+..+| ..+++|+.|++++|.+++.+ . .+++|+.|++++|.+.... ..+++|+.|+|++|.+.+ +|
T Consensus 173 l~~l~---~~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~-lp--- 237 (622)
T 3g06_A 173 LTSLP---MLPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTS-LP--- 237 (622)
T ss_dssp CSCCC---CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSC-CC---
T ss_pred CCCCc---ccCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCc-CC---
Confidence 77777 45788999999999987643 2 3478899999988887643 245889999999987665 44
Q ss_pred CcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhc
Q 005181 620 GAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILS 699 (710)
Q Consensus 620 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~ 699 (710)
..+++|+.|++++|.+. .+|. .+++|+.|++++ |+ +..+|..+.. ++.|+.|++++|.++
T Consensus 238 ~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~--------------N~-L~~lp~~l~~-l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 238 VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR--------------NQ-LTRLPESLIH-LSSETTVNLEGNPLS 297 (622)
T ss_dssp CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS--------------SC-CCSCCGGGGG-SCTTCEEECCSCCCC
T ss_pred CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC--------------CC-CCcCCHHHhh-ccccCEEEecCCCCC
Confidence 45688999999999876 5665 678899999973 33 3477877544 488999999999998
Q ss_pred cCcHHHHhhc
Q 005181 700 SLSPEYVEQI 709 (710)
Q Consensus 700 ~~~~~~~~~~ 709 (710)
..++..+.++
T Consensus 298 ~~~~~~l~~L 307 (622)
T 3g06_A 298 ERTLQALREI 307 (622)
T ss_dssp HHHHHHHHHH
T ss_pred CcCHHHHHhc
Confidence 7777766543
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=4.1e-23 Score=223.18 Aligned_cols=244 Identities=17% Similarity=0.157 Sum_probs=206.5
Q ss_pred cccEEecCCCCCccCcccccCcccceEEEecccccccc-CcchhcccCCCEEEcCCCcccccc-ccccccccCcEEEccc
Q 005181 429 LMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKII-PKSIRNLLSLEILDLKNTLVSELP-VEIRNLKKLRYLMVYR 506 (710)
Q Consensus 429 ~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~ 506 (710)
....++.+++.++.+|..+. ++|+.|+|++|.++.+ |..|.++++|++|+|++|.+..++ ..|.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34678888888999987664 7899999999999965 556999999999999999998886 5689999999999995
Q ss_pred cccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCc-cccCCCCccEEEEEeec-cCCccccccccccccceEEee
Q 005181 507 YNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPD-WIFKLENLIRLGLELSG-LAEEPIRVLQASPNLLELRLT 583 (710)
Q Consensus 507 ~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~ 583 (710)
|.++...+ ..+...++|+.|+|++| +..+|. .|.++++|+.|++++|. +....+..|..+++|+.|+|+
T Consensus 133 -n~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 133 -NWLTVIPS-------GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp -SCCSBCCT-------TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred -CcCCccCh-------hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 66664432 23444569999999999 777765 67899999999999854 565666689999999999999
Q ss_pred cccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHH
Q 005181 584 GTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYY 663 (710)
Q Consensus 584 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~ 663 (710)
+|.+.... .+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|.+.+..|..+.++++|+.|++++
T Consensus 205 ~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------- 275 (452)
T 3zyi_A 205 MCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH------- 275 (452)
T ss_dssp TSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-------
T ss_pred CCcccccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC-------
Confidence 99988763 578899999999999999988888999999999999999999888888899999999999984
Q ss_pred hcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhc
Q 005181 664 MTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILS 699 (710)
Q Consensus 664 ~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~ 699 (710)
| .+..+|...+..++.|+.|++++|.+.
T Consensus 276 -------N-~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 276 -------N-NLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp -------S-CCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred -------C-cCCccChHHhccccCCCEEEccCCCcC
Confidence 3 345677666666689999999999986
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=4.4e-23 Score=233.72 Aligned_cols=314 Identities=17% Similarity=0.152 Sum_probs=219.1
Q ss_pred cCCceeEEEEEccCcccccc--cCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCc-ccccCcccce
Q 005181 378 RCSKTRRIAIQRSIDDGALE--SIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGVGNLFNLH 454 (710)
Q Consensus 378 ~~~~~r~l~l~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~-~~~~~l~~L~ 454 (710)
.+..+++|.+..+.+...++ ...+++|+.|.+.++.. ..+.+.+|.++++|++|+|++|.++.+| ..|.++++|+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 34579999999999987653 67789999999999875 4667788999999999999999999886 5689999999
Q ss_pred EEEeccccccccCcc-hhcccCCCEEEcCCCcccc--ccccccccccCcEEEccccccccCccCCchhhh----------
Q 005181 455 YLSVKNTEVKIIPKS-IRNLLSLEILDLKNTLVSE--LPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVA---------- 521 (710)
Q Consensus 455 ~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~--~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~---------- 521 (710)
+|++++|.++.+|+. |+++++|++|++++|.+.. +|..+..+++|++|++++ |.+++..+.....+
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCTTCCCEE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccccccccchhhhhhhhhhh
Confidence 999999999988765 8999999999999998865 467789999999999995 44433222110000
Q ss_pred ---------------------------------------hc---------------------------------------
Q 005181 522 ---------------------------------------KS--------------------------------------- 523 (710)
Q Consensus 522 ---------------------------------------~~--------------------------------------- 523 (710)
..
T Consensus 207 ~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 207 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred hcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 00
Q ss_pred --------------c----------------------CCCCcCccEEEEeec-CCCCC--------------------cc
Q 005181 524 --------------L----------------------SSPPQYLQRLYLMGN-MKKLP--------------------DW 546 (710)
Q Consensus 524 --------------l----------------------~~~~~~L~~L~L~~n-~~~ip--------------------~~ 546 (710)
. ......|+.|++.+| ...++ ..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 366 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 366 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc
Confidence 0 001123444444443 11111 01
Q ss_pred ccCCCCccEEEEEeeccCCc--------------------------------------------------cccccccccc
Q 005181 547 IFKLENLIRLGLELSGLAEE--------------------------------------------------PIRVLQASPN 576 (710)
Q Consensus 547 ~~~l~~L~~L~L~~n~l~~~--------------------------------------------------~~~~l~~l~~ 576 (710)
...+++|+.|++++|.+... ....|..+++
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccc
Confidence 12344555555555443210 0112223334
Q ss_pred cceEEeecccCCceeEEecCCCCcccEEEeccCCCce-eeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEe
Q 005181 577 LLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVK-SVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFD 655 (710)
Q Consensus 577 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 655 (710)
++.++++.|.+....+..+..+++|+.|++++|.... ..|..+..+++|+.|+|++|++.+..|..|.++++|++|+|+
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 4444444444443334445667788888888886543 466778889999999999999887778889999999999998
Q ss_pred cCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcHHHHhhc
Q 005181 656 CMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSPEYVEQI 709 (710)
Q Consensus 656 ~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~~~~~~~ 709 (710)
+|++ ..+|...+..++.|+.|++++|.|+.++++.+.++
T Consensus 527 --------------~N~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 527 --------------HNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp --------------TSCC-CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred --------------CCcC-CCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 4344 45555555556899999999999999999887654
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=6.8e-23 Score=220.64 Aligned_cols=243 Identities=18% Similarity=0.157 Sum_probs=206.1
Q ss_pred ccEEecCCCCCccCcccccCcccceEEEeccccccccC-cchhcccCCCEEEcCCCcccccc-ccccccccCcEEEcccc
Q 005181 430 MKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIP-KSIRNLLSLEILDLKNTLVSELP-VEIRNLKKLRYLMVYRY 507 (710)
Q Consensus 430 L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~ 507 (710)
.+.++.+++.++.+|..+. ++++.|+|++|.++.++ ..|.++++|++|+|++|.+..++ ..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~- 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD- 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS-
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC-
Confidence 5678888999999998764 78999999999999665 56999999999999999998887 4689999999999995
Q ss_pred ccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCc-cccCCCCccEEEEEeec-cCCccccccccccccceEEeec
Q 005181 508 NYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPD-WIFKLENLIRLGLELSG-LAEEPIRVLQASPNLLELRLTG 584 (710)
Q Consensus 508 n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~ 584 (710)
|.++.... ..+...++|+.|+|++| +..+|. .|..+++|+.|+|++|. +....+..|..+++|+.|+|++
T Consensus 122 n~l~~~~~-------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 122 NRLTTIPN-------GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp SCCSSCCT-------TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CcCCeeCH-------hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 66664442 23344569999999999 777765 67899999999999955 5555666899999999999999
Q ss_pred ccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHh
Q 005181 585 TYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYM 664 (710)
Q Consensus 585 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~ 664 (710)
|.+.... .+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|.+.+..+..+.++++|+.|+|++
T Consensus 195 n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-------- 264 (440)
T 3zyj_A 195 CNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-------- 264 (440)
T ss_dssp SCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT--------
T ss_pred CcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC--------
Confidence 9988753 478899999999999999888888999999999999999999888888899999999999984
Q ss_pred cccCCcCccccCcCeEEEEEEeCCeeeEeehhhhc
Q 005181 665 TKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILS 699 (710)
Q Consensus 665 ~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~ 699 (710)
|.+..+|...+..++.|+.+++++|.+.
T Consensus 265 -------N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 265 -------NNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp -------SCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred -------CCCCccChhHhccccCCCEEEcCCCCcc
Confidence 3344677666666699999999999986
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=8.5e-22 Score=211.77 Aligned_cols=179 Identities=21% Similarity=0.276 Sum_probs=112.1
Q ss_pred CceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhccc-ccccEEecCCCCCccCcccccCcccceEEEe
Q 005181 380 SKTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANF-KLMKVLDLEDAPVDYLPEGVGNLFNLHYLSV 458 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l 458 (710)
++++.+.+..+.....+. ..++++.|.+.++.... + ... ++|++|++++|.++.+| .++++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~--l-----~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKA--L-----SDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSC--C-----CSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCc--c-----cCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence 567777777777666433 23677777777665421 1 111 57777888887777777 4777777888888
Q ss_pred ccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEee
Q 005181 459 KNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMG 538 (710)
Q Consensus 459 ~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~ 538 (710)
++|.++.+|..+ .+|++|++++|.+..+| .+.++++|++|++++ |.+++.. ..+.+|+.|++++
T Consensus 161 ~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~-N~l~~l~-----------~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 161 DNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN-NSLKKLP-----------DLPLSLESIVAGN 224 (454)
T ss_dssp CSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-SCCSSCC-----------CCCTTCCEEECCS
T ss_pred CCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCC-CcCCcCC-----------CCcCcccEEECcC
Confidence 877777766543 47777788777777776 577777777777773 4444321 1123666777766
Q ss_pred c-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCc
Q 005181 539 N-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYE 589 (710)
Q Consensus 539 n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 589 (710)
| +..+|. +..+++|+.|++++|.+++.+ . .+++|+.|++++|.+.+
T Consensus 225 n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 225 NILEELPE-LQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp SCCSSCCC-CTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSC
T ss_pred CcCCcccc-cCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCcccc
Confidence 6 555663 566666666666666665422 1 12445555555554443
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=4.1e-24 Score=218.88 Aligned_cols=252 Identities=17% Similarity=0.071 Sum_probs=192.9
Q ss_pred hhcccccccEEecCCCCCccCcccccCcccceEEEecccccc--ccCcchh-------cccCCCEEEcCCCccc-ccccc
Q 005181 423 SIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVK--IIPKSIR-------NLLSLEILDLKNTLVS-ELPVE 492 (710)
Q Consensus 423 ~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~--~lp~~~~-------~l~~L~~L~l~~n~~~-~~~~~ 492 (710)
.++..++|+.|++++|.+ .+|..+... |+.|++++|.++ .+|..+. ++++|++|++++|.+. .+|..
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 356678889999999999 788766544 889999999986 5666665 7899999999988876 67776
Q ss_pred c--cccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCC-ccccCCCCccEEEEEeeccCCc--
Q 005181 493 I--RNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLP-DWIFKLENLIRLGLELSGLAEE-- 566 (710)
Q Consensus 493 ~--~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip-~~~~~l~~L~~L~L~~n~l~~~-- 566 (710)
+ ..+++|++|+++ +|.+++. +.....+.. ..+++|++|+|++| +..++ ..+..+++|+.|++++|.+.+.
T Consensus 115 ~~~~~l~~L~~L~Ls-~N~l~~~-~~~~~~l~~--~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 115 LLEATGPDLNILNLR-NVSWATR-DAWLAELQQ--WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp SSSCCSCCCSEEEEE-SCBCSSS-SSHHHHHHT--TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHhcCCCccEEEcc-CCCCcch-hHHHHHHHH--hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 5 889999999999 5667665 332211111 12358999999999 66665 6889999999999999997653
Q ss_pred ccccc--ccccccceEEeecccCCce---eEEecCCCCcccEEEeccCCCceeee-ecCCcCCCccEEEEccCCCCCCCc
Q 005181 567 PIRVL--QASPNLLELRLTGTYDYEL---FHFEAGWFPKLQKLLLWDFVAVKSVI-IEKGAMPDIRELEIGPCPLLMEIP 640 (710)
Q Consensus 567 ~~~~l--~~l~~L~~L~L~~n~~~~~---~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p 640 (710)
.+..+ +.+++|+.|++++|.+... ....+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.+. .+|
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 23333 7899999999999988742 22334577899999999999887664 45567899999999999987 788
Q ss_pred cccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccC
Q 005181 641 IGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSL 701 (710)
Q Consensus 641 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~ 701 (710)
..+. ++|++|+++ +|++ ..+|. +..++.|+.+++++|.++..
T Consensus 270 ~~~~--~~L~~L~Ls--------------~N~l-~~~p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 270 KGLP--AKLSVLDLS--------------YNRL-DRNPS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SSCC--SEEEEEECC--------------SSCC-CSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred hhcc--CCceEEECC--------------CCCC-CCChh--HhhCCCCCEEeccCCCCCCC
Confidence 7776 899999998 4343 45576 44558899999999999854
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=1e-22 Score=209.04 Aligned_cols=222 Identities=19% Similarity=0.143 Sum_probs=182.5
Q ss_pred chhhhhhcccccccEEecCCCCCccC-cccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCcccccccccccc
Q 005181 418 SFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNL 496 (710)
Q Consensus 418 ~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l 496 (710)
..+...+..+++|++|++++|.++.+ |..+.++++|++|++++|.++.+++ +..+++|++|++++|.++.++. .
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~ 98 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----G 98 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----C
T ss_pred hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----C
Confidence 34456677888999999999999977 4678999999999999999986654 8899999999999999887763 4
Q ss_pred ccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCC-ccccCCCCccEEEEEeeccCCcccccc-cc
Q 005181 497 KKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLP-DWIFKLENLIRLGLELSGLAEEPIRVL-QA 573 (710)
Q Consensus 497 ~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip-~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~ 573 (710)
++|++|++++ |.+++..+. ..++|+.|++++| +..++ ..+..+++|+.|++++|.++...+..+ ..
T Consensus 99 ~~L~~L~l~~-n~l~~~~~~----------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 167 (317)
T 3o53_A 99 PSIETLHAAN-NNISRVSCS----------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (317)
T ss_dssp TTCCEEECCS-SCCSEEEEC----------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred CCcCEEECCC-CccCCcCcc----------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc
Confidence 8999999994 666554422 2358999999999 66664 467889999999999999988777766 47
Q ss_pred ccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEE
Q 005181 574 SPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLR 653 (710)
Q Consensus 574 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 653 (710)
+++|+.|++++|.+.... ....+++|+.|+|++|.+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|+
T Consensus 168 l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243 (317)
T ss_dssp TTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred cCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEE
Confidence 899999999999987762 33458999999999998765 4555888999999999999976 6788899999999999
Q ss_pred EecCcH
Q 005181 654 FDCMVK 659 (710)
Q Consensus 654 l~~~~~ 659 (710)
+++|+.
T Consensus 244 l~~N~~ 249 (317)
T 3o53_A 244 LRGNGF 249 (317)
T ss_dssp CTTCCC
T ss_pred ccCCCc
Confidence 997753
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=2.1e-23 Score=214.13 Aligned_cols=247 Identities=13% Similarity=0.084 Sum_probs=200.1
Q ss_pred ccccEEecCCCCCccCc-ccccCcccceEEEeccccccccC-cchhcccCCCEEEcCCCccccccccccccccCcEEEcc
Q 005181 428 KLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTEVKIIP-KSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVY 505 (710)
Q Consensus 428 ~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~ 505 (710)
..++.++++.+.+...+ ..+..+++|+.|++++|.++.++ ..|..+++|++|++++|.+..+++ +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 34677788888877553 44557889999999999999665 569999999999999999987776 9999999999999
Q ss_pred ccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeec
Q 005181 506 RYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTG 584 (710)
Q Consensus 506 ~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 584 (710)
+ |.+++... .++|+.|++++| +..++. ..+++|+.|++++|.++...+..++.+++|+.|++++
T Consensus 89 ~-n~l~~l~~------------~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 89 N-NYVQELLV------------GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp S-SEEEEEEE------------CTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT
T ss_pred C-CccccccC------------CCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC
Confidence 5 55554331 158999999999 665553 3578999999999999998888999999999999999
Q ss_pred ccCCceeEEec-CCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHH
Q 005181 585 TYDYELFHFEA-GWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYY 663 (710)
Q Consensus 585 n~~~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~ 663 (710)
|.+....+..+ ..+++|+.|+|++|.+... +. ...+++|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~------- 223 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN------- 223 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTT-------
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcC-------
Confidence 99988655544 4689999999999997665 32 345999999999999987 4666799999999999984
Q ss_pred hcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhc-cCcHHHHhhc
Q 005181 664 MTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILS-SLSPEYVEQI 709 (710)
Q Consensus 664 ~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~-~~~~~~~~~~ 709 (710)
|+ +..+|..+.. ++.|+.+++++|.++ ...++++..+
T Consensus 224 -------N~-l~~l~~~~~~-l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 224 -------NK-LVLIEKALRF-SQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp -------SC-CCEECTTCCC-CTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred -------Cc-ccchhhHhhc-CCCCCEEEccCCCccCcCHHHHHhcc
Confidence 33 4467877544 489999999999998 6566666543
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.8e-22 Score=217.75 Aligned_cols=215 Identities=20% Similarity=0.155 Sum_probs=180.5
Q ss_pred cccccccEEecCCCCCccC-cccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEE
Q 005181 425 ANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLM 503 (710)
Q Consensus 425 ~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~ 503 (710)
..+++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+++ +..+++|++|+|++|.++.+|.. ++|++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 3445899999999999977 5789999999999999999996654 89999999999999999887743 8999999
Q ss_pred ccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCC-CccccCCCCccEEEEEeeccCCccccccc-cccccceE
Q 005181 504 VYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKL-PDWIFKLENLIRLGLELSGLAEEPIRVLQ-ASPNLLEL 580 (710)
Q Consensus 504 l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~i-p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L 580 (710)
++ +|.+++..+. .+++|+.|+|++| +..+ |..+..+++|+.|+|++|.+++..|..+. .+++|+.|
T Consensus 106 L~-~N~l~~~~~~----------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 106 AA-NNNISRVSCS----------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp CC-SSCCCCEEEC----------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred Cc-CCcCCCCCcc----------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 99 4666655432 2358999999999 6555 55788899999999999999987787776 79999999
Q ss_pred EeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcH
Q 005181 581 RLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVK 659 (710)
Q Consensus 581 ~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~ 659 (710)
+|++|.+.+.. ....+++|+.|+|++|.+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+.
T Consensus 175 ~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 175 NLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred ecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCC
Confidence 99999988763 34468999999999998776 4455889999999999999987 5788899999999999998854
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.1e-22 Score=220.82 Aligned_cols=225 Identities=13% Similarity=0.112 Sum_probs=185.9
Q ss_pred CcccceEEEeccccccccC-cchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCC
Q 005181 449 NLFNLHYLSVKNTEVKIIP-KSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSP 527 (710)
Q Consensus 449 ~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~ 527 (710)
.+++|+.|+|++|.++.++ ..|..+++|++|+|++|.+..+++ +..+++|++|++++ |.+++..+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~-N~l~~l~~~----------- 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN-NYVQELLVG----------- 98 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCS-SEEEEEEEC-----------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecC-CcCCCCCCC-----------
Confidence 4559999999999999665 579999999999999999987776 99999999999995 566544321
Q ss_pred CcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecC-CCCcccEEE
Q 005181 528 PQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAG-WFPKLQKLL 605 (710)
Q Consensus 528 ~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~~~~L~~L~ 605 (710)
++|+.|++++| +..++. ..+++|+.|+|++|.+++..+..|+.+++|+.|+|++|.+.+..|..+. .+++|+.|+
T Consensus 99 -~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 -PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp -TTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred -CCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 58999999999 666654 4578999999999999998899999999999999999999887666665 789999999
Q ss_pred eccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEE
Q 005181 606 LWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFL 685 (710)
Q Consensus 606 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~ 685 (710)
|++|.+.+..+ ...+++|+.|+|++|.+.+ +|..+..+++|+.|++++ |++. .+|..+.. +
T Consensus 176 Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~--------------N~l~-~lp~~l~~-l 236 (487)
T 3oja_A 176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRN--------------NKLV-LIEKALRF-S 236 (487)
T ss_dssp CTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTT--------------SCCC-EECTTCCC-C
T ss_pred cCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecC--------------CcCc-ccchhhcc-C
Confidence 99999876633 3469999999999999875 555699999999999984 3444 57877544 4
Q ss_pred eCCeeeEeehhhhc-cCcHHHHhh
Q 005181 686 AAGRVFQYRKDILS-SLSPEYVEQ 708 (710)
Q Consensus 686 ~~l~~l~l~~N~l~-~~~~~~~~~ 708 (710)
+.|+.+++++|.++ ..++.++..
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTT
T ss_pred CCCCEEEcCCCCCcCcchHHHHHh
Confidence 89999999999998 444455443
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.3e-21 Score=197.48 Aligned_cols=201 Identities=19% Similarity=0.136 Sum_probs=142.7
Q ss_pred hcccccccEEecCCCCCccCcccccCcccceEEEecccccccc-CcchhcccCCCEEEcCCCccccccccccccccCcEE
Q 005181 424 IANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKII-PKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYL 502 (710)
Q Consensus 424 ~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L 502 (710)
++++++++.++++++.++.+|..+. ++++.|++++|.++.+ |..|..+++|++|++++|.++.++.. ..+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 5677888888888888888876653 6788888888888855 44588888888888888888777653 566677777
Q ss_pred EccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEe
Q 005181 503 MVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRL 582 (710)
Q Consensus 503 ~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 582 (710)
++++ |.+ ..+|..+..+++|+.|++++|.++..++..|..+++|+.|+|
T Consensus 83 ~Ls~-N~l------------------------------~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 83 DLSH-NQL------------------------------QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp ECCS-SCC------------------------------SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred ECCC-CcC------------------------------CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 7763 333 344555566777777777777777666666777777777777
Q ss_pred ecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcH
Q 005181 583 TGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVK 659 (710)
Q Consensus 583 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~ 659 (710)
++|.+....+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++||.
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 777776665555666777777777777765544445566777777777777765 5666777777777777777653
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=2.5e-21 Score=208.17 Aligned_cols=275 Identities=19% Similarity=0.189 Sum_probs=163.8
Q ss_pred CceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEEec
Q 005181 380 SKTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVK 459 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~ 459 (710)
++++.+.+..+.+...+....+++++.|.+.++... . .+. ...+|++|++++|.++.+| .++++++|+.|+++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~--~-lp~---~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK--K-LPD---LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS--C-CCC---CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCc--c-cCC---CcccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence 456666666666655545555666666666665432 1 111 1236666677766666665 46667777777777
Q ss_pred cccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec
Q 005181 460 NTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN 539 (710)
Q Consensus 460 ~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n 539 (710)
+|.++.+|... ++|++|++++|.+..+| .+..+++|++|++++ |.+++.. ..+++|+.|++++|
T Consensus 204 ~N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~-N~l~~l~-----------~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 204 NNSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADN-NLLKTLP-----------DLPPSLEALNVRDN 267 (454)
T ss_dssp SSCCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-SCCSSCC-----------SCCTTCCEEECCSS
T ss_pred CCcCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCC-CcCCccc-----------ccccccCEEECCCC
Confidence 77776665432 46777777777777776 377777788888774 4444321 12357888888888
Q ss_pred -CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeec
Q 005181 540 -MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIE 618 (710)
Q Consensus 540 -~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 618 (710)
+..+|.. .++|+.|++++|.+++.. . -.++|+.|++++|.+.+.. ...++|+.|++++|.+.+ +|..
T Consensus 268 ~l~~l~~~---~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~-lp~~ 335 (454)
T 1jl5_A 268 YLTDLPEL---PQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIE-LPAL 335 (454)
T ss_dssp CCSCCCCC---CTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSC-CCCC
T ss_pred cccccCcc---cCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCccc----CCcCcCCEEECCCCcccc-cccc
Confidence 6666653 377888888888876632 1 1267888888888876531 223589999999998765 5543
Q ss_pred CCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHH----HHHhcccCCcCccccCcCeEEEEEEeCCeeeEee
Q 005181 619 KGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQ----VYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYR 694 (710)
Q Consensus 619 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~ 694 (710)
+++|+.|++++|.+. .+|. .+++|++|++++|... ++..+..++.|+..+.+|.. .+.|+.|+++
T Consensus 336 ---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~----~~~L~~L~ls 404 (454)
T 1jl5_A 336 ---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL----PQNLKQLHVE 404 (454)
T ss_dssp ---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred ---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccc----cCcCCEEECC
Confidence 688999999999876 5776 4789999999977432 12233334455555656552 3789999999
Q ss_pred hhhhcc
Q 005181 695 KDILSS 700 (710)
Q Consensus 695 ~N~l~~ 700 (710)
+|.++.
T Consensus 405 ~N~l~~ 410 (454)
T 1jl5_A 405 TNPLRE 410 (454)
T ss_dssp ------
T ss_pred CCcCCc
Confidence 999985
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=9.2e-22 Score=198.81 Aligned_cols=204 Identities=21% Similarity=0.184 Sum_probs=160.9
Q ss_pred cccccEEecCCCCCccCc-ccccCcccceEEEecccccccc-CcchhcccCCCEEEcCCCc-cccc-cccccccccCcEE
Q 005181 427 FKLMKVLDLEDAPVDYLP-EGVGNLFNLHYLSVKNTEVKII-PKSIRNLLSLEILDLKNTL-VSEL-PVEIRNLKKLRYL 502 (710)
Q Consensus 427 ~~~L~~L~l~~n~~~~l~-~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~-~~~~-~~~~~~l~~L~~L 502 (710)
.++|++|++++|.++.++ ..+.++++|++|++++|.++.+ |..|..+++|++|++++|. ++.+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 357888888888888774 5677888888888888888855 5568888888888888875 7777 5567788888888
Q ss_pred EccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCc-cccCCCCccEEEEEeeccCCccccccccccccceE
Q 005181 503 MVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPD-WIFKLENLIRLGLELSGLAEEPIRVLQASPNLLEL 580 (710)
Q Consensus 503 ~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 580 (710)
++++ |.+++..+. .+...++|+.|++++| +..++. .+..+++|+.|++++|.++...+..|..+++|+.|
T Consensus 111 ~l~~-n~l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 111 HLDR-CGLQELGPG-------LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp ECTT-SCCCCCCTT-------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred ECCC-CcCCEECHh-------HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE
Confidence 8884 555544322 2334458888888888 666654 47889999999999999988777778899999999
Q ss_pred EeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCC
Q 005181 581 RLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLME 638 (710)
Q Consensus 581 ~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 638 (710)
++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus 183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred ECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 9999988887777788899999999999988776666688899999999999987653
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=3e-21 Score=193.20 Aligned_cols=197 Identities=19% Similarity=0.213 Sum_probs=117.1
Q ss_pred cccEEecCCCCCccCcccccCcccceEEEeccccccccCc-chhcccCCCEEEcCCCcccccccc-ccccccCcEEEccc
Q 005181 429 LMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPK-SIRNLLSLEILDLKNTLVSELPVE-IRNLKKLRYLMVYR 506 (710)
Q Consensus 429 ~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~ 506 (710)
..+.++++++.++.+|..+. ++|+.|++++|.++.+|. .|.++++|++|++++|.++.+|.. |.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 47789999999988887653 678999999999987765 588899999999999888888765 47788888888884
Q ss_pred cccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeeccc
Q 005181 507 YNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTY 586 (710)
Q Consensus 507 ~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 586 (710)
|.+++..+ ..+..+++|+.|++++|.++...+..|+.+++|+.|+|++|.
T Consensus 95 -n~l~~~~~-----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 95 -NKLQALPI-----------------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp -SCCCCCCT-----------------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -CcCCcCCH-----------------------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc
Confidence 44443221 123344444444444444444444444444444444444444
Q ss_pred CCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecC
Q 005181 587 DYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 587 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 657 (710)
+....+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 145 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 44433333444445555555554444433333444555555555555444332333444555555555544
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=8e-23 Score=209.27 Aligned_cols=230 Identities=19% Similarity=0.176 Sum_probs=186.0
Q ss_pred cccCcccceEEEeccccccccCcchhcccCCCEEEcCCCcccc--cccccc-------ccccCcEEEccccccccCccCC
Q 005181 446 GVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSE--LPVEIR-------NLKKLRYLMVYRYNYTTGSIMP 516 (710)
Q Consensus 446 ~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~--~~~~~~-------~l~~L~~L~l~~~n~~~~~~~~ 516 (710)
.++..++|+.|++++|.+ .+|..+... |+.|++++|.+.. +|..+. ++++|++|+++ +|.+++..+.
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE-NLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEE-EEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEcc-CCcccchhHH
Confidence 355778899999999999 888877655 9999999988744 565554 79999999999 5777766655
Q ss_pred chhhhhcc-CCCCcCccEEEEeec-CCCCCccccCC-----CCccEEEEEeeccCCccccccccccccceEEeecccCCc
Q 005181 517 AEAVAKSL-SSPPQYLQRLYLMGN-MKKLPDWIFKL-----ENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYE 589 (710)
Q Consensus 517 ~~~~~~~l-~~~~~~L~~L~L~~n-~~~ip~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 589 (710)
.+ ....++|+.|+|++| +..+|..+..+ ++|++|+|++|.+++..+..|+.+++|+.|++++|.+.+
T Consensus 114 ------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 114 ------PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp ------CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred ------HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 22 255669999999999 77778777766 999999999999999888999999999999999998765
Q ss_pred e--eEEe--cCCCCcccEEEeccCCCce--eee-ecCCcCCCccEEEEccCCCCCCCc-cccccCCCCcEEEEecCcHHH
Q 005181 590 L--FHFE--AGWFPKLQKLLLWDFVAVK--SVI-IEKGAMPDIRELEIGPCPLLMEIP-IGIEHLRNLKLLRFDCMVKQV 661 (710)
Q Consensus 590 ~--~~~~--~~~~~~L~~L~L~~n~~~~--~~~-~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~~~~~~ 661 (710)
. .+.. +..+++|++|+|++|.+.+ .++ ..+..+++|+.|++++|.+.+..| ..+..+++|++|+++
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls------ 261 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS------ 261 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT------
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC------
Confidence 3 1222 3789999999999998763 222 334578999999999999987665 456778999999998
Q ss_pred HHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccCcH
Q 005181 662 YYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSLSP 703 (710)
Q Consensus 662 ~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~~~ 703 (710)
+|++ +.+|..++ +.|+.|++++|.|+.+|.
T Consensus 262 --------~N~l-~~ip~~~~---~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 262 --------FTGL-KQVPKGLP---AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp --------TSCC-SSCCSSCC---SEEEEEECCSSCCCSCCC
T ss_pred --------CCcc-Chhhhhcc---CCceEEECCCCCCCCChh
Confidence 4344 48898876 789999999999999865
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=3.6e-20 Score=205.13 Aligned_cols=234 Identities=18% Similarity=0.141 Sum_probs=196.2
Q ss_pred CceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCcccccCcccceEEEec
Q 005181 380 SKTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVK 459 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~ 459 (710)
++++.+.+..+.+..++. .+++|+.|.+.++... .++ . .+++|++|++++|.++.+|. .+++|+.|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~--~lp-~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT--SLP-V---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS--CCC-C---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC--cCC-C---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECC
Confidence 689999999999887655 6799999999998752 232 2 77999999999999999986 67899999999
Q ss_pred cccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec
Q 005181 460 NTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN 539 (710)
Q Consensus 460 ~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n 539 (710)
+|.++.+|.. +++|++|++++|.++.+|. .+++|+.|+++ +|.+++.. ..+++|+.|+|++|
T Consensus 130 ~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~-~N~l~~l~-----------~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 130 GNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAY-NNQLTSLP-----------MLPSGLQELSVSDN 191 (622)
T ss_dssp SSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECC-SSCCSCCC-----------CCCTTCCEEECCSS
T ss_pred CCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECC-CCCCCCCc-----------ccCCCCcEEECCCC
Confidence 9999999875 4899999999999999886 35789999999 46665422 33468999999999
Q ss_pred -CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeec
Q 005181 540 -MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIE 618 (710)
Q Consensus 540 -~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 618 (710)
+..+|. .+++|+.|++++|.++..+ . .+++|+.|++++|.+.... ..+++|+.|+|++|.+.. +|.
T Consensus 192 ~l~~l~~---~~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~-lp~- 258 (622)
T 3g06_A 192 QLASLPT---LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTS-LPM- 258 (622)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-
T ss_pred CCCCCCC---ccchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCc-CCc-
Confidence 777875 3589999999999998643 2 3589999999999988743 567999999999998764 554
Q ss_pred CCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCc
Q 005181 619 KGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMV 658 (710)
Q Consensus 619 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 658 (710)
.+++|+.|+|++|.+. .+|..+.++++|+.|++++|+
T Consensus 259 --~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred --ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 6789999999999987 789999999999999999885
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=1.1e-21 Score=196.52 Aligned_cols=223 Identities=19% Similarity=0.164 Sum_probs=124.1
Q ss_pred cccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccc
Q 005181 429 LMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYN 508 (710)
Q Consensus 429 ~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n 508 (710)
.+..+++..+.+..+. ....+++|+.|++++|.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++ |
T Consensus 20 ~l~~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~-n 95 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG-N 95 (272)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT-S
T ss_pred HHHHHHhcCccccccc-ccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC-C
Confidence 3334455555544331 2345566666666666665543 3556666666666666655543 455666666666653 3
Q ss_pred cccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCc-cccCCCCccEEEEEeeccCCccccccccccccceEEeeccc
Q 005181 509 YTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPD-WIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTY 586 (710)
Q Consensus 509 ~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 586 (710)
.+++..+. .+..+++|++|+|++| +..+|. .+..+++|+.|++++|.+++..+..|+.+++|+.|++++|.
T Consensus 96 ~l~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 96 QLQSLPNG-------VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp CCCCCCTT-------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCccChh-------HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence 33322211 1112224444444444 333332 35666777777777777766666666667777777777776
Q ss_pred CCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcc
Q 005181 587 DYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTK 666 (710)
Q Consensus 587 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~ 666 (710)
+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+. +++|+.|++.
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~----------- 230 (272)
T 3rfs_A 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEW----------- 230 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHH-----------
T ss_pred cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHH-----------
Confidence 6655444456666677777776666655555566666677777766665432 3345555554
Q ss_pred cCCcCccccCcCeEEEE
Q 005181 667 DENWGKVTEHIPDVLVT 683 (710)
Q Consensus 667 ~~~~n~~~~~ip~~~~~ 683 (710)
.|++.+.+|..+..
T Consensus 231 ---~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 231 ---INKHSGVVRNSAGS 244 (272)
T ss_dssp ---HHHTGGGBBCTTSC
T ss_pred ---HHhCCCcccCcccc
Confidence 34566666665443
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=8.6e-21 Score=190.69 Aligned_cols=201 Identities=17% Similarity=0.095 Sum_probs=130.6
Q ss_pred ccccEEecCCCCCccCcc-cccCcccceEEEeccccccccCc-chhcccCCCEEEcCCCcccccc-ccccccccCcEEEc
Q 005181 428 KLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTEVKIIPK-SIRNLLSLEILDLKNTLVSELP-VEIRNLKKLRYLMV 504 (710)
Q Consensus 428 ~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l 504 (710)
++|++|++++|.++.++. .+.++++|++|++++|.++.++. .+.++++|++|++++|.++.++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468888888888887744 67788888888888888886655 5788888888888888877776 45778888888888
Q ss_pred cccccccCccCCchhhhhccCCCCcCccEEEEeec-CCC--CCccccCCCCccEEEEEeeccCCccccccccccccc---
Q 005181 505 YRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKK--LPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLL--- 578 (710)
Q Consensus 505 ~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~--ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--- 578 (710)
++ |.+++.... .....++|+.|++++| +.. +|..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 108 ~~-n~l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 108 VE-TNLASLENF-------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp TT-SCCCCSTTC-------CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CC-CCccccCch-------hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 84 444433321 1223346777777766 433 466666677777777777776665555666555555
Q ss_pred -eEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCC
Q 005181 579 -ELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLM 637 (710)
Q Consensus 579 -~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 637 (710)
.|++++|.+....+..+ ...+|+.|++++|.+.+..+..+..+++|+.|++++|++..
T Consensus 180 l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 180 LSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred eeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 56666666554333222 23356666666666554433445556666666666666543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=8.4e-21 Score=190.76 Aligned_cols=216 Identities=15% Similarity=0.093 Sum_probs=174.5
Q ss_pred EEecCCCCCccCcccccCcccceEEEeccccccccCc-chhcccCCCEEEcCCCccccccc-cccccccCcEEEcccccc
Q 005181 432 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPK-SIRNLLSLEILDLKNTLVSELPV-EIRNLKKLRYLMVYRYNY 509 (710)
Q Consensus 432 ~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~n~ 509 (710)
..+..+..+..+|..+. ++|+.|++++|.++.++. .|.++++|++|++++|.+..++. .+.++++|++|++++ |.
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NP 87 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-CC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC-Cc
Confidence 45666777888887663 589999999999997766 68999999999999999988876 688999999999994 66
Q ss_pred ccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCc-cccCCCCccEEEEEeeccCCc-cccccccccccceEEeeccc
Q 005181 510 TTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPD-WIFKLENLIRLGLELSGLAEE-PIRVLQASPNLLELRLTGTY 586 (710)
Q Consensus 510 ~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~-~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~ 586 (710)
+++..+. .+...++|+.|++++| +..++. .+..+++|+.|++++|.++.. .|..|+.+++|+.|++++|.
T Consensus 88 l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 88 IQSLALG-------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp CCEECTT-------TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCccChh-------hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 6554432 2334469999999998 666655 688999999999999999874 47889999999999999999
Q ss_pred CCceeEEecCCCCccc----EEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCc
Q 005181 587 DYELFHFEAGWFPKLQ----KLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMV 658 (710)
Q Consensus 587 ~~~~~~~~~~~~~~L~----~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 658 (710)
+....+..+..+++|+ .|++++|.+.+..+ ......+|+.|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT-TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCcCCHHHhhhhhhccccceeeecCCCcccccCc-cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 8887665666666776 89999998765444 44445589999999999876555567899999999999775
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=7.9e-21 Score=186.48 Aligned_cols=203 Identities=17% Similarity=0.139 Sum_probs=139.3
Q ss_pred CccCcccccCcccceEEEeccccccccCc-chhcccCCCEEEcCCCc-cccccc-cccccccCcEEEccccccccCccCC
Q 005181 440 VDYLPEGVGNLFNLHYLSVKNTEVKIIPK-SIRNLLSLEILDLKNTL-VSELPV-EIRNLKKLRYLMVYRYNYTTGSIMP 516 (710)
Q Consensus 440 ~~~l~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~-~~~~~~-~~~~l~~L~~L~l~~~n~~~~~~~~ 516 (710)
++.+|. + .++|+.|++++|.++.+|. .|.++++|++|++++|. ++.+++ .|.++++|++|+++++|.++...+.
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 555554 3 2356666666666665554 36666666666666664 666654 4566666666666643555433221
Q ss_pred chhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCcc---EEEEEee-ccCCccccccccccccc-eEEeecccCCce
Q 005181 517 AEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLI---RLGLELS-GLAEEPIRVLQASPNLL-ELRLTGTYDYEL 590 (710)
Q Consensus 517 ~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~~~~~ 590 (710)
.+...++|+.|++++| +..+|. +..+++|+ .|++++| .++...+..|..+++|+ .|++++|.+...
T Consensus 100 -------~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 100 -------ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp -------SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred -------HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 1222346666666666 556665 67777777 9999999 88887777889999999 999999988754
Q ss_pred eEEecCCCCcccEEEeccCC-CceeeeecCCcC-CCccEEEEccCCCCCCCccccccCCCCcEEEEecC
Q 005181 591 FHFEAGWFPKLQKLLLWDFV-AVKSVIIEKGAM-PDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 591 ~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 657 (710)
.+..+.. ++|+.|++++|. +....+..+..+ ++|+.|++++|++. .+|.. .+++|+.|+++++
T Consensus 172 ~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 172 QGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 4434444 789999999995 665555677888 99999999999876 45544 6778999988765
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=5e-21 Score=191.70 Aligned_cols=209 Identities=21% Similarity=0.183 Sum_probs=151.3
Q ss_pred hcccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCcccccccc-ccccccCcEE
Q 005181 424 IANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVE-IRNLKKLRYL 502 (710)
Q Consensus 424 ~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L 502 (710)
+..+++|+.|++++|.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+++. +.++++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 445667777777777776654 3666777777777777777653 566777777777777777666654 5677777777
Q ss_pred EccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCc-cccCCCCccEEEEEeeccCCccccccccccccceE
Q 005181 503 MVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPD-WIFKLENLIRLGLELSGLAEEPIRVLQASPNLLEL 580 (710)
Q Consensus 503 ~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 580 (710)
++++ |.+++..+. .+...++|+.|+|++| +..+|. .+..+++|+.|++++|.+++..+..|+.+++|+.|
T Consensus 115 ~L~~-n~l~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 115 VLVE-NQLQSLPDG-------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp ECTT-SCCCCCCTT-------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCC-CcCCccCHH-------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 7773 445433322 2233347777777777 555554 45788889999999988888777778888899999
Q ss_pred EeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCC
Q 005181 581 RLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNL 649 (710)
Q Consensus 581 ~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 649 (710)
++++|.+.+..+..+..+++|+.|++++|++. +.+++|+.|+++.|.+.+.+|..+..++..
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 99988888776666788889999999888654 357788888888888888888887766543
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=2.1e-20 Score=190.63 Aligned_cols=193 Identities=18% Similarity=0.183 Sum_probs=139.5
Q ss_pred hcccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEE
Q 005181 424 IANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLM 503 (710)
Q Consensus 424 ~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~ 503 (710)
+..+++|+.|++++|.+..++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 456778888888888888776 57788888888888888887776 888888888888888887775 577888888888
Q ss_pred ccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEe
Q 005181 504 VYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRL 582 (710)
Q Consensus 504 l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 582 (710)
+++ |.+++.. . ...+++|+.|++++| +..++. +..+++|+.|++++|.+++..+ +..+++|+.|++
T Consensus 114 l~~-n~l~~~~--------~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l 180 (308)
T 1h6u_A 114 LTS-TQITDVT--------P-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180 (308)
T ss_dssp CTT-SCCCCCG--------G-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCC-CCCCCch--------h-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEEC
Confidence 884 4444322 1 123346777777777 555554 6777788888888887776443 777778888888
Q ss_pred ecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCC
Q 005181 583 TGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLL 636 (710)
Q Consensus 583 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 636 (710)
++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++.
T Consensus 181 ~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 8777766543 6677777788887777655442 667777777777777764
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=4.1e-23 Score=224.32 Aligned_cols=318 Identities=14% Similarity=0.057 Sum_probs=208.3
Q ss_pred CCceeEEEEEccCcccc------cccCCCCceeEEEeecCCCCCcchhhhhhcccc----cccEEecCCCCCc-----cC
Q 005181 379 CSKTRRIAIQRSIDDGA------LESIKDSKVRSVFLFNVDKLPDSFMNASIANFK----LMKVLDLEDAPVD-----YL 443 (710)
Q Consensus 379 ~~~~r~l~l~~~~~~~~------~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~n~~~-----~l 443 (710)
.++++.+.+..+.+... .....+++++.|.+.++.. ........+..++ +|++|++++|.++ .+
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 45677888887776521 1234567888888877654 2222333344455 6888888888877 34
Q ss_pred cccccCcccceEEEeccccccc-cCcchh-----cccCCCEEEcCCCcccc-----ccccccccccCcEEEccccccccC
Q 005181 444 PEGVGNLFNLHYLSVKNTEVKI-IPKSIR-----NLLSLEILDLKNTLVSE-----LPVEIRNLKKLRYLMVYRYNYTTG 512 (710)
Q Consensus 444 ~~~~~~l~~L~~L~l~~n~i~~-lp~~~~-----~l~~L~~L~l~~n~~~~-----~~~~~~~l~~L~~L~l~~~n~~~~ 512 (710)
+..+..+++|+.|++++|.++. .+..+. ..++|++|++++|.++. ++..+..+++|++|++++ |.+++
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~i~~ 184 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN-NDINE 184 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS-SBCHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC-CCcch
Confidence 6777788888888888888762 222222 24578888888887654 355567778888888885 44443
Q ss_pred ccCCchhhhhccCCCCcCccEEEEeec-CCC-----CCccccCCCCccEEEEEeeccCCcc-----ccccccccccceEE
Q 005181 513 SIMPAEAVAKSLSSPPQYLQRLYLMGN-MKK-----LPDWIFKLENLIRLGLELSGLAEEP-----IRVLQASPNLLELR 581 (710)
Q Consensus 513 ~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~-----ip~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~ 581 (710)
..+.. ....+....++|+.|+|++| +.. ++..+..+++|+.|++++|.++... +..+..+++|+.|+
T Consensus 185 ~~~~~--l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 185 AGVRV--LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHH--HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHH--HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 22110 11122222348899999888 443 4666778899999999998876533 22333578899999
Q ss_pred eecccCCce----eEEecCCCCcccEEEeccCCCceeeeecC-----CcCCCccEEEEccCCCCCC----CccccccCCC
Q 005181 582 LTGTYDYEL----FHFEAGWFPKLQKLLLWDFVAVKSVIIEK-----GAMPDIRELEIGPCPLLME----IPIGIEHLRN 648 (710)
Q Consensus 582 L~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~ 648 (710)
+++|.+... ++..+..+++|+.|++++|.+....+..+ ...++|+.|++++|.+.+. ++..+..+++
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence 998887663 34445568889999999987654322222 2336899999999987654 4566778889
Q ss_pred CcEEEEecCcHH------HHH-------hc--ccCCcCcccc----CcCeEEEEEEeCCeeeEeehhhhccC
Q 005181 649 LKLLRFDCMVKQ------VYY-------MT--KDENWGKVTE----HIPDVLVTFLAAGRVFQYRKDILSSL 701 (710)
Q Consensus 649 L~~L~l~~~~~~------~~~-------~~--~~~~~n~~~~----~ip~~~~~~~~~l~~l~l~~N~l~~~ 701 (710)
|++|++++|... +.. .+ .++++|.+.. .+|..+... +.|+.|++++|.++..
T Consensus 343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN-HSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-CCCCEEECCSSSCCHH
T ss_pred ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC-CCccEEECCCCCCCHH
Confidence 999999988422 222 11 1266666554 666665543 8899999999988754
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=2e-20 Score=187.23 Aligned_cols=201 Identities=24% Similarity=0.221 Sum_probs=164.8
Q ss_pred cceEEEeccccccccCcchhcccCCCEEEcCCCccccccc-cccccccCcEEEccccccccCccCCchhhhhccCCCCcC
Q 005181 452 NLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPV-EIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQY 530 (710)
Q Consensus 452 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~ 530 (710)
+.+.++++++.++.+|..+. ++|++|++++|.+..++. .|.++++|++|++++ |.++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~------------------- 74 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQ------------------- 74 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCS-------------------
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccC-------------------
Confidence 57788888888888887653 678888888888877775 577788888888874 3332
Q ss_pred ccEEEEeecCCCCCc-cccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccC
Q 005181 531 LQRLYLMGNMKKLPD-WIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDF 609 (710)
Q Consensus 531 L~~L~L~~n~~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n 609 (710)
.+|. .|..+++|++|++++|.++...+..|..+++|+.|++++|.+....+..+..+++|+.|+|++|
T Consensus 75 -----------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 75 -----------TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp -----------CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred -----------eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 3333 4578999999999999999988888999999999999999998887777889999999999999
Q ss_pred CCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCe
Q 005181 610 VAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGR 689 (710)
Q Consensus 610 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~ 689 (710)
.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++ | .+..+|...+..++.|+
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~--------------N-~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN--------------N-QLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS--------------S-CCSCCCTTTTTTCTTCC
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCC--------------C-cCCcCCHHHhccccCCC
Confidence 98776666688999999999999998866666789999999999984 3 34466666555568999
Q ss_pred eeEeehhhhcc
Q 005181 690 VFQYRKDILSS 700 (710)
Q Consensus 690 ~l~l~~N~l~~ 700 (710)
.+++++|.+..
T Consensus 209 ~L~l~~N~~~c 219 (270)
T 2o6q_A 209 MLQLQENPWDC 219 (270)
T ss_dssp EEECCSSCBCC
T ss_pred EEEecCCCeeC
Confidence 99999999863
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=7.4e-20 Score=184.60 Aligned_cols=200 Identities=20% Similarity=0.114 Sum_probs=129.2
Q ss_pred CCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC-cccccCcccceEEEeccccccccCcchhcccCCCE
Q 005181 400 KDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEI 478 (710)
Q Consensus 400 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~ 478 (710)
.+++++.+.+.++.. ..+ |..+ .++++.|+|++|.++.+ +..+.++++|+.|++++|.++.++.. ..+++|++
T Consensus 8 ~l~~l~~l~~~~~~l--~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNL--TAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCC--SSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccCCccEEECCCCCC--CcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 456677777665543 122 2222 26788999999999876 56788999999999999999877654 78899999
Q ss_pred EEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEE
Q 005181 479 LDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGL 558 (710)
Q Consensus 479 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L 558 (710)
|++++|.+..+|..+..+++|++|+++ +|.+++..+ ..|..+++|+.|+|
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~-~N~l~~l~~-----------------------------~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPL-----------------------------GALRGLGELQELYL 131 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECC-SSCCCCCCS-----------------------------STTTTCTTCCEEEC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECC-CCcCcccCH-----------------------------HHHcCCCCCCEEEC
Confidence 999999999998888888888888888 455543321 23445555555555
Q ss_pred EeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCC
Q 005181 559 ELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLL 636 (710)
Q Consensus 559 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 636 (710)
++|.++..++..|..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|++.
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 555555544455555555555555555555444334445555555555555543 34444445555555665555543
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=2.5e-22 Score=212.42 Aligned_cols=234 Identities=15% Similarity=0.109 Sum_probs=137.3
Q ss_pred hhhhhhcccccccEEecCCCCCcc-----CcccccCcccceEEEecccccc----ccCcch-------hcccCCCEEEcC
Q 005181 419 FMNASIANFKLMKVLDLEDAPVDY-----LPEGVGNLFNLHYLSVKNTEVK----IIPKSI-------RNLLSLEILDLK 482 (710)
Q Consensus 419 ~~~~~~~~~~~L~~L~l~~n~~~~-----l~~~~~~l~~L~~L~l~~n~i~----~lp~~~-------~~l~~L~~L~l~ 482 (710)
.+...+..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344667788889999999998773 3445778889999999887544 344444 678899999999
Q ss_pred CCcccc-----ccccccccccCcEEEccccccccCccCCchhhhhccCCC--------CcCccEEEEeec-CC--CCC--
Q 005181 483 NTLVSE-----LPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSP--------PQYLQRLYLMGN-MK--KLP-- 544 (710)
Q Consensus 483 ~n~~~~-----~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~--------~~~L~~L~L~~n-~~--~ip-- 544 (710)
+|.++. +|..+..+++|++|+|++ |.++...+... ...+... .++|+.|+|++| ++ .+|
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l--~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHN-NGLGPQAGAKI--ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH--HHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcC-CCCCHHHHHHH--HHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 888765 677788889999999984 44432221110 0001000 035666666666 32 233
Q ss_pred -ccccCCCCccEEEEEeeccCC-----ccccccccccccceEEeecccCC----ceeEEecCCCCcccEEEeccCCCcee
Q 005181 545 -DWIFKLENLIRLGLELSGLAE-----EPIRVLQASPNLLELRLTGTYDY----ELFHFEAGWFPKLQKLLLWDFVAVKS 614 (710)
Q Consensus 545 -~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~~~----~~~~~~~~~~~~L~~L~L~~n~~~~~ 614 (710)
..+..+++|+.|++++|.++. ..+..+..+++|+.|+|++|.+. ..++..+..+++|+.|+|++|.+...
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 234455666666666666542 12225555666666666666553 22333445556666666666655433
Q ss_pred ----eeecC--CcCCCccEEEEccCCCCC----CCcccc-ccCCCCcEEEEe
Q 005181 615 ----VIIEK--GAMPDIRELEIGPCPLLM----EIPIGI-EHLRNLKLLRFD 655 (710)
Q Consensus 615 ----~~~~~--~~l~~L~~L~l~~n~~~~----~~p~~~-~~l~~L~~L~l~ 655 (710)
++..+ +.+++|+.|+|++|.+.. .+|..+ .++++|+.|+++
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 22333 235566666666665544 245444 345566666665
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=3.9e-22 Score=216.57 Aligned_cols=308 Identities=15% Similarity=0.084 Sum_probs=182.1
Q ss_pred CceeEEEEEccCccccc--c-cCCCCceeEEEeecCCCCCc--chhhhhhcccccccEEecCCCCCccC-ccc-ccCcc-
Q 005181 380 SKTRRIAIQRSIDDGAL--E-SIKDSKVRSVFLFNVDKLPD--SFMNASIANFKLMKVLDLEDAPVDYL-PEG-VGNLF- 451 (710)
Q Consensus 380 ~~~r~l~l~~~~~~~~~--~-~~~~~~l~~l~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~-~~~l~- 451 (710)
++++++.+..+...... . ...+++++.|.+.++..... ..++..+..+++|++|++++|.+... +.. ...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677777766654321 1 34567777887777764211 13456677777788888888777632 222 22333
Q ss_pred ---cceEEEecccccc-----ccCcchhcccCCCEEEcCCCcccccc-cc-----ccccccCcEEEccccccccCccCCc
Q 005181 452 ---NLHYLSVKNTEVK-----IIPKSIRNLLSLEILDLKNTLVSELP-VE-----IRNLKKLRYLMVYRYNYTTGSIMPA 517 (710)
Q Consensus 452 ---~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~~~~~-~~-----~~~l~~L~~L~l~~~n~~~~~~~~~ 517 (710)
+|++|++++|.++ .+|..+..+++|++|++++|.++... .. ....++|++|++++ +.+++....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY-CSLSAASCE- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCBGGGHH-
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCC-CCCCHHHHH-
Confidence 5788888887776 34666777778888888877665321 11 12245678888874 444432211
Q ss_pred hhhhhccCCCCcCccEEEEeec-CCCC-Cccc-----cCCCCccEEEEEeeccCCc----cccccccccccceEEeeccc
Q 005181 518 EAVAKSLSSPPQYLQRLYLMGN-MKKL-PDWI-----FKLENLIRLGLELSGLAEE----PIRVLQASPNLLELRLTGTY 586 (710)
Q Consensus 518 ~~~~~~l~~~~~~L~~L~L~~n-~~~i-p~~~-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~ 586 (710)
.+.......++|+.|++++| +... +..+ ...++|+.|++++|.++.. .+..+..+++|++|++++|.
T Consensus 161 --~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 161 --PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp --HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred --HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 01111122347778887777 3221 1111 1356777888887777653 34556667778888887776
Q ss_pred CCcee-----EEecCCCCcccEEEeccCCCcee----eeecCCcCCCccEEEEccCCCCCCCccccc-----cCCCCcEE
Q 005181 587 DYELF-----HFEAGWFPKLQKLLLWDFVAVKS----VIIEKGAMPDIRELEIGPCPLLMEIPIGIE-----HLRNLKLL 652 (710)
Q Consensus 587 ~~~~~-----~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-----~l~~L~~L 652 (710)
+.... +..+..+++|+.|++++|.+... ++..+..+++|+.|++++|.+....+..+. ..++|+.|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 65421 22233567788888887766543 444555677788888887776433222222 23577888
Q ss_pred EEecCcHHHHHhcccCCcCccccC----cCeEEEEEEeCCeeeEeehhhhccCcHHHH
Q 005181 653 RFDCMVKQVYYMTKDENWGKVTEH----IPDVLVTFLAAGRVFQYRKDILSSLSPEYV 706 (710)
Q Consensus 653 ~l~~~~~~~~~~~~~~~~n~~~~~----ip~~~~~~~~~l~~l~l~~N~l~~~~~~~~ 706 (710)
++++| .+... +|..+.. ++.|+.|++++|.++......+
T Consensus 319 ~L~~n--------------~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l 361 (461)
T 1z7x_W 319 WVKSC--------------SFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGVREL 361 (461)
T ss_dssp ECTTS--------------CCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHHHHHH
T ss_pred EcCCC--------------CCchHHHHHHHHHHhh-CCCccEEEccCCccccccHHHH
Confidence 87744 33332 4443333 3899999999999986654443
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.2e-19 Score=185.04 Aligned_cols=204 Identities=20% Similarity=0.189 Sum_probs=170.5
Q ss_pred EEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEcccccccc
Q 005181 432 VLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTT 511 (710)
Q Consensus 432 ~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~ 511 (710)
.+.+..+.+..+. ....+++|+.|++++|.++.+| .+..+++|++|++++|.+..++. +..+++|++|++++ |.++
T Consensus 23 ~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~-n~l~ 98 (308)
T 1h6u_A 23 KIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG-NPLK 98 (308)
T ss_dssp HHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS-CCCS
T ss_pred HHHhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccC-CcCC
Confidence 3456666665442 3457899999999999999887 68999999999999999999988 99999999999995 5555
Q ss_pred CccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCce
Q 005181 512 GSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYEL 590 (710)
Q Consensus 512 ~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 590 (710)
+.. .+ ..+++|+.|+|++| +..++. +..+++|+.|++++|.+++..+ ++.+++|+.|++++|.+...
T Consensus 99 ~~~--------~~-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 99 NVS--------AI-AGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp CCG--------GG-TTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred Cch--------hh-cCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC
Confidence 432 22 33459999999999 777765 8999999999999999988654 88999999999999998876
Q ss_pred eEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecC
Q 005181 591 FHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 591 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 657 (710)
.+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|
T Consensus 167 ~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 167 TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEEE
T ss_pred hh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc-cc-cccCCCCCCEEEccCC
Confidence 54 8899999999999998766543 7889999999999999875 44 3899999999999964
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=3.8e-21 Score=199.45 Aligned_cols=208 Identities=14% Similarity=0.106 Sum_probs=124.5
Q ss_pred hhhhccc--ccccEEecCCCCCccCcccccCcccceEEEecccccc-c-cCcchhcccCCCEEEcCCCccc-cccccccc
Q 005181 421 NASIANF--KLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVK-I-IPKSIRNLLSLEILDLKNTLVS-ELPVEIRN 495 (710)
Q Consensus 421 ~~~~~~~--~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~-~-lp~~~~~l~~L~~L~l~~n~~~-~~~~~~~~ 495 (710)
+..+..+ ++++.|++++|.+...+..+..+++|+.|++++|.++ . +|..+..+++|++|++++|.++ ..+..+..
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 3455666 7899999999988876556778899999999999887 3 7777888999999999988765 55667888
Q ss_pred cccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEee-ccCCc-ccccccc
Q 005181 496 LKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELS-GLAEE-PIRVLQA 573 (710)
Q Consensus 496 l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~ 573 (710)
+++|++|++++|..+++.. ++..+..+++|++|++++| .++.. .+..+..
T Consensus 141 ~~~L~~L~L~~~~~l~~~~----------------------------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFA----------------------------LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp CTTCSEEECTTCBSCCHHH----------------------------HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHH----------------------------HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 8899999998653444321 1222344455555555555 44432 2334445
Q ss_pred cc-ccceEEeecc--cCC-ceeEEecCCCCcccEEEeccCC-CceeeeecCCcCCCccEEEEccCC-CCCCCccccccCC
Q 005181 574 SP-NLLELRLTGT--YDY-ELFHFEAGWFPKLQKLLLWDFV-AVKSVIIEKGAMPDIRELEIGPCP-LLMEIPIGIEHLR 647 (710)
Q Consensus 574 l~-~L~~L~L~~n--~~~-~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~l~ 647 (710)
++ +|+.|++++| .+. ...+..+..+++|+.|++++|. +....+..+..+++|+.|++++|. +.......+.+++
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 272 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence 55 5555555555 222 1122233445555555555555 333333444555556666665553 1111111345555
Q ss_pred CCcEEEEec
Q 005181 648 NLKLLRFDC 656 (710)
Q Consensus 648 ~L~~L~l~~ 656 (710)
+|+.|++++
T Consensus 273 ~L~~L~l~~ 281 (336)
T 2ast_B 273 TLKTLQVFG 281 (336)
T ss_dssp TCCEEECTT
T ss_pred CCCEEeccC
Confidence 666666553
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=9.9e-19 Score=172.75 Aligned_cols=178 Identities=19% Similarity=0.132 Sum_probs=125.8
Q ss_pred ccccEEecCCCCCccCcccccCcccceEEEeccccccccCc-chhcccCCCEEEcCCCcccccccc-ccccccCcEEEcc
Q 005181 428 KLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPK-SIRNLLSLEILDLKNTLVSELPVE-IRNLKKLRYLMVY 505 (710)
Q Consensus 428 ~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~ 505 (710)
...++++++++.++.+|..+. ++|+.|++++|.++.++. .|.++++|++|+|++|.+..+++. +..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457889999999998887664 689999999999986554 588899999999999888777654 7788888888888
Q ss_pred ccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecc
Q 005181 506 RYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGT 585 (710)
Q Consensus 506 ~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 585 (710)
+ |.+++.. +..|..+++|+.|+|++|.++...+..|..+++|+.|+|++|
T Consensus 92 ~-n~l~~~~-----------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 92 N-NQLASLP-----------------------------LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp T-SCCCCCC-----------------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred C-CcccccC-----------------------------hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 4 4444222 223456666677777777666665556666667777777766
Q ss_pred cCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCC
Q 005181 586 YDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLM 637 (710)
Q Consensus 586 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 637 (710)
.+....+..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|++..
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6665544455666667777776666655555556666777777777776654
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=6.4e-19 Score=172.82 Aligned_cols=192 Identities=15% Similarity=0.107 Sum_probs=136.9
Q ss_pred cccEEecCCCCCccCcc-cccCcccceEEEecccc-ccccCc-chhcccCCCEEEcCC-Cccccccc-cccccccCcEEE
Q 005181 429 LMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTE-VKIIPK-SIRNLLSLEILDLKN-TLVSELPV-EIRNLKKLRYLM 503 (710)
Q Consensus 429 ~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~-i~~lp~-~~~~l~~L~~L~l~~-n~~~~~~~-~~~~l~~L~~L~ 503 (710)
+|++|++++|.++.+|. .+.++++|++|++++|. ++.++. .|.++++|++|++++ |.++.+|+ .|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776644 56777777888887775 776655 477777788888776 77777764 467777788887
Q ss_pred ccccccccCccCCchhhhhccCCCCcCcc---EEEEeec--CCCCCc-cccCCCCcc-EEEEEeeccCCccccccccccc
Q 005181 504 VYRYNYTTGSIMPAEAVAKSLSSPPQYLQ---RLYLMGN--MKKLPD-WIFKLENLI-RLGLELSGLAEEPIRVLQASPN 576 (710)
Q Consensus 504 l~~~n~~~~~~~~~~~~~~~l~~~~~~L~---~L~L~~n--~~~ip~-~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~ 576 (710)
+++ |.+++.. . +...++|+ .|++++| +..+|. .|.++++|+ .|++++|.++..++..|.. ++
T Consensus 112 l~~-n~l~~lp--------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~ 180 (239)
T 2xwt_C 112 IFN-TGLKMFP--------D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TK 180 (239)
T ss_dssp EEE-ECCCSCC--------C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CE
T ss_pred CCC-CCCcccc--------c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CC
Confidence 774 4444421 1 12223454 7888776 455554 478889999 9999999988665556655 78
Q ss_pred cceEEeeccc-CCceeEEecCCC-CcccEEEeccCCCceeeeecCCcCCCccEEEEccCC
Q 005181 577 LLELRLTGTY-DYELFHFEAGWF-PKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCP 634 (710)
Q Consensus 577 L~~L~L~~n~-~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 634 (710)
|+.|++++|. +....+..+..+ ++|+.|++++|.+.. +|.. .+++|+.|++++|.
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 9999999994 776656667788 899999999988764 4433 67888999988764
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=3.5e-19 Score=182.04 Aligned_cols=227 Identities=17% Similarity=0.114 Sum_probs=135.4
Q ss_pred CCCCceeEEEeecCCCCCcchhhh--hhcccccccEEecCCCCCcc-Ccccc--cCcccceEEEeccccccc-cC----c
Q 005181 399 IKDSKVRSVFLFNVDKLPDSFMNA--SIANFKLMKVLDLEDAPVDY-LPEGV--GNLFNLHYLSVKNTEVKI-IP----K 468 (710)
Q Consensus 399 ~~~~~l~~l~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~-l~~~~--~~l~~L~~L~l~~n~i~~-lp----~ 468 (710)
....+++.+.+.++... ...... .+..+++|++|++++|.+.. .|..+ ..+++|++|++++|.++. .+ .
T Consensus 61 ~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 61 VKALRVRRLTVGAAQVP-AQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp GSSCCCCEEEECSCCCB-HHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hhhcceeEEEEeCCcCC-HHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 34455677777666542 222111 22345678999999998874 46666 788889999999988873 22 2
Q ss_pred chhcccCCCEEEcCCCcccccc-ccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccc
Q 005181 469 SIRNLLSLEILDLKNTLVSELP-VEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWI 547 (710)
Q Consensus 469 ~~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~ 547 (710)
.+..+++|++|++++|.+..++ ..+..+++|++|++++ |.+.+... + ..+..+
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~--------~-----------------~~~~~~ 193 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSD-NPGLGERG--------L-----------------MAALCP 193 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCS-CTTCHHHH--------H-----------------HTTSCT
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCC-CCCccchh--------h-----------------hHHHhh
Confidence 3456888999999888887766 4677888888888885 43332100 0 001112
Q ss_pred cCCCCccEEEEEeeccCCcccc---ccccccccceEEeecccCCceeEEecCCC---CcccEEEeccCCCceeeeecCCc
Q 005181 548 FKLENLIRLGLELSGLAEEPIR---VLQASPNLLELRLTGTYDYELFHFEAGWF---PKLQKLLLWDFVAVKSVIIEKGA 621 (710)
Q Consensus 548 ~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L~~n~~~~~~~~~~~~~---~~L~~L~L~~n~~~~~~~~~~~~ 621 (710)
..+++|++|+|++|.++..... .++.+++|++|+|++|.+....|..+..+ ++|+.|+|++|.+. .+|..+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~- 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP- 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence 4455566666666665432111 23455666666666666655544334333 56666666666655 3444432
Q ss_pred CCCccEEEEccCCCCCCCccccccCCCCcEEEEecC
Q 005181 622 MPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 622 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 657 (710)
++|+.|++++|++.+ +|. +..+++|+.|++++|
T Consensus 272 -~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 272 -AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp -SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSST
T ss_pred -CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCC
Confidence 566777777666653 332 556666777777654
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=1.3e-18 Score=171.96 Aligned_cols=177 Identities=20% Similarity=0.137 Sum_probs=147.7
Q ss_pred ccceEEEeccccccccCcchhcccCCCEEEcCCCccccccc-cccccccCcEEEccccccccCccCCchhhhhccCCCCc
Q 005181 451 FNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPV-EIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQ 529 (710)
Q Consensus 451 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~ 529 (710)
...+.++++++.++.+|..+. ++|+.|+|++|.+..+++ .+.++++|++|++++ |.+++..
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~--------------- 75 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLS--------------- 75 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCC---------------
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC-CcCCccC---------------
Confidence 456788888888888887764 678888888888877765 477788888888874 4443221
Q ss_pred CccEEEEeecCCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccC
Q 005181 530 YLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDF 609 (710)
Q Consensus 530 ~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n 609 (710)
|..+..+++|+.|+|++|.++...+..|..+++|+.|+|++|.+....+..+..+++|+.|+|++|
T Consensus 76 --------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 76 --------------AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp --------------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 345788999999999999999988889999999999999999998877666788999999999999
Q ss_pred CCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcH
Q 005181 610 VAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVK 659 (710)
Q Consensus 610 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~ 659 (710)
.+.+..+..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|+.
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 98776666789999999999999999876667899999999999998753
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=3.2e-20 Score=196.26 Aligned_cols=254 Identities=19% Similarity=0.138 Sum_probs=186.2
Q ss_pred CCCCceeEEEeecCCCCCcc--hhhhhhcccccccEEecCCCCCc----cCcccc-------cCcccceEEEeccccccc
Q 005181 399 IKDSKVRSVFLFNVDKLPDS--FMNASIANFKLMKVLDLEDAPVD----YLPEGV-------GNLFNLHYLSVKNTEVKI 465 (710)
Q Consensus 399 ~~~~~l~~l~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~----~l~~~~-------~~l~~L~~L~l~~n~i~~ 465 (710)
..+++++.|.+.++...... .+...+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|.++.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 35678999999887652211 13445788999999999998655 334443 688999999999999985
Q ss_pred -----cCcchhcccCCCEEEcCCCcccc-----cccccccc---------ccCcEEEccccccccCccCCchhhhhccCC
Q 005181 466 -----IPKSIRNLLSLEILDLKNTLVSE-----LPVEIRNL---------KKLRYLMVYRYNYTTGSIMPAEAVAKSLSS 526 (710)
Q Consensus 466 -----lp~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~l---------~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~ 526 (710)
+|..+..+++|++|+|++|.++. ++..+..+ ++|++|++++ |.++....+. +.....
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~---l~~~l~ 184 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENGSMKE---WAKTFQ 184 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGGGHHH---HHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC-CCCCcHHHHH---HHHHHH
Confidence 77788999999999999998763 33334455 8999999994 5554222211 111122
Q ss_pred CCcCccEEEEeec-CC------CCCccccCCCCccEEEEEeeccC----CccccccccccccceEEeecccCCce----e
Q 005181 527 PPQYLQRLYLMGN-MK------KLPDWIFKLENLIRLGLELSGLA----EEPIRVLQASPNLLELRLTGTYDYEL----F 591 (710)
Q Consensus 527 ~~~~L~~L~L~~n-~~------~ip~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~~~~~----~ 591 (710)
..++|+.|+|++| +. .+|..+..+++|+.|+|++|.++ ...+..+..+++|+.|+|++|.+... +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 3348999999999 44 23447789999999999999986 45677888999999999999998765 2
Q ss_pred EEec--CCCCcccEEEeccCCCce----eeeecC-CcCCCccEEEEccCCCCCCCc--ccc-ccCCCCcEEEEec
Q 005181 592 HFEA--GWFPKLQKLLLWDFVAVK----SVIIEK-GAMPDIRELEIGPCPLLMEIP--IGI-EHLRNLKLLRFDC 656 (710)
Q Consensus 592 ~~~~--~~~~~L~~L~L~~n~~~~----~~~~~~-~~l~~L~~L~l~~n~~~~~~p--~~~-~~l~~L~~L~l~~ 656 (710)
+..+ +.+++|+.|+|++|.+.. .+|..+ ..+++|+.|++++|++.+..+ ..+ ..+++++.+++..
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 3334 448999999999999877 466666 568999999999999987653 222 3345555556653
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=1.3e-19 Score=189.63 Aligned_cols=238 Identities=12% Similarity=0.097 Sum_probs=165.9
Q ss_pred chhhhhhcccccccEEecCCCCCccCc-----ccccCcc-cceEEEecccccccc-Ccchhcc-----cCCCEEEcCCCc
Q 005181 418 SFMNASIANFKLMKVLDLEDAPVDYLP-----EGVGNLF-NLHYLSVKNTEVKII-PKSIRNL-----LSLEILDLKNTL 485 (710)
Q Consensus 418 ~~~~~~~~~~~~L~~L~l~~n~~~~l~-----~~~~~l~-~L~~L~l~~n~i~~l-p~~~~~l-----~~L~~L~l~~n~ 485 (710)
...+..+...++|++|+|++|.++..+ ..+.+++ +|+.|++++|.++.. +..+..+ ++|++|+|++|.
T Consensus 12 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 12 NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 345566666677999999999888664 5677788 899999999988844 4456654 889999999888
Q ss_pred ccccccc-----cccc-ccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CC-----CCCccccCCC-C
Q 005181 486 VSELPVE-----IRNL-KKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MK-----KLPDWIFKLE-N 552 (710)
Q Consensus 486 ~~~~~~~-----~~~l-~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~-----~ip~~~~~l~-~ 552 (710)
++..+.. +..+ ++|++|++++ |.+++..+. .....+...+.+|++|+|++| ++ .++..+..++ +
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGW-NDFSSKSSS--EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCS-SCGGGSCHH--HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcC-CcCCcHHHH--HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence 8765542 4445 7899999984 555544322 111223333458999999988 44 3344555665 8
Q ss_pred ccEEEEEeeccCCccccccc----cc-cccceEEeecccCCce----eEEecCC-CCcccEEEeccCCCceeee----ec
Q 005181 553 LIRLGLELSGLAEEPIRVLQ----AS-PNLLELRLTGTYDYEL----FHFEAGW-FPKLQKLLLWDFVAVKSVI----IE 618 (710)
Q Consensus 553 L~~L~L~~n~l~~~~~~~l~----~l-~~L~~L~L~~n~~~~~----~~~~~~~-~~~L~~L~L~~n~~~~~~~----~~ 618 (710)
|+.|+|++|.++...+..+. .+ ++|+.|+|++|.+... ++..+.. .++|+.|+|++|.+....+ ..
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHT
T ss_pred ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHH
Confidence 99999999998776654443 44 5899999999987762 2222333 4589999999998765432 34
Q ss_pred CCcCCCccEEEEccCCCCCC-------CccccccCCCCcEEEEecCc
Q 005181 619 KGAMPDIRELEIGPCPLLME-------IPIGIEHLRNLKLLRFDCMV 658 (710)
Q Consensus 619 ~~~l~~L~~L~l~~n~~~~~-------~p~~~~~l~~L~~L~l~~~~ 658 (710)
+..+++|+.|++++|.+... ++..+.++++|+.|++++|+
T Consensus 249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 57788999999999984322 33457788889999998874
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.7e-18 Score=189.29 Aligned_cols=187 Identities=18% Similarity=0.130 Sum_probs=141.0
Q ss_pred cccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccc
Q 005181 429 LMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYN 508 (710)
Q Consensus 429 ~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n 508 (710)
+|+.|++++|.++.+|..+ +++|++|++++|.++.+| ..+++|++|++++|.++.+|. +.+ +|++|+++ +|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls-~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD-NN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC-SS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC-CC
Confidence 8999999999998888766 378999999999999888 457899999999999888888 655 89999998 46
Q ss_pred cccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccC
Q 005181 509 YTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYD 587 (710)
Q Consensus 509 ~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 587 (710)
.+++.. . .+++|+.|+|++| +..+|. .+++|+.|+|++|.+++. |. |. ++|+.|+|++|.+
T Consensus 131 ~l~~lp--------~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 131 QLTMLP--------E---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp CCSCCC--------C---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCC
T ss_pred cCCCCC--------C---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCC
Confidence 666522 1 3457888888888 666776 567888888888888774 33 54 7888888888887
Q ss_pred CceeEEecCCCCcc-------cEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCC
Q 005181 588 YELFHFEAGWFPKL-------QKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLR 647 (710)
Q Consensus 588 ~~~~~~~~~~~~~L-------~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 647 (710)
..++. +.. +| +.|+|++|.+. .+|..+..+++|+.|+|++|++.+.+|..+..++
T Consensus 193 ~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 193 ESLPA--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SSCCC--CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred Cchhh--HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 75433 332 66 88888888765 4666666788888888888888777776665543
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=178.27 Aligned_cols=225 Identities=14% Similarity=0.035 Sum_probs=157.6
Q ss_pred cceEEEecccccc--ccCc--chhcccCCCEEEcCCCccc-cccccc--cccccCcEEEccccccccCccCCchhhhhcc
Q 005181 452 NLHYLSVKNTEVK--IIPK--SIRNLLSLEILDLKNTLVS-ELPVEI--RNLKKLRYLMVYRYNYTTGSIMPAEAVAKSL 524 (710)
Q Consensus 452 ~L~~L~l~~n~i~--~lp~--~~~~l~~L~~L~l~~n~~~-~~~~~~--~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l 524 (710)
.++.+.++++.++ .+.. .+..+++|++|++++|.+. ..|..+ ..+++|++|+++ +|.+++..+... ...+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls-~n~i~~~~~~~~--~~~~ 141 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLR-NVSWATGRSWLA--ELQQ 141 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEE-SCCCSSTTSSHH--HHHT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEee-cccccchhhhhH--HHHh
Confidence 4566666666554 1111 1223466777777777654 444455 677778888887 355554332100 0011
Q ss_pred CCCCcCccEEEEeec-CCCC-CccccCCCCccEEEEEeeccCCc---c-ccccccccccceEEeecccCCceeEE---ec
Q 005181 525 SSPPQYLQRLYLMGN-MKKL-PDWIFKLENLIRLGLELSGLAEE---P-IRVLQASPNLLELRLTGTYDYELFHF---EA 595 (710)
Q Consensus 525 ~~~~~~L~~L~L~~n-~~~i-p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~l~~L~~L~L~~n~~~~~~~~---~~ 595 (710)
. ..++|+.|+|++| +..+ |..+..+++|++|+|++|.+.+. . ...++.+++|+.|+|++|.+...... .+
T Consensus 142 ~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 142 W-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp T-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred h-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 2 3458888888888 5555 46788999999999999997642 1 23347899999999999998653221 24
Q ss_pred CCCCcccEEEeccCCCceeeeecCCcC---CCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCc
Q 005181 596 GWFPKLQKLLLWDFVAVKSVIIEKGAM---PDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGK 672 (710)
Q Consensus 596 ~~~~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~ 672 (710)
..+++|++|+|++|.+.+..|..+..+ ++|+.|++++|.+. .+|..+. ++|+.|+++ +|+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls--------------~N~ 283 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS--------------SNR 283 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC--------------SCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC--------------CCc
Confidence 678999999999999888777766666 79999999999987 7787774 899999998 434
Q ss_pred cccCcCeEEEEEEeCCeeeEeehhhhcc
Q 005181 673 VTEHIPDVLVTFLAAGRVFQYRKDILSS 700 (710)
Q Consensus 673 ~~~~ip~~~~~~~~~l~~l~l~~N~l~~ 700 (710)
+. .+|. +..++.|+.|++++|.|+.
T Consensus 284 l~-~~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 284 LN-RAPQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC-SCCC--TTSCCCCSCEECSSTTTSC
T ss_pred CC-CCch--hhhCCCccEEECcCCCCCC
Confidence 44 4444 2345899999999999974
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=2.5e-17 Score=171.26 Aligned_cols=216 Identities=15% Similarity=0.062 Sum_probs=144.5
Q ss_pred ccccEEecCCCCCccCcc-cccCcccceEEEecccccc-ccCcc-hhcccCCCE-EEcCCCccccccc-cccccccCcEE
Q 005181 428 KLMKVLDLEDAPVDYLPE-GVGNLFNLHYLSVKNTEVK-IIPKS-IRNLLSLEI-LDLKNTLVSELPV-EIRNLKKLRYL 502 (710)
Q Consensus 428 ~~L~~L~l~~n~~~~l~~-~~~~l~~L~~L~l~~n~i~-~lp~~-~~~l~~L~~-L~l~~n~~~~~~~-~~~~l~~L~~L 502 (710)
+++++|+|++|.|+.+|. +|.++++|++|+|++|.+. .+|.. |.++++|.+ +.+++|.+..+++ .|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 567888888888888764 5778888888888888875 45543 677777665 4445677777744 57778888888
Q ss_pred EccccccccCccCCchhhhhccCCCCcCccEEEEeec--CCCCCc-cccCC-CCccEEEEEeeccCCccccccccccccc
Q 005181 503 MVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN--MKKLPD-WIFKL-ENLIRLGLELSGLAEEPIRVLQASPNLL 578 (710)
Q Consensus 503 ~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n--~~~ip~-~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 578 (710)
+++ +|.++..... .+ ....++..|++.++ +..+|. .|..+ ..++.|+|++|.++...+..| ...+|+
T Consensus 110 ~l~-~n~l~~~~~~------~~-~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~ 180 (350)
T 4ay9_X 110 LIS-NTGIKHLPDV------HK-IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLD 180 (350)
T ss_dssp EEE-EECCSSCCCC------TT-CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEE
T ss_pred ccc-ccccccCCch------hh-cccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchh
Confidence 887 4555443322 11 12225667777654 555554 44444 357788888888877555555 445788
Q ss_pred eEEeec-ccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEec
Q 005181 579 ELRLTG-TYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDC 656 (710)
Q Consensus 579 ~L~L~~-n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 656 (710)
.|++++ |.+..+.+..|..+++|+.|+|++|.+... |. ..+.+|+.|.+.+|...+.+| .+..+++|+.+++++
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l-p~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL-PS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC-CS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc-Ch--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 888874 556555555677888888888888876543 32 235566777777666666777 477888888888864
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=4.8e-18 Score=176.66 Aligned_cols=222 Identities=16% Similarity=0.102 Sum_probs=163.6
Q ss_pred cEEecCCCCCccCcccccCcccceEEEeccccccccCcc-hhcccCCCEEEcCCCcc-ccccc-cccccccCcEEEcccc
Q 005181 431 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKS-IRNLLSLEILDLKNTLV-SELPV-EIRNLKKLRYLMVYRY 507 (710)
Q Consensus 431 ~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~-~~~~~-~~~~l~~L~~L~l~~~ 507 (710)
++++.+++.++.+|..+ .++++.|+|++|+|+.+|+. |.++++|++|+|++|.+ +.+|. .|.++++|.++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56788888888888766 36788888988888888764 78888888888888876 44554 4667777766544433
Q ss_pred ccccCccCCchhhhhccCCCCcCccEEEEeecCCCC-CccccCCCCccEEEEEeeccCCccccccccccccceEEeec-c
Q 005181 508 NYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKL-PDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTG-T 585 (710)
Q Consensus 508 n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~i-p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n 585 (710)
|.++ .+ |..|..+++|+.|++++|.++...+..+....++..|++.+ +
T Consensus 90 N~l~------------------------------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~ 139 (350)
T 4ay9_X 90 NNLL------------------------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139 (350)
T ss_dssp TTCC------------------------------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT
T ss_pred Cccc------------------------------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccc
Confidence 4333 23 45678999999999999999988777777788889999976 4
Q ss_pred cCCceeEEecCCCC-cccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCcc-ccccCCCCcEEEEecCcHHHHH
Q 005181 586 YDYELFHFEAGWFP-KLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPI-GIEHLRNLKLLRFDCMVKQVYY 663 (710)
Q Consensus 586 ~~~~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~ 663 (710)
.+....+..+..++ .++.|+|++|.+.. ++......++|+.|++.+|+..+.+|. .|.++++|+.|++++
T Consensus 140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~------- 211 (350)
T 4ay9_X 140 NIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR------- 211 (350)
T ss_dssp TCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-------
T ss_pred ccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-------
Confidence 55555444555554 68999999998754 555555678899999987666667775 579999999999983
Q ss_pred hcccCCcCccccCcCeEEEEEEeCCeeeEe-ehhhhccCcH
Q 005181 664 MTKDENWGKVTEHIPDVLVTFLAAGRVFQY-RKDILSSLSP 703 (710)
Q Consensus 664 ~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l-~~N~l~~~~~ 703 (710)
|.+..+|...+. .|+.|.+ +.+.++.+|+
T Consensus 212 --------N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 212 --------TRIHSLPSYGLE---NLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp --------SCCCCCCSSSCT---TCCEEECTTCTTCCCCCC
T ss_pred --------CCcCccChhhhc---cchHhhhccCCCcCcCCC
Confidence 456688876544 4555544 3466777774
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=1e-17 Score=169.01 Aligned_cols=170 Identities=22% Similarity=0.239 Sum_probs=100.4
Q ss_pred hcccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEE
Q 005181 424 IANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLM 503 (710)
Q Consensus 424 ~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~ 503 (710)
+..+++|+.|++++|.+..++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.+..+|. +..+++|++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 345677777777777777665 36677777777777777776655 7777777777777777776654 67777777777
Q ss_pred ccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEe
Q 005181 504 VYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRL 582 (710)
Q Consensus 504 l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 582 (710)
+++ |.+++.. .+. ..++|+.|++++| +..+ ..+..+++|+.|++++|.+++..+ +..+++|+.|++
T Consensus 119 L~~-n~i~~~~--------~l~-~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 119 LEH-NGISDIN--------GLV-HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp CTT-SCCCCCG--------GGG-GCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCC-CcCCCCh--------hhc-CCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 773 4443321 111 1235555555555 3333 344555555555555555554333 555555555555
Q ss_pred ecccCCceeEEecCCCCcccEEEeccCCC
Q 005181 583 TGTYDYELFHFEAGWFPKLQKLLLWDFVA 611 (710)
Q Consensus 583 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~ 611 (710)
++|.+.... .+..+++|+.|++++|++
T Consensus 186 ~~N~i~~l~--~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 186 SKNHISDLR--ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CSSCCCBCG--GGTTCTTCSEEEEEEEEE
T ss_pred CCCcCCCCh--hhccCCCCCEEECcCCcc
Confidence 555554431 244555555555555543
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.2e-17 Score=159.80 Aligned_cols=175 Identities=23% Similarity=0.234 Sum_probs=93.1
Q ss_pred cEEecCCCCCccCcccccCcccceEEEeccccccccCcc-hhcccCCCEEEcCCCcccccccc-ccccccCcEEEccccc
Q 005181 431 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKS-IRNLLSLEILDLKNTLVSELPVE-IRNLKKLRYLMVYRYN 508 (710)
Q Consensus 431 ~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~n 508 (710)
+.++.+++.++.+|..+ .++|++|++++|.++.++.. +..+++|++|++++|.++.+|.. +..+++|++|++++ |
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-N 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC-C
Confidence 46677777777776544 45778888888887766554 67778888888887777777654 46677777777773 4
Q ss_pred cccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCc-cccCCCCccEEEEEeeccCCccccccccccccceEEeeccc
Q 005181 509 YTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPD-WIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTY 586 (710)
Q Consensus 509 ~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 586 (710)
.+++..+. .+...++|+.|+|++| +..+|. .+..+++|+.|++++|.+++..+..|..+++|+.|++++|.
T Consensus 87 ~l~~~~~~-------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 87 QLQSLPNG-------VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCCCTT-------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCccCHh-------HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 44322211 1111223333333333 233322 23444555555555555444444444444445555554443
Q ss_pred CCceeEEecCCCCcccEEEeccCCCceeeeecCCcC
Q 005181 587 DYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAM 622 (710)
Q Consensus 587 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l 622 (710)
+. +.+++|+.|+++.|.+.+.+|.+++.+
T Consensus 160 ~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 160 WD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp BC-------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ee-------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 22 223444444444444444444444333
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=1.9e-19 Score=186.60 Aligned_cols=211 Identities=18% Similarity=0.138 Sum_probs=127.6
Q ss_pred cccccccEEecCCCCCcc--CcccccCcccceEEEecccccc-ccCcchhcccCCCEEEcCCC-ccc--ccccccccccc
Q 005181 425 ANFKLMKVLDLEDAPVDY--LPEGVGNLFNLHYLSVKNTEVK-IIPKSIRNLLSLEILDLKNT-LVS--ELPVEIRNLKK 498 (710)
Q Consensus 425 ~~~~~L~~L~l~~n~~~~--l~~~~~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n-~~~--~~~~~~~~l~~ 498 (710)
..+++|++|++++|.+.. ++..+..+++|+.|++++|.++ ..+..+..+++|++|++++| .++ .++..+.++++
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 456666677777666552 5555666667777777766666 45555666667777777666 454 25555666667
Q ss_pred CcEEEccccccccCccCCchhhhhccCCCCc-CccEEEEeec-C----CCCCccccCCCCccEEEEEeec-cCCcccccc
Q 005181 499 LRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQ-YLQRLYLMGN-M----KKLPDWIFKLENLIRLGLELSG-LAEEPIRVL 571 (710)
Q Consensus 499 L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~-~L~~L~L~~n-~----~~ip~~~~~l~~L~~L~L~~n~-l~~~~~~~l 571 (710)
|++|++++|..+++...+ ......+ +|+.|+|++| . ..+|..+..+++|+.|++++|. ++...+..+
T Consensus 170 L~~L~l~~~~~l~~~~~~------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQ------VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp CCEEECCCCTTCCHHHHH------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred CCEEcCCCCCCcChHHHH------HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 777777643244322111 1112223 5666666665 1 2345556678888888888888 666667777
Q ss_pred ccccccceEEeeccc-CCceeEEecCCCCcccEEEeccCCCceeeeecCCcC-CCccEEEEccCCCCCCCcccccc
Q 005181 572 QASPNLLELRLTGTY-DYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAM-PDIRELEIGPCPLLMEIPIGIEH 645 (710)
Q Consensus 572 ~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~p~~~~~ 645 (710)
..+++|+.|++++|. +.......+..+++|+.|++++| +.. ..+..+ .+|..|++++|.+.+..|..+..
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 888888888888774 22211123566788888888887 221 112222 23556668888887777766553
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=1.3e-17 Score=184.54 Aligned_cols=172 Identities=21% Similarity=0.243 Sum_probs=126.7
Q ss_pred hcccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEE
Q 005181 424 IANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLM 503 (710)
Q Consensus 424 ~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~ 503 (710)
+..+++|+.|++++|.+..++ .+..+++|+.|+|++|.++.+++ +..+++|+.|+|++|.+..+| .+..+++|++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 456777888888888887776 47788888888888888887765 778888888888888887776 577888888888
Q ss_pred ccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEe
Q 005181 504 VYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRL 582 (710)
Q Consensus 504 l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 582 (710)
|++ |.+++.. .+ ..+++|+.|+|++| +..+ ..+..+++|+.|+|++|.+++..+ +..+++|+.|+|
T Consensus 116 Ls~-N~l~~l~--------~l-~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 116 LEH-NGISDIN--------GL-VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp CTT-SCCCCCG--------GG-GGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ecC-CCCCCCc--------cc-cCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 884 4454321 12 22347777777777 5555 457778888888888888877555 777888888888
Q ss_pred ecccCCceeEEecCCCCcccEEEeccCCCce
Q 005181 583 TGTYDYELFHFEAGWFPKLQKLLLWDFVAVK 613 (710)
Q Consensus 583 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 613 (710)
++|.+... ..+..+++|+.|+|++|.+..
T Consensus 183 s~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 183 SKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 88877664 246777888888888877654
No 100
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=1.2e-19 Score=203.65 Aligned_cols=321 Identities=13% Similarity=0.017 Sum_probs=185.8
Q ss_pred CCceeEEEEEccCcccc-cc-cCC-CCc-eeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCcc-----CcccccC
Q 005181 379 CSKTRRIAIQRSIDDGA-LE-SIK-DSK-VRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDY-----LPEGVGN 449 (710)
Q Consensus 379 ~~~~r~l~l~~~~~~~~-~~-~~~-~~~-l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-----l~~~~~~ 449 (710)
+++++++.+..+..... +. ... +++ |+.|.+.+|.......+.....++++|++|+|++|.+.. ++..+..
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 46688888877754321 11 111 334 888888877654444455566678888888888887642 2334456
Q ss_pred cccceEEEecccccc-----ccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCcc--CCc-----
Q 005181 450 LFNLHYLSVKNTEVK-----IIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSI--MPA----- 517 (710)
Q Consensus 450 l~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~--~~~----- 517 (710)
+++|+.|++++|.++ .++..+.++++|++|++++|.+..+|..+.++++|++|.+++++...... ...
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 788888888888775 34444567888888888888877787778888888888886422110000 000
Q ss_pred -----------hhhhhccCCCCcCccEEEEeecC-CC--CCccccCCCCccEEEEEeeccCCccccccccccccceEEee
Q 005181 518 -----------EAVAKSLSSPPQYLQRLYLMGNM-KK--LPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLT 583 (710)
Q Consensus 518 -----------~~~~~~l~~~~~~L~~L~L~~n~-~~--ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 583 (710)
...+..+...+++|++|+|++|. .. ++..+..+++|+.|+++++......+..+..+++|++|+++
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 00111222333466666666652 11 11224566666666666222112222333456677777777
Q ss_pred c-----------ccCCce-eEEecCCCCcccEEEeccCCCceeeeecCCc-CCCccEEEEc----cCCCCCC-----Ccc
Q 005181 584 G-----------TYDYEL-FHFEAGWFPKLQKLLLWDFVAVKSVIIEKGA-MPDIRELEIG----PCPLLME-----IPI 641 (710)
Q Consensus 584 ~-----------n~~~~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~l~----~n~~~~~-----~p~ 641 (710)
+ +.++.. .......+++|++|+++.|.+.+..+..+.. +++|+.|+++ .|.+.+. ++.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 3 333321 1111345778888888777766554444443 8889999997 3444431 333
Q ss_pred ccccCCCCcEEEEecCcHH--------HHH---hc--ccCCcCccccCcCeEEEEEEeCCeeeEeehhhhc
Q 005181 642 GIEHLRNLKLLRFDCMVKQ--------VYY---MT--KDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILS 699 (710)
Q Consensus 642 ~~~~l~~L~~L~l~~~~~~--------~~~---~~--~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~ 699 (710)
.+.++++|+.|++++|... +.. .+ .++++|++.......+...++.|+.|++++|.++
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 3677899999999765421 111 11 1255655544222222233478999999999876
No 101
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=2.3e-19 Score=201.31 Aligned_cols=301 Identities=14% Similarity=0.058 Sum_probs=164.0
Q ss_pred CCceeEEEEEccCcccc------cccCCCCceeEEEeecCCCC--CcchhhhhhcccccccEEecCCCCCccCcccccCc
Q 005181 379 CSKTRRIAIQRSIDDGA------LESIKDSKVRSVFLFNVDKL--PDSFMNASIANFKLMKVLDLEDAPVDYLPEGVGNL 450 (710)
Q Consensus 379 ~~~~r~l~l~~~~~~~~------~~~~~~~~l~~l~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l 450 (710)
+++++++.+..+..... .....+++|+.|.+.++... ....++..+.++++|++|++++|.+..+|..+.++
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 34566666555543211 01223556666666554432 22344455556666666666666655555445555
Q ss_pred ccceEEEecc---------------------------ccccccCcchhcccCCCEEEcCCCcccc--ccccccccccCcE
Q 005181 451 FNLHYLSVKN---------------------------TEVKIIPKSIRNLLSLEILDLKNTLVSE--LPVEIRNLKKLRY 501 (710)
Q Consensus 451 ~~L~~L~l~~---------------------------n~i~~lp~~~~~l~~L~~L~l~~n~~~~--~~~~~~~l~~L~~ 501 (710)
++|+.|++++ +....+|..+..+++|++|++++|.++. ++..+..+++|++
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 5555555543 2222333334444455555555444321 1112344555555
Q ss_pred EEccccccccCccCCchhhhhccCCCCcCccEEEEee----------c--CCC--CCccccCCCCccEEEEEeeccCCcc
Q 005181 502 LMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMG----------N--MKK--LPDWIFKLENLIRLGLELSGLAEEP 567 (710)
Q Consensus 502 L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~----------n--~~~--ip~~~~~l~~L~~L~L~~n~l~~~~ 567 (710)
|+++ ++ ++... +..+...+++|++|+|++ + ++. ++..+..+++|+.|+++.|.+++..
T Consensus 323 L~L~-~~-~~~~~------l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 323 LETR-NV-IGDRG------LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp EEEE-GG-GHHHH------HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred Eecc-Cc-cCHHH------HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 5554 11 11111 112222334678888873 2 211 2222355788888888777777666
Q ss_pred cccccc-ccccceEEee----cccCCce-----eEEecCCCCcccEEEeccCC--CceeeeecC-CcCCCccEEEEccCC
Q 005181 568 IRVLQA-SPNLLELRLT----GTYDYEL-----FHFEAGWFPKLQKLLLWDFV--AVKSVIIEK-GAMPDIRELEIGPCP 634 (710)
Q Consensus 568 ~~~l~~-l~~L~~L~L~----~n~~~~~-----~~~~~~~~~~L~~L~L~~n~--~~~~~~~~~-~~l~~L~~L~l~~n~ 634 (710)
+..++. +++|+.|+++ .|.+++. ++..+.++++|+.|++++|. +....+..+ ..+++|+.|++++|.
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 666654 7888888886 3444432 12224567888888887543 333222222 347889999999888
Q ss_pred CCC-CCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccC
Q 005181 635 LLM-EIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSL 701 (710)
Q Consensus 635 ~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~ 701 (710)
+.+ .++..+.++++|+.|++++|+ +.......+...++.|+.|++++|.++..
T Consensus 475 l~~~~~~~~~~~~~~L~~L~l~~n~--------------l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 475 ESDEGLMEFSRGCPNLQKLEMRGCC--------------FSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp SSHHHHHHHHTCCTTCCEEEEESCC--------------CBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCHHHHHHHHhcCcccCeeeccCCC--------------CcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 764 345566788999999998664 22221122222347899999999998754
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=7.2e-18 Score=170.16 Aligned_cols=190 Identities=20% Similarity=0.180 Sum_probs=151.2
Q ss_pred ccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEcccc
Q 005181 428 KLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRY 507 (710)
Q Consensus 428 ~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~ 507 (710)
..+..+.+..+.+..+. .+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.+++ +.++++|++|++++
T Consensus 24 ~~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~- 99 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE- 99 (291)
T ss_dssp HHHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-
T ss_pred HHHHHHHhcCCCccccc-chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC-
Confidence 33444567777776542 3457899999999999999886 58899999999999999999987 99999999999994
Q ss_pred ccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeeccc
Q 005181 508 NYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTY 586 (710)
Q Consensus 508 n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 586 (710)
|.+++.. .+ ..+++|+.|+|++| +..++ .+..+++|+.|++++|.++.. ..+..+++|+.|++++|.
T Consensus 100 n~l~~~~--------~l-~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 100 NKVKDLS--------SL-KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp SCCCCGG--------GG-TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred CcCCCCh--------hh-ccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCc
Confidence 5555422 22 33458999999998 66664 578889999999999998775 578888999999999998
Q ss_pred CCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCC
Q 005181 587 DYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLM 637 (710)
Q Consensus 587 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 637 (710)
+....+ +..+++|+.|++++|.+... + .+..+++|+.|++++|++..
T Consensus 168 l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 168 ISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 877654 78889999999999887653 3 37788899999999988754
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=1e-17 Score=183.03 Aligned_cols=173 Identities=16% Similarity=0.121 Sum_probs=142.8
Q ss_pred cceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCc
Q 005181 452 NLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYL 531 (710)
Q Consensus 452 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L 531 (710)
+|+.|++++|.++.+|..+ .++|++|+|++|.++.+| ..+++|++|+++ +|.+++.. . ...+|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls-~N~l~~ip--------~---l~~~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDAC-DNRLSTLP--------E---LPASL 122 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECC-SSCCSCCC--------C---CCTTC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEcc-CCCCCCcc--------h---hhcCC
Confidence 8999999999999999876 389999999999999999 568999999999 46666522 1 12289
Q ss_pred cEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCC
Q 005181 532 QRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFV 610 (710)
Q Consensus 532 ~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 610 (710)
+.|+|++| +..+|. .+++|+.|+|++|.+++.+ . .+++|+.|+|++|.+..+.. +. ++|+.|+|++|.
T Consensus 123 ~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLP-E---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNL 191 (571)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSC
T ss_pred CEEECCCCcCCCCCC---cCccccEEeCCCCccCcCC-C---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCC
Confidence 99999999 777887 6899999999999998743 3 57899999999999888543 44 899999999998
Q ss_pred CceeeeecCCcCCCc-------cEEEEccCCCCCCCccccccCCCCcEEEEecC
Q 005181 611 AVKSVIIEKGAMPDI-------RELEIGPCPLLMEIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 611 ~~~~~~~~~~~l~~L-------~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 657 (710)
+. .+|. +.. +| +.|+|++|.+. .+|..+..+++|+.|++++|
T Consensus 192 L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 192 LE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp CS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred CC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence 76 4555 443 67 99999999987 68988888999999999965
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=3.2e-19 Score=186.57 Aligned_cols=259 Identities=14% Similarity=0.052 Sum_probs=179.7
Q ss_pred EEecCCCCCccC-cccccCcccceEEEeccccccccC-----cchhccc-CCCEEEcCCCccccc-ccccccc-----cc
Q 005181 432 VLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTEVKIIP-----KSIRNLL-SLEILDLKNTLVSEL-PVEIRNL-----KK 498 (710)
Q Consensus 432 ~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~i~~lp-----~~~~~l~-~L~~L~l~~n~~~~~-~~~~~~l-----~~ 498 (710)
.+++++|.++.. |..+...++|+.|++++|.++..+ ..+..++ +|++|+|++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 467889998854 665666667999999999999666 5578888 999999999998776 3445554 99
Q ss_pred CcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCc-c----ccC-CCCccEEEEEeeccCCccc---
Q 005181 499 LRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPD-W----IFK-LENLIRLGLELSGLAEEPI--- 568 (710)
Q Consensus 499 L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~-~----~~~-l~~L~~L~L~~n~l~~~~~--- 568 (710)
|++|++++ |.+++..+.. ....+...+++|+.|+|++| ++..+. . +.. .++|++|+|++|.++...+
T Consensus 82 L~~L~Ls~-n~l~~~~~~~--l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 82 VTSLNLSG-NFLSYKSSDE--LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CCEEECCS-SCGGGSCHHH--HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred ccEEECcC-CcCChHHHHH--HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 99999995 5565444321 12223333369999999999 555443 2 334 3699999999999986443
Q ss_pred -ccccccc-ccceEEeecccCCceeEEe----cCCC-CcccEEEeccCCCcee----eeecCCc-CCCccEEEEccCCCC
Q 005181 569 -RVLQASP-NLLELRLTGTYDYELFHFE----AGWF-PKLQKLLLWDFVAVKS----VIIEKGA-MPDIRELEIGPCPLL 636 (710)
Q Consensus 569 -~~l~~l~-~L~~L~L~~n~~~~~~~~~----~~~~-~~L~~L~L~~n~~~~~----~~~~~~~-l~~L~~L~l~~n~~~ 636 (710)
..+..++ +|+.|+|++|.+....+.. +..+ ++|+.|+|++|.+... ++..+.. .++|+.|+|++|.+.
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 3445555 9999999999987654432 3345 5999999999987652 3444444 459999999999987
Q ss_pred CCCc----cccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhccC
Q 005181 637 MEIP----IGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSSL 701 (710)
Q Consensus 637 ~~~p----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~~ 701 (710)
...+ ..+..+++|+.|++++|...- +. . .....++..+. .++.|+.+++++|.+...
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~---i~---~-~~~~~l~~~~~-~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKN---MS---K-EQCKALGAAFP-NIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTT---CC---H-HHHHHHHTTST-TCCEEEEECTTSCBCCGG
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccc---cC---H-HHHHHHHHHhc-cCCceEEEecCCCcCCCc
Confidence 6433 346788999999999775100 00 0 00111111111 226688999999998744
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.2e-17 Score=165.66 Aligned_cols=170 Identities=21% Similarity=0.214 Sum_probs=133.8
Q ss_pred ccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEcc
Q 005181 426 NFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVY 505 (710)
Q Consensus 426 ~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~ 505 (710)
.+.++..++++++.++.++ .+..+++|+.|++++|.++.+| .+..+++|++|++++|.+..+++ +.++++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 4566777888888888777 5778889999999999988887 78888999999999998888887 8889999999998
Q ss_pred ccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeec
Q 005181 506 RYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTG 584 (710)
Q Consensus 506 ~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 584 (710)
+ |.+++.. .+.. ++|+.|+|++| +..++ .+..+++|+.|++++|.+++. ..++.+++|+.|++++
T Consensus 94 ~-N~l~~l~--------~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 94 R-NRLKNLN--------GIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHG 159 (263)
T ss_dssp S-SCCSCCT--------TCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTT
T ss_pred C-CccCCcC--------cccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCC
Confidence 4 5555432 1122 57888888888 56554 478888888888888888775 3678888888888888
Q ss_pred ccCCceeEEecCCCCcccEEEeccCCCcee
Q 005181 585 TYDYELFHFEAGWFPKLQKLLLWDFVAVKS 614 (710)
Q Consensus 585 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 614 (710)
|.+... ..+..+++|+.|++++|.+...
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 888775 4567788888888888876544
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2.9e-17 Score=181.67 Aligned_cols=192 Identities=20% Similarity=0.192 Sum_probs=159.4
Q ss_pred cccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccc
Q 005181 427 FKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYR 506 (710)
Q Consensus 427 ~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~ 506 (710)
+..+..+.++.+.+..+. .+..+++|+.|++++|.+..+| .+..+++|+.|+|++|.+..+++ +..+++|+.|+|++
T Consensus 20 l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 344556678888777654 2568899999999999999887 68999999999999999999987 99999999999995
Q ss_pred cccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecc
Q 005181 507 YNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGT 585 (710)
Q Consensus 507 ~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 585 (710)
|.+++.. .+ ..+++|+.|+|++| +..++ .+..+++|+.|+|++|.++.. ..+..+++|+.|+|++|
T Consensus 97 -N~l~~l~--------~l-~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 97 -NKIKDLS--------SL-KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp -SCCCCCT--------TS-TTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred -CCCCCCh--------hh-ccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence 5555432 22 33458999999999 66664 588899999999999999875 67889999999999999
Q ss_pred cCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCC
Q 005181 586 YDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLME 638 (710)
Q Consensus 586 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 638 (710)
.+....+ +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++...
T Consensus 164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 9988766 88999999999999987664 3578899999999999987653
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=1.8e-18 Score=190.22 Aligned_cols=199 Identities=16% Similarity=0.086 Sum_probs=134.5
Q ss_pred cCcccceEEEeccccccccCcchhcccCCCEEEcCCCc--------------cccccccccccccCcEEE-ccccccccC
Q 005181 448 GNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTL--------------VSELPVEIRNLKKLRYLM-VYRYNYTTG 512 (710)
Q Consensus 448 ~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~--------------~~~~~~~~~~l~~L~~L~-l~~~n~~~~ 512 (710)
..+++|+.|+|++|.++.+|+.++++++|+.|++++|. .+..|..+.++++|+.|+ ++ +|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~-~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh-hcccch
Confidence 45677777777777777777777777777777776553 344556677888888887 44 333221
Q ss_pred ccCCch--hhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCc
Q 005181 513 SIMPAE--AVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYE 589 (710)
Q Consensus 513 ~~~~~~--~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 589 (710)
...-.. ..+..+. +..|+.|+|++| +..+|. +..+++|+.|+|++|.++. .|..|+.+++|+.|+|++|.+.+
T Consensus 425 L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 LRSKFLLENSVLKME--YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHH--HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhcccccccC--ccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC
Confidence 100000 0001110 125778888888 677776 7888888888888888874 56678888888888888888776
Q ss_pred eeEEecCCCCcccEEEeccCCCceee-eecCCcCCCccEEEEccCCCCCCCcc---ccccCCCCcEEE
Q 005181 590 LFHFEAGWFPKLQKLLLWDFVAVKSV-IIEKGAMPDIRELEIGPCPLLMEIPI---GIEHLRNLKLLR 653 (710)
Q Consensus 590 ~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~p~---~~~~l~~L~~L~ 653 (710)
. | .++.+++|+.|+|++|.+.+.. |..++.+++|+.|+|++|++.+..|. .+..+++|+.|+
T Consensus 501 l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 V-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp C-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred C-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 4 4 6778888888888888776665 77778888888888888887654332 123477777775
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=3.5e-16 Score=148.12 Aligned_cols=108 Identities=20% Similarity=0.196 Sum_probs=62.2
Q ss_pred ccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCcc
Q 005181 547 IFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIR 626 (710)
Q Consensus 547 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 626 (710)
+..+++|+.|++++|.++...+..++.+++|+.|++++|.+....+..+..+++|+.|++++|...+.++ .+..+++|+
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK 162 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence 3445555555555555554445555555556666665555554444445556666666666665333333 456666777
Q ss_pred EEEEccCCCCCCCccccccCCCCcEEEEecC
Q 005181 627 ELEIGPCPLLMEIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 627 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 657 (710)
.|++++|.+.+ ++ .+..+++|+.|++++|
T Consensus 163 ~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 163 SLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 77777776553 34 5666777777777654
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=3.3e-16 Score=148.26 Aligned_cols=153 Identities=15% Similarity=0.137 Sum_probs=95.9
Q ss_pred cCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCC
Q 005181 448 GNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSP 527 (710)
Q Consensus 448 ~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~ 527 (710)
..+++|+.|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++ |.+++..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~-n~l~~~~------------- 104 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMG-KDVTSDK------------- 104 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEEC-TTCBGGG-------------
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeEC-CccCccc-------------
Confidence 45666666666666666665 5666666666666666555443 455666666666663 3333211
Q ss_pred CcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeeccc-CCceeEEecCCCCcccEEEe
Q 005181 528 PQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTY-DYELFHFEAGWFPKLQKLLL 606 (710)
Q Consensus 528 ~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~L 606 (710)
|..+..+++|+.|++++|.++...+..++.+++|+.|++++|. +... + .+..+++|+.|++
T Consensus 105 ----------------~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 105 ----------------IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNI 166 (197)
T ss_dssp ----------------SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEEC
T ss_pred ----------------ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEEC
Confidence 3345566777777777777766566667777777777777776 4443 2 4666777777777
Q ss_pred ccCCCceeeeecCCcCCCccEEEEccCCCC
Q 005181 607 WDFVAVKSVIIEKGAMPDIRELEIGPCPLL 636 (710)
Q Consensus 607 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 636 (710)
++|.+.. ++ .+..+++|+.|++++|++.
T Consensus 167 ~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 167 QFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 7776654 22 5667778888888877754
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=5e-16 Score=149.67 Aligned_cols=147 Identities=22% Similarity=0.245 Sum_probs=95.8
Q ss_pred cEEecCCCCCccCcccccCcccceEEEeccccccccCc-chhcccCCCEEEcCCCccccc-cccccccccCcEEEccccc
Q 005181 431 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPK-SIRNLLSLEILDLKNTLVSEL-PVEIRNLKKLRYLMVYRYN 508 (710)
Q Consensus 431 ~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~n 508 (710)
+.++++++.++.+|..+. ++|+.|++++|.|+.++. .|..+++|++|+|++|.+..+ |..|.++++|++|+|++ |
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-N 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-S
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-C
Confidence 567888888888877654 678888888888886665 477888888888888877766 55677777777777773 4
Q ss_pred cccCccCCchhhhhccCCCCcCccEEEEeecCCCCCc-cccCCCCccEEEEEeeccCCccccccccccccceEEeecccC
Q 005181 509 YTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPD-WIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYD 587 (710)
Q Consensus 509 ~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 587 (710)
.++. +|. .|..+++|+.|+|++|.++...+..|..+++|+.|+|++|.+
T Consensus 91 ~l~~------------------------------l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 91 KITE------------------------------LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp CCCC------------------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCc------------------------------cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 4332 222 235556666666666666655555566666666666666655
Q ss_pred CceeEEecCCCCcccEEEeccCC
Q 005181 588 YELFHFEAGWFPKLQKLLLWDFV 610 (710)
Q Consensus 588 ~~~~~~~~~~~~~L~~L~L~~n~ 610 (710)
....+..+..+++|+.|+|++|+
T Consensus 141 ~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 141 QTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEECHHHHhCCCCCCEEEeCCCC
Confidence 55444444555555555555554
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=150.90 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=74.3
Q ss_pred cEEecCCCCCccCcccccCcccceEEEeccccccccCc--chhcccCCCEEEcCCCccccccc-cccccccCcEEEcccc
Q 005181 431 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPK--SIRNLLSLEILDLKNTLVSELPV-EIRNLKKLRYLMVYRY 507 (710)
Q Consensus 431 ~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~ 507 (710)
+.+++++|.++.+|..+. ..++.|++++|.++.++. .|..+++|++|+|++|.++.+++ .|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~- 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS- 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC-
Confidence 466777777666665442 345666666666664422 25566666666666666555544 344555555555542
Q ss_pred ccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccC
Q 005181 508 NYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYD 587 (710)
Q Consensus 508 n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 587 (710)
|.+++.. +..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|.+
T Consensus 91 N~l~~~~-----------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 91 NRLENVQ-----------------------------HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp SCCCCCC-----------------------------GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred CccCccC-----------------------------HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 2222111 12344455555555555555544444444444555555444444
Q ss_pred CceeEEecCCCCcccEEEeccCC
Q 005181 588 YELFHFEAGWFPKLQKLLLWDFV 610 (710)
Q Consensus 588 ~~~~~~~~~~~~~L~~L~L~~n~ 610 (710)
.+..|..+..+++|+.|+|++|+
T Consensus 142 ~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 142 TTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEECHHHhcCCCCCCEEEecCcC
Confidence 44333334444444444444443
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=3.9e-16 Score=149.35 Aligned_cols=175 Identities=18% Similarity=0.115 Sum_probs=120.4
Q ss_pred eEEEeccccccccCcchhcccCCCEEEcCCCcccccccc-ccccccCcEEEccccccccCccCCchhhhhccCCCCcCcc
Q 005181 454 HYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVE-IRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQ 532 (710)
Q Consensus 454 ~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~ 532 (710)
+.++.+++.++.+|..+ .++|++|++++|.+..++.. +..+++|++|++++ |.++
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~--------------------- 65 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQ--------------------- 65 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCC---------------------
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCC-CccC---------------------
Confidence 45666667777666554 35677777777777666553 45666666666663 3322
Q ss_pred EEEEeecCCCCC-ccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCC
Q 005181 533 RLYLMGNMKKLP-DWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVA 611 (710)
Q Consensus 533 ~L~L~~n~~~ip-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~ 611 (710)
.+| ..|..+++|++|++++|.++...+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 66 ---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 66 ---------SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp ---------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ---------ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 222 2456788888888888888877777778888888888888887766555567788888888888877
Q ss_pred ceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEE
Q 005181 612 VKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLV 682 (710)
Q Consensus 612 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~ 682 (710)
.+..+..+..+++|+.|++++|++.+ .+++|+.|+++ .|++.+.+|..+.
T Consensus 137 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~--------------~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 137 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW--------------INKHSGVVRNSAG 186 (208)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHH--------------HHHCTTTBBCTTS
T ss_pred ceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHH--------------HHhCCceeeccCc
Confidence 66555557778888888888886543 34566666665 4567777776543
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=6.1e-16 Score=149.01 Aligned_cols=151 Identities=15% Similarity=0.076 Sum_probs=84.7
Q ss_pred eEEEeccccccccCcchhcccCCCEEEcCCCccccccc--cccccccCcEEEccccccccCccCCchhhhhccCCCCcCc
Q 005181 454 HYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPV--EIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYL 531 (710)
Q Consensus 454 ~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L 531 (710)
+.+++++|.++.+|..+. ..+++|+|++|.+..+++ .|..+++|++|++++ |.+++..
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~----------------- 73 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIE----------------- 73 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEEC-----------------
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEEC-----------------
Confidence 356666666666665442 345666666666655532 245555555555552 2222111
Q ss_pred cEEEEeecCCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCC
Q 005181 532 QRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVA 611 (710)
Q Consensus 532 ~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~ 611 (710)
+..|..+++|+.|+|++|.++...+..|..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+
T Consensus 74 ------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 74 ------------EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp ------------TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred ------------HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 22455666666666666666665555566666666666666666555455555555666666666555
Q ss_pred ceeeeecCCcCCCccEEEEccCCCC
Q 005181 612 VKSVIIEKGAMPDIRELEIGPCPLL 636 (710)
Q Consensus 612 ~~~~~~~~~~l~~L~~L~l~~n~~~ 636 (710)
.+..|..+..+++|+.|++++|++.
T Consensus 142 ~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 142 TTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CEECHHHhcCCCCCCEEEecCcCCc
Confidence 5544555555555555555555544
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=7.1e-16 Score=148.58 Aligned_cols=150 Identities=18% Similarity=0.161 Sum_probs=87.5
Q ss_pred eEEEeccccccccCcchhcccCCCEEEcCCCccccccc-cccccccCcEEEccccccccCccCCchhhhhccCCCCcCcc
Q 005181 454 HYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPV-EIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQ 532 (710)
Q Consensus 454 ~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~ 532 (710)
+.++.+++.++.+|..+. ++|+.|++++|.+..+++ .|..+++|++|+|++ |.+++.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~-N~i~~~------------------- 71 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISEL------------------- 71 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS-SCCCEE-------------------
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC-CcCCCc-------------------
Confidence 456666666666665543 566666766666666654 455566666666652 332211
Q ss_pred EEEEeecCCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCc
Q 005181 533 RLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAV 612 (710)
Q Consensus 533 ~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 612 (710)
.|..|.++++|+.|+|++|.++..++..|..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+.
T Consensus 72 ----------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 72 ----------APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp ----------CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ----------CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 1334566666666666666666655555666666666666666665555555555566666666666555
Q ss_pred eeeeecCCcCCCccEEEEccCCC
Q 005181 613 KSVIIEKGAMPDIRELEIGPCPL 635 (710)
Q Consensus 613 ~~~~~~~~~l~~L~~L~l~~n~~ 635 (710)
+..+..+..+++|+.|++++|++
T Consensus 142 ~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 142 TIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECHHHHhCCCCCCEEEeCCCCc
Confidence 44444455555555565555554
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=2.9e-16 Score=163.88 Aligned_cols=174 Identities=17% Similarity=0.099 Sum_probs=115.6
Q ss_pred cEEecCCCCCccCcccccCcccceEEEeccccccccCcc-hh-cccCCCEEEcCCCccccccc-cccccccCcEEEcccc
Q 005181 431 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKS-IR-NLLSLEILDLKNTLVSELPV-EIRNLKKLRYLMVYRY 507 (710)
Q Consensus 431 ~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~-~~-~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~ 507 (710)
++++++++.++.+|..+. +.++.|+|++|.|+.++.. +. ++++|++|+|++|.+..+++ .|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~- 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS- 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC-
Confidence 578888888888886553 4578888888888866655 55 78888888888888877764 477777777777774
Q ss_pred ccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccC
Q 005181 508 NYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYD 587 (710)
Q Consensus 508 n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 587 (710)
|.++... +..|.++++|+.|+|++|.++...+..|..+++|+.|+|++|.+
T Consensus 98 N~l~~~~-----------------------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 98 NHLHTLD-----------------------------EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp SCCCEEC-----------------------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCcCC-----------------------------HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence 3333111 23456778888888888888777777777777888888877777
Q ss_pred CceeEEec---CCCCcccEEEeccCCCceeeeecCCcCCC--ccEEEEccCCCC
Q 005181 588 YELFHFEA---GWFPKLQKLLLWDFVAVKSVIIEKGAMPD--IRELEIGPCPLL 636 (710)
Q Consensus 588 ~~~~~~~~---~~~~~L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~l~~n~~~ 636 (710)
....+..+ ..+++|+.|+|++|.+....+..+..++. |+.|+|++|++.
T Consensus 149 ~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 66443333 34566666666666655433334444444 255666666553
No 116
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=8.6e-15 Score=152.37 Aligned_cols=296 Identities=11% Similarity=0.095 Sum_probs=173.0
Q ss_pred CCCceeecccchhhc----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC------CHHHHHHHH
Q 005181 20 PHAGFSGKEDNNQLI----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY------KKNDLLRTI 89 (710)
Q Consensus 20 ~~~~~vGre~~~~~i----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~------~~~~~~~~i 89 (710)
.+..|+||+.+++.+ ..+ +++.|+|++|+|||||++++++.. .++|+++.... +...+...+
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~-~~v~i~G~~G~GKT~Ll~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY-PLTLLLGIRRVGKSSLLRAFLNER-------PGILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHHS-------SEEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC-CeEEEECCCcCCHHHHHHHHHHHc-------CcEEEEeecccccccCCCHHHHHHHH
Confidence 467899999999988 223 899999999999999999998762 27788765432 445555555
Q ss_pred HHHHhhh-------------cCCCCCccccchhHHHHHHHHHHHhcC-CceEEEEecCCCcch--------HHHHHHhcC
Q 005181 90 LKEFHRV-------------ANQPAPVEIHDMEEMELITTLRDHLKD-KSYMVVFDDVWKIDF--------WGDVEYALL 147 (710)
Q Consensus 90 ~~~l~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~LlvlDdv~~~~~--------~~~~~~~l~ 147 (710)
...+... .+... .....+..++.+.+.+..+. ++++||+||++..+. +......+.
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTL--EPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTS--CGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhceeEEEecceee--ccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 5543220 00000 01112445566666665543 389999999987542 222222222
Q ss_pred CCCCCcEEEEEcCchhhhhhc----c----CC-CCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHH
Q 005181 148 DSKKCGRIIVTTRHMNVAKYC----K----SS-SSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAK 218 (710)
Q Consensus 148 ~~~~~~~ilvTtR~~~~~~~~----~----~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 218 (710)
+...+.++|+|++...+.... . .. .....+.+.||+.+|+.+++....... +.. ...+.+.++++.
T Consensus 160 ~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~--~~~---~~~~~~~~i~~~ 234 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREV--NLD---VPENEIEEAVEL 234 (350)
T ss_dssp HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTT--TCC---CCHHHHHHHHHH
T ss_pred HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHc--CCC---CCHHHHHHHHHH
Confidence 222466889998875432211 1 01 112478999999999999998764221 111 123578899999
Q ss_pred hCCCchHHHHHHhhhcCCCCCHHHHHHHHHhhccccCCCcchhhHHHHHHhcccCC---chhHHHHHhhhcCCCCCcccc
Q 005181 219 CGGLPLAIVAVGGLLSTKNMVVSEWKKLFDRMGSILGSDPHLKDCNRVLSEGYHDL---PHHLKSCLLYFGLFPESCKVN 295 (710)
Q Consensus 219 ~~g~Plal~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L---~~~~~~~~l~la~f~~~~~~~ 295 (710)
++|+|+++..++..+... .+...+.. ... +.+...+...+..+ ++..+.++..+|. .. ++
T Consensus 235 tgG~P~~l~~~~~~~~~~-~~~~~~~~---~~~---------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~--~~ 297 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRN-GDFGRAMK---RTL---------EVAKGLIMGELEELRRRSPRYVDILRAIAL--GY--NR 297 (350)
T ss_dssp HTTCHHHHHHHHHHHHHH-CCHHHHHH---HHH---------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TC--CS
T ss_pred hCCCHHHHHHHHHHHhcc-ccHhHHHH---HHH---------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CC--CC
Confidence 999999999887654221 11222211 110 11111111112222 5778888888887 22 34
Q ss_pred hhHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeeecCCCCCEeEEEEcHhHHHHHH
Q 005181 296 CARLIRLWIAEGFVPYCKRPTSEQVAEECLNELIDRSLVQVSERDISGRARICQVHDLMHEIVV 359 (710)
Q Consensus 296 ~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~~h~li~~~~~ 359 (710)
...+....... .. ......+..+++.|++.+++.... + .+.-.|++++++.+
T Consensus 298 ~~~l~~~~~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~~----~--~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVK-GT-----KIPEPRLYALLENLKKMNWIVEED----N--TYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHT-TC-----CCCHHHHHHHHHHHHHTTSEEEET----T--EEEESSHHHHHHHT
T ss_pred HHHHHHHHHHH-hC-----CCCHHHHHHHHHHHHhCCCEEecC----C--EEEEecHHHHHHHc
Confidence 44444332111 00 112445778999999999997651 1 22334778888753
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=3.7e-18 Score=191.51 Aligned_cols=298 Identities=16% Similarity=0.091 Sum_probs=166.4
Q ss_pred CCceeEEEEEccCccc-----ccc-cCCCCceeEEEeecCC-CCCcchhhhhhcccccccEEecCCC-CCccCcccccCc
Q 005181 379 CSKTRRIAIQRSIDDG-----ALE-SIKDSKVRSVFLFNVD-KLPDSFMNASIANFKLMKVLDLEDA-PVDYLPEGVGNL 450 (710)
Q Consensus 379 ~~~~r~l~l~~~~~~~-----~~~-~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~l~~~~~~l 450 (710)
+++++++.+..+.+.. ... ...+++|+.|.+..+. ......+...+.++++|++|++++| .+..++..+..+
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 4556666665554221 111 1245667777666654 2223334444455677777777766 233444445555
Q ss_pred ccceEEEeccc-------------------------------cccccCcchhcccCCCEEEcCCCcccc--ccccccccc
Q 005181 451 FNLHYLSVKNT-------------------------------EVKIIPKSIRNLLSLEILDLKNTLVSE--LPVEIRNLK 497 (710)
Q Consensus 451 ~~L~~L~l~~n-------------------------------~i~~lp~~~~~l~~L~~L~l~~n~~~~--~~~~~~~l~ 497 (710)
++|+.|+++.+ ....++..+..+++|++|++++|.++. ++..+.+++
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence 56666653322 111233334456677777777665432 222345667
Q ss_pred cCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-------CCCCC-----ccccCCCCccEEEEEeeccCC
Q 005181 498 KLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-------MKKLP-----DWIFKLENLIRLGLELSGLAE 565 (710)
Q Consensus 498 ~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-------~~~ip-----~~~~~l~~L~~L~L~~n~l~~ 565 (710)
+|++|++++| ++... +..+...+++|+.|++.++ ...+. .....+++|+.|.++.|.++.
T Consensus 315 ~L~~L~l~~~--~~~~~------l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 315 KLQRLWVLDY--IEDAG------LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp TCCEEEEEGG--GHHHH------HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred CcCEEeCcCc--cCHHH------HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence 7777777643 22111 1122222457888877431 11111 112347888888777777776
Q ss_pred ccccccc-cccccceEEee--c----ccCCce-----eEEecCCCCcccEEEeccCCCceeeeecCC-cCCCccEEEEcc
Q 005181 566 EPIRVLQ-ASPNLLELRLT--G----TYDYEL-----FHFEAGWFPKLQKLLLWDFVAVKSVIIEKG-AMPDIRELEIGP 632 (710)
Q Consensus 566 ~~~~~l~-~l~~L~~L~L~--~----n~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~~ 632 (710)
..+..+. .+++|+.|+++ + +.++.. .+..+..+++|+.|+|++ .+....+..+. .+++|+.|++++
T Consensus 387 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~ 465 (594)
T 2p1m_B 387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF 465 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC
Confidence 5555554 57888888888 3 334321 111245678899999876 44443333333 378899999999
Q ss_pred CCCCCCCcccc-ccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeCCeeeEeehhhhc
Q 005181 633 CPLLMEIPIGI-EHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILS 699 (710)
Q Consensus 633 n~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~ 699 (710)
|.+.+..+..+ .++++|+.|++++|+. ....+..+...++.|+.|++++|.++
T Consensus 466 ~~i~~~~~~~l~~~~~~L~~L~L~~n~~--------------~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPF--------------GDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CCSSHHHHHHHHHHCTTCCEEEEESCSC--------------CHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CCCcHHHHHHHHhcCCCcCEEECcCCCC--------------cHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 98765433334 6789999999997643 11111111122378999999999885
No 118
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=1.4e-17 Score=186.84 Aligned_cols=322 Identities=17% Similarity=0.142 Sum_probs=181.9
Q ss_pred cCCceeEEEEEccCcccc-cccC--CCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCcc-----CcccccC
Q 005181 378 RCSKTRRIAIQRSIDDGA-LESI--KDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDY-----LPEGVGN 449 (710)
Q Consensus 378 ~~~~~r~l~l~~~~~~~~-~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-----l~~~~~~ 449 (710)
.+++++++.+..+..... +... .+++|+.|.+.+|..+....++..+.++++|++|++++|.++. ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 346788898888765432 1111 4789999999988655555566777789999999999998653 3333447
Q ss_pred cccceEEEecccc--cc--ccCcchhcccCCCEEEcCCC-ccccccccccccccCcEEEcccccc---------------
Q 005181 450 LFNLHYLSVKNTE--VK--IIPKSIRNLLSLEILDLKNT-LVSELPVEIRNLKKLRYLMVYRYNY--------------- 509 (710)
Q Consensus 450 l~~L~~L~l~~n~--i~--~lp~~~~~l~~L~~L~l~~n-~~~~~~~~~~~l~~L~~L~l~~~n~--------------- 509 (710)
+++|+.|++++|. ++ .++..+..+++|++|++++| .++.+|..+.++++|++|.++.+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 7899999999886 32 23333456799999999977 5666777777888888887653211
Q ss_pred ----cc---CccCCchhhhhccCCCCcCccEEEEeecC-CC--CCccccCCCCccEEEEEeeccCCccc-cccccccccc
Q 005181 510 ----TT---GSIMPAEAVAKSLSSPPQYLQRLYLMGNM-KK--LPDWIFKLENLIRLGLELSGLAEEPI-RVLQASPNLL 578 (710)
Q Consensus 510 ----~~---~~~~~~~~~~~~l~~~~~~L~~L~L~~n~-~~--ip~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~ 578 (710)
+. +........+..+...+++|+.|+|++|. .. ++..+..+++|+.|++++| ++.... .....+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 00 00000000111111233578888887772 21 1223457788888888777 332222 2223467777
Q ss_pred eEEeec---------ccCCceeEEe-cCCCCcccEEEeccCCCceeeeecCC-cCCCccEEEEc-----cCCCCCCCc--
Q 005181 579 ELRLTG---------TYDYELFHFE-AGWFPKLQKLLLWDFVAVKSVIIEKG-AMPDIRELEIG-----PCPLLMEIP-- 640 (710)
Q Consensus 579 ~L~L~~---------n~~~~~~~~~-~~~~~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~-----~n~~~~~~p-- 640 (710)
.|++++ +.++...... ...+++|+.|.+..|.+.......+. .+++|+.|+++ +|...+..|
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 777743 2222211111 12356777776666655443322222 46677777777 222222222
Q ss_pred ----cccccCCCCcEEEEecCcH-----HHHH---hc--ccCCcCccccCcCeEEEEEEeCCeeeEeehhhhcc
Q 005181 641 ----IGIEHLRNLKLLRFDCMVK-----QVYY---MT--KDENWGKVTEHIPDVLVTFLAAGRVFQYRKDILSS 700 (710)
Q Consensus 641 ----~~~~~l~~L~~L~l~~~~~-----~~~~---~~--~~~~~n~~~~~ip~~~~~~~~~l~~l~l~~N~l~~ 700 (710)
..+.++++|+.|+++++-. .+.. .+ .++++|.+....+..+...+++|+.|++++|.++.
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred hHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 1245566666666654310 0100 01 11334444333333332335889999999998853
No 119
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.60 E-value=9.1e-15 Score=155.86 Aligned_cols=298 Identities=12% Similarity=0.096 Sum_probs=175.4
Q ss_pred CCCCCceeecccchhhc---c---------CCCeEEEE--EcCCCCCHHHHHHHhhCCcccc---cCcC-cEEEEEeCCC
Q 005181 18 NFPHAGFSGKEDNNQLI---Q---------SERSVVAV--VGEGGLGKTTVAGKIFNSEGLK---THFN-CRAWITVGKE 79 (710)
Q Consensus 18 ~~~~~~~vGre~~~~~i---~---------~~~~~i~i--~G~~GvGKTtla~~~~~~~~~~---~~f~-~~~~v~~~~~ 79 (710)
...+..|+||+.+++.+ - ...+.+.| +|++|+||||+|+++++..... ..+. .++|+.+...
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 34468899999988776 2 35678888 9999999999999998763211 0122 4678887776
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhc--CCceEEEEecCCCcc--------hHHHHHHhcCCC
Q 005181 80 YKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLK--DKSYMVVFDDVWKID--------FWGDVEYALLDS 149 (710)
Q Consensus 80 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~LlvlDdv~~~~--------~~~~~~~~l~~~ 149 (710)
.+...++..++..++.... ....+..++...+.+.+. +++++||+||++... .+..+...+...
T Consensus 98 ~~~~~~~~~l~~~l~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~ 171 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQ------VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI 171 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCC------CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS
T ss_pred CCHHHHHHHHHHHhCCCCC------CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc
Confidence 7888888888888754311 011233455666666664 678999999997642 222222222111
Q ss_pred ---C--CCcEEEEEcCchhhhhhcc-------CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHH
Q 005181 150 ---K--KCGRIIVTTRHMNVAKYCK-------SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILA 217 (710)
Q Consensus 150 ---~--~~~~ilvTtR~~~~~~~~~-------~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 217 (710)
. ....+|+||+...+..... .. ....+.+++++.+++.++|...+.....+ .....+.+..|++
T Consensus 172 ~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~-~~~~i~l~~l~~~e~~~ll~~~~~~~~~~---~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 172 PSRDGVNRIGFLLVASDVRALSYMREKIPQVESQ-IGFKLHLPAYKSRELYTILEQRAELGLRD---TVWEPRHLELISD 247 (412)
T ss_dssp CCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTT-CSEEEECCCCCHHHHHHHHHHHHHHHBCT---TSCCHHHHHHHHH
T ss_pred ccCCCCceEEEEEEeccccHHHHHhhhcchhhhh-cCCeeeeCCCCHHHHHHHHHHHHHhcCCC---CCCChHHHHHHHH
Confidence 1 3345777887655332211 11 11349999999999999997664211001 1112467888899
Q ss_pred HhC------CCchHHHHHHhh-hc-----CC-CCCHHHHHHHHHhhccccCCCcchhhHHHHHHhcccCCchhHHHHHhh
Q 005181 218 KCG------GLPLAIVAVGGL-LS-----TK-NMVVSEWKKLFDRMGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLY 284 (710)
Q Consensus 218 ~~~------g~Plal~~~~~~-l~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~ 284 (710)
.++ |+|..+..+... .. .. ..+.+.+..++..... ...+...++.|++..+.++..
T Consensus 248 ~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-----------~~~~~~~l~~l~~~~~~~l~a 316 (412)
T 1w5s_A 248 VYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-----------ASIQTHELEALSIHELIILRL 316 (412)
T ss_dssp HHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-----------------CCSSSSSCHHHHHHHHH
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-----------cchHHHHHHcCCHHHHHHHHH
Confidence 999 999655443322 10 11 1123334433333210 123455678899999999988
Q ss_pred hcCCC--CCcccchhHHHHHH--HH-CCCCCCCCCCCHHHHHHHHHHHHhhCCceeeeec
Q 005181 285 FGLFP--ESCKVNCARLIRLW--IA-EGFVPYCKRPTSEQVAEECLNELIDRSLVQVSER 339 (710)
Q Consensus 285 la~f~--~~~~~~~~~l~~~w--~~-~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~ 339 (710)
++.+. ....++..++...+ ++ .-. .. .......+..+++.|++.+++.....
T Consensus 317 ia~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~l~~L~~~gli~~~~~ 373 (412)
T 1w5s_A 317 IAEATLGGMEWINAGLLRQRYEDASLTMY-NV--KPRGYTQYHIYLKHLTSLGLVDAKPS 373 (412)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHHHHHHS-CC--CCCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHhhc-CC--CCCCHHHHHHHHHHHHhCCCEEeecc
Confidence 88653 22234444443322 12 111 00 11123456788999999999987643
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=2.3e-15 Score=146.08 Aligned_cols=152 Identities=19% Similarity=0.122 Sum_probs=96.9
Q ss_pred ceEEEeccccccccCcchhcccCCCEEEcCCCccccc-cccccccccCcEEEccccccccCccCCchhhhhccCCCCcCc
Q 005181 453 LHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSEL-PVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYL 531 (710)
Q Consensus 453 L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L 531 (710)
-+.++.+++.++.+|..+. ++|++|+|++|.+..+ |..+.++++|++|++++ |.+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l--------------------- 76 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQL--------------------- 76 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCC---------------------
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC-CCC---------------------
Confidence 4556666666666665543 6666777766666555 33455666666666653 222
Q ss_pred cEEEEeecCCCCC-ccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCC
Q 005181 532 QRLYLMGNMKKLP-DWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFV 610 (710)
Q Consensus 532 ~~L~L~~n~~~ip-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 610 (710)
..+| ..|..+++|+.|+|++|.++...+..|..+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.
T Consensus 77 ---------~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 77 ---------GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp ---------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSC
T ss_pred ---------CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCc
Confidence 2233 245677777777777777777666667777777777777777664 34455666777777777776
Q ss_pred CceeeeecCCcCCCccEEEEccCCCCCC
Q 005181 611 AVKSVIIEKGAMPDIRELEIGPCPLLME 638 (710)
Q Consensus 611 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 638 (710)
+....+..+..+++|+.|++++|++...
T Consensus 147 l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 147 LKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 6554445566677777777777776543
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=6.4e-15 Score=142.89 Aligned_cols=149 Identities=22% Similarity=0.265 Sum_probs=102.2
Q ss_pred ccEEecCCCCCccCcccccCcccceEEEecccccccc-CcchhcccCCCEEEcCCCcccccccc-ccccccCcEEEcccc
Q 005181 430 MKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKII-PKSIRNLLSLEILDLKNTLVSELPVE-IRNLKKLRYLMVYRY 507 (710)
Q Consensus 430 L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~ 507 (710)
.+.++.+++.++.+|..+. ++|++|++++|.++.+ |..|..+++|++|+|++|.++.+|.. |..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~- 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT- 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC-
Confidence 5668888888888887553 7888888888888855 55588888888888888888888754 57888888888884
Q ss_pred ccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeeccc
Q 005181 508 NYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTY 586 (710)
Q Consensus 508 n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 586 (710)
|.+++..+. .+...++|+.|+|++| +..+|..+..+++|+.|+|++|.++...+..|..+++|+.|+|++|.
T Consensus 98 N~l~~l~~~-------~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSA-------VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTT-------TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChh-------HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 555533321 2223345666666666 55666666666666666666666666555556666666666666665
Q ss_pred CC
Q 005181 587 DY 588 (710)
Q Consensus 587 ~~ 588 (710)
+.
T Consensus 171 ~~ 172 (229)
T 3e6j_A 171 WD 172 (229)
T ss_dssp BC
T ss_pred cc
Confidence 43
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=8.8e-16 Score=160.17 Aligned_cols=174 Identities=22% Similarity=0.213 Sum_probs=131.8
Q ss_pred CcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCc-ccc-CCCCccEEEEEeeccCCcccccccccc
Q 005181 499 LRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPD-WIF-KLENLIRLGLELSGLAEEPIRVLQASP 575 (710)
Q Consensus 499 L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~-~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~ 575 (710)
-+.+++++ +.++... . ..+..++.|+|++| +..++. .+. .+++|+.|+|++|.++...+..|..++
T Consensus 20 ~~~l~c~~-~~l~~iP-~---------~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 20 SNILSCSK-QQLPNVP-Q---------SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88 (361)
T ss_dssp TTEEECCS-SCCSSCC-S---------SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCEEEeCC-CCcCccC-c---------cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence 36788873 4554322 1 23457899999998 666654 455 899999999999999888888899999
Q ss_pred ccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccc-c---ccCCCCcE
Q 005181 576 NLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIG-I---EHLRNLKL 651 (710)
Q Consensus 576 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~---~~l~~L~~ 651 (710)
+|+.|+|++|.+....+..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+.. +|.. + ..+++|+.
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLML 167 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCE
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCE
Confidence 99999999999887766678889999999999999887777888899999999999999774 5544 4 56899999
Q ss_pred EEEecCcHHHHHhcccCCcCccccCcCeEEEEEEeC--CeeeEeehhhhc
Q 005181 652 LRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFLAA--GRVFQYRKDILS 699 (710)
Q Consensus 652 L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~~~--l~~l~l~~N~l~ 699 (710)
|+|++ |.+..+|...+..++. ++.+++++|.+.
T Consensus 168 L~L~~---------------N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 168 LDLSS---------------NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EECCS---------------SCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EECCC---------------CCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99984 3344666544333344 467899999887
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=2.5e-15 Score=148.98 Aligned_cols=151 Identities=19% Similarity=0.167 Sum_probs=125.0
Q ss_pred hhcccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEE
Q 005181 423 SIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYL 502 (710)
Q Consensus 423 ~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L 502 (710)
.+..+++|++|++++|.++.++ .+..+++|+.|++++|.++.+|. +..+++|++|++++|.++.+|.... ++|++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 4678899999999999998887 68889999999999999998876 8899999999999999988876433 899999
Q ss_pred EccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEE
Q 005181 503 MVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELR 581 (710)
Q Consensus 503 ~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 581 (710)
++++ |.+++.. .+ ..+++|+.|+|++| +..++ .+..+++|+.|++++|.+++. ..+..+++|+.|+
T Consensus 112 ~L~~-N~l~~~~--------~l-~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 112 FLDN-NELRDTD--------SL-IHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWID 178 (263)
T ss_dssp ECCS-SCCSBSG--------GG-TTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEE
T ss_pred EccC-CccCCCh--------hh-cCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEe
Confidence 9984 5555432 22 33458999999998 67776 688899999999999999875 6788999999999
Q ss_pred eecccCCce
Q 005181 582 LTGTYDYEL 590 (710)
Q Consensus 582 L~~n~~~~~ 590 (710)
+++|.+...
T Consensus 179 l~~N~~~~~ 187 (263)
T 1xeu_A 179 LTGQKCVNE 187 (263)
T ss_dssp EEEEEEECC
T ss_pred CCCCcccCC
Confidence 999987655
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=9.2e-18 Score=184.60 Aligned_cols=194 Identities=16% Similarity=0.098 Sum_probs=154.3
Q ss_pred cccccccEEecCCCCCccCcccccCcccceEEEecccc-------------cc-ccCcchhcccCCCEEE-cCCCccccc
Q 005181 425 ANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTE-------------VK-IIPKSIRNLLSLEILD-LKNTLVSEL 489 (710)
Q Consensus 425 ~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~-------------i~-~lp~~~~~l~~L~~L~-l~~n~~~~~ 489 (710)
..+++|+.|+|++|.++.+|..++++++|+.|++++|. .. .+|..+..+++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 56889999999999999999999999999999997774 23 5566788899999998 666654444
Q ss_pred cc------cccc--cccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeec-CCCCCccccCCCCccEEEEEe
Q 005181 490 PV------EIRN--LKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGN-MKKLPDWIFKLENLIRLGLEL 560 (710)
Q Consensus 490 ~~------~~~~--l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~ 560 (710)
+. .+.. ...|+.|++++ |.+++.. . +..+++|+.|+|++| +..+|..++.+++|+.|+|++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~-n~l~~lp--------~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAH-KDLTVLC--------H-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTT-SCCSSCC--------C-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS
T ss_pred hhhhhhcccccccCccCceEEEecC-CCCCCCc--------C-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC
Confidence 32 1111 23689999994 6666532 2 233458999999999 889999999999999999999
Q ss_pred eccCCccccccccccccceEEeecccCCcee-EEecCCCCcccEEEeccCCCceeeeec---CCcCCCccEEEE
Q 005181 561 SGLAEEPIRVLQASPNLLELRLTGTYDYELF-HFEAGWFPKLQKLLLWDFVAVKSVIIE---KGAMPDIRELEI 630 (710)
Q Consensus 561 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~~---~~~l~~L~~L~l 630 (710)
|.+++. | .++.+++|+.|+|++|.+.+.. |..++.+++|+.|+|++|.+.+.+|.. +..+|+|+.|++
T Consensus 496 N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 496 NALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999884 4 8999999999999999998876 778899999999999999987765432 234889998864
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=7.6e-16 Score=174.83 Aligned_cols=181 Identities=19% Similarity=0.185 Sum_probs=101.4
Q ss_pred hhhhhhcccccccEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCcccccccccccccc
Q 005181 419 FMNASIANFKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKK 498 (710)
Q Consensus 419 ~~~~~~~~~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~ 498 (710)
.++..|..+++|+.|+|++|.+..+|..+.++++|++|+|++|.|+.+|..|.++++|++|+|++|.++.+|..|++|++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 44566777777777777777777777666677777777777777777777777777777777777777777777777777
Q ss_pred CcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCcccccccccc-cc
Q 005181 499 LRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASP-NL 577 (710)
Q Consensus 499 L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L 577 (710)
|++|+|++ |. ++.+|..|..+++|+.|+|++|.+++.+|..+..+. .+
T Consensus 295 L~~L~L~~-N~------------------------------l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 343 (727)
T 4b8c_D 295 LKYFYFFD-NM------------------------------VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG 343 (727)
T ss_dssp CSEEECCS-SC------------------------------CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH
T ss_pred CCEEECCC-CC------------------------------CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh
Confidence 77777763 33 335666788888999999999998887777776542 22
Q ss_pred ceEEeecccCCceeEEecCCCCcccEEEeccC--------CCceeeeecCCcCCCccEEEEccCCCC
Q 005181 578 LELRLTGTYDYELFHFEAGWFPKLQKLLLWDF--------VAVKSVIIEKGAMPDIRELEIGPCPLL 636 (710)
Q Consensus 578 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n--------~~~~~~~~~~~~l~~L~~L~l~~n~~~ 636 (710)
..|+|++|.+...+| ..|+.|+++.| .+....+..+..+.++....+++|-+.
T Consensus 344 ~~l~l~~N~l~~~~p------~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 344 LIFYLRDNRPEIPLP------HERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHCCCCCCCC------CC-----------------------------------------CCC
T ss_pred hHHhhccCcccCcCc------cccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 346777887765433 35666677666 122222333445566666777777654
No 126
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=6.1e-14 Score=146.30 Aligned_cols=297 Identities=13% Similarity=0.112 Sum_probs=170.0
Q ss_pred CCCceeecccchhhccCCC--eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC-----CCHHHHHHHHHHH
Q 005181 20 PHAGFSGKEDNNQLIQSER--SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE-----YKKNDLLRTILKE 92 (710)
Q Consensus 20 ~~~~~vGre~~~~~i~~~~--~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~-----~~~~~~~~~i~~~ 92 (710)
.+..|+||+.+++.+.. . +++.|+|++|+|||||++++++.. .. .++|+.+... .+.......+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYKDFLLELQKE 84 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHHHHHHHHHHH
Confidence 46789999999988722 2 699999999999999999998762 22 3688887642 3445555555444
Q ss_pred Hhhh------------c--C---CCCCccc-----cchhHHHHHHHHHHHhcCCceEEEEecCCCcc-----hHHHHHHh
Q 005181 93 FHRV------------A--N---QPAPVEI-----HDMEEMELITTLRDHLKDKSYMVVFDDVWKID-----FWGDVEYA 145 (710)
Q Consensus 93 l~~~------------~--~---~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-----~~~~~~~~ 145 (710)
+... . + ....... .......+.+.+.+..+ ++++||+||++..+ ++..+...
T Consensus 85 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~ 163 (357)
T 2fna_A 85 INKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAY 163 (357)
T ss_dssp HHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHH
T ss_pred HHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHH
Confidence 3210 0 0 0000000 01233445555544333 48999999997743 22222222
Q ss_pred cCCCCCCcEEEEEcCchhhhhhc----c----CC-CCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHH
Q 005181 146 LLDSKKCGRIIVTTRHMNVAKYC----K----SS-SSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDIL 216 (710)
Q Consensus 146 l~~~~~~~~ilvTtR~~~~~~~~----~----~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 216 (710)
+.+...+.++|+|++........ . .. .....+.+.+|+.+|+.+++....... +.... + ..+|+
T Consensus 164 ~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~--~~~~~----~-~~~i~ 236 (357)
T 2fna_A 164 AYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA--DIDFK----D-YEVVY 236 (357)
T ss_dssp HHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHH--TCCCC----C-HHHHH
T ss_pred HHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHc--CCCCC----c-HHHHH
Confidence 22222356899999876532211 0 11 112578999999999999998764210 00111 1 27899
Q ss_pred HHhCCCchHHHHHHhhhcCCCCCHHHHHHH-HHhhccccCCCcchhhHHHHHHhcc---cCCchhHHHHHhhhcCCCCCc
Q 005181 217 AKCGGLPLAIVAVGGLLSTKNMVVSEWKKL-FDRMGSILGSDPHLKDCNRVLSEGY---HDLPHHLKSCLLYFGLFPESC 292 (710)
Q Consensus 217 ~~~~g~Plal~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~s~---~~L~~~~~~~~l~la~f~~~~ 292 (710)
+.++|+|+++..++..+... .+...|... .+... ..+...+...+ ..+++..+..+..+|. +.
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~ 303 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDN-KNLDFAINQTLEYAK---------KLILKEFENFLHGREIARKRYLNIMRTLSK---CG 303 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHH-CCHHHHHHHHHHHHH---------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB
T ss_pred HHhCCCHHHHHHHHHHHccc-cchHHHHHHHHHHHH---------HHHHHHHHHHhhccccccHHHHHHHHHHHc---CC
Confidence 99999999999888765432 123333221 11100 11111122111 1678889999999887 22
Q ss_pred ccchhHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeeecCCCCCEeEEE-EcHhHHHHH
Q 005181 293 KVNCARLIRLWI-AEGFVPYCKRPTSEQVAEECLNELIDRSLVQVSERDISGRARICQ-VHDLMHEIV 358 (710)
Q Consensus 293 ~~~~~~l~~~w~-~~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~-~h~li~~~~ 358 (710)
+...+....- ..|. ......+..+++.|++.+++.... + . |. .|++++++.
T Consensus 304 --~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~----~--~-y~f~~~~~~~~l 356 (357)
T 2fna_A 304 --KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG----E--K-YCPSEPLISLAF 356 (357)
T ss_dssp --CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS----S--C-EEESSHHHHHHT
T ss_pred --CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC----C--E-EEecCHHHHHhh
Confidence 4444432110 1121 012345778899999999997642 1 1 45 577888763
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=1.7e-15 Score=171.89 Aligned_cols=163 Identities=20% Similarity=0.036 Sum_probs=104.3
Q ss_pred EecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccC
Q 005181 433 LDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTG 512 (710)
Q Consensus 433 L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~ 512 (710)
+++..|.+...+..+..+++|+.|+|++|.+..+|..+.++++|++|+|++|.+..+|..|.++++|++|+|++ |.+
T Consensus 206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l-- 282 (727)
T 4b8c_D 206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRL-- 282 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCC--
T ss_pred ccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcC--
Confidence 34444555444666777778888888888887777777777888888888777777777777777777777773 333
Q ss_pred ccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeE
Q 005181 513 SIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFH 592 (710)
Q Consensus 513 ~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 592 (710)
..+|..+..+++|++|+|++|.++. .|..|+.+++|+.|+|++|.+.+.+|
T Consensus 283 ----------------------------~~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 283 ----------------------------TSLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp ----------------------------SSCCSSGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred ----------------------------CccChhhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCCh
Confidence 3456778889999999999999975 46679999999999999999887766
Q ss_pred EecCCCC-cccEEEeccCCCceeeeecCCcCCCccEEEEccC
Q 005181 593 FEAGWFP-KLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPC 633 (710)
Q Consensus 593 ~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 633 (710)
..+..+. .+..|+|++|.+.+.+|. .|..|+++.|
T Consensus 334 ~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 334 KILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred HHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 5554332 223467888888776654 4566667766
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=1.8e-12 Score=136.52 Aligned_cols=291 Identities=18% Similarity=0.116 Sum_probs=177.8
Q ss_pred CCceeecccchhhc---------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccc----cC--cCcEEEEEeCCCC-CHHH
Q 005181 21 HAGFSGKEDNNQLI---------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLK----TH--FNCRAWITVGKEY-KKND 84 (710)
Q Consensus 21 ~~~~vGre~~~~~i---------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~----~~--f~~~~~v~~~~~~-~~~~ 84 (710)
|++|+||+.+++.+ ....+.+.|+|++|+||||+|+++++..... .. ...++|+++.... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 58899999999877 3346789999999999999999998763111 11 2356788877666 7788
Q ss_pred HHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcch--HHHH-HHhcCCCCCCcEEEEEcCc
Q 005181 85 LLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKIDF--WGDV-EYALLDSKKCGRIIVTTRH 161 (710)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~~--~~~~-~~~l~~~~~~~~ilvTtR~ 161 (710)
++..++..+..... .....+...+...+.+.+..++.+||+||++.... .... ...+.....+..+|+||+.
T Consensus 99 ~~~~l~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~ 173 (384)
T 2qby_B 99 VLSSLAGKLTGFSV-----PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHHCSCC-----CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSS
T ss_pred HHHHHHHHhcCCCC-----CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECC
Confidence 88888887743211 11122234567777778877666999999977532 1122 2222222266688888887
Q ss_pred hhhh----hhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhC---CCch-HHHHHHhhh
Q 005181 162 MNVA----KYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCG---GLPL-AIVAVGGLL 233 (710)
Q Consensus 162 ~~~~----~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~l 233 (710)
.... ...... ....+.+++++.++..+++...+.....+... ..+.++.+++.++ |.|. ++.++....
T Consensus 174 ~~~~~~l~~~l~sr-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 174 INVRDYMEPRVLSS-LGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY---DDEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp TTTTTTSCHHHHHT-CCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC---CSHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhc-CCCeEEECCCCHHHHHHHHHHHHHhhcccCCc---CHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 5321 111111 11489999999999999999886321101111 2355677777777 8876 433333222
Q ss_pred --c--CCCCCHHHHHHHHHhhccccCCCcchhhHHHHHHhcccCCchhHHHHHhhhcCCCCC-cccchhHHHHHHHHCCC
Q 005181 234 --S--TKNMVVSEWKKLFDRMGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGLFPES-CKVNCARLIRLWIAEGF 308 (710)
Q Consensus 234 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~la~f~~~-~~~~~~~l~~~w~~~g~ 308 (710)
. ....+.+.+..++.+.. ...+..++..|++.++..+..++. ... ..+. ... ..+++..
T Consensus 250 ~~a~~~~~i~~~~v~~~~~~~~------------~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~--~~~~~~~ 313 (384)
T 2qby_B 250 QLASGGGIIRKEHVDKAIVDYE------------QERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMY--TDLCNKF 313 (384)
T ss_dssp HHTTSSSCCCHHHHHHHHHHHH------------HHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHH--HHHHHHT
T ss_pred HHhcCCCccCHHHHHHHHHHHh------------cchHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHH--HHHHHHc
Confidence 1 12245666666665532 134566778889888888887776 211 1110 011 1122211
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCceeeeec
Q 005181 309 VPYCKRPTSEQVAEECLNELIDRSLVQVSER 339 (710)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~ 339 (710)
. ........+..+++.|++.+++.....
T Consensus 314 g---~~~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 314 K---QKPLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp T---CCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred C---CCCCCHHHHHHHHHHHHhCCCEEEEec
Confidence 1 012234567888999999999987654
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=4.3e-14 Score=129.96 Aligned_cols=134 Identities=21% Similarity=0.173 Sum_probs=84.3
Q ss_pred ccccccEEecCCCCCc--cCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCcccc-ccccccccccCcEE
Q 005181 426 NFKLMKVLDLEDAPVD--YLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSE-LPVEIRNLKKLRYL 502 (710)
Q Consensus 426 ~~~~L~~L~l~~n~~~--~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~-~~~~~~~l~~L~~L 502 (710)
..++|+.|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.. +|..+.++++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3466777777777776 6776677777777777777777766 567777777777777777666 55555557777777
Q ss_pred EccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCccc---cccccccccce
Q 005181 503 MVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPI---RVLQASPNLLE 579 (710)
Q Consensus 503 ~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~ 579 (710)
++++ |.+++... +..+..+++|+.|++++|.++..++ ..+..+++|+.
T Consensus 101 ~Ls~-N~l~~~~~----------------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 101 NLSG-NKLKDIST----------------------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp ECBS-SSCCSSGG----------------------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred eccC-CccCcchh----------------------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 7763 33332210 1234556666666666666655443 35556666666
Q ss_pred EEeecccCCc
Q 005181 580 LRLTGTYDYE 589 (710)
Q Consensus 580 L~L~~n~~~~ 589 (710)
|++++|...+
T Consensus 152 L~l~~n~~~~ 161 (168)
T 2ell_A 152 LDGYDREDQE 161 (168)
T ss_dssp ETTEETTSCB
T ss_pred ecCCCCChhh
Confidence 6666655433
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=6.5e-14 Score=144.07 Aligned_cols=261 Identities=10% Similarity=-0.010 Sum_probs=172.1
Q ss_pred CCceeEEEEEccCcccc-cccCCCCceeEEEeecCCCCCcchhhhhhcc--------cccccEEecCCCCCccC-ccccc
Q 005181 379 CSKTRRIAIQRSIDDGA-LESIKDSKVRSVFLFNVDKLPDSFMNASIAN--------FKLMKVLDLEDAPVDYL-PEGVG 448 (710)
Q Consensus 379 ~~~~r~l~l~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~--------~~~L~~L~l~~n~~~~l-~~~~~ 448 (710)
.++++.|.+..+.+... ......+.++.+..... .++...|.+ |++|+.|+|.+ .++.+ +.+|.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~-----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN-----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT-----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc-----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 35677777776666511 01112222222222221 345566777 88888888888 77777 45677
Q ss_pred CcccceEEEeccccccccCcc-hhcccCCCEEEcCCCcc----ccc-cccccccccCc-EEEccccccccCccCCchhhh
Q 005181 449 NLFNLHYLSVKNTEVKIIPKS-IRNLLSLEILDLKNTLV----SEL-PVEIRNLKKLR-YLMVYRYNYTTGSIMPAEAVA 521 (710)
Q Consensus 449 ~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~----~~~-~~~~~~l~~L~-~L~l~~~n~~~~~~~~~~~~~ 521 (710)
+|++|+.|++++|.+..+++. |.++.++..+.+..+.. ..+ +..|.++.+|+ .+.+.....+. ...
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~-------~~~ 194 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE-------DEI 194 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH-------HHH
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH-------HHH
Confidence 888888888888888766554 77777777666654221 122 22355666666 44443211110 001
Q ss_pred hccCCCCcCccEEEEeecCCCCC-ccc-cCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCC
Q 005181 522 KSLSSPPQYLQRLYLMGNMKKLP-DWI-FKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFP 599 (710)
Q Consensus 522 ~~l~~~~~~L~~L~L~~n~~~ip-~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 599 (710)
......+.++..+.+.+++.... ..+ ..+++|+.|+|++|.++......|..|.+|+.|+|.+| +..+.+..|.+++
T Consensus 195 ~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp HHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence 11112234677888877632211 112 34899999999999999888899999999999999987 6666677889999
Q ss_pred ccc-EEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEE
Q 005181 600 KLQ-KLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRF 654 (710)
Q Consensus 600 ~L~-~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 654 (710)
+|+ .+++.+ .+....+..|.+|++|+.|++++|.+...-+..|.+|++|+.++.
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999 999988 555555578999999999999999987655668999999999864
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.47 E-value=4.6e-14 Score=132.71 Aligned_cols=123 Identities=17% Similarity=0.108 Sum_probs=63.3
Q ss_pred EEEEeec-CCCCCccccCCCCccEEEEEeeccCCcccc-ccccccccceEEeecccCCceeEEecCCCCcccEEEeccCC
Q 005181 533 RLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIR-VLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFV 610 (710)
Q Consensus 533 ~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 610 (710)
.++++++ ++.+|..+. ++|+.|++++|.++...+. .|+.+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.
T Consensus 12 ~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 3444444 444444332 2555555555555444332 24555555555555555555444445555555555555555
Q ss_pred CceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecC
Q 005181 611 AVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 611 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 657 (710)
+.+..+..+..+++|+.|+|++|.+.+..|..+..+++|++|++++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 55444444555555555555555555444555555555555555554
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=1.7e-12 Score=136.32 Aligned_cols=240 Identities=13% Similarity=0.059 Sum_probs=148.3
Q ss_pred CceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC-cccccCcccceEEEeccccccccCcchhcccCCCEEE
Q 005181 402 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILD 480 (710)
Q Consensus 402 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~ 480 (710)
++++.+.+.+. ...+...+|.++ +|+.+.+.. .+..+ +.+|.+|++|+.+++.+|.++.++...-...+|+.+.
T Consensus 135 ~~L~~i~l~~~---i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 135 SQIAKVVLNEG---LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVL 209 (401)
T ss_dssp CCCSEEECCTT---CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEE
T ss_pred CCccEEEeCCC---ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEE
Confidence 35666665543 134445566664 577777775 55656 4567777777777777777777766633357777777
Q ss_pred cCCCccccccc-cccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCC-ccccCCCCccEEEE
Q 005181 481 LKNTLVSELPV-EIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLP-DWIFKLENLIRLGL 558 (710)
Q Consensus 481 l~~n~~~~~~~-~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip-~~~~~l~~L~~L~L 558 (710)
|.++ +..++. +|.++++|+.+.+.. + ++.... ..+.. .+|+.+.|.+++..++ ..|.+|++|+.+.+
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~-~-l~~I~~-------~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPE-N-VSTIGQ-------EAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCT-T-CCEECT-------TTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEE
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCC-C-ccCccc-------ccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEe
Confidence 7644 555543 466777777777763 2 221111 11222 3677777766666663 35677777777777
Q ss_pred EeeccC-----CccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccC
Q 005181 559 ELSGLA-----EEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPC 633 (710)
Q Consensus 559 ~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 633 (710)
.+|.+. ......|..|++|+.+.|.+ .+..+....|.+|++|+.+.|..+ +...-...|.+| +|+.+++.+|
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 776654 34556777777777777763 355555556677777777777554 333334556677 7777777777
Q ss_pred CCCCCCccccccCC-CCcEEEEecCcHH
Q 005181 634 PLLMEIPIGIEHLR-NLKLLRFDCMVKQ 660 (710)
Q Consensus 634 ~~~~~~p~~~~~l~-~L~~L~l~~~~~~ 660 (710)
......+..|.+++ +++.|++..+...
T Consensus 356 ~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 356 TPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCcccccccccCCCCCccEEEeCHHHHH
Confidence 66544445566663 6777777655443
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=1e-12 Score=138.01 Aligned_cols=264 Identities=11% Similarity=0.076 Sum_probs=196.7
Q ss_pred CceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC-cccccCcccceEEEeccccccccCcc-hhcccCCCEE
Q 005181 402 SKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTEVKIIPKS-IRNLLSLEIL 479 (710)
Q Consensus 402 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L 479 (710)
..+..+.+.+.- ..+...+|.++ +|+.+.+..+ ++.+ ..+|.++ +|+.+.+.. .++.++.. |.++.+|+.+
T Consensus 113 ~~l~~i~ip~~i---~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPNSV---KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCTTC---CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEECCcc---CEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 556666655432 34556778886 7999999877 7777 4567664 799999986 77766654 9999999999
Q ss_pred EcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCc-cccCCCCccEEEE
Q 005181 480 DLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPD-WIFKLENLIRLGL 558 (710)
Q Consensus 480 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~-~~~~l~~L~~L~L 558 (710)
++++|.+..++.....+.+|+.+.+.. + ++... ...+..+.+|+.+.+..++..++. .|.+ .+|+.+.+
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~-~-l~~I~-------~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPV-T-LKEIG-------SQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCT-T-CCEEC-------TTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEE
T ss_pred ecCCCcceEechhhEeecccCEEEeCC-c-hheeh-------hhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEe
Confidence 999999999988655579999999973 2 32222 134556679999999998777765 4555 89999999
Q ss_pred EeeccCCccccccccccccceEEeecccCC-----ceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccC
Q 005181 559 ELSGLAEEPIRVLQASPNLLELRLTGTYDY-----ELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPC 633 (710)
Q Consensus 559 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~-----~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 633 (710)
.+.++......|.+|++|+.+.+.+|... .+....|.+|++|+.+.|.+ .+.......|.+|++|+.+.|..+
T Consensus 256 -p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 -PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp -ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred -CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 55677777899999999999999987654 45556789999999999985 455544567889999999999765
Q ss_pred CCCCCCccccccCCCCcEEEEecCcHHHHHhcccCCcCccccCcCeEEEEEE-eCCeeeEeehhhhccC
Q 005181 634 PLLMEIPIGIEHLRNLKLLRFDCMVKQVYYMTKDENWGKVTEHIPDVLVTFL-AAGRVFQYRKDILSSL 701 (710)
Q Consensus 634 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~n~~~~~ip~~~~~~~-~~l~~l~l~~N~l~~~ 701 (710)
+...-+..|.+| +|+.|++++| . ...++...|..+ ..+..+.+-.|.+...
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n--------------~-~~~l~~~~F~~~~~~l~~l~vp~~~~~~y 385 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGT--------------T-PPQVFEKVWYGFPDDITVIRVPAESVEKY 385 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCS--------------S-CCBCCCSSCCCSCTTCCEEEECGGGHHHH
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCC--------------C-CcccccccccCCCCCccEEEeCHHHHHHh
Confidence 444445678999 9999999853 2 234444444443 3677888888877643
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.45 E-value=2.9e-13 Score=127.17 Aligned_cols=125 Identities=21% Similarity=0.278 Sum_probs=86.9
Q ss_pred cEEecCCCCCccCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccc-cccccccCcEEEcccccc
Q 005181 431 KVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPV-EIRNLKKLRYLMVYRYNY 509 (710)
Q Consensus 431 ~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~n~ 509 (710)
+++++++|.++.+|..+. ++|+.|++++|.++.+|..|.++++|++|+|++|.++.+++ .|.++++|++|+|++ |.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-Cc
Confidence 578888888888886553 57888888888888888778888888888888888877764 477777777777773 44
Q ss_pred ccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccC
Q 005181 510 TTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYD 587 (710)
Q Consensus 510 ~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 587 (710)
+++.. |..|..+++|+.|+|++|.++..++..|..+++|+.|+|++|.+
T Consensus 90 l~~i~-----------------------------~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIP-----------------------------PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCC-----------------------------TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeC-----------------------------HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 43222 22455666666666666666655555566666666666666543
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=3e-14 Score=131.00 Aligned_cols=126 Identities=19% Similarity=0.112 Sum_probs=67.3
Q ss_pred cCccEEEEeec-CC--CCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEE
Q 005181 529 QYLQRLYLMGN-MK--KLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLL 605 (710)
Q Consensus 529 ~~L~~L~L~~n-~~--~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 605 (710)
++|+.|++++| +. .+|..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+...+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 35555555555 33 4555555566666666666665543 4555566666666666655554444444455566666
Q ss_pred eccCCCceee-eecCCcCCCccEEEEccCCCCCCCc---cccccCCCCcEEEEec
Q 005181 606 LWDFVAVKSV-IIEKGAMPDIRELEIGPCPLLMEIP---IGIEHLRNLKLLRFDC 656 (710)
Q Consensus 606 L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~l~~ 656 (710)
+++|.+.+.. +..+..+++|+.|++++|++.+..+ ..+..+++|++|++++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 6555544321 1345555566666666665543222 2455555666665554
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=1.9e-13 Score=128.46 Aligned_cols=90 Identities=17% Similarity=0.136 Sum_probs=45.7
Q ss_pred cCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccE
Q 005181 548 FKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRE 627 (710)
Q Consensus 548 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 627 (710)
..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+.+..|..+..+++|+.
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 34444444444444444444444444555555555555544444444445555555555555555544555555555555
Q ss_pred EEEccCCCCC
Q 005181 628 LEIGPCPLLM 637 (710)
Q Consensus 628 L~l~~n~~~~ 637 (710)
|++++|++.+
T Consensus 131 L~L~~N~l~c 140 (192)
T 1w8a_A 131 LNLASNPFNC 140 (192)
T ss_dssp EECTTCCBCC
T ss_pred EEeCCCCccC
Confidence 5555555543
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=6.8e-14 Score=125.74 Aligned_cols=128 Identities=24% Similarity=0.174 Sum_probs=93.9
Q ss_pred ccccccEEecCCCCCc--cCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCcccc-ccccccccccCcEE
Q 005181 426 NFKLMKVLDLEDAPVD--YLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSE-LPVEIRNLKKLRYL 502 (710)
Q Consensus 426 ~~~~L~~L~l~~n~~~--~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~-~~~~~~~l~~L~~L 502 (710)
..++|+.|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4577888888888887 7787778888888888888888876 667888888888888888776 66666678888888
Q ss_pred EccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccccCCCCccEEEEEeeccCCccc---cccccccccce
Q 005181 503 MVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPI---RVLQASPNLLE 579 (710)
Q Consensus 503 ~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~ 579 (710)
++++ |.+++.. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.
T Consensus 94 ~ls~-N~i~~~~----------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 94 NLSG-NKIKDLS----------------------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp ECTT-SCCCSHH----------------------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred ECCC-CcCCChH----------------------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 8874 4443221 01345667777777777777766554 46677777777
Q ss_pred EEee
Q 005181 580 LRLT 583 (710)
Q Consensus 580 L~L~ 583 (710)
|+++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 7765
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.43 E-value=1.7e-14 Score=148.39 Aligned_cols=98 Identities=15% Similarity=0.230 Sum_probs=51.5
Q ss_pred CCceeEEEeecCCCCCcchhhhhhcc-cccccEEecCCCCCccCcccccCcccceEEEeccccccccCcc-hhc------
Q 005181 401 DSKVRSVFLFNVDKLPDSFMNASIAN-FKLMKVLDLEDAPVDYLPEGVGNLFNLHYLSVKNTEVKIIPKS-IRN------ 472 (710)
Q Consensus 401 ~~~l~~l~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~l~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~------ 472 (710)
..++..|.+.+.-. ...+ ..+.. +++|++|||++|.+..+...-+.++.++.+.+..| .+|+. |.+
T Consensus 24 ~~~l~~L~l~g~i~--~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKLN--AEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEEC--HHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEE
T ss_pred hCceeEEEEecccc--HHHH-HHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccc
Confidence 44666677665322 1111 23333 77788888888887622111112223344444444 22322 555
Q ss_pred --ccCCCEEEcCCCccccccc-cccccccCcEEEcc
Q 005181 473 --LLSLEILDLKNTLVSELPV-EIRNLKKLRYLMVY 505 (710)
Q Consensus 473 --l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~ 505 (710)
+++|+.|+|.+ .+..++. +|.++++|+.|++.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~ 132 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIR 132 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcC
Confidence 66777777666 5555554 36666677777666
No 139
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.42 E-value=4e-12 Score=134.09 Aligned_cols=298 Identities=12% Similarity=0.061 Sum_probs=178.0
Q ss_pred CCCCCceeecccchhhc---------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccc----cCcCcEEEEEeCCCCCHHH
Q 005181 18 NFPHAGFSGKEDNNQLI---------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLK----THFNCRAWITVGKEYKKND 84 (710)
Q Consensus 18 ~~~~~~~vGre~~~~~i---------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~ 84 (710)
...|+.|+||+.+++.+ ....+.+.|+|++|+||||+|+++++..... +.-..++|+++....+...
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 34468999999998887 2456789999999999999999998763111 0012467888888788888
Q ss_pred HHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhc--CCceEEEEecCCCcch----HHHHHHhcC---CC--CCCc
Q 005181 85 LLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLK--DKSYMVVFDDVWKIDF----WGDVEYALL---DS--KKCG 153 (710)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~LlvlDdv~~~~~----~~~~~~~l~---~~--~~~~ 153 (710)
++..++..++... .....+..++...+.+.+. +++.+||+|+++.... .+.+...+. .. ..+.
T Consensus 95 ~~~~l~~~l~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~ 168 (387)
T 2v1u_A 95 VASAIAEAVGVRV------PFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWV 168 (387)
T ss_dssp HHHHHHHHHSCCC------CSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----C
T ss_pred HHHHHHHHhCCCC------CCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceE
Confidence 8888888885421 1122233455666666664 4688999999987542 122322221 11 3445
Q ss_pred EEEEEcCchhhh----hhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhC---CCch-H
Q 005181 154 RIIVTTRHMNVA----KYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCG---GLPL-A 225 (710)
Q Consensus 154 ~ilvTtR~~~~~----~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-a 225 (710)
.+|.||+..... ......-....+.+++++.++..+++...+.....+.. -..+.++.+++.++ |+|. +
T Consensus 169 ~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~G~~r~~ 245 (387)
T 2v1u_A 169 SLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGV---LDPDVVPLCAALAAREHGDARRA 245 (387)
T ss_dssp EEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTT---BCSSHHHHHHHHHHSSSCCHHHH
T ss_pred EEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCC---CCHHHHHHHHHHHHHhccCHHHH
Confidence 677777765321 11111111147899999999999999988532100111 12245677777887 9993 3
Q ss_pred HHHHHhhh---c--C-CCCCHHHHHHHHHhhccccCCCcchhhHHHHHHhcccCCchhHHHHHhhhcCCCCC-cccchhH
Q 005181 226 IVAVGGLL---S--T-KNMVVSEWKKLFDRMGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGLFPES-CKVNCAR 298 (710)
Q Consensus 226 l~~~~~~l---~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~la~f~~~-~~~~~~~ 298 (710)
+.++.... . + ...+.+.+..++.... ...+..++..|+++.+..+..++.+..+ ..+....
T Consensus 246 ~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~------------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~ 313 (387)
T 2v1u_A 246 LDLLRVAGEIAERRREERVRREHVYSARAEIE------------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGE 313 (387)
T ss_dssp HHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH------------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHH
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh------------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 33322222 1 1 2235566666555431 1235566788999888888777733222 2344443
Q ss_pred HHHHH--HHCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeeec
Q 005181 299 LIRLW--IAEGFVPYCKRPTSEQVAEECLNELIDRSLVQVSER 339 (710)
Q Consensus 299 l~~~w--~~~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~ 339 (710)
+.... .++... ........+..+++.|...+++.....
T Consensus 314 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~~L~~~gli~~~~~ 353 (387)
T 2v1u_A 314 IYERYKELTSTLG---LEHVTLRRVSGIISELDMLGIVKSRVV 353 (387)
T ss_dssp HHHHHHHHHHHTT---CCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhCCCeEEEee
Confidence 33321 221111 112234567889999999999988643
No 140
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.40 E-value=3.2e-11 Score=127.24 Aligned_cols=294 Identities=14% Similarity=0.122 Sum_probs=175.9
Q ss_pred CCCCCceeecccchhhc---------cCCCe--EEEEEcCCCCCHHHHHHHhhCCcccccC-cCcEEEEEeCCCCCHHHH
Q 005181 18 NFPHAGFSGKEDNNQLI---------QSERS--VVAVVGEGGLGKTTVAGKIFNSEGLKTH-FNCRAWITVGKEYKKNDL 85 (710)
Q Consensus 18 ~~~~~~~vGre~~~~~i---------~~~~~--~i~i~G~~GvGKTtla~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~ 85 (710)
...|+.++||+.+++.+ ..... .+.|+|++|+||||+|+++++. .... -..++|+++....+...+
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAI 90 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHH
Confidence 33468899999999887 13334 8999999999999999999876 3222 135678888777778888
Q ss_pred HHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhc--CCceEEEEecCCCcc--hHHHHHHhcCCCC----CCcEEEE
Q 005181 86 LRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLK--DKSYMVVFDDVWKID--FWGDVEYALLDSK----KCGRIIV 157 (710)
Q Consensus 86 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~LlvlDdv~~~~--~~~~~~~~l~~~~----~~~~ilv 157 (710)
...++..++.... ....+..++...+.+.+. +++.+||+|+++..+ ....+...+.... .+..+|+
T Consensus 91 ~~~l~~~l~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~ 164 (389)
T 1fnn_A 91 IGEIARSLNIPFP------RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVI 164 (389)
T ss_dssp HHHHHHHTTCCCC------SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEE
T ss_pred HHHHHHHhCccCC------CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEE
Confidence 8888887743211 112233455566665554 568899999998763 3344444443322 3557777
Q ss_pred EcCchhhhhhccC----CCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHh---------CCCch
Q 005181 158 TTRHMNVAKYCKS----SSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKC---------GGLPL 224 (710)
Q Consensus 158 TtR~~~~~~~~~~----~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Pl 224 (710)
+|+.......... .-....+.+++++.++..+++...+....... .-..+.++.+++.+ +|+|.
T Consensus 165 ~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~G~~r 241 (389)
T 1fnn_A 165 VGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG---SYSEDILQMIADITGAQTPLDTNRGDAR 241 (389)
T ss_dssp EESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT---SSCHHHHHHHHHHHSBSSTTCTTSCCHH
T ss_pred EECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHhhcccCCCCCCcHH
Confidence 8776543222110 00013699999999999999988763210001 11346778888888 78875
Q ss_pred HHH-HHHhhhc-----C-CCCCHHHHHHHHHhhccccCCCcchhhHHHHHHhcccCCchhHHHHHhhhcCCC---CCccc
Q 005181 225 AIV-AVGGLLS-----T-KNMVVSEWKKLFDRMGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGLFP---ESCKV 294 (710)
Q Consensus 225 al~-~~~~~l~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~la~f~---~~~~~ 294 (710)
.+. ++..... + ...+.+....+........ +...+..|+.+.+.++..++.+. .+..+
T Consensus 242 ~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~------------~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~ 309 (389)
T 1fnn_A 242 LAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGI------------SEEVLIGLPLHEKLFLLAIVRSLKISHTPYI 309 (389)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCC------------CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhh------------HHHHHHcCCHHHHHHHHHHHHHHhhccCCCc
Confidence 433 2222111 1 1123344444444332111 12234567788888877777553 22134
Q ss_pred chhHHHHHHHH----CCCCCCCCCCCHHHHHHHHHHHHhhCCceeeeec
Q 005181 295 NCARLIRLWIA----EGFVPYCKRPTSEQVAEECLNELIDRSLVQVSER 339 (710)
Q Consensus 295 ~~~~l~~~w~~----~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~ 339 (710)
+...+...+.. .|.. .-....+..+++.|.+.+++.....
T Consensus 310 ~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 310 TFGDAEESYKIVCEEYGER-----PRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp EHHHHHHHHHHHHHHTTCC-----CCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred cHHHHHHHHHHHHHHcCCC-----CCCHHHHHHHHHHHHhCCCeEEeee
Confidence 44455443322 1211 1124557789999999999988654
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=2.1e-13 Score=126.31 Aligned_cols=130 Identities=17% Similarity=0.221 Sum_probs=83.0
Q ss_pred hcccccccEEecCCCCCccCcccccCcc-cceEEEeccccccccCcchhcccCCCEEEcCCCccccccccc-cccccCcE
Q 005181 424 IANFKLMKVLDLEDAPVDYLPEGVGNLF-NLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEI-RNLKKLRY 501 (710)
Q Consensus 424 ~~~~~~L~~L~l~~n~~~~l~~~~~~l~-~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~-~~l~~L~~ 501 (710)
+.++.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ +.+..+++|++|++++|.++.+|+.+ ..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 5567778888888888777754 33443 788888888887766 56777788888888888777777554 67777777
Q ss_pred EEccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCc--cccCCCCccEEEEEeeccCCcccc---ccccccc
Q 005181 502 LMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPD--WIFKLENLIRLGLELSGLAEEPIR---VLQASPN 576 (710)
Q Consensus 502 L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~--~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~ 576 (710)
|++++ |.++ .+|. .+..+++|+.|++++|.++..+.. .+..+++
T Consensus 93 L~L~~-N~i~------------------------------~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~ 141 (176)
T 1a9n_A 93 LILTN-NSLV------------------------------ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ 141 (176)
T ss_dssp EECCS-CCCC------------------------------CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTT
T ss_pred EECCC-CcCC------------------------------cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCc
Confidence 77773 3332 2222 345556666666666665543221 2555566
Q ss_pred cceEEeeccc
Q 005181 577 LLELRLTGTY 586 (710)
Q Consensus 577 L~~L~L~~n~ 586 (710)
|+.|++++|.
T Consensus 142 L~~Ld~~~n~ 151 (176)
T 1a9n_A 142 VRVLDFQKVK 151 (176)
T ss_dssp CSEETTEECC
T ss_pred cceeCCCcCC
Confidence 6666665554
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=3e-13 Score=127.02 Aligned_cols=123 Identities=15% Similarity=0.027 Sum_probs=69.4
Q ss_pred EEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCC
Q 005181 533 RLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVA 611 (710)
Q Consensus 533 ~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~ 611 (710)
.++++++ +..+|..+. ++|+.|++++|.++. .|..|..+++|+.|+|++|.+....+..|..+++|+.|+|++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 3444444 444554332 455666666666553 235555666666666666665555444555666666666666665
Q ss_pred ceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCc
Q 005181 612 VKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMV 658 (710)
Q Consensus 612 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 658 (710)
....+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 55555556666666666666666554333345666666666666654
No 143
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=2.6e-14 Score=128.49 Aligned_cols=126 Identities=20% Similarity=0.108 Sum_probs=97.9
Q ss_pred CcCccEEEEeec-CC--CCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEE
Q 005181 528 PQYLQRLYLMGN-MK--KLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKL 604 (710)
Q Consensus 528 ~~~L~~L~L~~n-~~--~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 604 (710)
+++|+.|++++| +. .+|..+..+++|+.|++++|.++.. ..++.+++|+.|++++|.+.+.+|..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 346777777777 44 6777778888899999988888775 677888889999998888877666666678889999
Q ss_pred EeccCCCcee-eeecCCcCCCccEEEEccCCCCCCCc---cccccCCCCcEEEEe
Q 005181 605 LLWDFVAVKS-VIIEKGAMPDIRELEIGPCPLLMEIP---IGIEHLRNLKLLRFD 655 (710)
Q Consensus 605 ~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~l~ 655 (710)
++++|.+.+. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9988887653 33677888899999999988765433 367888888888765
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=6.3e-13 Score=123.24 Aligned_cols=125 Identities=18% Similarity=0.093 Sum_probs=76.2
Q ss_pred cEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCC
Q 005181 532 QRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFV 610 (710)
Q Consensus 532 ~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 610 (710)
+.++++++ +..+|..+ .++|+.|++++|.+++..+..|+.+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 44455444 44555432 2566666666666666555556666667777776666665544445666677777777766
Q ss_pred CceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEecCc
Q 005181 611 AVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFDCMV 658 (710)
Q Consensus 611 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 658 (710)
+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 655544455666777777777776654333345666777777776553
No 145
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=1e-11 Score=130.90 Aligned_cols=296 Identities=14% Similarity=0.110 Sum_probs=169.2
Q ss_pred CCCCCceeecccchhhc---------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccC---cCcEEEEEeCCCCCHHHH
Q 005181 18 NFPHAGFSGKEDNNQLI---------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTH---FNCRAWITVGKEYKKNDL 85 (710)
Q Consensus 18 ~~~~~~~vGre~~~~~i---------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~---f~~~~~v~~~~~~~~~~~ 85 (710)
...++.|+||+.+++.+ ....+.+.|+|++|+||||+|+++++. .... -..++|+.+....+...+
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 34468899999999887 233578999999999999999999886 3222 235678887665566666
Q ss_pred HHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhc--CCceEEEEecCCCc------chHHHHHHhcCC-CCCCcEEE
Q 005181 86 LRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLK--DKSYMVVFDDVWKI------DFWGDVEYALLD-SKKCGRII 156 (710)
Q Consensus 86 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~LlvlDdv~~~------~~~~~~~~~l~~-~~~~~~il 156 (710)
+..++..++... + ....+..+....+.+.+. +++.+||+|+++.. +.+..+...+.. ...+..+|
T Consensus 94 ~~~i~~~l~~~~----~--~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I 167 (386)
T 2qby_A 94 LADLLESLDVKV----P--FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFI 167 (386)
T ss_dssp HHHHTTTTSCCC----C--SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEE
T ss_pred HHHHHHHhCCCC----C--CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEE
Confidence 666666553221 1 112233455556666554 35899999999763 233333333321 22344667
Q ss_pred EEcCchhhhhhcc----CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhC---CCchHH-HH
Q 005181 157 VTTRHMNVAKYCK----SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCG---GLPLAI-VA 228 (710)
Q Consensus 157 vTtR~~~~~~~~~----~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal-~~ 228 (710)
+||+......... ..-....+.+++++.++..+++...+........ -..+..+.+++.++ |.|..+ .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~G~~r~~~~l 244 (386)
T 2qby_A 168 GITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGV---LPDNVIKLCAALAAREHGDARRALDL 244 (386)
T ss_dssp EEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSC---SCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred EEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCC---CCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7777654322211 1111147999999999999999986531100111 12355666777776 998743 33
Q ss_pred HHhhhc-----C-CCCCHHHHHHHHHhhccccCCCcchhhHHHHHHhcccCCchhHHHHHhhhcCCCC-C-cccchhHHH
Q 005181 229 VGGLLS-----T-KNMVVSEWKKLFDRMGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLYFGLFPE-S-CKVNCARLI 300 (710)
Q Consensus 229 ~~~~l~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~la~f~~-~-~~~~~~~l~ 300 (710)
+..... + ...+.+.++.++.... ...+...+..++...+..+..++.+.+ + ..+...++.
T Consensus 245 l~~a~~~a~~~~~~~i~~~~v~~a~~~~~------------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~ 312 (386)
T 2qby_A 245 LRVSGEIAERMKDTKVKEEYVYMAKEEIE------------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVY 312 (386)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHH------------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHH
T ss_pred HHHHHHHHHhcCCCccCHHHHHHHHHHHh------------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHH
Confidence 322221 1 1234455555544431 234556677888888888887774322 1 123333332
Q ss_pred HHH--HHCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeeec
Q 005181 301 RLW--IAEGFVPYCKRPTSEQVAEECLNELIDRSLVQVSER 339 (710)
Q Consensus 301 ~~w--~~~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~ 339 (710)
..+ +++... ........+..+++.|.+.+++.....
T Consensus 313 ~~~~~~~~~~g---~~~~~~~~~~~~l~~L~~~gli~~~~~ 350 (386)
T 2qby_A 313 ETYLNICKKLG---VEAVTQRRVSDIINELDMVGILTAKVV 350 (386)
T ss_dssp HHHHHHHHHHT---CCCCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHhcC---CCCCCHHHHHHHHHHHHhCCCEEEEee
Confidence 211 121100 011123457788999999999987643
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=2.8e-14 Score=135.03 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=62.2
Q ss_pred cCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhh
Q 005181 442 YLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVA 521 (710)
Q Consensus 442 ~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~ 521 (710)
.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+|..+..+++|++|++++ |.+++..
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~------- 109 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS------- 109 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-EECCCHH-------
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-CcCCcCC-------
Confidence 33346666667777777777666666 66666777777777666666666566666666666663 3433211
Q ss_pred hccCCCCcCccEEEEeec-CCCCCc--cccCCCCccEEEEEeeccCC
Q 005181 522 KSLSSPPQYLQRLYLMGN-MKKLPD--WIFKLENLIRLGLELSGLAE 565 (710)
Q Consensus 522 ~~l~~~~~~L~~L~L~~n-~~~ip~--~~~~l~~L~~L~L~~n~l~~ 565 (710)
.+ ...++|+.|++++| +..++. .+..+++|+.|++++|.+++
T Consensus 110 -~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 110 -GI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp -HH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred -cc-ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 00 01124444444444 333332 34555555555555555544
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=1.9e-12 Score=119.93 Aligned_cols=65 Identities=25% Similarity=0.088 Sum_probs=31.8
Q ss_pred ccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCC
Q 005181 547 IFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVA 611 (710)
Q Consensus 547 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~ 611 (710)
+..+++|+.|++++|.+++.++..|..+++|+.|++++|.+....+..+..+++|+.|++++|++
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 34555555555555555554444445555555555555544443332233444444444444443
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=2.2e-14 Score=135.82 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=83.6
Q ss_pred ccccCcchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeecCCC
Q 005181 463 VKIIPKSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKK 542 (710)
Q Consensus 463 i~~lp~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ 542 (710)
++.+|..+..+++|++|++++|.+..+| .+.++++|++|++++ |.+ ..
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~-n~l------------------------------~~ 84 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR-NLI------------------------------KK 84 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEE-EEE------------------------------CS
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCC-CCc------------------------------cc
Confidence 3445557778888888888888777777 677777777777763 332 23
Q ss_pred CCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeE-EecCCCCcccEEEeccCCCceeeeec---
Q 005181 543 LPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFH-FEAGWFPKLQKLLLWDFVAVKSVIIE--- 618 (710)
Q Consensus 543 ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~--- 618 (710)
+|..+..+++|+.|++++|.+++. + .+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+.+|..
T Consensus 85 l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 162 (198)
T 1ds9_A 85 IENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162 (198)
T ss_dssp CSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred ccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccch
Confidence 444555567777777777777663 2 56677777777777776655322 24556666666666666554443321
Q ss_pred -------CCcCCCccEEE
Q 005181 619 -------KGAMPDIRELE 629 (710)
Q Consensus 619 -------~~~l~~L~~L~ 629 (710)
+..+++|+.|+
T Consensus 163 ~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 163 SEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHHhCCCcEEEC
Confidence 44555566554
No 149
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=3.1e-13 Score=125.13 Aligned_cols=126 Identities=13% Similarity=0.061 Sum_probs=83.7
Q ss_pred CccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEecc
Q 005181 530 YLQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWD 608 (710)
Q Consensus 530 ~L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~ 608 (710)
+|+.|++++| +..+|......++|+.|++++|.+++. ..|+.+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 4555555555 444444333334777777777777664 5677777777777777777665444446777788888877
Q ss_pred CCCceeeee--cCCcCCCccEEEEccCCCCCCCccc----cccCCCCcEEEEecCcH
Q 005181 609 FVAVKSVII--EKGAMPDIRELEIGPCPLLMEIPIG----IEHLRNLKLLRFDCMVK 659 (710)
Q Consensus 609 n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~~~~ 659 (710)
|.+. .+|. .+..+++|+.|++++|++. .+|.. +..+++|+.|++++|..
T Consensus 98 N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 98 NSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7753 3443 5667788888888888765 45553 77788888888887754
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.21 E-value=4.6e-11 Score=117.12 Aligned_cols=194 Identities=12% Similarity=0.066 Sum_probs=111.2
Q ss_pred CCceeecccchhhc------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
..+++||+.+++.+ ....+.+.|+|++|+||||+|+++++... ..+.. ....+... .....+.....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~--~~~~~-~~~~~~~~----~~~~~~~~~~~ 94 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN--CETGI-TATPCGVC----DNCREIEQGRF 94 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH--CTTCS-CSSCCSCS----HHHHHHHTTCC
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc--CCCCC-CCCCCccc----HHHHHHhccCC
Confidence 45799999998887 23346899999999999999999987632 11110 00000000 00000000000
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHh-----cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCchh-hhh
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDHL-----KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHMN-VAK 166 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~~-~~~ 166 (710)
....... .........+ ..+.+.+ .+++.++|+||++... .+..+...+.....+..+|+||+... +..
T Consensus 95 ~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 95 VDLIEID--AASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp SSEEEEE--TTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cceEEec--CcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 0000000 0000011112 2222222 3467999999998754 45566666655556778888887643 222
Q ss_pred hccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHh
Q 005181 167 YCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGG 231 (710)
Q Consensus 167 ~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 231 (710)
.... ....+.+++++.+|..+++...+.... ..-.++.++.|++.++|+|..+..+..
T Consensus 172 ~l~~--r~~~i~l~~l~~~e~~~~l~~~~~~~~-----~~~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 172 TILS--RCLQFHLKALDVEQIRHQLEHILNEEH-----IAHEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp HHHT--TSEEEECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHH--HhhhccCCCCCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1111 126899999999999999998874321 111246688999999999988765544
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.18 E-value=1.5e-11 Score=112.83 Aligned_cols=106 Identities=14% Similarity=-0.034 Sum_probs=78.9
Q ss_pred ccEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccC
Q 005181 531 LQRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDF 609 (710)
Q Consensus 531 L~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n 609 (710)
.+.+++++| +..+|..+ .++|+.|+|++|.+++..+..|..+++|+.|+|++|.+....+..+..+++|+.|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456666666 66677654 377888888888888877777888888888888888877766656677888888888888
Q ss_pred CCceeeeecCCcCCCccEEEEccCCCCCC
Q 005181 610 VAVKSVIIEKGAMPDIRELEIGPCPLLME 638 (710)
Q Consensus 610 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 638 (710)
.+.+..+..+..+++|+.|+|++|++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 77665555677788888888888877643
No 152
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.17 E-value=1.2e-10 Score=112.20 Aligned_cols=176 Identities=14% Similarity=0.076 Sum_probs=108.4
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCc-CcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHF-NCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-.+++||+..++.+ ....+.+.|+|++|+|||++|+++++... ...+ ...+.+............ .....+.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 93 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVR-HKIKEFA 93 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHH-HHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHH-HHHHHHh
Confidence 45799999998887 33444599999999999999999987631 1122 234444444332221111 1111111
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCchhh-hhhccCC
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHMNV-AKYCKSS 171 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~~~-~~~~~~~ 171 (710)
... ....+++.++|+||++... ..+.+...+.....+..+|+||+.... ......
T Consensus 94 ~~~---------------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~- 151 (226)
T 2chg_A 94 RTA---------------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS- 151 (226)
T ss_dssp TSC---------------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT-
T ss_pred ccc---------------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH-
Confidence 000 0012568899999998764 344555555555566788888876532 111111
Q ss_pred CCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 172 SSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 172 ~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
....+.+++++.++..+++.+.+.... .. -..+..+.+++.++|+|..+
T Consensus 152 -r~~~i~~~~~~~~~~~~~l~~~~~~~~--~~---~~~~~~~~l~~~~~g~~r~l 200 (226)
T 2chg_A 152 -RCAVFRFKPVPKEAMKKRLLEICEKEG--VK---ITEDGLEALIYISGGDFRKA 200 (226)
T ss_dssp -TSEEEECCCCCHHHHHHHHHHHHHHHT--CC---BCHHHHHHHHHHHTTCHHHH
T ss_pred -hCceeecCCCCHHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHcCCCHHHH
Confidence 125889999999999999988764211 11 12356788889999999865
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=2.5e-11 Score=111.66 Aligned_cols=104 Identities=13% Similarity=-0.021 Sum_probs=77.9
Q ss_pred cEEEEeec-CCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCC
Q 005181 532 QRLYLMGN-MKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFV 610 (710)
Q Consensus 532 ~~L~L~~n-~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 610 (710)
+.+++++| ++.+|..+. ++|+.|+|++|.+++..+..|+.+++|+.|+|++|.+....+..+..+++|+.|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 56667766 677776553 778888888888888777788888888888888888777655556777888888888887
Q ss_pred CceeeeecCCcCCCccEEEEccCCCCC
Q 005181 611 AVKSVIIEKGAMPDIRELEIGPCPLLM 637 (710)
Q Consensus 611 ~~~~~~~~~~~l~~L~~L~l~~n~~~~ 637 (710)
+.+..+..+..+++|+.|+|++|++..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 665544557778888888888887653
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=9.7e-11 Score=107.37 Aligned_cols=105 Identities=12% Similarity=-0.049 Sum_probs=90.1
Q ss_pred CccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEc
Q 005181 552 NLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIG 631 (710)
Q Consensus 552 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 631 (710)
..+.|++++|.++..+ ..+ .++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999998754 433 3789999999999999888888999999999999999887666678899999999999
Q ss_pred cCCCCCCCccccccCCCCcEEEEecCcH
Q 005181 632 PCPLLMEIPIGIEHLRNLKLLRFDCMVK 659 (710)
Q Consensus 632 ~n~~~~~~p~~~~~l~~L~~L~l~~~~~ 659 (710)
+|.+.+..+..+..+++|+.|++++|+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 9998866566799999999999998853
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=1.5e-10 Score=106.37 Aligned_cols=104 Identities=13% Similarity=-0.015 Sum_probs=88.4
Q ss_pred ccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEcc
Q 005181 553 LIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGP 632 (710)
Q Consensus 553 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 632 (710)
-+.+++++|.++..+ ..+. ++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999997754 4443 7999999999999988888889999999999999998776556678999999999999
Q ss_pred CCCCCCCccccccCCCCcEEEEecCcH
Q 005181 633 CPLLMEIPIGIEHLRNLKLLRFDCMVK 659 (710)
Q Consensus 633 n~~~~~~p~~~~~l~~L~~L~l~~~~~ 659 (710)
|.+.+..+..+..+++|+.|++++|+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred CccceeCHHHhccccCCCEEEeCCCCc
Confidence 998855555599999999999998863
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.98 E-value=2.7e-09 Score=112.35 Aligned_cols=265 Identities=10% Similarity=0.045 Sum_probs=121.7
Q ss_pred EEeCCCccccCCceeEEEEEccCccc-ccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC----
Q 005181 369 RVLNGVDLSRCSKTRRIAIQRSIDDG-ALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL---- 443 (710)
Q Consensus 369 ~~~~~~~~~~~~~~r~l~l~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l---- 443 (710)
...+..++..+.+++.+.+...-... ...+..|++|+.+.+.+.- ..+...+|.+|.+|+.+.+..+ +..+
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~l---~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDSV---KMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTTC---CEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred eEhHHHHhhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCCc---eEccchhhcccccchhhcccCc-eeeeccee
Confidence 34566777777888888775432222 1135567778777765331 2344556777777776665433 1111
Q ss_pred -------------------cccccCcccceEEEeccccccccCc-chhcccCCCEEEcCCCcccccc-ccccccccCcEE
Q 005181 444 -------------------PEGVGNLFNLHYLSVKNTEVKIIPK-SIRNLLSLEILDLKNTLVSELP-VEIRNLKKLRYL 502 (710)
Q Consensus 444 -------------------~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L 502 (710)
..+|.++.+|+.+.+..+. ..++. .|.++.+|+.+++..+ +..++ ..+.++..|+.+
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 1234445555555554332 22222 2455555555555443 22222 234445555544
Q ss_pred EccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCc-cccCCCCccEEEEEeeccCCccccccccccccceEE
Q 005181 503 MVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPD-WIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELR 581 (710)
Q Consensus 503 ~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 581 (710)
.+..+.... ........+|+.+.+......+.. .+..+..|+.+.+..+.. ......|..+..|+.+.
T Consensus 214 ~~~~~~~~i----------~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 214 EFPNSLYYL----------GDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVI 282 (394)
T ss_dssp CCCTTCCEE----------CTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEE
T ss_pred ecCCCceEe----------ehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcc-eeeccccccccccceec
Confidence 443211000 011111235555555544333322 345566666666654422 22334444555555544
Q ss_pred eecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEe
Q 005181 582 LTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFD 655 (710)
Q Consensus 582 L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 655 (710)
+..+.+.. ..+..+.+|+.+.+..+ +...-...|.+|++|+.+++..+ +...-...|.+|++|+.+.+.
T Consensus 283 ~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 283 YGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp ECSSEECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred cCceeecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence 44332211 13444555555555433 22222233455555555555432 221222345555555555553
No 157
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=1.3e-09 Score=111.65 Aligned_cols=181 Identities=14% Similarity=0.129 Sum_probs=109.3
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCc-CcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHF-NCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-++++|++..++.+ .+....+.|+|++|+||||+|+.+++... ...+ ..+++++...... ...+.++...+.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 97 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRG-IDVVRNQIKHFA 97 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCS-HHHHHTHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccC-hHHHHHHHHHHH
Confidence 36799999999887 33434499999999999999999987631 1111 1344444333212 111222222211
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHh-cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCchh-hhhhccC
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDHL-KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHMN-VAKYCKS 170 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~~-~~~~~~~ 170 (710)
... ..+ .+++.++|+||++... ..+.+...+.....++.+|+||.... +......
T Consensus 98 ~~~---------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 98 QKK---------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp HBC---------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred hcc---------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh
Confidence 000 011 3458899999998764 34445555544456677888776643 2222221
Q ss_pred CCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch-HHHHHHh
Q 005181 171 SSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL-AIVAVGG 231 (710)
Q Consensus 171 ~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 231 (710)
....+.+++++.++..+++...+... +. .-.++.+..+++.++|.|. |+..+..
T Consensus 157 --r~~~i~~~~~~~~~~~~~l~~~~~~~--~~---~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 157 --QCAILRYSKLSDEDVLKRLLQIIKLE--DV---KYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp --TSEEEECCCCCHHHHHHHHHHHHHHH--TC---CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --hceEEeecCCCHHHHHHHHHHHHHHc--CC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12589999999999999998876321 11 1123667889999999994 4444433
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.93 E-value=1.3e-09 Score=114.95 Aligned_cols=238 Identities=11% Similarity=0.052 Sum_probs=143.6
Q ss_pred cCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccC-cccccCcccceEEEeccccccc-----------
Q 005181 398 SIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYL-PEGVGNLFNLHYLSVKNTEVKI----------- 465 (710)
Q Consensus 398 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l-~~~~~~l~~L~~L~l~~n~i~~----------- 465 (710)
+..|.+|+++.+... ...+...+|.+|++|+.+++..+ ++.+ ..+|.++.+|+.+.+..+ +..
T Consensus 67 F~~c~~L~~i~lp~~---i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST---VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTCTTEEEEECCTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred hhCCCCceEEEeCCC---ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 456788888887532 13455678899999999999765 6666 455777777777666432 111
Q ss_pred -----------cC-cchhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccE
Q 005181 466 -----------IP-KSIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQR 533 (710)
Q Consensus 466 -----------lp-~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~ 533 (710)
+. ..|.++.+|+.+.+.++...--...|.++.+|+.+.+..+ ++... ...+..+..|+.
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~-------~~~F~~~~~L~~ 212 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIR-------DYCFAECILLEN 212 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEEC-------TTTTTTCTTCCB
T ss_pred cccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeC-------chhhccccccce
Confidence 11 1255566666666654432211224556666666665421 11110 122333345666
Q ss_pred EEEeecCCCCCccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCce
Q 005181 534 LYLMGNMKKLPDWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVK 613 (710)
Q Consensus 534 L~L~~n~~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 613 (710)
+.+..+...+...+....+|+.+.+..+ ++......|..+.+|+.+.+..+. .......+..+.+++.+....+.
T Consensus 213 i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~--- 287 (394)
T 4fs7_A 213 MEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI--- 287 (394)
T ss_dssp CCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE---
T ss_pred eecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCcee---
Confidence 6555554344444445567777777432 333445667788888888887553 33444567778888888775542
Q ss_pred eeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEe
Q 005181 614 SVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFD 655 (710)
Q Consensus 614 ~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 655 (710)
.....+..+.+|+.+.+..+ +...-...|.+|++|+.+++.
T Consensus 288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred eccccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 22245778999999999765 333334568899999999986
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.92 E-value=2.2e-11 Score=126.53 Aligned_cols=61 Identities=11% Similarity=0.189 Sum_probs=33.2
Q ss_pred cccccEEecCCCCCccC-----ccccc-CcccceEEEeccccccc--cCcchhcccCCCEEEcCCCccc
Q 005181 427 FKLMKVLDLEDAPVDYL-----PEGVG-NLFNLHYLSVKNTEVKI--IPKSIRNLLSLEILDLKNTLVS 487 (710)
Q Consensus 427 ~~~L~~L~l~~n~~~~l-----~~~~~-~l~~L~~L~l~~n~i~~--lp~~~~~l~~L~~L~l~~n~~~ 487 (710)
+++|+.|+|++|.++.. ...+. ..++|+.|+|++|.++. +..-...+.+|++|+|++|.++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 35566777777776532 12222 22567777777776652 2112334556666666666554
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.85 E-value=2.1e-10 Score=119.11 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=70.0
Q ss_pred CceeEEEeecCCCCCcc--hhhhhhc-ccccccEEecCCCCCcc--CcccccCcccceEEEecccccccc-Ccch-----
Q 005181 402 SKVRSVFLFNVDKLPDS--FMNASIA-NFKLMKVLDLEDAPVDY--LPEGVGNLFNLHYLSVKNTEVKII-PKSI----- 470 (710)
Q Consensus 402 ~~l~~l~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~n~~~~--l~~~~~~l~~L~~L~l~~n~i~~l-p~~~----- 470 (710)
+.++.|.+.++...... .+...+. ..++|++|+|++|.++. +......+++|+.|+|++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45666777666642111 1222333 33789999999998863 222233567899999999998732 1222
Q ss_pred hcccCCCEEEcCCCcccc-----ccccccccccCcEEEcccccccc
Q 005181 471 RNLLSLEILDLKNTLVSE-----LPVEIRNLKKLRYLMVYRYNYTT 511 (710)
Q Consensus 471 ~~l~~L~~L~l~~n~~~~-----~~~~~~~l~~L~~L~l~~~n~~~ 511 (710)
...++|++|+|++|.++. ++..+..+++|++|+|++ |.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT-SSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC-CCCC
Confidence 245789999999888754 444556788888888884 4444
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=2e-09 Score=111.34 Aligned_cols=95 Identities=20% Similarity=0.125 Sum_probs=52.5
Q ss_pred CCCCCccccCCCCccEEEEEe-eccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeec
Q 005181 540 MKKLPDWIFKLENLIRLGLEL-SGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIE 618 (710)
Q Consensus 540 ~~~ip~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 618 (710)
+..+|. +..+++|+.|+|++ |.++..++..|+.+++|+.|+|++|.+.+..+..|..+++|+.|+|++|.+.+..+..
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence 344555 55555666666653 5555555555566666666666666555555545555666666666666554433333
Q ss_pred CCcCCCccEEEEccCCCC
Q 005181 619 KGAMPDIRELEIGPCPLL 636 (710)
Q Consensus 619 ~~~l~~L~~L~l~~n~~~ 636 (710)
+..++ |+.|+|.+|++.
T Consensus 100 ~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 100 VQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TCSCC-CCEEECCSSCCC
T ss_pred cccCC-ceEEEeeCCCcc
Confidence 33333 666666665554
No 162
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.3e-08 Score=101.44 Aligned_cols=167 Identities=11% Similarity=0.043 Sum_probs=101.5
Q ss_pred eeecccchhhc---------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccc---cCc--CcEEEEEeCCCCCHHHHHHHH
Q 005181 24 FSGKEDNNQLI---------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLK---THF--NCRAWITVGKEYKKNDLLRTI 89 (710)
Q Consensus 24 ~vGre~~~~~i---------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~---~~f--~~~~~v~~~~~~~~~~~~~~i 89 (710)
+.|||++++.| .+..+.+.|+|++|+|||++|+.+++..... ... -.++++++..-.+....+..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 88999999988 5677899999999999999999999874211 111 145778888878888999999
Q ss_pred HHHHhhhcCCCCCccccchhHHHHHHHHHHH--hcCCceEEEEecCCCcchHHHHHHhcC--CCCCC-cEEEEEcCchhh
Q 005181 90 LKEFHRVANQPAPVEIHDMEEMELITTLRDH--LKDKSYMVVFDDVWKIDFWGDVEYALL--DSKKC-GRIIVTTRHMNV 164 (710)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~LlvlDdv~~~~~~~~~~~~l~--~~~~~-~~ilvTtR~~~~ 164 (710)
++++.... .. .......+...+... -++++++++||+++....-+.+...+. ....+ ..+|.++...+.
T Consensus 102 ~~~L~g~~---~~---~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 102 WFAISKEN---LC---GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHSCCC--------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHhcCCC---CC---chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 99985431 11 111112222222221 245679999999988742222222221 11222 233444443221
Q ss_pred hh-hc----cCCCCcceEEccCCCchhHHHHHHHHHc
Q 005181 165 AK-YC----KSSSSVHVHELETLPPNEAWKLFCRKAF 196 (710)
Q Consensus 165 ~~-~~----~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 196 (710)
.. .. ........+.++|++.+|..+++.+++.
T Consensus 176 ~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 01 0000114789999999999999998874
No 163
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.78 E-value=8.3e-08 Score=98.05 Aligned_cols=172 Identities=19% Similarity=0.100 Sum_probs=102.8
Q ss_pred CCceeecccchhhc----------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI----------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTIL 90 (710)
Q Consensus 21 ~~~~vGre~~~~~i----------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (710)
-++|+|++..++.+ ....+.+.|+|++|+|||++|+++++. .. ...+++.+.......
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~---~~~~~~~~~~~~~~~------- 78 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LG---VNLRVTSGPAIEKPG------- 78 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HT---CCEEEECTTTCCSHH-------
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEeccccCChH-------
Confidence 46799999887776 134578899999999999999999875 22 123455443322111
Q ss_pred HHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCC------------------
Q 005181 91 KEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSK------------------ 150 (710)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~------------------ 150 (710)
++...+...+ .+..++++|+++... ....+...+....
T Consensus 79 ---------------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 79 ---------------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp ---------------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred ---------------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 1111111111 356789999998864 2233333222110
Q ss_pred CCcEEEEEcCchh-hhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHH
Q 005181 151 KCGRIIVTTRHMN-VAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAV 229 (710)
Q Consensus 151 ~~~~ilvTtR~~~-~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 229 (710)
.+..+|.||.... +..... .....++.+++++.+|..+++...+.... . .-..+..+.++++++|+|..+.-+
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~-~R~~~~i~l~~~~~~e~~~~l~~~~~~~~--~---~~~~~~~~~l~~~~~G~~r~l~~~ 210 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLL-SRFGIVEHLEYYTPEELAQGVMRDARLLG--V---RITEEAALEIGRRSRGTMRVAKRL 210 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTT-TTCSCEEECCCCCHHHHHHHHHHHHHTTT--C---CCCHHHHHHHHHHSCSCHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHH-hcccEEEecCCCCHHHHHHHHHHHHHhcC--C---CCCHHHHHHHHHHccCCHHHHHHH
Confidence 1234555555432 211111 11125899999999999999988874321 1 122467888999999999877555
Q ss_pred Hhh
Q 005181 230 GGL 232 (710)
Q Consensus 230 ~~~ 232 (710)
...
T Consensus 211 l~~ 213 (324)
T 1hqc_A 211 FRR 213 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 164
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=1.3e-08 Score=104.27 Aligned_cols=178 Identities=15% Similarity=0.087 Sum_probs=107.3
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCc-CcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHF-NCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-++++|++..++.+ .+....+.|+|++|+||||+|+.+++... ...+ ..++.+..+... ....+......+.
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 101 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDER-GINVIREKVKEFA 101 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHH-HHHTTHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccC-chHHHHHHHHHHH
Confidence 46799999998887 44444599999999999999999987621 1111 123444332210 0000000111100
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCchh-hhhhccCC
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHMN-VAKYCKSS 171 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~~-~~~~~~~~ 171 (710)
.. .....+++.++|+|+++... ....+...+.....++++|+|+.... +......
T Consensus 102 ~~---------------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s- 159 (327)
T 1iqp_A 102 RT---------------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS- 159 (327)
T ss_dssp HS---------------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH-
T ss_pred hh---------------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh-
Confidence 00 00112567899999998764 44555555555556678888876643 2111111
Q ss_pred CCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHH
Q 005181 172 SSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVA 228 (710)
Q Consensus 172 ~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 228 (710)
....+.+++++.++..+++...+.... ..-.++.++.+++.++|.|..+..
T Consensus 160 -r~~~~~~~~l~~~~~~~~l~~~~~~~~-----~~~~~~~~~~l~~~~~g~~r~~~~ 210 (327)
T 1iqp_A 160 -RCAIFRFRPLRDEDIAKRLRYIAENEG-----LELTEEGLQAILYIAEGDMRRAIN 210 (327)
T ss_dssp -TEEEEECCCCCHHHHHHHHHHHHHTTT-----CEECHHHHHHHHHHHTTCHHHHHH
T ss_pred -hCcEEEecCCCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHCCCCHHHHHH
Confidence 125789999999999999988874321 112346778899999999976533
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.76 E-value=4.8e-09 Score=108.48 Aligned_cols=102 Identities=16% Similarity=-0.019 Sum_probs=86.8
Q ss_pred cEEEEEee-ccCCccccccccccccceEEeec-ccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEc
Q 005181 554 IRLGLELS-GLAEEPIRVLQASPNLLELRLTG-TYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIG 631 (710)
Q Consensus 554 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 631 (710)
..++++++ .++.. |. +..+++|+.|+|++ |.+....+..|..+++|+.|+|++|.+.+..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677787 78774 55 99999999999996 99988877789999999999999999888888889999999999999
Q ss_pred cCCCCCCCccccccCCCCcEEEEecCc
Q 005181 632 PCPLLMEIPIGIEHLRNLKLLRFDCMV 658 (710)
Q Consensus 632 ~n~~~~~~p~~~~~l~~L~~L~l~~~~ 658 (710)
+|++.+..+..+..++ |+.|+|.+|+
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCC
Confidence 9998754444555555 9999999885
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.73 E-value=3.1e-08 Score=104.21 Aligned_cols=99 Identities=12% Similarity=0.089 Sum_probs=72.1
Q ss_pred ceeEEEeecCCCCCcchhhhhhcccccccEEecCCCC---CccC-cccccCcccceEEEeccccccccCcc-hhcccCCC
Q 005181 403 KVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAP---VDYL-PEGVGNLFNLHYLSVKNTEVKIIPKS-IRNLLSLE 477 (710)
Q Consensus 403 ~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~---~~~l-~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~ 477 (710)
.|+++.+.+.- ..+...+|.+|.+|+.+.+..|. ++.+ ..+|.++.+|+.+.+..+ ++.++.. |..+.+|+
T Consensus 65 ~L~sI~iP~sv---t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPDTV---TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECTTC---CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred cCEEEEECCCe---eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence 48888876432 35566789999999999998764 6666 456888889988877654 5555544 88899999
Q ss_pred EEEcCCCccccccccccccccCcEEEcc
Q 005181 478 ILDLKNTLVSELPVEIRNLKKLRYLMVY 505 (710)
Q Consensus 478 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~ 505 (710)
.+.+..+...--...|..+.+|+.+.+.
T Consensus 141 ~i~lp~~~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 141 TVTIPEGVTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccceeeeecccceeccccccccccc
Confidence 9999755332223467888999999886
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.69 E-value=1.7e-07 Score=98.48 Aligned_cols=285 Identities=8% Similarity=0.015 Sum_probs=171.2
Q ss_pred EEEeCCCccccCC-ceeEEEEEccCccc-ccccCCCCceeEEEeecCC-CCCcchhhhhhcccccccEEecCCCCCccC-
Q 005181 368 GRVLNGVDLSRCS-KTRRIAIQRSIDDG-ALESIKDSKVRSVFLFNVD-KLPDSFMNASIANFKLMKVLDLEDAPVDYL- 443 (710)
Q Consensus 368 ~~~~~~~~~~~~~-~~r~l~l~~~~~~~-~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l- 443 (710)
....+..++..+. .++.+.+-..-... ...+..|.+|+.+.+..+. .....+...+|..|.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eeEcCHhhccCCCCcCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 3455667777664 58888886543322 2246678899999886542 1123445567888888888777654 4555
Q ss_pred cccccCcccceEEEeccccccccCc-chhcccCCCEEEcCCCccccccccccccccCcEEEccccccccCccCCch----
Q 005181 444 PEGVGNLFNLHYLSVKNTEVKIIPK-SIRNLLSLEILDLKNTLVSELPVEIRNLKKLRYLMVYRYNYTTGSIMPAE---- 518 (710)
Q Consensus 444 ~~~~~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~n~~~~~~~~~~---- 518 (710)
...|.++.+|+.+.+..+ +..+++ .|..+.+|+.+.+..+ +..+........+|+.+.+..+...-+...-..
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l 207 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFAL 207 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTC
T ss_pred hhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhcccc
Confidence 355677888888888643 333333 3777777877777644 333333222234555555532110000000000
Q ss_pred ---------------hhhh---------ccCCCCcCccEEEEeecCCCC-CccccCCCCccEEEEEeeccCCcccccccc
Q 005181 519 ---------------AVAK---------SLSSPPQYLQRLYLMGNMKKL-PDWIFKLENLIRLGLELSGLAEEPIRVLQA 573 (710)
Q Consensus 519 ---------------~~~~---------~l~~~~~~L~~L~L~~n~~~i-p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 573 (710)
.... ........+..+.+......+ ...|.+++.|+.+.+..+. .......|.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~ 286 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMN 286 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTT
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCccccc
Confidence 0000 000001122333333322222 2357788999999886543 3445678889
Q ss_pred ccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEE
Q 005181 574 SPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLR 653 (710)
Q Consensus 574 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 653 (710)
+++|+.+.+. +.+..+....|.+|.+|+.+.|..+ +...-...|.+|.+|+.+.+..+ +...-...|.+|++|+.++
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 9999999996 4455555567889999999999765 34434467889999999999755 4433346799999999999
Q ss_pred EecCcH
Q 005181 654 FDCMVK 659 (710)
Q Consensus 654 l~~~~~ 659 (710)
+.++..
T Consensus 364 ~~~~~~ 369 (394)
T 4gt6_A 364 YSGSRS 369 (394)
T ss_dssp ESSCHH
T ss_pred ECCcee
Confidence 987644
No 168
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.67 E-value=6.1e-08 Score=101.24 Aligned_cols=195 Identities=12% Similarity=0.064 Sum_probs=106.7
Q ss_pred CCceeecccchhhc------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-++++||+..++.+ ....+.+.|+|++|+||||+|+.+++......... ...+ ........+.....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~----~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---ATPC----GVCDNCREIEQGRF 87 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SSCC----SSSHHHHHHHTSCC
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCC----cccHHHHHHhccCC
Confidence 35699999998887 33346789999999999999999987632111110 0001 11111111110000
Q ss_pred hhc-CCCCCccccchhHHHHHHHHHHH-hcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhhcc
Q 005181 95 RVA-NQPAPVEIHDMEEMELITTLRDH-LKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKYCK 169 (710)
Q Consensus 95 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~~~ 169 (710)
... ...........+..++.+.+... ..+++.++|+||++... ....+...+.....+..+|++|... .+.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 000 00000000001111222221111 13467899999998764 4555666665555566677666543 2222222
Q ss_pred CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHH
Q 005181 170 SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAV 229 (710)
Q Consensus 170 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 229 (710)
. ....+++++++.++..+++...+... +. .-..+.+..+++.++|.|..+..+
T Consensus 168 s--r~~~i~~~~l~~~~~~~~l~~~~~~~--~~---~~~~~a~~~l~~~~~G~~r~~~~~ 220 (373)
T 1jr3_A 168 S--RCLQFHLKALDVEQIRHQLEHILNEE--HI---AHEPRALQLLARAAEGSLRDALSL 220 (373)
T ss_dssp T--TSEEEECCCCCHHHHHHHHHHHHHHH--TC---CBCHHHHHHHHHHSSSCHHHHHHH
T ss_pred h--heeEeeCCCCCHHHHHHHHHHHHHHc--CC---CCCHHHHHHHHHHCCCCHHHHHHH
Confidence 2 12689999999999999998776321 00 112456788999999999876443
No 169
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=8.3e-09 Score=106.13 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=29.6
Q ss_pred CCCcccEEEeccCCCceeeeec---CCcCCCccEEEEccCCCCCC----CccccccCCCCcEEEEecC
Q 005181 597 WFPKLQKLLLWDFVAVKSVIIE---KGAMPDIRELEIGPCPLLME----IPIGIEHLRNLKLLRFDCM 657 (710)
Q Consensus 597 ~~~~L~~L~L~~n~~~~~~~~~---~~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~~ 657 (710)
.+|+|+.|+|.+|.+....+.. ...+|+|+.|+|+.|.+... ++..+.++++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 3556666666555543221111 12355666666665554431 2333344556666666544
No 170
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.59 E-value=1.2e-07 Score=96.52 Aligned_cols=173 Identities=12% Similarity=0.081 Sum_probs=105.5
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCc-CcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHF-NCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-++++|++..++.+ .+....+.|+|++|+|||++|+.+++... ...+ ..++.++.+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~----------- 83 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID----------- 83 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT-----------
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH-----------
Confidence 35699999998887 33333489999999999999999987621 1111 123444443321100
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHH--h-cCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCchh-hhhhc
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDH--L-KDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHMN-VAKYC 168 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~--l-~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~~-~~~~~ 168 (710)
.. .+........ + .+++.++|+|+++... ..+.+...+.....++.+|+||.... +....
T Consensus 84 ---------~~-----~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 84 ---------VV-----RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp ---------TS-----SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred ---------HH-----HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 00 0111111111 1 2567899999998764 33445555555556667777776543 22222
Q ss_pred cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 169 KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 169 ~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
.. ....+.+.+++.++..+++...+.... ..-.++.++.+++.++|.+..+
T Consensus 150 ~s--r~~~i~~~~~~~~~~~~~l~~~~~~~~-----~~i~~~~l~~l~~~~~G~~r~~ 200 (319)
T 2chq_A 150 QS--RCAVFRFKPVPKEAMKKRLLEICEKEG-----VKITEDGLEALIYISGGDFRKA 200 (319)
T ss_dssp HT--TCEEEECCCCCHHHHHHHHHHHHHTTC-----CCBCHHHHHHHHHTTTTCHHHH
T ss_pred Hh--hCeEEEecCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHcCCCHHHH
Confidence 22 125899999999999999988874321 1123466788889999998754
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.56 E-value=6.9e-08 Score=93.96 Aligned_cols=165 Identities=12% Similarity=0.056 Sum_probs=95.7
Q ss_pred CCceeecc---cchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHH
Q 005181 21 HAGFSGKE---DNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKE 92 (710)
Q Consensus 21 ~~~~vGre---~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (710)
-++|+|++ ..++.+ .+..+.+.|+|++|+||||+|+++++.. ......++|+.+......
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~--~~~~~~~~~~~~~~~~~~---------- 94 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA--NELERRSFYIPLGIHASI---------- 94 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEGGGGGGS----------
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHHHHH----------
Confidence 35688743 333334 3367889999999999999999998873 333345677765432110
Q ss_pred HhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--h--HHHHHHhcCCC-CCCc-EEEEEcCchh---
Q 005181 93 FHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--F--WGDVEYALLDS-KKCG-RIIVTTRHMN--- 163 (710)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~--~~~~~~~l~~~-~~~~-~ilvTtR~~~--- 163 (710)
+. . ..+.+ .++.++|+||++... . .+.+...+... ..+. ++|+||+...
T Consensus 95 ~~-----------------~----~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 95 ST-----------------A----LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp CG-----------------G----GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HH-----------------H----HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 00 0 00011 345789999997653 1 23333332211 1122 4777766422
Q ss_pred ------hhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHH
Q 005181 164 ------VAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIV 227 (710)
Q Consensus 164 ------~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 227 (710)
+...+... ..+.+++++.++..+++...+... +. .-..+..+.+++.++|.+-.+.
T Consensus 153 ~~~~~~l~~r~~~~---~~i~l~~~~~~~~~~~l~~~~~~~--~~---~~~~~~~~~l~~~~~g~~r~l~ 214 (242)
T 3bos_A 153 GFVLPDLVSRMHWG---LTYQLQPMMDDEKLAALQRRAAMR--GL---QLPEDVGRFLLNRMARDLRTLF 214 (242)
T ss_dssp TCCCHHHHHHHHHS---EEEECCCCCGGGHHHHHHHHHHHT--TC---CCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHhhhhhhhHhhcC---ceEEeCCCCHHHHHHHHHHHHHHc--CC---CCCHHHHHHHHHHccCCHHHHH
Confidence 11111111 578999999999999999887422 11 1124667788889999876653
No 172
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.54 E-value=2.5e-06 Score=87.46 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=98.2
Q ss_pred CCCceeecccchhhc----------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHH
Q 005181 20 PHAGFSGKEDNNQLI----------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTI 89 (710)
Q Consensus 20 ~~~~~vGre~~~~~i----------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 89 (710)
.-++++|++..++.+ ......|.|+|++|+|||++|+++++. ... ..+.+.+......
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~---~~~~~~~~~~~~~------- 94 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSA---NIKTTAAPMIEKS------- 94 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTC---CEEEEEGGGCCSH-------
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCC---CeEEecchhccch-------
Confidence 346799999988776 233467899999999999999999776 222 2344443322110
Q ss_pred HHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCC-----------------
Q 005181 90 LKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSK----------------- 150 (710)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~----------------- 150 (710)
......+.. ..+..+|++|+++... ....+...+....
T Consensus 95 ---------------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 95 ---------------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp ---------------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred ---------------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecC
Confidence 011111111 2456789999998764 2233333332211
Q ss_pred -CCcEEEEEcCc-hhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHH
Q 005181 151 -KCGRIIVTTRH-MNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIV 227 (710)
Q Consensus 151 -~~~~ilvTtR~-~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 227 (710)
++..+|.+|.. ..+...... .....+.+++++.++...++...+.... ..-..+..+.+++.+.|+|-.+.
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~-R~~~~i~l~~~~~~e~~~il~~~~~~~~-----~~~~~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRD-RFGMQFRLEFYKDSELALILQKAALKLN-----KTCEEKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHT-TCSEEEECCCCCHHHHHHHHHHHHHHTT-----CEECHHHHHHHHHTTTTCHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHh-hcCEEeeCCCcCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHCcCHHHHH
Confidence 12345554443 222211111 1226899999999999999988874321 11234667888889999985543
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.54 E-value=2.5e-07 Score=98.05 Aligned_cols=182 Identities=14% Similarity=0.092 Sum_probs=105.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCc--CcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHF--NCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
...+.|+|++|+||||||+.+++. ....+ ..++++++. .+..++...+... . ..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~------------~----~~ 185 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG------------K----LN 185 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT------------C----HH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc------------c----HH
Confidence 678999999999999999999887 32222 245666543 2333443333211 0 12
Q ss_pred HHHHHhcCCceEEEEecCCCcc----hHHHHHHhcCC-CCCCcEEEEEcCchh---------hhhhccCCCCcceEEccC
Q 005181 116 TLRDHLKDKSYMVVFDDVWKID----FWGDVEYALLD-SKKCGRIIVTTRHMN---------VAKYCKSSSSVHVHELET 181 (710)
Q Consensus 116 ~~~~~l~~~~~LlvlDdv~~~~----~~~~~~~~l~~-~~~~~~ilvTtR~~~---------~~~~~~~~~~~~~~~l~~ 181 (710)
.+...++.+.-+|++||++... ..+.+...+.. ...|..||+||.... +...+... .++.+++
T Consensus 186 ~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g---~~i~l~~ 262 (440)
T 2z4s_A 186 EFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG---LVAKLEP 262 (440)
T ss_dssp HHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSS---BCCBCCC
T ss_pred HHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCC---eEEEeCC
Confidence 2334444366799999997643 22233333221 234567888887531 22212211 5789999
Q ss_pred CCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHHHHHh------hhcCCCCCHHHHHHHHHhhc
Q 005181 182 LPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIVAVGG------LLSTKNMVVSEWKKLFDRMG 251 (710)
Q Consensus 182 l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~------~l~~~~~~~~~~~~~~~~~~ 251 (710)
++.++..+++.+.+... +... ..+.+..|++.+.|.+-.+.-+.. ...++..+.+.++.++....
T Consensus 263 p~~e~r~~iL~~~~~~~--~~~i---~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 263 PDEETRKSIARKMLEIE--HGEL---PEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp CCHHHHHHHHHHHHHHH--TCCC---CTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred CCHHHHHHHHHHHHHHc--CCCC---CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 99999999998887421 1111 124577888899998865432211 12233356666666665543
No 174
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.54 E-value=3.3e-08 Score=92.51 Aligned_cols=42 Identities=17% Similarity=0.346 Sum_probs=36.0
Q ss_pred CCCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 20 PHAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 20 ~~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.-+.++||+++++.+ ....+.+.|+|++|+|||++|+++++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 456799999999887 445678899999999999999999876
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.52 E-value=4.3e-07 Score=90.76 Aligned_cols=174 Identities=13% Similarity=0.064 Sum_probs=98.5
Q ss_pred CCCceeecccchhhc-----c-------------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC
Q 005181 20 PHAGFSGKEDNNQLI-----Q-------------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK 81 (710)
Q Consensus 20 ~~~~~vGre~~~~~i-----~-------------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (710)
.-++++|.+...+.+ . ...+.+.|+|++|+|||++|+++++. ... ..+.+....-..
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~---~~~~v~~~~~~~ 89 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNA---TFIRVVGSELVK 89 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCC---CEEEEehHHHHH
Confidence 356799999888776 1 45678999999999999999999876 222 233333321110
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCc-----------c-----hHHHHHHh
Q 005181 82 KNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKI-----------D-----FWGDVEYA 145 (710)
Q Consensus 82 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~-----------~-----~~~~~~~~ 145 (710)
. ........+...+.......+.+|++|+++.. . .+..+...
T Consensus 90 ~----------------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~ 147 (285)
T 3h4m_A 90 K----------------------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAE 147 (285)
T ss_dssp C----------------------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHH
T ss_pred h----------------------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHH
Confidence 0 00011112222233333456789999999653 1 12222222
Q ss_pred cC--CCCCCcEEEEEcCchhhhhhc--cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCC
Q 005181 146 LL--DSKKCGRIIVTTRHMNVAKYC--KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGG 221 (710)
Q Consensus 146 l~--~~~~~~~ilvTtR~~~~~~~~--~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 221 (710)
+. ....+..||.||......... ........+.+++.+.++..+++.......... .......+++.+.|
T Consensus 148 ~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~------~~~~~~~l~~~~~g 221 (285)
T 3h4m_A 148 MDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA------EDVNLEEIAKMTEG 221 (285)
T ss_dssp HHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC------TTCCHHHHHHHCTT
T ss_pred hhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC------CcCCHHHHHHHcCC
Confidence 22 223345677788755332211 111223578999999999999999887432111 11225667777777
Q ss_pred C-chHH
Q 005181 222 L-PLAI 226 (710)
Q Consensus 222 ~-Plal 226 (710)
. |-.+
T Consensus 222 ~~~~~i 227 (285)
T 3h4m_A 222 CVGAEL 227 (285)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 4 4343
No 176
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.52 E-value=6.8e-07 Score=93.42 Aligned_cols=126 Identities=9% Similarity=0.049 Sum_probs=81.0
Q ss_pred CCcCccEEEEeecCCCCC-ccccCCCCccEEEEEeeccCCccccccccccccceEEeecccCCceeEEecCCCCcccEEE
Q 005181 527 PPQYLQRLYLMGNMKKLP-DWIFKLENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLL 605 (710)
Q Consensus 527 ~~~~L~~L~L~~n~~~ip-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 605 (710)
...+|+.+.+..++..+. ..+.++..|+.+.+..+ ++......|..+.+|+.+.+..+ +.......|.++++|+.+.
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp TCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred cccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 344667777666654443 34567777888777554 44555567777778888877543 3343444567778888888
Q ss_pred eccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCCcEEEEe
Q 005181 606 LWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNLKLLRFD 655 (710)
Q Consensus 606 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 655 (710)
+.++.+...-...|.+|.+|+.+.|..+ +...-...|.+|++|+.+.+.
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 8766555444566777888888887644 332223467778888877774
No 177
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.50 E-value=1.4e-06 Score=90.66 Aligned_cols=195 Identities=13% Similarity=0.055 Sum_probs=102.6
Q ss_pred CCceeecccchhhc--------cC--CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeC----CCCCHHHHH
Q 005181 21 HAGFSGKEDNNQLI--------QS--ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVG----KEYKKNDLL 86 (710)
Q Consensus 21 ~~~~vGre~~~~~i--------~~--~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~----~~~~~~~~~ 86 (710)
-++|+|++...+.+ .+ ..+.+.|+|++|+|||++|+++++.. .... ..+.+... ......+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l--~~~~-~~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL--GPDT-PFTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH--CSSC-CEEEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh--cccC-CcccccchhhhhcccchhHHH
Confidence 56899999886653 22 23689999999999999999998873 2211 12233321 222333444
Q ss_pred HHHHHHHhhhc------------------CCC-----CCcccc---chhHHHHHHHHHHHh--cCC----ceEEEEecCC
Q 005181 87 RTILKEFHRVA------------------NQP-----APVEIH---DMEEMELITTLRDHL--KDK----SYMVVFDDVW 134 (710)
Q Consensus 87 ~~i~~~l~~~~------------------~~~-----~~~~~~---~~~~~~~~~~~~~~l--~~~----~~LlvlDdv~ 134 (710)
.+.+....... ... ...... ..+............ .++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 44443321100 000 000000 011111222222111 123 3599999998
Q ss_pred Ccc--hHHHHHHhcCCCCCCcEEEEEcC-c-----------h-hhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCC
Q 005181 135 KID--FWGDVEYALLDSKKCGRIIVTTR-H-----------M-NVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPS 199 (710)
Q Consensus 135 ~~~--~~~~~~~~l~~~~~~~~ilvTtR-~-----------~-~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 199 (710)
... ....+...+...... .++++|. . . .+..... .+...+.+++++.++..+++...+....
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~--sR~~~i~~~~~~~~e~~~il~~~~~~~~ 276 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLL--DRLLIVSTTPYSEKDTKQILRIRCEEED 276 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHH--TTEEEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHH--hhccEEEecCCCHHHHHHHHHHHHHHcC
Confidence 874 344455555444333 3444442 1 1 1111111 1225689999999999999998764321
Q ss_pred CCCCCchhHHHHHHHHHHHhC-CCchHH
Q 005181 200 SGGSCPSELRELSRDILAKCG-GLPLAI 226 (710)
Q Consensus 200 ~~~~~~~~~~~~~~~i~~~~~-g~Plal 226 (710)
..-..+..+.+++.+. |.|-.+
T Consensus 277 -----~~~~~~~l~~l~~~~~~G~~r~~ 299 (368)
T 3uk6_A 277 -----VEMSEDAYTVLTRIGLETSLRYA 299 (368)
T ss_dssp -----CCBCHHHHHHHHHHHHHSCHHHH
T ss_pred -----CCCCHHHHHHHHHHhcCCCHHHH
Confidence 1123456788888887 777544
No 178
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=4.8e-08 Score=100.47 Aligned_cols=165 Identities=15% Similarity=0.062 Sum_probs=83.6
Q ss_pred hhcccccccEEecCCCCCc----------cCcccccCcccceEEEeccccccccCcchhcccCCCEEEcCCCccccc-cc
Q 005181 423 SIANFKLMKVLDLEDAPVD----------YLPEGVGNLFNLHYLSVKNTEVKIIPKSIRNLLSLEILDLKNTLVSEL-PV 491 (710)
Q Consensus 423 ~~~~~~~L~~L~l~~n~~~----------~l~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~-~~ 491 (710)
+..++++|+.|.+.++... .+...+..+|+|+.|++++|.-..++. + .+++|++|+|..|.+..- ..
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 4556677777777654321 233334566777777777663223333 3 266777777765544221 11
Q ss_pred ccc--ccccCcEEEcccc-ccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCccc--cCCCCccEEEEEeeccCCc
Q 005181 492 EIR--NLKKLRYLMVYRY-NYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPDWI--FKLENLIRLGLELSGLAEE 566 (710)
Q Consensus 492 ~~~--~l~~L~~L~l~~~-n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~~~--~~l~~L~~L~L~~n~l~~~ 566 (710)
.+. .+++|++|+|+.+ +...+.. . ...+...+ ..+++|+.|+|++|.++..
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~-~-----------------------~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~ 267 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDG-D-----------------------MNVFRPLFSKDRFPNLKWLGIVDAEEQNV 267 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCS-C-----------------------GGGTGGGSCTTTCTTCCEEEEESCTTHHH
T ss_pred HHHHccCCCCcEEEEeccccccccch-h-----------------------HHHHHHHHhcCCCCCcCEEeCCCCCCchH
Confidence 222 5677777776521 1111000 0 00000011 2466777777777666532
Q ss_pred ccccc---ccccccceEEeecccCCcee----EEecCCCCcccEEEeccCCCce
Q 005181 567 PIRVL---QASPNLLELRLTGTYDYELF----HFEAGWFPKLQKLLLWDFVAVK 613 (710)
Q Consensus 567 ~~~~l---~~l~~L~~L~L~~n~~~~~~----~~~~~~~~~L~~L~L~~n~~~~ 613 (710)
.+..+ ..+++|+.|+|+.|.+.... ...+..+++|+.|+|++|.+..
T Consensus 268 ~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 268 VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 22222 24667777777777665421 1111345677777777776543
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.48 E-value=3.2e-06 Score=83.20 Aligned_cols=173 Identities=9% Similarity=0.056 Sum_probs=94.8
Q ss_pred CCceeecccchhhc-----------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 21 HAGFSGKEDNNQLI-----------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
=++++|.+...+.+ ....+.+.|+|++|+|||++|+++++. ... ..+.+.+..-...
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~---~~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQV---PFLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTC---CEEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEechHHHHhh-
Confidence 35678887776655 134567899999999999999999876 222 2344554432110
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-----------------hHHHHHHhc
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-----------------FWGDVEYAL 146 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-----------------~~~~~~~~l 146 (710)
........+...+.......+.+|++|+++... .+..+...+
T Consensus 79 ---------------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~ 137 (262)
T 2qz4_A 79 ---------------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEM 137 (262)
T ss_dssp ---------------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHH
T ss_pred ---------------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHh
Confidence 000111122223333334567899999998641 122333333
Q ss_pred CC--CCCCcEEEEEcCchhhhh-hcc-CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC
Q 005181 147 LD--SKKCGRIIVTTRHMNVAK-YCK-SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL 222 (710)
Q Consensus 147 ~~--~~~~~~ilvTtR~~~~~~-~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 222 (710)
.. ...+..+|.||....... ... .......+.+++.+.++-.+++...+.... ...........+++.+.|+
T Consensus 138 ~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~----~~~~~~~~~~~l~~~~~g~ 213 (262)
T 2qz4_A 138 DGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK----LTQSSTFYSQRLAELTPGF 213 (262)
T ss_dssp HTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT----CCBTHHHHHHHHHHTCTTC
T ss_pred hCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC----CCcchhhHHHHHHHHCCCC
Confidence 22 123445566665543221 111 112236788999999999999988764321 1111222357788888887
Q ss_pred ch
Q 005181 223 PL 224 (710)
Q Consensus 223 Pl 224 (710)
+-
T Consensus 214 ~~ 215 (262)
T 2qz4_A 214 SG 215 (262)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 180
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.46 E-value=7.9e-07 Score=93.98 Aligned_cols=172 Identities=17% Similarity=0.133 Sum_probs=97.9
Q ss_pred CCceeecccchh---hc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQ---LI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKE 92 (710)
Q Consensus 21 ~~~~vGre~~~~---~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (710)
-++++|.+..+. .+ .+....+.|+|++|+||||+|+.+++. ....| +.+.... .....+++++
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f---~~l~a~~--~~~~~ir~~~-- 95 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY--ANADV---ERISAVT--SGVKEIREAI-- 95 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHH--TTCEE---EEEETTT--CCHHHHHHHH--
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEEecc--CCHHHHHHHH--
Confidence 356899887773 33 555578999999999999999999876 22222 2222221 1111111111
Q ss_pred HhhhcCCCCCccccchhHHHHHHHHH-HHhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCchh--hhhh
Q 005181 93 FHRVANQPAPVEIHDMEEMELITTLR-DHLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHMN--VAKY 167 (710)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~~--~~~~ 167 (710)
.... ....+++.+|++|+++... ..+.+...+.. +...-|..||.+.. +...
T Consensus 96 ----------------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 96 ----------------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp ----------------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHH
T ss_pred ----------------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHH
Confidence 1111 1124678899999998764 22333333333 22222333665543 1111
Q ss_pred ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCC--CCCchhHHHHHHHHHHHhCCCchHH
Q 005181 168 CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSG--GSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 168 ~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
.. ++..++.+++++.++...++.+........ .....-..+..+.+++.++|.+-.+
T Consensus 153 L~--sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~l 211 (447)
T 3pvs_A 153 LL--SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRA 211 (447)
T ss_dssp HH--TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHH
T ss_pred Hh--CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHH
Confidence 11 223688999999999999999987542111 0112224467788888899987544
No 181
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.43 E-value=2.7e-06 Score=86.16 Aligned_cols=180 Identities=12% Similarity=0.041 Sum_probs=97.8
Q ss_pred CCceeecccchhhc-----------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 21 HAGFSGKEDNNQLI-----------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
=++++|.+...+.+ ....+.|.|+|++|+|||++|+++++.. .+ ...+.+....-...
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~--~~~~~i~~~~l~~~- 85 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--NN--STFFSISSSDLVSK- 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT--TS--CEEEEEECCSSCCS-
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc--CC--CcEEEEEhHHHHhh-
Confidence 35688877766655 1124789999999999999999998762 11 12333443321100
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-------------hHHHHHHhcCC--
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-------------FWGDVEYALLD-- 148 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~-- 148 (710)
........+...+...-..++.+|++|+++... ....+...+..
T Consensus 86 ---------------------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 86 ---------------------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 144 (322)
T ss_dssp ---------------------SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS
T ss_pred ---------------------hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc
Confidence 000011112222222224567899999998651 11222222222
Q ss_pred -CCCCcEEEEEcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC-chHH
Q 005181 149 -SKKCGRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL-PLAI 226 (710)
Q Consensus 149 -~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal 226 (710)
...+..||.||..+..............+.++..+.++-.+++........ ..........|++.+.|+ +-.+
T Consensus 145 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----~~l~~~~l~~la~~t~G~sgadl 219 (322)
T 1xwi_A 145 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ-----NSLTEADFRELGRKTDGYSGADI 219 (322)
T ss_dssp SCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC-----BCCCHHHHHHHHHTCTTCCHHHH
T ss_pred ccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHcCCCCHHHH
Confidence 223334444554432211110011226788999999999999988874321 111235678889999887 4445
Q ss_pred HHHHh
Q 005181 227 VAVGG 231 (710)
Q Consensus 227 ~~~~~ 231 (710)
..+.+
T Consensus 220 ~~l~~ 224 (322)
T 1xwi_A 220 SIIVR 224 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 182
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=1.9e-06 Score=89.09 Aligned_cols=187 Identities=10% Similarity=0.038 Sum_probs=106.5
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcC-cEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFN-CRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~-~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-.+++|++..++.+ .+....+.|+|++|+||||+|+.+++.......+. .++.+..+..... ..+.+....+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 114 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI-SIVREKVKNFA 114 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH-HHHTTHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch-HHHHHHHHHHh
Confidence 46799999999888 33334489999999999999999988631111121 2344444332222 22222222222
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCchh-hhhhccCC
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHMN-VAKYCKSS 171 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~~-~~~~~~~~ 171 (710)
...... . ... .....-.++.-++++|+++... ....+...+.......++|+++.... +......
T Consensus 115 ~~~~~~---~-~~~-------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s- 182 (353)
T 1sxj_D 115 RLTVSK---P-SKH-------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS- 182 (353)
T ss_dssp HSCCCC---C-CTT-------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH-
T ss_pred hhcccc---c-chh-------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc-
Confidence 110000 0 000 0001112355799999998764 33445555544444566777665432 2222111
Q ss_pred CCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 172 SSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 172 ~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
+...+.+++++.++....+...+.... . .-.++..+.|++.++|.|..+
T Consensus 183 -R~~~i~~~~~~~~~~~~~l~~~~~~~~--~---~i~~~~l~~l~~~~~G~~r~~ 231 (353)
T 1sxj_D 183 -QCSKFRFKALDASNAIDRLRFISEQEN--V---KCDDGVLERILDISAGDLRRG 231 (353)
T ss_dssp -HSEEEECCCCCHHHHHHHHHHHHHTTT--C---CCCHHHHHHHHHHTSSCHHHH
T ss_pred -cCceEEeCCCCHHHHHHHHHHHHHHhC--C---CCCHHHHHHHHHHcCCCHHHH
Confidence 115789999999999999988764321 1 112467888999999998764
No 183
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.38 E-value=5e-06 Score=86.93 Aligned_cols=177 Identities=10% Similarity=0.012 Sum_probs=95.3
Q ss_pred CCceeecccchhhc-----------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 21 HAGFSGKEDNNQLI-----------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
-++++|.+...+.+ ....+.+.|+|++|+|||++|+++++. ... .++.+++..-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhcc-
Confidence 45799999888776 022478999999999999999999776 221 2344443322110
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-------------hHHHHHHhc---C
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-------------FWGDVEYAL---L 147 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l---~ 147 (710)
. .+ .....+...+...-...+.+|+||+++... ....+...+ .
T Consensus 188 -----~---~g-------------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 188 -----Y---VG-------------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp -------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC
T ss_pred -----c---cc-------------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 0 00 000111222222223456799999997541 111122111 1
Q ss_pred CC-CCCcEEEEEcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch-H
Q 005181 148 DS-KKCGRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL-A 225 (710)
Q Consensus 148 ~~-~~~~~ilvTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-a 225 (710)
.. .....||.||.................+.++..+.++..+++...+.... . .-..+....+++.+.|+.- +
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~--~---~l~~~~~~~la~~~~g~~~~~ 321 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG--S---PLTQKELAQLARMTDGYSGSD 321 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC--C---CSCHHHHHHHHHHTTTCCHHH
T ss_pred ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC--C---CCCHHHHHHHHHHcCCCCHHH
Confidence 11 22334554555432211111111225788999999999999988874321 1 1123567788889988654 5
Q ss_pred HHHH
Q 005181 226 IVAV 229 (710)
Q Consensus 226 l~~~ 229 (710)
+..+
T Consensus 322 l~~L 325 (389)
T 3vfd_A 322 LTAL 325 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 184
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1e-06 Score=95.65 Aligned_cols=185 Identities=12% Similarity=0.059 Sum_probs=102.2
Q ss_pred CCceeecccchhhc----c------------------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 21 HAGFSGKEDNNQLI----Q------------------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 21 ~~~~vGre~~~~~i----~------------------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
-++++|++..++.+ . +..+.+.|+|++|+||||+|+.+++.. . -.++.++++.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~-~~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----G-YDILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----T-CEEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----C-CCEEEEeCCC
Confidence 36799999988877 1 135799999999999999999998762 1 1345555555
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-----hHHHHHHhcCCCCCCc
Q 005181 79 EYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-----FWGDVEYALLDSKKCG 153 (710)
Q Consensus 79 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-----~~~~~~~~l~~~~~~~ 153 (710)
..... .+...+....... ......... .. .....+++.+||+|+++... .+..+...+... +.
T Consensus 113 ~~~~~-~~~~~i~~~~~~~--~~~~~~~~~-----~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~ 180 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNM--SVVGYFKHN-----EE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--ST 180 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBC--CSTTTTTC-----------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SS
T ss_pred cchHH-HHHHHHHHHhccc--cHHHHHhhh-----hh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CC
Confidence 43332 2222211111100 000000000 00 00123567899999997653 223444443322 22
Q ss_pred EEEEEcCchh---hhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc-hHHHHH
Q 005181 154 RIIVTTRHMN---VAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP-LAIVAV 229 (710)
Q Consensus 154 ~ilvTtR~~~---~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 229 (710)
.||+++.... +... ......+.+++++.++..+++...+.... ... .++....|++.++|.+ .++..+
T Consensus 181 ~iIli~~~~~~~~l~~l---~~r~~~i~f~~~~~~~~~~~L~~i~~~~~--~~i---~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 181 PLILICNERNLPKMRPF---DRVCLDIQFRRPDANSIKSRLMTIAIREK--FKL---DPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp CEEEEESCTTSSTTGGG---TTTSEEEECCCCCHHHHHHHHHHHHHHHT--CCC---CTTHHHHHHHHTTTCHHHHHHHH
T ss_pred CEEEEEcCCCCccchhh---HhceEEEEeCCCCHHHHHHHHHHHHHHcC--CCC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 3555444322 2221 12236789999999999999887764221 111 1245778889999864 445444
Q ss_pred H
Q 005181 230 G 230 (710)
Q Consensus 230 ~ 230 (710)
.
T Consensus 253 ~ 253 (516)
T 1sxj_A 253 S 253 (516)
T ss_dssp T
T ss_pred H
Confidence 3
No 185
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=3.7e-07 Score=94.50 Aligned_cols=97 Identities=10% Similarity=0.058 Sum_probs=62.3
Q ss_pred CCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCC
Q 005181 123 DKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPS 199 (710)
Q Consensus 123 ~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 199 (710)
+++-++|+|+++..+ ....+...+.....++.+|++|.+. .+....... ...+++++++.++..+.+...+....
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR--~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQ--CLLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhh--ceEEecCCcCHHHHHHHHHHHHHHcC
Confidence 356699999998865 2344555554444566777777653 232222221 26899999999999999988763211
Q ss_pred CCCCCchhH-HHHHHHHHHHhCCCchHH
Q 005181 200 SGGSCPSEL-RELSRDILAKCGGLPLAI 226 (710)
Q Consensus 200 ~~~~~~~~~-~~~~~~i~~~~~g~Plal 226 (710)
..-. ++.+..|++.++|.+..+
T Consensus 211 -----~~~~~~~~l~~i~~~~~G~~r~a 233 (354)
T 1sxj_E 211 -----IQLETKDILKRIAQASNGNLRVS 233 (354)
T ss_dssp -----CEECCSHHHHHHHHHHTTCHHHH
T ss_pred -----CCCCcHHHHHHHHHHcCCCHHHH
Confidence 0111 367788999999988654
No 186
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.35 E-value=8.3e-06 Score=84.00 Aligned_cols=178 Identities=11% Similarity=0.022 Sum_probs=98.9
Q ss_pred CCceeecccchhhc-----------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 21 HAGFSGKEDNNQLI-----------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
-++++|.+...+.+ ....+.|.|+|++|+|||++|++++.. ... ..+.++++.-...
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTSK- 156 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCCS-
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhcc-
Confidence 35689998887766 123578999999999999999999876 221 2344544321110
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-------------hHHHHHHhcCC--
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-------------FWGDVEYALLD-- 148 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~-- 148 (710)
........+...+...-..++.+|+||+++... ....+...+..
T Consensus 157 ---------------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 157 ---------------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp ---------------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC--
T ss_pred ---------------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc
Confidence 000001111122222223567899999995431 12233333321
Q ss_pred --CCCCcEEEEEcCchh-hhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC-ch
Q 005181 149 --SKKCGRIIVTTRHMN-VAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL-PL 224 (710)
Q Consensus 149 --~~~~~~ilvTtR~~~-~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl 224 (710)
...+..||.||.... +...... .....+.++..+.++..+++...+.... .. -..+....|++.+.|+ +-
T Consensus 216 ~~~~~~v~vI~atn~~~~l~~~l~~-Rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~---l~~~~l~~la~~t~G~s~~ 289 (357)
T 3d8b_A 216 TSSEDRILVVGATNRPQEIDEAARR-RLVKRLYIPLPEASARKQIVINLMSKEQ--CC---LSEEEIEQIVQQSDAFSGA 289 (357)
T ss_dssp --CCCCEEEEEEESCGGGBCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHHTSC--BC---CCHHHHHHHHHHTTTCCHH
T ss_pred ccCCCCEEEEEecCChhhCCHHHHh-hCceEEEeCCcCHHHHHHHHHHHHhhcC--CC---ccHHHHHHHHHHcCCCCHH
Confidence 122334554665432 2211111 2225788999999999999988764321 11 1235678888899885 55
Q ss_pred HHHHHHh
Q 005181 225 AIVAVGG 231 (710)
Q Consensus 225 al~~~~~ 231 (710)
++..+.+
T Consensus 290 dl~~l~~ 296 (357)
T 3d8b_A 290 DMTQLCR 296 (357)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 187
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.35 E-value=3.6e-06 Score=83.34 Aligned_cols=166 Identities=15% Similarity=0.060 Sum_probs=90.8
Q ss_pred CCceeecccchhhc---------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHH
Q 005181 21 HAGFSGKEDNNQLI---------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDL 85 (710)
Q Consensus 21 ~~~~vGre~~~~~i---------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~ 85 (710)
...++|.+..++.+ ....+.+.|+|++|+|||++|+++++. ... ..+.+.+...
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~---~~~~i~~~~~------ 100 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNF---PFIKICSPDK------ 100 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTC---SEEEEECGGG------
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCC---CEEEEeCHHH------
Confidence 45678887765544 234578999999999999999999876 222 1233333210
Q ss_pred HHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCc----------c--hHHHHHHhcCC---CC
Q 005181 86 LRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKI----------D--FWGDVEYALLD---SK 150 (710)
Q Consensus 86 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~----------~--~~~~~~~~l~~---~~ 150 (710)
+. ... .......+...+......+..+|++|+++.. . .+..+...+.. ..
T Consensus 101 -------~~-----g~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~ 165 (272)
T 1d2n_A 101 -------MI-----GFS---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQG 165 (272)
T ss_dssp -------CT-----TCC---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTT
T ss_pred -------hc-----CCc---hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCC
Confidence 00 000 0000112223333334466889999998653 1 12333333332 22
Q ss_pred CCcEEEEEcCchhhhhhcc-CCCCcceEEccCCCc-hhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC
Q 005181 151 KCGRIIVTTRHMNVAKYCK-SSSSVHVHELETLPP-NEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL 222 (710)
Q Consensus 151 ~~~~ilvTtR~~~~~~~~~-~~~~~~~~~l~~l~~-~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 222 (710)
....||.||.......... .......+.+++++. ++..+++.+... . ..+....+++.+.|.
T Consensus 166 ~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~------~----~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 166 RKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN------F----KDKERTTIAQQVKGK 229 (272)
T ss_dssp CEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC------S----CHHHHHHHHHHHTTS
T ss_pred CCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC------C----CHHHHHHHHHHhcCC
Confidence 2234566777664443311 122236789999998 666666655321 1 135677888888874
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.30 E-value=3.1e-06 Score=85.98 Aligned_cols=178 Identities=11% Similarity=0.030 Sum_probs=98.7
Q ss_pred CCceeecccchhhc-----------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 21 HAGFSGKEDNNQLI-----------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
=++++|.+...+.+ ....+.+.|+|++|+|||++|+++++. .... .+.++++
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~------ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------ 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH------
Confidence 35688988877666 112467999999999999999999876 2222 2333321
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcch-------------HHHHHHhcC---
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKIDF-------------WGDVEYALL--- 147 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~~-------------~~~~~~~l~--- 147 (710)
++..... ......+...+...-..++.+|++|+++.... ...+...+.
T Consensus 86 ----~l~~~~~------------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 149 (322)
T 3eie_A 86 ----DLVSKWM------------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 149 (322)
T ss_dssp ----HHHTTTG------------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG
T ss_pred ----HHhhccc------------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc
Confidence 1111100 00111122222233345678999999985421 233333332
Q ss_pred CCCCCcEEEEEcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC-chHH
Q 005181 148 DSKKCGRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL-PLAI 226 (710)
Q Consensus 148 ~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal 226 (710)
....+..||.||..+......-.......+.++..+.++-.+++...+.... .. ........|++.+.|+ +-.+
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~--~~---~~~~~l~~la~~t~g~sg~di 224 (322)
T 3eie_A 150 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP--CV---LTKEDYRTLGAMTEGYSGSDI 224 (322)
T ss_dssp TSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC--CC---CCHHHHHHHHHTTTTCCHHHH
T ss_pred ccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC--CC---CCHHHHHHHHHHcCCCCHHHH
Confidence 2233445555666533221100001225788999999999999999874321 11 1234677888888875 4455
Q ss_pred HHHH
Q 005181 227 VAVG 230 (710)
Q Consensus 227 ~~~~ 230 (710)
..+.
T Consensus 225 ~~l~ 228 (322)
T 3eie_A 225 AVVV 228 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 189
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.29 E-value=4.8e-06 Score=88.37 Aligned_cols=180 Identities=10% Similarity=0.068 Sum_probs=96.7
Q ss_pred CCCceeecccchhhc-----------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCH
Q 005181 20 PHAGFSGKEDNNQLI-----------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKK 82 (710)
Q Consensus 20 ~~~~~vGre~~~~~i-----------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (710)
.-++++|.+...+.+ ....+.|.|+|++|+|||++|+++++.. . +.-|+.++...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~--~----~~~~~~v~~~~-- 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--N----NSTFFSISSSD-- 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC--C----SSEEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc--C----CCCEEEEeHHH--
Confidence 346789988776665 1234789999999999999999998762 1 11233333221
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-------------hHHHHHHhcCC-
Q 005181 83 NDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-------------FWGDVEYALLD- 148 (710)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~- 148 (710)
+.. ...... ......+ +...-...+.+|++|+++... ....+...+..
T Consensus 204 --l~~----~~~g~~---------~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~ 265 (444)
T 2zan_A 204 --LVS----KWLGES---------EKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV 265 (444)
T ss_dssp --------------C---------CCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCS
T ss_pred --HHh----hhcchH---------HHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCc
Confidence 111 110000 0011122 222223567899999998651 11223322322
Q ss_pred --CCCCcEEEEEcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC-chH
Q 005181 149 --SKKCGRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL-PLA 225 (710)
Q Consensus 149 --~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pla 225 (710)
...+..||.||..+......-.......+.++..+.++...+|........ ..........|++.+.|+ +-.
T Consensus 266 ~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----~~l~~~~l~~la~~t~G~sgad 340 (444)
T 2zan_A 266 GVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ-----NSLTEADFQELGRKTDGYSGAD 340 (444)
T ss_dssp SCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----EECCHHHHHHHHHHTTTCCHHH
T ss_pred ccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHcCCCCHHH
Confidence 123345555665443221111112225788999999999999988874321 111235677888899885 445
Q ss_pred HHHHH
Q 005181 226 IVAVG 230 (710)
Q Consensus 226 l~~~~ 230 (710)
|..+.
T Consensus 341 l~~l~ 345 (444)
T 2zan_A 341 ISIIV 345 (444)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.27 E-value=5.1e-06 Score=83.43 Aligned_cols=176 Identities=12% Similarity=0.022 Sum_probs=95.3
Q ss_pred CCceeecccchhhc-----c------------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 21 HAGFSGKEDNNQLI-----Q------------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~------------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
-++++|.+...+.+ . ...+.+.|+|++|+||||+|++++.. ... ..+.++++.-...
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~---~~~~i~~~~l~~~- 93 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSA---TFLNISAASLTSK- 93 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTC---EEEEEESTTTSSS-
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCC---CeEEeeHHHHhhc-
Confidence 35789998887766 0 23578999999999999999999876 221 2334444322110
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-------------hHHHHHHh---cC
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-------------FWGDVEYA---LL 147 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~---l~ 147 (710)
............+.......+.+|++|+++... ....+... .+
T Consensus 94 ---------------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 152 (297)
T 3b9p_A 94 ---------------------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLP 152 (297)
T ss_dssp ---------------------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC
T ss_pred ---------------------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccc
Confidence 000011111122222233567899999997641 01112222 22
Q ss_pred CCC--CCcEEEEEcCchhhh-hhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCch
Q 005181 148 DSK--KCGRIIVTTRHMNVA-KYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPL 224 (710)
Q Consensus 148 ~~~--~~~~ilvTtR~~~~~-~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 224 (710)
... .+..||.||..+... ..... .....+.++..+.++...++...+.... .. -..+....+++.+.|++-
T Consensus 153 ~~~~~~~v~vi~~tn~~~~l~~~l~~-R~~~~i~~~~p~~~~r~~il~~~~~~~~--~~---~~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 153 GNPDGDRIVVLAATNRPQELDEAALR-RFTKRVYVSLPDEQTRELLLNRLLQKQG--SP---LDTEALRRLAKITDGYSG 226 (297)
T ss_dssp ------CEEEEEEESCGGGBCHHHHH-HCCEEEECCCCCHHHHHHHHHHHHGGGS--CC---SCHHHHHHHHHHTTTCCH
T ss_pred ccCCCCcEEEEeecCChhhCCHHHHh-hCCeEEEeCCcCHHHHHHHHHHHHHhcC--CC---CCHHHHHHHHHHcCCCCH
Confidence 211 233455566653211 11110 1125778888888888888888764321 11 123567788889999875
Q ss_pred -HHHHH
Q 005181 225 -AIVAV 229 (710)
Q Consensus 225 -al~~~ 229 (710)
++..+
T Consensus 227 ~~l~~l 232 (297)
T 3b9p_A 227 SDLTAL 232 (297)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 55433
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.25 E-value=5.9e-06 Score=84.09 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=87.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
....+.|+|++|+||||+|+.+++.. ...-..++++++. ....++...+... . ...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~--~~~~~~~~~i~~~------~~~~~~~~~~~~~------------~----~~~ 91 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSAD------DFAQAMVEHLKKG------------T----INE 91 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEEHH------HHHHHHHHHHHHT------------C----HHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEHH------HHHHHHHHHHHcC------------c----HHH
Confidence 34688999999999999999998863 2212245666542 2333333333211 0 111
Q ss_pred HHHHhcCCceEEEEecCCCcc---h-HHHHHHhcCC-CCCCcEEEEEcCchh---------hhhhccCCCCcceEEccCC
Q 005181 117 LRDHLKDKSYMVVFDDVWKID---F-WGDVEYALLD-SKKCGRIIVTTRHMN---------VAKYCKSSSSVHVHELETL 182 (710)
Q Consensus 117 ~~~~l~~~~~LlvlDdv~~~~---~-~~~~~~~l~~-~~~~~~ilvTtR~~~---------~~~~~~~~~~~~~~~l~~l 182 (710)
+..... +.-+|++|+++... . .+.+...+.. ...+..+|+|+.... +...+... .++++++
T Consensus 92 ~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~---~~i~l~~- 166 (324)
T 1l8q_A 92 FRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG---ILVEIEL- 166 (324)
T ss_dssp HHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS---EEEECCC-
T ss_pred HHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc---eEEEeCC-
Confidence 222222 36799999997653 1 2223333221 123456777775421 11111111 5789999
Q ss_pred CchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchH
Q 005181 183 PPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLA 225 (710)
Q Consensus 183 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 225 (710)
+.++..+++...+... +... ..+..+.|++.+ |..-.
T Consensus 167 ~~~e~~~il~~~~~~~--~~~l---~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 167 DNKTRFKIIKEKLKEF--NLEL---RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CHHHHHHHHHHHHHHT--TCCC---CHHHHHHHHHHC-SSHHH
T ss_pred CHHHHHHHHHHHHHhc--CCCC---CHHHHHHHHHhC-CCHHH
Confidence 9999999999887432 1111 235677788888 77643
No 192
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.25 E-value=1.6e-07 Score=86.93 Aligned_cols=87 Identities=13% Similarity=0.149 Sum_probs=63.8
Q ss_pred chhhhhhcccccccEEecCCC-CCc-----cCcccccCcccceEEEecccccc-----ccCcchhcccCCCEEEcCCCcc
Q 005181 418 SFMNASIANFKLMKVLDLEDA-PVD-----YLPEGVGNLFNLHYLSVKNTEVK-----IIPKSIRNLLSLEILDLKNTLV 486 (710)
Q Consensus 418 ~~~~~~~~~~~~L~~L~l~~n-~~~-----~l~~~~~~l~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~ 486 (710)
..+...+...+.|++|+|++| .+. .+...+...++|++|+|++|.|. .+...+...++|++|+|++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 345567778888999999988 776 24555667788888888888886 2444566667888888888877
Q ss_pred cc-----ccccccccccCcEEEc
Q 005181 487 SE-----LPVEIRNLKKLRYLMV 504 (710)
Q Consensus 487 ~~-----~~~~~~~l~~L~~L~l 504 (710)
+. +...+...++|++|+|
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CHHHHHHHHHHHHhCCCceEEEe
Confidence 64 3455666777888888
No 193
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=3.2e-06 Score=86.40 Aligned_cols=169 Identities=12% Similarity=0.040 Sum_probs=96.0
Q ss_pred Cceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 22 AGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 22 ~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
+++.|-++..+.| ....+-|.++||+|+|||.+|+++|.. .... .+.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCK---FIRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCE---EEEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCC---ceEEEhHHhhc--
Confidence 5678887777665 233577889999999999999999887 2222 23444322111
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc----------------hHHHHHHhcC
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID----------------FWGDVEYALL 147 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~l~ 147 (710)
...+.....+...+...-...++++++|+++... .+..++..+.
T Consensus 221 --------------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 280 (405)
T 4b4t_J 221 --------------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLD 280 (405)
T ss_dssp --------------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHH
T ss_pred --------------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhh
Confidence 0011111222233333334578999999997531 1222333333
Q ss_pred CC--CCCcEEEEEcCchhhhhh--ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 148 DS--KKCGRIIVTTRHMNVAKY--CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 148 ~~--~~~~~ilvTtR~~~~~~~--~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
.. ..+-.||.||-.++.... .+.......+.++..+.++-.++|..+..... .... ....+|++.+.|+-
T Consensus 281 g~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--l~~d----vdl~~lA~~t~G~S 354 (405)
T 4b4t_J 281 GFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN--LTRG----INLRKVAEKMNGCS 354 (405)
T ss_dssp TTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB--CCSS----CCHHHHHHHCCSCC
T ss_pred ccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC--CCcc----CCHHHHHHHCCCCC
Confidence 22 223244556654433222 22334457899999999999999988864321 1111 12567777887763
No 194
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.23 E-value=9e-06 Score=82.92 Aligned_cols=92 Identities=16% Similarity=0.089 Sum_probs=64.7
Q ss_pred CCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCC
Q 005181 123 DKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPS 199 (710)
Q Consensus 123 ~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 199 (710)
+++-++|+|+++... ....+...+...+.++.+|++|.++ .+....... -..+.+++++.++..+.+.+...-
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR--c~~~~~~~~~~~~~~~~L~~~~~~-- 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR--CRLHYLAPPPEQYAVTWLSREVTM-- 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHCCC--
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc--ceeeeCCCCCHHHHHHHHHHhcCC--
Confidence 456789999998865 4556777776666667766666554 344433332 268999999999999999887510
Q ss_pred CCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 200 SGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 200 ~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
.++.+..+++.++|.|..+
T Consensus 183 --------~~~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 183 --------SQDALLAALRLSAGSPGAA 201 (334)
T ss_dssp --------CHHHHHHHHHHTTTCHHHH
T ss_pred --------CHHHHHHHHHHcCCCHHHH
Confidence 1356678899999998654
No 195
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.23 E-value=3.3e-06 Score=85.42 Aligned_cols=149 Identities=13% Similarity=0.077 Sum_probs=84.1
Q ss_pred ceeecccchhhc--------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcC--cEEEEEeCCCC
Q 005181 23 GFSGKEDNNQLI--------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFN--CRAWITVGKEY 80 (710)
Q Consensus 23 ~~vGre~~~~~i--------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~--~~~~v~~~~~~ 80 (710)
+++|.+...+.+ ......+.|+|++|+|||++|+.+++......... .++.++...-.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 588888877766 12345799999999999999998887632222111 23443321110
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCc-----------chHHHHHHhcCCC
Q 005181 81 KKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKI-----------DFWGDVEYALLDS 149 (710)
Q Consensus 81 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~-----------~~~~~~~~~l~~~ 149 (710)
. .........+...+... +.-+|++|+++.. +....+...+...
T Consensus 112 --------------~--------~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~ 166 (309)
T 3syl_A 112 --------------G--------QYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN 166 (309)
T ss_dssp --------------C--------SSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC
T ss_pred --------------h--------hcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC
Confidence 0 00000111122222222 3459999999844 2334455555545
Q ss_pred CCCcEEEEEcCchhhhhhc--cC---CCCcceEEccCCCchhHHHHHHHHHc
Q 005181 150 KKCGRIIVTTRHMNVAKYC--KS---SSSVHVHELETLPPNEAWKLFCRKAF 196 (710)
Q Consensus 150 ~~~~~ilvTtR~~~~~~~~--~~---~~~~~~~~l~~l~~~ea~~l~~~~~~ 196 (710)
..+..+|.||......... .. ......+.+++++.++..+++...+.
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 167 RDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp TTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 5556777777543211100 00 01126889999999999999988874
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.21 E-value=5.1e-06 Score=85.45 Aligned_cols=176 Identities=13% Similarity=0.069 Sum_probs=96.3
Q ss_pred CCceeecccchhhcc-----------------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 21 HAGFSGKEDNNQLIQ-----------------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 21 ~~~~vGre~~~~~i~-----------------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
-++++|.+...+.|. ...+.|.|+|++|+|||++|+++++. ... ..+.+.+.
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~---~~~~v~~~------ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANS---TFFSVSSS------ 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTC---EEEEEEHH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCC---CEEEeeHH------
Confidence 467899988877660 12356889999999999999999886 222 22333321
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-------------hHHHHHHhcC---
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-------------FWGDVEYALL--- 147 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~--- 147 (710)
++ ..... ......+...+...-..++.+|+||+++... ....+...+.
T Consensus 119 ~l----~~~~~------------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 119 DL----VSKWM------------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp HH----HSCC---------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC
T ss_pred HH----hhhhc------------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc
Confidence 11 10000 0011111222222223577899999998642 1223333222
Q ss_pred CCCCCcEEEEEcCchhhh-hhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC-chH
Q 005181 148 DSKKCGRIIVTTRHMNVA-KYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL-PLA 225 (710)
Q Consensus 148 ~~~~~~~ilvTtR~~~~~-~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pla 225 (710)
....+..||.||..+... ..... .....+.+++.+.++-.+++........ .. -.......|++.+.|+ +-.
T Consensus 183 ~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~--~~---~~~~~l~~la~~t~G~sg~d 256 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAARTTMFEINVGDTP--SV---LTKEDYRTLGAMTEGYSGSD 256 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHH-TCCEEEECCCCCHHHHHHHHHHHHTTSC--BC---CCHHHHHHHHHHTTTCCHHH
T ss_pred ccCCCeEEEeecCCcccCCHHHHc-ccCEEEEeCCcCHHHHHHHHHHHHhhCC--CC---CCHHHHHHHHHHcCCCCHHH
Confidence 222344455566544211 11111 2226788999999999999998874321 11 1235677888899885 444
Q ss_pred HHHH
Q 005181 226 IVAV 229 (710)
Q Consensus 226 l~~~ 229 (710)
|..+
T Consensus 257 l~~l 260 (355)
T 2qp9_X 257 IAVV 260 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 197
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=6.8e-06 Score=85.47 Aligned_cols=169 Identities=11% Similarity=0.063 Sum_probs=95.9
Q ss_pred Cceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 22 AGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 22 ~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
+++.|-++..+.| ....+-|.++||+|+|||++|+++|+. .... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhhcc--
Confidence 5678887777665 234588999999999999999999887 2222 34444332211
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc----------------hHHHHHHhcC
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID----------------FWGDVEYALL 147 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~l~ 147 (710)
...+.....+...+...-...+++|++|+++..- .+..++..+.
T Consensus 254 --------------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 313 (437)
T 4b4t_L 254 --------------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMD 313 (437)
T ss_dssp --------------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHH
T ss_pred --------------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhh
Confidence 0011111122222333334578999999997531 1223333332
Q ss_pred C--CCCCcEEEEEcCchhhhhhc--cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 148 D--SKKCGRIIVTTRHMNVAKYC--KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 148 ~--~~~~~~ilvTtR~~~~~~~~--~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
. ...+-.||.||-.++..... +.......+.++..+.++-.++|..+...... ... .....+++.+.|+-
T Consensus 314 g~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~d----~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 314 GFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK--TGE----FDFEAAVKMSDGFN 387 (437)
T ss_dssp SSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB--CSC----CCHHHHHHTCCSCC
T ss_pred cccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC--Ccc----cCHHHHHHhCCCCC
Confidence 2 22333566666655433222 22223467889888888888999887643211 111 12466777787763
No 198
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.16 E-value=4.8e-06 Score=84.82 Aligned_cols=169 Identities=13% Similarity=0.077 Sum_probs=95.6
Q ss_pred CCceeecccchhhc------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 21 HAGFSGKEDNNQLI------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 21 ~~~~vGre~~~~~i------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-++++|++..++.+ ......+.++|++|+|||++|+++++.. . ..+++++.+... ...+...+....
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~~~--~~~i~~~~~~~~ 97 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSDCK--IDFVRGPLTNFA 97 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTTCC--HHHHHTHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEcccccC--HHHHHHHHHHHH
Confidence 36799999888877 2334677888899999999999998762 1 234555543321 222222222211
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc---hHHHHHHhcCCCCCCcEEEEEcCchh-hhhhccC
Q 005181 95 RVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID---FWGDVEYALLDSKKCGRIIVTTRHMN-VAKYCKS 170 (710)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~---~~~~~~~~l~~~~~~~~ilvTtR~~~-~~~~~~~ 170 (710)
... ...+++-++|+|+++... ..+.+...+.....+..+|+||.... +......
T Consensus 98 ~~~----------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 98 SAA----------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp HBC----------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred hhc----------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 100 012367899999998764 33344444433334557777776543 1111111
Q ss_pred CCCcceEEccCCCchhHHHHHHH-------HHcCCCCCCCCchhHH-HHHHHHHHHhCCCchH
Q 005181 171 SSSVHVHELETLPPNEAWKLFCR-------KAFGPSSGGSCPSELR-ELSRDILAKCGGLPLA 225 (710)
Q Consensus 171 ~~~~~~~~l~~l~~~ea~~l~~~-------~~~~~~~~~~~~~~~~-~~~~~i~~~~~g~Pla 225 (710)
+..++++++++.++-.+++.. .+... +. .-.. +.+..+++.++|.+..
T Consensus 156 --R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~--~~---~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 156 --RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHE--GI---AIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp --HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH--TC---CBSCHHHHHHHHHHTCSCTTH
T ss_pred --hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHc--CC---CCCcHHHHHHHHHhCCCCHHH
Confidence 125789999998884433322 22111 00 0112 6677888888887653
No 199
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.13 E-value=5.6e-05 Score=78.73 Aligned_cols=262 Identities=10% Similarity=0.033 Sum_probs=158.0
Q ss_pred EEeCCCccccCCceeEEEEEccCcccccccCCCCceeEEEeecCCCCCcchhhhhhcccccccEEecCCCCCccCc-ccc
Q 005181 369 RVLNGVDLSRCSKTRRIAIQRSIDDGALESIKDSKVRSVFLFNVDKLPDSFMNASIANFKLMKVLDLEDAPVDYLP-EGV 447 (710)
Q Consensus 369 ~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~l~-~~~ 447 (710)
...+..++..+.+++.+.+..............+++..+.+...- ..+...+|..+ +|+.+.+..+ +..+. ..|
T Consensus 58 t~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c~l~~i~~~~~l---~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F 132 (379)
T 4h09_A 58 TSIGEANFNSCYNMTKVTVASTVTSIGDGAFADTKLQSYTGMERV---KKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIF 132 (379)
T ss_dssp EEECTTTTTTCTTCCEEEECTTCCEECTTTTTTCCCCEEEECTTC---CEECTTTTTTC-CCSEEECCTT-CCEECTTTT
T ss_pred cChHHHHhhCCCCCCEEEeCCcceEechhhhcCCCCceEECCcee---eEeccceeccC-CcccccCCCc-ccccccccc
Confidence 456677888999999999865433222122222367777665432 23445566665 7888888765 33332 233
Q ss_pred cCcccceEEEeccccccccC-cchhcccCCCEEEcCCCcc------------------------------------cccc
Q 005181 448 GNLFNLHYLSVKNTEVKIIP-KSIRNLLSLEILDLKNTLV------------------------------------SELP 490 (710)
Q Consensus 448 ~~l~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~------------------------------------~~~~ 490 (710)
.++ +|+.+.+..+ ++.+. ..+..+.+|+.+.+..+.. ....
T Consensus 133 ~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (379)
T 4h09_A 133 YNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTA 210 (379)
T ss_dssp TTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECT
T ss_pred ccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEee
Confidence 332 4555544332 33222 2355556666555542211 1111
Q ss_pred ccccccccCcEEEccccccccCccCCchhhhhccCCCCcCccEEEEeecCCCCCc-cccCCCCccEEEEEeeccCCcccc
Q 005181 491 VEIRNLKKLRYLMVYRYNYTTGSIMPAEAVAKSLSSPPQYLQRLYLMGNMKKLPD-WIFKLENLIRLGLELSGLAEEPIR 569 (710)
Q Consensus 491 ~~~~~l~~L~~L~l~~~n~~~~~~~~~~~~~~~l~~~~~~L~~L~L~~n~~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~ 569 (710)
..+..+.+|+.+.+.. + ++.. ....+..+..|+.+.+..++..+.. .|.++.+|+.+.+..+ ++.....
T Consensus 211 ~~f~~~~~l~~i~~~~-~-~~~i-------~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~ 280 (379)
T 4h09_A 211 YGFSYGKNLKKITITS-G-VTTL-------GDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYL 280 (379)
T ss_dssp TTTTTCSSCSEEECCT-T-CCEE-------CTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTT
T ss_pred cccccccccceeeecc-c-eeEE-------ccccccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceecccc
Confidence 1233445555555532 1 1100 1123344568999999888666644 6788999999998643 5555667
Q ss_pred ccccccccceEEeecccCCceeEEecCCCCcccEEEeccCCCceeeeecCCcCCCccEEEEccCCCCCCCccccccCCCC
Q 005181 570 VLQASPNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVKSVIIEKGAMPDIRELEIGPCPLLMEIPIGIEHLRNL 649 (710)
Q Consensus 570 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 649 (710)
.|..+.+|+.+.+.++.+..+....|.+|.+|+.+.|..+ +...-...|.+|++|+.+.+..+ +...-...|.++..+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 8899999999999888777776778899999999999754 33333457889999999988654 332223456666433
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.13 E-value=1.1e-05 Score=80.91 Aligned_cols=172 Identities=15% Similarity=0.088 Sum_probs=96.0
Q ss_pred CCceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCH
Q 005181 21 HAGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKK 82 (710)
Q Consensus 21 ~~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (710)
-++++|.+...+.+ ....+.+.|+|++|+|||++|++++.. ... ..+.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~---~~i~v~------~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA---NFISIK------G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---EEEEEC------H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCC---CEEEEE------h
Confidence 45688988877666 134578999999999999999999876 221 223332 1
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc----------------hHHHHHHhc
Q 005181 83 NDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID----------------FWGDVEYAL 146 (710)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~l 146 (710)
..+ ......... ..+...+.......+.++++|+++... ....+...+
T Consensus 83 ~~l----~~~~~g~~~------------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l 146 (301)
T 3cf0_A 83 PEL----LTMWFGESE------------ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 146 (301)
T ss_dssp HHH----HHHHHTTCT------------THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHH
T ss_pred HHH----HhhhcCchH------------HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHh
Confidence 122 222211110 022233333334567899999997421 123344333
Q ss_pred CC--CCCCcEEEEEcCchhhhh-h-ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC
Q 005181 147 LD--SKKCGRIIVTTRHMNVAK-Y-CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL 222 (710)
Q Consensus 147 ~~--~~~~~~ilvTtR~~~~~~-~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 222 (710)
.. ...+..||.||....... . .........+.+++.+.++-.+++........ .... .....+++.+.|+
T Consensus 147 ~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~--~~~~----~~~~~la~~~~g~ 220 (301)
T 3cf0_A 147 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP--VAKD----VDLEFLAKMTNGF 220 (301)
T ss_dssp HSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCSS----CCHHHHHHTCSSC
T ss_pred hcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC--CCcc----chHHHHHHHcCCC
Confidence 22 123345666665543222 1 12122336789999999999999988764321 1111 1234566677777
Q ss_pred chH
Q 005181 223 PLA 225 (710)
Q Consensus 223 Pla 225 (710)
|-+
T Consensus 221 sg~ 223 (301)
T 3cf0_A 221 SGA 223 (301)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 201
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.5e-05 Score=82.51 Aligned_cols=169 Identities=12% Similarity=0.033 Sum_probs=95.0
Q ss_pred Cceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 22 AGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 22 ~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
+++.|-++..+.| ....+-|.++||+|+|||++|+++|+. .... .+.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCC---eEEEEhHHhhc--
Confidence 4678877766655 245688999999999999999999887 2222 23343322110
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc----------------hHHHHHHhcC
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID----------------FWGDVEYALL 147 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~l~ 147 (710)
...+.....+...+...-...++++++|+++... .+..++..+.
T Consensus 282 --------------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 341 (467)
T 4b4t_H 282 --------------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLD 341 (467)
T ss_dssp --------------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHH
T ss_pred --------------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhh
Confidence 0011111122333333334578999999997531 1122222232
Q ss_pred CC--CCCcEEEEEcCchhhhhh--ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 148 DS--KKCGRIIVTTRHMNVAKY--CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 148 ~~--~~~~~ilvTtR~~~~~~~--~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
.. ..+-.||.||-.++.... .+.......+.++..+.++-.++|..+..... .... -....|++.+.|+-
T Consensus 342 g~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~--l~~d----vdl~~LA~~T~GfS 415 (467)
T 4b4t_H 342 GFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS--VERG----IRWELISRLCPNST 415 (467)
T ss_dssp SSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC--BCSS----CCHHHHHHHCCSCC
T ss_pred ccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC--CCCC----CCHHHHHHHCCCCC
Confidence 22 223244556655433222 22233447889999999999999988874321 1111 12466777887763
No 202
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=6.3e-06 Score=85.64 Aligned_cols=168 Identities=8% Similarity=0.009 Sum_probs=93.2
Q ss_pred Cceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 22 AGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 22 ~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
+++.|-++..+.| ....+-|.+|||+|+|||.+|+++|.. .... .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhhhhh--
Confidence 5677877766655 234678999999999999999999887 2222 23333322110
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCc-------c---------hHHHHHHhcC
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKI-------D---------FWGDVEYALL 147 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~-------~---------~~~~~~~~l~ 147 (710)
...+.....+...+...-...+++|++|+++.. . .+..++..+.
T Consensus 254 --------------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 254 --------------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp --------------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred --------------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 001111111222222222346799999998642 0 1223444444
Q ss_pred CCC--CCcEEEEEcCchhhhhhc--cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC
Q 005181 148 DSK--KCGRIIVTTRHMNVAKYC--KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL 222 (710)
Q Consensus 148 ~~~--~~~~ilvTtR~~~~~~~~--~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 222 (710)
... .+-.||-||..++..... +.......+.++..+.++-.++|..+..... .... -...+|++.+.|+
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--~~~d----vdl~~lA~~t~G~ 386 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT--TDDD----INWQELARSTDEF 386 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC--BCSC----CCHHHHHHHCSSC
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC--CCCc----CCHHHHHHhCCCC
Confidence 332 222455577665443322 2233446789999999888899987764321 1111 1256677788776
No 203
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=1.8e-05 Score=80.99 Aligned_cols=175 Identities=10% Similarity=0.108 Sum_probs=97.4
Q ss_pred Cceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcC-cEEEEEeCCCCCHHHHHHHHHHHHhh
Q 005181 22 AGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFN-CRAWITVGKEYKKNDLLRTILKEFHR 95 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~-~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (710)
++++|.+..++.+ .++...+.++|+.|+||||+|+.++.... ...+. .++.++.+..... ..+++....+..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~-~~ir~~i~~~~~ 102 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGI-DVVRNQIKDFAS 102 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSH-HHHHTHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccH-HHHHHHHHHHHh
Confidence 4578888877777 33333489999999999999999987631 11111 1222222221111 111111111110
Q ss_pred hcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhhccCCC
Q 005181 96 VANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKYCKSSS 172 (710)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~~~~~~ 172 (710)
.. ..+.+.+-++|+|+++... ..+.+...+......+.+|+++... .+.......
T Consensus 103 ~~---------------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR- 160 (340)
T 1sxj_C 103 TR---------------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ- 160 (340)
T ss_dssp BC---------------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT-
T ss_pred hc---------------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh-
Confidence 00 0012346789999997754 3344444444444555666665443 222222221
Q ss_pred CcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 173 SVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 173 ~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
...+.+.+++.++..+.+.+.+.... . .-.++..+.+++.++|.+-.+
T Consensus 161 -~~~~~~~~l~~~~~~~~l~~~~~~~~--~---~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 161 -CTRFRFQPLPQEAIERRIANVLVHEK--L---KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp -SEEEECCCCCHHHHHHHHHHHHHTTT--C---CBCHHHHHHHHHHHTTCHHHH
T ss_pred -ceeEeccCCCHHHHHHHHHHHHHHcC--C---CCCHHHHHHHHHHcCCCHHHH
Confidence 25789999999999998887763221 1 112356788888999987643
No 204
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=1.5e-06 Score=78.25 Aligned_cols=87 Identities=8% Similarity=-0.031 Sum_probs=49.7
Q ss_pred CCCccEEEEEeeccCCccccccccccccceEEeeccc-CCceeEEecCC----CCcccEEEeccCC-CceeeeecCCcCC
Q 005181 550 LENLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTY-DYELFHFEAGW----FPKLQKLLLWDFV-AVKSVIIEKGAMP 623 (710)
Q Consensus 550 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~----~~~L~~L~L~~n~-~~~~~~~~~~~l~ 623 (710)
-.+|+.|++++|.++......+..+++|++|+|++|. ++...-..+.. +++|++|+|++|. ++..--..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3467888888888776666666777777777777774 33321111222 2356666666664 2222112344566
Q ss_pred CccEEEEccCCCC
Q 005181 624 DIRELEIGPCPLL 636 (710)
Q Consensus 624 ~L~~L~l~~n~~~ 636 (710)
+|+.|++++|+..
T Consensus 140 ~L~~L~L~~c~~I 152 (176)
T 3e4g_A 140 NLKYLFLSDLPGV 152 (176)
T ss_dssp TCCEEEEESCTTC
T ss_pred CCCEEECCCCCCC
Confidence 6666666666533
No 205
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=1.2e-05 Score=82.35 Aligned_cols=169 Identities=14% Similarity=0.050 Sum_probs=92.7
Q ss_pred Cceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 22 AGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 22 ~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
+++.|-++..+.| ....+-|.++||+|.|||.+|+++|.. .... .+.++.+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~---fi~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSAT---FLRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCE---EEEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCC---EEEEEHHHhhh--
Confidence 4577777776665 234578999999999999999999887 2222 23333221100
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc----------------hHHHHHHhcC
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID----------------FWGDVEYALL 147 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~l~ 147 (710)
...+.....+...+...-...+++|++|+++... .+..++..+.
T Consensus 255 --------------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 255 --------------------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp --------------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred --------------------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 0011111122222223334568999999987531 1222333322
Q ss_pred --CCCCCcEEEEEcCchhhhhhc--cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 148 --DSKKCGRIIVTTRHMNVAKYC--KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 148 --~~~~~~~ilvTtR~~~~~~~~--~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
....+-.||.||-.++..... +.......+.++..+.++-.++|..+..... .... -...+|++.+.|+-
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~d----vdl~~LA~~T~GfS 388 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSED----VNLETLVTTKDDLS 388 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSC----CCHHHHHHHCCSCC
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCc----CCHHHHHHhCCCCC
Confidence 222333455566554433322 2223345788888888888899988874321 1111 12566777777763
No 206
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.02 E-value=2.1e-05 Score=76.97 Aligned_cols=149 Identities=12% Similarity=0.062 Sum_probs=80.1
Q ss_pred CCceeecccchhhc--------c---------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 21 HAGFSGKEDNNQLI--------Q---------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 21 ~~~~vGre~~~~~i--------~---------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
-++++|.+...+.+ . ...+-+.|+|++|+||||+|+.+++. .... .+.+....-...
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~~- 84 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVEM- 84 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTTS-
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHHH-
Confidence 35688887766655 1 12456889999999999999999876 2222 244433221100
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc----------------hHHHHHHhcC
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID----------------FWGDVEYALL 147 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~l~ 147 (710)
. .......+...+.......+.++++|+++... ....+...+.
T Consensus 85 ---------~------------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (257)
T 1lv7_A 85 ---------F------------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 143 (257)
T ss_dssp ---------C------------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHH
T ss_pred ---------h------------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhh
Confidence 0 00011122333333334567899999984321 1122222222
Q ss_pred C--CCCCcEEEEEcCchh-hhhhcc-CCCCcceEEccCCCchhHHHHHHHHHc
Q 005181 148 D--SKKCGRIIVTTRHMN-VAKYCK-SSSSVHVHELETLPPNEAWKLFCRKAF 196 (710)
Q Consensus 148 ~--~~~~~~ilvTtR~~~-~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~ 196 (710)
. ...+..||.||.... +..... .......+.++..+.++-.+++.....
T Consensus 144 ~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~ 196 (257)
T 1lv7_A 144 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 196 (257)
T ss_dssp TCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred CcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 1 123335666665543 212111 112235778888888888888877763
No 207
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.02 E-value=4.3e-06 Score=73.77 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=61.5
Q ss_pred ceeecccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhh
Q 005181 23 GFSGKEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHR 95 (710)
Q Consensus 23 ~~vGre~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 95 (710)
+++|++..+.++ .....-|.|+|++|+|||++|+.+++.. ...-...+ +++....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~--~~~~~~~v-~~~~~~~~~------------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG--RNAQGEFV-YRELTPDNA------------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS--TTTTSCCE-EEECCTTTS-------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC--CccCCCEE-EECCCCCcc-------------
Confidence 578988888777 3455678899999999999999998762 11112234 666543221
Q ss_pred hcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCc
Q 005181 96 VANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRH 161 (710)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~ 161 (710)
.. ....+... ..-.|++|+++... ....+...+.......++|.||..
T Consensus 66 ------------~~---~~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ------------PQ---LNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ------------SC---HHHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ------------hh---hhcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 00 01111111 23468999998765 234455555444444567776654
No 208
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.01 E-value=4.1e-06 Score=77.41 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=83.5
Q ss_pred cCCCCceeEEEeecCCCCCcc---hhhhhhcccccccEEecCCCCCcc-----CcccccCcccceEEEeccccccc----
Q 005181 398 SIKDSKVRSVFLFNVDKLPDS---FMNASIANFKLMKVLDLEDAPVDY-----LPEGVGNLFNLHYLSVKNTEVKI---- 465 (710)
Q Consensus 398 ~~~~~~l~~l~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~n~~~~-----l~~~~~~l~~L~~L~l~~n~i~~---- 465 (710)
....+.++.|.+.++..+.+. .+...+...++|++|+|++|.+.. +...+...++|++|+|++|.|+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 445788889998887333332 345667788999999999999872 45556667889999999999983
Q ss_pred -cCcchhcccCCCEEEc--CCCcccc-----ccccccccccCcEEEccc
Q 005181 466 -IPKSIRNLLSLEILDL--KNTLVSE-----LPVEIRNLKKLRYLMVYR 506 (710)
Q Consensus 466 -lp~~~~~l~~L~~L~l--~~n~~~~-----~~~~~~~l~~L~~L~l~~ 506 (710)
+...+...++|++|+| ++|.++. +...+...++|++|++++
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 5666778889999999 7788764 445566778999999985
No 209
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.00 E-value=7.9e-06 Score=94.38 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=77.9
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCccc---ccC--cCcEEEEEeCCCCCHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGL---KTH--FNCRAWITVGKEYKKNDLLRTIL 90 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~---~~~--f~~~~~v~~~~~~~~~~~~~~i~ 90 (710)
-+.++||+.++.++ ......+.|+|++|+||||+|+.+++.... ... -..+++++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 45699999999887 445567889999999999999999876311 011 11344443322100
Q ss_pred HHHhhhcCCCCCccccchhHHHHHHHHHHHh-c-CCceEEEEecCCCcc---------hH-HHHHHhcCCCCCCcEEEE-
Q 005181 91 KEFHRVANQPAPVEIHDMEEMELITTLRDHL-K-DKSYMVVFDDVWKID---------FW-GDVEYALLDSKKCGRIIV- 157 (710)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~-~~~~LlvlDdv~~~~---------~~-~~~~~~l~~~~~~~~ilv- 157 (710)
. . .... +.......+...+ . +++.+|++|+++... +. ..+...+ ..+ +-.+|.
T Consensus 240 -g---~-------~~~g-~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~~-~i~~I~a 305 (854)
T 1qvr_A 240 -G---A-------KYRG-EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-ARG-ELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-HTT-CCCEEEE
T ss_pred -c---C-------ccch-HHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hCC-CeEEEEe
Confidence 0 0 0000 1111122222222 2 367899999997643 11 1122222 222 223444
Q ss_pred EcCchh--hhhhccCCCCcceEEccCCCchhHHHHHHHHH
Q 005181 158 TTRHMN--VAKYCKSSSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 158 TtR~~~--~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
||.... +...-....+...+.+++++.++..+++....
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 444322 11111122233568999999999999997553
No 210
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.00 E-value=1.5e-06 Score=80.44 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=36.3
Q ss_pred CCCCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 19 FPHAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 19 ~~~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..-++++||+.+++.+ ....+.+.|+|++|+|||++|+++++.
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456799999998887 445678899999999999999999876
No 211
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.95 E-value=0.00039 Score=70.68 Aligned_cols=164 Identities=20% Similarity=0.187 Sum_probs=88.0
Q ss_pred Cceeecccchhhc----c------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHH
Q 005181 22 AGFSGKEDNNQLI----Q------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILK 91 (710)
Q Consensus 22 ~~~vGre~~~~~i----~------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 91 (710)
++++|.+..++.+ . .....++|+|++|+||||||+.++.. ....+ .... .....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~---~~~s-g~~~~---------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI---HVTS-GPVLV---------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE---EEEE-TTTCC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEe-chHhc----------
Confidence 4578887766665 1 23467999999999999999999876 22111 1111 11100
Q ss_pred HHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCC-------------------
Q 005181 92 EFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSK------------------- 150 (710)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~------------------- 150 (710)
.. .++.. +...+ .++-++++|+++... ..+.+...+....
T Consensus 89 --------------~~---~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 89 --------------KQ---GDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp --------------SH---HHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------C
T ss_pred --------------CH---HHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCC
Confidence 00 01111 11112 234577788886643 2222222111110
Q ss_pred CCcEEEEEcCchhhhhhccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHH
Q 005181 151 KCGRIIVTTRHMNVAKYCKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAI 226 (710)
Q Consensus 151 ~~~~ilvTtR~~~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 226 (710)
.-.-+-.|++...+....... ......+++.+.++..+++.+.+... . .....+.+..|++.+.|.|-.+
T Consensus 150 ~~~li~at~~~~~Ls~~l~sR-~~l~~~Ld~~~~~~l~~iL~~~~~~~--~---~~~~~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRSR-FGIILELDFYTVKELKEIIKRAASLM--D---VEIEDAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHTT-CSEEEECCCCCHHHHHHHHHHHHHHT--T---CCBCHHHHHHHHHTSTTCHHHH
T ss_pred CeEEEEecCCcccCCHHHHHh-cCceeeCCCCCHHHHHHHHHHHHHHc--C---CCcCHHHHHHHHHhcCCChHHH
Confidence 011122344443332222211 11357899999999999998876321 1 1223467889999999998644
No 212
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=2e-06 Score=83.67 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=19.3
Q ss_pred CcccceEEEecccccccc---CcchhcccCCCEEEcCCCccccc
Q 005181 449 NLFNLHYLSVKNTEVKII---PKSIRNLLSLEILDLKNTLVSEL 489 (710)
Q Consensus 449 ~l~~L~~L~l~~n~i~~l---p~~~~~l~~L~~L~l~~n~~~~~ 489 (710)
++++|+.|+|++|.|+.+ |..+..+++|+.|+|++|.+..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 344555555555554432 23344455555555555544444
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.89 E-value=2.3e-05 Score=83.64 Aligned_cols=173 Identities=11% Similarity=0.073 Sum_probs=96.9
Q ss_pred Cceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 22 AGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 22 ~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
++++|.+..++.+ ....+.|.|+|++|+|||++|+++++. ... ..+.+++..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~---~fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGA---FFFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSS---EEEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCC---CEEEEEchH-----
Confidence 4688988887776 134567999999999999999999776 222 234444311
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-------------hHHHHHHhcCC--
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-------------FWGDVEYALLD-- 148 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~-- 148 (710)
+...+ .......+...+....++++.+|+||+++... ....+...+..
T Consensus 274 -----l~~~~------------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~ 336 (489)
T 3hu3_A 274 -----IMSKL------------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (489)
T ss_dssp -----HHTSC------------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred -----hhhhh------------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc
Confidence 11100 01111223344444445677899999994321 12233333322
Q ss_pred CCCCcEEEEEcCchh-hhhhccC-CCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC-chH
Q 005181 149 SKKCGRIIVTTRHMN-VAKYCKS-SSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL-PLA 225 (710)
Q Consensus 149 ~~~~~~ilvTtR~~~-~~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pla 225 (710)
...+..||.||.... +...... ......+.++..+.++-.+++...+.... .. ......++++.+.|+ +-.
T Consensus 337 ~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~--l~----~~~~l~~la~~t~g~s~~d 410 (489)
T 3hu3_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LA----DDVDLEQVANETHGHVGAD 410 (489)
T ss_dssp TTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC--BC----TTCCHHHHHHTCTTCCHHH
T ss_pred cCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC--Cc----chhhHHHHHHHccCCcHHH
Confidence 222335555665442 2222221 22335789999999999999998864321 11 111245677777775 444
Q ss_pred HH
Q 005181 226 IV 227 (710)
Q Consensus 226 l~ 227 (710)
+.
T Consensus 411 L~ 412 (489)
T 3hu3_A 411 LA 412 (489)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 214
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.87 E-value=7.7e-05 Score=78.88 Aligned_cols=197 Identities=11% Similarity=0.072 Sum_probs=105.9
Q ss_pred Cceeecccchhhc--------c---------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHH
Q 005181 22 AGFSGKEDNNQLI--------Q---------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKND 84 (710)
Q Consensus 22 ~~~vGre~~~~~i--------~---------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 84 (710)
++++|.+...+.+ . ...+-|.|+|++|+|||++|++++.. ... ..+.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~---~f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANV---PFFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCC---CeeeCCHHHHHHH--
Confidence 4688888776655 1 12356889999999999999999876 222 2344443322110
Q ss_pred HHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc----------------hHHHHHHhcCC
Q 005181 85 LLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID----------------FWGDVEYALLD 148 (710)
Q Consensus 85 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~l~~ 148 (710)
+ .......+...+.......+.+|++|+++... .+.++...+..
T Consensus 89 --------~------------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~ 148 (476)
T 2ce7_A 89 --------F------------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDG 148 (476)
T ss_dssp --------C------------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHH
T ss_pred --------H------------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhc
Confidence 0 00011122333444445678999999996531 12233322221
Q ss_pred --CCCCcEEEEEcCchhhhhh--ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc-
Q 005181 149 --SKKCGRIIVTTRHMNVAKY--CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP- 223 (710)
Q Consensus 149 --~~~~~~ilvTtR~~~~~~~--~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P- 223 (710)
...+..||.||..++.... .........+.+++.+.++-.+++..+..... .... .....+++.+.|+.
T Consensus 149 ~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~----v~l~~la~~t~G~sg 222 (476)
T 2ce7_A 149 FDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAED----VNLEIIAKRTPGFVG 222 (476)
T ss_dssp SCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTT----CCHHHHHHTCTTCCH
T ss_pred cCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--Ccch----hhHHHHHHhcCCCcH
Confidence 1234455666665543321 22222335788999998888888887764321 1111 11455778888876
Q ss_pred hHHHHHHh---h--hc--CCCCCHHHHHHHHHhhc
Q 005181 224 LAIVAVGG---L--LS--TKNMVVSEWKKLFDRMG 251 (710)
Q Consensus 224 lal~~~~~---~--l~--~~~~~~~~~~~~~~~~~ 251 (710)
-.|..+.. . .+ ....+.+.+..++++..
T Consensus 223 adL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 223 ADLENLVNEAALLAAREGRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHh
Confidence 22322111 1 11 12235566666666553
No 215
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=2.8e-05 Score=80.76 Aligned_cols=169 Identities=17% Similarity=0.114 Sum_probs=88.9
Q ss_pred Cceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 22 AGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 22 ~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
+++.|-++..+.| ....+-|.++||+|+|||++|+++|+. .... .+.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~---~~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAA---FIRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCE---EEEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---eEEEecchhhc--
Confidence 5688887777665 234577899999999999999999887 2222 34444332211
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCc-----------c-----hHHHHHHhcC
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKI-----------D-----FWGDVEYALL 147 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~-----------~-----~~~~~~~~l~ 147 (710)
...+.....+...+...-...++++++|+++.. + .+..++..+.
T Consensus 245 --------------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ld 304 (428)
T 4b4t_K 245 --------------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMD 304 (428)
T ss_dssp --------------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHH
T ss_pred --------------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhh
Confidence 011111122233333333457899999998531 0 1223333332
Q ss_pred --CCCCCcEEEEEcCchhhhh-h-ccCCCCcceEEccCCCc-hhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCC
Q 005181 148 --DSKKCGRIIVTTRHMNVAK-Y-CKSSSSVHVHELETLPP-NEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGL 222 (710)
Q Consensus 148 --~~~~~~~ilvTtR~~~~~~-~-~~~~~~~~~~~l~~l~~-~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 222 (710)
....+-.||.||-.++... . .+.......++++.+.+ ++-..+|..+..... .... ....++++.+.|+
T Consensus 305 g~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~--l~~~----~dl~~lA~~t~G~ 378 (428)
T 4b4t_K 305 GFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS--LAPE----ADLDSLIIRNDSL 378 (428)
T ss_dssp HSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC--BCTT----CCHHHHHHHTTTC
T ss_pred CCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC--CCcc----cCHHHHHHHCCCC
Confidence 2223334555665543222 1 22222334677765544 445566666653321 1111 1256677777776
Q ss_pred c
Q 005181 223 P 223 (710)
Q Consensus 223 P 223 (710)
-
T Consensus 379 s 379 (428)
T 4b4t_K 379 S 379 (428)
T ss_dssp C
T ss_pred C
Confidence 3
No 216
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.86 E-value=9.9e-06 Score=86.54 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=35.2
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+.++||+.+++++ ......+.|+|++|+|||++|+.++..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 35699999999987 455667889999999999999999876
No 217
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.86 E-value=2.1e-05 Score=72.23 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=56.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
...+.++|+|+.|+||||||+.++........+ .++|++ ..++...+......... . ....
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~----------~--~~~~ 96 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKD----------T--KFLK 96 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCC----------S--HHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchH----------H--HHHH
Confidence 346789999999999999999998873212222 344543 33344444333322110 0 1122
Q ss_pred HHHHHhcCCceEEEEecCCC--cchHH--HHHHhcCCC-CCCcEEEEEcCch
Q 005181 116 TLRDHLKDKSYMVVFDDVWK--IDFWG--DVEYALLDS-KKCGRIIVTTRHM 162 (710)
Q Consensus 116 ~~~~~l~~~~~LlvlDdv~~--~~~~~--~~~~~l~~~-~~~~~ilvTtR~~ 162 (710)
. +. +.-+|||||++. .+.+. .+...+... ..|..+|+||...
T Consensus 97 ~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 97 T----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp H----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred H----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 22 456899999973 33332 222222221 2456788888653
No 218
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=9.7e-06 Score=78.79 Aligned_cols=81 Identities=21% Similarity=0.169 Sum_probs=64.0
Q ss_pred hhcccccccEEecCCCCCccC---cccccCcccceEEEeccccccccCcchhccc--CCCEEEcCCCcccc-cc------
Q 005181 423 SIANFKLMKVLDLEDAPVDYL---PEGVGNLFNLHYLSVKNTEVKIIPKSIRNLL--SLEILDLKNTLVSE-LP------ 490 (710)
Q Consensus 423 ~~~~~~~L~~L~l~~n~~~~l---~~~~~~l~~L~~L~l~~n~i~~lp~~~~~l~--~L~~L~l~~n~~~~-~~------ 490 (710)
...++++|++|+|++|.++.+ |..+..+++|+.|+|++|.|+.+ ..+..+. +|++|+|++|.+.. +|
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 346789999999999999865 45667899999999999999966 3355555 99999999998753 43
Q ss_pred -ccccccccCcEEEc
Q 005181 491 -VEIRNLKKLRYLMV 504 (710)
Q Consensus 491 -~~~~~l~~L~~L~l 504 (710)
..+..+++|+.|+-
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 23677889988864
No 219
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.84 E-value=5.3e-05 Score=84.87 Aligned_cols=169 Identities=11% Similarity=0.054 Sum_probs=95.9
Q ss_pred Cceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHH
Q 005181 22 AGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKN 83 (710)
Q Consensus 22 ~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 83 (710)
+++.|-++..+.| ...++-|.++||+|+|||+||+++++. ...+ .+.++..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhH------
Confidence 4678888877666 123578999999999999999999988 3222 2344321
Q ss_pred HHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-------------hHHHHHHhcCCC-
Q 005181 84 DLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-------------FWGDVEYALLDS- 149 (710)
Q Consensus 84 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~~- 149 (710)
++.... .......+...+....+..+.+|++|+++..- ...++...+...
T Consensus 273 ----~l~sk~------------~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~ 336 (806)
T 3cf2_A 273 ----EIMSKL------------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp ----HHHSSC------------TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC
T ss_pred ----Hhhccc------------chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc
Confidence 111100 11122233444444445678999999997531 112222222211
Q ss_pred -CCCcEEEEEcCchhhhh-hcc-CCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 150 -KKCGRIIVTTRHMNVAK-YCK-SSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 150 -~~~~~ilvTtR~~~~~~-~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
..+-.||.||...+... ... .......++++..+.++-.++|..+..... .. ......+|++.+.|+-
T Consensus 337 ~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~--~~----~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LA----DDVDLEQVANETHGHV 407 (806)
T ss_dssp GGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE--EC----TTCCHHHHHHHCCSCC
T ss_pred ccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC--CC----cccCHHHHHHhcCCCC
Confidence 12224555665543322 221 123346789999999999999987753221 11 1123567778888774
No 220
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=6.6e-05 Score=74.90 Aligned_cols=134 Identities=19% Similarity=0.061 Sum_probs=81.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCc-ccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSE-GLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMEL 113 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~-~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 113 (710)
.+......++|+.|+||||+|+.+++.- ........+.++..+......+.++++.+.+....
T Consensus 15 ~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p---------------- 78 (305)
T 2gno_A 15 KSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSP---------------- 78 (305)
T ss_dssp TCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCC----------------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcc----------------
Confidence 3446788999999999999999997631 01111223444443221111122222222221100
Q ss_pred HHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCch-hhhhhccCCCCcceEEccCCCchhHHHH
Q 005181 114 ITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHM-NVAKYCKSSSSVHVHELETLPPNEAWKL 190 (710)
Q Consensus 114 ~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~-~~~~~~~~~~~~~~~~l~~l~~~ea~~l 190 (710)
..+++-++|+|+++... ..+.+...+...+..+.+|++|.++ .+....... .++++++++++..+.
T Consensus 79 -------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR----~~~f~~l~~~~i~~~ 147 (305)
T 2gno_A 79 -------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR----VFRVVVNVPKEFRDL 147 (305)
T ss_dssp -------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT----SEEEECCCCHHHHHH
T ss_pred -------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce----eEeCCCCCHHHHHHH
Confidence 12356789999998875 4555666776666677666665443 454444332 899999999999999
Q ss_pred HHHHH
Q 005181 191 FCRKA 195 (710)
Q Consensus 191 ~~~~~ 195 (710)
+.+..
T Consensus 148 L~~~~ 152 (305)
T 2gno_A 148 VKEKI 152 (305)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98876
No 221
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=2.6e-06 Score=76.56 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=62.7
Q ss_pred cccceEEeecccCCceeEEecCCCCcccEEEeccCCCce-eeeecCCc----CCCccEEEEccCC-CCCCCccccccCCC
Q 005181 575 PNLLELRLTGTYDYELFHFEAGWFPKLQKLLLWDFVAVK-SVIIEKGA----MPDIRELEIGPCP-LLMEIPIGIEHLRN 648 (710)
Q Consensus 575 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~~~~----l~~L~~L~l~~n~-~~~~~p~~~~~l~~ 648 (710)
.+|+.|++++|.++...-..+..+++|+.|+|++|...+ .--..+.. +++|+.|+|++|. ++..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999998776544456789999999999997433 21122333 4589999999997 44322245778999
Q ss_pred CcEEEEecCc
Q 005181 649 LKLLRFDCMV 658 (710)
Q Consensus 649 L~~L~l~~~~ 658 (710)
|+.|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999996
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.71 E-value=0.00013 Score=83.30 Aligned_cols=153 Identities=16% Similarity=0.202 Sum_probs=82.8
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCCccc---ccC-cCcEEEE-EeCCCCCHHHHHHHHH
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNSEGL---KTH-FNCRAWI-TVGKEYKKNDLLRTIL 90 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~~~~---~~~-f~~~~~v-~~~~~~~~~~~~~~i~ 90 (710)
-+.++||+.+++++ ......+.|+|++|+|||++|+.++..... ... ....+|. ....-
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------- 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------- 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence 35789999999887 445677899999999999999999876211 111 1222321 11110
Q ss_pred HHHhhhcCCCCCccccchhHHHHHHHHHHHh-cCCceEEEEecCCCc--------chHH--HHHHhcCCCCCCcEEEEEc
Q 005181 91 KEFHRVANQPAPVEIHDMEEMELITTLRDHL-KDKSYMVVFDDVWKI--------DFWG--DVEYALLDSKKCGRIIVTT 159 (710)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~LlvlDdv~~~--------~~~~--~~~~~l~~~~~~~~ilvTt 159 (710)
+... ...+ ........+.+.+ ..++.+|++|+++.. ...+ .+...+... ....+|.+|
T Consensus 254 --~~~~-------~~~g-~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at 322 (758)
T 1r6b_X 254 --LAGT-------KYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGST 322 (758)
T ss_dssp ---CCC-------CCSS-CHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEE
T ss_pred --hccc-------cccc-hHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEe
Confidence 0000 0000 1122223333333 345789999999865 1222 122222222 233555555
Q ss_pred Cchhhhhhcc----CCCCcceEEccCCCchhHHHHHHHHH
Q 005181 160 RHMNVAKYCK----SSSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 160 R~~~~~~~~~----~~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
.......... ...+...+.+++.+.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4433211110 11223578999999999999887664
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.68 E-value=4.6e-05 Score=76.99 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=39.8
Q ss_pred Cceeecccchhhc-----c---------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 22 AGFSGKEDNNQLI-----Q---------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~---------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
..++|.+..++.+ . .....+.|+|++|+|||++|+.+++. ....-..++.+.++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEY 86 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccc
Confidence 4678988887776 1 11358999999999999999999886 3222234566766544
No 224
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.67 E-value=3e-05 Score=68.08 Aligned_cols=39 Identities=26% Similarity=0.196 Sum_probs=30.0
Q ss_pred ceeecccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 23 GFSGKEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 23 ~~vGre~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+++|++..++++ .....-|.|+|++|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 578988888776 334556889999999999999999876
No 225
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.66 E-value=0.00014 Score=71.41 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=37.1
Q ss_pred Cceeecccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 22 AGFSGKEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 22 ~~~vGre~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
++++|++..+..+ ......|.|+|++|+|||++|+.+++.. ...-...+.++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~--~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS--TTTTSCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc--CccCCCeEEEecCCC
Confidence 4588988877665 3445678899999999999999998762 222123566776653
No 226
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.64 E-value=1.7e-05 Score=78.31 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=33.1
Q ss_pred CCCceeecccchhhc----c-------------CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 20 PHAGFSGKEDNNQLI----Q-------------SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 20 ~~~~~vGre~~~~~i----~-------------~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.-++++|.+...+.+ . ...+.+.|+|++|+|||++|+++++.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 346799998887776 1 22345889999999999999999876
No 227
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.63 E-value=2.5e-05 Score=73.25 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEe
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITV 76 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (710)
+.+.|+|++|+|||++|+++++. .......++|+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 78999999999999999999887 3333345677654
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.55 E-value=0.00011 Score=64.86 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
....++|+|+.|+|||||++.++.... ..-..++|+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcHHH
Confidence 567899999999999999999988632 2212367776543
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.53 E-value=5.6e-05 Score=86.27 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=35.4
Q ss_pred CCceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 21 HAGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+.++||+.+++++ ......+.|+|++|+|||++|+.+++.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 35699999999988 455667899999999999999999876
No 230
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.53 E-value=0.00026 Score=71.32 Aligned_cols=41 Identities=20% Similarity=0.407 Sum_probs=32.9
Q ss_pred CCceeecccchhhc-----c--------------CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 21 HAGFSGKEDNNQLI-----Q--------------SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 21 ~~~~vGre~~~~~i-----~--------------~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...++|++...+.+ . ...+.+.|+|++|+|||++|+.+++.
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34688988887766 1 23567889999999999999999876
No 231
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.51 E-value=0.00019 Score=69.89 Aligned_cols=151 Identities=10% Similarity=0.049 Sum_probs=76.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHH
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRD 119 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (710)
-++|+|++|+||||||+.++... . ...+.+... ++..... ......+...+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~~----------~~~~~~~------------~~~~~~i~~~~~~ 103 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS----------DFVEMFV------------GVGAARVRDLFET 103 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH----------HHHHSCT------------THHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeHH----------HHHHHHh------------hHHHHHHHHHHHH
Confidence 48999999999999999998762 2 233444321 1111000 0000111222222
Q ss_pred HhcCCceEEEEecCCCcc----------------hHHHHHHhcCCC--CCCcEEEEEcCchhhhhhcc--CCCCcceEEc
Q 005181 120 HLKDKSYMVVFDDVWKID----------------FWGDVEYALLDS--KKCGRIIVTTRHMNVAKYCK--SSSSVHVHEL 179 (710)
Q Consensus 120 ~l~~~~~LlvlDdv~~~~----------------~~~~~~~~l~~~--~~~~~ilvTtR~~~~~~~~~--~~~~~~~~~l 179 (710)
.-.....++++|+++... ....+...+... .....++.||..++...... .......+.+
T Consensus 104 ~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i 183 (254)
T 1ixz_A 104 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 183 (254)
T ss_dssp HTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEEC
T ss_pred HHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEee
Confidence 222356899999995321 112222222211 12223444666554433221 1123467899
Q ss_pred cCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCc
Q 005181 180 ETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLP 223 (710)
Q Consensus 180 ~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 223 (710)
+..+.++-.+++....... +.... .....+++.+.|+-
T Consensus 184 ~~p~~~~r~~il~~~~~~~--~~~~~----~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 184 DAPDVKGREQILRIHARGK--PLAED----VDLALLAKRTPGFV 221 (254)
T ss_dssp CSCCHHHHHHHHHHHHTTS--CBCTT----CCHHHHHHTCTTCC
T ss_pred CCcCHHHHHHHHHHHHcCC--CCCcc----cCHHHHHHHcCCCC
Confidence 9999998888888776321 11111 12445666777654
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.50 E-value=0.00032 Score=70.20 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=38.8
Q ss_pred Cceeecccchhhc-------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 22 AGFSGKEDNNQLI-------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 22 ~~~vGre~~~~~i-------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
++++|++..+..+ ......|.|+|++|+|||++|+.+++.. ...-...+.+++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~--~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS--ARSDRPLVTLNCAAL 64 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS--SCSSSCCCEEECSSC
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC--cccCCCeEEEeCCCC
Confidence 4688988887776 3456678899999999999999998742 111123455666543
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.44 E-value=0.00086 Score=66.67 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..++.+.|+||+|+|||++|+++++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578899999999999999999887
No 234
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.43 E-value=0.00068 Score=72.14 Aligned_cols=197 Identities=11% Similarity=0.078 Sum_probs=103.7
Q ss_pred CCCCCceeecccchhhc--------c---------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC
Q 005181 18 NFPHAGFSGKEDNNQLI--------Q---------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY 80 (710)
Q Consensus 18 ~~~~~~~vGre~~~~~i--------~---------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~ 80 (710)
...-++++|.+.....+ . .-.+-+.|+|++|+||||||+.++... . ...+.++.+.-.
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~---~~~i~i~g~~~~ 101 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGSDFV 101 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--T---CCEEEEEGGGGT
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C---CCEEEEehhHHH
Confidence 34456789988776655 1 113458999999999999999998762 2 234555443211
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcC----CceEEEEecCCCcc----------------hHH
Q 005181 81 KKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKD----KSYMVVFDDVWKID----------------FWG 140 (710)
Q Consensus 81 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~LlvlDdv~~~~----------------~~~ 140 (710)
.. ... .....++..++. .+.++++|+++... .+.
T Consensus 102 ~~----------------------~~g----~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~ 155 (499)
T 2dhr_A 102 EM----------------------FVG----VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN 155 (499)
T ss_dssp SS----------------------CTT----HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH
T ss_pred Hh----------------------hhh----hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH
Confidence 00 000 112233333332 35799999996431 112
Q ss_pred HHHHhcCCC--CCCcEEEEEcCchhhhhh--ccCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHH
Q 005181 141 DVEYALLDS--KKCGRIIVTTRHMNVAKY--CKSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDIL 216 (710)
Q Consensus 141 ~~~~~l~~~--~~~~~ilvTtR~~~~~~~--~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 216 (710)
++...+... ..+..++.||..++.... .........+.++..+.++-.+++..++... +.... .....++
T Consensus 156 ~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~--~l~~d----v~l~~lA 229 (499)
T 2dhr_A 156 QLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAED----VDLALLA 229 (499)
T ss_dssp HHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS--CCCCS----STTHHHH
T ss_pred HHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC--CCChH----HHHHHHH
Confidence 333333221 223345556666554322 1112234688999999998889988775321 11111 1245567
Q ss_pred HHhCCCc-hHHHHH----Hhh-hcC--CCCCHHHHHHHHHhhc
Q 005181 217 AKCGGLP-LAIVAV----GGL-LST--KNMVVSEWKKLFDRMG 251 (710)
Q Consensus 217 ~~~~g~P-lal~~~----~~~-l~~--~~~~~~~~~~~~~~~~ 251 (710)
..+.|+. -.|.-+ +.+ .+. ...+.++...++++..
T Consensus 230 ~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 230 KRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVM 272 (499)
T ss_dssp TTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHT
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Confidence 7777775 333222 111 111 2235566666666553
No 235
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.40 E-value=0.00036 Score=68.97 Aligned_cols=172 Identities=10% Similarity=0.090 Sum_probs=88.1
Q ss_pred CCCCceeecccchhhc-------c----------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC
Q 005181 19 FPHAGFSGKEDNNQLI-------Q----------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK 81 (710)
Q Consensus 19 ~~~~~~vGre~~~~~i-------~----------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (710)
..-++++|.+.....+ . .-.+-++|+|++|+||||||+.++... . ...+.+...
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~---- 107 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS---- 107 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH----
Confidence 3356788887765554 0 112338999999999999999998762 2 234444321
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCc------------c----hHHHHHHh
Q 005181 82 KNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKI------------D----FWGDVEYA 145 (710)
Q Consensus 82 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~------------~----~~~~~~~~ 145 (710)
++..... ......+...+...-...+.++++|+++.. + .+..+...
T Consensus 108 ------~~~~~~~------------~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 169 (278)
T 1iy2_A 108 ------DFVEMFV------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 169 (278)
T ss_dssp ------HHHHSTT------------THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHH
T ss_pred ------HHHHHHh------------hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHH
Confidence 1111000 000011122222222245689999998532 1 11222222
Q ss_pred cCCCC--CCcEEEEEcCchhhhhhc--cCCCCcceEEccCCCchhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCC
Q 005181 146 LLDSK--KCGRIIVTTRHMNVAKYC--KSSSSVHVHELETLPPNEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGG 221 (710)
Q Consensus 146 l~~~~--~~~~ilvTtR~~~~~~~~--~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 221 (710)
+.... ....++.||..++..... ........+.+++.+.++-.+++...+... +... ......+++.+.|
T Consensus 170 lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~~----~~~~~~la~~~~G 243 (278)
T 1iy2_A 170 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAE----DVDLALLAKRTPG 243 (278)
T ss_dssp HTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS--CBCT----TCCHHHHHHTCTT
T ss_pred HhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC--CCCc----ccCHHHHHHHcCC
Confidence 22221 122344455555433221 112233688999999998889988776321 1111 1124456677777
Q ss_pred Cc
Q 005181 222 LP 223 (710)
Q Consensus 222 ~P 223 (710)
+.
T Consensus 244 ~~ 245 (278)
T 1iy2_A 244 FV 245 (278)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 236
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.35 E-value=0.0012 Score=64.76 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=69.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHH
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRD 119 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (710)
-++|+|++|+||||||+.++... .. ..+++....-.+. ... ........+-+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~--~~---~~i~i~g~~l~~~----------------------~~~-~~~~~i~~vf~ 97 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANES--GL---NFISVKGPELLNM----------------------YVG-ESERAVRQVFQ 97 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHT--TC---EEEEEETTTTCSS----------------------TTH-HHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHc--CC---CEEEEEcHHHHhh----------------------hhh-HHHHHHHHHHH
Confidence 39999999999999999998752 11 3445443221110 000 00011111222
Q ss_pred H-hcCCceEEEEecCCCcc-------------hHHHHHHhcC--CCCCCcEEEEEcCchhhhhhc--cCCCCcceEEccC
Q 005181 120 H-LKDKSYMVVFDDVWKID-------------FWGDVEYALL--DSKKCGRIIVTTRHMNVAKYC--KSSSSVHVHELET 181 (710)
Q Consensus 120 ~-l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~--~~~~~~~ilvTtR~~~~~~~~--~~~~~~~~~~l~~ 181 (710)
. -...+.++++|+++... ....+...+. ......-++.+|..+++.... ........+.++.
T Consensus 98 ~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~ 177 (274)
T 2x8a_A 98 RAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGL 177 (274)
T ss_dssp HHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCS
T ss_pred HHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCC
Confidence 2 13457899999997531 1112222221 112233444566665544332 1223346788999
Q ss_pred CCchhHHHHHHHHHc
Q 005181 182 LPPNEAWKLFCRKAF 196 (710)
Q Consensus 182 l~~~ea~~l~~~~~~ 196 (710)
.+.++-.++|.....
T Consensus 178 P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 178 PPPADRLAILKTITK 192 (274)
T ss_dssp CCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999988753
No 237
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.33 E-value=0.0018 Score=68.90 Aligned_cols=92 Identities=14% Similarity=0.014 Sum_probs=54.7
Q ss_pred eEEEEecCCCcc--hHHHHHHhcCCCCCCcEEE-EE---------cC----chhhhhhccCCCCcceEEccCCCchhHHH
Q 005181 126 YMVVFDDVWKID--FWGDVEYALLDSKKCGRII-VT---------TR----HMNVAKYCKSSSSVHVHELETLPPNEAWK 189 (710)
Q Consensus 126 ~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~il-vT---------tR----~~~~~~~~~~~~~~~~~~l~~l~~~ea~~ 189 (710)
-++++|+++... ..+.+...+...... .+| .| |. ...+..... ++...+.+++++.++..+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~--sR~~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLL--DRVMIIRTMLYTPQEMKQ 373 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHH--TTEEEEECCCCCHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHH--hhcceeeCCCCCHHHHHH
Confidence 389999998775 455666666655444 344 45 32 111111111 122567999999999999
Q ss_pred HHHHHHcCCCCCCCCchhHHHHHHHHHHHh-CCCchH
Q 005181 190 LFCRKAFGPSSGGSCPSELRELSRDILAKC-GGLPLA 225 (710)
Q Consensus 190 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Pla 225 (710)
++...+.... .. -..+.+..|+..+ .|.|..
T Consensus 374 iL~~~~~~~~--~~---~~~~~~~~i~~~a~~g~~r~ 405 (456)
T 2c9o_A 374 IIKIRAQTEG--IN---ISEEALNHLGEIGTKTTLRY 405 (456)
T ss_dssp HHHHHHHHHT--CC---BCHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHhC--CC---CCHHHHHHHHHHccCCCHHH
Confidence 9988763111 11 1235567777777 677653
No 238
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.32 E-value=0.00033 Score=79.84 Aligned_cols=146 Identities=14% Similarity=0.164 Sum_probs=79.5
Q ss_pred Cceeecccchhhc-------c-------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHH
Q 005181 22 AGFSGKEDNNQLI-------Q-------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLR 87 (710)
Q Consensus 22 ~~~vGre~~~~~i-------~-------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 87 (710)
..++|.+..++.+ . .....+.++|++|+|||++|+++++. ....-...+.++++........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~~-- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHST-- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccccc--
Confidence 4688888877665 1 11237999999999999999999886 3222334566766543221000
Q ss_pred HHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc--hHHHHHHhcCC-----------CCCCcE
Q 005181 88 TILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID--FWGDVEYALLD-----------SKKCGR 154 (710)
Q Consensus 88 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~--~~~~~~~~l~~-----------~~~~~~ 154 (710)
. ...+...++. ...-+|+||+++... ....+...+.. ......
T Consensus 567 ----------------~-----~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 622 (758)
T 3pxi_A 567 ----------------S-----GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTI 622 (758)
T ss_dssp ----------------C--------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCE
T ss_pred ----------------c-----cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeE
Confidence 0 0011122221 234589999998764 23333333322 113447
Q ss_pred EEEEcCchh-----h----hhhccC---CCCcceEEccCCCchhHHHHHHHHH
Q 005181 155 IIVTTRHMN-----V----AKYCKS---SSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 155 ilvTtR~~~-----~----~~~~~~---~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
||.||.... + ...... .....++.+.+++.++..+++....
T Consensus 623 iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 623 LIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred EEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 777876210 0 000100 1122588899999988888877664
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.16 E-value=0.0011 Score=62.76 Aligned_cols=92 Identities=17% Similarity=0.107 Sum_probs=52.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhh-------hcCCCCCccccchh
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHR-------VANQPAPVEIHDME 109 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~~~ 109 (710)
...+++|.|++|+||||+|.+++. ..-..++|+......+...+. .+...... ........ ...+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 90 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPS--DFKE 90 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCT--TTSH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecC--CHHH
Confidence 356899999999999999999987 122468888876644544333 23222111 00000000 1111
Q ss_pred HHHHHHHHHHHhcCCceEEEEecCCCc
Q 005181 110 EMELITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 110 ~~~~~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
.......++..+..+.-++|+|.....
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 123444555555445679999998643
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.12 E-value=0.00047 Score=74.89 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=29.5
Q ss_pred ceeecccchhhc-----------cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 23 GFSGKEDNNQLI-----------QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 23 ~~vGre~~~~~i-----------~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+++|-+.....+ ......++|+|++|+||||+|+.++..
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 366666554444 223568999999999999999999876
No 241
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.04 E-value=0.0011 Score=60.50 Aligned_cols=123 Identities=22% Similarity=0.097 Sum_probs=70.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhc---CCCCCccccc-----h
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVA---NQPAPVEIHD-----M 108 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~-----~ 108 (710)
..+.|.|++..|.||||+|...+-+ .-++--.|.++.+.... ...-...++..+.... +....-...+ .
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTA 103 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHH
Confidence 4567778888889999999998877 44444567777554421 1112223333332100 0000000000 1
Q ss_pred hHHHHHHHHHHHhcCCc-eEEEEecCCC-----cchHHHHHHhcCCCCCCcEEEEEcCch
Q 005181 109 EEMELITTLRDHLKDKS-YMVVFDDVWK-----IDFWGDVEYALLDSKKCGRIIVTTRHM 162 (710)
Q Consensus 109 ~~~~~~~~~~~~l~~~~-~LlvlDdv~~-----~~~~~~~~~~l~~~~~~~~ilvTtR~~ 162 (710)
.........++.+.+.+ =|||||++.. .-+.+++...+...+....+|+|+|..
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 11234445556665544 4999999843 235566777777777777899999985
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.04 E-value=0.0011 Score=75.54 Aligned_cols=149 Identities=11% Similarity=0.067 Sum_probs=81.9
Q ss_pred CCceeecccchhhc------------------cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCH
Q 005181 21 HAGFSGKEDNNQLI------------------QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKK 82 (710)
Q Consensus 21 ~~~~vGre~~~~~i------------------~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (710)
-++++|.+..++.+ ....+.|.|+|++|+||||+|+.++.. .... .+.++...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~---~i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCE---EEEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCc---EEEEEchH----
Confidence 35689988888876 133467999999999999999999876 3222 24443211
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHhcCCceEEEEecCCCcc-------------hHHHHHHhcCCC
Q 005181 83 NDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKID-------------FWGDVEYALLDS 149 (710)
Q Consensus 83 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~~-------------~~~~~~~~l~~~ 149 (710)
+... ........+...+.........++++|+++... ....+...+...
T Consensus 274 ----------l~~~--------~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~ 335 (806)
T 1ypw_A 274 ----------IMSK--------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL 335 (806)
T ss_dssp ----------HSSS--------STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSS
T ss_pred ----------hhhh--------hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhh
Confidence 0000 000011122223333334467899999995321 112233332221
Q ss_pred --CCCcEEEEEcCchhhh-hhccC-CCCcceEEccCCCchhHHHHHHHHHc
Q 005181 150 --KKCGRIIVTTRHMNVA-KYCKS-SSSVHVHELETLPPNEAWKLFCRKAF 196 (710)
Q Consensus 150 --~~~~~ilvTtR~~~~~-~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~~~ 196 (710)
..+..+|.||..+... ..... ......+.+...+.++-.+++...+.
T Consensus 336 ~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred cccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 2233555566554322 11111 12225678888899998899887753
No 243
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.03 E-value=0.00052 Score=67.64 Aligned_cols=70 Identities=17% Similarity=0.272 Sum_probs=46.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEe--CCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITV--GKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
.+++.|+|++|+|||+||.+++.. ....++|++. ....+. ...+.+...+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-----------------------~~~~le~~l~ 174 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-----------------------YNTDFNVFVD 174 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-----------------------CBCCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-----------------------hhcCHHHHHH
Confidence 356789999999999999999864 1224577777 222000 0023345566
Q ss_pred HHHHHhcCCceEEEEecCCCc
Q 005181 116 TLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 116 ~~~~~l~~~~~LlvlDdv~~~ 136 (710)
.+.+.+.+.+ ++|+|++...
T Consensus 175 ~i~~~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 175 DIARAMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHHHHHCS-EEEEECCTTT
T ss_pred HHHHHHhhCC-EEEEeccccc
Confidence 6666666666 9999999654
No 244
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.92 E-value=0.00033 Score=78.54 Aligned_cols=131 Identities=13% Similarity=0.135 Sum_probs=66.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
.+-|.++||+|.|||.+|++++... . .-|+.++. .+++..... .....+.+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~--~-----~~f~~v~~--------~~l~s~~vG------------ese~~vr~lF 563 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC--Q-----ANFISIKG--------PELLTMWFG------------ESEANVREIF 563 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT--T-----CEEEECCH--------HHHHTTTCS------------SCHHHHHHHH
T ss_pred CceEEEecCCCCCchHHHHHHHHHh--C-----CceEEecc--------chhhccccc------------hHHHHHHHHH
Confidence 4568899999999999999999872 2 22333321 111111111 1112333333
Q ss_pred HHHhcCCceEEEEecCCCcc----------------hHHHHHHhcCCCCCCc-EEEE-EcCchh-hhhh-ccCCCCcceE
Q 005181 118 RDHLKDKSYMVVFDDVWKID----------------FWGDVEYALLDSKKCG-RIIV-TTRHMN-VAKY-CKSSSSVHVH 177 (710)
Q Consensus 118 ~~~l~~~~~LlvlDdv~~~~----------------~~~~~~~~l~~~~~~~-~ilv-TtR~~~-~~~~-~~~~~~~~~~ 177 (710)
...-+..+.+|++|+++..- ...+++..+....... .+++ ||-.++ +-.. .+.......+
T Consensus 564 ~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i 643 (806)
T 3cf2_A 564 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643 (806)
T ss_dssp HHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEE
T ss_pred HHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEE
Confidence 33334578999999997531 1223333333222222 3333 443332 2222 2222344788
Q ss_pred EccCCCchhHHHHHHHHH
Q 005181 178 ELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 178 ~l~~l~~~ea~~l~~~~~ 195 (710)
.++..+.++-.++|..+.
T Consensus 644 ~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 644 YIPLPDEKSRVAILKANL 661 (806)
T ss_dssp EC-----CHHHHTTTTTS
T ss_pred EECCcCHHHHHHHHHHHh
Confidence 888888877778887665
No 245
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.85 E-value=0.00057 Score=62.60 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=57.2
Q ss_pred hhhhhhcccccccEEecCCC-CCc-----cCcccccCcccceEEEecccccc-----ccCcchhcccCCCEEEcCCCccc
Q 005181 419 FMNASIANFKLMKVLDLEDA-PVD-----YLPEGVGNLFNLHYLSVKNTEVK-----IIPKSIRNLLSLEILDLKNTLVS 487 (710)
Q Consensus 419 ~~~~~~~~~~~L~~L~l~~n-~~~-----~l~~~~~~l~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~~ 487 (710)
.+...+.+-+.|+.|+|++| .+. .+-..+..-+.|+.|+|++|.|. .+.+.+..-+.|++|+|++|.|+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455666778888888875 665 23455666677888888888876 34444555677888888888775
Q ss_pred c-----ccccccccccCcEEEcc
Q 005181 488 E-----LPVEIRNLKKLRYLMVY 505 (710)
Q Consensus 488 ~-----~~~~~~~l~~L~~L~l~ 505 (710)
. +-..+..-+.|++|+|+
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECC
T ss_pred HHHHHHHHHHHhhCCceeEEECC
Confidence 3 23344555567777776
No 246
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.82 E-value=0.0016 Score=66.12 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=33.1
Q ss_pred CCceeecccchhhc---cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 21 HAGFSGKEDNNQLI---QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 21 ~~~~vGre~~~~~i---~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...++|++..++.+ ....+.+.|+|++|+|||++|+.+++.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred ccceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35789999888777 112357889999999999999999875
No 247
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.72 E-value=0.0026 Score=64.35 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=55.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
.+++.|.|++|+||||||.+++... ...-..++|++........ .+++++...... ......+.++....+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l--~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSL--LISQPDHGEQALEIV 131 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGC--EEECCSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhh--hhhhccCHHHHHHHH
Confidence 4799999999999999999998763 2223457898877666543 444554322110 011122344555555
Q ss_pred HHHhc-CCceEEEEecCCCc
Q 005181 118 RDHLK-DKSYMVVFDDVWKI 136 (710)
Q Consensus 118 ~~~l~-~~~~LlvlDdv~~~ 136 (710)
...++ .+.-++|+|.+...
T Consensus 132 ~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHHTSCCSEEEEECTTTC
T ss_pred HHHhhhcCCCeEEehHhhhh
Confidence 55554 34458888987543
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.62 E-value=0.0062 Score=69.43 Aligned_cols=53 Identities=15% Similarity=0.178 Sum_probs=37.1
Q ss_pred CCceeecccchhhc-------c-------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 21 HAGFSGKEDNNQLI-------Q-------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 21 ~~~~vGre~~~~~i-------~-------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
...++|.+..++.+ . .....+.++|++|+|||++|+.+++. .. ...+.++++.
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~ 523 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSE 523 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGG
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechh
Confidence 34578888777665 1 12347999999999999999999876 21 2345555544
No 249
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.59 E-value=0.0038 Score=59.60 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
..+++|.|++|+||||++++++... ...-..++|+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEccc
Confidence 4689999999999999999998652 22223577776543
No 250
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.58 E-value=0.018 Score=58.58 Aligned_cols=156 Identities=8% Similarity=-0.096 Sum_probs=97.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
.-.++..++|+.|.||++.+.+++.... ...|+....+......+. .++.+
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~----------------------------~~l~~ 66 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDW----------------------------NAIFS 66 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCH----------------------------HHHHH
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCH----------------------------HHHHH
Confidence 3467899999999999999999877531 223432111222222121 22222
Q ss_pred HHHH-HhcCCceEEEEecCCC-c--chHHHHHHhcCCCCCCcEEEEEcCc-------hhhhhhccCCCCcceEEccCCCc
Q 005181 116 TLRD-HLKDKSYMVVFDDVWK-I--DFWGDVEYALLDSKKCGRIIVTTRH-------MNVAKYCKSSSSVHVHELETLPP 184 (710)
Q Consensus 116 ~~~~-~l~~~~~LlvlDdv~~-~--~~~~~~~~~l~~~~~~~~ilvTtR~-------~~~~~~~~~~~~~~~~~l~~l~~ 184 (710)
.+.. -+-+.+-++|+|+++. . +..+.+...+...+.++.+|+++-. ..+....... ..+++..+++.
T Consensus 67 ~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr--~~~~~~~~l~~ 144 (343)
T 1jr3_D 67 LCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANR--SVQVTCQTPEQ 144 (343)
T ss_dssp HHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTT--CEEEEECCCCT
T ss_pred HhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhC--ceEEEeeCCCH
Confidence 2221 2235566888999976 4 4567788788777777777765532 2344443332 26899999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHhCCCchHHH
Q 005181 185 NEAWKLFCRKAFGPSSGGSCPSELRELSRDILAKCGGLPLAIV 227 (710)
Q Consensus 185 ~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 227 (710)
.+....+.+.+.... ..-.++.+..+++.++|...++.
T Consensus 145 ~~l~~~l~~~~~~~g-----~~i~~~a~~~l~~~~~gdl~~~~ 182 (343)
T 1jr3_D 145 AQLPRWVAARAKQLN-----LELDDAANQVLCYCYEGNLLALA 182 (343)
T ss_dssp THHHHHHHHHHHHTT-----CEECHHHHHHHHHSSTTCHHHHH
T ss_pred HHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhchHHHHHH
Confidence 999988888763221 12234678889999999876653
No 251
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.56 E-value=0.0056 Score=70.57 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=38.2
Q ss_pred Cceeecccchhhc-------c-------CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 22 AGFSGKEDNNQLI-------Q-------SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 22 ~~~vGre~~~~~i-------~-------~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
..++|.+..++.+ . .....+.|+|++|+|||++|+.+++. ....-...+.++++..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEY 627 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTC
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhc
Confidence 3578888877666 1 11258999999999999999999876 2222234566665544
No 252
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.47 E-value=0.00095 Score=62.79 Aligned_cols=115 Identities=13% Similarity=0.049 Sum_probs=64.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELIT 115 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (710)
....++.++|+.|+||||++.+++.+ ...+...++.+..... .+ ....++.+++... .. .......++.+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~----~~-~~~~~~~~i~~ 79 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSL----PS-VEVESAPEILN 79 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSS----CC-EEESSTHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCc----cc-cccCCHHHHHH
Confidence 44578899999999999999999887 3333334555543322 11 1122333322111 11 11122345566
Q ss_pred HHHHHhcCCc-eEEEEecCCCcc--hHHHHHHhcCCCCCCcEEEEEcCchh
Q 005181 116 TLRDHLKDKS-YMVVFDDVWKID--FWGDVEYALLDSKKCGRIIVTTRHMN 163 (710)
Q Consensus 116 ~~~~~l~~~~-~LlvlDdv~~~~--~~~~~~~~l~~~~~~~~ilvTtR~~~ 163 (710)
.+.+.+.+.+ -++|+|.+.... .++.+. .+.+. |-.||+|-+..+
T Consensus 80 ~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~~--gi~Vil~Gl~~d 127 (223)
T 2b8t_A 80 YIMSNSFNDETKVIGIDEVQFFDDRICEVAN-ILAEN--GFVVIISGLDKN 127 (223)
T ss_dssp HHHSTTSCTTCCEEEECSGGGSCTHHHHHHH-HHHHT--TCEEEEECCSBC
T ss_pred HHHHHhhCCCCCEEEEecCccCcHHHHHHHH-HHHhC--CCeEEEEecccc
Confidence 6666555444 499999997653 333332 22222 567999998653
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.44 E-value=0.005 Score=62.77 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=54.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTL 117 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (710)
.+++.|+|++|+||||+|.+++... ...-..++|++.....+.. .++.++.....- ......+.+++.+.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l--~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDEL--LVSQPDNGEQALEIM 144 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGC--EEECCSSHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHc--eeecCCcHHHHHHHH
Confidence 4688999999999999999998763 2223478999988766543 233333211100 001112345566666
Q ss_pred HHHhcC-CceEEEEecCCC
Q 005181 118 RDHLKD-KSYMVVFDDVWK 135 (710)
Q Consensus 118 ~~~l~~-~~~LlvlDdv~~ 135 (710)
....+. ..-+||+|.+..
T Consensus 145 ~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHTTTCCSEEEEECTTT
T ss_pred HHHHhcCCCCEEEEeChHH
Confidence 655543 345899999854
No 254
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.41 E-value=0.0046 Score=59.42 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCccccc----CcCcEEEEEeCCCCCHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKT----HFNCRAWITVGKEYKKN 83 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~----~f~~~~~v~~~~~~~~~ 83 (710)
...+++|.|++|+||||++.+++....... .-..++|+.........
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~ 73 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPE 73 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHH
Confidence 357899999999999999999986311111 13578898876654443
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.35 E-value=0.0043 Score=63.08 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=52.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
..+++.|.|++|+||||+|.+++... ...-..++|++.....+.. .+..++..... .......+.+++.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~--l~i~~~~~~e~~~~~ 132 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDN--LLCSQPDTGEQALEI 132 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGG--CEEECCSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHH-----HHHHcCCChhh--eeeeCCCCHHHHHHH
Confidence 35789999999999999999998763 2223468999987776643 13333321100 000011123344444
Q ss_pred HHHHhc-CCceEEEEecCCC
Q 005181 117 LRDHLK-DKSYMVVFDDVWK 135 (710)
Q Consensus 117 ~~~~l~-~~~~LlvlDdv~~ 135 (710)
++...+ .+.-++|+|.+..
T Consensus 133 ~~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHHTCCSEEEEECGGG
T ss_pred HHHHHhccCCCEEEEcCHHH
Confidence 443332 3445888998743
No 256
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.30 E-value=0.0032 Score=62.93 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEe
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITV 76 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (710)
.+.+.|+|++|+|||+||.++++.... .....++++.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 578999999999999999999987320 22335666654
No 257
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.25 E-value=0.0059 Score=52.06 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=40.1
Q ss_pred cEEecCCCCCc--cCcccccCcccceEEEeccccccccCcc-hhcccCCCEEEcCCCcc
Q 005181 431 KVLDLEDAPVD--YLPEGVGNLFNLHYLSVKNTEVKIIPKS-IRNLLSLEILDLKNTLV 486 (710)
Q Consensus 431 ~~L~l~~n~~~--~l~~~~~~l~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~ 486 (710)
..++.+++.++ .+|..+ .++|+.|+|++|.|+.+|.. |..+++|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36778888887 777644 24688888888888877766 67788888888887754
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.24 E-value=0.0067 Score=61.57 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
..+++.|.|++|+||||||.+++... ...-..++|++........ .++.++...... ......+.++..+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l--~i~~~~~~e~~l~~ 130 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSL--LVSQPDTGEQALEI 130 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGC--EEECCSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHe--EEecCCCHHHHHHH
Confidence 35789999999999999999998662 2233468999887766542 233333211100 00111233455555
Q ss_pred HHHHhcC-CceEEEEecCCC
Q 005181 117 LRDHLKD-KSYMVVFDDVWK 135 (710)
Q Consensus 117 ~~~~l~~-~~~LlvlDdv~~ 135 (710)
+....+. +.-++|+|.+..
T Consensus 131 ~~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 131 ADMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHHTTTCCSEEEEECGGG
T ss_pred HHHHHhcCCCCEEEEcChHh
Confidence 5544443 456899999754
No 259
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.21 E-value=0.037 Score=57.51 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEe
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITV 76 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (710)
....+|.++|++|+||||++.+++... ...-..++.+.+
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l--~~~G~kVllv~~ 136 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYF--QKRGYKVGVVCS 136 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEEC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHH--HHCCCeEEEEeC
Confidence 347899999999999999999998763 222234455544
No 260
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.14 E-value=0.0082 Score=60.51 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=37.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCccccc----CcCcEEEEEeCCCCCHHHHHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKT----HFNCRAWITVGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (710)
.+++.|+|++|+||||+|.+++....... .-..++|++.....+.+.+. +++..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHh
Confidence 47899999999999999999876521111 12468999888766555443 334443
No 261
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.14 E-value=0.0094 Score=58.49 Aligned_cols=90 Identities=9% Similarity=0.023 Sum_probs=53.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHH-HHHHH
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMEL-ITTLR 118 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 118 (710)
++-|.|++|+||||||.+++........-..++|++........ .+++++.....-... ...+.++. .+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~--~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHT--PVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEE--ECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEE--cCCCHHHHHHHHHH
Confidence 68999999999999999987763221113468999888777653 255554332110001 11133344 33333
Q ss_pred HH--hc-CCceEEEEecCCCc
Q 005181 119 DH--LK-DKSYMVVFDDVWKI 136 (710)
Q Consensus 119 ~~--l~-~~~~LlvlDdv~~~ 136 (710)
.. ++ .+.-++|+|-+...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 32 33 45689999998654
No 262
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.07 E-value=0.0047 Score=56.46 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=76.5
Q ss_pred CCCceeEEEeecCCCCCc---chhhhhhcccccccEEecCCCCCc-----cCcccccCcccceEEEecccccc-----cc
Q 005181 400 KDSKVRSVFLFNVDKLPD---SFMNASIANFKLMKVLDLEDAPVD-----YLPEGVGNLFNLHYLSVKNTEVK-----II 466 (710)
Q Consensus 400 ~~~~l~~l~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~n~~~-----~l~~~~~~l~~L~~L~l~~n~i~-----~l 466 (710)
..+.|+.|.+.+++.+.+ ..+...+..-+.|+.|+|++|.+. .+...+..-+.|+.|+|++|.|+ .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 456777888766534333 235567778889999999999987 34455666678999999999998 34
Q ss_pred CcchhcccCCCEEEcCCC---ccc-----cccccccccccCcEEEccc
Q 005181 467 PKSIRNLLSLEILDLKNT---LVS-----ELPVEIRNLKKLRYLMVYR 506 (710)
Q Consensus 467 p~~~~~l~~L~~L~l~~n---~~~-----~~~~~~~~l~~L~~L~l~~ 506 (710)
.+.+..-+.|++|+|++| .++ .+...+..-+.|+.|+++.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 455666678999999865 343 2334566677888888873
No 263
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.93 E-value=0.0009 Score=61.27 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+++.++|+.|+||||++.+++.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999887765
No 264
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.92 E-value=0.015 Score=57.68 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=50.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchhHHHH-
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDMEEMEL- 113 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~- 113 (710)
...++++|+|++|+||||++..++... ...-..+.++....... ..+.+..+.+........ .....+...+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l--~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~----~~s~~~~~~v~ 175 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF--VDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVIS----HSEGADPAAVA 175 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEEC----CSTTCCHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH--HhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEe----cCCccCHHHHH
Confidence 346799999999999999999998763 22233466666543221 112223333333322110 1111122222
Q ss_pred HHHHHHHhcCCceEEEEecCCC
Q 005181 114 ITTLRDHLKDKSYMVVFDDVWK 135 (710)
Q Consensus 114 ~~~~~~~l~~~~~LlvlDdv~~ 135 (710)
...+...+....=++|+|-.-.
T Consensus 176 ~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 176 FDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHHhcCCCEEEEECCCc
Confidence 3334444444555788897744
No 265
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.89 E-value=0.018 Score=58.46 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=35.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCccccc----CcCcEEEEEeCCCCCHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKT----HFNCRAWITVGKEYKKNDL 85 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~ 85 (710)
...++.|+|++|+||||+|.+++....... .-..++|++....++...+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l 173 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRL 173 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH
Confidence 457999999999999999999876521111 2347899988876665443
No 266
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.81 E-value=0.022 Score=56.98 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=38.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHH
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKE 92 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 92 (710)
....++.|.|.+|+||||+|.+++......+ ..++|++.. .+..++...+...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 3457899999999999999999987632222 578888776 4566666666554
No 267
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.80 E-value=0.0049 Score=55.99 Aligned_cols=24 Identities=13% Similarity=0.255 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+|.|.|++|+||||+|+++++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999775
No 268
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.76 E-value=0.0044 Score=62.39 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=29.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcC-cEEEEEeCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFN-CRAWITVGKE 79 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~-~~~~v~~~~~ 79 (710)
-..-..++|+|++|+|||||+..+++.. .+++-+ .++++-++..
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i-~~~~~~v~~I~~lIGER 215 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSI-AYNHPDCVLMVLLIDER 215 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHH-HHHCTTSEEEEEEESSC
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHH-hhcCCCeeEEEEEecCC
Confidence 3345688999999999999999987752 111122 2456666654
No 269
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.66 E-value=0.017 Score=58.25 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=37.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccc----------cCc----CcEEEEEeCCCCCHHHHHHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLK----------THF----NCRAWITVGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~----------~~f----~~~~~v~~~~~~~~~~~~~~i~~~l 93 (710)
.+++.|+|++|+||||+|.+++...... ... ..++|++....++.+.+. ++++.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHc
Confidence 5799999999999999999987542111 111 468899888776555444 334444
No 270
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.62 E-value=0.025 Score=58.78 Aligned_cols=41 Identities=27% Similarity=0.226 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
...++|+++|++|+||||++..++... ...-..+..+.+..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l--~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFY--KKRGYKVGLVAADV 135 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 346899999999999999999998763 22333556666543
No 271
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.61 E-value=0.027 Score=53.99 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
..++.|.|++|+||||+|.+++... ...-..++|+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 4689999999999999999887652 22234688887654
No 272
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.61 E-value=0.0071 Score=55.63 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...+++|.|++|+||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999999876
No 273
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.57 E-value=0.0068 Score=55.18 Aligned_cols=24 Identities=17% Similarity=0.560 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.++++|.||+|+|||||++.++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998764
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.55 E-value=0.0064 Score=54.80 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..|+|.|++|+||||+|+.+++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999765
No 275
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.55 E-value=0.0062 Score=56.59 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.....+|+|.|++|+||||+++.++..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 556789999999999999999999876
No 276
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.48 E-value=0.008 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFN 60 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~ 60 (710)
..+|+|.|++|+||||+|+++++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35799999999999999999976
No 277
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.47 E-value=0.0034 Score=57.17 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
|-|+|.||+|+|||||++++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 55889999999999999998654
No 278
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.46 E-value=0.0084 Score=60.89 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=63.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCC-CccccchhHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPA-PVEIHDMEEMEL 113 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~ 113 (710)
....++++|.|+.|+||||+++.++.. ......+.++ .+..+.... ....... .......+....
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~-t~ed~~e~~-----------~~~~~~~v~q~~~~~~~~~~ 185 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHIL-TIEDPIEFV-----------HESKKCLVNQREVHRDTLGF 185 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEE-EEESSCCSC-----------CCCSSSEEEEEEBTTTBSCH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEE-EccCcHHhh-----------hhccccceeeeeeccccCCH
Confidence 445669999999999999999998775 2222223332 222221110 0000000 000000011134
Q ss_pred HHHHHHHhcCCceEEEEecCCCcchHHHHHHhcCCCCCCcEEEEEcCchhhh
Q 005181 114 ITTLRDHLKDKSYMVVFDDVWKIDFWGDVEYALLDSKKCGRIIVTTRHMNVA 165 (710)
Q Consensus 114 ~~~~~~~l~~~~~LlvlDdv~~~~~~~~~~~~l~~~~~~~~ilvTtR~~~~~ 165 (710)
...+...|...+=++++|+.-+.+.++.+.... ..|..+++|+-.....
T Consensus 186 ~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 186 SEALRSALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred HHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 557888888888899999998765555444332 2355688888765544
No 279
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.46 E-value=0.025 Score=58.95 Aligned_cols=41 Identities=20% Similarity=0.384 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY 80 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~ 80 (710)
+.++|+|++|+|||||+..++...... ....++++.+....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGert 192 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERT 192 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCc
Confidence 468899999999999999988763221 22345666666543
No 280
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.44 E-value=0.025 Score=58.68 Aligned_cols=39 Identities=28% Similarity=0.243 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVG 77 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (710)
..+++++.|++|+||||++..++... ...-..+..+.+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l--~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEeecc
Confidence 56799999999999999999998763 3333345666554
No 281
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.43 E-value=0.0083 Score=56.09 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+..++++|.||+|+||||+++.++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 34578999999999999999999876
No 282
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.40 E-value=0.0075 Score=54.49 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHh
Q 005181 39 SVVAVVGEGGLGKTTVAGKI 58 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~ 58 (710)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 283
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.38 E-value=0.035 Score=54.86 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=50.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC-HHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK-KNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
.+++++.|++|+||||++..++... ...-..+.++....... ..+.+..+......... ......+..++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~----~~~~~~~p~~~~~~ 171 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY----GEPGEKDVVGIAKR 171 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEE----CCTTCCCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEE----ecCCCCCHHHHHHH
Confidence 6799999999999999999998763 22333566666554333 22333333333222110 01111233444444
Q ss_pred HHHHhc-CCceEEEEecCCC
Q 005181 117 LRDHLK-DKSYMVVFDDVWK 135 (710)
Q Consensus 117 ~~~~l~-~~~~LlvlDdv~~ 135 (710)
..+.++ ..-=++|+|-.-.
T Consensus 172 ~l~~~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 172 GVEKFLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHhCCCCEEEEeCCCC
Confidence 444443 3323788887643
No 284
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.36 E-value=0.035 Score=57.66 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=32.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY 80 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~ 80 (710)
-.+-..++|.|.+|+|||+|+.++++.. .+.+-+.++|+-+....
T Consensus 150 igkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~ 194 (482)
T 2ck3_D 150 YAKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERT 194 (482)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCH
T ss_pred cccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcc
Confidence 3445678899999999999999887752 12233567777777653
No 285
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.36 E-value=0.0087 Score=55.51 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+.|+|.|++|+||||+|+.++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999865
No 286
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.35 E-value=0.032 Score=52.89 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCccc---cc-CcCcEEEEEeCCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGL---KT-HFNCRAWITVGKE 79 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~---~~-~f~~~~~v~~~~~ 79 (710)
...+++|.|++|+|||||++.++..... .. ....++|+.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 3579999999999999999999752111 11 1235788876544
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.26 E-value=0.0091 Score=54.55 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+.|+|.|++|+||||+|+++++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999765
No 288
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.26 E-value=0.027 Score=55.64 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
..++++|+|++|+||||++..++..... .....+.++....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCc
Confidence 4679999999999999999999876321 1223566666544
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.25 E-value=0.0076 Score=54.38 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+|+|.|++|+||||+++.++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999765
No 290
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.23 E-value=0.041 Score=57.42 Aligned_cols=43 Identities=26% Similarity=0.159 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
...++|+++|.+|+||||++..++....... -..+..+++...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~D~~ 140 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADVY 140 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecCCC
Confidence 4468999999999999999999987742221 335666666543
No 291
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.19 E-value=0.0084 Score=54.92 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++++|.||.|+||||+++.++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999865
No 292
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.15 E-value=0.037 Score=57.75 Aligned_cols=27 Identities=33% Similarity=0.382 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.....+|+|+|++|+||||+|+++++.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 445689999999999999999999775
No 293
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.14 E-value=0.011 Score=54.89 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+++|.|+.|+||||+++.++..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999998764
No 294
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.14 E-value=0.012 Score=54.05 Aligned_cols=25 Identities=16% Similarity=0.604 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+.++|.||+|+|||||++.++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4678999999999999999998754
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.10 E-value=0.012 Score=54.19 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....|+|.|++|+||||+|+.+++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999765
No 296
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.10 E-value=0.012 Score=55.03 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+...+|+|.|++|+|||||++.++..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999998776
No 297
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.08 E-value=0.032 Score=57.56 Aligned_cols=56 Identities=16% Similarity=0.190 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccc----cCcCcEEEEEeCCCCCHHHHHHHHHHHHh
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLK----THFNCRAWITVGKEYKKNDLLRTILKEFH 94 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 94 (710)
-.++.|.|++|+|||||+.+++-..... +.-..++|++......... +..+++.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcC
Confidence 4799999999999999999765221011 1234688988766554433 333444443
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.06 E-value=0.012 Score=54.57 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...+++|.|+.|+||||+++.++..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999765
No 299
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.05 E-value=0.011 Score=55.17 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..++|+|.|++|+||||+++.++..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999765
No 300
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.04 E-value=0.015 Score=49.56 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=22.0
Q ss_pred CccEEEEEeeccCCccccccccccccceEEeeccc
Q 005181 552 NLIRLGLELSGLAEEPIRVLQASPNLLELRLTGTY 586 (710)
Q Consensus 552 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 586 (710)
+|+.|+|++|.++...+..|..+++|+.|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 46666666666666666666666666666666554
No 301
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.02 E-value=0.012 Score=53.00 Aligned_cols=23 Identities=48% Similarity=0.706 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhh
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIF 59 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~ 59 (710)
...+++|.|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45789999999999999999754
No 302
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.02 E-value=0.011 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+|+|.|++|+||||+|+.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998765
No 303
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.99 E-value=0.0066 Score=64.63 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=33.6
Q ss_pred Cceeecccchhhc---cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 22 AGFSGKEDNNQLI---QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 22 ~~~vGre~~~~~i---~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..++|++..++.+ ....+-|.|+|++|+|||++|+.+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHH
Confidence 5789999988877 233457889999999999999999886
No 304
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.99 E-value=0.049 Score=54.54 Aligned_cols=57 Identities=25% Similarity=0.137 Sum_probs=36.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC-CCHHHHHHHHHHHHh
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE-YKKNDLLRTILKEFH 94 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~ 94 (710)
+...+++|.|+.|+||||+++.++... +..-..+.+....-. ....+.+....+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l--~~~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL--KNHGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 456899999999999999999998763 222234555544322 233344444455444
No 305
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.98 E-value=0.015 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+++|.|+.|+||||+++.++..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999998764
No 306
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.97 E-value=0.011 Score=54.84 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....+|+|.|++|+||||+++.++..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998765
No 307
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.97 E-value=0.042 Score=54.30 Aligned_cols=40 Identities=28% Similarity=0.238 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
..++++|+|++|+||||++..++... ...-..+.++....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~--~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH--HHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEecCCc
Confidence 56799999999999999999998763 22223456665543
No 308
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.96 E-value=0.047 Score=56.98 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=37.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC-HHHHHHHHH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK-KNDLLRTIL 90 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~ 90 (710)
-.+-..++|.|.+|+|||+|+.++++.. .+.+-+.++|+-+..... ..++.+++.
T Consensus 162 igkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~ 217 (498)
T 1fx0_B 162 YRRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMK 217 (498)
T ss_dssp CCTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHH
T ss_pred cccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhh
Confidence 4445678899999999999998887752 123346788887776643 233444443
No 309
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.92 E-value=0.013 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..|+|.|++|+||||+|+.+++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999875
No 310
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.91 E-value=0.015 Score=54.24 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+++|.|++|+||||+++.++..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999776
No 311
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.91 E-value=0.0022 Score=73.12 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+.+.|+|++|+||||+|+.++..
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999886
No 312
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.91 E-value=0.012 Score=53.50 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+.|+|+|++|+||||+|+.+++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457899999999999999999765
No 313
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.90 E-value=0.013 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..|+|.|++|+||||+|+.+++.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999876
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.86 E-value=0.016 Score=52.83 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|+.|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998664
No 315
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.84 E-value=0.012 Score=54.58 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+.++|.||+|+|||||++.+...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999998753
No 316
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.84 E-value=0.015 Score=53.34 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFN 60 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~ 60 (710)
.+++|.|+.|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999964
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.80 E-value=0.015 Score=56.23 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++|+|.|++|+||||+|++++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999765
No 318
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.77 E-value=0.017 Score=55.46 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=22.6
Q ss_pred ecccchhhc---cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 26 GKEDNNQLI---QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 26 Gre~~~~~i---~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
|....++.+ -+...+|+|.|+.|+||||+++.++..
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 333344444 344578999999999999999998764
No 319
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.77 E-value=0.016 Score=52.56 Aligned_cols=22 Identities=41% Similarity=0.672 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.++|.|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998765
No 320
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.76 E-value=0.018 Score=52.68 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
....|+|.|++|+||||+++.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998763
No 321
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.74 E-value=0.019 Score=53.37 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.....|+|.|+.|+||||+|+.+++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998764
No 322
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.73 E-value=0.016 Score=54.17 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...+|+|.|+.|+|||||++.++..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998775
No 323
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.72 E-value=0.017 Score=54.32 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+...+++|.||+|+|||||++.++..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 44579999999999999999998765
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.71 E-value=0.017 Score=53.14 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|++|+||||+|+.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998764
No 325
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.70 E-value=0.019 Score=53.52 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+|+|.|++|+||||+|+.++..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999775
No 326
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.67 E-value=0.014 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|+|.|++|+||||+|+.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999765
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.66 E-value=0.017 Score=53.17 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....|+|.|++|+||||+|+.+++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999765
No 328
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.66 E-value=0.019 Score=57.23 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
++.|+|+|+|-|||||||.+..++--. ...-..|.-++++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL--A~~GkkVllID~Dpq 87 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDPK 87 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESSS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH--HHCCCeEEEEecCCC
Confidence 467999999999999999998876652 233345777887743
No 329
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.65 E-value=0.017 Score=55.51 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFN 60 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~ 60 (710)
...+|+|.|+.|+||||+++.+++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999984
No 330
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.61 E-value=0.021 Score=53.35 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=24.3
Q ss_pred eeecccchhhc-cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 24 FSGKEDNNQLI-QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 24 ~vGre~~~~~i-~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+.|...+..- ....++|.|.|++|+||||.|+.+++.
T Consensus 14 ~~p~~~~~~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 14 LVPRGSHMTDQKLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp ----------CCTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCCCccccchhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444333 556789999999999999999998765
No 331
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.60 E-value=0.027 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|+|.|+.|+||||+++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 332
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.60 E-value=0.022 Score=50.29 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....+++|.|+.|+|||||++.++..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 55679999999999999999999765
No 333
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.58 E-value=0.016 Score=54.58 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+...+++|.|+.|+|||||++.++..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34568999999999999999998764
No 334
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.57 E-value=0.019 Score=53.41 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFN 60 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~ 60 (710)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 335
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.55 E-value=0.019 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+|+|.|+.|+||||+|+.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999765
No 336
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.55 E-value=0.02 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+++|.|+.|+|||||++.++..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998764
No 337
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.54 E-value=0.021 Score=52.86 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....|+|.|++|+||||+|+.+++.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999765
No 338
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.54 E-value=0.46 Score=60.54 Aligned_cols=140 Identities=9% Similarity=0.076 Sum_probs=74.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
..+-|.++||+|+|||++|+++.... ..+ .++.++++...+...++..+...+......... ... .
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-~~~--P------- 1331 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-TLL--P------- 1331 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-EEE--E-------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-ccc--C-------
Confidence 34677899999999999997775542 122 356678877767655554444333211100000 000 0
Q ss_pred HHHHhcCCceEEEEecCCCcc--------hHHHHHHhcCC-----CCCC-------cEEEEEcCchh------hhhhccC
Q 005181 117 LRDHLKDKSYMVVFDDVWKID--------FWGDVEYALLD-----SKKC-------GRIIVTTRHMN------VAKYCKS 170 (710)
Q Consensus 117 ~~~~l~~~~~LlvlDdv~~~~--------~~~~~~~~l~~-----~~~~-------~~ilvTtR~~~------~~~~~~~ 170 (710)
.-.++++++++||++-.+ ..+-+.+.+.. ...+ ..+|-++-... +.....
T Consensus 1332 ---~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll- 1407 (2695)
T 4akg_A 1332 ---KSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT- 1407 (2695)
T ss_dssp ---BSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH-
T ss_pred ---CCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh-
Confidence 003578899999964321 23333333321 1111 12333332221 111111
Q ss_pred CCCcceEEccCCCchhHHHHHHHHH
Q 005181 171 SSSVHVHELETLPPNEAWKLFCRKA 195 (710)
Q Consensus 171 ~~~~~~~~l~~l~~~ea~~l~~~~~ 195 (710)
....++.++..+.++-..+|....
T Consensus 1408 -Rrf~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1408 -RHAAILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp -TTEEEEECCCCTTTHHHHHHHHHH
T ss_pred -heeeEEEeCCCCHHHHHHHHHHHH
Confidence 122678899999998888888775
No 339
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.51 E-value=0.025 Score=58.35 Aligned_cols=49 Identities=12% Similarity=0.238 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcC----cEEEEEeCCCCC-HHHHHHHH
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFN----CRAWITVGKEYK-KNDLLRTI 89 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~----~~~~v~~~~~~~-~~~~~~~i 89 (710)
..++|.|.+|+|||+|+.++++.. ..+.+ .++|+-+..... ..++.+++
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~--~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~ 205 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA--TVLDSSDDFAVVFAAIGITFEEAEFFMEDF 205 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC--BCSSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH--HhccCCCceEEEEEEecCCcHHHHHHHHHH
Confidence 456899999999999999998873 22222 566666665432 33444443
No 340
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.49 E-value=0.021 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|++|+||||+|+.+++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999876
No 341
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.48 E-value=0.02 Score=56.33 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.....|.|.|++|+||||+|++++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999764
No 342
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.48 E-value=0.045 Score=54.85 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=38.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (710)
....+.|.|.+|+||||+|.+++..... .-..++|++.. .+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 3468999999999999999999887422 33467787764 45666666665543
No 343
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.48 E-value=0.023 Score=55.96 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
....+|+|.|++|+||||+|+.++...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999987763
No 344
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.47 E-value=0.018 Score=53.39 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=22.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.....+|+|.|+.|+||||+|+.+++.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999999764
No 345
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.46 E-value=0.021 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|++|+||||+|+.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999764
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.44 E-value=0.017 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+.|+|.|++|+||||+|+.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999765
No 347
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.41 E-value=0.014 Score=53.27 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+.+.|+||+|+||||+|.++++.
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998776
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.41 E-value=0.02 Score=52.92 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|++|+||||+|+.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999775
No 349
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.40 E-value=0.02 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|+|.|+.|+||||+++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999775
No 350
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.40 E-value=0.036 Score=67.91 Aligned_cols=89 Identities=12% Similarity=0.099 Sum_probs=55.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
..+.+.|+||+|+|||+||.+++... ...-..++|+++........ ++.++..... -......+.++..+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~--l~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDN--LLCSQPDTGEQALEI 1496 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTT--CEEECCSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchh--ceeecCChHHHHHHH
Confidence 46899999999999999999998763 33445688888887766544 3444321110 001111122345555
Q ss_pred HHHHhc-CCceEEEEecCC
Q 005181 117 LRDHLK-DKSYMVVFDDVW 134 (710)
Q Consensus 117 ~~~~l~-~~~~LlvlDdv~ 134 (710)
++...+ .+.-+||+|.++
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCCCEEEEcChh
Confidence 555543 456799999995
No 351
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.36 E-value=0.016 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+|+|.|++|+||||+|+.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999765
No 352
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.34 E-value=0.025 Score=50.33 Aligned_cols=25 Identities=36% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..++++|.|+.|+||||++.+++..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999876
No 353
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.33 E-value=0.017 Score=52.56 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=17.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|++|+||||+|+.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998765
No 354
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.32 E-value=0.037 Score=51.01 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEe
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITV 76 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~ 76 (710)
.|+|-|+.|+||||.++.+++.. ......+++..-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L--~~~g~~v~~tre 36 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL--EKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEEC
Confidence 47899999999999999998873 333334555443
No 355
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.31 E-value=0.02 Score=53.15 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFN 60 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~ 60 (710)
..|+|.|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999866
No 356
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.30 E-value=0.024 Score=54.69 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....+|+|.|++|+||||+|+.+++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999774
No 357
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.30 E-value=0.025 Score=51.83 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|++|+||||+|+.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 358
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.29 E-value=0.024 Score=54.97 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|++|+||||+|+.++..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999775
No 359
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.29 E-value=0.022 Score=53.96 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+|+|.|++|+||||+|+.++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998664
No 360
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.29 E-value=0.025 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....+|+|.|+.|+|||||++.++..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34579999999999999999998775
No 361
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.27 E-value=0.026 Score=51.25 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+.|.|.|++|+||||||.+++.+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999999887
No 362
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.24 E-value=0.023 Score=52.78 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|+.|+||||+++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 363
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.23 E-value=0.08 Score=55.14 Aligned_cols=95 Identities=18% Similarity=0.307 Sum_probs=50.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHH-HHhhCCcccccCcC-cEEEEEeCCCCCH-HHHHHHHHHHHhhhcCCCCCccccchhH-
Q 005181 35 QSERSVVAVVGEGGLGKTTVA-GKIFNSEGLKTHFN-CRAWITVGKEYKK-NDLLRTILKEFHRVANQPAPVEIHDMEE- 110 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla-~~~~~~~~~~~~f~-~~~~v~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~- 110 (710)
-.+-..++|.|..|+|||++| ..+++. . +-+ .++|+-+.....- .++.+++... +....-.......+...
T Consensus 159 igrGQR~~Ifg~~g~GKT~l~l~~I~n~--~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~-g~m~~tvvV~atad~p~~ 233 (513)
T 3oaa_A 159 IGRGQRELIIGDRQTGKTALAIDAIINQ--R--DSGIKCIYVAIGQKASTISNVVRKLEEH-GALANTIVVVATASESAA 233 (513)
T ss_dssp CBTTCBCEEEESSSSSHHHHHHHHHHTT--S--SSSCEEEEEEESCCHHHHHHHHHHHHHH-SCSTTEEEEEECTTSCHH
T ss_pred cccCCEEEeecCCCCCcchHHHHHHHhh--c--cCCceEEEEEecCChHHHHHHHHHHhhc-CcccceEEEEECCCCChH
Confidence 333456789999999999996 566665 2 233 3577877765432 2333333221 10000000001011111
Q ss_pred ---------HHHHHHHHHHhcCCceEEEEecCCCc
Q 005181 111 ---------MELITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 111 ---------~~~~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
...++++++ +++.+|+++||+...
T Consensus 234 ~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 234 LQYLAPYAGCAMGEYFRD--RGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--cCCCEEEEecChHHH
Confidence 134455554 579999999998553
No 364
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.22 E-value=0.029 Score=55.78 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..++|+|.||.|+||||||.++++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999887
No 365
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.22 E-value=0.0093 Score=60.90 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=31.0
Q ss_pred Cceeecccchhhc-----cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 22 AGFSGKEDNNQLI-----QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 22 ~~~vGre~~~~~i-----~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++++|.+...+.+ .+..+-+.|+|++|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHh
Confidence 4689988755444 333445899999999999999999875
No 366
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.21 E-value=0.024 Score=50.67 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|+|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999775
No 367
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.21 E-value=0.14 Score=48.60 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=18.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhh
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIF 59 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~ 59 (710)
.+.+++.|+.|+||||++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4789999999999998766554
No 368
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.20 E-value=0.12 Score=54.12 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=36.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILK 91 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 91 (710)
....+.|.|.+|+||||+|.+++...... -..++|++... +..++...+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 35689999999999999999998874222 34678876654 44455555544
No 369
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.18 E-value=0.026 Score=52.91 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|+.|+||||+|+.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 370
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.16 E-value=0.025 Score=52.87 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|+.|+||||+|+.+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 371
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.09 E-value=0.026 Score=51.74 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+.+|+|+|+.|+||||+|+.+++.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998664
No 372
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.07 E-value=0.026 Score=51.81 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|+|.|+.|+||||+|+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999775
No 373
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.07 E-value=0.028 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....|+|.|++|+||||+|+.+++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999765
No 374
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.06 E-value=0.03 Score=55.50 Aligned_cols=25 Identities=44% Similarity=0.529 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...+++|.|++|+||||+++.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999999876
No 375
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.04 E-value=0.03 Score=54.04 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....+|+|.|+.|+||||+++.+++.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999754
No 376
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.02 E-value=0.13 Score=54.55 Aligned_cols=41 Identities=24% Similarity=0.207 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGK 78 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~ 78 (710)
...++|+|+|.+|+||||++.+++.... ..-..+..++...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~--~~G~kVllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ--RKGWKTCLICADT 139 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEeccc
Confidence 3467999999999999999999987632 2223455666543
No 377
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.01 E-value=0.053 Score=50.48 Aligned_cols=39 Identities=15% Similarity=-0.081 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
-.|.+.|.||+||||+|..++.... .....++++.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL--RQGVRVMAGVVETH 45 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HCCCCEEEEEeCCC
Confidence 3578999999999999999888742 22234555555543
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.98 E-value=0.028 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|+|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 379
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.98 E-value=0.027 Score=55.29 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.++|+|.||.|+||||||.+++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 468899999999999999999876
No 380
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.95 E-value=0.033 Score=53.41 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.....|+|.|++|+||||+|+.+++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999764
No 381
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.95 E-value=0.033 Score=55.38 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...+|+|.|++|+||||+|+.+...
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3459999999999999999998665
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.94 E-value=0.027 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|++|+||||+|+.+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999765
No 383
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.91 E-value=0.1 Score=52.45 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=29.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcC-cEEEEEeCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFN-CRAWITVGKE 79 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~-~~~~v~~~~~ 79 (710)
-..-..++|.|++|+|||+|+.++++... .++-+ .++++-+...
T Consensus 172 igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~-~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 172 IGKGQRGMIVAPPKAGKTTILKEIANGIA-ENHPDTIRIILLIDER 216 (427)
T ss_dssp CBTTCEEEEEECTTCCHHHHHHHHHHHHH-HHCTTSEEEEEECSCC
T ss_pred ccCCceEEEecCCCCChhHHHHHHHHHHh-hcCCCeEEEEEEeccC
Confidence 34456778999999999999998887621 11222 2355655544
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.91 E-value=0.034 Score=50.33 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|+.|+||||+++.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999999775
No 385
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.90 E-value=0.029 Score=52.59 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|+|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998654
No 386
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.89 E-value=0.032 Score=54.79 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhh
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIF 59 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~ 59 (710)
....+|+|.|+.|+||||+|+.++
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999997
No 387
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.86 E-value=0.092 Score=54.89 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCCHHHHH-HHhhCCcccccCcC-cEEEEEeCCCC
Q 005181 36 SERSVVAVVGEGGLGKTTVA-GKIFNSEGLKTHFN-CRAWITVGKEY 80 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla-~~~~~~~~~~~~f~-~~~~v~~~~~~ 80 (710)
.+-..++|.|.+|+|||+|| ..+++. . .-+ .++|+-+....
T Consensus 173 grGQR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~ 215 (515)
T 2r9v_A 173 GRGQRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKK 215 (515)
T ss_dssp ETTCBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCH
T ss_pred ccCCEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCc
Confidence 33456789999999999995 477776 2 234 34677777654
No 388
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.80 E-value=0.02 Score=54.44 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=16.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhh-CC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIF-NS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~-~~ 61 (710)
..+++|.|+.|+||||+++.++ ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998 54
No 389
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.77 E-value=0.28 Score=51.65 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (710)
...++.|.|++|+||||+|.+++..... ..-..++|++.. .+..++...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 3468999999999999999999877321 122467887765 34556666655443
No 390
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.74 E-value=0.029 Score=52.95 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|++|+||||+|+.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999765
No 391
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.74 E-value=0.037 Score=55.26 Aligned_cols=40 Identities=23% Similarity=0.144 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVG 77 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (710)
...++++|+|++|+||||++..++... ...-..+.++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l--~~~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY--AELGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH--HHTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCC
Confidence 456899999999999999999998763 2233356666554
No 392
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.72 E-value=0.04 Score=51.50 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.....+|+|.|+.|+||||+|+.++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 445678999999999999999999776
No 393
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.71 E-value=0.022 Score=56.11 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=19.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+..+|+|.|++|+||||+|+.+++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
No 394
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.70 E-value=0.039 Score=52.49 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 455679999999999999999999875
No 395
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.69 E-value=0.032 Score=53.71 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVG 77 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (710)
...+++|.|+.|+|||||++.++..... ..-..++|+...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEcc
Confidence 3578999999999999999998743110 122456666543
No 396
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.64 E-value=0.036 Score=55.38 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+|+|.|++|+||||+|.+++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999775
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.63 E-value=0.041 Score=51.65 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFN 60 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~ 60 (710)
..+|+|.|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 398
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.61 E-value=0.039 Score=52.61 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+. .+++|.|+.|+|||||++.++.-
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 445 89999999999999999999875
No 399
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.60 E-value=0.16 Score=53.32 Aligned_cols=26 Identities=38% Similarity=0.578 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....+++|.|+.|+||||+++.++..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 34679999999999999999999876
No 400
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.59 E-value=0.095 Score=54.88 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=30.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHH-HHhhCCccc----ccCcC-cEEEEEeCCCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVA-GKIFNSEGL----KTHFN-CRAWITVGKEYK 81 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla-~~~~~~~~~----~~~f~-~~~~v~~~~~~~ 81 (710)
-.+-..++|.|.+|+|||+|| ..+++.... .++-+ .++|+-+.....
T Consensus 159 igrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~ 211 (510)
T 2ck3_A 159 IGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRS 211 (510)
T ss_dssp CBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHH
T ss_pred cccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcH
Confidence 334456789999999999995 466665321 01234 367777776543
No 401
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.54 E-value=0.045 Score=53.63 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..++|+|.||.|+||||||.++++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3568999999999999999999765
No 402
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.49 E-value=0.11 Score=54.34 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=28.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHH-HHhhCCcccccCcC-cEEEEEeCCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVA-GKIFNSEGLKTHFN-CRAWITVGKEY 80 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla-~~~~~~~~~~~~f~-~~~~v~~~~~~ 80 (710)
-.+-..++|.|.+|+|||+|| ..+++. . +-+ .++|+-+....
T Consensus 159 igrGQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~ 202 (502)
T 2qe7_A 159 IGRGQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQ 202 (502)
T ss_dssp CBTTCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCH
T ss_pred cccCCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcc
Confidence 334456789999999999995 466665 2 234 34677777653
No 403
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.47 E-value=0.031 Score=53.98 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.....|+|.|++|+||||+|+.++..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 33578999999999999999999765
No 404
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.45 E-value=0.054 Score=51.27 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
....|+|.|++|+||||+++.+++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998873
No 405
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.43 E-value=0.083 Score=49.24 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
...|+|.|+.|+||||+++.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998763
No 406
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.40 E-value=0.046 Score=54.18 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+.|+|.|+.|+||||+|++++..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.39 E-value=0.081 Score=52.35 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=30.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVG 77 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (710)
-....+++|.|++|+|||||++.++...... .-..++|+...
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e 73 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLE 73 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCc
Confidence 3445789999999999999999998763211 12257777654
No 408
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.39 E-value=0.046 Score=54.13 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...+++|.|+.|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999876
No 409
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.38 E-value=0.035 Score=50.72 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.+++|.|+.|+||||+++.++..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999998875
No 410
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.37 E-value=0.047 Score=51.95 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455679999999999999999999876
No 411
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.35 E-value=0.019 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++|+|.|+.|+||||+|+.++..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999776
No 412
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.33 E-value=0.092 Score=48.45 Aligned_cols=125 Identities=12% Similarity=0.091 Sum_probs=57.6
Q ss_pred ceeecccchhhccCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCC
Q 005181 23 GFSGKEDNNQLIQSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAP 102 (710)
Q Consensus 23 ~~vGre~~~~~i~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 102 (710)
.+|.|...+........+..++|+-|.||||.|.+.+.+. ......++.+.... +.+.....+...++......
T Consensus 13 ~~~~~~~~~~~~~~~G~l~vitG~MgsGKTT~lL~~a~r~--~~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~-- 86 (214)
T 2j9r_A 13 GLVPRGSHMYLINQNGWIEVICGSMFSGKSEELIRRVRRT--QFAKQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAV-- 86 (214)
T ss_dssp ------CCCCCCCCSCEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEECC-------------------CCEE--
T ss_pred CcccCCccccccCCCCEEEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEecc--CCcchHHHHHhhcCCeeEEe--
Confidence 3555555544334445788899999999999999998874 33333444444221 12222234444443321100
Q ss_pred ccccchhHHHHHHHHHHHhcCCceEEEEecCCCc--chHHHHHHhcCCCCCCcEEEEEcCchh
Q 005181 103 VEIHDMEEMELITTLRDHLKDKSYMVVFDDVWKI--DFWGDVEYALLDSKKCGRIIVTTRHMN 163 (710)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~LlvlDdv~~~--~~~~~~~~~l~~~~~~~~ilvTtR~~~ 163 (710)
..... ..+.+...++-=++++|.+.-. +.++.+. .+.+ .|-.||+|-++.+
T Consensus 87 -~~~~~------~~~~~~~~~~~dvViIDEaQF~~~~~V~~l~-~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 87 -PVSAS------KDIFKHITEEMDVIAIDEVQFFDGDIVEVVQ-VLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp -ECSSG------GGGGGGCCSSCCEEEECCGGGSCTTHHHHHH-HHHH--TTCEEEEEECSBC
T ss_pred -ecCCH------HHHHHHHhcCCCEEEEECcccCCHHHHHHHH-HHhh--CCCEEEEEecccc
Confidence 00100 1122223333349999999765 3443333 3222 2558999999754
No 413
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.30 E-value=0.045 Score=54.55 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....+|+|.|+.|+||||+++.++..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55679999999999999999998764
No 414
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.28 E-value=0.039 Score=52.06 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345578999999999999999999875
No 415
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.26 E-value=0.17 Score=54.27 Aligned_cols=54 Identities=9% Similarity=0.016 Sum_probs=37.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEF 93 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l 93 (710)
...++.|.|++|+||||+|.+++...... +-..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 34688999999999999999998763221 134678887754 4556666555443
No 416
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.25 E-value=0.051 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.++++|.|++|+||||++.+++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999875
No 417
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.24 E-value=0.047 Score=51.52 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+|+|.|++|+||||+|+.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999765
No 418
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.22 E-value=0.04 Score=52.79 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|+.|+||||+++.++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999775
No 419
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.21 E-value=0.051 Score=52.63 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456679999999999999999999875
No 420
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.19 E-value=0.066 Score=51.27 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-....+++|.|+.|+|||||++.++.-
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 344568999999999999999999886
No 421
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.16 E-value=0.041 Score=51.16 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=24.0
Q ss_pred chhhccCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 30 NNQLIQSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 30 ~~~~i~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.++.+ ....+++|.|+.|+|||||++.++..
T Consensus 15 ~l~~i-~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 15 YVDAI-DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHH-HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHhc-cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34444 23467899999999999999998754
No 422
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.14 E-value=0.061 Score=47.83 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..|+|.|++|+|||||..+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 423
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.13 E-value=0.058 Score=52.18 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=25.2
Q ss_pred hhhc-cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 31 NQLI-QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 31 ~~~i-~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++.+ .....+++|.|+.|+||||+++.++..
T Consensus 17 l~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 17 VLELCHRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp HHHGGGCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHhhCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 3444 455679999999999999999998775
No 424
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.10 E-value=0.048 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++|+|.|+.|+||||+|+.++..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 38999999999999999999765
No 425
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.08 E-value=0.055 Score=52.32 Aligned_cols=27 Identities=33% Similarity=0.355 Sum_probs=23.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 455679999999999999999999875
No 426
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.08 E-value=0.045 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|+|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999765
No 427
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.07 E-value=0.19 Score=53.14 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTIL 90 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 90 (710)
...++.|.|++|+||||+|.+++...... .-..++|++... +..++...+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 45689999999999999999998873221 223678877654 4455555544
No 428
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.07 E-value=0.048 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|+|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999765
No 429
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.00 E-value=0.099 Score=49.95 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455679999999999999999999865
No 430
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.99 E-value=0.072 Score=53.07 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=32.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK 81 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (710)
....++|+|+|-||+||||+|..++... ...-..|+.+++....+
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~~~~ 82 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDPKHD 82 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESSSCC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCCCCC
Confidence 4456889999999999999999988773 22334677788765443
No 431
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.98 E-value=0.054 Score=53.12 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...+++|.|++|+|||||+.+++..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998864
No 432
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.98 E-value=0.079 Score=51.33 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=27.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEE
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWI 74 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v 74 (710)
-....+++|.|+.|+|||||++.++.-. + ...+.+++
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~-p~~G~I~~ 70 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL--S-PSHGECHL 70 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS--C-CSSCEEEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC--C-CCCcEEEE
Confidence 4456789999999999999999998752 1 22455554
No 433
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.94 E-value=0.054 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+|.|.|++|+||+|.|+.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998765
No 434
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.91 E-value=0.051 Score=54.40 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
+....|+|.|+.|+||||+++.++..
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999998776
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.89 E-value=0.06 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|+.|+||||+|+.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999776
No 436
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.89 E-value=0.11 Score=54.23 Aligned_cols=92 Identities=17% Similarity=0.381 Sum_probs=52.2
Q ss_pred CCCeEEEEEcCCCCCHHHHH-HHhhCCcccccCcC-cEEEEEeCCCCCHHHHHHHHHHHHhhhcC----------CCCCc
Q 005181 36 SERSVVAVVGEGGLGKTTVA-GKIFNSEGLKTHFN-CRAWITVGKEYKKNDLLRTILKEFHRVAN----------QPAPV 103 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla-~~~~~~~~~~~~f~-~~~~v~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~ 103 (710)
.+-..++|.|.+|+|||+|| ..+++.. . -+ .++|+-+.....- ..++.+.+..... ...++
T Consensus 161 grGQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~E---v~~~~~~~~~~g~m~rtvvV~atad~p~ 233 (507)
T 1fx0_A 161 GRGQRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASS---VAQVVTNFQERGAMEYTIVVAETADSPA 233 (507)
T ss_dssp BTTCBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHH---HHHHHHHTGGGTGGGSEEEEEECTTSCG
T ss_pred ccCCEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchH---HHHHHHHHHhcCccccceEEEECCCCCH
Confidence 33456789999999999995 5777762 2 34 3477777765332 2333333332210 11111
Q ss_pred cccch---hHHHHHHHHHHHhcCCceEEEEecCCCc
Q 005181 104 EIHDM---EEMELITTLRDHLKDKSYMVVFDDVWKI 136 (710)
Q Consensus 104 ~~~~~---~~~~~~~~~~~~l~~~~~LlvlDdv~~~ 136 (710)
...-. .-...+++++. +++.+|+++||+...
T Consensus 234 ~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 234 TLQYLAPYTGAALAEYFMY--RERHTLIIYDDLSKQ 267 (507)
T ss_dssp GGTTHHHHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCcEEEEEecHHHH
Confidence 11111 11245555655 589999999998554
No 437
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.88 E-value=0.085 Score=55.59 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=33.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCH
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKK 82 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~ 82 (710)
-.+-..++|.|.+|+|||+|+.++++. .+-+.++|+-+.....-
T Consensus 224 igkGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~E 267 (588)
T 3mfy_A 224 QAKGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNE 267 (588)
T ss_dssp EETTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSH
T ss_pred cccCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHH
Confidence 334567889999999999999998764 22356788888776654
No 438
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.88 E-value=0.051 Score=52.93 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 445678999999999999999999865
No 439
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.86 E-value=0.094 Score=49.64 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEE
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWI 74 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v 74 (710)
...|+|.|+.|+||||+++.+++... ...+..++..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeee
Confidence 46899999999999999999988742 2334434444
No 440
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.86 E-value=0.054 Score=49.18 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.|+|.|.+|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 441
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.85 E-value=0.062 Score=51.73 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 455679999999999999999999875
No 442
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.84 E-value=0.028 Score=50.41 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++++|+|++|+|||||++.++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998776
No 443
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.83 E-value=0.063 Score=51.90 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 445679999999999999999999876
No 444
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.82 E-value=0.054 Score=51.68 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345578999999999999999999875
No 445
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.81 E-value=0.055 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
+.|+|-|+.|+||||+++.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999998873
No 446
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.81 E-value=0.052 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..|+|.|++|+||||+|+.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999775
No 447
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.81 E-value=0.06 Score=53.07 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|+|+.|+|||||++.++.-
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 455679999999999999999998765
No 448
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.80 E-value=0.037 Score=60.92 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=32.5
Q ss_pred Cceeecccchhhc---cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 22 AGFSGKEDNNQLI---QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 22 ~~~vGre~~~~~i---~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
++++|.+..++.+ -.....+.|+|++|+||||+|+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4578888887777 222368899999999999999999886
No 449
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.79 E-value=0.093 Score=53.19 Aligned_cols=45 Identities=24% Similarity=0.385 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCCcccc---cCc-CcEEEEEeCCCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNSEGLK---THF-NCRAWITVGKEY 80 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~~~~~---~~f-~~~~~v~~~~~~ 80 (710)
+..+++.|+|++|+|||||+.+++...... +.. ..++|++.....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~ 177 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 177 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC
Confidence 345899999999999999999997652111 111 245888776543
No 450
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.78 E-value=0.06 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFN 60 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~ 60 (710)
..+|.|.|++|+||||+|+++++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999976
No 451
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.78 E-value=0.055 Score=51.20 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445678999999999999999999876
No 452
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.78 E-value=0.046 Score=50.99 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=23.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 334568999999999999999999875
No 453
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.71 E-value=0.055 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
....+|+|.|+.|+||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998664
No 454
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.71 E-value=0.056 Score=52.17 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345578999999999999999999875
No 455
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.70 E-value=0.066 Score=52.06 Aligned_cols=27 Identities=41% Similarity=0.458 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455679999999999999999999875
No 456
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.70 E-value=0.057 Score=51.73 Aligned_cols=27 Identities=30% Similarity=0.451 Sum_probs=23.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 445678999999999999999999876
No 457
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.70 E-value=0.077 Score=51.64 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY 80 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~ 80 (710)
++|+|.|-||+||||+|..++... ...-..++.+++....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL--HAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH--HHCCCcEEEEcCCCCC
Confidence 577889999999999999998773 2333467778776544
No 458
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.68 E-value=0.066 Score=54.16 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999998763
No 459
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.68 E-value=0.066 Score=51.96 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=23.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-....+++|.|+.|+|||||++.++.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455678999999999999999999885
No 460
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.67 E-value=0.096 Score=52.59 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=33.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY 80 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~ 80 (710)
....+++.+.|-||+||||+|..++... ......++.++.+...
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~l--a~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQL--AKVRRSVLLLSTDPAH 56 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH--TTSSSCEEEEECCSSC
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHH--HhCCCcEEEEECCCCC
Confidence 4457889999999999999999988763 3334467778777543
No 461
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.63 E-value=0.11 Score=48.44 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
...|+|.|+.|+||||+++.+++..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998874
No 462
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.62 E-value=0.14 Score=47.43 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=29.6
Q ss_pred eEEEEE-cCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCC
Q 005181 39 SVVAVV-GEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYK 81 (710)
Q Consensus 39 ~~i~i~-G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~ 81 (710)
++|+|+ +-||+||||+|..++... ......++.+++....+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l--a~~g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL--SRSGYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEECCCCCC
Confidence 567787 479999999999998874 23334677788765433
No 463
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.59 E-value=0.07 Score=51.77 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-....+++|.|+.|+|||||++.++.-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 455679999999999999999999865
No 464
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.56 E-value=0.068 Score=54.56 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=23.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+..+.++|+|++|+||||+++.++..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 445579999999999999999999854
No 465
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.55 E-value=0.063 Score=51.56 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345578999999999999999999884
No 466
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.48 E-value=0.097 Score=52.84 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=32.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
....+++.+.|-||+||||+|..++........-..++-++....
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 445689999999999999999998876321033456777777644
No 467
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.46 E-value=0.062 Score=49.17 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-.|+|.|+.|+|||||++.++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999999765
No 468
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.44 E-value=0.06 Score=55.13 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..+.+.|+|++|+|||++|+++++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999876
No 469
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.39 E-value=0.13 Score=62.20 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHH
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITTLR 118 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (710)
+++.|+|++|+||||||.+++.. ....-..++|++.....+... ++.++... .........+.+++.+.++
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~--~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDI--DNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCG--GGCEEECCSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCH--HHeEEcCCCCHHHHHHHHH
Q ss_pred HHh-cCCceEEEEecCC
Q 005181 119 DHL-KDKSYMVVFDDVW 134 (710)
Q Consensus 119 ~~l-~~~~~LlvlDdv~ 134 (710)
... ..+.-++|+|.+.
T Consensus 455 ~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHhcCCCEEEECCHH
No 470
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.35 E-value=0.085 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.229 Sum_probs=19.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
...|+|.|+.|+||||+++.+++..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998873
No 471
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.30 E-value=0.067 Score=51.43 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344578999999999999999999875
No 472
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.26 E-value=0.16 Score=62.50 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCCCHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEYKKNDLLRTILKEFHRVANQPAPVEIHDMEEMELITT 116 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (710)
..+++.|+|++|+||||||.+++... ...-..++|++.....+... ++.++.....- ...+..+.+++.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L--~I~~~~~~e~il~~ 452 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNL--LCSQPDTGEQALEI 452 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTC--EEECCSSHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHe--EEeCCCCHHHHHHH
Confidence 35799999999999999999998773 33334789998877766431 34443321110 01112244566666
Q ss_pred HHHHhc-CCceEEEEecCCCc
Q 005181 117 LRDHLK-DKSYMVVFDDVWKI 136 (710)
Q Consensus 117 ~~~~l~-~~~~LlvlDdv~~~ 136 (710)
++...+ ...-++|+|.+...
T Consensus 453 ~~~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 453 CDALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGGC
T ss_pred HHHHHHhcCCcEEEECCHHHh
Confidence 655443 34568999998543
No 473
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.24 E-value=0.072 Score=52.01 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=23.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++..
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 445678999999999999999999876
No 474
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.24 E-value=0.08 Score=49.90 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
......|+|.|.+|+|||||+.+++..
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 345688999999999999999999865
No 475
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.22 E-value=0.066 Score=55.13 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...+.|+|++|+|||++|+.+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999876
No 476
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.21 E-value=0.076 Score=48.93 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-.|+|.|+.|+|||||++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999765
No 477
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.19 E-value=0.12 Score=46.42 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.....|+|.|.+|+|||||+.++...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667899999999999999999765
No 478
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.15 E-value=0.062 Score=51.56 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKE 79 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~ 79 (710)
..++.|.|.+|+|||++|.+++.+. .......++|++....
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEER 70 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccCC
Confidence 4688999999999999999987542 1222345777776543
No 479
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.06 E-value=0.04 Score=57.49 Aligned_cols=39 Identities=31% Similarity=0.283 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVG 77 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~ 77 (710)
..++|+|+|++|+||||++.+++.... ..-..++.+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~--~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ--KRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH--HHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEecc
Confidence 356999999999999999999987742 222346666554
No 480
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.04 E-value=0.073 Score=46.99 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+.|.|.|++|+||||+|.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 467889999999999999999765
No 481
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.03 E-value=0.13 Score=53.04 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
-..++|.|.+|+|||+|+.++++..
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~ 171 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQA 171 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHC
T ss_pred CCEEEEecCCCCCchHHHHHHHHHH
Confidence 3466799999999999999998774
No 482
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.98 E-value=0.057 Score=52.40 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 36 SERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 36 ~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.....|+|.|+.|+||||+|+.+++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998776
No 483
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.96 E-value=0.082 Score=53.91 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.++|+|.||.|+||||||.+++..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHH
Confidence 358999999999999999999775
No 484
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.90 E-value=0.11 Score=48.53 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCCc
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNSE 62 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~~ 62 (710)
......|+|.|+.|+||||+++.+++..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3446789999999999999999998874
No 485
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.88 E-value=0.088 Score=50.27 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...|+|.|+.|+||||+++.+++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999876
No 486
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.86 E-value=0.082 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..|+|.|.+|+|||||+.+++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999765
No 487
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.81 E-value=0.098 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..|+|.|++|+|||||+.+++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 488
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.81 E-value=0.097 Score=51.59 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCCcccccCcCcEEEEEeCCCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNSEGLKTHFNCRAWITVGKEY 80 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~~~~~~~f~~~~~v~~~~~~ 80 (710)
++|+|.|-||+||||+|..++.... ..-..++.++++...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La--~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALA--EMGKKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEECSSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHH--HCCCeEEEEecCCCC
Confidence 6788899999999999999987742 223357777776543
No 489
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.79 E-value=0.08 Score=51.45 Aligned_cols=22 Identities=45% Similarity=0.838 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 005181 40 VVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 40 ~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.++|.|+.|+|||||++.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998754
No 490
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.76 E-value=0.091 Score=53.02 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+.-.+++|.|+.|+|||||++.++.-
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 445679999999999999999999886
No 491
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.75 E-value=0.099 Score=50.60 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
..++++.|.+|+||||++.+++..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHH
Confidence 578899999999999999999865
No 492
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.71 E-value=0.1 Score=49.60 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...+|+|.|+.|+||||+++.++..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998764
No 493
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.66 E-value=0.097 Score=51.35 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+...+++|.|+.|+|||||++.++.-
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 455679999999999999999999876
No 494
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.66 E-value=0.13 Score=52.44 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
.++..+|+|.|.+|+||||++.+++..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998765
No 495
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.66 E-value=0.092 Score=50.73 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-+ ..+++|.|+.|+|||||++.++..
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 44 678999999999999999999876
No 496
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.65 E-value=0.15 Score=46.51 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=27.2
Q ss_pred eeecccchhhc-cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 24 FSGKEDNNQLI-QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 24 ~vGre~~~~~i-~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
|++........ ......|+|.|.+|+|||||+.++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 8 LVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEECSTTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred HHHHhcChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 33433334444 344567889999999999999999876
No 497
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.61 E-value=0.14 Score=46.72 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 35 QSERSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 35 ~~~~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
......|+|.|.+|+|||||+.++...
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678899999999999999999875
No 498
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.58 E-value=0.11 Score=49.76 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHhhCC
Q 005181 38 RSVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 38 ~~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
...+.|+||+|.|||.+|.++++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHhh
Confidence 568999999999999999999874
No 499
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.54 E-value=0.1 Score=46.58 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhhCC
Q 005181 39 SVVAVVGEGGLGKTTVAGKIFNS 61 (710)
Q Consensus 39 ~~i~i~G~~GvGKTtla~~~~~~ 61 (710)
-.|+|.|.+|+|||||+.++...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46889999999999999999875
No 500
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.53 E-value=0.16 Score=52.85 Aligned_cols=54 Identities=9% Similarity=0.137 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHhhCCcccccC--cCcEEEEEeCCCCC-HHHHHHHHH
Q 005181 37 ERSVVAVVGEGGLGKTTVAGKIFNSEGLKTH--FNCRAWITVGKEYK-KNDLLRTIL 90 (710)
Q Consensus 37 ~~~~i~i~G~~GvGKTtla~~~~~~~~~~~~--f~~~~~v~~~~~~~-~~~~~~~i~ 90 (710)
+-..++|.|.+|+|||+|+.++++.....+. -+.++|+-+..... ..++.+++.
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~ 207 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFE 207 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHH
Confidence 3456678899999999999998876322111 13566776665432 334444443
Done!