Query 005184
Match_columns 710
No_of_seqs 200 out of 365
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 17:57:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yud_A YTH domain-containing p 100.0 7.9E-54 2.7E-58 415.9 8.6 165 436-615 8-178 (180)
2 2yu6_A YTH domain-containing p 100.0 3.1E-52 1.1E-56 391.0 10.9 138 452-596 4-141 (141)
3 2hd9_A UPF0310 protein PH1033; 96.3 0.0084 2.9E-07 56.3 7.5 125 457-593 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 95.0 0.038 1.3E-06 51.9 6.7 126 456-592 4-147 (147)
5 2eve_A Hypothetical protein ps 44.7 39 0.0013 32.6 6.4 131 457-596 2-152 (157)
6 3eop_A Thymocyte nuclear prote 38.1 29 0.001 34.1 4.4 131 457-594 2-168 (176)
7 2ar1_A Hypothetical protein; s 25.9 1E+02 0.0034 30.2 5.9 75 455-536 18-102 (172)
8 2jvf_A De novo protein M7; tet 11.2 39 0.0013 29.3 -0.8 15 571-585 9-23 (96)
9 3goe_A DNA repair protein RAD6 9.7 3E+02 0.01 24.1 4.2 44 459-508 12-55 (82)
10 2gbs_A Hypothetical protein RP 7.8 3.9E+02 0.013 25.3 4.5 126 457-595 2-137 (145)
No 1
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=7.9e-54 Score=415.95 Aligned_cols=165 Identities=32% Similarity=0.539 Sum_probs=155.3
Q ss_pred cCCCCcccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCCCC
Q 005184 436 SLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 515 (710)
Q Consensus 436 ~~~~~~~qyN~~df~~~y~~ARFFIIKS~nedNIhkSIKyGVWaTTp~nnkKLd~AFrea~ek~~~~pVfLfFSVN~SG~ 515 (710)
...+++++||+.++.. +++|||||||++++|||+||+||||+||++||++|++||+++ .+||||||||+||+
T Consensus 8 ~~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~------~~V~L~FSVn~Sg~ 79 (180)
T 2yud_A 8 VRAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSA------RSVILIFSVRESGK 79 (180)
T ss_dssp CCCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHS------SCEEEEEEETTTSE
T ss_pred hhhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhC------CeEEEEEEeCCCCc
Confidence 4466789999988774 899999999999999999999999999999999999999997 48999999999999
Q ss_pred eeEEEEecCCCCCCCCchhhc------cccCcCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHH
Q 005184 516 FVGLAEMAGPVDFNKNVEYWQ------QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKL 589 (710)
Q Consensus 516 FqG~AeM~SpVDf~ks~d~Wq------qdKw~G~F~VkWi~VkDVPf~~lrHI~N~~NENKPVt~SRDgQEIe~e~G~qL 589 (710)
|||||||+++++++....+|+ +++|+|.|+|+||+++||||..++||+|+|||||||+++||||||++++|++|
T Consensus 80 F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L 159 (180)
T 2yud_A 80 FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 159 (180)
T ss_dssp EEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHH
T ss_pred EEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHH
Confidence 999999999999988888896 46799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccccchhhhHHHHHH
Q 005184 590 IKIFKDHPSKTCILDDFGFYETRQKT 615 (710)
Q Consensus 590 LkIF~~~~~~tSILDDF~~Ye~rek~ 615 (710)
|+||+.+ +++++|+.|+|.
T Consensus 160 ~~lf~~~-------~~~~~~~~~~~~ 178 (180)
T 2yud_A 160 CLLFPPD-------ESIDLYQVIHKM 178 (180)
T ss_dssp HHHSCCC-------SSSCSHHHHHHH
T ss_pred HHhcccC-------cCccHHHHHHhh
Confidence 9999986 589999999875
No 2
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=3.1e-52 Score=391.03 Aligned_cols=138 Identities=28% Similarity=0.551 Sum_probs=132.6
Q ss_pred CCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCC
Q 005184 452 EYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKN 531 (710)
Q Consensus 452 ~y~~ARFFIIKS~nedNIhkSIKyGVWaTTp~nnkKLd~AFrea~ek~~~~pVfLfFSVN~SG~FqG~AeM~SpVDf~ks 531 (710)
...++|||||||+++||||+||+||||+||++||++|++||+++ .+||||||||+||+|||||||++++|+ ..
T Consensus 4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~------~~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~ 76 (141)
T 2yu6_A 4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWES------SIVYLVFSVQGSGHFQGFSRMSSEIGR-EK 76 (141)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHS------SCEEEEEEESSSSEECEEEEECSCSSS-CC
T ss_pred CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcC------CcEEEEEEECCCCeEEEEEEEcccCCC-CC
Confidence 35789999999999999999999999999999999999999998 399999999999999999999999999 55
Q ss_pred chhhccccCcCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHhcC
Q 005184 532 VEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 596 (710)
Q Consensus 532 ~d~WqqdKw~G~F~VkWi~VkDVPf~~lrHI~N~~NENKPVt~SRDgQEIe~e~G~qLLkIF~~~ 596 (710)
..+|++++|+|.|+|+||+++||||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus 77 ~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~~ 141 (141)
T 2yu6_A 77 SQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL 141 (141)
T ss_dssp CCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGTC
T ss_pred CccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhhC
Confidence 67899999999999999999999999999999999999999999999999999999999999874
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=96.29 E-value=0.0084 Score=56.29 Aligned_cols=125 Identities=11% Similarity=0.173 Sum_probs=81.5
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCC--------CCeeEEEEecCCCCC
Q 005184 457 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTS--------GQFVGLAEMAGPVDF 528 (710)
Q Consensus 457 RFFIIKS~nedNIhkSIKyGVWaTTp~nnkKLd~AFrea~ek~~~~pVfLfFSVN~S--------G~FqG~AeM~SpVDf 528 (710)
+|.|+|| +.|++...++.|+|-. .+..+..-++ - .....+||++-+.. ..|.|++++++..-.
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~---m----k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSR---V----KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTT---C----CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHh---C----CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence 6899998 8999999999999977 5554432221 1 23478888887765 799999999985522
Q ss_pred CCCchhhccccC-----cCccceeEEEeecCCCccccccccCCCCC-----CceeecCCCcccchHHHHHHHHHH
Q 005184 529 NKNVEYWQQDKW-----TGCFPVKWHIVKDVPNSLLKHITLENNEN-----KPVTNSRDTQEIKLEQGLKLIKIF 593 (710)
Q Consensus 529 ~ks~d~WqqdKw-----~G~F~VkWi~VkDVPf~~lrHI~N~~NEN-----KPVt~SRDgQEIe~e~G~qLLkIF 593 (710)
+.+ .+|-..+| --...|+++.+..|+++.++. .+.+-.| ..+ .-+--++|..+....||+.+
T Consensus 73 D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~-~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 73 DFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh-hhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 221 12222222 123568888889998887664 3332222 111 12337999999999998764
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=95.05 E-value=0.038 Score=51.94 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=77.7
Q ss_pred ceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEe-----C-CCCCeeEEEEecCCCC--
Q 005184 456 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSV-----N-TSGQFVGLAEMAGPVD-- 527 (710)
Q Consensus 456 ARFFIIKS~nedNIhkSIKyGVWaTTp~nnkKLd~AFrea~ek~~~~pVfLfFSV-----N-~SG~FqG~AeM~SpVD-- 527 (710)
.+|.|+|+- ++++...++.|+|-. .+..+.+-++ - .....+||+.. | .-..|.|++++++..-
T Consensus 4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn~lr~---M----k~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D 74 (147)
T 2p5d_A 4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYKNTINK---V----KVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD 74 (147)
T ss_dssp CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHHHHTT---C----CTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred ccceeeecC-HHHHHHHHHcCeeec-CHHHHHHHHh---C----CCCCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence 479999986 677999999999966 4444332221 1 23467777722 2 3458999999998542
Q ss_pred ---CCCCchhhccccCcCccceeEEEe--ecCCCcccc----ccccCCC-CCCceeecCCCcccchHHHHHHHHH
Q 005184 528 ---FNKNVEYWQQDKWTGCFPVKWHIV--KDVPNSLLK----HITLENN-ENKPVTNSRDTQEIKLEQGLKLIKI 592 (710)
Q Consensus 528 ---f~ks~d~WqqdKw~G~F~VkWi~V--kDVPf~~lr----HI~N~~N-ENKPVt~SRDgQEIe~e~G~qLLkI 592 (710)
|+....|...+..--..+|+|+.. ..||+..|+ +|++.-+ .+.-|..+ -++|..+.-..||++
T Consensus 75 ~t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~~L~r~g--v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 75 SSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSGHLMGKA--MREIPEEDYKLIVGN 147 (147)
T ss_dssp CCCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC--CCCS--EEEECHHHHHHHHTC
T ss_pred CcccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHHHHhcCC--ceECCHHHHHHHHhC
Confidence 222222221222223688999987 888887777 2222211 12224555 899999998888753
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=44.67 E-value=39 Score=32.60 Aligned_cols=131 Identities=14% Similarity=0.316 Sum_probs=75.8
Q ss_pred eEEEEec----CChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCC-----C
Q 005184 457 KFFVIKS----YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGP-----V 526 (710)
Q Consensus 457 RFFIIKS----~nedNIhkSIKyGVWaTTp~nnkKLd~AFrea~ek~~~~pVfLfFSVN-~SG~FqG~AeM~Sp-----V 526 (710)
+|.++|| |+.||+.. -+...|.-..+-..|- -.|+. ..+...||+.-| ....+.|+|++++. .
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqArN--~mr~M----k~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~t 74 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQARN--FLRTM----AEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPT 74 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHHH--HHHHC----CTTCEEEEEECSSSSCEEEEEEEEEEEEEECGG
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecCCcccHHHHH--HHHhc----CCCCEEEEEecCCCCCEEEEEEEEeEccCCCcc
Confidence 4788886 67888887 5557897554422111 11222 123566667666 88999999999974 3
Q ss_pred CCCCCchhhcc------ccCcCccceeEEEe--ecCCCccccccccCCCCCCceee-cC-CCcccchHHHHHHHHHHhcC
Q 005184 527 DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTN-SR-DTQEIKLEQGLKLIKIFKDH 596 (710)
Q Consensus 527 Df~ks~d~Wqq------dKw~G~F~VkWi~V--kDVPf~~lrHI~N~~NENKPVt~-SR-DgQEIe~e~G~qLLkIF~~~ 596 (710)
.|+....||.. -+|. .+.|+-+.. +.|+...+|... ++.+-.-|+. +| --|-|..++-..||+|=.++
T Consensus 75 ~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~~~~ 152 (157)
T 2eve_A 75 ALDPDSHYHDAKATTEKNPWS-ALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILALRLEH 152 (157)
T ss_dssp GGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHHHC--
T ss_pred cccccCcCcCcccCCCCCCEE-EEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHHhhhh
Confidence 45666677732 2453 445555443 445555555332 2333333444 23 34778888888888875544
No 6
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=38.06 E-value=29 Score=34.06 Aligned_cols=131 Identities=17% Similarity=0.246 Sum_probs=76.8
Q ss_pred eEEEEec-------------CChhHHHHH-hhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEE
Q 005184 457 KFFVIKS-------------YSEDDVHKS-IKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAE 521 (710)
Q Consensus 457 RFFIIKS-------------~nedNIhkS-IKyGVWaTTp~nnkKLd~AFrea~ek~~~~pVfLfFSVN-~SG~FqG~Ae 521 (710)
+|.++|| |+.||+... .+.-.|.=-.+-..|-. .|+.+ .....||+--| +--.+.|+|+
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~--mR~Mk----~GD~~fFYHSnck~pgIvGi~e 75 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNF--LRAMK----LGEEAFFYHSNCKEPGIAGLMK 75 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHH--HHHCC----TTCEEEEEECCSSSCEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHH--HHhcC----CCCEEEEEecCCCCCeEEEEEE
Confidence 5778885 677888765 34567886654332211 12221 23455566555 7889999999
Q ss_pred ecCCC-----CCCCCchhhcc------ccCcCccceeEEEe--ecCCCccccccc-------cCCCCCCceeecC-CCcc
Q 005184 522 MAGPV-----DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHIT-------LENNENKPVTNSR-DTQE 580 (710)
Q Consensus 522 M~SpV-----Df~ks~d~Wqq------dKw~G~F~VkWi~V--kDVPf~~lrHI~-------N~~NENKPVt~SR-DgQE 580 (710)
++... .|+....||.. -+|. .+.|+-+.. +-|+...+|... -++.+-.-|+.+| --|-
T Consensus 76 Vv~e~ypD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~P 154 (176)
T 3eop_A 76 IVKEAYPDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQP 154 (176)
T ss_dssp EEEEEEECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEE
T ss_pred EeeccccCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCcee
Confidence 99742 36666677742 2564 466666654 346666666542 1333334444544 3466
Q ss_pred cchHHHHHHHHHHh
Q 005184 581 IKLEQGLKLIKIFK 594 (710)
Q Consensus 581 Ie~e~G~qLLkIF~ 594 (710)
|..++-..||++-+
T Consensus 155 Vt~~ew~~I~~l~~ 168 (176)
T 3eop_A 155 LTQEEFDFVLSLEE 168 (176)
T ss_dssp ECHHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHh
Confidence 77777777777644
No 7
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=25.94 E-value=1e+02 Score=30.19 Aligned_cols=75 Identities=27% Similarity=0.434 Sum_probs=47.4
Q ss_pred CceEEEEec----CChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCC----
Q 005184 455 DAKFFVIKS----YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGP---- 525 (710)
Q Consensus 455 ~ARFFIIKS----~nedNIhkSIKyGVWaTTp~nnkKLd~AFrea~ek~~~~pVfLfFSVN-~SG~FqG~AeM~Sp---- 525 (710)
..+|.++|| |+.||+.. -....|.-..+-..+- -.++. ..+...||+.-| .-..+.|+|++++.
T Consensus 18 ~M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqARN--~mr~M----k~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD 90 (172)
T 2ar1_A 18 DIHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAARN--NMRAM----SVGDKVLFYHSNTKEPGVAGLAEVVRLAYDD 90 (172)
T ss_dssp SCCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHHH--HHHHC----CTTCEEEEEECSSSSCEEEEEEEEEEEEEEC
T ss_pred ccceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHHH--HHHhc----CCCCEEEEEecCCCCCEEEEEEEEeeeccCC
Confidence 347999997 67888887 4446797554432211 11222 123455666555 88999999999984
Q ss_pred -CCCCCCchhhc
Q 005184 526 -VDFNKNVEYWQ 536 (710)
Q Consensus 526 -VDf~ks~d~Wq 536 (710)
..|+....||.
T Consensus 91 ~t~fdp~s~YyD 102 (172)
T 2ar1_A 91 FTALDKTSEYFD 102 (172)
T ss_dssp GGGGCTTSTTCC
T ss_pred cccccccCcccC
Confidence 34556667775
No 8
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=11.19 E-value=39 Score=29.32 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=12.2
Q ss_pred ceeecCCCcccchHH
Q 005184 571 PVTNSRDTQEIKLEQ 585 (710)
Q Consensus 571 PVt~SRDgQEIe~e~ 585 (710)
-|++.||||||+.++
T Consensus 9 tikiqrdgqeieidi 23 (96)
T 2jvf_A 9 TIKIQRDGQEIEIDI 23 (96)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEeeCCeEEEEEE
Confidence 578899999998653
No 9
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=9.75 E-value=3e+02 Score=24.10 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=32.0
Q ss_pred EEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEE
Q 005184 459 FVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLF 508 (710)
Q Consensus 459 FIIKS~nedNIhkSIKyGVWaTTp~nnkKLd~AFrea~ek~~~~pVfLfF 508 (710)
.+++|.--+|++.+|+ ......+|-+||++++..+....|.|+|
T Consensus 12 ~~~~~~~~~dl~f~I~------~~t~v~kLi~ayc~~~~I~~~~~IrllF 55 (82)
T 3goe_A 12 LLLRSSKSEDLRLSIP------VDFTVKDLIKRYCTEVKISFHERIRLEF 55 (82)
T ss_dssp EEEEESSSCCEEEEEE------TTSBHHHHHHHHHHHHTCCCCTTCEEEE
T ss_pred HhhhccCCCCeEEEec------CCCCHHHHHHHHHHHcCCCcCceEEEEE
Confidence 4566666666664443 3455789999999998877777899988
No 10
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=7.78 E-value=3.9e+02 Score=25.35 Aligned_cols=126 Identities=19% Similarity=0.202 Sum_probs=64.2
Q ss_pred eEEEEec----CChhHHHHHhh-cCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCC--CCC
Q 005184 457 KFFVIKS----YSEDDVHKSIK-YSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPV--DFN 529 (710)
Q Consensus 457 RFFIIKS----~nedNIhkSIK-yGVWaTTp~nnkKLd~AFrea~ek~~~~pVfLfFSVN~SG~FqG~AeM~SpV--Df~ 529 (710)
+|.++|| |+.||+...-. .-.|.--.+-..+ .-.++. ..+...||+.-|.-..+.|+|++++.. |..
T Consensus 2 ~YWL~KsEP~~~Siddl~~~~~~~~~WdGVRNyqAr--n~mr~M----k~GD~~ffYHS~~~~gIvGi~eVv~e~ypD~t 75 (145)
T 2gbs_A 2 AYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAK--LHMVAM----RRGDRAFYYHSNEGKEIVGIAEIIREAYPDPT 75 (145)
T ss_dssp CEEEEEECTTTSCHHHHHTTTTTCEECCCCCCHHHH--HHHHHC----CTTCEEEEEETTTTCEEEEEEEEEEEEEECTT
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceeCCcccHHHH--HHHHhc----CCCCEEEEEEeCCCCceEEEEEEEEeccCCCC
Confidence 5888887 56788876332 2459755432211 112222 123566777777999999999999864 433
Q ss_pred CCchhhccccCcCccceeEEEe--ecCCCccccccccCCCCCCceeecC-CCcccchHHHHHHHHHHhc
Q 005184 530 KNVEYWQQDKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTNSR-DTQEIKLEQGLKLIKIFKD 595 (710)
Q Consensus 530 ks~d~WqqdKw~G~F~VkWi~V--kDVPf~~lrHI~N~~NENKPVt~SR-DgQEIe~e~G~qLLkIF~~ 595 (710)
.. ..+|. .+.|+-+.. +.|+...+|.. -++.+-.-|+.+| --|-|..++-..||++-..
T Consensus 76 ~~-----~prw~-~VdV~~v~~~~~pvtL~elK~~-~~L~~m~lvr~~RLSV~pVt~~ew~~I~~l~~~ 137 (145)
T 2gbs_A 76 DA-----SGKFV-CVDIKADKPLKTPVTLAAVKAE-PRLADMALMKYSRLSVQPVTAEEWKLVCKMGGL 137 (145)
T ss_dssp CT-----TSCSE-EEEEEEEEEEEEEEEHHHHHHC-TTGGGSHHHHCTTCSSEEECHHHHHHHHHHTTC
T ss_pred CC-----CCCEE-EEEEEEceecCCcccHHHHhcC-cCcccCeeeeccCCCceeeCHHHHHHHHHhhcc
Confidence 22 22442 344444422 33444444321 0111111222222 2355566666666665443
Done!