Query 005182
Match_columns 710
No_of_seqs 301 out of 1622
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 19:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 8E-179 2E-183 1530.5 61.9 670 33-708 24-703 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 2E-147 4E-152 1226.2 37.6 603 28-708 9-614 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.2E-88 2.6E-93 728.9 19.1 296 45-349 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 2.9E-35 6.4E-40 336.8 10.4 287 39-335 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.9 3E-21 6.5E-26 212.3 15.0 263 60-352 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 2E-13 4.3E-18 145.9 18.3 192 39-271 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.4 1.4E-11 3E-16 144.0 25.2 160 37-231 276-449 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.3 2.2E-11 4.8E-16 149.3 17.6 186 37-266 318-514 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.3 7.2E-11 1.6E-15 144.7 18.1 150 37-231 334-489 (1027)
10 COG3250 LacZ Beta-galactosidas 99.1 2.1E-09 4.5E-14 127.9 15.9 120 37-198 284-409 (808)
11 PF00150 Cellulase: Cellulase 99.0 9.5E-09 2.1E-13 107.4 15.5 161 49-231 4-172 (281)
12 PF02837 Glyco_hydro_2_N: Glyc 98.9 1.2E-08 2.7E-13 99.4 10.4 99 475-579 64-164 (167)
13 PF13364 BetaGal_dom4_5: Beta- 98.8 1.5E-08 3.2E-13 93.3 10.0 77 475-558 31-110 (111)
14 PF03198 Glyco_hydro_72: Gluca 98.3 1E-05 2.3E-10 86.2 13.5 157 33-227 5-179 (314)
15 PRK10150 beta-D-glucuronidase; 98.3 3.9E-06 8.4E-11 98.6 11.0 114 462-581 45-179 (604)
16 smart00633 Glyco_10 Glycosyl h 98.1 1.1E-05 2.4E-10 84.6 8.4 117 91-232 3-126 (254)
17 PRK10340 ebgA cryptic beta-D-g 98.0 1.7E-05 3.8E-10 98.1 10.8 95 478-581 108-206 (1021)
18 PRK09525 lacZ beta-D-galactosi 98.0 2.4E-05 5.2E-10 96.8 11.2 95 478-581 119-218 (1027)
19 TIGR03356 BGL beta-galactosida 97.9 2.4E-05 5.3E-10 88.2 8.4 96 68-175 54-150 (427)
20 PLN02705 beta-amylase 97.7 9.7E-05 2.1E-09 84.0 8.2 80 66-151 266-357 (681)
21 PLN00197 beta-amylase; Provisi 97.7 0.00032 7E-09 79.4 11.8 80 66-151 125-216 (573)
22 PLN02905 beta-amylase 97.6 0.00014 2.9E-09 83.1 8.5 79 67-151 285-375 (702)
23 PLN02801 beta-amylase 97.6 0.00016 3.5E-09 81.2 8.6 80 66-151 35-126 (517)
24 PF13204 DUF4038: Protein of u 97.6 0.00024 5.2E-09 76.2 9.6 225 43-297 2-274 (289)
25 PLN02803 beta-amylase 97.6 0.0002 4.3E-09 80.9 8.6 83 66-152 105-197 (548)
26 PF13364 BetaGal_dom4_5: Beta- 97.6 7.8E-05 1.7E-09 68.7 4.4 47 627-676 34-84 (111)
27 PLN02161 beta-amylase 97.5 0.00036 7.8E-09 78.4 10.1 83 66-152 115-207 (531)
28 PF01373 Glyco_hydro_14: Glyco 97.3 0.00033 7.1E-09 77.4 5.9 115 69-192 17-152 (402)
29 PLN02998 beta-glucosidase 97.2 0.00017 3.7E-09 82.8 3.2 153 11-175 2-179 (497)
30 PF07745 Glyco_hydro_53: Glyco 97.2 0.0013 2.7E-08 71.8 9.0 139 71-232 27-178 (332)
31 PF00232 Glyco_hydro_1: Glycos 97.2 0.00045 9.8E-09 78.6 5.4 96 68-175 58-155 (455)
32 COG3693 XynA Beta-1,4-xylanase 97.0 0.0031 6.7E-08 67.6 9.4 133 77-232 55-194 (345)
33 PF00331 Glyco_hydro_10: Glyco 96.9 0.00098 2.1E-08 72.5 5.3 158 55-233 11-180 (320)
34 PRK15014 6-phospho-beta-glucos 96.9 0.0023 4.9E-08 73.4 8.5 96 68-175 69-167 (477)
35 PRK09852 cryptic 6-phospho-bet 96.9 0.0024 5.2E-08 73.1 8.2 96 68-175 71-169 (474)
36 PF14488 DUF4434: Domain of un 96.7 0.019 4.1E-07 56.8 11.8 137 63-229 15-159 (166)
37 PRK13511 6-phospho-beta-galact 96.6 0.0057 1.2E-07 70.0 8.5 96 68-175 54-150 (469)
38 TIGR01233 lacG 6-phospho-beta- 96.6 0.0065 1.4E-07 69.5 8.7 96 68-175 53-149 (467)
39 PRK09593 arb 6-phospho-beta-gl 96.5 0.0084 1.8E-07 68.8 8.8 96 68-175 73-171 (478)
40 COG2730 BglC Endoglucanase [Ca 96.5 0.0086 1.9E-07 67.3 8.6 119 66-198 66-193 (407)
41 PLN02814 beta-glucosidase 96.4 0.0032 7E-08 72.5 4.8 96 68-175 77-174 (504)
42 PRK09589 celA 6-phospho-beta-g 96.4 0.0099 2.1E-07 68.2 8.4 96 68-175 67-165 (476)
43 PLN02849 beta-glucosidase 96.1 0.0055 1.2E-07 70.7 4.8 96 68-175 79-176 (503)
44 COG3867 Arabinogalactan endo-1 96.1 0.04 8.6E-07 58.5 10.3 115 70-197 65-182 (403)
45 KOG0496 Beta-galactosidase [Ca 95.9 0.077 1.7E-06 61.8 12.6 71 478-557 556-627 (649)
46 KOG2230 Predicted beta-mannosi 95.9 0.098 2.1E-06 59.7 12.8 148 43-232 327-494 (867)
47 PF14871 GHL6: Hypothetical gl 95.4 0.089 1.9E-06 50.1 9.2 97 72-173 4-122 (132)
48 PF02055 Glyco_hydro_30: O-Gly 95.2 0.14 3.1E-06 59.1 11.6 334 52-413 75-491 (496)
49 COG2723 BglB Beta-glucosidase/ 95.1 0.027 5.8E-07 63.7 5.0 96 68-175 59-157 (460)
50 COG1649 Uncharacterized protei 95.0 0.16 3.6E-06 56.9 10.8 122 66-197 62-210 (418)
51 PF02837 Glyco_hydro_2_N: Glyc 94.9 0.066 1.4E-06 52.0 6.8 42 627-668 67-111 (167)
52 PRK09936 hypothetical protein; 94.1 0.2 4.4E-06 53.4 8.5 59 63-127 33-92 (296)
53 smart00812 Alpha_L_fucos Alpha 93.3 14 0.00029 41.6 21.6 250 63-362 79-342 (384)
54 KOG2024 Beta-Glucuronidase GUS 93.2 0.2 4.4E-06 52.5 6.5 67 464-531 70-139 (297)
55 PF02638 DUF187: Glycosyl hydr 92.8 0.38 8.3E-06 52.3 8.4 117 66-194 17-162 (311)
56 TIGR01515 branching_enzym alph 92.6 1.6 3.4E-05 52.0 13.8 53 74-127 163-226 (613)
57 smart00642 Aamy Alpha-amylase 92.2 0.38 8.2E-06 47.5 6.8 65 70-134 21-97 (166)
58 COG3934 Endo-beta-mannanase [C 90.8 0.19 4.1E-06 56.7 3.3 167 45-230 3-181 (587)
59 PRK05402 glycogen branching en 90.4 2.6 5.7E-05 51.1 12.8 54 74-127 272-335 (726)
60 PRK14706 glycogen branching en 90.2 5.4 0.00012 47.8 14.9 54 74-127 174-237 (639)
61 PF05913 DUF871: Bacterial pro 89.9 0.47 1E-05 52.6 5.4 72 56-133 2-73 (357)
62 PF08531 Bac_rhamnosid_N: Alph 89.8 1.9 4E-05 42.8 9.1 55 501-558 5-68 (172)
63 PRK12568 glycogen branching en 89.3 6.5 0.00014 47.6 14.6 56 72-129 274-341 (730)
64 TIGR00542 hxl6Piso_put hexulos 87.4 7.7 0.00017 41.0 12.5 131 67-225 15-149 (279)
65 PF00128 Alpha-amylase: Alpha 86.5 0.82 1.8E-05 47.9 4.5 57 71-127 7-72 (316)
66 PLN03059 beta-galactosidase; P 86.1 1.2 2.7E-05 54.0 6.1 69 480-557 620-715 (840)
67 PRK14705 glycogen branching en 85.7 14 0.00031 47.2 15.3 56 72-127 770-835 (1224)
68 cd00019 AP2Ec AP endonuclease 85.1 8.6 0.00019 40.6 11.4 54 68-125 10-64 (279)
69 PRK13210 putative L-xylulose 5 85.1 8.3 0.00018 40.5 11.3 132 68-225 16-149 (284)
70 PRK12313 glycogen branching en 85.1 1.7 3.6E-05 51.9 6.6 54 74-127 177-240 (633)
71 PLN02447 1,4-alpha-glucan-bran 84.8 1.6 3.4E-05 52.8 6.2 61 68-129 251-322 (758)
72 COG0296 GlgB 1,4-alpha-glucan 83.7 2 4.4E-05 50.8 6.3 59 66-126 163-233 (628)
73 PF01229 Glyco_hydro_39: Glyco 83.5 2.9 6.3E-05 48.3 7.5 69 57-128 28-105 (486)
74 PRK09441 cytoplasmic alpha-amy 83.4 2.1 4.6E-05 49.2 6.4 60 68-127 19-101 (479)
75 PF14307 Glyco_tran_WbsX: Glyc 83.4 11 0.00025 41.4 11.8 141 65-232 55-198 (345)
76 cd00311 TIM Triosephosphate is 83.2 4.4 9.5E-05 42.6 8.0 117 5-128 2-125 (242)
77 TIGR02402 trehalose_TreZ malto 82.6 2.3 5E-05 49.8 6.3 53 72-127 115-180 (542)
78 PF13199 Glyco_hydro_66: Glyco 81.6 35 0.00076 40.3 15.3 79 68-146 118-211 (559)
79 PF13200 DUF4015: Putative gly 81.5 5 0.00011 43.9 7.9 112 66-178 11-137 (316)
80 PF08308 PEGA: PEGA domain; I 80.7 3.7 7.9E-05 34.2 5.2 40 503-552 3-42 (71)
81 PLN02960 alpha-amylase 79.5 3.8 8.3E-05 50.2 6.7 57 71-127 420-486 (897)
82 PRK01060 endonuclease IV; Prov 79.3 14 0.00031 38.8 10.5 84 70-175 14-99 (281)
83 TIGR02403 trehalose_treC alpha 79.2 3 6.4E-05 48.9 5.6 57 69-127 28-95 (543)
84 TIGR02104 pulA_typeI pullulana 79.0 3.5 7.6E-05 49.0 6.2 55 72-127 168-249 (605)
85 PF01261 AP_endonuc_2: Xylose 78.7 3.4 7.4E-05 40.7 5.2 125 74-225 1-128 (213)
86 TIGR02631 xylA_Arthro xylose i 77.9 36 0.00078 38.2 13.5 92 66-175 30-125 (382)
87 PF06832 BiPBP_C: Penicillin-B 77.7 4 8.7E-05 35.7 4.8 51 501-558 33-83 (89)
88 PRK08673 3-deoxy-7-phosphohept 77.1 9.2 0.0002 42.2 8.3 92 27-127 70-164 (335)
89 PF02679 ComA: (2R)-phospho-3- 76.9 3.6 7.9E-05 43.2 4.9 52 67-128 83-134 (244)
90 COG3250 LacZ Beta-galactosidas 76.5 9.1 0.0002 47.0 8.8 65 461-529 44-109 (808)
91 TIGR03234 OH-pyruv-isom hydrox 76.2 46 0.001 34.4 13.0 43 69-125 15-57 (254)
92 PRK10785 maltodextrin glucosid 76.0 5.5 0.00012 47.3 6.8 57 71-127 182-246 (598)
93 PRK09505 malS alpha-amylase; R 74.4 6.3 0.00014 47.5 6.7 58 70-127 232-312 (683)
94 PRK10933 trehalose-6-phosphate 74.1 6.6 0.00014 46.2 6.7 55 70-127 35-101 (551)
95 TIGR01531 glyc_debranch glycog 73.2 12 0.00025 48.2 8.7 112 44-161 103-234 (1464)
96 TIGR02456 treS_nterm trehalose 73.0 5.1 0.00011 46.9 5.4 56 69-127 29-96 (539)
97 cd06593 GH31_xylosidase_YicI Y 72.5 13 0.00028 40.2 8.0 70 65-134 21-93 (308)
98 PLN00196 alpha-amylase; Provis 72.5 17 0.00036 41.5 9.2 57 71-127 47-112 (428)
99 PF01791 DeoC: DeoC/LacD famil 71.8 1.8 4E-05 44.8 1.2 54 71-127 79-132 (236)
100 PRK09856 fructoselysine 3-epim 70.8 56 0.0012 34.1 12.3 130 68-225 13-145 (275)
101 PLN02361 alpha-amylase 70.3 9.9 0.00021 43.0 6.7 57 71-127 32-96 (401)
102 smart00518 AP2Ec AP endonuclea 70.2 35 0.00076 35.7 10.5 82 70-175 12-94 (273)
103 COG3589 Uncharacterized conser 70.0 9.3 0.0002 41.9 6.0 72 56-134 4-76 (360)
104 PRK13209 L-xylulose 5-phosphat 70.0 63 0.0014 34.0 12.5 126 68-225 21-154 (283)
105 PRK13398 3-deoxy-7-phosphohept 69.8 24 0.00052 37.6 9.2 85 34-127 11-98 (266)
106 cd04908 ACT_Bt0572_1 N-termina 69.6 15 0.00033 30.0 6.1 55 67-125 12-66 (66)
107 PRK14565 triosephosphate isome 69.4 20 0.00044 37.6 8.3 51 73-129 77-127 (237)
108 TIGR03849 arch_ComA phosphosul 69.1 9.8 0.00021 39.9 5.8 52 68-129 71-122 (237)
109 TIGR02100 glgX_debranch glycog 67.5 8.9 0.00019 46.3 5.9 55 73-127 189-265 (688)
110 PRK09997 hydroxypyruvate isome 67.5 73 0.0016 33.2 12.2 42 70-125 17-58 (258)
111 PF03659 Glyco_hydro_71: Glyco 67.1 14 0.0003 41.6 7.0 53 66-127 15-67 (386)
112 cd06592 GH31_glucosidase_KIAA1 66.6 39 0.00086 36.5 10.2 69 63-134 25-97 (303)
113 TIGR02401 trehalose_TreY malto 66.4 13 0.00027 45.7 6.9 64 66-129 14-87 (825)
114 COG3623 SgaU Putative L-xylulo 66.4 27 0.0006 36.6 8.2 98 66-192 16-115 (287)
115 PRK14510 putative bifunctional 65.9 9.3 0.0002 49.1 5.9 56 72-127 191-267 (1221)
116 PRK12677 xylose isomerase; Pro 65.8 56 0.0012 36.8 11.4 90 68-175 31-124 (384)
117 PF14587 Glyco_hydr_30_2: O-Gl 64.5 52 0.0011 37.0 10.6 122 96-232 93-227 (384)
118 cd06565 GH20_GcnA-like Glycosy 63.1 37 0.0008 36.8 9.1 59 66-128 15-81 (301)
119 KOG0626 Beta-glucosidase, lact 63.1 15 0.00033 42.6 6.3 113 69-191 92-208 (524)
120 PTZ00333 triosephosphate isome 62.1 38 0.00082 36.0 8.7 49 74-128 82-130 (255)
121 PF00121 TIM: Triosephosphate 61.7 6.6 0.00014 41.4 3.0 118 4-128 1-125 (244)
122 PF14683 CBM-like: Polysacchar 61.7 18 0.0004 35.8 5.9 54 500-555 78-152 (167)
123 PRK14507 putative bifunctional 61.6 16 0.00035 48.2 6.9 61 66-129 756-829 (1693)
124 PRK14511 maltooligosyl trehalo 61.4 18 0.00039 44.7 6.9 60 66-129 18-91 (879)
125 PF10435 BetaGal_dom2: Beta-ga 61.3 18 0.0004 36.4 5.9 65 366-430 13-100 (183)
126 COG1306 Uncharacterized conser 61.3 16 0.00036 39.4 5.7 62 66-127 75-144 (400)
127 TIGR02103 pullul_strch alpha-1 61.2 15 0.00032 45.7 6.2 21 107-127 404-424 (898)
128 PRK00042 tpiA triosephosphate 60.5 16 0.00035 38.6 5.6 50 73-128 78-127 (250)
129 TIGR02102 pullulan_Gpos pullul 59.3 16 0.00034 46.4 6.1 21 107-127 555-575 (1111)
130 PRK03705 glycogen debranching 58.4 17 0.00036 43.8 5.9 55 73-127 184-262 (658)
131 cd06563 GH20_chitobiase-like T 57.8 43 0.00092 37.1 8.7 71 44-127 4-106 (357)
132 PF02065 Melibiase: Melibiase; 57.7 52 0.0011 37.2 9.4 89 61-149 51-148 (394)
133 COG0149 TpiA Triosephosphate i 57.5 56 0.0012 34.6 8.9 50 74-129 81-130 (251)
134 PF04914 DltD_C: DltD C-termin 56.8 24 0.00052 33.6 5.6 53 107-177 36-88 (130)
135 cd06602 GH31_MGAM_SI_GAA This 55.9 96 0.0021 34.2 10.9 74 60-134 13-93 (339)
136 cd06589 GH31 The enzymes of gl 55.8 1.8E+02 0.0038 30.7 12.6 65 66-131 22-90 (265)
137 TIGR00419 tim triosephosphate 55.7 24 0.00052 36.3 5.7 45 73-127 73-117 (205)
138 PLN02877 alpha-amylase/limit d 55.2 23 0.00049 44.3 6.4 21 107-127 466-486 (970)
139 PRK13962 bifunctional phosphog 55.1 37 0.00081 40.7 8.0 50 73-128 473-522 (645)
140 smart00481 POLIIIAc DNA polyme 54.4 35 0.00077 27.9 5.6 45 69-126 16-60 (67)
141 TIGR00677 fadh2_euk methylenet 53.9 42 0.00092 36.0 7.6 108 54-175 130-250 (281)
142 cd06564 GH20_DspB_LnbB-like Gl 53.7 39 0.00085 36.9 7.4 59 66-127 15-102 (326)
143 cd06547 GH85_ENGase Endo-beta- 53.3 26 0.00057 38.7 6.0 112 84-229 32-148 (339)
144 PF07691 PA14: PA14 domain; I 53.1 94 0.002 28.8 9.1 68 480-557 47-122 (145)
145 PF12876 Cellulase-like: Sugar 52.2 20 0.00043 31.3 4.0 48 182-229 6-62 (88)
146 PRK12858 tagatose 1,6-diphosph 51.2 24 0.00052 39.0 5.3 62 64-127 102-163 (340)
147 PRK14566 triosephosphate isome 50.9 44 0.00095 35.6 6.9 49 74-128 88-136 (260)
148 PRK09875 putative hydrolase; P 50.7 86 0.0019 34.0 9.3 89 38-146 7-95 (292)
149 cd06591 GH31_xylosidase_XylS X 50.6 27 0.00059 38.0 5.6 66 66-132 22-91 (319)
150 PRK14582 pgaB outer membrane N 49.8 63 0.0014 39.1 8.8 127 52-196 313-468 (671)
151 COG5309 Exo-beta-1,3-glucanase 49.6 2.2E+02 0.0047 30.7 11.5 121 66-234 61-181 (305)
152 PRK09856 fructoselysine 3-epim 49.4 25 0.00053 36.9 4.9 58 69-130 91-153 (275)
153 cd06568 GH20_SpHex_like A subg 48.5 38 0.00082 37.2 6.3 75 43-127 3-95 (329)
154 PLN02784 alpha-amylase 47.2 42 0.00091 41.4 6.8 56 71-127 524-588 (894)
155 PRK15492 triosephosphate isome 47.1 40 0.00086 35.9 6.0 50 73-128 86-135 (260)
156 PF12733 Cadherin-like: Cadher 46.9 52 0.0011 28.4 5.8 47 502-557 27-74 (88)
157 PLN02561 triosephosphate isome 46.9 40 0.00087 35.8 5.9 50 73-128 80-129 (253)
158 PLN02429 triosephosphate isome 46.7 36 0.00079 37.2 5.7 50 73-128 139-188 (315)
159 PF01261 AP_endonuc_2: Xylose 46.7 25 0.00054 34.5 4.2 63 67-130 70-135 (213)
160 cd06562 GH20_HexA_HexB-like Be 46.5 91 0.002 34.5 8.9 74 44-127 4-90 (348)
161 TIGR02455 TreS_stutzeri trehal 45.1 57 0.0012 39.1 7.3 75 66-144 76-175 (688)
162 cd02742 GH20_hexosaminidase Be 44.6 67 0.0015 34.7 7.4 60 65-127 13-92 (303)
163 KOG2230 Predicted beta-mannosi 44.6 45 0.00098 39.0 6.1 54 500-556 93-146 (867)
164 KOG0259 Tyrosine aminotransfer 44.5 25 0.00054 39.4 4.0 90 33-126 147-238 (447)
165 cd06598 GH31_transferase_CtsZ 44.1 42 0.00091 36.5 5.8 67 66-132 22-95 (317)
166 cd06545 GH18_3CO4_chitinase Th 44.1 1E+02 0.0022 32.2 8.5 96 98-222 36-132 (253)
167 cd06416 GH25_Lys1-like Lys-1 i 44.0 49 0.0011 33.2 5.9 89 56-147 54-157 (196)
168 COG0366 AmyA Glycosidases [Car 43.5 32 0.00069 39.1 5.0 56 72-127 33-97 (505)
169 PF10566 Glyco_hydro_97: Glyco 43.4 82 0.0018 33.9 7.6 115 66-188 30-160 (273)
170 PF11324 DUF3126: Protein of u 43.2 69 0.0015 26.8 5.4 31 509-539 26-58 (63)
171 COG5520 O-Glycosyl hydrolase [ 42.9 1.7E+02 0.0037 32.7 9.9 86 116-222 111-206 (433)
172 PRK14567 triosephosphate isome 42.6 52 0.0011 34.9 6.0 49 74-128 78-126 (253)
173 cd06603 GH31_GANC_GANAB_alpha 42.6 41 0.00089 36.9 5.5 68 66-134 22-91 (339)
174 cd06601 GH31_lyase_GLase GLase 42.2 1.2E+02 0.0026 33.4 9.0 72 60-132 13-89 (332)
175 cd06600 GH31_MGAM-like This fa 41.2 45 0.00098 36.3 5.5 72 60-132 13-89 (317)
176 cd06599 GH31_glycosidase_Aec37 41.2 59 0.0013 35.4 6.4 66 67-132 28-98 (317)
177 PRK13210 putative L-xylulose 5 41.1 42 0.0009 35.2 5.1 60 68-128 94-154 (284)
178 smart00758 PA14 domain in bact 40.5 1.1E+02 0.0023 28.4 7.3 66 480-554 45-111 (136)
179 PF02228 Gag_p19: Major core p 40.4 14 0.00031 31.9 1.1 39 66-121 20-58 (92)
180 PRK05265 pyridoxine 5'-phospha 40.4 46 0.00099 35.0 5.0 48 68-133 113-161 (239)
181 cd06570 GH20_chitobiase-like_1 40.2 1E+02 0.0022 33.6 8.0 60 65-127 15-88 (311)
182 PRK09997 hydroxypyruvate isome 39.8 43 0.00093 34.9 4.9 60 68-127 85-144 (258)
183 PRK09989 hypothetical protein; 39.6 53 0.0012 34.2 5.6 43 69-125 16-58 (258)
184 COG1523 PulA Type II secretory 39.5 46 0.001 40.3 5.6 55 73-127 205-285 (697)
185 PF01055 Glyco_hydro_31: Glyco 38.9 45 0.00098 37.7 5.3 68 66-134 41-110 (441)
186 cd00003 PNPsynthase Pyridoxine 38.0 46 0.001 34.9 4.6 49 68-134 110-159 (234)
187 PF03170 BcsB: Bacterial cellu 37.9 1.2E+02 0.0026 36.1 8.7 48 510-557 62-112 (605)
188 PRK12595 bifunctional 3-deoxy- 36.9 1.5E+02 0.0034 33.0 8.9 90 29-127 97-189 (360)
189 KOG1412 Aspartate aminotransfe 36.6 78 0.0017 34.7 6.1 118 66-231 131-249 (410)
190 TIGR03234 OH-pyruv-isom hydrox 36.4 50 0.0011 34.2 4.7 59 68-127 84-143 (254)
191 cd06418 GH25_BacA-like BacA is 36.3 2.2E+02 0.0047 29.4 9.2 90 66-177 50-140 (212)
192 cd06597 GH31_transferase_CtsY 35.8 75 0.0016 35.0 6.2 73 60-132 13-110 (340)
193 KOG0622 Ornithine decarboxylas 35.7 66 0.0014 36.4 5.6 63 65-128 190-253 (448)
194 PRK08645 bifunctional homocyst 35.7 1.1E+02 0.0024 36.6 7.9 109 51-175 461-578 (612)
195 cd06604 GH31_glucosidase_II_Ma 35.5 64 0.0014 35.4 5.6 73 60-133 13-90 (339)
196 cd08560 GDPD_EcGlpQ_like_1 Gly 35.3 99 0.0022 34.5 7.0 53 69-127 246-298 (356)
197 PLN02450 1-aminocyclopropane-1 35.2 1.1E+02 0.0024 35.1 7.7 60 63-126 171-230 (468)
198 smart00854 PGA_cap Bacterial c 34.9 4.4E+02 0.0095 27.2 11.4 45 71-124 63-107 (239)
199 PRK13396 3-deoxy-7-phosphohept 34.5 2.4E+02 0.0052 31.5 9.7 94 27-127 72-172 (352)
200 PRK12331 oxaloacetate decarbox 34.3 93 0.002 35.8 6.8 55 61-127 89-143 (448)
201 TIGR01361 DAHP_synth_Bsub phos 34.0 1.1E+02 0.0024 32.5 6.9 85 34-127 9-96 (260)
202 cd06595 GH31_xylosidase_XylS-l 33.1 89 0.0019 33.6 6.1 66 66-131 23-98 (292)
203 PLN02607 1-aminocyclopropane-1 33.0 1.7E+02 0.0037 33.4 8.7 61 63-127 180-240 (447)
204 cd01299 Met_dep_hydrolase_A Me 32.7 91 0.002 33.6 6.2 61 66-127 118-180 (342)
205 KOG0470 1,4-alpha-glucan branc 32.6 45 0.00098 40.2 3.9 57 71-127 258-331 (757)
206 TIGR00559 pdxJ pyridoxine 5'-p 32.4 64 0.0014 33.9 4.6 48 68-133 110-158 (237)
207 cd04882 ACT_Bt0572_2 C-termina 32.3 87 0.0019 24.7 4.6 55 67-123 10-64 (65)
208 PRK09267 flavodoxin FldA; Vali 32.0 3.4E+02 0.0074 26.2 9.6 74 48-124 44-117 (169)
209 PF05706 CDKN3: Cyclin-depende 31.4 1.6E+02 0.0034 29.5 6.9 50 68-127 58-107 (168)
210 cd06569 GH20_Sm-chitobiase-lik 31.3 1E+02 0.0022 35.4 6.5 73 42-127 6-117 (445)
211 TIGR00433 bioB biotin syntheta 31.1 75 0.0016 33.7 5.1 52 71-126 123-177 (296)
212 cd07381 MPP_CapA CapA and rela 31.1 5.7E+02 0.012 26.2 11.6 126 71-225 67-210 (239)
213 PRK09432 metF 5,10-methylenete 31.1 1.1E+02 0.0025 33.0 6.5 87 73-176 168-266 (296)
214 PF07755 DUF1611: Protein of u 30.9 35 0.00075 37.2 2.5 61 52-127 34-95 (301)
215 COG2876 AroA 3-deoxy-D-arabino 30.9 1.5E+02 0.0034 31.7 7.1 58 66-127 57-116 (286)
216 PRK13125 trpA tryptophan synth 30.9 90 0.002 32.6 5.5 48 71-129 91-138 (244)
217 TIGR02635 RhaI_grampos L-rhamn 30.7 3.8E+02 0.0083 30.2 10.7 161 19-227 7-173 (378)
218 PF08924 DUF1906: Domain of un 30.6 1.7E+02 0.0036 28.0 6.8 89 66-176 36-127 (136)
219 TIGR00542 hxl6Piso_put hexulos 30.3 79 0.0017 33.3 5.1 55 69-127 95-153 (279)
220 PF03644 Glyco_hydro_85: Glyco 30.0 1E+02 0.0022 33.7 5.9 114 84-229 28-143 (311)
221 TIGR00587 nfo apurinic endonuc 30.0 2.8E+02 0.006 29.4 9.1 83 71-175 14-98 (274)
222 PF07488 Glyco_hydro_67M: Glyc 29.9 3.9E+02 0.0085 29.4 10.0 137 66-225 55-191 (328)
223 TIGR00676 fadh2 5,10-methylene 29.9 1.9E+02 0.0041 30.8 7.8 107 53-175 125-246 (272)
224 PF11008 DUF2846: Protein of u 29.8 98 0.0021 28.5 5.0 37 511-554 41-77 (117)
225 PF00834 Ribul_P_3_epim: Ribul 29.4 1.2E+02 0.0025 31.1 5.9 95 59-176 61-162 (201)
226 PF08306 Glyco_hydro_98M: Glyc 29.0 39 0.00085 36.9 2.4 60 54-124 104-170 (324)
227 cd00019 AP2Ec AP endonuclease 28.7 59 0.0013 34.2 3.8 58 68-129 85-145 (279)
228 COG1735 Php Predicted metal-de 28.6 2.3E+02 0.005 31.0 8.0 156 35-232 14-173 (316)
229 PRK09250 fructose-bisphosphate 28.4 78 0.0017 35.2 4.6 48 74-127 152-199 (348)
230 cd07937 DRE_TIM_PC_TC_5S Pyruv 28.3 1.4E+02 0.0031 31.8 6.6 50 65-126 88-137 (275)
231 PRK04302 triosephosphate isome 28.1 1.2E+02 0.0026 31.2 5.8 63 56-129 59-123 (223)
232 PTZ00372 endonuclease 4-like p 28.1 2.8E+02 0.0061 31.7 9.1 79 71-175 144-228 (413)
233 PF02606 LpxK: Tetraacyldisacc 28.0 1.3E+02 0.0029 33.0 6.4 63 47-127 224-286 (326)
234 PF14701 hDGE_amylase: glucano 27.3 2.6E+02 0.0056 32.1 8.6 109 61-175 13-143 (423)
235 PRK10076 pyruvate formate lyas 27.1 2.9E+02 0.0063 28.4 8.4 125 67-225 53-209 (213)
236 PRK08227 autoinducer 2 aldolas 27.1 74 0.0016 34.0 4.1 48 72-125 98-145 (264)
237 COG1891 Uncharacterized protei 27.0 24 0.00051 35.4 0.4 66 55-126 118-186 (235)
238 PF00728 Glyco_hydro_20: Glyco 26.7 1E+02 0.0022 33.5 5.3 62 66-127 16-93 (351)
239 PRK14040 oxaloacetate decarbox 26.7 1.1E+02 0.0024 36.5 5.9 54 60-125 89-142 (593)
240 PTZ00372 endonuclease 4-like p 26.4 3.7E+02 0.0079 30.7 9.6 85 44-129 149-241 (413)
241 PF03740 PdxJ: Pyridoxal phosp 26.3 58 0.0012 34.3 3.0 49 68-134 111-160 (239)
242 TIGR00539 hemN_rel putative ox 26.1 91 0.002 34.4 4.8 48 71-122 100-151 (360)
243 TIGR03128 RuMP_HxlA 3-hexulose 26.1 1.5E+02 0.0032 29.7 6.0 41 73-126 68-108 (206)
244 PRK06703 flavodoxin; Provision 26.0 3.4E+02 0.0073 25.7 8.2 103 48-175 46-148 (151)
245 PRK08883 ribulose-phosphate 3- 25.9 1.4E+02 0.0031 30.8 5.9 52 59-127 62-113 (220)
246 COG3684 LacD Tagatose-1,6-bisp 25.7 76 0.0016 33.9 3.7 51 74-127 117-167 (306)
247 PRK05660 HemN family oxidoredu 25.6 92 0.002 34.8 4.8 48 71-122 107-158 (378)
248 PF04244 DPRP: Deoxyribodipyri 25.6 57 0.0012 34.0 2.9 88 70-187 80-169 (224)
249 cd00544 CobU Adenosylcobinamid 25.5 4.2E+02 0.0091 26.1 8.9 49 163-219 101-149 (169)
250 PRK11114 cellulose synthase re 25.4 2.3E+02 0.0049 34.9 8.4 48 510-557 114-165 (756)
251 CHL00200 trpA tryptophan synth 25.4 1.4E+02 0.0029 32.0 5.7 46 70-129 108-153 (263)
252 PLN02231 alanine transaminase 25.3 1.5E+02 0.0032 34.9 6.6 60 63-126 251-310 (534)
253 COG3915 Uncharacterized protei 25.2 2.6E+02 0.0056 27.1 6.8 82 17-125 4-87 (155)
254 PLN03036 glutamine synthetase; 25.2 1.8E+02 0.0039 33.4 6.9 65 69-139 231-307 (432)
255 PF02811 PHP: PHP domain; Int 25.2 1.3E+02 0.0029 28.5 5.2 46 69-127 17-62 (175)
256 TIGR01698 PUNP purine nucleoti 24.3 1E+02 0.0023 32.3 4.5 41 47-87 47-88 (237)
257 PF01120 Alpha_L_fucos: Alpha- 23.9 9.9E+02 0.021 26.3 15.4 235 72-356 95-343 (346)
258 cd07944 DRE_TIM_HOA_like 4-hyd 23.9 1.3E+02 0.0028 32.0 5.3 45 71-127 85-129 (266)
259 cd04726 KGPDC_HPS 3-Keto-L-gul 23.8 1.7E+02 0.0038 28.9 6.0 45 72-129 68-113 (202)
260 PF03102 NeuB: NeuB family; I 23.4 96 0.0021 32.7 4.1 65 64-128 52-121 (241)
261 PRK14905 triosephosphate isome 23.4 1.6E+02 0.0034 32.9 6.0 49 74-128 88-136 (355)
262 PF02786 CPSase_L_D2: Carbamoy 23.4 1.7E+02 0.0036 30.1 5.8 68 74-169 6-73 (211)
263 PRK13361 molybdenum cofactor b 23.3 2.5E+02 0.0055 30.6 7.6 53 70-126 103-160 (329)
264 cd04883 ACT_AcuB C-terminal AC 23.0 2.7E+02 0.0058 22.5 6.0 56 68-124 13-69 (72)
265 PRK08175 aminotransferase; Val 22.8 1.1E+02 0.0025 33.8 4.9 54 69-126 149-203 (395)
266 PF03170 BcsB: Bacterial cellu 22.8 1.7E+02 0.0036 34.8 6.5 48 510-557 360-411 (605)
267 PLN02826 dihydroorotate dehydr 22.6 1.2E+03 0.025 26.6 14.7 60 55-118 188-250 (409)
268 PRK13209 L-xylulose 5-phosphat 22.4 1.3E+02 0.0027 31.7 4.8 59 69-128 100-159 (283)
269 PF13380 CoA_binding_2: CoA bi 22.3 1.3E+02 0.0028 27.7 4.3 72 37-124 29-106 (116)
270 COG2179 Predicted hydrolase of 22.1 1.8E+02 0.0039 29.1 5.4 45 73-126 19-68 (175)
271 COG2108 Uncharacterized conser 21.9 1.4E+02 0.0031 32.9 5.0 49 70-127 123-171 (353)
272 KOG1643 Triosephosphate isomer 21.9 1.5E+02 0.0033 30.6 4.9 49 74-128 79-127 (247)
273 cd07944 DRE_TIM_HOA_like 4-hyd 21.8 1.6E+02 0.0035 31.2 5.5 66 63-128 15-81 (266)
274 KOG3833 Uncharacterized conser 21.7 1E+02 0.0023 33.7 3.9 53 69-127 444-499 (505)
275 PRK10426 alpha-glucosidase; Pr 21.7 7E+02 0.015 30.1 11.3 63 70-132 223-294 (635)
276 PRK08005 epimerase; Validated 21.7 2E+02 0.0043 29.7 5.9 52 59-127 62-113 (210)
277 PLN02389 biotin synthase 21.7 1.3E+02 0.0028 33.8 4.9 47 69-123 176-229 (379)
278 TIGR03551 F420_cofH 7,8-dideme 21.6 78 0.0017 34.8 3.2 50 71-123 141-195 (343)
279 PF09587 PGA_cap: Bacterial ca 21.5 5.7E+02 0.012 26.5 9.5 78 44-131 122-227 (250)
280 cd02810 DHOD_DHPD_FMN Dihydroo 21.4 1.7E+02 0.0036 31.1 5.6 60 66-129 109-171 (289)
281 cd02871 GH18_chitinase_D-like 21.4 4E+02 0.0086 28.8 8.6 87 107-222 60-146 (312)
282 PRK07366 succinyldiaminopimela 21.3 77 0.0017 35.0 3.1 36 87-126 169-204 (388)
283 cd04724 Tryptophan_synthase_al 21.3 1.9E+02 0.0042 30.2 5.9 43 71-127 94-136 (242)
284 KOG4039 Serine/threonine kinas 21.2 1.4E+02 0.0031 30.4 4.4 67 62-133 103-172 (238)
285 cd06831 PLPDE_III_ODC_like_AZI 21.2 1.1E+02 0.0023 34.6 4.1 67 63-141 145-214 (394)
286 PF03422 CBM_6: Carbohydrate b 21.2 3E+02 0.0065 24.9 6.6 74 478-557 31-112 (125)
287 PRK09860 putative alcohol dehy 21.2 2.3E+02 0.005 31.7 6.8 65 51-128 32-96 (383)
288 TIGR00262 trpA tryptophan synt 21.2 2E+02 0.0043 30.5 5.9 43 71-127 105-147 (256)
289 PRK08195 4-hyroxy-2-oxovalerat 21.1 1.8E+02 0.0039 32.1 5.9 45 71-127 91-135 (337)
290 COG2884 FtsE Predicted ATPase 21.1 82 0.0018 32.4 2.8 15 653-667 55-69 (223)
291 COG1979 Uncharacterized oxidor 20.8 1.7E+02 0.0036 32.5 5.2 47 70-128 47-93 (384)
292 COG0156 BioF 7-keto-8-aminopel 20.6 1.4E+02 0.003 33.8 4.9 79 36-126 123-207 (388)
293 cd01019 ZnuA Zinc binding prot 20.5 1.5E+02 0.0032 31.8 4.9 57 49-127 178-235 (286)
294 cd04740 DHOD_1B_like Dihydroor 20.5 2.1E+02 0.0046 30.4 6.2 60 66-129 100-163 (296)
295 PRK07534 methionine synthase I 20.4 4.1E+02 0.0089 29.3 8.4 101 70-221 191-296 (336)
296 PRK10966 exonuclease subunit S 20.3 6.6E+02 0.014 28.5 10.3 63 53-127 42-108 (407)
297 TIGR03700 mena_SCO4494 putativ 20.2 79 0.0017 34.9 2.8 51 70-123 149-204 (351)
298 PRK08446 coproporphyrinogen II 20.1 2.4E+02 0.0051 31.1 6.6 59 56-122 87-149 (350)
299 PRK08745 ribulose-phosphate 3- 20.1 2.2E+02 0.0048 29.6 5.9 52 59-127 66-117 (223)
300 PF04566 RNA_pol_Rpb2_4: RNA p 20.0 89 0.0019 26.0 2.4 13 515-527 1-13 (63)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=7.5e-179 Score=1530.51 Aligned_cols=670 Identities=76% Similarity=1.276 Sum_probs=623.7
Q ss_pred cccceeEEEecCeEEECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHH
Q 005182 33 SFVKASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRF 112 (710)
Q Consensus 33 ~~~~~~v~~d~~~~~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~f 112 (710)
.+...+|++|+++|+|||||++|+||+|||||++|++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++|
T Consensus 24 ~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~F 103 (840)
T PLN03059 24 SHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKF 103 (840)
T ss_pred ccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 005182 113 IKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (710)
Q Consensus 113 i~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Qi 192 (710)
|++|+|+||||||||||||||||++||+|.||+++|+|++|++||+|+++|++|+++|+++|++++++++|||||||+||
T Consensus 104 l~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQI 183 (840)
T PLN03059 104 IKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQI 183 (840)
T ss_pred HHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred ccccCCccccCCCchHHHHHHHHHHhhhcCCCcceEEecCCCCCCccccCCCCccccccCCCCCCCCccccccccccccc
Q 005182 193 ENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWTEAWTGWFTE 272 (710)
Q Consensus 193 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~P~~~~E~~~gwf~~ 272 (710)
|||||++...++.+|++||+||+++++++|++|||+||++.+++++++++|||.+|+.|.+.++.+|+||||||+|||++
T Consensus 184 ENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~ 263 (840)
T PLN03059 184 ENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTE 263 (840)
T ss_pred cccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhh
Confidence 99999987667778999999999999999999999999998888889999999999999988888999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeecCCCCCCCCCC-ccccccCCCCCCCcCCCCCchhHHHHHHHHHHHH
Q 005182 273 FGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGG-FVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIK 351 (710)
Q Consensus 273 wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~-~~~tSYDy~Apl~E~G~~~~pky~~lr~l~~~i~ 351 (710)
||+++++|+++|++++++++|++|+|++||||||||||||+++|+ +++|||||||||+|+|++++|||.+||++|.+++
T Consensus 264 wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~ 343 (840)
T PLN03059 264 FGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIK 343 (840)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHH
Confidence 999999999999999999999999998899999999999999998 6999999999999999997689999999999999
Q ss_pred hhcCcccCCCCccccCCCcceeEEeecCCCceeEEEeecCCcceeEEEECCceeecCCceeEecCCCCceeeeccccccc
Q 005182 352 LCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQ 431 (710)
Q Consensus 352 ~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~Fl~N~~~~~~~~v~~~~~~~~~p~~sv~il~d~~~~l~~ta~v~~~ 431 (710)
.++++|+..+|....+|+++++++|+..+ .|++|+.|++++.+++|+|+|++|.||+|||||||||+++||||+++.+|
T Consensus 344 ~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q 422 (840)
T PLN03059 344 LCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQ 422 (840)
T ss_pred hcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccc
Confidence 99998988888888899999999999766 79999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeeeccccccccccccccCCCCCCccccCchhhhhCCCCCCcceEEEEEEeecCCCcccccCCCCCeEEEeeccc
Q 005182 432 SSQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGH 511 (710)
Q Consensus 432 ~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~p~~~Eqlg~t~d~tGylwYrt~~~~~~~~~~~~~g~~~~L~l~~~~d 511 (710)
++.+.+.+....+.|++++|++.+...+.+++...++||++.|+|.+||+||||+|.++.++...+++..++|+|.+++|
T Consensus 423 ~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d 502 (840)
T PLN03059 423 SSQMKMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGH 502 (840)
T ss_pred cceeecccccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccCc
Confidence 88776666666679999999943245567888888999999999999999999999987766444667788999999999
Q ss_pred eEEEEECCEEEEEEEcccCCCeEEEecceecCCCccEEEEEEeecCCccccccccccccceecceEEcccCCccccCcCC
Q 005182 512 ALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQ 591 (710)
Q Consensus 512 ~~~VfVNG~~vGs~~g~~~~~~~~~~~~v~Lk~G~N~L~ILven~Gr~NyG~~~~~~~kGI~g~V~L~g~~~~~~~Lt~~ 591 (710)
++||||||+++|+.++......++++.++.|+.|.|+|+|||+||||+|||++|++..|||+|+|.|.+++++..+|++|
T Consensus 503 ~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~~ 582 (840)
T PLN03059 503 ALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGW 582 (840)
T ss_pred EEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceecccC
Confidence 99999999999999998877889999888999999999999999999999999999999999999999987788899999
Q ss_pred ceeeeeccccccccccccCCCCCcccccccccccCCCceEEEEEEEecCCCCeEEEEeCCcceEEEEEcCcccceeeec-
Q 005182 592 KWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKVRIISILSQHILTIFLELIYEQSICINICHILLSADY- 670 (710)
Q Consensus 592 ~W~y~~gL~gE~~~~~~p~~~~~~~W~~~~~~~~~~~~twYkt~F~l~~~~D~v~Ldl~g~gKG~~wVNG~nlGRY~~~- 670 (710)
.|.|+++|.||.++++.+++..+++|.+.+..+..+|++|||++|++|+++||+||||++||||+|||||+||||||+-
T Consensus 583 ~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~ 662 (840)
T PLN03059 583 KWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAY 662 (840)
T ss_pred ccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccccccccc
Confidence 9999999999999999987777889987654445668999999999999999999999999999999999999999964
Q ss_pred --------cccCCcccccccccCCCCCCCCCCcceeEeeccccccc
Q 005182 671 --------FQCTARQRPISFRHGCNGKGDGLDQWSEYWAPLAWIYR 708 (710)
Q Consensus 671 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~ 708 (710)
+..-..+++..|+++||+| ||+||||||+||..
T Consensus 663 a~~~gC~~c~y~g~~~~~kc~~~cggP-----~q~lYHVPr~~Lk~ 703 (840)
T PLN03059 663 TAHGSCNGCNYAGTFDDKKCRTNCGEP-----SQRWYHVPRSWLKP 703 (840)
T ss_pred cccCCCccccccccccchhhhccCCCc-----eeEEEeCcHHHhcc
Confidence 1122578899999999955 49999999999953
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-147 Score=1226.20 Aligned_cols=603 Identities=56% Similarity=0.979 Sum_probs=559.7
Q ss_pred hcccccccceeEEEecCeEEECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccch
Q 005182 28 CSWEISFVKASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRY 107 (710)
Q Consensus 28 ~~~~~~~~~~~v~~d~~~~~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~ 107 (710)
+...++.....|++|+++|.+||+|++++||+|||+|++|++|+++|+|||++|+|+|+||||||.|||+||+|||+|+.
T Consensus 9 ~~~~~~~~~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~ 88 (649)
T KOG0496|consen 9 GLLSLSGSSFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRY 88 (649)
T ss_pred hhhccccceeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchh
Confidence 44444444899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCce
Q 005182 108 DLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 187 (710)
Q Consensus 108 dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpI 187 (710)
||++||++|+++|||||||+||||||||++||+|.||...|++.+|++|++|+++|++|+++|+++++ +|+++|||||
T Consensus 89 DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPI 166 (649)
T KOG0496|consen 89 DLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPI 166 (649)
T ss_pred HHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEeccccccCCccccCCCchHHHHHHHHHHhhhcCCCcceEEecCCCCCCccccCCCCccc-cccC-CCCCCCCcccccc
Q 005182 188 ILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-EKFV-PNQNYKPKMWTEA 265 (710)
Q Consensus 188 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~~~~~~~g~~~-~~~~-~~~~~~P~~~~E~ 265 (710)
||+|||||||.+...+++.++.|++|-+.++...+.+|||+||.+.++|++++++|||.+| +.|. +++|++|+||||+
T Consensus 167 Il~QIENEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~ 246 (649)
T KOG0496|consen 167 ILVQIENEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTEN 246 (649)
T ss_pred EEEEeechhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceeccc
Confidence 9999999999887777888999999999999999999999999999999999999999999 9997 9999999999999
Q ss_pred ccccccccCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeecCCCCCCCCCCccccccCCCCCCCcCCCCCchhHHHHHH
Q 005182 266 WTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRD 345 (710)
Q Consensus 266 ~~gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDy~Apl~E~G~~~~pky~~lr~ 345 (710)
|+|||++||++++.|++++++..+++++++|+|++||||||||||||+++|.+.+|||||||||| |..++|||.|+|.
T Consensus 247 wtgwf~~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~ 324 (649)
T KOG0496|consen 247 WTGWFTHWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKP 324 (649)
T ss_pred ccchhhhhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHhhcCcccCCCCccccCCCcceeEEeecCCCceeEEEeecCCcceeEEEECCceeecCCceeEecCCCCceeeec
Q 005182 346 LHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNT 425 (710)
Q Consensus 346 l~~~i~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~Fl~N~~~~~~~~v~~~~~~~~~p~~sv~il~d~~~~l~~t 425 (710)
+|..++.+++.+..+++....+++.. +.|++|+.|++......+.|++.+|.+|+|||+|+|||++++|||
T Consensus 325 ~hts~d~~ep~lv~gd~~~~kyg~~~---------~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nt 395 (649)
T KOG0496|consen 325 LHTSYDYCEPALVAGDITTAKYGNLR---------EACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNT 395 (649)
T ss_pred chhhhhhcCccccccCcccccccchh---------hHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhc
Confidence 99999999999999987776665444 359999999998888999999999999999999999999999999
Q ss_pred cccccccceeeeeeeccccccccccccccCCCCCCccccCchhhhhCCCCCCcceEEEEEEeecCCCcccccCCCCCeEE
Q 005182 426 ARVGVQSSQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLT 505 (710)
Q Consensus 426 a~v~~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~p~~~Eqlg~t~d~tGylwYrt~~~~~~~~~~~~~g~~~~L~ 505 (710)
+++.. +|..+.||++ +|..++ ..|+++|++.++.+..+ ...|+
T Consensus 396 a~~~~--------------~~~~~~e~~~-------------~~~~~~---~~~~ll~~~~~t~d~sd-------~t~~~ 438 (649)
T KOG0496|consen 396 AKVMA--------------QWISFTEPIP-------------SEAVGQ---SFGGLLEQTNLTKDKSD-------TTSLK 438 (649)
T ss_pred ccccc--------------ccccccCCCc-------------cccccC---cceEEEEEEeeccccCC-------CceEe
Confidence 98742 2677777764 555666 78899999998866544 35788
Q ss_pred Ee-eccceEEEEECCEEEEEEEcccCCCeEEEecceecCCCccEEEEEEeecCCccccccccccccceecceEEcccCCc
Q 005182 506 IW-SAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEG 584 (710)
Q Consensus 506 l~-~~~d~~~VfVNG~~vGs~~g~~~~~~~~~~~~v~Lk~G~N~L~ILven~Gr~NyG~~~~~~~kGI~g~V~L~g~~~~ 584 (710)
|. +.+|++||||||+++|+.++......+.+..++.|++|.|+|+|||+++||+||| +++.+.|||+|+|.|.+.
T Consensus 439 i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~--- 514 (649)
T KOG0496|consen 439 IPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL--- 514 (649)
T ss_pred ecccccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee---
Confidence 88 9999999999999999999988788899999999999999999999999999999 889999999999999886
Q ss_pred cccCcCCceeeeeccccccccccccCCCCCcccccccccccCCCceEEEEEEEecCCCCeEEEEeCCcceEEEEEcCccc
Q 005182 585 TRDISKQKWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKVRIISILSQHILTIFLELIYEQSICINICHI 664 (710)
Q Consensus 585 ~~~Lt~~~W~y~~gL~gE~~~~~~p~~~~~~~W~~~~~~~~~~~~twYkt~F~l~~~~D~v~Ldl~g~gKG~~wVNG~nl 664 (710)
++++.++|.|+++|.||.+++|.+++.++++|......+.++|.+||+ +|++|++.+|++|||.|||||+|||||+||
T Consensus 515 -~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~ni 592 (649)
T KOG0496|consen 515 -IDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNI 592 (649)
T ss_pred -eccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCccc
Confidence 688888899999999999999999999999999876555558999999 999999999999999999999999999999
Q ss_pred ceeeeccccCCcccccccccCCCCCCCCCCcceeEeeccccccc
Q 005182 665 LLSADYFQCTARQRPISFRHGCNGKGDGLDQWSEYWAPLAWIYR 708 (710)
Q Consensus 665 GRY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~ 708 (710)
||||+ ++ | | |+||||||+||..
T Consensus 593 GRYW~-----------~~----G------~-Q~~yhvPr~~Lk~ 614 (649)
T KOG0496|consen 593 GRYWP-----------SF----G------P-QRTYHVPRSWLKP 614 (649)
T ss_pred ccccC-----------CC----C------C-ceEEECcHHHhCc
Confidence 99984 33 3 4 8899999999974
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.2e-88 Score=728.85 Aligned_cols=296 Identities=43% Similarity=0.784 Sum_probs=230.5
Q ss_pred eEEECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEE
Q 005182 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (710)
Q Consensus 45 ~~~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vi 124 (710)
+|+|||||++|+|||+||+|+||++|+++|+||||+|||||+|||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCC
Q 005182 125 LRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIG 204 (710)
Q Consensus 125 lr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 204 (710)
|||||||||||++||+|.||.+++++++|++||.|+++|++|+++|+++|+ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999943
Q ss_pred CchHHHHHHHHHHhhhcCCC-cceEEecCCC--------CCCccccCCCCccccc--------cCCCCCCCCcccccccc
Q 005182 205 APGKAYAKWAAQMAVGLNTG-VPWVMCKQDD--------APDPVINTCNGFYCEK--------FVPNQNYKPKMWTEAWT 267 (710)
Q Consensus 205 ~~~~~y~~~l~~~~~~~g~~-vP~~~~~~~~--------~~~~~~~~~~g~~~~~--------~~~~~~~~P~~~~E~~~ 267 (710)
.++++||+.|++++++.+++ ++.++++... .+...+.+++++.|.. ....+|++|.|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 45899999999999999998 5667776531 2232344455555521 13456889999999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeecCCCCCCCCCCcc-----ccccCCCCCCCcCCCCCchhHHH
Q 005182 268 GWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFV-----ATSYDYDAPIDEYGLLNEPKWGH 342 (710)
Q Consensus 268 gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~-----~tSYDy~Apl~E~G~~~~pky~~ 342 (710)
|||++||++++.+++++++..+++++++|.+ +||||+|||||||+++|+.. +|||||+|||+|+|++ +|||++
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999955 79999999999999999843 4999999999999999 599999
Q ss_pred HHHHHHH
Q 005182 343 LRDLHKA 349 (710)
Q Consensus 343 lr~l~~~ 349 (710)
||+||++
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999874
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-35 Score=336.76 Aligned_cols=287 Identities=23% Similarity=0.334 Sum_probs=211.9
Q ss_pred EEEecCeEEECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEE-eeeCCCCCCCCcceecccchhHHHHHHHHH
Q 005182 39 VSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (710)
Q Consensus 39 v~~d~~~~~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~~G~fdf~g~~dl~~fi~la~ 117 (710)
|.+++..+++||+|++++||++||+|+|++.|.++|++||++|+|+|++ |++||.|||++|+|||+ .+|++ ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567899999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCCEEEeecCc-cccceecCCCCCeecccCCCeE---------EecCChhHHHHHHHHHHHHHHHHHhccccccCCCce
Q 005182 118 QAGLYVHLRIGP-YVCAEWNYGGFPVWLKYVPGIE---------FRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 187 (710)
Q Consensus 118 ~~GL~Vilr~GP-yi~aEw~~GG~P~WL~~~p~~~---------~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpI 187 (710)
+.||+||||||| ..|.+|..+++|+||..++.-. +..+++.|++++++ |+++|++ ..+++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~ire--r~~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR----ILQQIRE--RLYGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHH----HHHHHHH--HHhccCCce
Confidence 999999999999 9999999999999998765422 23456778888877 4555553 225799999
Q ss_pred EEeccccccCCccccCCCchHHHHHHHHHHhhhc-CCCcceEEecCC-CCCC-ccccCCC--------CccccccCCCCC
Q 005182 188 ILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL-NTGVPWVMCKQD-DAPD-PVINTCN--------GFYCEKFVPNQN 256 (710)
Q Consensus 188 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vP~~~~~~~-~~~~-~~~~~~~--------g~~~~~~~~~~~ 256 (710)
|+||++||||++.+.+..|.+.+..||++.+-.+ ..+-+|-+.--. +..+ ..|.+.+ +.+ -++.....
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~-ld~~~f~~ 231 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLY-LDYRRFES 231 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccch-hhHhhhhh
Confidence 9999999999865445568899999999987422 122333211100 0000 0011111 110 01222222
Q ss_pred CC----Cccccccccccc-cccCCCCCCCC-hHHHHHHHHHHHHcCCeeeeeeeeecCCCCC------CCCCC-------
Q 005182 257 YK----PKMWTEAWTGWF-TEFGSAVPTRP-AEDLVFSVARFIQSGGSFINYYMYHGGTNFG------RTSGG------- 317 (710)
Q Consensus 257 ~~----P~~~~E~~~gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~g~------- 317 (710)
.+ +....|.+-+|| +.|..+.-... .+.-++.++..|..+.. -||||+|+|++|+ +.+++
T Consensus 232 e~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~ 310 (673)
T COG1874 232 EQILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWL 310 (673)
T ss_pred hhhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceee
Confidence 22 556677788888 66665443333 33335556667766655 6999999999999 55544
Q ss_pred ----ccccccCCCCCCCcCCCC
Q 005182 318 ----FVATSYDYDAPIDEYGLL 335 (710)
Q Consensus 318 ----~~~tSYDy~Apl~E~G~~ 335 (710)
...|+|++.+.+.+.|..
T Consensus 311 me~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 311 MEQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred ccCCcchhhhhhccCCCCCccc
Confidence 268999999999999985
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.86 E-value=3e-21 Score=212.33 Aligned_cols=263 Identities=21% Similarity=0.290 Sum_probs=159.6
Q ss_pred eeCCCCCccchHHHHHHHHHcCCCEEEE-eeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCC
Q 005182 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG 138 (710)
Q Consensus 60 ~Hy~r~~~~~W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~G 138 (710)
+++..++++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .||++|++|+++||+|||++. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4567789999999999999999999997 57799999999999999 899999999999999999985 46
Q ss_pred CCCeeccc-CCCeEE----------------ecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccc
Q 005182 139 GFPVWLKY-VPGIEF----------------RTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW 201 (710)
Q Consensus 139 G~P~WL~~-~p~~~~----------------R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~ 201 (710)
..|.||.+ .|++.. ..++|.|++++++++++|+++++ +++.||+|||+||++.. .
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~-------~~p~vi~~~i~NE~~~~-~ 142 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYG-------DHPAVIGWQIDNEPGYH-R 142 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHT-------TTTTEEEEEECCSTTCT-S
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcc-------ccceEEEEEeccccCcC-c
Confidence 78999976 565421 24578899999999999988877 44589999999999874 2
Q ss_pred cCCC-chHHHHHHHHHHhhhc-------CC-------------CcceEEecCC------C--------------------
Q 005182 202 DIGA-PGKAYAKWAAQMAVGL-------NT-------------GVPWVMCKQD------D-------------------- 234 (710)
Q Consensus 202 ~~~~-~~~~y~~~l~~~~~~~-------g~-------------~vP~~~~~~~------~-------------------- 234 (710)
+|++ +.++|.+||++++... |. ..|..+.... |
T Consensus 143 ~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~i 222 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADII 222 (374)
T ss_dssp --SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 6678999999988532 11 1222211000 0
Q ss_pred ---CCC-ccc----cC-CCC----------------cccc--------c---------c-CCCCCCCCcccccccccccc
Q 005182 235 ---APD-PVI----NT-CNG----------------FYCE--------K---------F-VPNQNYKPKMWTEAWTGWFT 271 (710)
Q Consensus 235 ---~~~-~~~----~~-~~g----------------~~~~--------~---------~-~~~~~~~P~~~~E~~~gwf~ 271 (710)
.|. ++. .. ..+ .|.. . + ....+++|.+++|.++| -.
T Consensus 223 r~~~p~~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 223 REYDPDHPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHHSTT-EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HHhCCCceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 010 000 00 000 0100 0 0 01247889999999998 56
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCCeeeeeeeeecCCCCCCCCCCccccccCCCCCCCcCC-CCCchhHHHHHHHHHHH
Q 005182 272 EFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYG-LLNEPKWGHLRDLHKAI 350 (710)
Q Consensus 272 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDy~Apl~E~G-~~~~pky~~lr~l~~~i 350 (710)
.|+.......+..+....-.-++.|+..+.|+-+ ....+|.=.. ..+.|+-+| .+ +++|.+++++...|
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~--------~~g~~~~dg~~~-~~~~~e~~~~~~~l 371 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF--------HGGLVDHDGREP-TRRYREVAQLGREL 371 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT--------S--SB-TTS--B--HHHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh--------hcccCCccCCCC-CcHHHHHHHHHHHH
Confidence 6766555556666666566678999998888755 2223332110 246788899 66 68999999998877
Q ss_pred Hh
Q 005182 351 KL 352 (710)
Q Consensus 351 ~~ 352 (710)
+.
T Consensus 372 ~~ 373 (374)
T PF02449_consen 372 KK 373 (374)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.54 E-value=2e-13 Score=145.87 Aligned_cols=192 Identities=20% Similarity=0.268 Sum_probs=125.4
Q ss_pred EEEecCeEEECCEEeEEEEEEeeCCC------CCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHH
Q 005182 39 VSYDHKAVIINGQKRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRF 112 (710)
Q Consensus 39 v~~d~~~~~idGkp~~i~sG~~Hy~r------~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~f 112 (710)
|.+.++.|+|||||++|.|...|... .+++.++++|++||++|+|+||+ .|-|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHH
Confidence 67899999999999999999999632 47889999999999999999999 566644 499
Q ss_pred HHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 005182 113 IKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (710)
Q Consensus 113 i~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Qi 192 (710)
+++|+++||.|+..+.=.-++.|..-|.. .....||.+.+.+.+-+++++.+.+ |+++||||-+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~-------NHPSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGNC---------NYDADDPEFRENAEQELREMVRRDR-------NHPSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSCT---------SCTTTSGGHHHHHHHHHHHHHHHHT-------T-TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCcc---------ccCCCCHHHHHHHHHHHHHHHHcCc-------CcCchheeec
Confidence 99999999999988721122333322211 1345678888877776666655555 7789999999
Q ss_pred ccccCCccccCCCchHHHHHHHHHHhhhcCCCcceEEecCC-C-CCCc-cccCCCCccc-----cccC----C--CCCCC
Q 005182 193 ENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQD-D-APDP-VINTCNGFYC-----EKFV----P--NQNYK 258 (710)
Q Consensus 193 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~-~-~~~~-~~~~~~g~~~-----~~~~----~--~~~~~ 258 (710)
-||-. ...+++.|.+++++.+.+.|+...... . ..+. ..+...+.|. +.+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99993 467889999999999999988655442 1 1111 1111111111 1111 1 35789
Q ss_pred Ccccccccccccc
Q 005182 259 PKMWTEAWTGWFT 271 (710)
Q Consensus 259 P~~~~E~~~gwf~ 271 (710)
|++.+||....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999655444
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.44 E-value=1.4e-11 Score=144.03 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=113.4
Q ss_pred eeEEEecCeEEECCEEeEEEEEEeeCCC------CCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHH
Q 005182 37 ASVSYDHKAVIINGQKRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (710)
Q Consensus 37 ~~v~~d~~~~~idGkp~~i~sG~~Hy~r------~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~ 110 (710)
++|++++..|+|||+|+++.|...|... ++++.|+++|+.||++|+|+||+ .|-|.+ .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~~-----------~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPYS-----------E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCCC-----------H
Confidence 6688999999999999999999998532 46788999999999999999999 455544 4
Q ss_pred HHHHHHHHcCCEEEeecCccccceecCCCCCeecc-------c-CCCeEEecCChhHHHHHHHHHHHHHHHHHhcccccc
Q 005182 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK-------Y-VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQT 182 (710)
Q Consensus 111 ~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~-------~-~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~ 182 (710)
+|+++|.|+||+|+.... . + |+..|.. + .+.......+|.+.++.. +.+.++|++ ..
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~mv~r----~~ 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-V------GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHL---QAIRELIAR----DK 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-c------cccccccccccccccccccccccccchhHHHHHH---HHHHHHHHh----cc
Confidence 899999999999998863 1 1 1111211 0 111111123455544443 334455553 35
Q ss_pred CCCceEEeccccccCCccccCCCchHHHHHHHHHHhhhcCCCcceEEec
Q 005182 183 QGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCK 231 (710)
Q Consensus 183 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 231 (710)
|+++||||.|.||.... ......+++.|.+.+++++.+.|+..+.
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~ 449 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVN 449 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 88999999999997532 1234578888999999999999886543
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.32 E-value=2.2e-11 Score=149.34 Aligned_cols=186 Identities=22% Similarity=0.239 Sum_probs=124.4
Q ss_pred eeEEEecCeEEECCEEeEEEEEEeeCCC------CCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHH
Q 005182 37 ASVSYDHKAVIINGQKRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (710)
Q Consensus 37 ~~v~~d~~~~~idGkp~~i~sG~~Hy~r------~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~ 110 (710)
++|+++++.|+|||+|+++.|...|... ++++.++++|+.||++|+|+||+ .|-|.. .
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~~-----------~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPND-----------P 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------H
Confidence 5578888999999999999999988421 47889999999999999999999 354433 3
Q ss_pred HHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 005182 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (710)
Q Consensus 111 ~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~ 190 (710)
+|+++|.|+||+|+... |..|..|..-+ +...-+++|.+.++ +.+++.+++++ .+|+++||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~---~~~~~~~mV~R----drNHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKV---YVDRIVRHIHA----QKNHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHH---HHHHHHHHHHh----CCCCCEEEEE
Confidence 99999999999999986 33332221101 00112356666543 34445556663 3588999999
Q ss_pred ccccccCCccccCCCchHHHHHHHHHHhhhcCCCcceEEecCCCCCCccccCCCCccc-----cccCCCCCCCCcccccc
Q 005182 191 QIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-----EKFVPNQNYKPKMWTEA 265 (710)
Q Consensus 191 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~P~~~~E~ 265 (710)
-+.||-+. + . .++.+.+.+++++.+.|+........ .+.+...-.|. +.+....+++|++.+|+
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~~~~~~~~--~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey 513 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLVHYEEDRDA--EVVDVISTMYTRVELMNEFGEYPHPKPRILCEY 513 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceEEeCCCcCc--cccceeccccCCHHHHHHHHhCCCCCcEEEEch
Confidence 99999763 2 2 23677888889998888743222111 11222221222 23334446799999998
Q ss_pred c
Q 005182 266 W 266 (710)
Q Consensus 266 ~ 266 (710)
-
T Consensus 514 ~ 514 (1021)
T PRK10340 514 A 514 (1021)
T ss_pred H
Confidence 3
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.27 E-value=7.2e-11 Score=144.70 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=109.9
Q ss_pred eeEEEecCeEEECCEEeEEEEEEeeCC------CCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHH
Q 005182 37 ASVSYDHKAVIINGQKRILISGSIHYP------RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (710)
Q Consensus 37 ~~v~~d~~~~~idGkp~~i~sG~~Hy~------r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~ 110 (710)
++|++++..|+|||+|++|.|...|.. +++++.++++|+.||++|+|+||+ .++.+.|
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------ 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------ 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 457788889999999999999999842 358889999999999999999999 3444444
Q ss_pred HHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 005182 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (710)
Q Consensus 111 ~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~ 190 (710)
+|+++|.|+||+|+-...=..|+-+ |. .. -.+||.|.+++ .+++.++|++ .+|+++||||
T Consensus 398 ~fydlcDe~GilV~dE~~~e~hg~~-----~~---~~-----~~~dp~~~~~~---~~~~~~mV~R----drNHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEANIETHGMV-----PM---NR-----LSDDPRWLPAM---SERVTRMVQR----DRNHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecCccccCCc-----cc---cC-----CCCCHHHHHHH---HHHHHHHHHh----CCCCCEEEEE
Confidence 8999999999999998631122211 11 00 13567775544 4556666663 3588999999
Q ss_pred ccccccCCccccCCCchHHHHHHHHHHhhhcCCCcceEEec
Q 005182 191 QIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCK 231 (710)
Q Consensus 191 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 231 (710)
-+.||-+. +. ..+.+.+.+++++.+.|+....
T Consensus 458 SlgNE~~~-----g~----~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 458 SLGNESGH-----GA----NHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred eCccCCCc-----Ch----hHHHHHHHHHhhCCCCcEEECC
Confidence 99999763 22 2456777788888889886553
No 10
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=2.1e-09 Score=127.85 Aligned_cols=120 Identities=19% Similarity=0.281 Sum_probs=95.5
Q ss_pred eeEEEecCeEEECCEEeEEEEEEeeCCC-----C-CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHH
Q 005182 37 ASVSYDHKAVIINGQKRILISGSIHYPR-----S-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (710)
Q Consensus 37 ~~v~~d~~~~~idGkp~~i~sG~~Hy~r-----~-~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~ 110 (710)
++|++++..|.|||||+++-|..-|.+- . ..+.-+++|++||++|+|+||| . |-|+. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt----s-HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT----S-HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe----c-CCCCC-----------H
Confidence 5689999999999999999999999633 3 3444899999999999999999 2 77766 5
Q ss_pred HHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEe
Q 005182 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (710)
Q Consensus 111 ~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~ 190 (710)
+|++||.++||+||-.+ ..+|.. +| +|+.|++.+..=+++++++. +|+++||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~-------knHPSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERD-------RNHPSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhc-------cCCCcEEEE
Confidence 99999999999999997 444432 22 67778777765444444444 477899999
Q ss_pred ccccccCC
Q 005182 191 QIENEFGP 198 (710)
Q Consensus 191 QiENEyg~ 198 (710)
-+.||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999874
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.98 E-value=9.5e-09 Score=107.38 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=109.4
Q ss_pred CCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCC-CCCcc-eecccchhHHHHHHHHHHcCCEEEee
Q 005182 49 NGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-PTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 49 dGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hE-p~~G~-fdf~g~~dl~~fi~la~~~GL~Vilr 126 (710)
+|+++.+.+-+.|... +..-++.+++||++|+|+||+.|.|...+ |.|+. ++=+....|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6999999999999322 12778999999999999999999995444 77764 77677789999999999999999998
Q ss_pred cCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCcccc--CC
Q 005182 127 IGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWD--IG 204 (710)
Q Consensus 127 ~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~--~~ 204 (710)
+ ++. |.|....... ...+...+...++++.|+++++ +..+|++++|=||....... ..
T Consensus 82 ~----h~~------~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 L----HNA------PGWANGGDGY---GNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp E----EES------TTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTTS
T ss_pred e----ccC------cccccccccc---ccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCccccc
Confidence 6 222 6664322110 1222334444555555665554 34579999999999764211 00
Q ss_pred ----CchHHHHHHHHHHhhhcCCCcceEEec
Q 005182 205 ----APGKAYAKWAAQMAVGLNTGVPWVMCK 231 (710)
Q Consensus 205 ----~~~~~y~~~l~~~~~~~g~~vP~~~~~ 231 (710)
..-.++.+.+.+..|+.+.+.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 011345555666778888887765433
No 12
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.86 E-value=1.2e-08 Score=99.36 Aligned_cols=99 Identities=24% Similarity=0.369 Sum_probs=75.1
Q ss_pred CCCcceEEEEEEeecCCCcccccCCCCCeEEEeeccceEEEEECCEEEEEEEcccCCCeEEEecceecCCCc-cEEEEEE
Q 005182 475 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGV-NKISLLS 553 (710)
Q Consensus 475 ~d~tGylwYrt~~~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGs~~g~~~~~~~~~~~~v~Lk~G~-N~L~ILv 553 (710)
....|..|||++|+++++. +++...|.++++++.+.|||||++||++.+...+..+.++ -.|+.|. |+|+|+|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~~~~~dIt--~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYTPFEFDIT--DYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTTS-EEEECG--GGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCcCCeEEeCh--hhccCCCCEEEEEEE
Confidence 4589999999999998765 5677899999999999999999999999887655555554 3589997 9999999
Q ss_pred eecCCcccccccc-ccccceecceEEc
Q 005182 554 TSVGLPNVGTHFE-KWNAGVLGPVTLK 579 (710)
Q Consensus 554 en~Gr~NyG~~~~-~~~kGI~g~V~L~ 579 (710)
.+.....+-+.+. ....||.++|.|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 9765332211111 3567999998884
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.85 E-value=1.5e-08 Score=93.30 Aligned_cols=77 Identities=21% Similarity=0.374 Sum_probs=56.9
Q ss_pred CCCcceEEEEEEeecCCCcccccCCCCCe-EEEe-eccceEEEEECCEEEEEEE-cccCCCeEEEecceecCCCccEEEE
Q 005182 475 ADASDYLWYMTDVNIDSNEGFLKNGQDPL-LTIW-SAGHALQVFINGQLSGTVY-GSLENPKLTFSKNVKLRPGVNKISL 551 (710)
Q Consensus 475 ~d~tGylwYrt~~~~~~~~~~~~~g~~~~-L~l~-~~~d~~~VfVNG~~vGs~~-g~~~~~~~~~~~~v~Lk~G~N~L~I 551 (710)
+++.|++|||++|+.+..+. ... |.+. +.+++++|||||+++|+.. ......+|.+|.++ |+.+.|+|+|
T Consensus 31 g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~i-l~~~n~v~~v 103 (111)
T PF13364_consen 31 GFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGI-LKYGNNVLVV 103 (111)
T ss_dssp TSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTT-BTTCEEEEEE
T ss_pred ccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCcee-ecCCCEEEEE
Confidence 44999999999997544331 123 3343 4699999999999999988 33445678888764 7778889999
Q ss_pred EEeecCC
Q 005182 552 LSTSVGL 558 (710)
Q Consensus 552 Lven~Gr 558 (710)
|+.+||+
T Consensus 104 l~~~~g~ 110 (111)
T PF13364_consen 104 LWDNMGH 110 (111)
T ss_dssp EEE-STT
T ss_pred EEeCCCC
Confidence 9999994
No 14
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.27 E-value=1e-05 Score=86.22 Aligned_cols=157 Identities=13% Similarity=0.143 Sum_probs=88.2
Q ss_pred cccceeEEEecCeEE--ECCEEeEEEEEEeeCCC-----------CCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCc
Q 005182 33 SFVKASVSYDHKAVI--INGQKRILISGSIHYPR-----------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG 99 (710)
Q Consensus 33 ~~~~~~v~~d~~~~~--idGkp~~i~sG~~Hy~r-----------~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G 99 (710)
+..-..|++.++.|+ -+|++|+|.|-.+.+.- ..++.|++++..||++|+||||+| ...|..
T Consensus 5 ~~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY----~vdp~~- 79 (314)
T PF03198_consen 5 AAAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVY----SVDPSK- 79 (314)
T ss_dssp STTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TTS-
T ss_pred hccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEE----EeCCCC-
Confidence 344556888898898 78999999998877522 356789999999999999999997 345555
Q ss_pred ceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCCh--hHHHHHHHHHHHHHHHHHhc
Q 005182 100 NYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNG--PFKAAMHKFTEKIVSMMKAE 177 (710)
Q Consensus 100 ~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~--~y~~~~~~~~~~l~~~i~~~ 177 (710)
|=++++++.+++|||||+..+. | ...+-..+| .|-...-.-+.++++.++++
T Consensus 80 --------nHd~CM~~~~~aGIYvi~Dl~~-----------p-------~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y 133 (314)
T PF03198_consen 80 --------NHDECMSAFADAGIYVILDLNT-----------P-------NGSINRSDPAPSWNTDLLDRYFAVIDAFAKY 133 (314)
T ss_dssp ----------HHHHHHHHHTT-EEEEES-B-----------T-------TBS--TTS------HHHHHHHHHHHHHHTT-
T ss_pred --------CHHHHHHHHHhCCCEEEEecCC-----------C-------CccccCCCCcCCCCHHHHHHHHHHHHHhccC
Confidence 6789999999999999999743 2 222333445 44333333344566777743
Q ss_pred cccccCCCceEEeccccccCCccccC--CCchHHHHHHHHHHhhhcCC-Ccce
Q 005182 178 KLFQTQGGPIILSQIENEFGPVEWDI--GAPGKAYAKWAAQMAVGLNT-GVPW 227 (710)
Q Consensus 178 ~~~~~~gGpII~~QiENEyg~~~~~~--~~~~~~y~~~l~~~~~~~g~-~vP~ 227 (710)
.+++++-+.||.-...... .+.-|+..+-+|+-.++.+. .+|+
T Consensus 134 -------~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 -------DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp -------TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred -------CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 3899999999986432100 11234444555555556665 4676
No 15
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.25 E-value=3.9e-06 Score=98.58 Aligned_cols=114 Identities=20% Similarity=0.233 Sum_probs=80.5
Q ss_pred cccCchhhhhCC---CCCCcceEEEEEEeecCCCcccccCCCCCeEEEeeccceEEEEECCEEEEEEEcccCCCeEEEec
Q 005182 462 FTKDGLWEQVYL---TADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSK 538 (710)
Q Consensus 462 ~~~p~~~Eqlg~---t~d~tGylwYrt~~~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGs~~g~~~~~~~~~~~ 538 (710)
+.+|+.+++.+. .++..|..|||++|++++.. +++...|.+.++...+.|||||++||.+.+...+..|.++.
T Consensus 45 i~vP~~~~~~~~~~~~~~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~~f~~DIT~ 120 (604)
T PRK10150 45 MAVPGSFNDQFADADIRNYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYTPFEADITP 120 (604)
T ss_pred ecCCCchhhccccccccCCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCccceEEeCch
Confidence 344555554321 24578999999999998654 57789999999999999999999999998876555555443
Q ss_pred ceecCCCcc-EEEEEEeecCCcc---ccccc-------------c-ccccceecceEEccc
Q 005182 539 NVKLRPGVN-KISLLSTSVGLPN---VGTHF-------------E-KWNAGVLGPVTLKGL 581 (710)
Q Consensus 539 ~v~Lk~G~N-~L~ILven~Gr~N---yG~~~-------------~-~~~kGI~g~V~L~g~ 581 (710)
.|+.|.| +|+|+|.|.-... .|... + ....||.++|.|...
T Consensus 121 --~l~~G~~n~L~V~v~n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 121 --YVYAGKSVRITVCVNNELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred --hccCCCceEEEEEEecCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 5788864 9999998742110 01100 0 246799999998654
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.05 E-value=1.1e-05 Score=84.64 Aligned_cols=117 Identities=19% Similarity=0.306 Sum_probs=87.5
Q ss_pred CCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHH
Q 005182 91 WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKI 170 (710)
Q Consensus 91 Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l 170 (710)
|...||+||+|||+ .++++++.|+++||.| |..+- -|-. ..|.|+...+ .+..++++++|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l---~W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTL---VWHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEE---eecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 33222 2433 6899997532 345677788888888
Q ss_pred HHHHHhccccccCCCceEEeccccccCCccc------cC-CCchHHHHHHHHHHhhhcCCCcceEEecC
Q 005182 171 VSMMKAEKLFQTQGGPIILSQIENEFGPVEW------DI-GAPGKAYAKWAAQMAVGLNTGVPWVMCKQ 232 (710)
Q Consensus 171 ~~~i~~~~~~~~~gGpII~~QiENEyg~~~~------~~-~~~~~~y~~~l~~~~~~~g~~vP~~~~~~ 232 (710)
+.+++ |.|..|+|=||.-+... .+ ...+.+|+...-+.+++.+.++.++.++.
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 77776 46899999999643210 01 11345788888889999999999988753
No 17
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.03 E-value=1.7e-05 Score=98.08 Aligned_cols=95 Identities=21% Similarity=0.309 Sum_probs=73.8
Q ss_pred cceEEEEEEeecCCCcccccCCCCCeEEEeeccceEEEEECCEEEEEEEcccCCCeEEEecceecCCCccEEEEEEeecC
Q 005182 478 SDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVG 557 (710)
Q Consensus 478 tGylwYrt~~~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGs~~g~~~~~~~~~~~~v~Lk~G~N~L~ILven~G 557 (710)
.+..|||++|+++++. +++...|++.++...+.|||||++||.+.+...+..|.++. .|+.|+|+|+|.|.+..
T Consensus 108 n~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~pfefDIT~--~l~~G~N~LaV~V~~~~ 181 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISA--MVKTGDNLLCVRVMQWA 181 (1021)
T ss_pred CCeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCCccEEEEcch--hhCCCccEEEEEEEecC
Confidence 4678999999998764 57789999999999999999999999988776655565554 57889999999998543
Q ss_pred Cccccccccc----cccceecceEEccc
Q 005182 558 LPNVGTHFEK----WNAGVLGPVTLKGL 581 (710)
Q Consensus 558 r~NyG~~~~~----~~kGI~g~V~L~g~ 581 (710)
. |.+++. ...||.++|.|...
T Consensus 182 d---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 182 D---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred C---CCccccCCccccccccceEEEEEe
Confidence 2 222221 24699999888654
No 18
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.00 E-value=2.4e-05 Score=96.81 Aligned_cols=95 Identities=18% Similarity=0.201 Sum_probs=70.6
Q ss_pred cceEEEEEEeecCCCcccccCCC-CCeEEEeeccceEEEEECCEEEEEEEcccCCCeEEEecceecCCCccEEEEEEeec
Q 005182 478 SDYLWYMTDVNIDSNEGFLKNGQ-DPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSV 556 (710)
Q Consensus 478 tGylwYrt~~~~~~~~~~~~~g~-~~~L~l~~~~d~~~VfVNG~~vGs~~g~~~~~~~~~~~~v~Lk~G~N~L~ILven~ 556 (710)
.+..|||++|+++++. .++ +..|+++++...+.|||||++||.+.+...+..|.++ -.|+.|+|+|+|+|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~~pfefDIT--~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSRLPAEFDLS--PFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCCceEEEECh--hhhcCCccEEEEEEEec
Confidence 5778999999998653 233 6899999999999999999999998876655444444 35888999999999542
Q ss_pred CCcccccccc----ccccceecceEEccc
Q 005182 557 GLPNVGTHFE----KWNAGVLGPVTLKGL 581 (710)
Q Consensus 557 Gr~NyG~~~~----~~~kGI~g~V~L~g~ 581 (710)
.. |.+++ ....||.++|.|...
T Consensus 193 sd---gs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 SD---GSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred CC---CCccccCCceeeccccceEEEEEc
Confidence 21 22222 134699999888654
No 19
>TIGR03356 BGL beta-galactosidase.
Probab=97.91 E-value=2.4e-05 Score=88.17 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=81.9
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCC-CcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeeccc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (710)
..|+++|++||++|+|++|+-|.|...+|. +|++|.+|....+++|+.|.++||.+|+-.=. | .+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H-----f---d~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH-----W---DLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc-----C---CccHHHHh
Confidence 458999999999999999999999999999 78999999999999999999999998877522 2 48999986
Q ss_pred CCCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 147 ~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
..+- .++...++..+|.+.++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhC
Confidence 5443 457777888888888888777
No 20
>PLN02705 beta-amylase
Probab=97.68 E-value=9.7e-05 Score=84.04 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=64.2
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCC-CCcceecccchhHHHHHHHHHHcCCEE--EeecCccccceecCC----
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG---- 138 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~fdf~g~~dl~~fi~la~~~GL~V--ilr~GPyi~aEw~~G---- 138 (710)
.++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| ..+++++|+++||++ ||.+ --||. +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 3456788999999999999999999999998 799999995 567799999999996 5555 45665 222
Q ss_pred -CCCeeccc----CCCeE
Q 005182 139 -GFPVWLKY----VPGIE 151 (710)
Q Consensus 139 -G~P~WL~~----~p~~~ 151 (710)
-||.|+.+ +|++.
T Consensus 340 IPLP~WV~e~g~~nPDif 357 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIF 357 (681)
T ss_pred ccCCHHHHHhcccCCCce
Confidence 28999975 46663
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.66 E-value=0.00032 Score=79.40 Aligned_cols=80 Identities=23% Similarity=0.454 Sum_probs=64.5
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCC-CCcceecccchhHHHHHHHHHHcCCEE--EeecCccccceecCC----
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG---- 138 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~fdf~g~~dl~~fi~la~~~GL~V--ilr~GPyi~aEw~~G---- 138 (710)
.++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| ..+++++|+++||++ |+.+ .-||- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566889999999999999999999999998 899999995 567799999999996 5554 45655 222
Q ss_pred -CCCeeccc----CCCeE
Q 005182 139 -GFPVWLKY----VPGIE 151 (710)
Q Consensus 139 -G~P~WL~~----~p~~~ 151 (710)
-||.|+.+ +|++.
T Consensus 199 IpLP~WV~~~g~~dpDif 216 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLA 216 (573)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999975 46663
No 22
>PLN02905 beta-amylase
Probab=97.64 E-value=0.00014 Score=83.13 Aligned_cols=79 Identities=20% Similarity=0.405 Sum_probs=63.3
Q ss_pred ccchHHHHHHHHHcCCCEEEEeeeCCCCCC-CCcceecccchhHHHHHHHHHHcCCEE--EeecCccccceecCC-----
Q 005182 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG----- 138 (710)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~fdf~g~~dl~~fi~la~~~GL~V--ilr~GPyi~aEw~~G----- 138 (710)
++.-+..|+++|++|+..|.+-|.|...|. .|++|||+| ..+++++|+++||++ |+.+ .-||- +-|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~I 358 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCI 358 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 445688999999999999999999999998 899999995 567799999999996 5554 55655 222
Q ss_pred CCCeeccc----CCCeE
Q 005182 139 GFPVWLKY----VPGIE 151 (710)
Q Consensus 139 G~P~WL~~----~p~~~ 151 (710)
-||.|+.+ +|++.
T Consensus 359 PLP~WV~e~g~~nPDif 375 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIF 375 (702)
T ss_pred cCCHHHHHhhhcCCCce
Confidence 38999975 46663
No 23
>PLN02801 beta-amylase
Probab=97.61 E-value=0.00016 Score=81.19 Aligned_cols=80 Identities=25% Similarity=0.462 Sum_probs=64.2
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCC-CCcceecccchhHHHHHHHHHHcCCEE--EeecCccccceecCC----
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG---- 138 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~fdf~g~~dl~~fi~la~~~GL~V--ilr~GPyi~aEw~~G---- 138 (710)
.++.-+..|+++|++|+..|.+-|.|...|. .|++|||+| -.+++++|+++||++ |+.+ .-||- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4666899999999999999999999999997 699999995 567799999999996 5554 45554 212
Q ss_pred -CCCeeccc----CCCeE
Q 005182 139 -GFPVWLKY----VPGIE 151 (710)
Q Consensus 139 -G~P~WL~~----~p~~~ 151 (710)
-+|.|+.+ +|++.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999975 46663
No 24
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.61 E-value=0.00024 Score=76.18 Aligned_cols=225 Identities=20% Similarity=0.282 Sum_probs=110.6
Q ss_pred cCeEE-ECCEEeEEEEEEeeC---CCCCccchHHHHHHHHHcCCCEEEEeee--CCCC-C-------C----CCcceecc
Q 005182 43 HKAVI-INGQKRILISGSIHY---PRSTPEMWPDLIQKAKDGGLDVIQTYVF--WNGH-E-------P----TQGNYYFQ 104 (710)
Q Consensus 43 ~~~~~-idGkp~~i~sG~~Hy---~r~~~~~W~~~l~k~Ka~G~N~V~tyv~--Wn~h-E-------p----~~G~fdf~ 104 (710)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+-|||+|++=++ |..+ . | .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 7999999998 4444 4578899999999999999999999766 4422 1 1 11236776
Q ss_pred cc-----hhHHHHHHHHHHcCCEEEeec---CccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHh
Q 005182 105 DR-----YDLVRFIKLVQQAGLYVHLRI---GPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (710)
Q Consensus 105 g~-----~dl~~fi~la~~~GL~Vilr~---GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~ 176 (710)
.- ..|++.|+.|.+.||.+-|-| +||.-+-|-.| | ..| =.+..++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 53 589999999999999974432 34544555443 1 111 146788999999999995
Q ss_pred ccccccCCCceEEeccccccCCccccCCCchHHHHHHHHHHhhhcCCCcce-EEecCC-CCC-----CccccC---CCCc
Q 005182 177 EKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPW-VMCKQD-DAP-----DPVINT---CNGF 246 (710)
Q Consensus 177 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~-~~~~~~-~~~-----~~~~~~---~~g~ 246 (710)
.+ +|| |-|-||+ . ......++.+.+.+..++.+..-+. ++..+. ..+ .+-++. ..|-
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 43 455 7799999 1 1234567777777777776654433 332221 111 111111 1111
Q ss_pred --cc-c-------ccC-CCCCCCCcccccc-ccccccccCCCCCCCChHHHHHHHHHHHHcCC
Q 005182 247 --YC-E-------KFV-PNQNYKPKMWTEA-WTGWFTEFGSAVPTRPAEDLVFSVARFIQSGG 297 (710)
Q Consensus 247 --~~-~-------~~~-~~~~~~P~~~~E~-~~gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 297 (710)
+. + ... ...|.+|++..|- |.|--..+.+.....+++++...+=+-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11 1 111 4568899999985 33433322222334567777654333344555
No 25
>PLN02803 beta-amylase
Probab=97.57 E-value=0.0002 Score=80.86 Aligned_cols=83 Identities=18% Similarity=0.441 Sum_probs=63.8
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCC-CCcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCC-----C
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----G 139 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~G-----G 139 (710)
.++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| ..+++++|+++||++..-..=.-||- +-| -
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 180 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIP 180 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 3455688999999999999999999999998 599999995 56779999999999643332245554 222 2
Q ss_pred CCeeccc----CCCeEE
Q 005182 140 FPVWLKY----VPGIEF 152 (710)
Q Consensus 140 ~P~WL~~----~p~~~~ 152 (710)
||.|+.+ +|++.+
T Consensus 181 LP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVY 197 (548)
T ss_pred CCHHHHHhhhcCCCceE
Confidence 8999975 466643
No 26
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=97.56 E-value=7.8e-05 Score=68.70 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=33.1
Q ss_pred CCceEEEEEEEecCCCC-eEE-EEeC--CcceEEEEEcCcccceeeeccccCCc
Q 005182 627 QPMTWYKVRIISILSQH-ILT-IFLE--LIYEQSICINICHILLSADYFQCTAR 676 (710)
Q Consensus 627 ~~~twYkt~F~l~~~~D-~v~-Ldl~--g~gKG~~wVNG~nlGRY~~~~~~~~~ 676 (710)
.+..|||++|.. .+.| .+. |... ...+++|||||++||||++ ..+||
T Consensus 34 ~g~~~Yrg~F~~-~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~--~~g~q 84 (111)
T PF13364_consen 34 AGYLWYRGTFTG-TGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWP--GIGPQ 84 (111)
T ss_dssp SCEEEEEEEEET-TTEEEEEE-EEECSSTTEEEEEEETTEEEEEEET--TTECC
T ss_pred CCCEEEEEEEeC-CCcceeEEEEeccCCCceEEEEEECCEEeeeecC--CCCcc
Confidence 478999999953 2233 344 4444 4679999999999999773 35566
No 27
>PLN02161 beta-amylase
Probab=97.54 E-value=0.00036 Score=78.40 Aligned_cols=83 Identities=18% Similarity=0.346 Sum_probs=64.0
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCC-CCcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCC-----C
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----G 139 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp-~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~G-----G 139 (710)
.++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| ..+++++++++||++..-..=.-||- +-| -
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~Ip 190 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGIS 190 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCcc
Confidence 3455688999999999999999999999998 899999995 56779999999999643333345544 222 2
Q ss_pred CCeeccc----CCCeEE
Q 005182 140 FPVWLKY----VPGIEF 152 (710)
Q Consensus 140 ~P~WL~~----~p~~~~ 152 (710)
||.|+.+ +|++.+
T Consensus 191 LP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 191 LPLWIREIGDVNKDIYY 207 (531)
T ss_pred CCHHHHhhhccCCCceE
Confidence 7999975 466643
No 28
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.29 E-value=0.00033 Score=77.38 Aligned_cols=115 Identities=16% Similarity=0.253 Sum_probs=71.9
Q ss_pred chHHHHHHHHHcCCCEEEEeeeCCCCCCC-CcceecccchhHHHHHHHHHHcCCEEEeecCccccce----ecCCCCCee
Q 005182 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE----WNYGGFPVW 143 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aE----w~~GG~P~W 143 (710)
.-+..|+++|++|+..|.+.|.|...|.. |++|||+ --++++++|+++||++..-..=.-|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs---~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS---GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H---HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 45788999999999999999999999997 9999999 467789999999999754332244532 111247999
Q ss_pred ccc---CCCeEEecC---------ChhH----HHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 005182 144 LKY---VPGIEFRTD---------NGPF----KAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (710)
Q Consensus 144 L~~---~p~~~~R~~---------d~~y----~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Qi 192 (710)
+.+ ..++.+... +|.+ ++.-+.|++.....++ ++. +.|..+||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 973 125422111 1111 4444555666666665 332 67888887
No 29
>PLN02998 beta-glucosidase
Probab=97.25 E-value=0.00017 Score=82.80 Aligned_cols=153 Identities=13% Similarity=0.173 Sum_probs=98.7
Q ss_pred hhcCchhHHHHHHHHHhhccccccc-----ceeEEEe--cCeEEECC------EEeEEEEEEee-------CCCC---Cc
Q 005182 11 KMLGANVKVLMLVLLSFCSWEISFV-----KASVSYD--HKAVIING------QKRILISGSIH-------YPRS---TP 67 (710)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~d--~~~~~idG------kp~~i~sG~~H-------y~r~---~~ 67 (710)
|.|....-.|+||+|.|++.+.+.- |..|.|- ..++.+.| |-.-++---.| ...+ .-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~a~D~Y 81 (497)
T PLN02998 2 KLLSNSLMFLPLLALALTAVSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAGHSGVAAGNVACDQY 81 (497)
T ss_pred cchhcchhHHHHHHhcccccccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccccCcCCCCCCcccccHH
Confidence 4555667788999999998886552 2222221 12233322 11111100001 1111 12
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCC-CcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeeccc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (710)
..|+++|+.||+||+|+-|+-|-|+-.+|. .|.+|-+|...-+++|+.+.++||..++-.= -| -+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 358999999999999999999999999996 5778989999999999999999998766541 23 37999986
Q ss_pred C-CCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 147 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
. -|- .++...++..+|.+.+++.+.
T Consensus 154 ~yGGW----~n~~~v~~F~~YA~~~~~~fg 179 (497)
T PLN02998 154 EYGGW----LSQEIVRDFTAYADTCFKEFG 179 (497)
T ss_pred hhCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 3 443 344444555555555555554
No 30
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.19 E-value=0.0013 Score=71.83 Aligned_cols=139 Identities=21% Similarity=0.328 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCC-cceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCC----CCeecc
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGG----FPVWLK 145 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~-G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG----~P~WL~ 145 (710)
+|.|+.||+.|+|+||+=| | +.|.. |..|.+ +..++.+-|+++||.|+|-+- |- .-|...| +-+|..
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS-D~WaDPg~Q~~P~aW~~ 98 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS-DFWADPGKQNKPAAWAN 98 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS-SS--BTTB-B--TTCTS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc-CCCCCCCCCCCCccCCC
Confidence 6899999999999999988 4 45555 666666 777777788899999999873 21 2232222 012221
Q ss_pred cCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccC--CccccCCC--chHH---HHHHHHHHh
Q 005182 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG--PVEWDIGA--PGKA---YAKWAAQMA 218 (710)
Q Consensus 146 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg--~~~~~~~~--~~~~---y~~~l~~~~ 218 (710)
. +-....+++..|.+.++..|++ +|=.+=||||.||.. .+. ..+. .-.. +++.-.+.+
T Consensus 99 ~--------~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~Gmlw-p~g~~~~~~~~a~ll~ag~~AV 163 (332)
T PF07745_consen 99 L--------SFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINNGMLW-PDGKPSNWDNLAKLLNAGIKAV 163 (332)
T ss_dssp S--------SHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGGESTB-TTTCTT-HHHHHHHHHHHHHHH
T ss_pred C--------CHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccccccC-cCCCccCHHHHHHHHHHHHHHH
Confidence 1 3355678899999999999984 455788999999974 332 1121 1222 333334566
Q ss_pred hhcCCCcce-EEecC
Q 005182 219 VGLNTGVPW-VMCKQ 232 (710)
Q Consensus 219 ~~~g~~vP~-~~~~~ 232 (710)
++.+.++.+ ++.+.
T Consensus 164 r~~~p~~kV~lH~~~ 178 (332)
T PF07745_consen 164 REVDPNIKVMLHLAN 178 (332)
T ss_dssp HTHSSTSEEEEEES-
T ss_pred HhcCCCCcEEEEECC
Confidence 666666555 34443
No 31
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.15 E-value=0.00045 Score=78.62 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=75.7
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCC--CcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (710)
..|+++|+.||++|+|+.++-|.|.-.+|. +|++|-+|...-+++|+.+.++||..|+-. ---.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 458999999999999999999999999999 699999999999999999999999977665 2345899998
Q ss_pred cCCCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 146 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
+.-+- .++...+...+|.+.+++.+.
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~g 155 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFG 155 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhC
Confidence 74443 457777888888888888887
No 32
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.0031 Score=67.55 Aligned_cols=133 Identities=18% Similarity=0.292 Sum_probs=100.1
Q ss_pred HHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCC
Q 005182 77 AKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDN 156 (710)
Q Consensus 77 ~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d 156 (710)
.|+.+.=|-+.-.=|+..||++|.|+|+ --|++.+.|+++||.+--- +-+ |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeeccc--eee---ecc-cCCchhhccc-----cCh
Confidence 4444444445556699999999999999 6789999999999965322 222 333 6899998643 255
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCC----ccc---cCCCchHHHHHHHHHHhhhcCCCcceEE
Q 005182 157 GPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP----VEW---DIGAPGKAYAKWAAQMAVGLNTGVPWVM 229 (710)
Q Consensus 157 ~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~----~~~---~~~~~~~~y~~~l~~~~~~~g~~vP~~~ 229 (710)
++.++.+++++..++.+.+ |.|+.|-|=||--. +.. ..+..+.+|+++.=..|++.+.+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999888 46999999999732 111 1123578999999999999999988888
Q ss_pred ecC
Q 005182 230 CKQ 232 (710)
Q Consensus 230 ~~~ 232 (710)
++.
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 776
No 33
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.95 E-value=0.00098 Score=72.52 Aligned_cols=158 Identities=15% Similarity=0.216 Sum_probs=108.2
Q ss_pred EEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEe--eeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCcccc
Q 005182 55 LISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTY--VFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (710)
Q Consensus 55 i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~ty--v~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~ 132 (710)
.+|.+++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~----- 79 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT----- 79 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE-----
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee-----
Confidence 688899887765442 3444555679988875 5599999999999999 89999999999999974332
Q ss_pred ceecCCCCCeecccCCCeEEecC-ChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccc---c------
Q 005182 133 AEWNYGGFPVWLKYVPGIEFRTD-NGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW---D------ 202 (710)
Q Consensus 133 aEw~~GG~P~WL~~~p~~~~R~~-d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~---~------ 202 (710)
==|.. ..|.|+...+.. ... .+...+.+++++++++.+.+. -|.|..|-|=||-=.... .
T Consensus 80 LvW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 80 LVWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp EEESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred EEEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 11333 789999875110 000 123788888888888877762 289999999999633211 0
Q ss_pred CCCchHHHHHHHHHHhhhcCCCcceEEecCC
Q 005182 203 IGAPGKAYAKWAAQMAVGLNTGVPWVMCKQD 233 (710)
Q Consensus 203 ~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~ 233 (710)
+...+.+|+...-+.|++...++.++.++..
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 1112456888888999999999999887754
No 34
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.94 E-value=0.0023 Score=73.35 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=78.7
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCC--CcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (710)
..|+++|+.||++|+|+.|+-|.|.-..|. +|++|-.|....+++|+.|.++||..++-.= -| .+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~-----H~---dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS-----HF---EMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-----CC---CCCHHHH
Confidence 358999999999999999999999999997 5678888999999999999999999877651 12 4899997
Q ss_pred cC-CCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 146 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
+. -|- .++...++..+|.+.+++.++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 64 443 456777777777777777776
No 35
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.89 E-value=0.0024 Score=73.07 Aligned_cols=96 Identities=11% Similarity=0.100 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCC--CcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (710)
..|+++++.||++|+|+.|+-+.|.-.+|. ++++|-+|....+++|+.|.++||..|+-. .-=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 347999999999999999999999999997 556788888899999999999999987765 1225899997
Q ss_pred cC-CCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 146 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
.. -|- .++...++..+|.+.+++.+.
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 63 333 456666666666666666665
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.71 E-value=0.019 Score=56.77 Aligned_cols=137 Identities=14% Similarity=0.201 Sum_probs=83.2
Q ss_pred CCCCccchHHHHHHHHHcCCCEEEEeeeCCCCC-----CC---CcceecccchhHHHHHHHHHHcCCEEEeecCccccce
Q 005182 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-----PT---QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (710)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hE-----p~---~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aE 134 (710)
-.++++.|+++|+.||++|+|+|=+- |...+ |. ++.|.-....-|+.+|++|++.||+|++..+ -+
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~~-- 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--FD-- 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--CC--
Confidence 46899999999999999999998532 32221 22 2223333456899999999999999998873 11
Q ss_pred ecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCCchHHHHHHH
Q 005182 135 WNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWA 214 (710)
Q Consensus 135 w~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 214 (710)
|.|-.. .|+.. ...+-+.|++.|.+ .+.++.+.=+|=|-.|..... ....++.+.|
T Consensus 89 ------~~~w~~--------~~~~~---~~~~~~~v~~el~~---~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l 144 (166)
T PF14488_consen 89 ------PDYWDQ--------GDLDW---EAERNKQVADELWQ---RYGHHPSFYGWYIPYEIDDYN----WNAPERFALL 144 (166)
T ss_pred ------chhhhc--------cCHHH---HHHHHHHHHHHHHH---HHcCCCCCceEEEecccCCcc----cchHHHHHHH
Confidence 223221 22222 11112224444542 234566888888888887542 2245566666
Q ss_pred HHHhhhcCCCcceEE
Q 005182 215 AQMAVGLNTGVPWVM 229 (710)
Q Consensus 215 ~~~~~~~g~~vP~~~ 229 (710)
.+.+++.--+-|+..
T Consensus 145 ~~~lk~~s~~~Pv~I 159 (166)
T PF14488_consen 145 GKYLKQISPGKPVMI 159 (166)
T ss_pred HHHHHHhCCCCCeEE
Confidence 666665544555543
No 37
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.61 E-value=0.0057 Score=70.00 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=75.5
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCC-CcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeeccc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (710)
..++++++.||++|+|+-|+-|.|+-.+|. .|.+|-.|...-+++|+.|.++||.-++-.= -| .+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-----HF---DTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCcHHHHH
Confidence 347999999999999999999999999996 5788889999999999999999998766541 23 48999986
Q ss_pred CCCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 147 ~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
.-|- .++...++..+|.+.+++.+.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5443 455555666666666655554
No 38
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.58 E-value=0.0065 Score=69.50 Aligned_cols=96 Identities=11% Similarity=0.098 Sum_probs=77.8
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCC-CcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeeccc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (710)
..|+++|+.||++|+|+-|+-|-|.-.+|. +|.+|=+|...-+++|+.|.++||..++-.= -| -+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HF---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CC---CCcHHHHH
Confidence 348999999999999999999999999996 5788888999999999999999999777651 23 38999986
Q ss_pred CCCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 147 ~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
.-|- .++...++..+|.+.+++.+.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5443 456666667777777766665
No 39
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.48 E-value=0.0084 Score=68.79 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=73.8
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCC--CcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (710)
..|+++|+.||++|+|+-|+-|.|+-.+|. +|++|=.|...-+++|+.|.++||..++-. | -| -+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--~---H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--T---HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--c---cc---CCCHHHH
Confidence 458999999999999999999999999997 667888899999999999999999866654 1 23 3899997
Q ss_pred cC-CCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 146 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
+. -|- .++...++..+|.+.+++.+.
T Consensus 145 ~~~GGW----~n~~~v~~F~~YA~~~~~~fg 171 (478)
T PRK09593 145 EEYGGW----RNRKMVGFYERLCRTLFTRYK 171 (478)
T ss_pred hhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 64 443 344444555555555555554
No 40
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.0086 Score=67.33 Aligned_cols=119 Identities=15% Similarity=0.114 Sum_probs=72.1
Q ss_pred Cccch-----HHHHHHHHHcCCCEEEEeeeCCCCCCC----CcceecccchhHHHHHHHHHHcCCEEEeecCccccceec
Q 005182 66 TPEMW-----PDLIQKAKDGGLDVIQTYVFWNGHEPT----QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWN 136 (710)
Q Consensus 66 ~~~~W-----~~~l~k~Ka~G~N~V~tyv~Wn~hEp~----~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~ 136 (710)
....| ++.+..||.+|||+||+++.|..+++. |...+=+-..-|++.|+-|++.||+|+|-.-=|-++ .
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~--~ 143 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGG--N 143 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCC--C
Confidence 45568 899999999999999999994443554 322212222378999999999999999984211100 0
Q ss_pred CCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCC
Q 005182 137 YGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 198 (710)
Q Consensus 137 ~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~ 198 (710)
++--..|.... .. .....+++..+-++.|+.+.+ +.-.||++|+=||.-.
T Consensus 144 ~~~~~s~~~~~--~~---~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 144 NGHEHSGYTSD--YK---EENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred CCcCccccccc--cc---ccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 11112222211 00 022233444444455555554 4568999999999863
No 41
>PLN02814 beta-glucosidase
Probab=96.40 E-value=0.0032 Score=72.53 Aligned_cols=96 Identities=15% Similarity=0.219 Sum_probs=75.3
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCC-CcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeeccc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (710)
..|+++++.||++|+|+-|+-|-|+-.+|. +|.+|-+|...-+++|+.|.++||..++-.= -|+ +|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~d---lP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HYD---LPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHHH
Confidence 358999999999999999999999999996 6889999999999999999999998776541 343 7999986
Q ss_pred C-CCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 147 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
. -|- .++...++..+|.+.+++.+.
T Consensus 149 ~yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 149 EYGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred hcCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 4 443 344555555555555555555
No 42
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.36 E-value=0.0099 Score=68.17 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=74.0
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCC--CcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~--~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (710)
..|+++|+.||+||+|+-|+-|-|+-.+|. +|++|=.|...-+++|+.|.++||.-++-.= -| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHHH
Confidence 348999999999999999999999999997 5678888999999999999999998766541 23 3899997
Q ss_pred cC-CCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 146 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
+. -|- .++...++..+|.+.+++.+.
T Consensus 139 ~~yGGW----~n~~~i~~F~~YA~~~f~~fg 165 (476)
T PRK09589 139 TEYGGW----RNRKLIDFFVRFAEVVFTRYK 165 (476)
T ss_pred HhcCCc----CChHHHHHHHHHHHHHHHHhc
Confidence 63 443 344445555555555555555
No 43
>PLN02849 beta-glucosidase
Probab=96.14 E-value=0.0055 Score=70.66 Aligned_cols=96 Identities=15% Similarity=0.231 Sum_probs=73.8
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCC-cceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeeccc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~-G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (710)
..++++|+.||++|+|+-|+-|.|.-.+|.. |.+|=.|...-+++|+.|.++||.-++-.= -| -+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHHH
Confidence 3489999999999999999999999999963 778888999999999999999999766541 23 38999976
Q ss_pred C-CCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 147 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
. -|- .++...++..+|.+.+++.+.
T Consensus 151 ~yGGW----~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 151 DYGGW----INRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred hcCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 3 443 344445555555555555554
No 44
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.07 E-value=0.04 Score=58.49 Aligned_cols=115 Identities=26% Similarity=0.341 Sum_probs=73.3
Q ss_pred hHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHH---cCCEEEeecCccccceecCCCCCeeccc
Q 005182 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQ---AGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~---~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (710)
=.|.|+-+|+.|+|-||+-| |+.---+-|.=.=.|+.|+.+.|++|++ .||+|++.+= |. .=|.- |+-- +
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-YS-DfwaD---PakQ-~ 137 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-YS-DFWAD---PAKQ-K 137 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-ch-hhccC---hhhc-C
Confidence 47899999999999999865 5554333344334567899999988754 7999999871 10 11110 1000 0
Q ss_pred CCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccC
Q 005182 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG 197 (710)
Q Consensus 147 ~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg 197 (710)
.|.-..--+-..-.+++-.|.+..+..++++ |=-+=||||.||-.
T Consensus 138 kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn 182 (403)
T COG3867 138 KPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETN 182 (403)
T ss_pred CcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccC
Confidence 1111111122345667788888888888854 44667999999974
No 45
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.92 E-value=0.077 Score=61.81 Aligned_cols=71 Identities=24% Similarity=0.373 Sum_probs=51.5
Q ss_pred cceEEEEEEeecCCCcccccCCCCCeEEEeeccceEEEEECCEEEEEEEcc-cCCCeEEEecceecCCCccEEEEEEeec
Q 005182 478 SDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGS-LENPKLTFSKNVKLRPGVNKISLLSTSV 556 (710)
Q Consensus 478 tGylwYrt~~~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGs~~g~-~~~~~~~~~~~v~Lk~G~N~L~ILven~ 556 (710)
--.+||. .|+++... .+..|.+.+..- -+|||||+-+|.-.-. ..++.|-+|.+. ||++.|.|+|.=|-.
T Consensus 556 ~P~~w~k-~f~~p~g~------~~t~Ldm~g~GK-G~vwVNG~niGRYW~~~G~Q~~yhvPr~~-Lk~~~N~lvvfEee~ 626 (649)
T KOG0496|consen 556 QPLTWYK-TFDIPSGS------EPTALDMNGWGK-GQVWVNGQNIGRYWPSFGPQRTYHVPRSW-LKPSGNLLVVFEEEG 626 (649)
T ss_pred CCeEEEE-EecCCCCC------CCeEEecCCCcc-eEEEECCcccccccCCCCCceEEECcHHH-hCcCCceEEEEEecc
Confidence 4578888 78776543 246788877654 4699999999965432 235778888875 888999998877766
Q ss_pred C
Q 005182 557 G 557 (710)
Q Consensus 557 G 557 (710)
|
T Consensus 627 ~ 627 (649)
T KOG0496|consen 627 G 627 (649)
T ss_pred C
Confidence 6
No 46
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.87 E-value=0.098 Score=59.67 Aligned_cols=148 Identities=18% Similarity=0.275 Sum_probs=101.5
Q ss_pred cCeEEECCEEeEEEEEEeeC-----CCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHH
Q 005182 43 HKAVIINGQKRILISGSIHY-----PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (710)
Q Consensus 43 ~~~~~idGkp~~i~sG~~Hy-----~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~ 117 (710)
+..|.||+.|.++.++.--+ -|.+-+.-+-.|+-++++|+|++++ |.. |.|.= +.|.++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----GvYEs------d~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----GVYES------DYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----ccccc------hhHHHHhh
Confidence 46789999999999887655 2334555677899999999999999 542 34432 59999999
Q ss_pred HcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc--
Q 005182 118 QAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE-- 195 (710)
Q Consensus 118 ~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENE-- 195 (710)
+.||.|--.. =+.||-. ..|..|+..+++=.+.-+.+|+. +.+||.+.=.||
T Consensus 393 ~lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls~-------HpSviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLSH-------HPSVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhcc-------CCeEEEEeCCCccH
Confidence 9999885332 2456553 25778988888776666666764 458888877665
Q ss_pred -------cCCccccCCC--chH----HHHHHHHHHhhhcCCCcceEEecC
Q 005182 196 -------FGPVEWDIGA--PGK----AYAKWAAQMAVGLNTGVPWVMCKQ 232 (710)
Q Consensus 196 -------yg~~~~~~~~--~~~----~y~~~l~~~~~~~g~~vP~~~~~~ 232 (710)
||..- +.. .-+ -|.+-++++...-.-..|.++...
T Consensus 447 aAl~~nWy~~sf--~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSF--ERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccc--cccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 22110 000 112 355667777777788899887654
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.44 E-value=0.089 Score=50.13 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=63.4
Q ss_pred HHHHHHHHcCCCEEEEeee----CC-----CCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCe
Q 005182 72 DLIQKAKDGGLDVIQTYVF----WN-----GHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (710)
Q Consensus 72 ~~l~k~Ka~G~N~V~tyv~----Wn-----~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~ 142 (710)
+.++.+|++|+|+|.++.= |. .|.+.|+- +..-|.+++++|++.||.|++|...- -.|+..--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998432 22 34444533 12356899999999999999998654 34444455799
Q ss_pred ecccCCCe-------------EEecCChhHHHHHHHHHHHHHHH
Q 005182 143 WLKYVPGI-------------EFRTDNGPFKAAMHKFTEKIVSM 173 (710)
Q Consensus 143 WL~~~p~~-------------~~R~~d~~y~~~~~~~~~~l~~~ 173 (710)
|+..+++- ..-+.|.+|++.+.+-+++|+..
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDR 122 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHc
Confidence 99764321 11233567887666655555443
No 48
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=95.22 E-value=0.14 Score=59.06 Aligned_cols=334 Identities=17% Similarity=0.253 Sum_probs=155.4
Q ss_pred EeEEEEEEeeC------CCCCccchHHHHHHH---HHcCCCEEEEeee---CCCCC----CCCccee---ccc-c---hh
Q 005182 52 KRILISGSIHY------PRSTPEMWPDLIQKA---KDGGLDVIQTYVF---WNGHE----PTQGNYY---FQD-R---YD 108 (710)
Q Consensus 52 p~~i~sG~~Hy------~r~~~~~W~~~l~k~---Ka~G~N~V~tyv~---Wn~hE----p~~G~fd---f~g-~---~d 108 (710)
++.=+||++=- ...+++.=++.|+.+ +-+|++.+|+.|- .+.++ ..|+-|+ |+= . ..
T Consensus 75 ~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~ 154 (496)
T PF02055_consen 75 TIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKY 154 (496)
T ss_dssp E--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTT
T ss_pred EEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhh
Confidence 34447787742 233433322223322 3489999999875 22221 1233222 221 1 12
Q ss_pred HHHHHHHHHHc--CCEEEeecCccccceecCCCCCeecccCCCe----EEec-CChhHHHHHHHHHHHHHHHHHhccccc
Q 005182 109 LVRFIKLVQQA--GLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI----EFRT-DNGPFKAAMHKFTEKIVSMMKAEKLFQ 181 (710)
Q Consensus 109 l~~fi~la~~~--GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~----~~R~-~d~~y~~~~~~~~~~l~~~i~~~~~~~ 181 (710)
+.-+|+.|++. +|+++.-| |+ .|+|++....+ .++. .++.|.+...+|+.+-++..++
T Consensus 155 ~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~----- 219 (496)
T PF02055_consen 155 KIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK----- 219 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH-----
Confidence 34678877664 57777776 54 89999864322 2442 3457888888888887777774
Q ss_pred cCCCceEEeccccccCCcc---ccCC-----C-chHHHHH-HHHHHhhhcCC--CcceEEecC--CCCCC---ccccC--
Q 005182 182 TQGGPIILSQIENEFGPVE---WDIG-----A-PGKAYAK-WAAQMAVGLNT--GVPWVMCKQ--DDAPD---PVINT-- 242 (710)
Q Consensus 182 ~~gGpII~~QiENEyg~~~---~~~~-----~-~~~~y~~-~l~~~~~~~g~--~vP~~~~~~--~~~~~---~~~~~-- 242 (710)
+|=+|=++-+.||..... ..+. . ..++|++ .|.-.+++.++ ++-++..+. ...|+ .++.-
T Consensus 220 -~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~ 298 (496)
T PF02055_consen 220 -EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPE 298 (496)
T ss_dssp -TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHH
T ss_pred -CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChh
Confidence 445999999999986411 0111 1 2355665 47778888876 776666542 12221 11110
Q ss_pred ----CC--Cccc----------cccCCCCCCCCccccccccccccccCCCCC---CCChHHHHHHHHHHHHcCCeeeeee
Q 005182 243 ----CN--GFYC----------EKFVPNQNYKPKMWTEAWTGWFTEFGSAVP---TRPAEDLVFSVARFIQSGGSFINYY 303 (710)
Q Consensus 243 ----~~--g~~~----------~~~~~~~~~~P~~~~E~~~gwf~~wG~~~~---~~~~~~~~~~~~~~l~~g~s~~n~Y 303 (710)
.. +++| +..+...|++.++.||-..|.- .|+.... -..++..+..+-.-+..+++ ++-
T Consensus 299 A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--gw~ 375 (496)
T PF02055_consen 299 AAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--GWI 375 (496)
T ss_dssp HHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--EEE
T ss_pred hHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--eee
Confidence 01 2222 1123457899999999866531 1221111 11223344444444566644 332
Q ss_pred ee------ecCCCCCCC-CCCccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHhhcCcccCCCCccccCCCcceeEEe
Q 005182 304 MY------HGGTNFGRT-SGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVF 376 (710)
Q Consensus 304 M~------hGGTNfG~~-~g~~~~tSYDy~Apl~E~G~~~~pky~~lr~l~~~i~~~~~~l~~~~p~~~~~~~~~~~~~y 376 (710)
++ .||-|++.- ..+.++..=+. +|. ..+|.|+.|..+.+||+-=...+ ... ........+...|
T Consensus 376 ~WNl~LD~~GGP~~~~n~~d~~iivd~~~----~~~--~~~p~yY~~gHfSKFV~PGa~RI-~st--~~~~~~~l~~vAF 446 (496)
T PF02055_consen 376 DWNLALDENGGPNWVGNFCDAPIIVDSDT----GEF--YKQPEYYAMGHFSKFVRPGAVRI-GST--SSSSDSGLEAVAF 446 (496)
T ss_dssp EEESEBETTS---TT---B--SEEEEGGG----TEE--EE-HHHHHHHHHHTTS-TT-EEE-EEE--ESSSTTTEEEEEE
T ss_pred eeeeecCCCCCCcccCCCCCceeEEEcCC----CeE--EEcHHHHHHHHHhcccCCCCEEE-Eee--ccCCCCceeEEEE
Confidence 22 488887542 11221111111 121 23689999998887764311111 110 0001123566677
Q ss_pred ecCCCceeEEEeecCCc-ceeEEEECCc-------eeecCCceeE
Q 005182 377 NSKSGKCAAFLANYDTT-FSAKVSFGNA-------QYDLPPWSIS 413 (710)
Q Consensus 377 ~~~~~~~~~Fl~N~~~~-~~~~v~~~~~-------~~~~p~~sv~ 413 (710)
...+++-+.-+.|..+. ..++|+.++. .++||++|+.
T Consensus 447 ~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~~ 491 (496)
T PF02055_consen 447 LNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSIV 491 (496)
T ss_dssp EETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTEE
T ss_pred ECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCceE
Confidence 76666666555665443 3345666432 4788888764
No 49
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.06 E-value=0.027 Score=63.67 Aligned_cols=96 Identities=17% Similarity=0.301 Sum_probs=74.3
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcc--eecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN--YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~--fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (710)
..++++++.||+||+|+.|+-|.|+-.-|..+. .+=.|....+++++.|.++|+.-++-.- -|+ +|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHHh
Confidence 347899999999999999999999999997654 8888999999999999999999776651 233 799998
Q ss_pred cC-CCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 146 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
+. -|- .+..-.++..+|.+.+++++.
T Consensus 131 ~~ygGW----~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGW----ENRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCc----cCHHHHHHHHHHHHHHHHHhc
Confidence 75 343 233444555666666666655
No 50
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.96 E-value=0.16 Score=56.93 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=82.3
Q ss_pred CccchHHHHHHHHHcCCCEEEEee-------------eCCCCCCCCccee-cccchhHHHHHHHHHHcCCEEEeecCccc
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYV-------------FWNGHEPTQGNYY-FQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv-------------~Wn~hEp~~G~fd-f~g~~dl~~fi~la~~~GL~Vilr~GPyi 131 (710)
.+..-.+.|..++++|+|||-.=| +|.... ||++- =.|..-|...|++|++.||.|+.++-||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 667778999999999999996422 243332 44331 23445788999999999999999998888
Q ss_pred cceecCCC---CCeecccC-CCeE-EecCC-------hhHHHHHHHHHHHH-HHHHHhccccccCCCceEEeccccccC
Q 005182 132 CAEWNYGG---FPVWLKYV-PGIE-FRTDN-------GPFKAAMHKFTEKI-VSMMKAEKLFQTQGGPIILSQIENEFG 197 (710)
Q Consensus 132 ~aEw~~GG---~P~WL~~~-p~~~-~R~~d-------~~y~~~~~~~~~~l-~~~i~~~~~~~~~gGpII~~QiENEyg 197 (710)
.|--..-. -|.|+... |+.. .+... .++.-+++.|+..+ +++++ ++ .|-++|++.=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~--~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR--NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh--CC------CCCceecceeec
Confidence 77532222 27777663 4433 33332 23456788888887 66666 44 577889877655
No 51
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=94.91 E-value=0.066 Score=52.01 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=35.6
Q ss_pred CCceEEEEEEEecCCC--CeEEEEeCCc-ceEEEEEcCcccceee
Q 005182 627 QPMTWYKVRIISILSQ--HILTIFLELI-YEQSICINICHILLSA 668 (710)
Q Consensus 627 ~~~twYkt~F~l~~~~--D~v~Ldl~g~-gKG~~wVNG~nlGRY~ 668 (710)
....|||++|++|... ..++|.+.|. ....|||||+.+|+-.
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~ 111 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHE 111 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEE
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeC
Confidence 4779999999999743 3689999997 5999999999999943
No 52
>PRK09936 hypothetical protein; Provisional
Probab=94.08 E-value=0.2 Score=53.41 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=48.1
Q ss_pred CCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccc-hhHHHHHHHHHHcCCEEEeec
Q 005182 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR-YDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~-~dl~~fi~la~~~GL~Vilr~ 127 (710)
.+++++.|+++++.+|+.||+|+=+ =|..- |.=||.+. -.|.+.++.|++.||.|++..
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLiv--QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL 92 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVV--QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVGL 92 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE--Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEcc
Confidence 5689999999999999999999754 45433 11188875 599999999999999998764
No 53
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=93.25 E-value=14 Score=41.63 Aligned_cols=250 Identities=15% Similarity=0.198 Sum_probs=128.5
Q ss_pred CCCCccchHHHHHHHHHcCCCEEEE-------eeeCCCCCCCCcceecc-cchhHHHHHHHHHHcCCEEEeecCccccce
Q 005182 63 PRSTPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (710)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N~V~t-------yv~Wn~hEp~~G~fdf~-g~~dl~~fi~la~~~GL~Vilr~GPyi~aE 134 (710)
.+..++.|- +.+|++|+.-|-. +-.|.-....-..-+-. ++--|.+|.+.|+++||++-+=-.+ -+
T Consensus 79 ~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~D 152 (384)
T smart00812 79 EKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FD 152 (384)
T ss_pred hhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---HH
Confidence 344565565 5788999985542 11244432211111111 2335678999999999977664332 36
Q ss_pred ecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCCchHHHHHHH
Q 005182 135 WNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWA 214 (710)
Q Consensus 135 w~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 214 (710)
|.. |.|....+....+.+.+.|.++++.|+.+|.++|.+ + ||-|+|- +-..+.. ...--++.|
T Consensus 153 W~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~--Y-----gpd~lWf-D~~~~~~------~~~~~~~~l 215 (384)
T smart00812 153 WFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTR--Y-----KPDLLWF-DGGWEAP------DDYWRSKEF 215 (384)
T ss_pred hCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhc--C-----CCceEEE-eCCCCCc------cchhcHHHH
Confidence 653 544322111112345678899998899999998883 3 3445542 2111110 011113345
Q ss_pred HHHhhhcCCCc-ceEEecCCCCCCccccCCCCcc-c-cccCCCC-CCCCc-cccccccccccccCC-CCCCCChHHHHHH
Q 005182 215 AQMAVGLNTGV-PWVMCKQDDAPDPVINTCNGFY-C-EKFVPNQ-NYKPK-MWTEAWTGWFTEFGS-AVPTRPAEDLVFS 288 (710)
Q Consensus 215 ~~~~~~~g~~v-P~~~~~~~~~~~~~~~~~~g~~-~-~~~~~~~-~~~P~-~~~E~~~gwf~~wG~-~~~~~~~~~~~~~ 288 (710)
.++++++..+. -.+.++.... ..+...+++ + +...+.. ...|. .|+=.-.+|+=+-++ ....++++++...
T Consensus 216 ~~~~~~~qP~~~~vvvn~R~~~---~~~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~~ 292 (384)
T smart00812 216 LAWLYNLSPVKDTVVVNDRWGG---TGCKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIRD 292 (384)
T ss_pred HHHHHHhCCCCceEEEEccccc---cCCCCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHHH
Confidence 55555554332 0122232210 000000111 1 2111111 11121 111111245433333 2336789999998
Q ss_pred HHHHHHcCCeeeeeeeeecCCCCCCCCCCccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHhhcCcccCCCC
Q 005182 289 VARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDP 362 (710)
Q Consensus 289 ~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDy~Apl~E~G~~~~pky~~lr~l~~~i~~~~~~l~~~~p 362 (710)
+....++|+++ -+ .-+-+.+|.+-+..-..|+++...++..++++-...|
T Consensus 293 l~~~Vsk~Gnl---LL---------------------NVgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr~ 342 (384)
T smart00812 293 LVDIVSKGGNL---LL---------------------NVGPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTRP 342 (384)
T ss_pred HhhhcCCCceE---EE---------------------ccCCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCCC
Confidence 88999999873 11 2345678888666778899999999988877655544
No 54
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=93.19 E-value=0.2 Score=52.49 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=51.8
Q ss_pred cCchhhhhCC---CCCCcceEEEEEEeecCCCcccccCCCCCeEEEeeccceEEEEECCEEEEEEEcccCC
Q 005182 464 KDGLWEQVYL---TADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLEN 531 (710)
Q Consensus 464 ~p~~~Eqlg~---t~d~tGylwYrt~~~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGs~~g~~~~ 531 (710)
+|..+.+.++ .+|+.|-+||.+++.++.... .-.+++..|++++++..|.|||||.-+-++.+.+.+
T Consensus 70 vpss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~lP 139 (297)
T KOG2024|consen 70 VPSSFNDIGQDWRLRDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGHLP 139 (297)
T ss_pred cccchhccccCCccccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceeecccccCccc
Confidence 4445555553 368899999999999987663 224567899999999999999999988777765533
No 55
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.78 E-value=0.38 Score=52.28 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=70.9
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCC-------CCCC-------Ccc-eecccchhHHHHHHHHHHcCCEEEeecCcc
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNG-------HEPT-------QGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~-------hEp~-------~G~-fdf~g~~dl~~fi~la~~~GL~Vilr~GPy 130 (710)
.++.-++.|++++++|||+|-.-|.+.. .+|. +|. -.|+ -|..+|+.|++.||.|..++ .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 5667789999999999999976555422 2221 111 0133 79999999999999999776 11
Q ss_pred ccceecC----CCCCeecc-cCCCeEEec----C-----ChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccc
Q 005182 131 VCAEWNY----GGFPVWLK-YVPGIEFRT----D-----NGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN 194 (710)
Q Consensus 131 i~aEw~~----GG~P~WL~-~~p~~~~R~----~-----d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiEN 194 (710)
-...-.. -..|.|+. +.++..... . ||. ..+|++|+..++..|.+ .+ +|=++|++.
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~-~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPG-HPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCC-CHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 1110011 12488876 345532222 1 222 46778877777555542 22 466778874
No 56
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.58 E-value=1.6 Score=52.01 Aligned_cols=53 Identities=26% Similarity=0.288 Sum_probs=38.9
Q ss_pred HHHHHHcCCCEEEE-eeeCCCCCCCCcce----------ecccchhHHHHHHHHHHcCCEEEeec
Q 005182 74 IQKAKDGGLDVIQT-YVFWNGHEPTQGNY----------YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 74 l~k~Ka~G~N~V~t-yv~Wn~hEp~~G~f----------df~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
|.-+|++|+|+|.+ +|+..-.... -.| .|.+..+|.+|++.|+++||.|||..
T Consensus 163 ~dyl~~LGvt~i~L~Pi~e~~~~~~-wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 163 IPYVKELGFTHIELLPVAEHPFDGS-WGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCC-CCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 37779999999998 6765321110 012 34556799999999999999999984
No 57
>smart00642 Aamy Alpha-amylase domain.
Probab=92.17 E-value=0.38 Score=47.50 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=44.7
Q ss_pred hHHHHHHHHHcCCCEEEEeeeCCCCC-------CCCcce-----ecccchhHHHHHHHHHHcCCEEEeecCccccce
Q 005182 70 WPDLIQKAKDGGLDVIQTYVFWNGHE-------PTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~tyv~Wn~hE-------p~~G~f-----df~g~~dl~~fi~la~~~GL~Vilr~GPyi~aE 134 (710)
+.+.|..+|++|+|+|.+-=++...+ -.+..| .|....+|+++++.|+++||.||+..=|-=++.
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 45667779999999999853322221 112222 355678999999999999999999875543333
No 58
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.80 E-value=0.19 Score=56.67 Aligned_cols=167 Identities=15% Similarity=0.126 Sum_probs=110.7
Q ss_pred eEEECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCC-CC---CCcceec-ccchhHHHHHHHHHHc
Q 005182 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EP---TQGNYYF-QDRYDLVRFIKLVQQA 119 (710)
Q Consensus 45 ~~~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~h-Ep---~~G~fdf-~g~~dl~~fi~la~~~ 119 (710)
.|.++++++..++..--++++..++-+++|+-|+.+|++++++. -+- |+ ++|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 47888888877777777778877788899999999999999995 344 65 3333222 2345789999999999
Q ss_pred CCEEEeecCccccceecCCCC---Ceeccc-CCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccc
Q 005182 120 GLYVHLRIGPYVCAEWNYGGF---PVWLKY-VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (710)
Q Consensus 120 GL~Vilr~GPyi~aEw~~GG~---P~WL~~-~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENE 195 (710)
+|+|+++. |.+-=..||. -.|-.. .|+-.+ .|+.++..-++|...+++-.+ ....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998885 4442234453 123311 232211 256666667777777766444 4568999999999
Q ss_pred cCCccccCCCchHHHHHHHHHHhh---hcCCCcceEEe
Q 005182 196 FGPVEWDIGAPGKAYAKWAAQMAV---GLNTGVPWVMC 230 (710)
Q Consensus 196 yg~~~~~~~~~~~~y~~~l~~~~~---~~g~~vP~~~~ 230 (710)
.-+. -...+..+++|+++|+- .+|. -+|+..
T Consensus 148 ~lv~---~p~s~N~f~~w~~emy~yiK~ldd-~hlvsv 181 (587)
T COG3934 148 PLVE---APISVNNFWDWSGEMYAYIKWLDD-GHLVSV 181 (587)
T ss_pred cccc---ccCChhHHHHHHHHHHHHhhccCC-CCeeec
Confidence 3221 12346789999999864 3443 345543
No 59
>PRK05402 glycogen branching enzyme; Provisional
Probab=90.37 E-value=2.6 Score=51.12 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=37.1
Q ss_pred HHHHHHcCCCEEEE-eeeCC----CCCCCCcce-----ecccchhHHHHHHHHHHcCCEEEeec
Q 005182 74 IQKAKDGGLDVIQT-YVFWN----GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 74 l~k~Ka~G~N~V~t-yv~Wn----~hEp~~G~f-----df~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
|.-+|++|+|+|.+ +|+=. .|--.+..| .|.+..+|.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999997 45310 011111111 24556899999999999999999984
No 60
>PRK14706 glycogen branching enzyme; Provisional
Probab=90.18 E-value=5.4 Score=47.75 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEE-eee-------CCCCCCC--CcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 74 IQKAKDGGLDVIQT-YVF-------WNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 74 l~k~Ka~G~N~V~t-yv~-------Wn~hEp~--~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
+.-+|++|+|+|++ +|. |.+.--- .=.=.|....+|.+|++.|+++||.|||..
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 46789999999996 231 3221000 000023456799999999999999999884
No 61
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=89.86 E-value=0.47 Score=52.62 Aligned_cols=72 Identities=26% Similarity=0.235 Sum_probs=50.0
Q ss_pred EEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCccccc
Q 005182 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (710)
Q Consensus 56 ~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~a 133 (710)
+|=++++...+.+..+..|++|++.|+..|=| ++|.|+...=+. ...+..++++|+++||.|++-+.|=+..
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 56677777778889999999999999999999 999999633221 2478899999999999999999885543
No 62
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=89.79 E-value=1.9 Score=42.81 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=32.6
Q ss_pred CCeEEEeeccceEEEEECCEEEEEEEc-----ccCCC----eEEEecceecCCCccEEEEEEeecCC
Q 005182 501 DPLLTIWSAGHALQVFINGQLSGTVYG-----SLENP----KLTFSKNVKLRPGVNKISLLSTSVGL 558 (710)
Q Consensus 501 ~~~L~l~~~~d~~~VfVNG~~vGs~~g-----~~~~~----~~~~~~~v~Lk~G~N~L~ILven~Gr 558 (710)
+++|.|.. .....+||||+.||...- ....+ +|.+.. .|++|.|+|.|++-+.+.
T Consensus 5 ~A~l~isa-~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~--~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 5 SARLYISA-LGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTP--YLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp --EEEEEE-ESEEEEEETTEEEEEE--------BTTEEEEEEEE-TT--T--TTEEEEEEEEEE--S
T ss_pred EEEEEEEe-CeeEEEEECCEEeeCCccccccccCCCceEEEEEeChH--HhCCCCCEEEEEEeCCcc
Confidence 35777765 457889999999997541 11111 344432 489999999999987663
No 63
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.25 E-value=6.5 Score=47.58 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCEEEE-eee-------CCCCCCCCcce----ecccchhHHHHHHHHHHcCCEEEeecCc
Q 005182 72 DLIQKAKDGGLDVIQT-YVF-------WNGHEPTQGNY----YFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (710)
Q Consensus 72 ~~l~k~Ka~G~N~V~t-yv~-------Wn~hEp~~G~f----df~g~~dl~~fi~la~~~GL~Vilr~GP 129 (710)
+.|.-+|++|+|+|++ +|+ |.+.- -|-| .|....+|.+|++.|+++||.|||..=|
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3467889999999997 343 33211 0111 3556689999999999999999998543
No 64
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=87.40 E-value=7.7 Score=40.97 Aligned_cols=131 Identities=16% Similarity=0.203 Sum_probs=75.3
Q ss_pred ccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEE-eecCccccceecCCCCCeecc
Q 005182 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLK 145 (710)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~ 145 (710)
...|++.|+.++++|++.|++.+ +..| ..+...+++ ...+..+.++++++||.|. +.+++. +.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~~-------~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSAH-------RRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCCC-------ccCc----
Confidence 45699999999999999999943 2222 223344554 3578899999999999874 444310 1111
Q ss_pred cCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCC---chHHHHHHHHHHhhhcC
Q 005182 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGA---PGKAYAKWAAQMAVGLN 222 (710)
Q Consensus 146 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 222 (710)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+- ..++. ....... .-.+.++.+.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVY-YEEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Ccccc-cCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 112355556666667777777776 32 45666442 11111 0000000 01245566666777777
Q ss_pred CCc
Q 005182 223 TGV 225 (710)
Q Consensus 223 ~~v 225 (710)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 754
No 65
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=86.48 E-value=0.82 Score=47.92 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCC----CCCCcce-e----cccchhHHHHHHHHHHcCCEEEeec
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGH----EPTQGNY-Y----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~h----Ep~~G~f-d----f~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.+.|.-+|++|+|+|.+-=++... --.+-.| + |....+|.++++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 466889999999999985333321 1111111 1 3356799999999999999999885
No 66
>PLN03059 beta-galactosidase; Provisional
Probab=86.10 E-value=1.2 Score=54.02 Aligned_cols=69 Identities=23% Similarity=0.367 Sum_probs=49.2
Q ss_pred eEEEEEEeecCCCcccccCCCCCeEEEeeccceEEEEECCEEEEEEEc---------------------------ccCCC
Q 005182 480 YLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYG---------------------------SLENP 532 (710)
Q Consensus 480 ylwYrt~~~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGs~~g---------------------------~~~~~ 532 (710)
..||+++|+++... .+..|.+.+..- -+|||||+-+|.-.- ...++
T Consensus 620 ~twYK~~Fd~p~g~------Dpv~LDm~gmGK-G~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~ 692 (840)
T PLN03059 620 LTWYKTTFDAPGGN------DPLALDMSSMGK-GQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQR 692 (840)
T ss_pred ceEEEEEEeCCCCC------CCEEEecccCCC-eeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeE
Confidence 78999999986432 236788877654 459999999996541 22234
Q ss_pred eEEEecceecCCCccEEEEEEeecC
Q 005182 533 KLTFSKNVKLRPGVNKISLLSTSVG 557 (710)
Q Consensus 533 ~~~~~~~v~Lk~G~N~L~ILven~G 557 (710)
-|-+|.+. |++|+|+|.|.=+ .|
T Consensus 693 lYHVPr~~-Lk~g~N~lViFEe-~g 715 (840)
T PLN03059 693 WYHVPRSW-LKPSGNLLIVFEE-WG 715 (840)
T ss_pred EEeCcHHH-hccCCceEEEEEe-cC
Confidence 46688775 8999999977655 45
No 67
>PRK14705 glycogen branching enzyme; Provisional
Probab=85.75 E-value=14 Score=47.19 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCEEEE-eee-------CCCCCCC--CcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 72 DLIQKAKDGGLDVIQT-YVF-------WNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 72 ~~l~k~Ka~G~N~V~t-yv~-------Wn~hEp~--~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
+.|.-+|+||+|+|++ +|+ |.+.--- .=.=.|....||..|++.|+++||.|||-.
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3468899999999997 342 3321100 000134556899999999999999999884
No 68
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=85.14 E-value=8.6 Score=40.56 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=39.0
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHc-CCEEEe
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQA-GLYVHL 125 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~-GL~Vil 125 (710)
..|++.|+.+|++|++.|++-+....... .......+++.+.++++++ ++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL----SRPLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC----CCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 77999999999999999999654321111 1112456899999999999 666554
No 69
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=85.12 E-value=8.3 Score=40.54 Aligned_cols=132 Identities=14% Similarity=0.210 Sum_probs=72.9
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEE-eecCccccceecCCCCCeeccc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 146 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~ 146 (710)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++..+-++++++||.|. +.++.+ + .+|
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~---~~~----- 80 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R---RFP----- 80 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c---CcC-----
Confidence 36999999999999999999532 1221 01122333 3478999999999999875 333210 0 011
Q ss_pred CCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCcccc-CCCchHHHHHHHHHHhhhcCCCc
Q 005182 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWD-IGAPGKAYAKWAAQMAVGLNTGV 225 (710)
Q Consensus 147 ~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~-~~~~~~~y~~~l~~~~~~~g~~v 225 (710)
+.+.|+..+++..+.++++++..+ .+ |.++|.+---..+...... .-..-.+.++.+.+++++.|+.+
T Consensus 81 -----~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 81 -----FGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 223456656666666677666666 22 3455543210000000000 00011246677777888888765
No 70
>PRK12313 glycogen branching enzyme; Provisional
Probab=85.12 E-value=1.7 Score=51.91 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=38.0
Q ss_pred HHHHHHcCCCEEEE-eee-------CCCCCCCC--cceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 74 IQKAKDGGLDVIQT-YVF-------WNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 74 l~k~Ka~G~N~V~t-yv~-------Wn~hEp~~--G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
|.-+|++|+|+|.+ +|+ |.+.-..- =.-.|.+..+|++||+.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999996 453 22110000 00035567899999999999999999984
No 71
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=84.76 E-value=1.6 Score=52.85 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHcCCCEEEEe-ee-------CCCCCC---CCcceecccchhHHHHHHHHHHcCCEEEeecCc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTY-VF-------WNGHEP---TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~ty-v~-------Wn~hEp---~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GP 129 (710)
+.+++.|..+|++|+|+|++= |+ |.++-. ++ .-.|....+|.+||+.|+++||.|||-.=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 447889999999999999972 32 333211 00 113555679999999999999999998533
No 72
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=83.73 E-value=2 Score=50.82 Aligned_cols=59 Identities=25% Similarity=0.341 Sum_probs=41.0
Q ss_pred CccchHHHHHHHHHcCCCEEEE-eee-------CCCCCCCCcce----ecccchhHHHHHHHHHHcCCEEEee
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEPTQGNY----YFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~t-yv~-------Wn~hEp~~G~f----df~g~~dl~~fi~la~~~GL~Vilr 126 (710)
..+.=.+.|.-+|+||+++|+. +|. |.+--- |-| .|..-.||.+||+.|+++||-|||-
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~--g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGT--GYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcc--eeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3444467899999999999997 221 322110 001 1334479999999999999999997
No 73
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=83.48 E-value=2.9 Score=48.28 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=43.7
Q ss_pred EEEeeCCCCCccchHHHHHHHH-HcCCCEEEEe-ee---CCCC-C-CCCc--ceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 57 SGSIHYPRSTPEMWPDLIQKAK-DGGLDVIQTY-VF---WNGH-E-PTQG--NYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 57 sG~~Hy~r~~~~~W~~~l~k~K-a~G~N~V~ty-v~---Wn~h-E-p~~G--~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
-|.-|......+.|+..|+.++ +.||..||+. +| -... | ..+| .|||+ .||.+++...++||+-+++.
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 3444555567788999999886 8899999983 22 0101 1 1123 29999 99999999999999988777
Q ss_pred C
Q 005182 128 G 128 (710)
Q Consensus 128 G 128 (710)
|
T Consensus 105 ~ 105 (486)
T PF01229_consen 105 G 105 (486)
T ss_dssp -
T ss_pred E
Confidence 5
No 74
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=83.44 E-value=2.1 Score=49.21 Aligned_cols=60 Identities=10% Similarity=0.258 Sum_probs=42.7
Q ss_pred cchH---HHHHHHHHcCCCEEEEe-eeCCC-----CCCCC-cce-------------ecccchhHHHHHHHHHHcCCEEE
Q 005182 68 EMWP---DLIQKAKDGGLDVIQTY-VFWNG-----HEPTQ-GNY-------------YFQDRYDLVRFIKLVQQAGLYVH 124 (710)
Q Consensus 68 ~~W~---~~l~k~Ka~G~N~V~ty-v~Wn~-----hEp~~-G~f-------------df~g~~dl~~fi~la~~~GL~Vi 124 (710)
+.|. +.|.-+|++|+++|-+- ++-+. |--.+ .-| .|....+|+++++.|++.||+||
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 4564 56778899999999874 55332 22111 122 23456799999999999999999
Q ss_pred eec
Q 005182 125 LRI 127 (710)
Q Consensus 125 lr~ 127 (710)
+-.
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 986
No 75
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=83.37 E-value=11 Score=41.43 Aligned_cols=141 Identities=14% Similarity=0.199 Sum_probs=87.1
Q ss_pred CCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHH---HcCCEEEeecCccccceecCCCCC
Q 005182 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ---QAGLYVHLRIGPYVCAEWNYGGFP 141 (710)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~---~~GL~Vilr~GPyi~aEw~~GG~P 141 (710)
..|+..+..++.+|+.|++.--.|-.|- .|.+-|++-++..- +.+|...|+ |.+-.|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 3678889999999999999999988774 45556666665543 344544343 22333311
Q ss_pred eecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCCchHHHHHHHHHHhhhc
Q 005182 142 VWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL 221 (710)
Q Consensus 142 ~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~ 221 (710)
.|-.....+.+-...+ =.+..++.++.|.+.+++..+.--+|-||+++=--.++ .+-+++++.+++.++++
T Consensus 117 ~w~g~~~~~l~~q~y~-~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~~ 187 (345)
T PF14307_consen 117 RWDGRNNEILIEQKYS-GEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKEA 187 (345)
T ss_pred ccCCCCccccccccCC-chhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHHc
Confidence 1222222221111111 01224667788888888766666788999987322222 23578999999999999
Q ss_pred CCCcceEEecC
Q 005182 222 NTGVPWVMCKQ 232 (710)
Q Consensus 222 g~~vP~~~~~~ 232 (710)
|+.-+.+....
T Consensus 188 G~~giyii~~~ 198 (345)
T PF14307_consen 188 GLPGIYIIAVQ 198 (345)
T ss_pred CCCceEEEEEe
Confidence 99877655443
No 76
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=83.19 E-value=4.4 Score=42.63 Aligned_cols=117 Identities=20% Similarity=0.134 Sum_probs=64.9
Q ss_pred eeEeehhhcCchhHHHHHHHHHhhcccccccceeEEEecCe-------EEECCEEeEEEEEEeeCCCCCccchHHHHHHH
Q 005182 5 QVLVKWKMLGANVKVLMLVLLSFCSWEISFVKASVSYDHKA-------VIINGQKRILISGSIHYPRSTPEMWPDLIQKA 77 (710)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~-------~~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~ 77 (710)
-|.+.|||-+--.+.+.++--..... .......|-+-... =.+++.++.+-+=.+|+.-.-.-.=+=..+++
T Consensus 2 ~i~~NwKmn~~~~~~~~~~~~l~~~~-~~~~~v~v~i~Pp~~~L~~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~~mL 80 (242)
T cd00311 2 LVAGNWKMNGTLAEALELAKALNAVL-KDESGVEVVVAPPFTYLAAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEML 80 (242)
T ss_pred EEEEECCcccCHHHHHHHHHHHHhhc-cccCCceEEEECCHHHHHHHHHHccCCCeEEEecccccccCCCCcCcCCHHHH
Confidence 36788999986555555542221111 10111222221100 02344444433333454322111112234579
Q ss_pred HHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 78 KDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 78 Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
|++|++.|-+ -|..++--|.-+ +.++.+=++.|.++||.+|++.|
T Consensus 81 ~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 81 KDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 9999999999 454444444433 66888999999999999999986
No 77
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=82.59 E-value=2.3 Score=49.82 Aligned_cols=53 Identities=23% Similarity=0.338 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCEEEE-eee-------CCCC-----CCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 72 DLIQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 72 ~~l~k~Ka~G~N~V~t-yv~-------Wn~h-----Ep~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
+.|.-+|++|+|+|.+ +|+ |.+. .|.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688999999999997 342 3221 1111 24456799999999999999999984
No 78
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=81.56 E-value=35 Score=40.26 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=48.4
Q ss_pred cchHHHHHHHHHcCCCEEEEe-eeCCCCCCCCcce--------ecccc----hhHHHHHHHHHHcCCEEEeecCccccce
Q 005182 68 EMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGNY--------YFQDR----YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~ty-v~Wn~hEp~~G~f--------df~g~----~dl~~fi~la~~~GL~Vilr~GPyi~aE 134 (710)
+.=++.|..|+...||.|+.| ..|.+|.|-|+.= |+.++ .-++..|+.|++.|+.++.=--=|.+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456789999999999999999 8899999987533 23332 4688999999999999875432222222
Q ss_pred e--cCCCCCeeccc
Q 005182 135 W--NYGGFPVWLKY 146 (710)
Q Consensus 135 w--~~GG~P~WL~~ 146 (710)
. ..|=.|.|-.-
T Consensus 198 ~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 198 NYEEDGVSPEWGLY 211 (559)
T ss_dssp T--S--SS-GGBEE
T ss_pred CcccccCCchhhhh
Confidence 1 24556888753
No 79
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=81.46 E-value=5 Score=43.87 Aligned_cols=112 Identities=17% Similarity=0.266 Sum_probs=70.5
Q ss_pred CccchHHHHHHHHHcCCCEEEE-------eeeCCCCCCCCcceecc-c-chhHHHHHHHHHHcCCEEEeecCccccceec
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQ-D-RYDLVRFIKLVQQAGLYVHLRIGPYVCAEWN 136 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~t-------yv~Wn~hEp~~G~fdf~-g-~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~ 136 (710)
.++.-++.|+.+|+.|+|+|-+ .|.+....|..-+..-. . ..|+.++++.++++|||+|.|+=-+- ...-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk-D~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK-DPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec-ChHH
Confidence 3456788999999999999875 24454433333222211 1 26999999999999999999973221 1111
Q ss_pred CCCCCeeccc-CCCeEEecCC-----hhHHHHHHHHHHHHHHHHHhcc
Q 005182 137 YGGFPVWLKY-VPGIEFRTDN-----GPFKAAMHKFTEKIVSMMKAEK 178 (710)
Q Consensus 137 ~GG~P~WL~~-~p~~~~R~~d-----~~y~~~~~~~~~~l~~~i~~~~ 178 (710)
..--|.|-.+ ..+-..|..+ .+|.+++.+|.-.|++.+++.+
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 1114666553 1222233221 3478899999999999988543
No 80
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=80.70 E-value=3.7 Score=34.22 Aligned_cols=40 Identities=28% Similarity=0.490 Sum_probs=28.4
Q ss_pred eEEEeeccceEEEEECCEEEEEEEcccCCCeEEEecceecCCCccEEEEE
Q 005182 503 LLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLL 552 (710)
Q Consensus 503 ~L~l~~~~d~~~VfVNG~~vGs~~g~~~~~~~~~~~~v~Lk~G~N~L~IL 552 (710)
+|.|.+.-..+.|||||+++|... +++. .|++|.+.|.|.
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v~ 42 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTVE 42 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEEE
Confidence 688888888999999999999432 1222 266787766643
No 81
>PLN02960 alpha-amylase
Probab=79.45 E-value=3.8 Score=50.17 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCEEEE-eee-------CCCCCCCC--cceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 71 PDLIQKAKDGGLDVIQT-YVF-------WNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~t-yv~-------Wn~hEp~~--G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
++.|.-+|++|+|+|++ +|+ |.+.---. =.-.|....+|.+||+.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45689999999999997 343 33211000 00124456799999999999999999985
No 82
>PRK01060 endonuclease IV; Provisional
Probab=79.25 E-value=14 Score=38.80 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=54.5
Q ss_pred hHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEE--EeecCccccceecCCCCCeecccC
Q 005182 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWLKYV 147 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~V--ilr~GPyi~aEw~~GG~P~WL~~~ 147 (710)
+++.|+.++++|++.|++.+. +-+.-..+.++- .+++++-++++++||.+ +.--+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~h~~~~---------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILVHAPYL---------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEEecceE----------------
Confidence 889999999999999999542 112111222222 26888999999999973 11123332
Q ss_pred CCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 148 PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 148 p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
+.+-+.|+..+++..+.+++.++..+
T Consensus 74 --~nl~~~d~~~r~~s~~~~~~~i~~A~ 99 (281)
T PRK01060 74 --INLGNPNKEILEKSRDFLIQEIERCA 99 (281)
T ss_pred --ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11334567777777777777777766
No 83
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=79.16 E-value=3 Score=48.93 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=41.7
Q ss_pred chHHHHHHHHHcCCCEEEEe-eeCCCCCCCCccee----------cccchhHHHHHHHHHHcCCEEEeec
Q 005182 69 MWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~ty-v~Wn~hEp~~G~fd----------f~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
-+.+.|.-+|++|+|+|-+- ++=+-.. ...|+ |....+|++|++.|+++||+|||-.
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36678899999999999873 4422110 01232 4456799999999999999999885
No 84
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=78.95 E-value=3.5 Score=48.96 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCCEEEE-eee---------------CCCCC-----CCCccee----cc--cchhHHHHHHHHHHcCCEEE
Q 005182 72 DLIQKAKDGGLDVIQT-YVF---------------WNGHE-----PTQGNYY----FQ--DRYDLVRFIKLVQQAGLYVH 124 (710)
Q Consensus 72 ~~l~k~Ka~G~N~V~t-yv~---------------Wn~hE-----p~~G~fd----f~--g~~dl~~fi~la~~~GL~Vi 124 (710)
+.|.-+|++|+|+|.+ +|+ |.+.- |. +.|- +. ...+|++||+.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999997 343 33321 10 0110 10 13689999999999999999
Q ss_pred eec
Q 005182 125 LRI 127 (710)
Q Consensus 125 lr~ 127 (710)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 985
No 85
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=78.70 E-value=3.4 Score=40.69 Aligned_cols=125 Identities=14% Similarity=0.110 Sum_probs=71.0
Q ss_pred HHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEe
Q 005182 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFR 153 (710)
Q Consensus 74 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R 153 (710)
|+.++++|+..|+............ ...++++.++++++||.+..--.+.. +.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---ccc----------cccccc
Confidence 6789999999999965433222211 34789999999999999653321111 100 000123
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccc--cccCCcccc-CCCchHHHHHHHHHHhhhcCCCc
Q 005182 154 TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIE--NEFGPVEWD-IGAPGKAYAKWAAQMAVGLNTGV 225 (710)
Q Consensus 154 ~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiE--NEyg~~~~~-~~~~~~~y~~~l~~~~~~~g~~v 225 (710)
+..++ ++...+.+.+.++..+ .+ |.+.|.+..- +........ .-..-.+.++.+.+.+.+.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 34444 6777777888888777 33 4566766654 222111000 00012346667777777888654
No 86
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=77.86 E-value=36 Score=38.22 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=53.2
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceeccc---chhHHHHHHHHHHcCCEEE-eecCccccceecCCCCC
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD---RYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFP 141 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g---~~dl~~fi~la~~~GL~Vi-lr~GPyi~aEw~~GG~P 141 (710)
++....+++++++++|+..|+.. ..+ --| |+.+- ..+++++-++++++||.|. +-++-+.+..+..|+
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~---~~d-l~P--~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~-- 101 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFH---DDD-LIP--FGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG-- 101 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEec---ccc-cCC--CCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC--
Confidence 34467899999999999999973 110 011 11110 2357899999999999975 333211111222222
Q ss_pred eecccCCCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 142 VWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 142 ~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
+-+.|+..+++.-+.+++.++.-+
T Consensus 102 ----------las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 102 ----------FTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334466666555555566565555
No 87
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=77.74 E-value=4 Score=35.71 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=35.0
Q ss_pred CCeEEEeeccceEEEEECCEEEEEEEcccCCCeEEEecceecCCCccEEEEEEeecCC
Q 005182 501 DPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGL 558 (710)
Q Consensus 501 ~~~L~l~~~~d~~~VfVNG~~vGs~~g~~~~~~~~~~~~v~Lk~G~N~L~ILven~Gr 558 (710)
...|++.......+-||||+++|+.... ..+.+.. ..+|.++|+| ++..|+
T Consensus 33 ~l~l~a~~~~~~~~W~vdg~~~g~~~~~---~~~~~~~---~~~G~h~l~v-vD~~G~ 83 (89)
T PF06832_consen 33 PLVLKAAGGRGPVYWFVDGEPLGTTQPG---HQLFWQP---DRPGEHTLTV-VDAQGR 83 (89)
T ss_pred eEEEEEeCCCCcEEEEECCEEcccCCCC---CeEEeCC---CCCeeEEEEE-EcCCCC
Confidence 3556665556699999999999876543 3343331 2679999988 777773
No 88
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=77.09 E-value=9.2 Score=42.15 Aligned_cols=92 Identities=22% Similarity=0.306 Sum_probs=67.7
Q ss_pred hhcccccccceeEEEecCeEEECCEEeEEEEEEeeCCCC-CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceeccc
Q 005182 27 FCSWEISFVKASVSYDHKAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD 105 (710)
Q Consensus 27 ~~~~~~~~~~~~v~~d~~~~~idGkp~~i~sG~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g 105 (710)
|.+-++-+....|.+. .+.+.|.+++++.| +--+ .++.-.+.-+.+|++|.++++.|+|= |+---|.|.|
T Consensus 70 ~~sr~~~~~~t~v~~~--~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G 140 (335)
T PRK08673 70 LASREFKPEPTVVKVG--DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQG 140 (335)
T ss_pred hhhcccCCCCCEEEEC--CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCccccc
Confidence 4445555556666664 37777888888888 3333 55666777888899999999999883 4444477876
Q ss_pred --chhHHHHHHHHHHcCCEEEeec
Q 005182 106 --RYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 106 --~~dl~~fi~la~~~GL~Vilr~ 127 (710)
..-|..+.+.|++.||.++-.+
T Consensus 141 ~g~~gL~~L~~~~~~~Gl~v~tev 164 (335)
T PRK08673 141 LGEEGLKLLAEAREETGLPIVTEV 164 (335)
T ss_pred ccHHHHHHHHHHHHHcCCcEEEee
Confidence 5778888888999999998876
No 89
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=76.94 E-value=3.6 Score=43.24 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=39.4
Q ss_pred ccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
+...++.|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 667889999999999999998 34544444 33777999999999999999997
No 90
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=76.50 E-value=9.1 Score=46.98 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=48.7
Q ss_pred ccccCchhhhhC-CCCCCcceEEEEEEeecCCCcccccCCCCCeEEEeeccceEEEEECCEEEEEEEccc
Q 005182 461 TFTKDGLWEQVY-LTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSL 529 (710)
Q Consensus 461 ~~~~p~~~Eqlg-~t~d~tGylwYrt~~~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGs~~g~~ 529 (710)
+..+|.+|+..+ .-...+.-++|.+++.++... .+....|.+....-.+.||+||+.+++..+-.
T Consensus 44 ~i~VP~~w~~~~~~~~~~~~~~~y~~~~~~~~~~----~~~~~~l~f~~~~~~~~v~~ng~~~l~~eg~~ 109 (808)
T COG3250 44 AIAVPGNWQDQGEYDRPIYTNVWYPREVFPPKVP----AGNRIGLYFDAVDTLAKVWLNGQEVLEFQGVY 109 (808)
T ss_pred CccCCccHhhcCccCcceecceeeeecccCCccc----cCCceEEEEeccccceeEEeCCeEEEEecCce
Confidence 555677777777 445567778999998666443 45567888888888999999999999887654
No 91
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=76.18 E-value=46 Score=34.43 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=35.1
Q ss_pred chHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEe
Q 005182 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vil 125 (710)
.+++.+++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999984321 12578899999999999764
No 92
>PRK10785 maltodextrin glucosidase; Provisional
Probab=76.04 E-value=5.5 Score=47.25 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCEEEE-eeeCC--CCCCCCcce-----ecccchhHHHHHHHHHHcCCEEEeec
Q 005182 71 PDLIQKAKDGGLDVIQT-YVFWN--GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~t-yv~Wn--~hEp~~G~f-----df~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.+.|.-+|++|+|+|-+ +||=+ .|--....| .|.+..+|++|++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788899999999997 46522 111111111 14466899999999999999999874
No 93
>PRK09505 malS alpha-amylase; Reviewed
Probab=74.39 E-value=6.3 Score=47.50 Aligned_cols=58 Identities=12% Similarity=0.179 Sum_probs=42.4
Q ss_pred hHHHHHHHHHcCCCEEEE-eeeCCCCCCC----Cc------------------ceecccchhHHHHHHHHHHcCCEEEee
Q 005182 70 WPDLIQKAKDGGLDVIQT-YVFWNGHEPT----QG------------------NYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~----~G------------------~fdf~g~~dl~~fi~la~~~GL~Vilr 126 (710)
+.+.|.-+|++|+|+|-+ +++=+.|... .| .-.|....+|+.|++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567889999999999986 4553333211 11 112445689999999999999999998
Q ss_pred c
Q 005182 127 I 127 (710)
Q Consensus 127 ~ 127 (710)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 6
No 94
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=74.15 E-value=6.6 Score=46.19 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=41.1
Q ss_pred hHHHHHHHHHcCCCEEEE-eeeCCCCCCCC-ccee----------cccchhHHHHHHHHHHcCCEEEeec
Q 005182 70 WPDLIQKAKDGGLDVIQT-YVFWNGHEPTQ-GNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~t-yv~Wn~hEp~~-G~fd----------f~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
+.+.|.-+|++|+++|-+ +|+-+ |.. ..|| |....||+++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 567889999999999987 45422 211 1232 3456799999999999999999875
No 95
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=73.15 E-value=12 Score=48.22 Aligned_cols=112 Identities=17% Similarity=0.272 Sum_probs=64.1
Q ss_pred CeEEECCEEeEEE-EEEe--eCCCC--CccchHHHHHHHHHcCCCEEEE-eee-CCC-CCC--CCccee----c----cc
Q 005182 44 KAVIINGQKRILI-SGSI--HYPRS--TPEMWPDLIQKAKDGGLDVIQT-YVF-WNG-HEP--TQGNYY----F----QD 105 (710)
Q Consensus 44 ~~~~idGkp~~i~-sG~~--Hy~r~--~~~~W~~~l~k~Ka~G~N~V~t-yv~-Wn~-hEp--~~G~fd----f----~g 105 (710)
-.+.|||++.+.+ +-++ ..+++ +-+.|++.|+.+|++|+|+|-. +|+ =.. ..| ..+.+. | .|
T Consensus 103 P~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~ 182 (1464)
T TIGR01531 103 PMLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDG 182 (1464)
T ss_pred CeeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCc
Confidence 3466666333332 2222 34554 5577999999999999999986 343 110 000 112222 3 36
Q ss_pred chhHHHHHHHHHHc-CCEEEeecCccccceecCCC-CCeecccCCCeEEecCChhHHH
Q 005182 106 RYDLVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGG-FPVWLKYVPGIEFRTDNGPFKA 161 (710)
Q Consensus 106 ~~dl~~fi~la~~~-GL~Vilr~GPyi~aEw~~GG-~P~WL~~~p~~~~R~~d~~y~~ 161 (710)
..|+.++++.|++. ||++|+.. + |+-=+ -=.||.+.|+.-.-..+.++++
T Consensus 183 ~~d~~~lV~~~h~~~Gm~~ilDv---V---~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~ 234 (1464)
T TIGR01531 183 KNDVQALVEKLHRDWNVLSITDI---V---FNHTANNSPWLLEHPEAAYNCITSPHLR 234 (1464)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEe---e---ecccccCCHHHHhChHhhcCCCCCchhh
Confidence 67999999999996 99999874 1 11111 1247766665433333444443
No 96
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=72.99 E-value=5.1 Score=46.90 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=41.1
Q ss_pred chHHHHHHHHHcCCCEEEEe-eeCCCCCCC-Cccee----------cccchhHHHHHHHHHHcCCEEEeec
Q 005182 69 MWPDLIQKAKDGGLDVIQTY-VFWNGHEPT-QGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~ty-v~Wn~hEp~-~G~fd----------f~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
-+.+.|.-+|++|+|+|-+- |+ .. +. ...|| |....+++++++.|+++||+|||-.
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~-~~--~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFF-QS--PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCc-CC--CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 46778999999999999873 43 10 11 11222 4456899999999999999999863
No 97
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=72.53 E-value=13 Score=40.16 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=50.5
Q ss_pred CCccchHHHHHHHHHcCCCEEEEeeeCCCCCCC-Ccceecccc--hhHHHHHHHHHHcCCEEEeecCccccce
Q 005182 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (710)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~-~G~fdf~g~--~dl~~fi~la~~~GL~Vilr~GPyi~aE 134 (710)
...+..++.++++|+.||.+=.+.+=..++... -+.|.|+-. -|..++++..++.|++|++..=|+|+..
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~ 93 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQK 93 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 366678999999999997664444433333322 135665533 2899999999999999999998998753
No 98
>PLN00196 alpha-amylase; Provisional
Probab=72.48 E-value=17 Score=41.51 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEEe-eeCCC--CCCCCc-cee-----cccchhHHHHHHHHHHcCCEEEeec
Q 005182 71 PDLIQKAKDGGLDVIQTY-VFWNG--HEPTQG-NYY-----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~ty-v~Wn~--hEp~~G-~fd-----f~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.+.|.-+|++|+++|-+. ++=+. |--.+. -|+ |....+|+++++.|++.||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 477888999999999885 43221 111121 122 3345799999999999999999885
No 99
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=71.80 E-value=1.8 Score=44.84 Aligned_cols=54 Identities=13% Similarity=0.181 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
-...+.+.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+.+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE~ 132 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILEP 132 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEEE
Confidence 5678899999999999999997665544334444 89999999999999999993
No 100
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=70.83 E-value=56 Score=34.13 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=68.5
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccC
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~ 147 (710)
..+++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|.. .+|. | +++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~-~-----~~~~~~~~-- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE-T-----NGYPYNMM-- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc-c-----cCcCcccc--
Confidence 358999999999999999983210 011011 121 24788999999999999753 2221 1 23333221
Q ss_pred CCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCC---chHHHHHHHHHHhhhcCCC
Q 005182 148 PGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGA---PGKAYAKWAAQMAVGLNTG 224 (710)
Q Consensus 148 p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g~~ 224 (710)
..++.-+++..+.+++.++.-+ . =|.+.|.+-.-.. +... .... .-.+.++.|.+.+.+.|+.
T Consensus 79 ------~~~~~~r~~~~~~~~~~i~~a~--~----lGa~~i~~~~~~~-~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 79 ------LGDEHMRRESLDMIKLAMDMAK--E----MNAGYTLISAAHA-GYLT-PPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHH--H----hCCCEEEEcCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 1234444444455555555555 2 2445554422111 1000 0000 1224667777788888765
Q ss_pred c
Q 005182 225 V 225 (710)
Q Consensus 225 v 225 (710)
+
T Consensus 145 l 145 (275)
T PRK09856 145 L 145 (275)
T ss_pred E
Confidence 4
No 101
>PLN02361 alpha-amylase
Probab=70.29 E-value=9.9 Score=42.97 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCC---CCCCCcc-ee----cccchhHHHHHHHHHHcCCEEEeec
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNG---HEPTQGN-YY----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~---hEp~~G~-fd----f~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.+.|.-+|++|+++|-+.=+... |--.+.. |+ |....+|+++|+.|+++||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 45677889999999988533221 2111211 22 4456799999999999999999875
No 102
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=70.16 E-value=35 Score=35.69 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=55.6
Q ss_pred hHHHHHHHHHcCCCEEEEeeeCCCCCCCCcce-ecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccCC
Q 005182 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVP 148 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~f-df~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p 148 (710)
-++.|+.+.++|++.|+. ...+|..-.- +++ ..+++++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 457899999999999999 4555533110 222 236889999999999986542 3432
Q ss_pred CeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 149 GIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 149 ~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
+.+.+.|+..+++..+++++.++..+
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~ 94 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE 94 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12345577777777777777777666
No 103
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=70.04 E-value=9.3 Score=41.85 Aligned_cols=72 Identities=25% Similarity=0.301 Sum_probs=59.4
Q ss_pred EEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcc-eecccchhHHHHHHHHHHcCCEEEeecCccccce
Q 005182 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (710)
Q Consensus 56 ~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~-fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aE 134 (710)
+|=++.+.|.+.+.=...|++|...|+..|=| ++|.|++.. --|. -+.++++.|+++|++||+..-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 56677788888888889999999999999988 899998742 1233 577999999999999999998876554
No 104
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=69.98 E-value=63 Score=33.96 Aligned_cols=126 Identities=17% Similarity=0.247 Sum_probs=71.3
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEE-eecCccccceecCCCCCeeccc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 146 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~ 146 (710)
..|++.++.++++|+..|++.+. ..++ ....++++ ..+++.+-++++++||.|. +.++... .++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~~-------~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAHR-------RFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEeccccc-------ccC-----
Confidence 36999999999999999999432 1111 01112333 2468899999999999874 3332110 011
Q ss_pred CCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCCc-------hHHHHHHHHHHhh
Q 005182 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAP-------GKAYAKWAAQMAV 219 (710)
Q Consensus 147 ~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~-------~~~y~~~l~~~~~ 219 (710)
+-+.|+.-++...+.+++.++..+ .+ |.++|-+. +.. ..++.. -.+.++.|.++++
T Consensus 86 -----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~ 148 (283)
T PRK13209 86 -----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELAS 148 (283)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 112455556666666777777666 22 45666542 110 001110 1345566777777
Q ss_pred hcCCCc
Q 005182 220 GLNTGV 225 (710)
Q Consensus 220 ~~g~~v 225 (710)
+.|+.+
T Consensus 149 ~~GV~i 154 (283)
T PRK13209 149 RASVTL 154 (283)
T ss_pred HhCCEE
Confidence 777654
No 105
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=69.83 E-value=24 Score=37.63 Aligned_cols=85 Identities=24% Similarity=0.323 Sum_probs=63.1
Q ss_pred ccceeEEEecCeEEECCEEeEEEEEEeeCCCC-CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecc--cchhHH
Q 005182 34 FVKASVSYDHKAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DRYDLV 110 (710)
Q Consensus 34 ~~~~~v~~d~~~~~idGkp~~i~sG~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~--g~~dl~ 110 (710)
..+..|.+. .+.+.+.+++++.|=. -+ .++.-.+.-+++|++|+..++.|.+= |+=--+.|. |...|.
T Consensus 11 ~~~~~~~~~--~~~~g~~~~~~iaGPC---sie~~~~~~~~A~~lk~~g~~~~r~~~~k----pRTs~~s~~G~g~~gl~ 81 (266)
T PRK13398 11 GEKTIVKVG--DVVIGGEEKIIIAGPC---AVESEEQMVKVAEKLKELGVHMLRGGAFK----PRTSPYSFQGLGEEGLK 81 (266)
T ss_pred CCCcEEEEC--CEEEcCCCEEEEEeCC---cCCCHHHHHHHHHHHHHcCCCEEEEeeec----CCCCCCccCCcHHHHHH
Confidence 334555553 3677777888888843 22 56677888999999999999998775 332234666 578999
Q ss_pred HHHHHHHHcCCEEEeec
Q 005182 111 RFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 111 ~fi~la~~~GL~Vilr~ 127 (710)
.+-+.|++.||.++-.|
T Consensus 82 ~l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 82 ILKEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHHHcCCCEEEee
Confidence 99999999999998876
No 106
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=69.64 E-value=15 Score=29.96 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEe
Q 005182 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (710)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vil 125 (710)
|..-.+.++.+.+.|+|..++|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 5567788999999999999999732 333 58877765 5778999999999988754
No 107
>PRK14565 triosephosphate isomerase; Provisional
Probab=69.37 E-value=20 Score=37.63 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCc
Q 005182 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (710)
Q Consensus 73 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GP 129 (710)
..+++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|-
T Consensus 77 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiGE 127 (237)
T PRK14565 77 SAKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVGE 127 (237)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 455899999999999 454444444433 233334448999999999999973
No 108
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=69.11 E-value=9.8 Score=39.89 Aligned_cols=52 Identities=12% Similarity=0.332 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GP 129 (710)
...++.++.+|++||++|++ ..|..+++ ..+..++|+.++++||+|+-..|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 56778888999999999998 34655554 347789999999999999998875
No 109
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=67.54 E-value=8.9 Score=46.34 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCEEEE-eeeCCCCC---CCCc-----cee----------c---ccchhHHHHHHHHHHcCCEEEeec
Q 005182 73 LIQKAKDGGLDVIQT-YVFWNGHE---PTQG-----NYY----------F---QDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 73 ~l~k~Ka~G~N~V~t-yv~Wn~hE---p~~G-----~fd----------f---~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.|.-+|++|+|+|.+ +|+=...+ ...| -|| | ....+|++||+.|+++||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 477899999999997 45411111 1111 111 1 124689999999999999999985
No 110
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=67.46 E-value=73 Score=33.19 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=34.5
Q ss_pred hHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEe
Q 005182 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vil 125 (710)
+++.|++++++|++.|++. . |. ..+++.+.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 7889999999999999992 1 11 13789999999999999854
No 111
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=67.12 E-value=14 Score=41.56 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=43.5
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
..+.|+++|+.+|++||+.... |..- ...+.- ..|...++.|++.|+++++.+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaL----Nig~--~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFAL----NIGS--SDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----eccc--CCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 7889999999999999999988 5542 222333 378899999999999999998
No 112
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=66.61 E-value=39 Score=36.49 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=52.7
Q ss_pred CCCCccchHHHHHHHHHcCCC--EEEEeeeCCCCCCCCcceecccc--hhHHHHHHHHHHcCCEEEeecCccccce
Q 005182 63 PRSTPEMWPDLIQKAKDGGLD--VIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (710)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N--~V~tyv~Wn~hEp~~G~fdf~g~--~dl~~fi~la~~~GL~Vilr~GPyi~aE 134 (710)
...+.+.-++.++++++.|+. +|-+=+.|. ..-|.|.|+-. -|..++++..++.|+++++..=|+|+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 446777889999999999965 555544453 34576766532 3899999999999999999999999753
No 113
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=66.44 E-value=13 Score=45.72 Aligned_cols=64 Identities=19% Similarity=0.127 Sum_probs=45.0
Q ss_pred CccchHHHHHHHHHcCCCEEEEe-eeCC----CCCCCC---c--ceecccchhHHHHHHHHHHcCCEEEeecCc
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTY-VFWN----GHEPTQ---G--NYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~ty-v~Wn----~hEp~~---G--~fdf~g~~dl~~fi~la~~~GL~Vilr~GP 129 (710)
+-+.+.+.|.-++++|+++|-+- |+=+ .|--.. . .-.|.+..+|.+|++.|+++||.||+-.=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44558899999999999999763 3311 111000 0 112457889999999999999999998644
No 114
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=66.40 E-value=27 Score=36.55 Aligned_cols=98 Identities=19% Similarity=0.371 Sum_probs=66.3
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCC--cceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCee
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVW 143 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~--G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~W 143 (710)
..-.|+++|..+|++||+-|+. +.-|.-+ -..||+. .....+.+++.+.|+ |+ |-+|
T Consensus 16 ~~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~-~er~~l~~ai~etgv----~i-pSmC----------- 74 (287)
T COG3623 16 NGFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSK-EERLALVNAIQETGV----RI-PSMC----------- 74 (287)
T ss_pred CCCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCH-HHHHHHHHHHHHhCC----Cc-cchh-----------
Confidence 3456999999999999999999 7777654 4678873 344577889999998 33 3333
Q ss_pred cccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecc
Q 005182 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (710)
Q Consensus 144 L~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Qi 192 (710)
|..+....+-+.|+.-++...+.+.+-+..-. ++ .|=-+|+
T Consensus 75 lSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQL 115 (287)
T COG3623 75 LSAHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQL 115 (287)
T ss_pred hhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEee
Confidence 11111122557889888887777776655444 44 3556676
No 115
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=65.93 E-value=9.3 Score=49.13 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEE-eeeCCCCCCC---Cc-----cee----------cc--cchhHHHHHHHHHHcCCEEEeec
Q 005182 72 DLIQKAKDGGLDVIQT-YVFWNGHEPT---QG-----NYY----------FQ--DRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 72 ~~l~k~Ka~G~N~V~t-yv~Wn~hEp~---~G-----~fd----------f~--g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
+.|.-+|++|+|+|.+ +|+=...|.. .| -|| |. +..+|+++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4577899999999997 4652222211 11 022 23 56799999999999999999984
No 116
>PRK12677 xylose isomerase; Provisional
Probab=65.77 E-value=56 Score=36.77 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=55.2
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecc---cchhHHHHHHHHHHcCCEEE-eecCccccceecCCCCCee
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVW 143 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~---g~~dl~~fi~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~W 143 (710)
-.+++.+++++++|+..|+. |.+..--|+.+ -...++++.++++++||.|. +-+.-+.+..+..|+
T Consensus 31 ~~~~E~v~~~a~~Gf~gVEl------h~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~---- 100 (384)
T PRK12677 31 LDPVEAVHKLAELGAYGVTF------HDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGA---- 100 (384)
T ss_pred CCHHHHHHHHHHhCCCEEEe------cccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCc----
Confidence 34789999999999999988 22211112222 12358899999999999976 544322222222222
Q ss_pred cccCCCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 144 L~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
+-+.|+..++...+.+.+.++.-+
T Consensus 101 --------lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 101 --------FTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred --------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344566666665555666666555
No 117
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=64.49 E-value=52 Score=36.95 Aligned_cols=122 Identities=11% Similarity=0.064 Sum_probs=67.2
Q ss_pred CCCcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCe----EEec-CChhHHHHHHHHHHHH
Q 005182 96 PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI----EFRT-DNGPFKAAMHKFTEKI 170 (710)
Q Consensus 96 p~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~----~~R~-~d~~y~~~~~~~~~~l 170 (710)
+..|.|||+....=+.|++.|++.|...++-+ .--.|.|+.+.... ...+ -.+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 56799999977777789999999999987765 12478888753110 0001 1245667778888888
Q ss_pred HHHHHhccccccCCCceEEeccccccCCccc-------cCCC-chHHHHHHHHHHhhhcCCCcceEEecC
Q 005182 171 VSMMKAEKLFQTQGGPIILSQIENEFGPVEW-------DIGA-PGKAYAKWAAQMAVGLNTGVPWVMCKQ 232 (710)
Q Consensus 171 ~~~i~~~~~~~~~gGpII~~QiENEyg~~~~-------~~~~-~~~~y~~~l~~~~~~~g~~vP~~~~~~ 232 (710)
+++++++++ +|=-+--=||...... .+.. ...+.++.|....++.|++.-+..|+.
T Consensus 164 v~~~~~~GI------~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 164 VKHYKKWGI------NFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHCTT--------EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHhcCC------ccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 888864332 5555556688753211 1111 235688888888889999876555443
No 118
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=63.11 E-value=37 Score=36.76 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=44.3
Q ss_pred CccchHHHHHHHHHcCCCEEEEeee----CCCCCCC----CcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPT----QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp~----~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
+.+.-.+.|+.|...|+|.+..|+- +.-+ |+ +|.|. ..+++++++.|++.||.||-.+-
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~-p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPeid 81 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGE-PEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLIQ 81 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCC-cccccCCCCcC---HHHHHHHHHHHHHcCCEEEecCC
Confidence 4567899999999999999999753 3222 21 23333 24999999999999999997653
No 119
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=63.09 E-value=15 Score=42.60 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=80.8
Q ss_pred chHHHHHHHHHcCCCEEEEeeeCCCCCCCC---cceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecc
Q 005182 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ---GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~---G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (710)
.++++++.||++|+++-|.-|-|+-.=|.- +.-+-.|..--..+|+...++||..++-. | -| .+|.+|-
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cC---CCCHHHH
Confidence 478999999999999999999999887753 45777888888899999999999866554 1 34 3788887
Q ss_pred c-CCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 005182 146 Y-VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (710)
Q Consensus 146 ~-~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q 191 (710)
+ .-+-.-+..=..|+++.+--+++...++| -+..=|.+.|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 6 33331122223467777777777777777 44333556655554
No 120
>PTZ00333 triosephosphate isomerase; Provisional
Probab=62.05 E-value=38 Score=35.97 Aligned_cols=49 Identities=24% Similarity=0.237 Sum_probs=39.3
Q ss_pred HHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 74 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
-.++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL-----GHSERRQYFGET-NEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999999 555555555333 56888899999999999999997
No 121
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=61.75 E-value=6.6 Score=41.36 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=63.5
Q ss_pred ceeEeehhhcCchhHHHHHHHHHhhcccccccceeEEEecCeEE-------ECCEEeEEEEEEeeCCCCCccchHHHHHH
Q 005182 4 KQVLVKWKMLGANVKVLMLVLLSFCSWEISFVKASVSYDHKAVI-------INGQKRILISGSIHYPRSTPEMWPDLIQK 76 (710)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-------idGkp~~i~sG~~Hy~r~~~~~W~~~l~k 76 (710)
|-|+..|||-+..-+...++- .|+..........|-+--.... +.+..+.+-+=.+|+.-.-+-.=+=...+
T Consensus 1 kii~~NwKmn~~~~~~~~~~~-~l~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~i~igAQnv~~~~~Ga~TGevS~~m 79 (244)
T PF00121_consen 1 KIIIGNWKMNGTGEEALEFLK-ELLNAKLPNKDVEVVIAPPFTYLSSVSKILKGSNIKIGAQNVSPEDSGAFTGEVSAEM 79 (244)
T ss_dssp SEEEEEETBSGSHHHHHHHHH-HHHHHHCHTTTEEEEEEESGGGHHHHHHHHTTTTSEEEESS-BSSSSBS-TTHHBHHH
T ss_pred CEEEEehhhCcCHHHHHHHHH-HHHhcccccCCeeEEEEecchhHHHHHhhccCCeEEEecccccchhhcccHHHhHHHH
Confidence 457889999995555444432 2222222222222222111111 11333333333344433211122334568
Q ss_pred HHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 77 AKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 77 ~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
+|++|++.|-+ + |..++-.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 80 L~d~G~~~vii----G-HSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 80 LKDLGCKYVII----G-HSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHHTTESEEEE----S-CHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHhhCCEEEe----c-cccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 99999999999 4 444443343 3456899999999999999999986
No 122
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=61.70 E-value=18 Score=35.83 Aligned_cols=54 Identities=33% Similarity=0.369 Sum_probs=28.9
Q ss_pred CCCeEEEee----ccceEEEEECCEEEEEEE-----------------cccCCCeEEEecceecCCCccEEEEEEee
Q 005182 500 QDPLLTIWS----AGHALQVFINGQLSGTVY-----------------GSLENPKLTFSKNVKLRPGVNKISLLSTS 555 (710)
Q Consensus 500 ~~~~L~l~~----~~d~~~VfVNG~~vGs~~-----------------g~~~~~~~~~~~~v~Lk~G~N~L~ILven 555 (710)
+..+|+|.- ..-+.+|.||| .++... +......++||.. .|++|.|+|+|-+..
T Consensus 78 ~~~tL~i~la~a~~~~~~~V~vNg-~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~-~L~~G~Nti~lt~~~ 152 (167)
T PF14683_consen 78 GTYTLRIALAGASAGGRLQVSVNG-WSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPAS-LLKAGENTITLTVPS 152 (167)
T ss_dssp --EEEEEEEEEEETT-EEEEEETT-EE-----------S--GGGT---S---EEEEEE-TT-SS-SEEEEEEEEEE-
T ss_pred CcEEEEEEeccccCCCCEEEEEcC-ccCCccccccCCCCceeeCceecccEEEEEEEEcHH-HEEeccEEEEEEEcc
Confidence 346777653 35688999999 444421 1111124566655 599999999887765
No 123
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=61.59 E-value=16 Score=48.15 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=46.0
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCc---cee----------cccchhHHHHHHHHHHcCCEEEeecCc
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG---NYY----------FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G---~fd----------f~g~~dl~~fi~la~~~GL~Vilr~GP 129 (710)
+-+.|.+.|.-+|++|+|+|-+-=++ +..+| .|| |.+..+|++|++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 55679999999999999999873222 22222 122 457789999999999999999988544
No 124
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=61.43 E-value=18 Score=44.73 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=45.2
Q ss_pred CccchHHHHHHHHHcCCCEEEEe-eeCCCCCCCCc------cee-------cccchhHHHHHHHHHHcCCEEEeecCc
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQG------NYY-------FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~ty-v~Wn~hEp~~G------~fd-------f~g~~dl~~fi~la~~~GL~Vilr~GP 129 (710)
+-+.+.+.|.-++++|+|+|-+- ++ +..+| ..| |.+..+|++|++.|+++||.|||-.=|
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44568999999999999999873 32 22222 122 346789999999999999999998644
No 125
>PF10435 BetaGal_dom2: Beta-galactosidase, domain 2; InterPro: IPR018954 This is the second domain of the five-domain beta-galactosidase enzyme that altogether catalyses the hydrolysis of beta(1-3) and beta(1-4) galactosyl bonds in oligosaccharides as well as the inverse reaction of enzymatic condensation and trans-glycosylation. This domain is made up of 16 antiparallel beta-strands and an alpha-helix at its C terminus. The fold of this domain appears to be unique. In addition, the last seven strands of the domain form a subdomain with an immunoglobulin-like (I-type Ig) fold in which the first strand is divided between the two beta-sheets. In penicillin spp this strand is interrupted by a 12-residue insertion which forms an additional edge-strand to the second beta-sheet of the sub-domain. The remainder of the second domain forms a series of beta-hairpins at its N terminus, four strands of which are contiguous with part of the Ig-like sub-domain, forming in total a seven-stranded antiparallel beta-sheet. This domain is associated with IPR001944 from INTERPRO, which is N-terminal to it, but itself has no metazoan members. ; GO: 0004565 beta-galactosidase activity; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A.
Probab=61.33 E-value=18 Score=36.40 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=37.4
Q ss_pred cCCCcceeEEeec-CCCceeEEE-eecCC-------cceeEEEECCceeecCC--ceeE-------e-cCC----CCcee
Q 005182 366 SLGKNQEAHVFNS-KSGKCAAFL-ANYDT-------TFSAKVSFGNAQYDLPP--WSIS-------V-LPD----CKTAV 422 (710)
Q Consensus 366 ~~~~~~~~~~y~~-~~~~~~~Fl-~N~~~-------~~~~~v~~~~~~~~~p~--~sv~-------i-l~d----~~~~l 422 (710)
...++.++.++.. ++++...|+ +++.+ ...++|....++++||+ .++. | +.| ..+++
T Consensus 13 ~~t~~~~i~vt~l~np~t~a~Fyvvrh~~~~s~~~~~f~l~v~Ts~G~~tiPq~~g~ltL~GrdSKIlvtDy~~G~~~Ll 92 (183)
T PF10435_consen 13 VYTSNSAIFVTHLRNPDTGAGFYVVRHNDSTSTASTSFTLNVNTSDGTLTIPQLGGSLTLNGRDSKILVTDYDFGGHTLL 92 (183)
T ss_dssp SSCS-TTEEEEEEE-STTS-EEEEEEESSTT--S-EEE-EEEEETTEEEEE-TTSS-EEE-TT-EEEEEEEEEETTEEEE
T ss_pred eecCCCCEEEEEeeCCCCCcEEEEEEccCCCCCCceEEEEEeecCCeeEEecccCCcEEECCcceeEEEeecccCCcEEE
Confidence 3456677888875 445666777 34321 24457777789999995 2222 2 222 67889
Q ss_pred eecccccc
Q 005182 423 FNTARVGV 430 (710)
Q Consensus 423 ~~ta~v~~ 430 (710)
|.||+|.+
T Consensus 93 YSTAeilT 100 (183)
T PF10435_consen 93 YSTAEILT 100 (183)
T ss_dssp EESSEEEE
T ss_pred EechheEE
Confidence 99998754
No 126
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=61.26 E-value=16 Score=39.36 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=40.9
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCC---CCCCCCcceec-cc----chhHHHHHHHHHHcCCEEEeec
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWN---GHEPTQGNYYF-QD----RYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn---~hEp~~G~fdf-~g----~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.+..-.++++.+|..|+|++-+=+==. +.=|....+.= .+ -.|+.-||+.|+|.|||+|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 455668899999999999987622100 11122221110 00 1389999999999999999996
No 127
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=61.17 E-value=15 Score=45.70 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCCEEEeec
Q 005182 107 YDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 107 ~dl~~fi~la~~~GL~Vilr~ 127 (710)
.+++++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999974
No 128
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=60.49 E-value=16 Score=38.60 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=36.5
Q ss_pred HHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 73 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
..+++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 455799999999999 555555555433 33444445559999999999997
No 129
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=59.31 E-value=16 Score=46.42 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHcCCEEEeec
Q 005182 107 YDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 107 ~dl~~fi~la~~~GL~Vilr~ 127 (710)
.+|+++|+.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999985
No 130
>PRK03705 glycogen debranching enzyme; Provisional
Probab=58.43 E-value=17 Score=43.83 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCEEEE-eeeCCCCCCCC---c-----cee----------ccc-----chhHHHHHHHHHHcCCEEEeec
Q 005182 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ---G-----NYY----------FQD-----RYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 73 ~l~k~Ka~G~N~V~t-yv~Wn~hEp~~---G-----~fd----------f~g-----~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.|.-+|++|+|+|.+ +|+=...++.. | -|| |.. ..+|+++++.|+++||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999997 45411111110 1 011 222 2589999999999999999984
No 131
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=57.77 E-value=43 Score=37.14 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=51.1
Q ss_pred CeEEECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeee----CCCCCC-----------------------
Q 005182 44 KAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------------- 96 (710)
Q Consensus 44 ~~~~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp----------------------- 96 (710)
|+|+||=.| || .+.+...+.|+.|...++|+...++- |.+--+
T Consensus 4 RG~mLD~aR--------~f--~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~ 73 (357)
T cd06563 4 RGLMLDVSR--------HF--FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGG 73 (357)
T ss_pred cceeeeccc--------cC--cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccc
Confidence 555655444 44 36888999999999999999998863 432111
Q ss_pred -----CCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 97 -----TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 97 -----~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
..|.|. ..|++++++.|++.|+.||-.+
T Consensus 74 ~~~~~~~~~YT---~~di~eiv~yA~~rgI~VIPEI 106 (357)
T cd06563 74 GDGTPYGGFYT---QEEIREIVAYAAERGITVIPEI 106 (357)
T ss_pred cCCCccCceEC---HHHHHHHHHHHHHcCCEEEEec
Confidence 123333 3499999999999999999774
No 132
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=57.71 E-value=52 Score=37.17 Aligned_cols=89 Identities=20% Similarity=0.284 Sum_probs=56.7
Q ss_pred eCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCC----cceecccc---hhHHHHHHHHHHcCCEEEeecCccccc
Q 005182 61 HYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDR---YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (710)
Q Consensus 61 Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~----G~fdf~g~---~dl~~fi~la~~~GL~Vilr~GPyi~a 133 (710)
+|+.++.+.-.+.+++++++|++.+.+=--|....... |.+--+-. .-|..+++.+++.||+.=|+..|-+++
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 45667778888999999999998776655576542111 33322111 248999999999999998888887654
Q ss_pred ee--cCCCCCeecccCCC
Q 005182 134 EW--NYGGFPVWLKYVPG 149 (710)
Q Consensus 134 Ew--~~GG~P~WL~~~p~ 149 (710)
.= -+-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 21 12347999987554
No 133
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=57.48 E-value=56 Score=34.65 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=37.1
Q ss_pred HHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCc
Q 005182 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (710)
Q Consensus 74 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GP 129 (710)
..++|++|++.|-+ +|-| ++-.|+=+ ...+.+=++.|.++||.+||+.|=
T Consensus 81 ~~mL~d~G~~~vii----GHSE-RR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvGE 130 (251)
T COG0149 81 AEMLKDLGAKYVLI----GHSE-RRLYFGET-DELIAKKVKAAKEAGLTPILCVGE 130 (251)
T ss_pred HHHHHHcCCCEEEE----Cccc-cccccccc-hHHHHHHHHHHHHCCCeEEEEcCC
Confidence 45799999999999 4444 44333333 345668899999999999999873
No 134
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=56.81 E-value=24 Score=33.63 Aligned_cols=53 Identities=25% Similarity=0.428 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhc
Q 005182 107 YDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAE 177 (710)
Q Consensus 107 ~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~ 177 (710)
.||..||++|++.|+.|++=.-| +++.|-- .-|+ =.+.-++++++|-.+++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd---------ytG~--------~~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYD---------YTGL--------SKEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHH---------HTT----------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHH---------HhCC--------CHHHHHHHHHHHHHHHHHC
Confidence 49999999999999998766645 5666631 1121 1355677889998888843
No 135
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=55.86 E-value=96 Score=34.17 Aligned_cols=74 Identities=11% Similarity=0.187 Sum_probs=55.6
Q ss_pred eeCCCC---CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccch--hH--HHHHHHHHHcCCEEEeecCcccc
Q 005182 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRY--DL--VRFIKLVQQAGLYVHLRIGPYVC 132 (710)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~--dl--~~fi~la~~~GL~Vilr~GPyi~ 132 (710)
+|.+|. +.+.-++.++++++.||.+=.+.+=+.++. ..+.|+|+..+ |. .++++..++.|++|++..=|+++
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 466678999999999998766655444333 24677776543 77 99999999999999999999997
Q ss_pred ce
Q 005182 133 AE 134 (710)
Q Consensus 133 aE 134 (710)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 136
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=55.83 E-value=1.8e+02 Score=30.72 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=49.8
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcce--ecccc--hhHHHHHHHHHHcCCEEEeecCccc
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY--YFQDR--YDLVRFIKLVQQAGLYVHLRIGPYV 131 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~f--df~g~--~dl~~fi~la~~~GL~Vilr~GPyi 131 (710)
..+...+.++.+++.||-.=.+.+=+.+.+. .+.| +|+-. -|..++|+..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5667889999999999986666655554443 3566 55432 3899999999999999999998877
No 137
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=55.71 E-value=24 Score=36.26 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 73 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
...++|++|++.|-+ +|-|.+ |..+ |+.+=++.|.++||.+|++.
T Consensus 73 S~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 345799999999999 555554 5555 69999999999999999997
No 138
>PLN02877 alpha-amylase/limit dextrinase
Probab=55.19 E-value=23 Score=44.30 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCCEEEeec
Q 005182 107 YDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 107 ~dl~~fi~la~~~GL~Vilr~ 127 (710)
++++++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999984
No 139
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=55.06 E-value=37 Score=40.71 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=37.5
Q ss_pred HHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 73 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
..+++|++|++.|-+ -|..++..|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 473 Sa~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~K~~~al~~GL~pIvCVG 522 (645)
T PRK13962 473 SGPMLAEIGVEYVII-----GHSERRQYFGET-DELVNKKVLAALKAGLTPILCVG 522 (645)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCCcCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 345799999999999 555555555433 34455555999999999999986
No 140
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=54.42 E-value=35 Score=27.85 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=35.0
Q ss_pred chHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEee
Q 005182 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr 126 (710)
..++.++++|+.|+++|.+ .-|. ++. ...++.+++++.||.||..
T Consensus 16 ~~~~~~~~a~~~g~~~v~i----TDh~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI----TDHG------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE----eeCC------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999998 5554 222 3568889999999988643
No 141
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=53.86 E-value=42 Score=36.02 Aligned_cols=108 Identities=13% Similarity=0.164 Sum_probs=67.2
Q ss_pred EEEEEEeeCCCCCcc-chH---HHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCc
Q 005182 54 ILISGSIHYPRSTPE-MWP---DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (710)
Q Consensus 54 ~i~sG~~Hy~r~~~~-~W~---~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GP 129 (710)
+-+++..|+...+.. ..+ ++|++-.++|.+.+-|-. .||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~----------~Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQL----------FYDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccc----------eecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 568888887664322 222 344443369999998833 35555 7889999999997765444444
Q ss_pred ccc---------ceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 130 YVC---------AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 130 yi~---------aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
..+ .+|..--+|.|+.+.=. ....++....+.--++..++++.+.
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 333 57777778999986200 0122334445566667777777776
No 142
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=53.74 E-value=39 Score=36.88 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=44.3
Q ss_pred CccchHHHHHHHHHcCCCEEEEeee--CCCC---CCC------------------------CcceecccchhHHHHHHHH
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVF--WNGH---EPT------------------------QGNYYFQDRYDLVRFIKLV 116 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~--Wn~h---Ep~------------------------~G~fdf~g~~dl~~fi~la 116 (710)
+.+..++.|+.|-..++|++..++- |.+- .|. .|.|. ..++.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 6888999999999999999998654 3321 111 12222 35999999999
Q ss_pred HHcCCEEEeec
Q 005182 117 QQAGLYVHLRI 127 (710)
Q Consensus 117 ~~~GL~Vilr~ 127 (710)
++.|+.||-.+
T Consensus 92 ~~rgI~vIPEI 102 (326)
T cd06564 92 KDRGVNIIPEI 102 (326)
T ss_pred HHcCCeEeccC
Confidence 99999998664
No 143
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=53.27 E-value=26 Score=38.72 Aligned_cols=112 Identities=21% Similarity=0.374 Sum_probs=66.7
Q ss_pred EEEEeeeCCCCC---CCCcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHH
Q 005182 84 VIQTYVFWNGHE---PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFK 160 (710)
Q Consensus 84 ~V~tyv~Wn~hE---p~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~ 160 (710)
.|.+.|+|+++- |.+ ..|+.|+++|++|+--+ .=||+ +-+.|+... +.. ++
T Consensus 32 yvD~fvywsh~~~~iPp~------------~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~l----L~~-~~--- 85 (339)
T cd06547 32 YVDTFVYFSHSAVTIPPA------------DWINAAHRNGVPVLGTF----IFEWT--GQVEWLEDF----LKK-DE--- 85 (339)
T ss_pred hhheeecccCccccCCCc------------HHHHHHHhcCCeEEEEE----EecCC--CchHHHHHH----hcc-Cc---
Confidence 478889999853 333 66999999999997432 33565 334565431 111 11
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCCchHHHHHHHHHHhhhc--CCCcceEE
Q 005182 161 AAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL--NTGVPWVM 229 (710)
Q Consensus 161 ~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~--g~~vP~~~ 229 (710)
+...++.++|+++.+.+++ + | +.+-+||..+... ..+.-.++++.|++.+++. +..|-|+.
T Consensus 86 ~~~~~~a~kLv~lak~yGf---D-G--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 86 DGSFPVADKLVEVAKYYGF---D-G--WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred ccchHHHHHHHHHHHHhCC---C-c--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 2235677888888886655 2 2 7777888873110 0112345777777777764 33444553
No 144
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=53.12 E-value=94 Score=28.82 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=44.5
Q ss_pred eEEEEEEeecCCCcccccCCCCCeEEEeeccceEEEEECCEEEEEEEcccC-------CCeEEEecceecCCC-ccEEEE
Q 005182 480 YLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLE-------NPKLTFSKNVKLRPG-VNKISL 551 (710)
Q Consensus 480 ylwYrt~~~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGs~~g~~~-------~~~~~~~~~v~Lk~G-~N~L~I 551 (710)
.+-+++.|..+.+.. -++.+. ..|.+.+||||+.|-...+... ..... ..+.|.+| .+.|.|
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~--~~v~l~~g~~y~i~i 116 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTS--GTVTLEAGGKYPIRI 116 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEE--EEEEE-TT-EEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEE--EEEEeeCCeeEEEEE
Confidence 467888888876652 244444 6889999999999987765432 12222 22446664 788888
Q ss_pred EEeecC
Q 005182 552 LSTSVG 557 (710)
Q Consensus 552 Lven~G 557 (710)
...+.+
T Consensus 117 ~y~~~~ 122 (145)
T PF07691_consen 117 EYFNRG 122 (145)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 877776
No 145
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=52.18 E-value=20 Score=31.35 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=26.8
Q ss_pred cCCCceEEeccccc-cCCccccC----CC-chHHHHHHHHHH---hhhcCCCcceEE
Q 005182 182 TQGGPIILSQIENE-FGPVEWDI----GA-PGKAYAKWAAQM---AVGLNTGVPWVM 229 (710)
Q Consensus 182 ~~gGpII~~QiENE-yg~~~~~~----~~-~~~~y~~~l~~~---~~~~g~~vP~~~ 229 (710)
++...|.+|+|-|| .++....+ +. ....+.+||+++ +|+.+.+.|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 45568999999999 55222111 11 235566666665 567788898754
No 146
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.21 E-value=24 Score=39.03 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=44.5
Q ss_pred CCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 64 r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
|.+...-.-..+.+|++|.++|.+.|+|.-.++.+ -+-.-..+|.++.+.|+++||-+++.+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 54443333346789999999999999999553320 011223489999999999999999875
No 147
>PRK14566 triosephosphate isomerase; Provisional
Probab=50.92 E-value=44 Score=35.65 Aligned_cols=49 Identities=24% Similarity=0.215 Sum_probs=37.9
Q ss_pred HHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 74 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
-+++|++|++.|-+ -|..++..|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII-----GHSERRRMYGET-SNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999999 455445444432 45677789999999999999986
No 148
>PRK09875 putative hydrolase; Provisional
Probab=50.68 E-value=86 Score=33.95 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=57.9
Q ss_pred eEEEecCeEEECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHH
Q 005182 38 SVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (710)
Q Consensus 38 ~v~~d~~~~~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~ 117 (710)
.+++-+..++++..+.. +......-..+.=.+.|+.+|++|.+||= |.++ ..-.||...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiV--------d~T~----~g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVI--------EMTN----RYMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEE--------ecCC----CccCcCHHHHHHHHH
Confidence 45666666776653211 11111111334445678889999999873 3333 122469999999999
Q ss_pred HcCCEEEeecCccccceecCCCCCeeccc
Q 005182 118 QAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (710)
Q Consensus 118 ~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 146 (710)
+-|+.||..+|-|.-.. +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999986332 6888874
No 149
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=50.57 E-value=27 Score=38.01 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=49.5
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCc--ceecccch--hHHHHHHHHHHcCCEEEeecCcccc
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYYFQDRY--DLVRFIKLVQQAGLYVHLRIGPYVC 132 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G--~fdf~g~~--dl~~fi~la~~~GL~Vilr~GPyi~ 132 (710)
..+.-++.++++++.||-+=.+.+=|.+.. ..+ .|+|+-.+ |..++|+..++.|++|++..=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 555678899999999888755555454433 334 77776543 8999999999999999998777763
No 150
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=49.82 E-value=63 Score=39.05 Aligned_cols=127 Identities=12% Similarity=0.040 Sum_probs=74.1
Q ss_pred EeEEEEEEeeCCC-CC----ccchHHHHHHHHHcCCCEEE---------------EeeeCCCCCCCCcceecccchhHHH
Q 005182 52 KRILISGSIHYPR-ST----PEMWPDLIQKAKDGGLDVIQ---------------TYVFWNGHEPTQGNYYFQDRYDLVR 111 (710)
Q Consensus 52 p~~i~sG~~Hy~r-~~----~~~W~~~l~k~Ka~G~N~V~---------------tyv~Wn~hEp~~G~fdf~g~~dl~~ 111 (710)
+..++...+-|-. .. .+.-...|+.+|++|+|||= .|++|.+.--+...||- |
T Consensus 313 ~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~~-----~-- 385 (671)
T PRK14582 313 PQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFNR-----V-- 385 (671)
T ss_pred CEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcCH-----H--
Confidence 4455555554433 22 24577899999999999985 45567332222222221 1
Q ss_pred HHHHHHHcCCEEEeecCccccc---------eecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhcccccc
Q 005182 112 FIKLVQQAGLYVHLRIGPYVCA---------EWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQT 182 (710)
Q Consensus 112 fi~la~~~GL~Vilr~GPyi~a---------Ew~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~ 182 (710)
...++.+.|+.|..+..||-.. +++..+-|.-... +-..| =.+|..++++|++.|.+-|+++
T Consensus 386 aw~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r--l~P~~pe~r~~i~~i~~dla~~----- 456 (671)
T PRK14582 386 AWQLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIHP--EQYRR--LSPFDDRVRAQVGMLYEDLAGH----- 456 (671)
T ss_pred HHHHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccCC--CCCcC--CCCCCHHHHHHHHHHHHHHHHh-----
Confidence 3455899999999999998642 1211111211111 00112 1346788999999998888843
Q ss_pred CCCceEEecccccc
Q 005182 183 QGGPIILSQIENEF 196 (710)
Q Consensus 183 ~gGpII~~QiENEy 196 (710)
.+|=++|...+-
T Consensus 457 --~~~dGilf~Dd~ 468 (671)
T PRK14582 457 --AAFDGILFHDDA 468 (671)
T ss_pred --CCCceEEecccc
Confidence 256666666553
No 151
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=49.57 E-value=2.2e+02 Score=30.75 Aligned_cols=121 Identities=16% Similarity=0.067 Sum_probs=79.7
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecc
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (710)
.-+.-+.+|+.+|.-+. .|++|- +...-|+.++.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 34556889999999888 999973 122367788999999999999886 333
Q ss_pred cCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCCchHHHHHHHHHHhhhcCCCc
Q 005182 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGV 225 (710)
Q Consensus 146 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 225 (710)
++ + . ..+++ .+...+. + +..-..|..+-|.||-=.-..+-...--+|+.-.|.+++++|.++
T Consensus 111 dd--~-------~--~~~~~---til~ay~--~--~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 DD--I-------H--DAVEK---TILSAYL--P--YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred cc--h-------h--hhHHH---HHHHHHh--c--cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 21 1 1 22222 2333333 2 112247889999999532111001123579999999999999999
Q ss_pred ceEEecCCC
Q 005182 226 PWVMCKQDD 234 (710)
Q Consensus 226 P~~~~~~~~ 234 (710)
|+.+.+++.
T Consensus 173 pV~T~dsw~ 181 (305)
T COG5309 173 PVTTVDSWN 181 (305)
T ss_pred ceeecccce
Confidence 999988763
No 152
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=49.40 E-value=25 Score=36.85 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=39.8
Q ss_pred chHHHHHHHHHcCCCEEEEeeeCCCCCCCC----cceecccchhHHHHHHHHHHcCCEEEeec-Ccc
Q 005182 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDRYDLVRFIKLVQQAGLYVHLRI-GPY 130 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~----G~fdf~g~~dl~~fi~la~~~GL~Vilr~-GPy 130 (710)
.+++.++.++++|..+|.+ |..+.... -.+... ...|+++.+.|+++|+.+.+.+ +|+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 5667889999999999966 22232111 112211 2478999999999999999997 443
No 153
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=48.50 E-value=38 Score=37.21 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=53.0
Q ss_pred cCeEEECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeee----CCCCCCC------Cccee--------cc
Q 005182 43 HKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPT------QGNYY--------FQ 104 (710)
Q Consensus 43 ~~~~~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp~------~G~fd--------f~ 104 (710)
-|+|+||--| ||+ +.+...+.|+.|-..++|+...++- |.+.-+. .|.+. |=
T Consensus 3 ~RG~mlD~aR--------~f~--~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~Y 72 (329)
T cd06568 3 YRGLMLDVAR--------HFF--TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYY 72 (329)
T ss_pred ccceeeeccC--------CCc--CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcC
Confidence 3566666544 433 7888999999999999999999874 5543221 22221 00
Q ss_pred cchhHHHHHHHHHHcCCEEEeec
Q 005182 105 DRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 105 g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
-..++.++++.|++.|+.||-.+
T Consensus 73 T~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 13599999999999999998764
No 154
>PLN02784 alpha-amylase
Probab=47.23 E-value=42 Score=41.44 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCc--cee-------cccchhHHHHHHHHHHcCCEEEeec
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYY-------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G--~fd-------f~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.+.+..++++|+++|-+.=+-....+ .| .+| |....+|..+|+.|+++||.||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788899999999998533222111 11 122 3345799999999999999999885
No 155
>PRK15492 triosephosphate isomerase; Provisional
Probab=47.10 E-value=40 Score=35.92 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=38.8
Q ss_pred HHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 73 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
.-.++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 86 Sa~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 86 SPLMLKEIGTQLVMI-----GHSERRHKFGET-DQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CHHHHHHcCCCEEEE-----CccccccccCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 345799999999999 455555555433 45677788999999999999987
No 156
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=46.89 E-value=52 Score=28.35 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=31.1
Q ss_pred CeEEEeeccceEEEEECCEEEEEEEcccCCCeEEEecceecCCCccE-EEEEEeecC
Q 005182 502 PLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNK-ISLLSTSVG 557 (710)
Q Consensus 502 ~~L~l~~~~d~~~VfVNG~~vGs~~g~~~~~~~~~~~~v~Lk~G~N~-L~ILven~G 557 (710)
..|........+.+.|||..+... + ... .+.|..|.|. |.|.|.+-.
T Consensus 27 v~v~a~~~~~~a~v~vng~~~~~~-~----~~~----~i~L~~G~n~~i~i~Vta~d 74 (88)
T PF12733_consen 27 VTVTATPEDSGATVTVNGVPVNSG-G----YSA----TIPLNEGENTVITITVTAED 74 (88)
T ss_pred EEEEEEECCCCEEEEEcCEEccCC-C----cce----eeEccCCCceEEEEEEEcCC
Confidence 455555567889999999876432 1 111 2347789998 999986544
No 157
>PLN02561 triosephosphate isomerase
Probab=46.85 E-value=40 Score=35.77 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 73 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
...++|++|++.|-+ -|..++..|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 80 S~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 445799999999999 455555455433 56778888999999999999997
No 158
>PLN02429 triosephosphate isomerase
Probab=46.73 E-value=36 Score=37.22 Aligned_cols=50 Identities=20% Similarity=0.110 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 73 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
..+++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 139 Sa~mLkd~Gv~~Vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 139 SVEQLKDLGCKWVIL-----GHSERRHVIGEK-DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred CHHHHHHcCCCEEEe-----CccccCCCCCcC-HHHHHHHHHHHHHCcCEEEEEcC
Confidence 345799999999999 454445455433 22333334449999999999997
No 159
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=46.73 E-value=25 Score=34.50 Aligned_cols=63 Identities=17% Similarity=0.103 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHHcCCCEEEEeeeC-CCCCCC--CcceecccchhHHHHHHHHHHcCCEEEeecCcc
Q 005182 67 PEMWPDLIQKAKDGGLDVIQTYVFW-NGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (710)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~tyv~W-n~hEp~--~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPy 130 (710)
.+..++.++.++++|+..|.+...+ ..+.+. +..++.- ...|+++.+.|+++|+.+.+.+-|+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL-AENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH-HHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH-HHHHHHHHhhhhhhcceEEEecccC
Confidence 3567888999999999999886542 112111 1112111 2478899999999999999999554
No 160
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=46.50 E-value=91 Score=34.49 Aligned_cols=74 Identities=15% Similarity=0.305 Sum_probs=52.4
Q ss_pred CeEEECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeee----CCCCCCC------Ccceeccc---chhHH
Q 005182 44 KAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPT------QGNYYFQD---RYDLV 110 (710)
Q Consensus 44 ~~~~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp~------~G~fdf~g---~~dl~ 110 (710)
|+|+||=-| || .+.+..++.|+.|-...+|+...++- |.+--+. .|.|.-.| ..++.
T Consensus 4 RG~mlDvaR--------~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~ 73 (348)
T cd06562 4 RGLLLDTSR--------HF--LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVK 73 (348)
T ss_pred cceeeeccc--------cC--CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHH
Confidence 556666444 44 36788999999999999999998764 5543221 23322111 34999
Q ss_pred HHHHHHHHcCCEEEeec
Q 005182 111 RFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 111 ~fi~la~~~GL~Vilr~ 127 (710)
.+++.|++.|+.||..+
T Consensus 74 eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 74 EIVEYARLRGIRVIPEI 90 (348)
T ss_pred HHHHHHHHcCCEEEEec
Confidence 99999999999998774
No 161
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=45.07 E-value=57 Score=39.10 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=54.1
Q ss_pred CccchHHHHHHHHHcCCCEEEEe-ee-----CC--CCCCCCcceec---------ccchhHHHHHHHHHHcCCEEEeecC
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTY-VF-----WN--GHEPTQGNYYF---------QDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~ty-v~-----Wn--~hEp~~G~fdf---------~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
.+.+|+ .++++|+++|-+- ++ |. .-.-.-|-||- ....|++++++.|+++||+||+..=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 455665 6899999999862 33 33 22222466663 3357999999999999999998742
Q ss_pred --------ccccceecCCCCCeec
Q 005182 129 --------PYVCAEWNYGGFPVWL 144 (710)
Q Consensus 129 --------Pyi~aEw~~GG~P~WL 144 (710)
|+.-|+.+.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 3777888888888887
No 162
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=44.63 E-value=67 Score=34.71 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=47.0
Q ss_pred CCccchHHHHHHHHHcCCCEEEEeee----CCCCCC----------------CCcceecccchhHHHHHHHHHHcCCEEE
Q 005182 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------TQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (710)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp----------------~~G~fdf~g~~dl~~fi~la~~~GL~Vi 124 (710)
.+.+..++.|+.|-..++|++..++- |.+--+ ..|.|.- .++.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 36788899999999999999999977 754321 1123333 499999999999999998
Q ss_pred eec
Q 005182 125 LRI 127 (710)
Q Consensus 125 lr~ 127 (710)
-.+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 764
No 163
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=44.61 E-value=45 Score=39.04 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=39.1
Q ss_pred CCCeEEEeeccceEEEEECCEEEEEEEcccCCCeEEEecceecCCCccEEEEEEeec
Q 005182 500 QDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSV 556 (710)
Q Consensus 500 ~~~~L~l~~~~d~~~VfVNG~~vGs~~g~~~~~~~~~~~~v~Lk~G~N~L~ILven~ 556 (710)
+.+.|-|.+++-.+.||+||+.|+........-.+.++. .-+|.|.|+|.-.+.
T Consensus 93 ~~~~l~ie~vdtia~v~~n~~~v~~s~n~f~~y~~~vt~---ii~~~n~i~~~f~ss 146 (867)
T KOG2230|consen 93 VGAFLEIESVDTIATVYVNGQKVLHSRNQFLPYHVNVTD---IIAGENDITIKFKSS 146 (867)
T ss_pred ccceEEEeecceeEEEEEccEEEeeccccceeEEEeEEE---EecCCcceEEEeehh
Confidence 347899999999999999999999877654333344432 233788888876654
No 164
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=44.48 E-value=25 Score=39.36 Aligned_cols=90 Identities=12% Similarity=0.152 Sum_probs=68.8
Q ss_pred cccceeEEEecCeEEECCEEeEEEEEEeeCCC-CCccchHHHHHHHHHc-CCCEEEEeeeCCCCCCCCcceecccchhHH
Q 005182 33 SFVKASVSYDHKAVIINGQKRILISGSIHYPR-STPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (710)
Q Consensus 33 ~~~~~~v~~d~~~~~idGkp~~i~sG~~Hy~r-~~~~~W~~~l~k~Ka~-G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~ 110 (710)
+..+..|-.=+-+|-+...+-...+=|+.|+- .|.+.||-+|..+.++ -=||+.+-|- |=|.|-=++|+-. .|.
T Consensus 147 A~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~ 222 (447)
T KOG0259|consen 147 ANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLK 222 (447)
T ss_pred cCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHH
Confidence 35566666666666666555555666666555 5788899999999987 6788888544 7777888889888 999
Q ss_pred HHHHHHHHcCCEEEee
Q 005182 111 RFIKLVQQAGLYVHLR 126 (710)
Q Consensus 111 ~fi~la~~~GL~Vilr 126 (710)
+++++|+++||.||..
T Consensus 223 kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 223 KIAETAKKLGIMVIAD 238 (447)
T ss_pred HHHHHHHHhCCeEEeh
Confidence 9999999999999865
No 165
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.13 E-value=42 Score=36.53 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=48.9
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCC--C---CCcceecccc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHE--P---TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hE--p---~~G~fdf~g~--~dl~~fi~la~~~GL~Vilr~GPyi~ 132 (710)
..+..++.++++++.||-+=.+.+=+.++. . .-|.|+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 456678999999999987655554433333 1 2356766543 28999999999999999999877774
No 166
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=44.07 E-value=1e+02 Score=32.23 Aligned_cols=96 Identities=8% Similarity=0.014 Sum_probs=54.7
Q ss_pred Ccceecc-cchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHh
Q 005182 98 QGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (710)
Q Consensus 98 ~G~fdf~-g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~ 176 (710)
.|...+. +..++..+++.|++.|++|++..|= |..+. ... + ..++. .-+++.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~~----~---~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FTA----A---LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---chh----h---hcCHH---HHHHHHHHHHHHHHH
Confidence 4666654 3457889999999999999999861 22111 100 0 12333 345688888888886
Q ss_pred ccccccCCCceEEeccccccCCccccCCCchHHHHHHHHHHhhhcC
Q 005182 177 EKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLN 222 (710)
Q Consensus 177 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 222 (710)
+++ =++.|+=|+.... ...-..+++.|++.+.+.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 654 2345666664320 1111234555555555444
No 167
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=44.04 E-value=49 Score=33.21 Aligned_cols=89 Identities=16% Similarity=0.261 Sum_probs=56.0
Q ss_pred EEEEeeCCCCC-----ccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecc--c-chhHHHHHHHHHHcCCEEEeec
Q 005182 56 ISGSIHYPRST-----PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--D-RYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 56 ~sG~~Hy~r~~-----~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~--g-~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.-|.+||++.. .++.+.-++.++..++.. ...|--.|..++.+.-+ - ...+.+|++..+++|.++++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 33999998753 445777788888765432 11233445433433211 1 1478899999999999999998
Q ss_pred Ccccc----cee---cCCCCCeecccC
Q 005182 128 GPYVC----AEW---NYGGFPVWLKYV 147 (710)
Q Consensus 128 GPyi~----aEw---~~GG~P~WL~~~ 147 (710)
+++-. +.. +....|.|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 88521 111 145789999874
No 168
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=43.53 E-value=32 Score=39.07 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCEEEE-eeeC---CCCCCCCcce-----ecccchhHHHHHHHHHHcCCEEEeec
Q 005182 72 DLIQKAKDGGLDVIQT-YVFW---NGHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 72 ~~l~k~Ka~G~N~V~t-yv~W---n~hEp~~G~f-----df~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
+.|.-+|.+|+++|-+ +++= ..|--..-.| .|....|++++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888999999999965 2331 1221110000 46778999999999999999999874
No 169
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=43.36 E-value=82 Score=33.88 Aligned_cols=115 Identities=21% Similarity=0.290 Sum_probs=69.0
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceeccc---chhHHHHHHHHHHcCCEEEeecCccccceecCCCC--
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD---RYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGF-- 140 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g---~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~-- 140 (710)
.-+.-++-+..+.++|+..|-+=.-|...+ ....+||+. ..||.++++-|++.|..|+|+. + |..||-
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhhH
Confidence 556678899999999999999977787622 235677763 5799999999999999998885 2 222221
Q ss_pred ------Ceeccc-----CCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceE
Q 005182 141 ------PVWLKY-----VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (710)
Q Consensus 141 ------P~WL~~-----~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII 188 (710)
-.+|.. ..++++=.-+. --+.+-+|+.+|++.-++++|+..=+|++.
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 111111 12233221111 124577889999999999998777777654
No 170
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=43.18 E-value=69 Score=26.82 Aligned_cols=31 Identities=16% Similarity=0.417 Sum_probs=24.4
Q ss_pred ccceEEEEECCEEEEEEEcccC--CCeEEEecc
Q 005182 509 AGHALQVFINGQLSGTVYGSLE--NPKLTFSKN 539 (710)
Q Consensus 509 ~~d~~~VfVNG~~vGs~~g~~~--~~~~~~~~~ 539 (710)
..|.+-||++++++|+.++... ..+|.|...
T Consensus 26 ~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~ 58 (63)
T PF11324_consen 26 KDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMA 58 (63)
T ss_pred CCCceEEEeCCEEEEEEEeecCCCcEEEEEEEE
Confidence 5899999999999999987643 356766643
No 171
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=42.94 E-value=1.7e+02 Score=32.67 Aligned_cols=86 Identities=15% Similarity=0.217 Sum_probs=51.1
Q ss_pred HHHcCCEEEeecCccccceecCCCCCeecccCCCe------EEec-CChhHHHHHHHHHHHHHHHHHhccccccCCCceE
Q 005182 116 VQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI------EFRT-DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (710)
Q Consensus 116 a~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~------~~R~-~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII 188 (710)
+-..|+.|+.-| |+ .|+|+...-.+ ++|- .-+.|-++..+|+. .++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~----~m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVL----EMK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHHHHHHHHHH----HHH------hCCCcee
Confidence 566799999887 54 89999864221 3432 23444444444433 233 4677999
Q ss_pred EeccccccCCccccCCC---chHHHHHHHHHHhhhcC
Q 005182 189 LSQIENEFGPVEWDIGA---PGKAYAKWAAQMAVGLN 222 (710)
Q Consensus 189 ~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 222 (710)
+..|.||..... .|.. ...+.++.+++-+....
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 999999986421 1221 23556666666665554
No 172
>PRK14567 triosephosphate isomerase; Provisional
Probab=42.59 E-value=52 Score=34.93 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=38.1
Q ss_pred HHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 74 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
-.++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999999 455555455433 45677888899999999999987
No 173
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=42.57 E-value=41 Score=36.94 Aligned_cols=68 Identities=6% Similarity=0.048 Sum_probs=51.2
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccch--hHHHHHHHHHHcCCEEEeecCccccce
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRY--DLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~--dl~~fi~la~~~GL~Vilr~GPyi~aE 134 (710)
..+.-++.++++++.||.+=.+.+=+.+ ....+.|+|+-.+ |..++++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 4556788999999999986666544332 2345667776432 889999999999999999998988743
No 174
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=42.22 E-value=1.2e+02 Score=33.37 Aligned_cols=72 Identities=10% Similarity=0.091 Sum_probs=55.3
Q ss_pred eeCCCC---CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccch--hHHHHHHHHHHcCCEEEeecCcccc
Q 005182 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRY--DLVRFIKLVQQAGLYVHLRIGPYVC 132 (710)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~--dl~~fi~la~~~GL~Vilr~GPyi~ 132 (710)
+|.+|. +.+..++.++++++.+|-+=.+++=+.++. .-+.|.|+..+ |..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 566788999999999988666665555554 34677776543 7899999999999999998888887
No 175
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=41.23 E-value=45 Score=36.32 Aligned_cols=72 Identities=7% Similarity=0.109 Sum_probs=52.3
Q ss_pred eeCCCC---CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 005182 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (710)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~--~dl~~fi~la~~~GL~Vilr~GPyi~ 132 (710)
+|..|. ..+..++.++++++.+|-.=.+.+=+.+.. ..+.|+|+.. -|..+|++..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 344554 566678999999999988655554432222 3466777643 38999999999999999999888875
No 176
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.21 E-value=59 Score=35.39 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHcCCCEEEEeeeCCCCCC---CCcceecccc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 005182 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP---TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (710)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp---~~G~fdf~g~--~dl~~fi~la~~~GL~Vilr~GPyi~ 132 (710)
.+.-++.++++++.||-+=.+.+=+.+..- ....|+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 345678899999999987666554322221 1234666533 38999999999999999999888874
No 177
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=41.07 E-value=42 Score=35.21 Aligned_cols=60 Identities=18% Similarity=0.047 Sum_probs=38.9
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCC-cceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~-G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
+.+++.|+.++++|++.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4468889999999999998631100011111 01110 124688899999999999999983
No 178
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=40.54 E-value=1.1e+02 Score=28.39 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=39.7
Q ss_pred eEEEEEEeecCCCcccccCCCCCeEEEeeccceEEEEECCEEEEEEEcccCCCeEEEecceecCCC-ccEEEEEEe
Q 005182 480 YLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPG-VNKISLLST 554 (710)
Q Consensus 480 ylwYrt~~~~~~~~~~~~~g~~~~L~l~~~~d~~~VfVNG~~vGs~~g~~~~~~~~~~~~v~Lk~G-~N~L~ILve 554 (710)
.+-+++.|+.+.+.. -++.+ ...|.+.+||||+.|-...+..... ......+.|.+| .+.|.|.-.
T Consensus 45 ~~~~~g~i~~~~~G~-------y~f~~-~~~~~~~l~Idg~~vid~~~~~~~~-~~~~~~v~l~~g~~~~i~v~y~ 111 (136)
T smart00758 45 SVRWTGYLKPPEDGE-------YTFSI-TSDDGARLWIDGKLVIDNWGKHEAR-PSTSSTLYLLAGGTYPIRIEYF 111 (136)
T ss_pred EEEEEEEEECCCCcc-------EEEEE-EcCCcEEEEECCcEEEcCCccCCCc-cccceeEEEeCCcEEEEEEEEE
Confidence 367788888765542 35666 4578899999999987644322100 111123456666 567766554
No 179
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=40.39 E-value=14 Score=31.93 Aligned_cols=39 Identities=23% Similarity=0.520 Sum_probs=28.1
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCC
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGL 121 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL 121 (710)
....|-.-+|.+-. .||.|-.|||. +|++||++|-|--+
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTpv 58 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTPV 58 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-TT
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCCe
Confidence 34568888877754 58999999999 99999999987443
No 180
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=40.38 E-value=46 Score=35.00 Aligned_cols=48 Identities=25% Similarity=0.464 Sum_probs=39.0
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEE-eecCccccc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 133 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vi-lr~GPyi~a 133 (710)
+.-.+.++++|+.|+ -|+.+| +|.+ +.|++|++.|-..| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 344678999999999 677744 7777 77999999999965 999999875
No 181
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.24 E-value=1e+02 Score=33.64 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=46.4
Q ss_pred CCccchHHHHHHHHHcCCCEEEEee----eCCCCC---CC---Cc----ceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 65 STPEMWPDLIQKAKDGGLDVIQTYV----FWNGHE---PT---QG----NYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~tyv----~Wn~hE---p~---~G----~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.+.+..++.|+.|...++|+...++ -|.+-- |+ .| .|. ..|+.++++.|++.|+.||-.+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEee
Confidence 4688899999999999999999987 365321 11 22 232 3499999999999999998764
No 182
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=39.77 E-value=43 Score=34.91 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=39.4
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
+..++.++.++++|+.+|.+...+.--...+.+..-.-...|.++.++|+++|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 446888999999999999874322111111111111112467888899999999999997
No 183
>PRK09989 hypothetical protein; Provisional
Probab=39.64 E-value=53 Score=34.20 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=34.1
Q ss_pred chHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEe
Q 005182 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vil 125 (710)
..++.|++++++|++.|++..+|. .+.+++-++.+++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 478999999999999999943321 2356788889999999864
No 184
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=39.48 E-value=46 Score=40.30 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=41.3
Q ss_pred HHHHHHHcCCCEEEE-eeeCCCCCCCC---c-ceec----------------cc-----chhHHHHHHHHHHcCCEEEee
Q 005182 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ---G-NYYF----------------QD-----RYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 73 ~l~k~Ka~G~N~V~t-yv~Wn~hEp~~---G-~fdf----------------~g-----~~dl~~fi~la~~~GL~Vilr 126 (710)
.|.-+|++|+++|+. +|+.-..|+.. | .|+| +. .+.|+.+|+.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 499999999999997 67755555543 2 1222 22 258899999999999999998
Q ss_pred c
Q 005182 127 I 127 (710)
Q Consensus 127 ~ 127 (710)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 5
No 185
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=38.93 E-value=45 Score=37.72 Aligned_cols=68 Identities=15% Similarity=0.326 Sum_probs=46.3
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccc--hhHHHHHHHHHHcCCEEEeecCccccce
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~--~dl~~fi~la~~~GL~Vilr~GPyi~aE 134 (710)
..+...+.++.+++.|+-.=.+.+-..+.. ..+.|.|+.. -|..++++.+++.|++|++..-|+|+-+
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 456678999999999998776665533332 4446665543 2899999999999999999998877544
No 186
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=38.03 E-value=46 Score=34.87 Aligned_cols=49 Identities=27% Similarity=0.411 Sum_probs=39.4
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEE-eecCccccce
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAE 134 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vi-lr~GPyi~aE 134 (710)
+.-.+.++++|+.|+- |+. +.+|.+ +.++.|++.|-..| |-+|||..+-
T Consensus 110 ~~l~~~i~~l~~~gI~-VSL-----FiDPd~------------~qi~~A~~~GAd~VELhTG~Ya~a~ 159 (234)
T cd00003 110 EKLKPIIERLKDAGIR-VSL-----FIDPDP------------EQIEAAKEVGADRVELHTGPYANAY 159 (234)
T ss_pred HHHHHHHHHHHHCCCE-EEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcCC
Confidence 4457789999999994 777 578877 67999999999966 9999998643
No 187
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=37.89 E-value=1.2e+02 Score=36.05 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=34.9
Q ss_pred cceEEEEECCEEEEEEEccc--C-CCeEEEecceecCCCccEEEEEEeecC
Q 005182 510 GHALQVFINGQLSGTVYGSL--E-NPKLTFSKNVKLRPGVNKISLLSTSVG 557 (710)
Q Consensus 510 ~d~~~VfVNG~~vGs~~g~~--~-~~~~~~~~~v~Lk~G~N~L~ILven~G 557 (710)
.....|+|||+.+|+..=.. . ...++++.+..|..|.|+|.|.+...-
T Consensus 62 ~S~L~V~lNg~~v~s~~l~~~~~~~~~~~i~Ip~~l~~g~N~l~~~~~~~~ 112 (605)
T PF03170_consen 62 RSQLTVSLNGQPVGSIPLDAESAQPQTVTIPIPPALIKGFNRLTFEFIGHY 112 (605)
T ss_pred cceEEEEECCEEeEEEecCcCCCCceEEEEecChhhcCCceEEEEEEEecc
Confidence 35799999999999985332 2 335666666568889999998876554
No 188
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=36.93 E-value=1.5e+02 Score=33.02 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=59.8
Q ss_pred cccccccceeEEEecCeEEECCEEeEEEEEEeeCCCC-CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceeccc--
Q 005182 29 SWEISFVKASVSYDHKAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD-- 105 (710)
Q Consensus 29 ~~~~~~~~~~v~~d~~~~~idGkp~~i~sG~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g-- 105 (710)
+.+.......|.+ ..+.+.|...+++.|.. -+ ..+.-.+.-+.+|+.|+..++-..|= |+.--|.|.|
T Consensus 97 s~~~~~~~~~~~~--~~~~~g~~~~~~iaGpc---~iE~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~ 167 (360)
T PRK12595 97 SRKKKPEDTIVDV--KGEVIGDGNQSFIFGPC---SVESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLG 167 (360)
T ss_pred hCccCCCCCEEEE--CCEEecCCCeeeEEecc---cccCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCC
Confidence 3444444555666 33666654444455651 11 35556677888899999998875443 4444466765
Q ss_pred chhHHHHHHHHHHcCCEEEeec
Q 005182 106 RYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 106 ~~dl~~fi~la~~~GL~Vilr~ 127 (710)
...+..+.+.|++.||.++-.|
T Consensus 168 ~e~l~~L~~~~~~~Gl~~~t~v 189 (360)
T PRK12595 168 VEGLKILKQVADEYGLAVISEI 189 (360)
T ss_pred HHHHHHHHHHHHHcCCCEEEee
Confidence 4688899999999999998886
No 189
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=36.62 E-value=78 Score=34.74 Aligned_cols=118 Identities=19% Similarity=0.392 Sum_probs=73.0
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEE-EeecCccccceecCCCCCeec
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV-HLRIGPYVCAEWNYGGFPVWL 144 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~V-ilr~GPyi~aEw~~GG~P~WL 144 (710)
..-.|+..-.-.+++||-+|++|-+|+..+..= |++.|+.-.+.+--+. |+.. .||-=..
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~---------d~e~~Lsdl~~APe~si~iLh---aCAhNPT------- 191 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKCV---------DLEGFLSDLESAPEGSIIILH---ACAHNPT------- 191 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCcee---------cHHHHHHHHhhCCCCcEEeee---ccccCCC-------
Confidence 456799999999999999999999999876443 6778888887765553 3332 2665322
Q ss_pred ccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCCchHHHHHHHHHHhhhcCCC
Q 005182 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTG 224 (710)
Q Consensus 145 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~ 224 (710)
|| || .++=+..|++.|++..++ |.. +=-|..+ ..|+.++ -.|..+.+.+.|
T Consensus 192 ----Gm-----DP-----T~EQW~qia~vik~k~lf-----~fF----DiAYQGf--ASGD~~~--DawAiR~fV~~g-- 242 (410)
T KOG1412|consen 192 ----GM-----DP-----TREQWKQIADVIKSKNLF-----PFF----DIAYQGF--ASGDLDA--DAWAIRYFVEQG-- 242 (410)
T ss_pred ----CC-----CC-----CHHHHHHHHHHHHhcCce-----eee----ehhhccc--ccCCccc--cHHHHHHHHhcC--
Confidence 22 22 233345677778765443 321 1123222 2244333 367777788887
Q ss_pred cceEEec
Q 005182 225 VPWVMCK 231 (710)
Q Consensus 225 vP~~~~~ 231 (710)
.++|.|+
T Consensus 243 ~e~fv~Q 249 (410)
T KOG1412|consen 243 FELFVCQ 249 (410)
T ss_pred CeEEEEh
Confidence 4567665
No 190
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=36.37 E-value=50 Score=34.15 Aligned_cols=59 Identities=12% Similarity=-0.061 Sum_probs=39.1
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCC-CCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHE-PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hE-p~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
+.+++.++.++++|+.+|.+..-...-+ +.+ +..-.-...|.++.+.|++.|+.+.+.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~-~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPE-EARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHH-HHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 5678889999999999998632211000 011 1001112468888999999999999997
No 191
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=36.32 E-value=2.2e+02 Score=29.37 Aligned_cols=90 Identities=8% Similarity=0.087 Sum_probs=64.5
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecc-cchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeec
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 144 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~-g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 144 (710)
.+.+++..++.++++|+..+.+|..... ....|..+ |..|=..-+++|+++|+ -+|- |-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~gs-----------~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPGT-----------IIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCCC-----------EEEE
Confidence 5788999999999999999999988765 22223332 67899999999999998 3333 3333
Q ss_pred ccCCCeEEecCChhHHHHHHHHHHHHHHHHHhc
Q 005182 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAE 177 (710)
Q Consensus 145 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~ 177 (710)
.-+.+. .+..+...+..|++.+.+.|...
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 222221 33447788999999999888843
No 192
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.84 E-value=75 Score=35.02 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=50.5
Q ss_pred eeCCCC---CccchHHHHHHHHHcCCCEEEEee----------eCCCCCC---------CCcceeccc-c--hhHHHHHH
Q 005182 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYV----------FWNGHEP---------TQGNYYFQD-R--YDLVRFIK 114 (710)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv----------~Wn~hEp---------~~G~fdf~g-~--~dl~~fi~ 114 (710)
+|..|. ..+.-++.++++++.||.+=.+++ .|+...- .-+.++|.. . -|.+++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455554 455678899999999998666544 3443221 113344432 1 28999999
Q ss_pred HHHHcCCEEEeecCcccc
Q 005182 115 LVQQAGLYVHLRIGPYVC 132 (710)
Q Consensus 115 la~~~GL~Vilr~GPyi~ 132 (710)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888885
No 193
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=35.74 E-value=66 Score=36.39 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=44.0
Q ss_pred CCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEE-EeecC
Q 005182 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV-HLRIG 128 (710)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~V-ilr~G 128 (710)
...+.-+..|+.+|++|+|+|-+++.=.---+.+-.|.= -..|-+.+++++++.|..+ +|..|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG 253 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG 253 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC
Confidence 355667889999999999999996653322222222221 1357777889999999985 78875
No 194
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=35.67 E-value=1.1e+02 Score=36.63 Aligned_cols=109 Identities=13% Similarity=0.146 Sum_probs=73.7
Q ss_pred EEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCcc
Q 005182 51 QKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (710)
Q Consensus 51 kp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPy 130 (710)
++-+.+++..|+.+.+.+.=-++|.+-.++|.+-+-|-.+ ||-+ .+.+|++.|++.++.||..+-|-
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~----------fd~~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPV----------YDEE---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEeccc----------CCHH---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4557889999877665554455666667899999999444 4444 78899999998888888887763
Q ss_pred c--------cceecCCCCCeecccC-CCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 131 V--------CAEWNYGGFPVWLKYV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 131 i--------~aEw~~GG~P~WL~~~-p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
. ..+|..-=+|.|+.+. .. .. +....+++--++..++++.|+
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 3 2335555578888762 11 11 223566667777777777766
No 195
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=35.54 E-value=64 Score=35.40 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=51.9
Q ss_pred eeCCCC---CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccc--hhHHHHHHHHHHcCCEEEeecCccccc
Q 005182 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (710)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~--~dl~~fi~la~~~GL~Vilr~GPyi~a 133 (710)
+|..|. +.+..++.++++++.||-+=.+.+=+.+.. .-+.|+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 355553 556678999999999988655444333332 3455766543 378999999999999999998888753
No 196
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=35.28 E-value=99 Score=34.47 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=36.0
Q ss_pred chHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.|...++.+++.|++.|.-+...-.-....+.. -...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~------~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGKI------VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhcccccccccc------CCHHHHHHHHHcCCEEEEEE
Confidence 488889999999999877643222211111221 23588999999999998775
No 197
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=35.18 E-value=1.1e+02 Score=35.05 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=44.6
Q ss_pred CCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEee
Q 005182 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr 126 (710)
+.+..+..++.++..++.|.++=-+++. |-|.|.=-.|+=+ .+.+++++|+++++.||..
T Consensus 171 ~~~~~~~le~~~~~~~~~~~~~k~v~l~-nP~NPTG~~~s~e---~l~~ll~~a~~~~~~iI~D 230 (468)
T PLN02450 171 FQITESALEEAYQQAQKLNLKVKGVLIT-NPSNPLGTTTTRT---ELNLLVDFITAKNIHLISD 230 (468)
T ss_pred CcCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCCcccCHH---HHHHHHHHHHHCCcEEEEE
Confidence 3445566666666666667776556777 7788886666666 8999999999999998755
No 198
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=34.90 E-value=4.4e+02 Score=27.15 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEE
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vi 124 (710)
++.++.|+++|++++.+- |=|| |||. ..-|.+.++.+++.|+..+
T Consensus 63 ~~~~~~l~~~G~d~~~la---NNH~-----fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 63 PENAAALKAAGFDVVSLA---NNHS-----LDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHHhCCCEEEec---cCcc-----cccc-hHHHHHHHHHHHHCCCCEe
Confidence 456889999999999981 1343 4443 3467788888888888754
No 199
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.53 E-value=2.4e+02 Score=31.52 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=63.8
Q ss_pred hhcccccc-cceeEEEec--CeEEEC-CEEeEEEEEEeeCCCC-CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcce
Q 005182 27 FCSWEISF-VKASVSYDH--KAVIIN-GQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY 101 (710)
Q Consensus 27 ~~~~~~~~-~~~~v~~d~--~~~~id-Gkp~~i~sG~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~f 101 (710)
|.+.++.. ....+.++. ..+.+. ++|++++.| +--+ .++.-.+.-+.+|+.|...++-+.|= |+---|
T Consensus 72 laSre~~~~~~~~v~v~~~~~~v~iGg~~~l~vIAG---PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~k----pRtsp~ 144 (352)
T PRK13396 72 RASREYRHGEASEVVVPTPNGPVPFGENHPVVVVAG---PCSVENEEMIVETAKRVKAAGAKFLRGGAYK----PRTSPY 144 (352)
T ss_pred hhhhhcCCcCCceEEEecCcCCeEecCCCeEEEEEe---CCcccCHHHHHHHHHHHHHcCCCEEEeeeec----CCCCCc
Confidence 44444443 445565653 345565 467888888 3333 56667788889999999999975543 444446
Q ss_pred eccc--chhHHHHHHHHHHcCCEEEeec
Q 005182 102 YFQD--RYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 102 df~g--~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.|.| ..-|+.+-+.+++.||.++-.+
T Consensus 145 sf~G~g~~gl~~L~~~~~e~Gl~~~tev 172 (352)
T PRK13396 145 AFQGHGESALELLAAAREATGLGIITEV 172 (352)
T ss_pred ccCCchHHHHHHHHHHHHHcCCcEEEee
Confidence 7765 4567777788899999998776
No 200
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=34.35 E-value=93 Score=35.79 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=45.4
Q ss_pred eCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 61 HYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 61 Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
-|.+.|.+.-++.++++.+.|++.|+++++-|.. +++...++.|+++|+.|.+.+
T Consensus 89 G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 89 GYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 4666677778889999999999999998876653 268899999999999886654
No 201
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=33.98 E-value=1.1e+02 Score=32.47 Aligned_cols=85 Identities=22% Similarity=0.251 Sum_probs=56.9
Q ss_pred ccceeEEEecCeEEECCEEeEEEEEEeeCCCC-CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecc--cchhHH
Q 005182 34 FVKASVSYDHKAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DRYDLV 110 (710)
Q Consensus 34 ~~~~~v~~d~~~~~idGkp~~i~sG~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~--g~~dl~ 110 (710)
.....|.+. .+.+.+..++++.| +-.+ ..+.-.+.-+.+|+.|....+.|+|=+-..| +.|. |..-|+
T Consensus 9 ~~~s~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~ 79 (260)
T TIGR01361 9 PEKTVVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLK 79 (260)
T ss_pred CCCCEEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHH
Confidence 334556663 35566544566777 3333 4555667788888999988887766533322 4455 467888
Q ss_pred HHHHHHHHcCCEEEeec
Q 005182 111 RFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 111 ~fi~la~~~GL~Vilr~ 127 (710)
.+-+.|++.||.++..|
T Consensus 80 ~l~~~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 80 LLRRAADEHGLPVVTEV 96 (260)
T ss_pred HHHHHHHHhCCCEEEee
Confidence 89999999999998876
No 202
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.14 E-value=89 Score=33.59 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=47.9
Q ss_pred CccchHHHHHHHHHcCCCEEEEeee--CCCCC------CCCcceecccc--hhHHHHHHHHHHcCCEEEeecCccc
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVF--WNGHE------PTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYV 131 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~--Wn~hE------p~~G~fdf~g~--~dl~~fi~la~~~GL~Vilr~GPyi 131 (710)
+.+.-++.++++++.||-+=.+++= |.... -.-+.|+|+-. -|..++++..++.|++|++..=|+|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5666789999999999987666553 43221 12356777643 3899999999999999998875543
No 203
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=33.04 E-value=1.7e+02 Score=33.44 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=46.8
Q ss_pred CCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
+.+..+..++.++.+++-|.++=-+++. |-|-|.=-.|+=+ .+++++++|+++++++|..=
T Consensus 180 f~~~~~~le~a~~~a~~~~~~vk~lll~-nP~NPtG~~~s~e---~l~~l~~~~~~~~i~lI~DE 240 (447)
T PLN02607 180 FQVTPQALEAAYQEAEAANIRVRGVLIT-NPSNPLGATVQRS---VLEDILDFVVRKNIHLVSDE 240 (447)
T ss_pred CcCCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcCcccCHH---HHHHHHHHHHHCCCEEEEec
Confidence 4567777888888888889886555654 6677775556555 89999999999999988653
No 204
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=32.65 E-value=91 Score=33.61 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=43.0
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCC--CCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp--~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.++..++.++.+++.|.+.|-+|.-...-.+ .++.-.++ ...+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 3677889999999999999999875422111 11211122 2378899999999999887764
No 205
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=32.59 E-value=45 Score=40.17 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCEEEEe-e--------eCCCCCCC---C-cceecc----cchhHHHHHHHHHHcCCEEEeec
Q 005182 71 PDLIQKAKDGGLDVIQTY-V--------FWNGHEPT---Q-GNYYFQ----DRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~ty-v--------~Wn~hEp~---~-G~fdf~----g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
+++|..+|.+|+|+|+.= | .|.++--. | +.|--. -..++.++++.|++.||.|+|..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 455889999999999962 2 24433210 0 111100 02489999999999999999986
No 206
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=32.45 E-value=64 Score=33.88 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=37.4
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEE-eecCccccc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 133 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vi-lr~GPyi~a 133 (710)
+.-.+.++++|+.|+ -|+. +.+|.+ ..|++|++.|-..| |-+|||..+
T Consensus 110 ~~l~~~i~~l~~~gI-~VSL-----FiDP~~------------~qi~~A~~~GAd~VELhTG~YA~a 158 (237)
T TIGR00559 110 DKLCELVKRFHAAGI-EVSL-----FIDADK------------DQISAAAEVGADRIEIHTGPYANA 158 (237)
T ss_pred HHHHHHHHHHHHCCC-EEEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 445678889999998 4555 377777 67899999999865 999999864
No 207
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.31 E-value=87 Score=24.67 Aligned_cols=55 Identities=16% Similarity=0.376 Sum_probs=39.2
Q ss_pred ccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEE
Q 005182 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (710)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~V 123 (710)
|..-.+.+.-+.+.|+|.+.++. +...+.....+.|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44567888899999999998876 3333234455555433 4889999999999765
No 208
>PRK09267 flavodoxin FldA; Validated
Probab=31.97 E-value=3.4e+02 Score=26.19 Aligned_cols=74 Identities=9% Similarity=0.126 Sum_probs=49.8
Q ss_pred ECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEE
Q 005182 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (710)
Q Consensus 48 idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vi 124 (710)
++.-..++++...|....++..|.+-+++++...++-..+.+| .......-.-.| ..-+..+.+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaif-g~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALF-GLGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEE-ecCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 4455678999999987888889999999888887877777777 322111100112 2346677788889897654
No 209
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=31.37 E-value=1.6e+02 Score=29.50 Aligned_cols=50 Identities=14% Similarity=0.003 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
..-+.+|+.+|+.|+++|-| +.|..| ++.=+ +..+.+.++++||.++--|
T Consensus 58 RdL~~DL~~Lk~~G~~~Vvt-----l~~~~E--L~~l~---Vp~L~~~~~~~Gi~~~h~P 107 (168)
T PF05706_consen 58 RDLQADLERLKDWGAQDVVT-----LLTDHE--LARLG---VPDLGEAAQARGIAWHHLP 107 (168)
T ss_dssp B-HHHHHHHHHHTT--EEEE------S-HHH--HHHTT----TTHHHHHHHTT-EEEE--
T ss_pred chHHHHHHHHHHCCCCEEEE-----eCcHHH--HHHcC---CccHHHHHHHcCCEEEecC
Confidence 34477899999999999987 555433 33332 3456899999999876444
No 210
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.28 E-value=1e+02 Score=35.39 Aligned_cols=73 Identities=16% Similarity=0.300 Sum_probs=52.2
Q ss_pred ecCeEEECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeee----CCCCC---C------------------
Q 005182 42 DHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVF----WNGHE---P------------------ 96 (710)
Q Consensus 42 d~~~~~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hE---p------------------ 96 (710)
.-|+|+||=-| |++ +.+.-++.|+.|-...+|+...++- |-+-- |
T Consensus 6 ~~RGlmLDvaR--------~f~--~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~ 75 (445)
T cd06569 6 EYRGMHLDVAR--------NFH--SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTC 75 (445)
T ss_pred cccceeeeccC--------CCC--CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccc
Confidence 34666666544 443 7888999999999999999999873 43211 0
Q ss_pred --------------CCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 97 --------------TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 97 --------------~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
..|.|. ..++..+++.|++.|+.||-.+
T Consensus 76 ~~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 76 LLPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred cccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEcc
Confidence 011122 3599999999999999998664
No 211
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=31.14 E-value=75 Score=33.72 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCC---CCCCCcceecccchhHHHHHHHHHHcCCEEEee
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNG---HEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~---hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr 126 (710)
++.+++||++|++.|...+- .. +..--+..+++ +..+.++.|+++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 67899999999999988543 11 11111122333 5567789999999986433
No 212
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=31.12 E-value=5.7e+02 Score=26.17 Aligned_cols=126 Identities=13% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCc-ceecc-cchhHHHHHHHHHHcCCEEEeec------CccccceecC-----
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQG-NYYFQ-DRYDLVRFIKLVQQAGLYVHLRI------GPYVCAEWNY----- 137 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G-~fdf~-g~~dl~~fi~la~~~GL~Vilr~------GPyi~aEw~~----- 137 (710)
++.++.|+++|++++.+ | .-.|+ |..-|.+.++..+++|+..+--- .||..=|.+.
T Consensus 67 ~~~~~~L~~~G~d~~tl-----------aNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ 135 (239)
T cd07381 67 PEVADALKAAGFDVVSL-----------ANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAF 135 (239)
T ss_pred HHHHHHHHHhCCCEEEc-----------ccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEE
Q ss_pred -----CCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCCchHHHHH
Q 005182 138 -----GGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAK 212 (710)
Q Consensus 138 -----GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~ 212 (710)
...+.+........+...++. +.+++.++++-+. + ++ -|++.+...||... -..+.+
T Consensus 136 ig~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~lr~~-~--D~------vIv~~H~G~e~~~~-------p~~~~~ 197 (239)
T cd07381 136 LAYTYGTNGIPLAAGARPGGVNPLDL--ERIAADIAEAKKK-A--DI------VIVSLHWGVEYSYY-------PTPEQR 197 (239)
T ss_pred EEEECCCCCCcCcccCCccccCccCH--HHHHHHHHHHhhc-C--CE------EEEEecCcccCCCC-------CCHHHH
Q ss_pred HHHHHhhhcCCCc
Q 005182 213 WAAQMAVGLNTGV 225 (710)
Q Consensus 213 ~l~~~~~~~g~~v 225 (710)
.+++.+...|+++
T Consensus 198 ~la~~l~~~G~D~ 210 (239)
T cd07381 198 ELARALIDAGADL 210 (239)
T ss_pred HHHHHHHHCCCCE
No 213
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=31.07 E-value=1.1e+02 Score=33.02 Aligned_cols=87 Identities=18% Similarity=0.272 Sum_probs=56.3
Q ss_pred HHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCE--EEeecCc--------cccceecCCCCCe
Q 005182 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY--VHLRIGP--------YVCAEWNYGGFPV 142 (710)
Q Consensus 73 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~--Vilr~GP--------yi~aEw~~GG~P~ 142 (710)
.|++-.++|.+.+-|- =.||.+ .+.+|++.|++.|+. |+..+-| ++ ++...-++|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ----------~~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQ----------FFFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeecc----------cccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 4555556888877772 245555 889999999999954 5655555 23 5667778999
Q ss_pred ecccC-CCeEEecCC-hhHHHHHHHHHHHHHHHHHh
Q 005182 143 WLKYV-PGIEFRTDN-GPFKAAMHKFTEKIVSMMKA 176 (710)
Q Consensus 143 WL~~~-p~~~~R~~d-~~y~~~~~~~~~~l~~~i~~ 176 (710)
|+.+. .. . .+| ...+++--++..++++.|.+
T Consensus 234 ~l~~~l~~--~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 234 WMAKMFDG--L-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99762 11 1 133 33455556677777777663
No 214
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=30.93 E-value=35 Score=37.18 Aligned_cols=61 Identities=21% Similarity=0.336 Sum_probs=41.1
Q ss_pred EeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEE-eec
Q 005182 52 KRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRI 127 (710)
Q Consensus 52 p~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vi-lr~ 127 (710)
..++++-+..--+. |+.|++.+..+-++|+|.|+- +|+.-. |..+|.++|+++|..++ +|.
T Consensus 34 ~~liiGiA~~GG~l-p~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 34 DTLIIGIAPAGGRL-PPSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp SEEEE---STTHCC-HCCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS
T ss_pred CEEEEecCcCCCcC-CHHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccC
Confidence 34455555444444 488999999999999999997 888554 66799999999999876 554
No 215
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=30.92 E-value=1.5e+02 Score=31.71 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=47.3
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceeccc--chhHHHHHHHHHHcCCEEEeec
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g--~~dl~~fi~la~~~GL~Vilr~ 127 (710)
..|+-...-+.+|++|.+.++- ...-|+---|+|.| ..-|..+-+.++++||.|+-+.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRG----gafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEv 116 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRG----GAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEV 116 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccC----CcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEe
Confidence 4556677788999999999998 55567777799996 4778888888899999998886
No 216
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.90 E-value=90 Score=32.61 Aligned_cols=48 Identities=21% Similarity=0.370 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCc
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GP 129 (710)
++.+++++++|.+.|.+. --|-+ . ++ ++.++++.|+++||.+++-..|
T Consensus 91 ~~~i~~~~~~Gadgvii~-----dlp~e--~-~~---~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 91 DNFLNMARDVGADGVLFP-----DLLID--Y-PD---DLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred HHHHHHHHHcCCCEEEEC-----CCCCC--c-HH---HHHHHHHHHHHcCCCEEEEECC
Confidence 345778999999999982 01111 0 11 6789999999999998877644
No 217
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=30.67 E-value=3.8e+02 Score=30.20 Aligned_cols=161 Identities=12% Similarity=0.157 Sum_probs=85.3
Q ss_pred HHHHHHHHhhcccccccceeEEEecCeEEECCEEeEEEEEEeeCCCCCccchHHHHHHHHHc-CC-CEEEEeeeCCCCCC
Q 005182 19 VLMLVLLSFCSWEISFVKASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDG-GL-DVIQTYVFWNGHEP 96 (710)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~-G~-N~V~tyv~Wn~hEp 96 (710)
-|.-.-+++-+|.+...+.+|.. |---| -+| ++++..+++.+++.+ ++ -.|...++|
T Consensus 7 ~~~~~~~~~~~w~~~~~~tRf~~----f~~~g-----------~~r-~~~e~~~d~~~v~~L~~~~~~v~lH~~~----- 65 (378)
T TIGR02635 7 KLKALKIETPSWAYGNSGTRFKV----FHQEG-----------AAR-NVFEKIEDAALVHRLTGICPTVALHIPW----- 65 (378)
T ss_pred HHHhcEeeccccccCCCCccccc----CCCCC-----------CCC-CHHHHHHHHHHHHhhcCCCCceeeccCC-----
Confidence 34445567777777777776611 11011 122 234445556666555 33 456665556
Q ss_pred CCcceecccchhHHHHHHHHHHcCCEEE-eecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 97 TQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 97 ~~G~fdf~g~~dl~~fi~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
+.. .|+.++.++++++||.|. +-|+-+-...+.. + .+-..|+..++..-++.++.+++-+
T Consensus 66 -d~~------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~~~-----------G-SLt~pD~~vR~~AIe~~k~~idiA~ 126 (378)
T TIGR02635 66 -DRV------EDYEELARYAEELGLKIGAINPNLFQDDDYKF-----------G-SLTHPDKRIRRKAIDHLLECVDIAK 126 (378)
T ss_pred -ccc------cCHHHHHHHHHHcCCceeeeeCCccCCcccCC-----------C-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 222 267799999999999986 7775221111111 2 3556788888777777777666665
Q ss_pred hccccccCCCceE-Eeccc--cccCCccccCCCchHHHHHHHHHHhhhcCCCcce
Q 005182 176 AEKLFQTQGGPII-LSQIE--NEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPW 227 (710)
Q Consensus 176 ~~~~~~~~gGpII-~~QiE--NEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~ 227 (710)
.+ |.+.| .| +- -+|.... ++...-..+.+.|++++....-++.+
T Consensus 127 --eL----Ga~~I~iW-~~DG~~~~g~~-~~~~a~~rl~esL~eI~~~~~~~v~~ 173 (378)
T TIGR02635 127 --KT----GSKDISLW-LADGTNYPGQD-DFRSRKDRLEESLAEVYEHLGADMRL 173 (378)
T ss_pred --Hh----CCCeEEEe-cCCcCcCCccc-CHHHHHHHHHHHHHHHHHhCcCCCEE
Confidence 22 34333 44 21 1222110 11111245667777777554345544
No 218
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=30.58 E-value=1.7e+02 Score=28.00 Aligned_cols=89 Identities=12% Similarity=0.192 Sum_probs=46.6
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecc---cchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCe
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~---g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~ 142 (710)
.+.+....++.|+++|+..+-+|.....+ ...|... |..|=..-+..|+++|+. . |-|-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~---~~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~I 97 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRE---TSDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPI 97 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-----------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEeccccc---ccccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEE
Confidence 46788999999999999999998776221 1222222 668889999999999983 2 3343
Q ss_pred ecccCCCeEEecCChhHHHHHHHHHHHHHHHHHh
Q 005182 143 WLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (710)
Q Consensus 143 WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~ 176 (710)
++--+-+ ..+..+.+.+..|++.+.+.|..
T Consensus 98 YfavD~d----~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 98 YFAVDYD----ATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp EEE--TS-----B-HH-------HHHHHHHHHGG
T ss_pred EEEeecC----CCchhhhhHHHHHHHHHHHHHhh
Confidence 4432212 25677788888899999888884
No 219
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=30.28 E-value=79 Score=33.29 Aligned_cols=55 Identities=22% Similarity=0.148 Sum_probs=36.9
Q ss_pred chHHHHHHHHHcCCCEEEEeeeCCCCCCCCcce-e--cc-cchhHHHHHHHHHHcCCEEEeec
Q 005182 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-Y--FQ-DRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~f-d--f~-g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
..++.++.++++|+++|.+.- .+...+.- + +. -...|.++.++|+++|+.+.|.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAG----YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecC----cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 467889999999999997621 11111100 0 11 02467788999999999999996
No 220
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=29.99 E-value=1e+02 Score=33.72 Aligned_cols=114 Identities=20% Similarity=0.361 Sum_probs=60.8
Q ss_pred EEEEeeeCCCCCCC-CcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHHHH
Q 005182 84 VIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAA 162 (710)
Q Consensus 84 ~V~tyv~Wn~hEp~-~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~ 162 (710)
.|.++|.|++|=-+ |. ...|+.|+++|..|+= ..|. ||+.| ..|+.. +.-+..+..
T Consensus 28 yiD~fvywsh~~i~iP~----------~~widaAHrnGV~vLG---Tiif-e~~~~--~~~~~~---ll~~~~~g~---- 84 (311)
T PF03644_consen 28 YIDIFVYWSHGLITIPP----------AGWIDAAHRNGVKVLG---TIIF-EWGGG--AEWCEE---LLEKDEDGS---- 84 (311)
T ss_dssp G-SEEEET-TBSSE-------------HHHHHHHHHTT--EEE---EEEE-EEE----HHHHHH---HT---TTS-----
T ss_pred ceeeEeecccccccCCC----------chhHHHHHhcCceEEE---EEEe-cCCch--HHHHHH---HHcCCcccc----
Confidence 57889999965422 21 2579999999999952 3344 77643 355542 101122222
Q ss_pred HHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCCchHHHHHHHHHHhhh-cCCCcceEE
Q 005182 163 MHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVG-LNTGVPWVM 229 (710)
Q Consensus 163 ~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~-~g~~vP~~~ 229 (710)
.++.++|+++.+.+++ + | +++-+|+..+... ..+.-.++++.|++.+++ -+..|-|+.
T Consensus 85 -~~~A~kLi~ia~~yGF---D-G--w~iN~E~~~~~~~--~~~~l~~F~~~l~~~~~~~~~~~v~WYD 143 (311)
T PF03644_consen 85 -FPYADKLIEIAKYYGF---D-G--WLINIETPLSGPE--DAENLIDFLKYLRKEAHENPGSEVIWYD 143 (311)
T ss_dssp --HHHHHHHHHHHHHT------E--EEEEEEESSTTGG--GHHHHHHHHHHHHHHHHHT-T-EEEEES
T ss_pred -cHHHHHHHHHHHHcCC---C-c--eEEEecccCCchh--HHHHHHHHHHHHHHHhhcCCCcEEEEee
Confidence 3456778877775554 2 3 8888999876410 012246788888888887 223455553
No 221
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.97 E-value=2.8e+02 Score=29.38 Aligned_cols=83 Identities=10% Similarity=0.084 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEE--EeecCccccceecCCCCCeecccCC
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWLKYVP 148 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~V--ilr~GPyi~aEw~~GG~P~WL~~~p 148 (710)
.+-++.++++|+++|++++- .|+--..+.....+.++|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 56899999999999999653 22211111112236778888999998863 33334553
Q ss_pred CeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 149 GIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 149 ~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
+.+-+.|+.-++..-+.+++.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334566666666666666655555
No 222
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=29.95 E-value=3.9e+02 Score=29.35 Aligned_cols=137 Identities=14% Similarity=0.159 Sum_probs=67.2
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecc
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (710)
..+...+.-+.+...|+|.|.+ |-..-.+-...=+-...+.++-++.+.+||+|-|-.- ..+--.-||+
T Consensus 55 ~~~R~~~YARllASiGINgvvl----NNVNa~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn--FasP~~lggL----- 123 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVL----NNVNANPKLLTPEYLDKVARLADVFRPYGIKVYLSVN--FASPIELGGL----- 123 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-----S-SS--CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE---TTHHHHTTS------
T ss_pred chhHHHHHHHHHhhcCCceEEe----cccccChhhcCHHHHHHHHHHHHHHhhcCCEEEEEee--ccCCcccCCc-----
Confidence 4455678888899999999998 4333333222222334777788888999999987641 0111223443
Q ss_pred cCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCCchHHHHHHHHHHhhhcCCCc
Q 005182 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGV 225 (710)
Q Consensus 146 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 225 (710)
.|.|| .-.+|.+|+++.++.|-+ ..=.=||=++=.-=|.+.|-+ .||-.-.+=...|++..+-+|=-|
T Consensus 124 -------~TaDP-ld~~V~~WW~~k~~eIY~--~IPDfgGflVKAdSEGqPGP~--~YgRthAdGANmlA~Al~P~GG~V 191 (328)
T PF07488_consen 124 -------PTADP-LDPEVRQWWKDKADEIYS--AIPDFGGFLVKADSEGQPGPF--TYGRTHADGANMLARALKPHGGIV 191 (328)
T ss_dssp -------S---T-TSHHHHHHHHHHHHHHHH--H-TT--EEEE--SBTTB--GG--GGT--HHHHHHHHHHHHGGGT-EE
T ss_pred -------CcCCC-CCHHHHHHHHHHHHHHHH--hCCCccceEEEecCCCCCCCc--ccCCCchhhHHHHHHHhhccCCEE
Confidence 23333 346678888777666652 211234544444445555544 356433444556777777776333
No 223
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=29.92 E-value=1.9e+02 Score=30.81 Aligned_cols=107 Identities=19% Similarity=0.174 Sum_probs=66.7
Q ss_pred eEEEEEEeeCCCCCcc----chHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEE--Eee
Q 005182 53 RILISGSIHYPRSTPE----MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLR 126 (710)
Q Consensus 53 ~~i~sG~~Hy~r~~~~----~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~V--ilr 126 (710)
.+-+++..|+.+-+.. .=.++|++-.++|.+.+-|- =.||.+ .+.+|++.|++.|+.+ ++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ----------~~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQ----------LFFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeec----------cccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 4678888887764332 22345666668999988882 245555 8889999999997664 444
Q ss_pred cCccc-------cceecCCCCCeecccCCCeEEe-cCC-hhHHHHHHHHHHHHHHHHH
Q 005182 127 IGPYV-------CAEWNYGGFPVWLKYVPGIEFR-TDN-GPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 127 ~GPyi-------~aEw~~GG~P~WL~~~p~~~~R-~~d-~~y~~~~~~~~~~l~~~i~ 175 (710)
+-|-. ..+|..-.+|.|+.+. + -+ .++ ...+++--++..++++.+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~--l-~~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKR--L-EKYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHH--H-HhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44422 2236666789888762 1 11 123 3455556666666666666
No 224
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=29.77 E-value=98 Score=28.48 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=25.9
Q ss_pred ceEEEEECCEEEEEEEcccCCCeEEEecceecCCCccEEEEEEe
Q 005182 511 HALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLST 554 (710)
Q Consensus 511 d~~~VfVNG~~vGs~~g~~~~~~~~~~~~v~Lk~G~N~L~ILve 554 (710)
-...|||||+++|+... ..|..- .+.+|+++|+...+
T Consensus 41 ~~~~v~vdg~~ig~l~~----g~y~~~---~v~pG~h~i~~~~~ 77 (117)
T PF11008_consen 41 VKPDVYVDGELIGELKN----GGYFYV---EVPPGKHTISAKSE 77 (117)
T ss_pred ccceEEECCEEEEEeCC----CeEEEE---EECCCcEEEEEecC
Confidence 35568999999999654 234432 37889999887444
No 225
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=29.36 E-value=1.2e+02 Score=31.08 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=51.7
Q ss_pred EeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEE--EeecCccccceec
Q 005182 59 SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWN 136 (710)
Q Consensus 59 ~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~V--ilr~GPyi~aEw~ 136 (710)
++|---..|+. .+++++++|.+.|.+ +.|..+ ++.++|+.++++|+.+ .|.|+. +
T Consensus 61 DvHLMv~~P~~---~i~~~~~~g~~~i~~-----H~E~~~---------~~~~~i~~ik~~g~k~GialnP~T------~ 117 (201)
T PF00834_consen 61 DVHLMVENPER---YIEEFAEAGADYITF-----HAEATE---------DPKETIKYIKEAGIKAGIALNPET------P 117 (201)
T ss_dssp EEEEESSSGGG---HHHHHHHHT-SEEEE-----EGGGTT---------THHHHHHHHHHTTSEEEEEE-TTS-------
T ss_pred EEEeeeccHHH---HHHHHHhcCCCEEEE-----cccchh---------CHHHHHHHHHHhCCCEEEEEECCC------C
Confidence 34432234554 456778889999988 444333 7889999999999996 455543 1
Q ss_pred CCCCCeecccCCCeEEecCCh-----hHHHHHHHHHHHHHHHHHh
Q 005182 137 YGGFPVWLKYVPGIEFRTDNG-----PFKAAMHKFTEKIVSMMKA 176 (710)
Q Consensus 137 ~GG~P~WL~~~p~~~~R~~d~-----~y~~~~~~~~~~l~~~i~~ 176 (710)
.--+-.+|.....+.+=+-+| .|.+.+-+=++++.+.+.+
T Consensus 118 ~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~ 162 (201)
T PF00834_consen 118 VEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPE 162 (201)
T ss_dssp GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHH
T ss_pred chHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 112333443322233333334 4666665556666666653
No 226
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=29.00 E-value=39 Score=36.89 Aligned_cols=60 Identities=18% Similarity=0.389 Sum_probs=36.3
Q ss_pred EEEEEEeeC------CCCCccchHHHHHHHHHc-CCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEE
Q 005182 54 ILISGSIHY------PRSTPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (710)
Q Consensus 54 ~i~sG~~Hy------~r~~~~~W~~~l~k~Ka~-G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vi 124 (710)
++.||. |. .+++.+-+++.+++--.+ |+|-++- ||...++.. ....++|++|+++|-|.|
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eq--fWgf~~~~~--------~~~A~lLkl~akYGGy~i 170 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQ--FWGFDDPGS--------EHFADLLKLCAKYGGYFI 170 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE----TTS--TTHH--------HHHHHHHHHHHHTT-EEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhh--heecCCchh--------HHHHHHHHHHHHhCceEE
Confidence 456677 83 334555566666666654 8888887 577666544 377899999999999983
No 227
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=28.71 E-value=59 Score=34.22 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCC---CcceecccchhHHHHHHHHHHcCCEEEeecCc
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT---QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~---~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GP 129 (710)
+..++.++.++++|+++|.+ |..+.+. +..+. .-...|.++.++|+++|+.+.+.+-+
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~---~~g~~~~~~~~~~~~-~~~~~l~~l~~~a~~~gi~l~lEn~~ 145 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVF---HPGSYLGQSKEEGLK-RVIEALNELIDKAETKGVVIALETMA 145 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEE---CCCCCCCCCHHHHHH-HHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 45788999999999998765 3333321 11111 01247788888888999999999843
No 228
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=28.61 E-value=2.3e+02 Score=31.03 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=83.6
Q ss_pred cceeEEEecCeEEECCEEeEEEEEEeeCCCCC---ccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHH
Q 005182 35 VKASVSYDHKAVIINGQKRILISGSIHYPRST---PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (710)
Q Consensus 35 ~~~~v~~d~~~~~idGkp~~i~sG~~Hy~r~~---~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~ 111 (710)
....|+.-+..+.+|. .-+.++.=+-+-.. -..-...+...++.|.+||-. +.+ =.=-||..+
T Consensus 14 ~~lGvTl~HEHl~~~~--~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD--------~T~----~~~GRdv~~ 79 (316)
T COG1735 14 ADLGVTLMHEHLFIDP--YEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVD--------ATN----IGIGRDVLK 79 (316)
T ss_pred HHccceeehhhhccch--HHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEee--------CCc----cccCcCHHH
Confidence 3445666666666665 11112211111111 111234566777789998865 222 011369999
Q ss_pred HHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEec
Q 005182 112 FIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (710)
Q Consensus 112 fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~Q 191 (710)
+.+.+++.||.+|..+|+|.-+.|+ .|+...+ ++.+..-+.+.+.+ .. . |+=|..=
T Consensus 80 m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--------------i~~~ae~~v~ei~~-Gi---~-gT~ikAG 135 (316)
T COG1735 80 MRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--------------IEELAEFVVKEIEE-GI---A-GTGIKAG 135 (316)
T ss_pred HHHHHHHhCCcEEEeccccccccch-----hHHhhCC--------------HHHHHHHHHHHHHh-cc---c-CCccccc
Confidence 9999999999999999999987764 6766432 34444445555541 21 2 2222222
Q ss_pred cccccCCccccCCCchHHHHHHHHHHhhhc-CCCcceEEecC
Q 005182 192 IENEFGPVEWDIGAPGKAYAKWAAQMAVGL-NTGVPWVMCKQ 232 (710)
Q Consensus 192 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vP~~~~~~ 232 (710)
|=-|-|.+. .-.+.=.+.|+..++.. -.++|+.+..+
T Consensus 136 iIk~~~~~~----~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~ 173 (316)
T COG1735 136 IIKEAGGSP----AITPLEEKSLRAAARAHKETGAPISTHTP 173 (316)
T ss_pred eeeeccCcc----cCCHHHHHHHHHHHHHhhhcCCCeEEecc
Confidence 223444432 11222334455544432 34789876654
No 229
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=28.35 E-value=78 Score=35.17 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=38.9
Q ss_pred HHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 74 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.+.+-++|.++|.+.|+|.- .+...-..+|.+..+.|++.||-|+++.
T Consensus 152 VedAlrLGAdAV~~tvy~Gs------~~E~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFGS------EESRRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred HHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 66788999999999999982 2223344589999999999999999864
No 230
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=28.28 E-value=1.4e+02 Score=31.78 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=40.6
Q ss_pred CCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEee
Q 005182 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 65 ~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr 126 (710)
.|.+.=+++++++.+.|+..|+++++-+. ...+...++.|+++|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEEE
Confidence 34455688999999999999999887654 237889999999999987753
No 231
>PRK04302 triosephosphate isomerase; Provisional
Probab=28.12 E-value=1.2e+02 Score=31.16 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=43.5
Q ss_pred EEEEeeCCCCCccc--hHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCc
Q 005182 56 ISGSIHYPRSTPEM--WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (710)
Q Consensus 56 ~sG~~Hy~r~~~~~--W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GP 129 (710)
+.+ .|+....+.. =+.-++++|++|++.|-+ .+-|.. -.|. .+.++++.|+++||.+|+..|.
T Consensus 59 v~a-q~~~~~~~G~~tg~~~~~~l~~~G~~~vii----~~ser~---~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 59 VYA-QHVDPVEPGSHTGHILPEAVKDAGAVGTLI----NHSERR---LTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred EEe-ccCCCCCCCCchhhhHHHHHHHcCCCEEEE----eccccc---cCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 444 5765543332 234588999999999988 222322 3344 5889999999999999998753
No 232
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=28.11 E-value=2.8e+02 Score=31.67 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCCEEEEeee----CCCCCCCCcceecccchhHHHHHHHHHHcCCEE--EeecCccccceecCCCCCeec
Q 005182 71 PDLIQKAKDGGLDVIQTYVF----WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWL 144 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~----Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~V--ilr~GPyi~aEw~~GG~P~WL 144 (710)
...++.+.+.|+|++++++- |..-+..+ .++++|.++|+++||.+ ++-=+||.
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl------------- 202 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL------------- 202 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce-------------
Confidence 45778899999999999864 65444433 48899999999998852 44456663
Q ss_pred ccCCCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 145 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
+.+-+.|+.-++...+.+.+-+++-+
T Consensus 203 -----INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 203 -----INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred -----ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334556655655555555444444
No 233
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=28.01 E-value=1.3e+02 Score=33.04 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=49.0
Q ss_pred EECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEee
Q 005182 47 IINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 47 ~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr 126 (710)
.+.|++++.++|--++ +.-++.++++|++.+.+..|=.||.-.+ .||+.+.+.|++.| .|+-
T Consensus 224 ~l~~~~v~a~sGIg~P--------~~F~~~L~~~G~~~~~~~~f~DHh~yt~--------~dl~~l~~~a~~~~--~ilt 285 (326)
T PF02606_consen 224 PLKGKPVLAFSGIGNP--------ERFFDTLESLGIEVVGTLAFPDHHRYTE--------QDLEKLEAEAKAAG--IILT 285 (326)
T ss_pred hccCCeeEEEEEcCCh--------HHHHHHHHHcCCeEEEeeECCCCCCCCH--------HHHHHHHHhhcccc--eEEe
Confidence 4789999999998886 4556778889999998877766665444 58999999999998 4444
Q ss_pred c
Q 005182 127 I 127 (710)
Q Consensus 127 ~ 127 (710)
+
T Consensus 286 T 286 (326)
T PF02606_consen 286 T 286 (326)
T ss_pred c
Confidence 3
No 234
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=27.34 E-value=2.6e+02 Score=32.07 Aligned_cols=109 Identities=16% Similarity=0.267 Sum_probs=62.3
Q ss_pred eCCCC--CccchHHHHHHHHHcCCCEEEEe-eeCCCCCCCC----cceecc-----cc-----hhHHHHHHHHH-HcCCE
Q 005182 61 HYPRS--TPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQ----GNYYFQ-----DR-----YDLVRFIKLVQ-QAGLY 122 (710)
Q Consensus 61 Hy~r~--~~~~W~~~l~k~Ka~G~N~V~ty-v~Wn~hEp~~----G~fdf~-----g~-----~dl~~fi~la~-~~GL~ 122 (710)
+.+++ +-+.|++.|+.++++|.|+|..- +-=-....+| ++..|+ .. .+|.++++.++ ++||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 44443 55689999999999999999752 2111111111 222221 12 49999999984 79999
Q ss_pred EEeecCccccceecC-CCCCeecccCCCeEEecCChhHHHHH---HHHHHHHHHHHH
Q 005182 123 VHLRIGPYVCAEWNY-GGFPVWLKYVPGIEFRTDNGPFKAAM---HKFTEKIVSMMK 175 (710)
Q Consensus 123 Vilr~GPyi~aEw~~-GG~P~WL~~~p~~~~R~~d~~y~~~~---~~~~~~l~~~i~ 175 (710)
++... + |+- .-==.||...|+.-.-..+.++++.. ++.+.++...|.
T Consensus 93 ~~~Dv---V---~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 93 SMTDV---V---LNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred EEEEE---e---eccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 76554 1 111 11246898888754444455555543 334444444444
No 235
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=27.14 E-value=2.9e+02 Score=28.41 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=69.2
Q ss_pred ccchHHHHHHHHHcCCCE-EEE--eeeCCCCC---CCCcc--eec-----------cc--chhHHHHHHHHHHcCCEEEe
Q 005182 67 PEMWPDLIQKAKDGGLDV-IQT--YVFWNGHE---PTQGN--YYF-----------QD--RYDLVRFIKLVQQAGLYVHL 125 (710)
Q Consensus 67 ~~~W~~~l~k~Ka~G~N~-V~t--yv~Wn~hE---p~~G~--fdf-----------~g--~~dl~~fi~la~~~GL~Vil 125 (710)
++.-.+.++++|+.|+.+ |+| |+.|...+ |.=+. +|. +| +..+.+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 355678899999999873 555 33332111 11111 222 22 24556778888899999999
Q ss_pred ecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEEecccc-----------
Q 005182 126 RIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN----------- 194 (710)
Q Consensus 126 r~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiEN----------- 194 (710)
|. |. .|++ .+++.-++++.+|++.+. +. +|-+..--+
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg~ 180 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLGK 180 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcCC
Confidence 87 32 2443 234555566655554431 11 221111111
Q ss_pred ccCCccccCCCchHHHHHHHHHHhhhcCCCc
Q 005182 195 EFGPVEWDIGAPGKAYAKWAAQMAVGLNTGV 225 (710)
Q Consensus 195 Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 225 (710)
+|-.. ....+..+.++.+++++++.|+.+
T Consensus 181 ~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 181 TWSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred cCccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 22111 112356889999999999999876
No 236
>PRK08227 autoinducer 2 aldolase; Validated
Probab=27.09 E-value=74 Score=34.01 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEe
Q 005182 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (710)
Q Consensus 72 ~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vil 125 (710)
-..+.+-++|.++|.++|+|.-. +.-+-..+|.+..+.|++.||-+++
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs~------~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGSE------YEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCCH------HHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 34667889999999999999821 1122335899999999999999886
No 237
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.99 E-value=24 Score=35.41 Aligned_cols=66 Identities=26% Similarity=0.406 Sum_probs=43.0
Q ss_pred EEEEEeeCCCC---CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEee
Q 005182 55 LISGSIHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 55 i~sG~~Hy~r~---~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr 126 (710)
.-+|--.|.|+ .|-.-+ +-+.++|++.+-.=. ..---.--|||-....|..|+++|+++||.+-|-
T Consensus 118 VAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDT---aiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 118 VAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDT---AIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EeccccchhhccCcCccccH---HHHHhcCCCEEEEec---ccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 44555556664 333333 347788998654300 1112233599988899999999999999987654
No 238
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=26.75 E-value=1e+02 Score=33.53 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=42.3
Q ss_pred CccchHHHHHHHHHcCCCEEEEeee----CCCCCC------CCcceec------ccchhHHHHHHHHHHcCCEEEeec
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------TQGNYYF------QDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~----Wn~hEp------~~G~fdf------~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
+.+.-++.|+.|-..++|++..++- |.+--+ +.|.+.- =-..|++++++.|++.||.||-.+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 6778899999999999999999875 433221 1222211 112499999999999999998664
No 239
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=26.67 E-value=1.1e+02 Score=36.50 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=44.8
Q ss_pred eeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEe
Q 005182 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (710)
Q Consensus 60 ~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vil 125 (710)
+=|.|.|.+.-+..++++++.|+.+|++....|.. +++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 44666777778889999999999999998766653 4888999999999998643
No 240
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=26.40 E-value=3.7e+02 Score=30.75 Aligned_cols=85 Identities=18% Similarity=0.109 Sum_probs=59.7
Q ss_pred CeEEECCEEeEEEEEEeeCCCCC---ccchHHHHHHHHHcCCCE--E--EEeeeCCCCCCCCcceecccchhHHHHHHHH
Q 005182 44 KAVIINGQKRILISGSIHYPRST---PEMWPDLIQKAKDGGLDV--I--QTYVFWNGHEPTQGNYYFQDRYDLVRFIKLV 116 (710)
Q Consensus 44 ~~~~idGkp~~i~sG~~Hy~r~~---~~~W~~~l~k~Ka~G~N~--V--~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la 116 (710)
++..+++.-|+|+.+.-+-++.+ ++.-+.-.+.+++.|++. | ...-.-|+-.|.+..++++ ..-|.+-|+.|
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA 227 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRC 227 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 44567778888998888766543 344455667788888863 3 2222267777888777776 45677889999
Q ss_pred HHcCCE-EEeecCc
Q 005182 117 QQAGLY-VHLRIGP 129 (710)
Q Consensus 117 ~~~GL~-Vilr~GP 129 (710)
++.|.. |++-||=
T Consensus 228 ~~LGa~~VV~HPGs 241 (413)
T PTZ00372 228 EQLGIKLYNFHPGS 241 (413)
T ss_pred HHcCCCEEEECCCc
Confidence 999998 6778873
No 241
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=26.30 E-value=58 Score=34.30 Aligned_cols=49 Identities=24% Similarity=0.366 Sum_probs=30.9
Q ss_pred cchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEE-eecCccccce
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAE 134 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vi-lr~GPyi~aE 134 (710)
+.-.+.++++|+.|+ -|+. +.+|.+ +.|+.|++.|-..| |-+|||..+.
T Consensus 111 ~~l~~~i~~L~~~gI-rvSL-----FiDP~~------------~qi~~A~~~Gad~VELhTG~yA~a~ 160 (239)
T PF03740_consen 111 DRLKPVIKRLKDAGI-RVSL-----FIDPDP------------EQIEAAKELGADRVELHTGPYANAF 160 (239)
T ss_dssp HHHHHHHHHHHHTT--EEEE-----EE-S-H------------HHHHHHHHTT-SEEEEETHHHHHHS
T ss_pred HHHHHHHHHHHhCCC-EEEE-----EeCCCH------------HHHHHHHHcCCCEEEEehhHhhhhc
Confidence 344667778888887 4444 356665 66888888888755 8888887543
No 242
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=26.08 E-value=91 Score=34.44 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccc----hhHHHHHHHHHHcCCE
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR----YDLVRFIKLVQQAGLY 122 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~----~dl~~fi~la~~~GL~ 122 (710)
++.|+.||++|+|.|++ ..-.-.+...+.-|+ .++.+.++.++++|+.
T Consensus 100 ~e~l~~l~~~Gv~risi----GvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSL----GVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred HHHHHHHHHcCCCEEEE----ecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 57789999999999999 333344444444332 3788899999999985
No 243
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=26.08 E-value=1.5e+02 Score=29.69 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=33.2
Q ss_pred HHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEee
Q 005182 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 73 ~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr 126 (710)
.+++++++|.+.|.+.... + ...+.++++.|+++|+.+++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~------~-------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA------D-------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccC------C-------HHHHHHHHHHHHHcCCEEEEE
Confidence 6889999999999984332 1 136789999999999999876
No 244
>PRK06703 flavodoxin; Provisional
Probab=26.03 E-value=3.4e+02 Score=25.69 Aligned_cols=103 Identities=13% Similarity=0.063 Sum_probs=60.5
Q ss_pred ECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 48 idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
+..-..++++...+-.-.+|..+.+-+..+++.-++.....+|-...-. |. ......+.+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~-~~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YP-LFCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hH-HHHHHHHHHHHHHHHCCCEEcccC
Confidence 4444556665544433445666787788888766666566666322111 11 022456667788899999888765
Q ss_pred CccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHH
Q 005182 128 GPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (710)
Q Consensus 128 GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~ 175 (710)
+- ++...++..-+++.++|.++|++.++
T Consensus 121 ---~~-----------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ---LK-----------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ---eE-----------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 10 11111224567888888888887766
No 245
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=25.90 E-value=1.4e+02 Score=30.80 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=37.3
Q ss_pred EeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 59 SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 59 ~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
++|--=..|+. .++.+.++|.+.|.+ +-|..+ ++.++|+.++++|+++-+-.
T Consensus 62 dvHLMv~~p~~---~i~~~~~~gad~i~~-----H~Ea~~---------~~~~~l~~ik~~g~k~Glal 113 (220)
T PRK08883 62 DVHLMVKPVDR---IIPDFAKAGASMITF-----HVEASE---------HVDRTLQLIKEHGCQAGVVL 113 (220)
T ss_pred EEEeccCCHHH---HHHHHHHhCCCEEEE-----cccCcc---------cHHHHHHHHHHcCCcEEEEe
Confidence 45543334444 467788899999999 555443 68899999999999865544
No 246
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=25.67 E-value=76 Score=33.86 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=42.4
Q ss_pred HHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 74 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
-+++|+.|-++|-+-|.|..-||+- +-.-..-|++|...|..++|..+|.|
T Consensus 117 a~riK~~G~~avK~Lvy~~~D~~e~---neqk~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 117 AKRIKEDGGDAVKFLVYYRSDEDEI---NEQKLAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred HHHHHHhcccceEEEEEEcCCchHH---hHHHHHHHHHHHHHhhhcCCceeEee
Confidence 4679999999999999999999822 22223367999999999999999998
No 247
>PRK05660 HemN family oxidoreductase; Provisional
Probab=25.63 E-value=92 Score=34.78 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCcceeccc----chhHHHHHHHHHHcCCE
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD----RYDLVRFIKLVQQAGLY 122 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g----~~dl~~fi~la~~~GL~ 122 (710)
++.|+.||++|+|.|++ ....-.+-..+.-| ..++.+.++.|++.|+.
T Consensus 107 ~e~l~~Lk~~Gv~risi----GvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~ 158 (378)
T PRK05660 107 ADRFVGYQRAGVNRISI----GVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLR 158 (378)
T ss_pred HHHHHHHHHcCCCEEEe----ccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 58899999999999999 44444444444333 24778889999999995
No 248
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=25.61 E-value=57 Score=33.95 Aligned_cols=88 Identities=20% Similarity=0.399 Sum_probs=39.9
Q ss_pred hHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCc-cccceecCCCCCeecccCC
Q 005182 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP-YVCAEWNYGGFPVWLKYVP 148 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GP-yi~aEw~~GG~P~WL~~~p 148 (710)
-+...+.+++.|++.|.+ . +||.|... .++-++|++.|+.+.+.+-| ++|..-+ +-.|....+
T Consensus 80 ~~~L~~~~~~~~~~~~~~------~--~P~d~~l~-----~~l~~~~~~~~i~~~~~~~~~Fl~s~~~---f~~~~~~~k 143 (224)
T PF04244_consen 80 EDALARALKQHGIDRLHV------M--EPGDYRLE-----QRLESLAQQLGIPLEVLEDPHFLTSREE---FAEWFEGRK 143 (224)
T ss_dssp HHHHHHHHHHH----EEE------E----S-HHHH-----HHHHH----SSS-EEEE--TTSSS-HHH---HHHHHTT-S
T ss_pred HHHHHHHHHHcCCCEEEE------E--CCCCHHHH-----HHHHhhhcccCCceEEeCCCCccCCHHH---HHHHHccCC
Confidence 444557888889999988 3 34555443 45556688899998888766 5553221 223333211
Q ss_pred CeEEecCChhHHHHHHHHHHHHHHHHHhccccc-cCCCce
Q 005182 149 GIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQ-TQGGPI 187 (710)
Q Consensus 149 ~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~-~~gGpI 187 (710)
. -.|+.||+.+-++.. ++. .+|.||
T Consensus 144 ~-----------~~Me~FYR~mRkr~~---ILmd~~g~P~ 169 (224)
T PF04244_consen 144 R-----------LRMEYFYREMRKRFG---ILMDEDGKPV 169 (224)
T ss_dssp S-------------HHHHHHHHHHHHT---TTE-ETTEEG
T ss_pred c-----------eeHHHHHHHHHHHcC---ccccCCCCcC
Confidence 1 135677777665554 333 455564
No 249
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=25.53 E-value=4.2e+02 Score=26.13 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCCchHHHHHHHHHHhh
Q 005182 163 MHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAV 219 (710)
Q Consensus 163 ~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 219 (710)
+.+-+.+++..++ ..+.++|.+ .||.|.-.-.+.+..+.|.+.|-.+-+
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~lnq 149 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILV--SNEVGLGVVPENALGRRFRDELGRLNQ 149 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3344555666666 245688887 599986433345567889887765443
No 250
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=25.43 E-value=2.3e+02 Score=34.90 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=33.6
Q ss_pred cceEEEEECCEEEEEEEcc----cCCCeEEEecceecCCCccEEEEEEeecC
Q 005182 510 GHALQVFINGQLSGTVYGS----LENPKLTFSKNVKLRPGVNKISLLSTSVG 557 (710)
Q Consensus 510 ~d~~~VfVNG~~vGs~~g~----~~~~~~~~~~~v~Lk~G~N~L~ILven~G 557 (710)
.....|+|||+.+|+..=. ......+++.+..+..|.|+|++.....-
T Consensus 114 ~S~L~V~lNg~~v~s~pL~~~~~~~~~~~~i~IP~~l~~g~N~L~~~~~~~~ 165 (756)
T PRK11114 114 LSHLKVYLNGELMGTLPLDKEQLGKKVLAQLPIDPRFITDFNRLRLEFIGHY 165 (756)
T ss_pred CCeEEEEECCEEeEEEecCcccCCCcceeEEecCHHHcCCCceEEEEEecCC
Confidence 5689999999999988422 11234555555456778999998866543
No 251
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.40 E-value=1.4e+02 Score=31.95 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=35.9
Q ss_pred hHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCc
Q 005182 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GP 129 (710)
-++-+++++++|++.|-+ .-+|-+ ...+|++.|+++||..|+=..|
T Consensus 108 ~e~F~~~~~~aGvdgvii-----pDLP~e---------e~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 108 INKFIKKISQAGVKGLII-----PDLPYE---------ESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred HHHHHHHHHHcCCeEEEe-----cCCCHH---------HHHHHHHHHHHcCCCEEEEECC
Confidence 367789999999999999 333433 5679999999999997766544
No 252
>PLN02231 alanine transaminase
Probab=25.33 E-value=1.5e+02 Score=34.85 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=44.8
Q ss_pred CCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEee
Q 005182 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr 126 (710)
+.+..+..++.++..+..|+++--+++. |-|.|.=-.++=+ .+.+++++|+++|+.||..
T Consensus 251 ~~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 251 WGLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 3456666677776666677776555665 7788886667666 8999999999999998865
No 253
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.18 E-value=2.6e+02 Score=27.07 Aligned_cols=82 Identities=24% Similarity=0.342 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhhcccccccceeEEEecCeEEECCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCC
Q 005182 17 VKVLMLVLLSFCSWEISFVKASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP 96 (710)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~idGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp 96 (710)
.++|.|++|||.+..+.....-+++. .-||.+ ++ -.++.+.|.+--||+|-.+|.
T Consensus 4 ~r~ll~~fL~l~~~slaqa~~ilTiq----~ad~~~-----------~~------ft~qeLeal~~~T~ete~Pw~---- 58 (155)
T COG3915 4 MRVLLLTFLALISSSLAQAEPILTIQ----IADGPT-----------VS------FTLQELEALPDETIETETPWT---- 58 (155)
T ss_pred HHHHHHHHHHHHhhHHhhcCceEEEE----ecCCCc-----------ee------ecHHHHhcCCcceEEEecCcc----
Confidence 35666677776666665555444443 112222 10 135678889999999999985
Q ss_pred CCcceecccc--hhHHHHHHHHHHcCCEEEe
Q 005182 97 TQGNYYFQDR--YDLVRFIKLVQQAGLYVHL 125 (710)
Q Consensus 97 ~~G~fdf~g~--~dl~~fi~la~~~GL~Vil 125 (710)
.|.-.|+|. .+|-+.+. |+...+.||.
T Consensus 59 -~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 59 -QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred -cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 467778886 36666666 5556666664
No 254
>PLN03036 glutamine synthetase; Provisional
Probab=25.16 E-value=1.8e+02 Score=33.40 Aligned_cols=65 Identities=20% Similarity=0.323 Sum_probs=46.4
Q ss_pred chHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccc----------hhH-HHHH-HHHHHcCCEEEeecCccccceec
Q 005182 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR----------YDL-VRFI-KLVQQAGLYVHLRIGPYVCAEWN 136 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~----------~dl-~~fi-~la~~~GL~Vilr~GPyi~aEw~ 136 (710)
.-++..+.+.++|++.-.+ +||-.||+|.|.=. ..+ +.++ ++|+++|+.+-.-|=|+. ++|+
T Consensus 231 i~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~~ 304 (432)
T PLN03036 231 ISDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDWN 304 (432)
T ss_pred HHHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCcC
Confidence 3445666889999999888 99999999987611 111 2222 468899999999888853 5666
Q ss_pred CCC
Q 005182 137 YGG 139 (710)
Q Consensus 137 ~GG 139 (710)
.-|
T Consensus 305 GSG 307 (432)
T PLN03036 305 GAG 307 (432)
T ss_pred CCC
Confidence 555
No 255
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=25.15 E-value=1.3e+02 Score=28.52 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=36.8
Q ss_pred chHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.-++.++++++.|+.+|.+ .-|..-. ....+.+.|++.||.+++..
T Consensus 17 ~~~e~v~~A~~~Gl~~i~i----TDH~~~~---------~~~~~~~~~~~~~i~vi~G~ 62 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAI----TDHNNFA---------GYPDFYKEAKKKGIKVIPGV 62 (175)
T ss_dssp SHHHHHHHHHHTTESEEEE----EEETTTT---------THHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEE----cCCcccc---------cchHHHHHHHhcCCceEEeE
Confidence 4688999999999999998 5563333 46788999999999988754
No 256
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=24.26 E-value=1e+02 Score=32.34 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=32.3
Q ss_pred EECCEEeEEEEEEeeCCCC-CccchHHHHHHHHHcCCCEEEE
Q 005182 47 IINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQT 87 (710)
Q Consensus 47 ~idGkp~~i~sG~~Hy~r~-~~~~W~~~l~k~Ka~G~N~V~t 87 (710)
.+.|+++..+.|..|+... ...+-+--++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 4689999999999997654 3444477899999999987643
No 257
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=23.94 E-value=9.9e+02 Score=26.27 Aligned_cols=235 Identities=14% Similarity=0.144 Sum_probs=104.8
Q ss_pred HHHHHHHHcCCCEEEE-------eeeCCCCCCCCcceecccch-hHHHHHHHHHHcCCEEEeecCccccceecCCCCCee
Q 005182 72 DLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQDRY-DLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVW 143 (710)
Q Consensus 72 ~~l~k~Ka~G~N~V~t-------yv~Wn~hEp~~G~fdf~g~~-dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~W 143 (710)
+-.+.+|++|+.-|-. +-.|.-.-..-..-+-...+ -+.+|.+.|+++||++-+=-.| ++|.....+.-
T Consensus 95 qW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw~~~~~~~~ 171 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDWHHPDYPPD 171 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSCCCTTTTSS
T ss_pred HHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHhcCcccCCC
Confidence 3467899999995532 12244332221222222233 5678999999999987764332 35654333222
Q ss_pred cccC-CCeEEecCChhHHHHHH-HHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCCchHHHHHHHHHHhhhc
Q 005182 144 LKYV-PGIEFRTDNGPFKAAMH-KFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL 221 (710)
Q Consensus 144 L~~~-p~~~~R~~d~~y~~~~~-~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~ 221 (710)
.... +. .....+.+.+.++ .++.+|.+.+.+++. .+|=+-..... .....-...+.++.++.
T Consensus 172 ~~~~~~~--~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~------d~lWfDg~~~~--------~~~~~~~~~~~~~i~~~ 235 (346)
T PF01120_consen 172 EEGDENG--PADGPGNWQRYYNEYWLAQLRELLTRYKP------DILWFDGGWPD--------PDEDWDSAELYNWIRKL 235 (346)
T ss_dssp CHCHHCC----HCCHHHHHHHHHHHHHHHHHHHHCSTE------SEEEEESTTSC--------CCTHHHHHHHHHHHHHH
T ss_pred ccCCccc--ccccchhhHhHhhhhhHHHHHHHHhCCCc------ceEEecCCCCc--------cccccCHHHHHHHHHHh
Confidence 2110 00 1112344555555 556666666663321 12211111100 11222235666677776
Q ss_pred CCCcceEEecCCCCCCccccCCCCccc--cccCCCC-CCCCcc-ccccccccccccCCCCCCCChHHHHHHHHHHHHcCC
Q 005182 222 NTGVPWVMCKQDDAPDPVINTCNGFYC--EKFVPNQ-NYKPKM-WTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGG 297 (710)
Q Consensus 222 g~~vP~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~-~~~P~~-~~E~~~gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 297 (710)
..++.+....+...... ..+. |...+.. ...|.- |+=.-.+||=. -.....++++++...+....++|+
T Consensus 236 qp~~ii~~r~~~~~~~~------~d~~~~E~~~~~~~~~~pwE~~~ti~~~W~y~-~~~~~~ks~~~li~~l~~~vs~ng 308 (346)
T PF01120_consen 236 QPDVIINNRWGGNEQGD------GDYNTPERGIPGEIQGRPWETCTTIGPSWGYN-TPDEKYKSADELIDILVDSVSRNG 308 (346)
T ss_dssp STTSEEECCCSSCSSCC------BSCCEECTTBTTTEEESEEEEEEESSSSSS-C-GGGCGS--HHHHHHHHHHHHTBTE
T ss_pred CCeEEEecccCCCCCcc------ccccchhccCCCCCCCCCccccCcCCCCCccc-CCCCCcCCHHHHHHHHHHHhccCc
Confidence 66553322211111000 0111 1111110 011110 00011344420 112345678888888888889987
Q ss_pred eeeeeeeeecCCCCCCCCCCccccccCCCCCCCcCCCCCchhHHHHHHHHHHHHhhcCc
Q 005182 298 SFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPA 356 (710)
Q Consensus 298 s~~n~YM~hGGTNfG~~~g~~~~tSYDy~Apl~E~G~~~~pky~~lr~l~~~i~~~~~~ 356 (710)
++ -+ +-+.+.+|.+.++.-..|+++...|+..+++
T Consensus 309 nl---LL---------------------NigP~~dG~ip~~~~~~L~e~G~Wl~~ngea 343 (346)
T PF01120_consen 309 NL---LL---------------------NIGPDPDGTIPEEQVERLREIGDWLKVNGEA 343 (346)
T ss_dssp EE---EE---------------------EE---TTSS--HHHHHHHHHHHHHHHHHGGG
T ss_pred eE---EE---------------------ecCCCCCCCcCHHHHHHHHHHHHHHHhcccc
Confidence 73 11 2245567887677788899999999877654
No 258
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.87 E-value=1.3e+02 Score=31.96 Aligned_cols=45 Identities=22% Similarity=0.391 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.++++.+.+.|+..|++.+..+ +++ .+.+.++.|+++|+.|.+-+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
Confidence 4578889999999999977544 344 78889999999999887665
No 259
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=23.75 E-value=1.7e+02 Score=28.95 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEee-cCc
Q 005182 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR-IGP 129 (710)
Q Consensus 72 ~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr-~GP 129 (710)
..++.++++|.+.|.+ +.|+.+ ..+.++++.|+++|+.+++- ++|
T Consensus 68 ~~~~~~~~aGad~i~~-----h~~~~~--------~~~~~~i~~~~~~g~~~~v~~~~~ 113 (202)
T cd04726 68 LEAEMAFKAGADIVTV-----LGAAPL--------STIKKAVKAAKKYGKEVQVDLIGV 113 (202)
T ss_pred HHHHHHHhcCCCEEEE-----EeeCCH--------HHHHHHHHHHHHcCCeEEEEEeCC
Confidence 3568899999999998 333321 25789999999999999875 655
No 260
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.42 E-value=96 Score=32.68 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=38.0
Q ss_pred CCCccchHHHHHHHHHcCCCEEEEeeeCC-CCC---CCCcceec-ccchhHHHHHHHHHHcCCEEEeecC
Q 005182 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWN-GHE---PTQGNYYF-QDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 64 r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn-~hE---p~~G~fdf-~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
..+.+.|++..+..|+.|+..+.|.+--. ... ...-.|-- ++..+=..+|+.+++.|+-|||-+|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 46899999999999999999999943211 110 00111111 2333334689999999999999986
No 261
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=23.38 E-value=1.6e+02 Score=32.93 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=37.1
Q ss_pred HHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 74 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
..++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~i~~Kv~~al~~gl~pIvCiG 136 (355)
T PRK14905 88 PLMLKELGIELVMI-----GHSERRHVLKET-DQEENEKVLAALKHGFITLLCIG 136 (355)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccccc-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999999 454444444333 44677788899999999999986
No 262
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=23.37 E-value=1.7e+02 Score=30.09 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=42.9
Q ss_pred HHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEe
Q 005182 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFR 153 (710)
Q Consensus 74 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R 153 (710)
-+.|+++|++++.. ...+ ..+.+..++.|++.|.-|++|| .+|| .-.+|++-
T Consensus 6 ~~~~~~~gvp~~pg-----~~~~---------~~~~eea~~~a~~iGyPVliKa--------s~gg------GG~gm~iv 57 (211)
T PF02786_consen 6 RKLAKKLGVPVPPG-----STVP---------ISSVEEALEFAEEIGYPVLIKA--------SAGG------GGRGMRIV 57 (211)
T ss_dssp HHHHHHTT-BBSSB-----ESSS---------BSSHHHHHHHHHHH-SSEEEEE--------TTSS------TTTSEEEE
T ss_pred HHHHHHCCCCcCCC-----CCCC---------CCCHHHHHHHHHhcCCceEEee--------cccc------cccccccc
Confidence 35678888877643 1111 1278899999999999999998 2322 13677666
Q ss_pred cCChhHHHHHHHHHHH
Q 005182 154 TDNGPFKAAMHKFTEK 169 (710)
Q Consensus 154 ~~d~~y~~~~~~~~~~ 169 (710)
.+.....+++++..+.
T Consensus 58 ~~~~eL~~~~~~~~~~ 73 (211)
T PF02786_consen 58 HNEEELEEAFERAQRE 73 (211)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhcccc
Confidence 6666666666655444
No 263
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=23.34 E-value=2.5e+02 Score=30.57 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=37.4
Q ss_pred hHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceec-ccc---hhHHHHHHHHHHcCC-EEEee
Q 005182 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYF-QDR---YDLVRFIKLVQQAGL-YVHLR 126 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf-~g~---~dl~~fi~la~~~GL-~Vilr 126 (710)
..+.++.++++|++.|.+ +++-..|..|+- ++. ..+.+.|+.|.+.|+ .|-+.
T Consensus 103 l~~~~~~L~~aGl~~v~I----SlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in 160 (329)
T PRK13361 103 LARFAAELADAGLKRLNI----SLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLN 160 (329)
T ss_pred HHHHHHHHHHcCCCeEEE----EeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEE
Confidence 456788999999999888 666666666652 222 367777888888888 55554
No 264
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.02 E-value=2.7e+02 Score=22.46 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=37.7
Q ss_pred cchHHHHHHHHHcCCCEEEEeee-CCCCCCCCcceecccchhHHHHHHHHHHcCCEEE
Q 005182 68 EMWPDLIQKAKDGGLDVIQTYVF-WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (710)
Q Consensus 68 ~~W~~~l~k~Ka~G~N~V~tyv~-Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vi 124 (710)
..-.+.++.+.+.|+|..+++.. ....+...-.+.+++ .+.+++++..++.|..|+
T Consensus 13 G~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 13 GQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 45677888999999999999754 111111122445554 456799999999997654
No 265
>PRK08175 aminotransferase; Validated
Probab=22.79 E-value=1.1e+02 Score=33.75 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=35.8
Q ss_pred chHHHHHHH-HHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEee
Q 005182 69 MWPDLIQKA-KDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 69 ~W~~~l~k~-Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr 126 (710)
.|.+.|+++ ++.+-++--+++- +-|-|.=-.++-+ .+.+++++|+++|+.+|..
T Consensus 149 ~~~~~l~~~l~~~~~~~~~v~i~-~p~NPtG~~~~~~---~~~~i~~~a~~~~i~ii~D 203 (395)
T PRK08175 149 DFFNELERAIRESYPKPKMMILG-FPSNPTAQCVELE---FFEKVVALAKRYDVLVVHD 203 (395)
T ss_pred CcHHHHHHHHhhccCCceEEEEe-CCCCCCCCCCCHH---HHHHHHHHHHHcCcEEEEe
Confidence 466777654 4433333334444 5566775556655 7889999999999998875
No 266
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=22.77 E-value=1.7e+02 Score=34.82 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=34.7
Q ss_pred cceEEEEECCEEEEEEEcc----cCCCeEEEecceecCCCccEEEEEEeecC
Q 005182 510 GHALQVFINGQLSGTVYGS----LENPKLTFSKNVKLRPGVNKISLLSTSVG 557 (710)
Q Consensus 510 ~d~~~VfVNG~~vGs~~g~----~~~~~~~~~~~v~Lk~G~N~L~ILven~G 557 (710)
+-...|+|||++|++..=. .....+++..|-.+..|.|.|++...-.-
T Consensus 360 ~S~l~V~vNg~~i~s~~L~~~~~~~~~~~~v~iP~~~~~~~N~l~~~f~l~~ 411 (605)
T PF03170_consen 360 GSRLTVYVNGQFIGSLPLTPADGAGFDRYTVSIPRLLLPGRNQLQFEFDLPP 411 (605)
T ss_pred CcEEEEEECCEEEEeEECCCCCCCccceeEEecCchhcCCCcEEEEEEEeec
Confidence 5578899999999998533 23344555555456778999998887775
No 267
>PLN02826 dihydroorotate dehydrogenase
Probab=22.59 E-value=1.2e+03 Score=26.63 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=39.5
Q ss_pred EEEEEeeCCCCCccchHHHHHHHHHcC--CCEEEEeeeCCCCCCC-CcceecccchhHHHHHHHHHH
Q 005182 55 LISGSIHYPRSTPEMWPDLIQKAKDGG--LDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQ 118 (710)
Q Consensus 55 i~sG~~Hy~r~~~~~W~~~l~k~Ka~G--~N~V~tyv~Wn~hEp~-~G~fdf~g~~dl~~fi~la~~ 118 (710)
+++.++.-...+.+.|+|..+.++.++ .+.+++ |.--|. ||.=+......+.++++.+++
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylel----NiScPNtpglr~lq~~~~l~~ll~~V~~ 250 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVI----NVSSPNTPGLRKLQGRKQLKDLLKKVLA 250 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEE----ECCCCCCCCcccccChHHHHHHHHHHHH
Confidence 577777655555556888887777777 788888 666553 555444444567777776653
No 268
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.41 E-value=1.3e+02 Score=31.71 Aligned_cols=59 Identities=20% Similarity=0.135 Sum_probs=37.4
Q ss_pred chHHHHHHHHHcCCCEEEEeee-CCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 69 MWPDLIQKAKDGGLDVIQTYVF-WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~tyv~-Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
..++.|+.++++|+..|.+.-+ +......+..++.. ...|.++.++|+++|+.+.+.+-
T Consensus 100 ~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 100 IMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRF-IDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHH-HHHHHHHHHHHHHhCCEEEEeec
Confidence 3677889999999999976210 00000001111100 13678889999999999999983
No 269
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.34 E-value=1.3e+02 Score=27.74 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=43.0
Q ss_pred eeEEEecCeEEECCEEeEEEEEEe-eC-----CCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHH
Q 005182 37 ASVSYDHKAVIINGQKRILISGSI-HY-----PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (710)
Q Consensus 37 ~~v~~d~~~~~idGkp~~i~sG~~-Hy-----~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~ 110 (710)
.-+-++.+.=.++|.+..---.++ .. .-.+++...+.++.+++.|+..|=+. +| ..-+
T Consensus 29 ~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~ 92 (116)
T PF13380_consen 29 EVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESE 92 (116)
T ss_dssp EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--H
T ss_pred EEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHH
Confidence 344555566677777632211111 10 11378889999999999998877661 11 2446
Q ss_pred HHHHHHHHcCCEEE
Q 005182 111 RFIKLVQQAGLYVH 124 (710)
Q Consensus 111 ~fi~la~~~GL~Vi 124 (710)
+++++|+++||.++
T Consensus 93 ~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 93 ELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHTT-EEE
T ss_pred HHHHHHHHcCCEEE
Confidence 89999999999865
No 270
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=22.08 E-value=1.8e+02 Score=29.14 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=39.0
Q ss_pred HHHHHHHcCCCEEE-----EeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEee
Q 005182 73 LIQKAKDGGLDVIQ-----TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 73 ~l~k~Ka~G~N~V~-----tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr 126 (710)
..+.+++.|+.+|- |=|+|+--+.+| .+.+.++.++++|+.|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 35679999999885 568999999999 8999999999999998765
No 271
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=21.95 E-value=1.4e+02 Score=32.89 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=37.1
Q ss_pred hHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
=++.|+++.++|++-|++ |.|.|+.=-. .-..+.|+.|++.|+.|=+..
T Consensus 123 ~~e~l~~L~eAGLDEIRf------Hp~~~~~~~~---e~~i~~l~~A~~~g~dvG~Ei 171 (353)
T COG2108 123 TEEALKALAEAGLDEIRF------HPPRPGSKSS---EKYIENLKIAKKYGMDVGVEI 171 (353)
T ss_pred CHHHHHHHHhCCCCeEEe------cCCCcccccc---HHHHHHHHHHHHhCccceeec
Confidence 378899999999999999 6554433222 256788999999999876664
No 272
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=21.85 E-value=1.5e+02 Score=30.55 Aligned_cols=49 Identities=22% Similarity=0.163 Sum_probs=36.6
Q ss_pred HHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 74 l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
-+++|++|+.-|-+ .|..++-.|.-+. ..+.+=.+.|-+.||.||+++|
T Consensus 79 ~~mlkd~G~~wVIl-----GHSERR~~fgEsd-~~i~~K~~~Al~eGl~ViaCIG 127 (247)
T KOG1643|consen 79 AEMLKDLGAEWVIL-----GHSERRHVFGESD-EFIADKTAHALAEGLKVIACIG 127 (247)
T ss_pred HHHHHhCCCCEEEe-----cchhhhhhhCCch-HHHHHHHHHHHHcCCeEEEEec
Confidence 45799999998888 5666666665552 2344556778899999999997
No 273
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.77 E-value=1.6e+02 Score=31.24 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=48.0
Q ss_pred CCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHH-HcCCEEEeecC
Q 005182 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ-QAGLYVHLRIG 128 (710)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~-~~GL~Vilr~G 128 (710)
.+.+.+.=.+..+.+-++|++.|++..+-...+...|..-|.....++++.++.+ +..+-+++|++
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 4557777788999999999999999888776555666666765556666666553 45555677775
No 274
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=21.75 E-value=1e+02 Score=33.71 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=44.6
Q ss_pred chHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCE--E-Eeec
Q 005182 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY--V-HLRI 127 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~--V-ilr~ 127 (710)
.|++.+.+++..|+ +|++.-+=-..|..|+.| +|+.+.+++|+..||- + -|||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesY-----KdVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESY-----KDVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhh-----hhHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 677777777889999887 4888999999999996 3 3666
No 275
>PRK10426 alpha-glucosidase; Provisional
Probab=21.71 E-value=7e+02 Score=30.13 Aligned_cols=63 Identities=21% Similarity=0.356 Sum_probs=43.3
Q ss_pred hHHHHHHHHHcCCCEEEEee-eCCCCCCC----Cc--ceecccc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 005182 70 WPDLIQKAKDGGLDVIQTYV-FWNGHEPT----QG--NYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~tyv-~Wn~hEp~----~G--~fdf~g~--~dl~~fi~la~~~GL~Vilr~GPyi~ 132 (710)
-++.++++|+.||-+=.+++ .|...... .. .|.|+-. -|.+++++..++.|++|++..=|+++
T Consensus 223 v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~ 294 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLA 294 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccC
Confidence 45789999999987655544 36532221 11 1233322 28899999999999999999988874
No 276
>PRK08005 epimerase; Validated
Probab=21.71 E-value=2e+02 Score=29.69 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=37.0
Q ss_pred EeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 59 SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 59 ~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
++|--=..|+. .++++.++|.+.|.+ +-|..+ ++.++|+.++++|+++=|-.
T Consensus 62 DvHLMv~~P~~---~i~~~~~~gad~It~-----H~Ea~~---------~~~~~l~~Ik~~G~k~GlAl 113 (210)
T PRK08005 62 SFHLMVSSPQR---WLPWLAAIRPGWIFI-----HAESVQ---------NPSEILADIRAIGAKAGLAL 113 (210)
T ss_pred EEEeccCCHHH---HHHHHHHhCCCEEEE-----cccCcc---------CHHHHHHHHHHcCCcEEEEE
Confidence 45543334544 567888899999998 455443 67899999999999964444
No 277
>PLN02389 biotin synthase
Probab=21.66 E-value=1.3e+02 Score=33.85 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=33.9
Q ss_pred chHHHHHHHHHcCCCEEEEeeeCCCCCCCCcce-------ecccchhHHHHHHHHHHcCCEE
Q 005182 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-------YFQDRYDLVRFIKLVQQAGLYV 123 (710)
Q Consensus 69 ~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~f-------df~g~~dl~~fi~la~~~GL~V 123 (710)
.=++.++++|++|++.+.. ++ |..|..| +|+ +..+.++.|++.||.|
T Consensus 176 l~~E~l~~LkeAGld~~~~----~L-eTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNH----NL-DTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred CCHHHHHHHHHcCCCEEEe----ee-cCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
Confidence 3478999999999999877 33 3223222 333 5668899999999986
No 278
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.56 E-value=78 Score=34.77 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCEEE-Ee-eeCC---CCCCCCcceecccchhHHHHHHHHHHcCCEE
Q 005182 71 PDLIQKAKDGGLDVIQ-TY-VFWN---GHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~-ty-v~Wn---~hEp~~G~fdf~g~~dl~~fi~la~~~GL~V 123 (710)
++.+++||++|++.+- +. -.-+ .+.-.|++..++ +..+.++.|+++||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 7789999999999874 10 0000 001123333333 4568999999999975
No 279
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=21.49 E-value=5.7e+02 Score=26.50 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=57.3
Q ss_pred CeEEECCEEeEEEEEEeeCCCC---C----------------------ccchHHHHHHHHHcCCCEEEEeeeCC---CCC
Q 005182 44 KAVIINGQKRILISGSIHYPRS---T----------------------PEMWPDLIQKAKDGGLDVIQTYVFWN---GHE 95 (710)
Q Consensus 44 ~~~~idGkp~~i~sG~~Hy~r~---~----------------------~~~W~~~l~k~Ka~G~N~V~tyv~Wn---~hE 95 (710)
.-+.++|.++-+++........ . .+.-.+.++++| .+.+.|=++++|. .++
T Consensus 122 ~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~ 200 (250)
T PF09587_consen 122 AIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIEYENY 200 (250)
T ss_pred EEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCCCCCC
Confidence 3456789999999988764221 0 044667888888 6899999999996 222
Q ss_pred CCCcceecccchhHHHHHHHHHHcCCEEEeecCccc
Q 005182 96 PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (710)
Q Consensus 96 p~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~GPyi 131 (710)
|.+ ..+++.+.+-+.|..+|+.-+|-+
T Consensus 201 p~~---------~q~~~a~~lidaGaDiIiG~HpHv 227 (250)
T PF09587_consen 201 PTP---------EQRELARALIDAGADIIIGHHPHV 227 (250)
T ss_pred CCH---------HHHHHHHHHHHcCCCEEEeCCCCc
Confidence 333 667788888889999999987755
No 280
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=21.45 E-value=1.7e+02 Score=31.05 Aligned_cols=60 Identities=22% Similarity=0.374 Sum_probs=40.7
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcc-eec-ccchhHHHHHHHHHHc-CCEEEeecCc
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YYF-QDRYDLVRFIKLVQQA-GLYVHLRIGP 129 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~-fdf-~g~~dl~~fi~la~~~-GL~Vilr~GP 129 (710)
.++.|.+..+++.+.|++.|++ |..-|.... =++ .....+.++++.+++. ++-|+++.+|
T Consensus 109 ~~~~~~~~a~~~~~~G~d~iel----N~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 109 SKEDYVELARKIERAGAKALEL----NLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE----EcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 6688999999999999999999 665554321 000 0113566777777765 6777777755
No 281
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=21.42 E-value=4e+02 Score=28.85 Aligned_cols=87 Identities=21% Similarity=0.148 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHcCCEEEeecCccccceecCCCCCeecccCCCeEEecCChhHHHHHHHHHHHHHHHHHhccccccCCCc
Q 005182 107 YDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGP 186 (710)
Q Consensus 107 ~dl~~fi~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~i~~~~~~~~~gGp 186 (710)
..+.+.|+.|++.|++|+|-+|- |. |.. . ..++ +..+++.+.|.+.++++.+
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG-----~~-~~~---------~---~~~~---~~~~~fa~sl~~~~~~~g~------- 111 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGG-----AN-GHV---------D---LNHT---AQEDNFVDSIVAIIKEYGF------- 111 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeC-----CC-Ccc---------c---cCCH---HHHHHHHHHHHHHHHHhCC-------
Confidence 36788899999999999999862 11 110 0 1222 3456778888888886543
Q ss_pred eEEeccccccCCccccCCCchHHHHHHHHHHhhhcC
Q 005182 187 IILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLN 222 (710)
Q Consensus 187 II~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 222 (710)
=++.|+=|+.............|.+.|+++-...+
T Consensus 112 -DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~ 146 (312)
T cd02871 112 -DGLDIDLESGSNPLNATPVITNLISALKQLKDHYG 146 (312)
T ss_pred -CeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcC
Confidence 36777778764210000122556666666655544
No 282
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=21.32 E-value=77 Score=34.95 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=28.0
Q ss_pred EeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEee
Q 005182 87 TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 87 tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr 126 (710)
+|+. |-|.|.=-.+.-+ .+.+++++|+++|++||.-
T Consensus 169 i~l~-~p~NPTG~~~s~~---~~~~l~~~a~~~~~~ii~D 204 (388)
T PRK07366 169 MVLS-YPHNPTTAIAPLS---FFQEAVAFCQQHDLVLVHD 204 (388)
T ss_pred EEEe-CCCCCCCccCCHH---HHHHHHHHHHHcCeEEEEe
Confidence 4555 6788876666655 8899999999999988754
No 283
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=21.27 E-value=1.9e+02 Score=30.18 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
++-+++++++|++.|-+. -.| ++ .+.++++.|+++|+..++-.
T Consensus 94 ~~fi~~~~~aG~~giiip-----Dl~------~e---e~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIP-----DLP------PE---EAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred HHHHHHHHHCCCcEEEEC-----CCC------HH---HHHHHHHHHHHcCCcEEEEe
Confidence 556888999999999883 112 12 67899999999999876554
No 284
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=21.20 E-value=1.4e+02 Score=30.39 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=38.0
Q ss_pred CCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcce-ecccchhHHHHHHHHHHc--CCEEEeecCccccc
Q 005182 62 YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-YFQDRYDLVRFIKLVQQA--GLYVHLRIGPYVCA 133 (710)
Q Consensus 62 y~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~f-df~g~~dl~~fi~la~~~--GL~Vilr~GPyi~a 133 (710)
+.|+..++=-..-+.+|+.||.++-.---=..|....=-| ...| +.=+-..|. .-++|+||||..|-
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KG-----EvE~~v~eL~F~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKG-----EVERDVIELDFKHIIILRPGPLLGE 172 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccc-----hhhhhhhhccccEEEEecCcceecc
Confidence 4577888888888999999998875522222332222111 0112 111112222 34689999998764
No 285
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=21.18 E-value=1.1e+02 Score=34.60 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=46.1
Q ss_pred CCCCccchHHHHHHHHHcCCCEEEEeee--CCCCCCCCcceecccchhHHHHHHHHHHcCCEE-EeecCccccceecCCC
Q 005182 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVF--WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV-HLRIGPYVCAEWNYGG 139 (710)
Q Consensus 63 ~r~~~~~W~~~l~k~Ka~G~N~V~tyv~--Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~V-ilr~GPyi~aEw~~GG 139 (710)
|=++++.+.+.++.+|+.|++.+-+.++ .+...++. |.- .....++++++|++.|+.+ +|-+| ||
T Consensus 145 FGi~~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~~~--~~~-a~~~~~~~~~~~~~~g~~l~~ldiG---------GG 212 (394)
T cd06831 145 FGTTLKNCRHLLECAKELDVQIVGVKFHVSSSCKEYQT--YVH-ALSDARCVFDMAEEFGFKMNMLDIG---------GG 212 (394)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEEEECCCCCCCHHH--HHH-HHHHHHHHHHHHHHCCCCCCEEEeC---------CC
Confidence 3358888999999999999999887655 33333332 210 0124467889999988764 67775 88
Q ss_pred CC
Q 005182 140 FP 141 (710)
Q Consensus 140 ~P 141 (710)
+|
T Consensus 213 f~ 214 (394)
T cd06831 213 FT 214 (394)
T ss_pred cC
Confidence 87
No 286
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=21.17 E-value=3e+02 Score=24.88 Aligned_cols=74 Identities=24% Similarity=0.267 Sum_probs=42.5
Q ss_pred cceEEEEEEeecCCCcccccCCCCCeEEEeecc--ceEEEEECC---EEEEEEEccc--CCCe-EEEecceecCCCccEE
Q 005182 478 SDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAG--HALQVFING---QLSGTVYGSL--ENPK-LTFSKNVKLRPGVNKI 549 (710)
Q Consensus 478 tGylwYrt~~~~~~~~~~~~~g~~~~L~l~~~~--d~~~VfVNG---~~vGs~~g~~--~~~~-~~~~~~v~Lk~G~N~L 549 (710)
-+++=|.. |+++.... ...++++.... -...++||| +.+++..-.. .... -++..++.|++|.|+|
T Consensus 31 G~~~~~~~-Vd~~~~g~-----y~~~~~~a~~~~~~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~G~h~i 104 (125)
T PF03422_consen 31 GDWIEYNN-VDVPEAGT-----YTLTIRYANGGGGGTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPAGKHTI 104 (125)
T ss_dssp TTEEEEEE-EEESSSEE-----EEEEEEEEESSSSEEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEESEEEEE
T ss_pred CCEEEEEE-EeeCCCce-----EEEEEEEECCCCCcEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCCCeeEE
Confidence 34555653 55544331 12345555543 378999999 8888774311 1112 1233456788899999
Q ss_pred EEEEeecC
Q 005182 550 SLLSTSVG 557 (710)
Q Consensus 550 ~ILven~G 557 (710)
.|....-+
T Consensus 105 ~l~~~~~~ 112 (125)
T PF03422_consen 105 YLVFNGGD 112 (125)
T ss_dssp EEEESSSS
T ss_pred EEEEECCC
Confidence 88776654
No 287
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=21.16 E-value=2.3e+02 Score=31.68 Aligned_cols=65 Identities=11% Similarity=0.259 Sum_probs=48.0
Q ss_pred EEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 51 QKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 51 kp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
++.++++|..- .....+++..+.+++.|+.++.. +..+|.| +.+ ++++.++++++.+..+|+-.|
T Consensus 32 ~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~~f----~~v~~np---~~~---~v~~~~~~~~~~~~D~IiaiG 96 (383)
T PRK09860 32 TRTLIVTDNML---TKLGMAGDVQKALEERNIFSVIY----DGTQPNP---TTE---NVAAGLKLLKENNCDSVISLG 96 (383)
T ss_pred CEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEe----CCCCCCc---CHH---HHHHHHHHHHHcCCCEEEEeC
Confidence 78888877411 12356788888899999874333 5666666 233 788999999999999999996
No 288
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=21.16 E-value=2e+02 Score=30.49 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
++-+++++++|++.|-+. -+|-+ ...++++.|+++||..++-.
T Consensus 105 e~f~~~~~~aGvdgviip-----Dlp~e---------e~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVA-----DLPLE---------ESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred HHHHHHHHHcCCCEEEEC-----CCChH---------HHHHHHHHHHHCCCcEEEEE
Confidence 567889999999999883 34432 67899999999999866443
No 289
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.11 E-value=1.8e+02 Score=32.08 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 71 ~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.++++++.+.|+..|++.++.+.. ..+...++.|+++|+.|..-+
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~------------~~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA------------DVSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH------------HHHHHHHHHHHHCCCeEEEEE
Confidence 367899999999999998755532 157899999999999987664
No 290
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=21.06 E-value=82 Score=32.44 Aligned_cols=15 Identities=13% Similarity=-0.042 Sum_probs=14.0
Q ss_pred ceEEEEEcCccccee
Q 005182 653 YEQSICINICHILLS 667 (710)
Q Consensus 653 gKG~~wVNG~nlGRY 667 (710)
.+|.|||||++|.|.
T Consensus 55 t~G~i~~~~~dl~~l 69 (223)
T COG2884 55 TRGKILVNGHDLSRL 69 (223)
T ss_pred CCceEEECCeecccc
Confidence 599999999999996
No 291
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=20.83 E-value=1.7e+02 Score=32.52 Aligned_cols=47 Identities=21% Similarity=0.553 Sum_probs=39.8
Q ss_pred hHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeecC
Q 005182 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~G 128 (710)
-++.+..+| |+..++. +..||.| .++ -|.+-+++|+++++..+|-.|
T Consensus 47 ydqV~~~Lk--g~~~~E~----~GVEPNP---~~~---Tv~kaV~i~kee~idflLAVG 93 (384)
T COG1979 47 YDQVVEALK--GIEVIEF----GGVEPNP---RLE---TLMKAVEICKEENIDFLLAVG 93 (384)
T ss_pred HHHHHHHhc--CceEEEe----cCCCCCc---hHH---HHHHHHHHHHHcCceEEEEec
Confidence 466677777 9999998 8999999 334 788999999999999999986
No 292
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=20.64 E-value=1.4e+02 Score=33.78 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=58.8
Q ss_pred ceeEEEec--CeEEECCEEeEEEEEEeeCCCC-CccchHHHHHHHHHcC--CCEEEEeeeCCCCCCCCcceecccc-hhH
Q 005182 36 KASVSYDH--KAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGG--LDVIQTYVFWNGHEPTQGNYYFQDR-YDL 109 (710)
Q Consensus 36 ~~~v~~d~--~~~~idGkp~~i~sG~~Hy~r~-~~~~W~~~l~k~Ka~G--~N~V~tyv~Wn~hEp~~G~fdf~g~-~dl 109 (710)
...|-.|. ..=++||-+ +-.++.+.++- +.+.-++.|++-+..| -..|-| +|+|-.+|. .+|
T Consensus 123 ~dli~~D~lnHASiidG~r--ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt----------egVfSMdGdiApL 190 (388)
T COG0156 123 GDLIFSDELNHASIIDGIR--LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT----------EGVFSMDGDIAPL 190 (388)
T ss_pred CcEEEEechhhhhHHHHHH--hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE----------eccccCCCCcCCH
Confidence 44555553 333778877 66777777775 5577788888766554 455555 899999997 899
Q ss_pred HHHHHHHHHcCCEEEee
Q 005182 110 VRFIKLVQQAGLYVHLR 126 (710)
Q Consensus 110 ~~fi~la~~~GL~Vilr 126 (710)
.+++++|+++|.++++.
T Consensus 191 ~~l~~L~~ky~a~L~VD 207 (388)
T COG0156 191 PELVELAEKYGALLYVD 207 (388)
T ss_pred HHHHHHHHHhCcEEEEE
Confidence 99999999999888765
No 293
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.51 E-value=1.5e+02 Score=31.81 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=38.9
Q ss_pred CCEEeEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCC-CCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 49 NGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWN-GHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 49 dGkp~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn-~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.++.++.....+.| .+++.|++.+.+ +-.+ ..||.+ ++|.+++++++++++.+|+.-
T Consensus 178 ~~~~~v~~H~af~Y-------------l~~~~gl~~~~~-~~~~~~~eps~--------~~l~~l~~~ik~~~v~~If~e 235 (286)
T cd01019 178 KTKPFFVFHDAYGY-------------FEKRYGLTQAGV-FTIDPEIDPGA--------KRLAKIRKEIKEKGATCVFAE 235 (286)
T ss_pred CCCeEEEecccHHH-------------HHHHcCCceeee-ecCCCCCCCCH--------HHHHHHHHHHHHcCCcEEEec
Confidence 45556665566665 578899997764 1111 233333 599999999999999998763
No 294
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=20.47 E-value=2.1e+02 Score=30.45 Aligned_cols=60 Identities=27% Similarity=0.365 Sum_probs=41.6
Q ss_pred CccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcce--ec-ccchhHHHHHHHHHHc-CCEEEeecCc
Q 005182 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY--YF-QDRYDLVRFIKLVQQA-GLYVHLRIGP 129 (710)
Q Consensus 66 ~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~f--df-~g~~dl~~fi~la~~~-GL~Vilr~GP 129 (710)
.++.|.+..++++++|++.|++ |+.-|..... .+ ...+.+.++++.+++. ++-|+++.+|
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iEl----N~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIEL----NISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----ECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 4788999999999999999999 4555543221 12 1124667788888876 7777777654
No 295
>PRK07534 methionine synthase I; Validated
Probab=20.36 E-value=4.1e+02 Score=29.33 Aligned_cols=101 Identities=14% Similarity=0.045 Sum_probs=54.5
Q ss_pred hHHHHHHHHHcCC--CEEEEeeeCCCCC-CCCcceecccchhHHHHHHHHHHc-CCEEEeecCccccceecCCCCCeecc
Q 005182 70 WPDLIQKAKDGGL--DVIQTYVFWNGHE-PTQGNYYFQDRYDLVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGGFPVWLK 145 (710)
Q Consensus 70 W~~~l~k~Ka~G~--N~V~tyv~Wn~hE-p~~G~fdf~g~~dl~~fi~la~~~-GL~Vilr~GPyi~aEw~~GG~P~WL~ 145 (710)
.++.++.+++.|. .+|=+ |-.. |.. -+..++++.... .+.+++.| |.|.|.|..
T Consensus 191 ~~~~~~~~~~~~~~~~avGv----NC~~gp~~---------~~~~l~~~~~~~~~~pl~vyP---------NaG~p~~~~ 248 (336)
T PRK07534 191 PADLADLVEKLGEPPLAFGA----NCGVGASD---------LLRTVLGFTAQGPERPIIAKG---------NAGIPKYVD 248 (336)
T ss_pred HHHHHHHHHhcCCCceEEEe----cCCCCHHH---------HHHHHHHHHHhcCCCeEEEEc---------CCCCcccCC
Confidence 5666667665543 33333 3332 321 235556655443 57788887 678898864
Q ss_pred cCCCeEEecCChh-HHHHHHHHHHHHHHHHHhccccccCCCceEEeccccccCCccccCCCchHHHHHHHHHHhhhc
Q 005182 146 YVPGIEFRTDNGP-FKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL 221 (710)
Q Consensus 146 ~~p~~~~R~~d~~-y~~~~~~~~~~l~~~i~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~ 221 (710)
. ..... .+|. |.+.+++| . ..|=.||+ | |||. +.+|++.|++.....
T Consensus 249 ~--~~~~~-~~p~~~~~~~~~~--------~------~~Ga~iIG-------G----CCGT-tP~hI~~la~~l~~~ 296 (336)
T PRK07534 249 G--HIHYD-GTPELMAEYAVLA--------R------DAGARIIG-------G----CCGT-MPEHLAAMRAALDAR 296 (336)
T ss_pred C--ccccC-CCHHHHHHHHHHH--------H------HcCCcEEe-------e----ecCC-CHHHHHHHHHHHccC
Confidence 2 22222 2443 33333333 2 13445664 3 3454 789999999987653
No 296
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=20.25 E-value=6.6e+02 Score=28.47 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=38.1
Q ss_pred eEEEEEEeeCCCCCccch----HHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 53 RILISGSIHYPRSTPEMW----PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 53 ~~i~sG~~Hy~r~~~~~W----~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
.++++|.+.-...++... .+.++++++.++. +|+...=|.... .+...-++.++.|++|+-.+
T Consensus 42 ~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~GNHD~~~---------~l~~~~~~l~~~gi~vl~~~ 108 (407)
T PRK10966 42 AIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLAGNHDSVA---------TLNESRDLLAFLNTTVIASA 108 (407)
T ss_pred EEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEcCCCCChh---------hhhhHHHHHHHCCcEEEecc
Confidence 567888886444444332 3456677777765 444445554332 24455677789999988554
No 297
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=20.22 E-value=79 Score=34.93 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=31.6
Q ss_pred hHHHHHHHHHcCCCEEE-----EeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEE
Q 005182 70 WPDLIQKAKDGGLDVIQ-----TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (710)
Q Consensus 70 W~~~l~k~Ka~G~N~V~-----tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~V 123 (710)
-++.++++|++|++.+- ++..--.+.-.|++...+ ...+.++.|+++|+.+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 46779999999997664 211111122224433333 4457899999999976
No 298
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=20.15 E-value=2.4e+02 Score=31.14 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=39.7
Q ss_pred EEEEeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccc----hhHHHHHHHHHHcCCE
Q 005182 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR----YDLVRFIKLVQQAGLY 122 (710)
Q Consensus 56 ~sG~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~----~dl~~fi~la~~~GL~ 122 (710)
++-|.++..++ ++.|+.+|++|+|.|++.| ..-.+-.-+.-|+ .++.+.++.++++|+.
T Consensus 87 itiE~nP~~~~----~e~l~~l~~~GvnRiSiGv----QS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 87 ITTEANPNSAT----KAWLKGMKNLGVNRISFGV----QSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred EEEEeCCCCCC----HHHHHHHHHcCCCEEEEec----ccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 45555654444 5789999999999999944 2222222222222 3788899999999985
No 299
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=20.05 E-value=2.2e+02 Score=29.56 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=37.2
Q ss_pred EeeCCCCCccchHHHHHHHHHcCCCEEEEeeeCCCCCCCCcceecccchhHHHHHHHHHHcCCEEEeec
Q 005182 59 SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (710)
Q Consensus 59 ~~Hy~r~~~~~W~~~l~k~Ka~G~N~V~tyv~Wn~hEp~~G~fdf~g~~dl~~fi~la~~~GL~Vilr~ 127 (710)
++|--=..|+.| ++.+.++|.+.|.+ +-|..+ ++.++|+.++++|+++=|-.
T Consensus 66 dvHLMv~~P~~~---i~~~~~~gad~I~~-----H~Ea~~---------~~~~~l~~Ir~~g~k~Glal 117 (223)
T PRK08745 66 DVHLMVEPVDRI---VPDFADAGATTISF-----HPEASR---------HVHRTIQLIKSHGCQAGLVL 117 (223)
T ss_pred EEEeccCCHHHH---HHHHHHhCCCEEEE-----cccCcc---------cHHHHHHHHHHCCCceeEEe
Confidence 556433355554 67788899999999 555443 67899999999999864443
No 300
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=20.01 E-value=89 Score=25.99 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=11.4
Q ss_pred EEECCEEEEEEEc
Q 005182 515 VFINGQLSGTVYG 527 (710)
Q Consensus 515 VfVNG~~vGs~~g 527 (710)
|||||..+|.+..
T Consensus 1 VFlNG~~iG~~~~ 13 (63)
T PF04566_consen 1 VFLNGVWIGIHSD 13 (63)
T ss_dssp EEETTEEEEEESS
T ss_pred CEECCEEEEEEcC
Confidence 7999999999753
Done!