RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 005183
(710 letters)
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 100 bits (248), Expect = 2e-24
Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 14/226 (6%)
Query: 413 KNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTS 472
K E+E + + A+ EEI G + EV +E+ K +G +
Sbjct: 1 KTKEEIEIIEKACEIADKAVMAAI----EEITEGKREREVA---AKVEYLMKMNGAEKPA 53
Query: 473 FDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTARE 532
FDTI SG A+ H + D L ++D GA Y +DITRT+ G P ++
Sbjct: 54 FDTIIASGHRSALPHGVASDKRIERGD---LVVIDLGALYNHYNSDITRTIVVGSPNEKQ 110
Query: 533 KECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALNVHEG 592
+E + VL+ +A P LD+ AR + + G G G L +HE
Sbjct: 111 REIYEIVLEAQKRAVEAAKP-GMTAKELDSIAREIIKEYGYGDYFIHSLGHGVGLEIHEW 169
Query: 593 PQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 638
P+ + T L EGM+++ EPG Y G+RIE+ + + E G
Sbjct: 170 PR---ISQYDETVLKEGMVITIEPGIYIPKLGGVRIEDTVLITENG 212
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 80.9 bits (198), Expect = 1e-17
Identities = 48/258 (18%), Positives = 78/258 (30%), Gaps = 33/258 (12%)
Query: 412 VKNSAELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEF-----RSKQ 465
+K++ E + R A +A + E + + E +VA +
Sbjct: 2 IKSAEEHVMI-----RHGARIADIGGAAVVEALGDQV--PEYEVALHATQAMVRAIADTF 54
Query: 466 SGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF 525
T SG N H K + D + L+ T + RT+
Sbjct: 55 EDVELMDTWTWFQSGINTDGAHNPVTTRKVNKGD---ILSLNCFPMIAGYYTALERTLFL 111
Query: 526 GEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSL-WKIGLDYRHGTGHGVG 584
+ + ++ H A + I P + + L + G GH G
Sbjct: 112 DHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFG 171
Query: 585 AALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDH----AFGIRIENLLYVKEVGTP 640
+ + + R T L GM+VS EP A G R ++L V E
Sbjct: 172 TLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPEGLPGAGGYREHDILIVNEN--- 228
Query: 641 NRFGGVSYLGFEKLTFVP 658
G E +T P
Sbjct: 229 ---------GAENITKFP 237
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 79.7 bits (195), Expect = 3e-17
Identities = 51/248 (20%), Positives = 77/248 (31%), Gaps = 30/248 (12%)
Query: 412 VKNSAELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVD--VADKLLEFRSKQSGF 468
+K +E+E M + A + + I G +V+ V + + R K +
Sbjct: 4 IKTPSEIEKM-----KKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFK 58
Query: 469 LDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEP 528
+ + N ++H P K D GA Y D T GE
Sbjct: 59 GYGGYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSV--DVGAVYQGLYGDAAVTYIVGET 116
Query: 529 TAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALN 588
R KE + + I P G V + R GHGVG
Sbjct: 117 DERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVG--RE 174
Query: 589 VHEGPQ-SISFRYGNMTPLVEGMIVSNEPGYYE-----------------DHAFGIRIEN 630
+HE PQ G L +GM ++ EP E D + E+
Sbjct: 175 LHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEH 234
Query: 631 LLYVKEVG 638
+ + E G
Sbjct: 235 TILITENG 242
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 78.0 bits (191), Expect = 1e-16
Identities = 35/251 (13%), Positives = 72/251 (28%), Gaps = 35/251 (13%)
Query: 412 VKNSAELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSG--- 467
+K ++E M R A LA + +E + G + ++ ++ +
Sbjct: 3 IKTPEDIEKM-----RVAGRLAAEVLEMIEPYVKPGV--STGELDRICNDYIVNEQHAVS 55
Query: 468 --FLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF 525
+ N + H P ++ + +D D ++
Sbjct: 56 ACLGYHGYPKSVCISINEVVCHG--IPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIV 113
Query: 526 GEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLDY-RHGTGHGVG 584
G+PT + + + + P + A + + G R GHG+G
Sbjct: 114 GKPTIMGERLCRITQESLYLALRMVKPGINLREIGAA-IQKFVEAEGFSVVREYCGHGIG 172
Query: 585 AALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY-----------------EDHAFGIR 627
+ E L GM + EP +D + +
Sbjct: 173 RGFH-EEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQ 231
Query: 628 IENLLYVKEVG 638
E+ + V + G
Sbjct: 232 YEHTIVVTDNG 242
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 69.7 bits (169), Expect = 1e-13
Identities = 54/249 (21%), Positives = 91/249 (36%), Gaps = 38/249 (15%)
Query: 416 AELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFD 474
E+ + R A + E+ G + E + + + + G S++
Sbjct: 3 EEIAVL-----RRAGEITAMAHTRAMEKCRPG--MFEYHL-EGEIHHEFNRHGARYPSYN 54
Query: 475 TISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTAREK 533
TI GSG NG I+HY + D L L+D+G +Y DITRT G+ T ++
Sbjct: 55 TIVGSGENGCILHYTENECEMRDGD---LVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 111
Query: 534 ECFTRVLQGHIALDQAIFPQSTPGFV----LDAFARSSLWKIGLDY-----------RHG 578
E + VL+ + P ++ V + + L R
Sbjct: 112 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 171
Query: 579 TGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDHAFGIRIE 629
HG+ L + + + L GM+++ PG Y + GIRIE
Sbjct: 172 FMHGLSHWLGLDVHDVGV-YGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIE 230
Query: 630 NLLYVKEVG 638
+ + + E G
Sbjct: 231 DDIVITETG 239
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 63.2 bits (152), Expect = 9e-12
Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 17/225 (7%)
Query: 417 ELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDT 475
+ E + A +A + + G +++A+ + + + G
Sbjct: 2 DTEKL-----MKAGEIAKKVREKAIKLARPGM--LLLELAESIEKMIMELGGK----PAF 50
Query: 476 ISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKEC 535
N HY P G +V+ +D G D TV G E
Sbjct: 51 PVNLSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEA 110
Query: 536 FTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALNVHEGPQS 595
L I++ +A G ++ R +K + +GH +
Sbjct: 111 AKEALNAAISVARAGVEIKELGKAIENEIRKRGFKP---IVNLSGHKIERYKLHAGISIP 167
Query: 596 ISFRYGNMTPLVEGMIVSNEPGYY--EDHAFGIRIENLLYVKEVG 638
+R + L EG + + EP + + E+ + V++
Sbjct: 168 NIYRPHDNYVLKEGDVFAIEPFATIGARNGIVAQFEHTIIVEKDS 212
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 59.2 bits (142), Expect = 4e-10
Identities = 38/243 (15%), Positives = 68/243 (27%), Gaps = 24/243 (9%)
Query: 412 VKNSAELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVD--VADKLLEFRSKQSGF 468
+ R+AA Q ++ I G + E+ + D + +
Sbjct: 51 QASEEIWNDF-----REAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLN 105
Query: 469 LDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEP 528
+F T A HY P G +V+ + +D G D TV F
Sbjct: 106 AGLAFPTGCSLNNCAA--HYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPK 163
Query: 529 TAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL------DYRHGTGHG 582
+ I G + S +I R+ GH
Sbjct: 164 YDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHS 223
Query: 583 VGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY-------EDHAFGIRIENLLYVK 635
+G H G + G T + EG + + E ++ + E+ + ++
Sbjct: 224 IGQYRI-HAGKTVPIVKGGEATRMEEGEVYAIETFGSTGKGVVDIKGSYTAQFEHTILLR 282
Query: 636 EVG 638
Sbjct: 283 PTC 285
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 56.3 bits (134), Expect = 2e-09
Identities = 40/247 (16%), Positives = 77/247 (31%), Gaps = 27/247 (10%)
Query: 412 VKNSAELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLD 470
VK EL+ + ++ + + ++ G +T ++ + E +
Sbjct: 3 VKTEEELQAL-----KEIGYICAKVRNTMQAATKPG--ITTKELDNIAKELFEEYGAISA 55
Query: 471 TSFDTISGSGANGAIIHYKPEPGKCS-VVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPT 529
D ++ V+ L +D A D + GE
Sbjct: 56 PIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESD 115
Query: 530 AREKECFTRVLQGHIALD-QAIFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALN 588
K+ V + P + + A ++ ++ TGHGVG +L+
Sbjct: 116 DPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLH 175
Query: 589 VHEGPQSISFRYGNMTPLVEGMIVSNEPGYY-----------------EDHAFGIRIENL 631
F + T L EGM+++ EP D +F +IE+
Sbjct: 176 EAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHT 235
Query: 632 LYVKEVG 638
+ V + G
Sbjct: 236 VIVTKDG 242
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 181
Score = 28.9 bits (64), Expect = 1.5
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 186 GGRVGIDPFLFSSDAAEELKEAIAKKNHELVY 217
G G DAA EL + K+ +LVY
Sbjct: 10 GSHSGHREVFS--DAAIELGNELVKRKIDLVY 39
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 183
Score = 28.5 bits (63), Expect = 2.0
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 186 GGRVGIDPFLFSSDAAEELKEAIAKKNHELVY 217
G G DAA +L + +N +LVY
Sbjct: 14 GSSQGKKSSYQ--DAAVDLGNELVSRNIDLVY 43
>d1vqox1 d.29.1.1 (X:7-88) Ribosomal protein L31e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 82
Score = 26.2 bits (58), Expect = 3.5
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 200 AAEELKEAIAK---KNHELVYLYDLNLVDVIWKESRPKPPNKPIRVHALK 246
A ++E +AK + + V L D ++ + W R P+K IRV A +
Sbjct: 23 AMILIREHLAKHFSVDEDAVRL-DPSINEAAWARGRANTPSK-IRVRAAR 70
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 128
Score = 26.8 bits (59), Expect = 4.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 203 ELKEAIAKKNHELVYLYDLNLVDVIWK 229
E+++ ++K HELV D+N V+ +
Sbjct: 15 EIQKVFSEKGHELVLKVDVNGVEELDS 41
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis
[TaxId: 1423]}
Length = 179
Score = 27.4 bits (60), Expect = 5.1
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 186 GGRVGIDPFLFSSDAAEELKEAIAKKNHELVY 217
G G + A EL +A++ LVY
Sbjct: 9 GSNPGGNEAYK--RKAAELGVYMAEQGIGLVY 38
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 26.9 bits (58), Expect = 7.3
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 173 PTTFEWLNDVLAPGGRVGI-DPFLFSSDAAEELKEAI 208
E L L PGG + I +P+ A EE+ +A
Sbjct: 117 AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQAC 153
>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
[TaxId: 303]}
Length = 554
Score = 27.1 bits (60), Expect = 9.5
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 369 AIEKYLTSNNNKKSKTKMHTDTT--GQSGGPAGVFRTSPIA 407
I + LT ++ D T QSG P GVF+T A
Sbjct: 64 KIVETLT---------RLEDDETLLVQSGKPVGVFKTHSNA 95
>d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 430
Score = 27.0 bits (59), Expect = 9.5
Identities = 15/134 (11%), Positives = 41/134 (30%), Gaps = 8/134 (5%)
Query: 316 VTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDP--SSVNAAIMNTYEIAIEKY 373
+ + + N GV + + E + +G + W S A ++ + A++
Sbjct: 63 INTKAVSFIGN-GVVIHL-PGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGL 120
Query: 374 LTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAF--SKAVKNSAELEGMLNSHLRDAAA 431
++++ + TT + GP + + + + E + +
Sbjct: 121 --QEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNLAHQHQS 178
Query: 432 LAQFWVWLEEEIHN 445
+ E
Sbjct: 179 MFPTLEIDVEGQLK 192
>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 545
Score = 27.1 bits (60), Expect = 9.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 380 KKSKTKMHTDTT--GQSGGPAGVFRTSPIA 407
+ ++ D T QSG P VFRT P A
Sbjct: 58 VDTLLRLENDETLLIQSGKPVAVFRTHPDA 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.398
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,656,937
Number of extensions: 126012
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 21
Length of query: 710
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 618
Effective length of database: 1,144,436
Effective search space: 707261448
Effective search space used: 707261448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)