Query 005185
Match_columns 710
No_of_seqs 470 out of 2874
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 19:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 5E-113 1E-117 904.6 47.6 565 105-710 1-574 (574)
2 KOG1158 NADP/FAD dependent oxi 100.0 2E-109 4E-114 933.1 47.0 592 99-710 41-645 (645)
3 PRK10953 cysJ sulfite reductas 100.0 4E-105 9E-110 914.5 61.5 534 103-710 60-600 (600)
4 TIGR01931 cysJ sulfite reducta 100.0 8E-103 2E-107 900.0 60.7 534 103-710 57-597 (597)
5 COG0369 CysJ Sulfite reductase 100.0 8.8E-99 2E-103 849.3 51.0 536 103-710 46-587 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 1.6E-77 3.4E-82 664.7 44.7 390 312-710 2-416 (416)
7 cd06203 methionine_synthase_re 100.0 5.5E-76 1.2E-80 649.3 43.1 376 320-710 2-398 (398)
8 cd06207 CyPoR_like NADPH cytoc 100.0 1.2E-75 2.5E-80 644.4 42.6 373 320-710 2-382 (382)
9 cd06202 Nitric_oxide_synthase 100.0 2.3E-75 5E-80 645.5 44.5 381 320-710 2-402 (406)
10 cd06206 bifunctional_CYPOR The 100.0 9.9E-73 2.1E-77 621.6 42.6 370 319-710 1-384 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 3.7E-70 7.9E-75 595.7 38.0 350 320-710 2-360 (360)
12 PRK06214 sulfite reductase; Pr 100.0 1.8E-69 3.9E-74 608.4 40.9 365 306-710 159-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 4.1E-46 8.8E-51 379.7 18.7 212 309-527 2-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 7E-38 1.5E-42 339.3 27.8 268 309-710 84-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 3E-35 6.5E-40 308.6 23.5 228 476-710 31-267 (267)
16 cd06201 SiR_like2 Cytochrome p 100.0 8.3E-33 1.8E-37 293.4 30.3 186 492-710 100-289 (289)
17 cd06200 SiR_like1 Cytochrome p 100.0 1.4E-33 3E-38 292.6 20.3 209 476-710 31-245 (245)
18 PLN03116 ferredoxin--NADP+ red 100.0 2.6E-33 5.5E-38 299.8 21.4 208 491-710 80-307 (307)
19 PRK09004 FMN-binding protein M 100.0 2.5E-33 5.3E-38 267.4 16.5 144 104-260 1-146 (146)
20 TIGR03224 benzo_boxA benzoyl-C 100.0 8E-32 1.7E-36 298.3 30.1 265 309-710 136-411 (411)
21 PRK05723 flavodoxin; Provision 100.0 5E-33 1.1E-37 266.2 16.4 147 105-261 1-150 (151)
22 cd06208 CYPOR_like_FNR These f 100.0 1.7E-32 3.6E-37 290.9 21.3 220 478-710 42-286 (286)
23 PRK08105 flavodoxin; Provision 100.0 8.9E-33 1.9E-37 264.4 16.9 145 104-260 1-147 (149)
24 PF00258 Flavodoxin_1: Flavodo 99.9 9E-27 2E-31 221.4 9.3 138 109-252 1-143 (143)
25 PRK07308 flavodoxin; Validated 99.9 4.8E-24 1E-28 203.8 16.0 140 104-256 1-142 (146)
26 cd00322 FNR_like Ferredoxin re 99.9 3E-24 6.6E-29 218.3 14.7 185 476-681 22-214 (223)
27 PRK10926 ferredoxin-NADP reduc 99.9 2.3E-24 5.1E-29 224.0 13.8 183 477-680 31-228 (248)
28 cd06188 NADH_quinone_reductase 99.9 1.6E-24 3.4E-29 229.6 11.7 174 492-681 86-272 (283)
29 cd06189 flavin_oxioreductase N 99.9 4.9E-24 1.1E-28 218.0 13.9 180 475-680 24-212 (224)
30 cd06211 phenol_2-monooxygenase 99.9 6.6E-24 1.4E-28 219.1 12.2 181 476-681 35-227 (238)
31 PRK08051 fre FMN reductase; Va 99.9 6.1E-24 1.3E-28 218.7 11.3 180 476-681 29-218 (232)
32 PRK13289 bifunctional nitric o 99.9 1.8E-23 3.8E-28 232.2 15.1 181 477-680 185-380 (399)
33 PRK07609 CDP-6-deoxy-delta-3,4 99.9 1.3E-23 2.9E-28 228.1 13.8 178 477-680 132-320 (339)
34 cd06210 MMO_FAD_NAD_binding Me 99.9 1E-23 2.3E-28 217.1 12.0 180 476-680 34-223 (236)
35 PRK05464 Na(+)-translocating N 99.9 2E-23 4.3E-28 232.2 14.8 177 490-680 208-395 (409)
36 cd06190 T4MO_e_transfer_like T 99.9 2.9E-23 6.3E-28 213.3 14.2 182 476-680 23-218 (232)
37 cd06195 FNR1 Ferredoxin-NADP+ 99.9 1.5E-23 3.2E-28 216.9 11.7 185 477-682 25-225 (241)
38 cd06209 BenDO_FAD_NAD Benzoate 99.9 3.9E-23 8.5E-28 211.8 14.5 178 476-680 30-215 (228)
39 TIGR01941 nqrF NADH:ubiquinone 99.9 3.5E-23 7.6E-28 229.9 15.0 177 490-680 204-391 (405)
40 cd06187 O2ase_reductase_like T 99.9 2.6E-23 5.6E-28 212.3 12.3 178 477-680 24-212 (224)
41 cd06191 FNR_iron_sulfur_bindin 99.9 4.3E-23 9.4E-28 211.9 14.0 183 477-680 28-219 (231)
42 PRK11872 antC anthranilate dio 99.9 5E-23 1.1E-27 223.6 15.0 179 476-681 136-324 (340)
43 PRK10684 HCP oxidoreductase, N 99.9 5.5E-23 1.2E-27 222.7 14.5 181 477-681 37-226 (332)
44 cd06212 monooxygenase_like The 99.9 3.5E-23 7.7E-28 212.7 12.2 180 476-681 29-220 (232)
45 PRK06703 flavodoxin; Provision 99.9 3E-22 6.4E-27 192.5 16.9 146 104-262 1-149 (151)
46 cd06194 FNR_N-term_Iron_sulfur 99.9 9E-23 2E-27 208.2 13.2 180 476-680 23-209 (222)
47 PRK08345 cytochrome-c3 hydroge 99.9 1E-22 2.2E-27 216.3 13.9 177 477-681 38-235 (289)
48 PRK12359 flavodoxin FldB; Prov 99.9 5E-22 1.1E-26 193.8 17.3 144 105-263 1-171 (172)
49 PRK05713 hypothetical protein; 99.9 8.1E-23 1.8E-27 219.5 11.4 172 477-680 119-296 (312)
50 cd06184 flavohem_like_fad_nad_ 99.9 4.8E-22 1E-26 206.2 14.7 177 477-680 37-231 (247)
51 cd06215 FNR_iron_sulfur_bindin 99.9 4.7E-22 1E-26 204.0 13.8 181 477-680 28-219 (231)
52 KOG1160 Fe-S oxidoreductase [E 99.9 4.9E-22 1.1E-26 209.2 14.0 142 106-262 48-194 (601)
53 cd06213 oxygenase_e_transfer_s 99.9 6.1E-22 1.3E-26 202.9 14.2 175 477-680 28-215 (227)
54 cd06196 FNR_like_1 Ferredoxin 99.9 6E-22 1.3E-26 201.6 12.3 175 476-681 27-209 (218)
55 cd06221 sulfite_reductase_like 99.9 9.8E-22 2.1E-26 204.9 13.5 178 476-681 27-213 (253)
56 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 1.1E-21 2.4E-26 214.3 14.0 185 476-681 32-230 (352)
57 cd06216 FNR_iron_sulfur_bindin 99.9 7.7E-22 1.7E-26 204.3 11.4 178 477-682 46-234 (243)
58 cd06214 PA_degradation_oxidore 99.9 2E-21 4.3E-26 200.7 14.3 184 476-680 32-228 (241)
59 cd06217 FNR_iron_sulfur_bindin 99.9 5.8E-22 1.3E-26 203.8 10.1 179 477-680 31-223 (235)
60 PRK08221 anaerobic sulfite red 99.9 2E-21 4.4E-26 203.6 13.2 176 477-681 33-215 (263)
61 PTZ00274 cytochrome b5 reducta 99.9 1.9E-21 4E-26 208.9 12.9 181 476-676 81-281 (325)
62 cd06198 FNR_like_3 NAD(P) bind 99.9 2.6E-21 5.6E-26 196.7 11.7 174 476-680 22-203 (216)
63 COG1018 Hmp Flavodoxin reducta 99.9 6.5E-21 1.4E-25 198.9 14.8 180 477-683 35-221 (266)
64 TIGR02911 sulfite_red_B sulfit 99.8 5.7E-21 1.2E-25 200.0 13.5 175 477-680 31-212 (261)
65 cd06183 cyt_b5_reduct_like Cyt 99.8 8.8E-21 1.9E-25 194.7 13.9 182 476-680 28-224 (234)
66 cd06218 DHOD_e_trans FAD/NAD b 99.8 7.4E-21 1.6E-25 197.5 13.4 168 477-681 25-203 (246)
67 PRK09271 flavodoxin; Provision 99.8 2E-20 4.4E-25 181.6 15.6 142 105-260 1-147 (160)
68 PTZ00319 NADH-cytochrome B5 re 99.8 8.9E-21 1.9E-25 202.4 13.3 190 477-680 64-290 (300)
69 PRK06756 flavodoxin; Provision 99.8 8.1E-20 1.8E-24 175.0 16.1 137 104-253 1-137 (148)
70 cd06185 PDR_like Phthalate dio 99.8 4.4E-20 9.6E-25 186.8 14.1 170 476-681 25-199 (211)
71 TIGR01752 flav_long flavodoxin 99.8 1.3E-19 2.7E-24 177.2 15.6 140 106-260 1-166 (167)
72 TIGR01754 flav_RNR ribonucleot 99.8 8.5E-20 1.8E-24 173.2 13.6 136 105-256 1-139 (140)
73 COG0543 UbiB 2-polyprenylpheno 99.8 8.8E-20 1.9E-24 189.9 13.7 174 476-681 35-215 (252)
74 COG2871 NqrF Na+-transporting 99.8 9.1E-20 2E-24 183.3 11.8 182 491-686 210-402 (410)
75 TIGR01753 flav_short flavodoxi 99.8 2.7E-19 5.8E-24 169.0 14.3 135 107-255 1-138 (140)
76 PRK00054 dihydroorotate dehydr 99.8 9E-20 2E-24 189.8 11.9 165 476-680 31-203 (250)
77 cd06197 FNR_like_2 FAD/NAD(P) 99.8 1.3E-19 2.8E-24 185.1 11.8 144 492-679 60-211 (220)
78 cd06192 DHOD_e_trans_like FAD/ 99.8 2.1E-19 4.5E-24 186.2 12.7 168 477-681 25-201 (243)
79 cd06220 DHOD_e_trans_like2 FAD 99.8 2.6E-19 5.5E-24 184.5 12.9 164 476-681 23-190 (233)
80 PRK06222 ferredoxin-NADP(+) re 99.8 1.5E-19 3.3E-24 191.3 10.7 168 477-680 28-203 (281)
81 COG4097 Predicted ferric reduc 99.8 6.9E-19 1.5E-23 183.6 13.6 162 489-680 259-423 (438)
82 PLN02252 nitrate reductase [NA 99.8 4.5E-19 9.7E-24 211.5 13.3 190 477-680 665-878 (888)
83 cd06219 DHOD_e_trans_like1 FAD 99.8 4.6E-19 9.9E-24 184.3 11.4 170 476-679 26-201 (248)
84 PRK05802 hypothetical protein; 99.8 3.9E-19 8.4E-24 191.0 9.2 165 478-680 96-276 (320)
85 COG0716 FldA Flavodoxins [Ener 99.8 8.6E-18 1.9E-22 161.6 15.9 143 104-259 1-150 (151)
86 KOG0534 NADH-cytochrome b-5 re 99.8 8.1E-18 1.8E-22 174.9 15.9 179 477-679 82-275 (286)
87 PRK09267 flavodoxin FldA; Vali 99.8 1.2E-17 2.6E-22 163.5 16.0 142 104-260 1-167 (169)
88 PTZ00306 NADH-dependent fumara 99.8 2.8E-18 6E-23 212.5 12.5 183 477-681 948-1152(1167)
89 PF00175 NAD_binding_1: Oxidor 99.7 1.2E-17 2.6E-22 150.8 8.7 104 564-675 1-109 (109)
90 PRK12778 putative bifunctional 99.7 6.6E-17 1.4E-21 193.2 11.6 168 477-680 28-203 (752)
91 cd06193 siderophore_interactin 99.7 8E-17 1.7E-21 166.2 8.3 153 491-679 63-219 (235)
92 PRK12779 putative bifunctional 99.6 8.6E-16 1.9E-20 185.8 14.2 178 477-680 677-869 (944)
93 cd06186 NOX_Duox_like_FAD_NADP 99.6 8E-16 1.7E-20 155.6 10.7 166 476-679 24-197 (210)
94 TIGR00333 nrdI ribonucleoside- 99.6 1.9E-15 4.1E-20 139.3 9.4 92 109-227 1-93 (125)
95 PRK02551 flavoprotein NrdI; Pr 99.6 1.2E-14 2.6E-19 138.5 10.8 138 104-256 1-146 (154)
96 PRK11921 metallo-beta-lactamas 99.6 1.7E-14 3.6E-19 160.0 13.4 146 102-259 245-392 (394)
97 PRK12775 putative trifunctiona 99.6 6.6E-15 1.4E-19 179.6 10.7 169 477-680 28-203 (1006)
98 PRK05452 anaerobic nitric oxid 99.5 3.9E-14 8.4E-19 160.2 13.3 146 103-261 250-397 (479)
99 PRK05569 flavodoxin; Provision 99.5 1.5E-13 3.1E-18 130.5 13.1 116 104-235 1-117 (141)
100 PRK05568 flavodoxin; Provision 99.5 1.4E-13 3E-18 130.7 12.8 114 104-235 1-116 (142)
101 PRK03600 nrdI ribonucleotide r 99.5 1.9E-13 4E-18 128.1 11.5 121 106-258 2-130 (134)
102 PLN02844 oxidoreductase/ferric 99.3 5.4E-12 1.2E-16 147.3 12.1 179 476-666 338-535 (722)
103 PLN02292 ferric-chelate reduct 99.3 7.6E-12 1.6E-16 145.7 12.7 174 478-666 353-546 (702)
104 PRK06242 flavodoxin; Provision 99.3 1.4E-11 3.1E-16 118.0 11.3 108 105-236 1-109 (150)
105 PLN02631 ferric-chelate reduct 99.3 9.9E-12 2.1E-16 144.5 9.6 146 475-634 333-492 (699)
106 PRK03767 NAD(P)H:quinone oxido 99.1 8E-10 1.7E-14 111.3 13.3 126 104-233 1-141 (200)
107 TIGR01755 flav_wrbA NAD(P)H:qu 99.1 9.6E-10 2.1E-14 110.5 13.3 125 106-233 2-140 (197)
108 PRK11104 hemG protoporphyrinog 99.1 3.6E-10 7.8E-15 111.6 9.6 87 105-207 1-87 (177)
109 PRK07116 flavodoxin; Provision 99.1 1E-09 2.2E-14 106.6 11.3 133 104-256 2-158 (160)
110 PF07972 Flavodoxin_NdrI: NrdI 99.0 1.1E-09 2.4E-14 100.5 7.2 95 109-225 1-100 (122)
111 COG0426 FpaA Uncharacterized f 99.0 3E-09 6.5E-14 114.9 11.3 117 105-235 247-363 (388)
112 KOG3378 Globins and related he 98.9 5.6E-10 1.2E-14 112.6 1.4 176 476-683 180-371 (385)
113 PF12724 Flavodoxin_5: Flavodo 98.9 2.1E-08 4.5E-13 95.5 11.5 86 108-209 1-86 (143)
114 COG1780 NrdI Protein involved 98.8 3.5E-08 7.6E-13 90.5 9.2 124 106-260 2-133 (141)
115 PF08030 NAD_binding_6: Ferric 98.8 1.8E-08 3.8E-13 97.0 7.8 73 561-633 3-78 (156)
116 PF03358 FMN_red: NADPH-depend 98.7 1.6E-07 3.6E-12 89.9 11.0 124 105-234 1-141 (152)
117 PF12641 Flavodoxin_3: Flavodo 98.6 2.7E-07 5.9E-12 89.4 9.4 96 108-227 1-98 (160)
118 COG4635 HemG Flavodoxin [Energ 98.4 4E-07 8.7E-12 85.7 6.7 88 105-207 1-88 (175)
119 PF12682 Flavodoxin_4: Flavodo 98.3 2.1E-06 4.4E-11 83.1 9.6 132 106-256 1-156 (156)
120 PRK10569 NAD(P)H-dependent FMN 98.2 5.7E-05 1.2E-09 75.6 15.8 120 105-233 1-133 (191)
121 PRK06934 flavodoxin; Provision 98.1 2.9E-05 6.4E-10 78.9 12.9 134 105-256 60-217 (221)
122 KOG0039 Ferric reductase, NADH 98.1 1.4E-05 3E-10 94.0 10.4 132 477-617 382-536 (646)
123 PRK00170 azoreductase; Reviewe 98.0 0.00011 2.4E-09 73.7 15.3 156 104-261 1-196 (201)
124 PRK01355 azoreductase; Reviewe 98.0 0.0002 4.4E-09 72.1 15.6 159 104-263 1-195 (199)
125 TIGR03567 FMN_reduc_SsuE FMN r 98.0 0.00021 4.5E-09 70.2 14.9 121 106-235 1-134 (171)
126 PRK06567 putative bifunctional 97.9 2.5E-05 5.5E-10 93.8 8.5 79 477-574 819-908 (1028)
127 PRK09739 hypothetical protein; 97.9 0.00032 6.9E-09 70.6 15.0 157 104-263 3-197 (199)
128 TIGR03566 FMN_reduc_MsuE FMN r 97.8 0.00037 8.1E-09 68.6 13.9 120 106-233 1-135 (174)
129 PF02525 Flavodoxin_2: Flavodo 97.8 0.00048 1E-08 69.2 13.8 154 105-260 1-199 (199)
130 PRK13556 azoreductase; Provisi 97.7 0.0011 2.4E-08 67.1 16.3 156 104-261 1-202 (208)
131 COG0655 WrbA Multimeric flavod 97.4 0.0016 3.4E-08 66.0 11.4 122 106-232 5-147 (207)
132 PF00970 FAD_binding_6: Oxidor 97.0 0.00019 4.1E-09 63.5 0.2 63 476-553 29-98 (99)
133 TIGR02690 resist_ArsH arsenica 96.9 0.047 1E-06 55.8 17.0 128 101-233 23-161 (219)
134 PRK04930 glutathione-regulated 96.8 0.059 1.3E-06 53.6 16.5 159 102-264 3-179 (184)
135 PRK13555 azoreductase; Provisi 96.6 0.11 2.3E-06 52.9 16.8 128 104-232 1-174 (208)
136 COG2375 ViuB Siderophore-inter 95.5 0.15 3.3E-06 53.2 11.8 163 489-691 84-250 (265)
137 COG0431 Predicted flavoprotein 94.6 0.34 7.4E-06 48.1 11.2 122 105-234 1-135 (184)
138 PRK00871 glutathione-regulated 94.4 0.92 2E-05 44.8 13.5 152 107-262 2-169 (176)
139 KOG3135 1,4-benzoquinone reduc 93.3 0.35 7.5E-06 46.5 7.8 101 104-208 1-116 (203)
140 COG2249 MdaB Putative NADPH-qu 91.8 3.1 6.8E-05 41.6 12.8 158 105-263 1-187 (189)
141 KOG1160 Fe-S oxidoreductase [E 89.1 0.43 9.2E-06 52.5 4.2 186 57-256 314-511 (601)
142 cd06182 CYPOR_like NADPH cytoc 88.4 0.55 1.2E-05 49.5 4.5 42 320-361 2-44 (267)
143 KOG0560 Sulfite reductase (fer 88.3 0.19 4.2E-06 55.6 1.0 62 203-264 1-70 (638)
144 PRK02261 methylaspartate mutas 82.4 39 0.00085 31.9 13.4 130 105-257 2-134 (137)
145 TIGR01501 MthylAspMutase methy 69.7 99 0.0021 29.2 12.2 128 108-255 3-130 (134)
146 PLN03116 ferredoxin--NADP+ red 68.0 10 0.00023 40.7 6.1 51 310-361 19-69 (307)
147 cd06208 CYPOR_like_FNR These f 67.3 11 0.00025 39.9 6.2 50 310-360 3-52 (286)
148 cd02072 Glm_B12_BD B12 binding 66.6 72 0.0016 29.9 10.4 113 109-237 2-116 (128)
149 COG1182 AcpD Acyl carrier prot 59.8 2E+02 0.0044 29.1 13.4 128 104-232 1-171 (202)
150 cd05566 PTS_IIB_galactitol PTS 55.6 36 0.00078 29.1 6.1 29 105-133 1-29 (89)
151 TIGR00640 acid_CoA_mut_C methy 53.0 93 0.002 29.1 8.9 112 106-237 2-113 (132)
152 KOG4530 Predicted flavoprotein 52.7 32 0.0007 33.2 5.6 54 156-211 83-136 (199)
153 cd05563 PTS_IIB_ascorbate PTS_ 49.7 44 0.00095 28.3 5.7 40 106-145 1-40 (86)
154 cd02067 B12-binding B12 bindin 48.2 2E+02 0.0043 25.8 10.1 109 109-237 2-110 (119)
155 PRK10310 PTS system galactitol 45.4 37 0.0008 29.8 4.6 30 105-134 3-32 (94)
156 cd00578 L-fuc_L-ara-isomerases 43.3 3.3E+02 0.0072 30.9 13.2 129 106-255 2-151 (452)
157 TIGR02667 moaB_proteo molybden 42.6 20 0.00043 34.9 2.7 57 196-252 2-58 (163)
158 PF08021 FAD_binding_9: Sidero 42.2 14 0.00031 33.8 1.6 52 489-552 64-117 (117)
159 TIGR01917 gly_red_sel_B glycin 39.0 2.4E+02 0.0053 31.8 10.5 98 116-264 319-421 (431)
160 PF08357 SEFIR: SEFIR domain; 38.9 78 0.0017 29.7 6.2 62 105-168 1-67 (150)
161 PF04689 S1FA: DNA binding pro 38.8 44 0.00095 27.1 3.5 25 55-79 18-43 (69)
162 PRK09622 porA pyruvate flavodo 37.5 2.9E+02 0.0062 31.1 11.2 109 104-223 268-382 (407)
163 PRK05907 hypothetical protein; 35.7 3.6E+02 0.0078 29.1 11.2 126 106-261 19-151 (311)
164 PRK15083 PTS system mannitol-s 34.8 1.6E+02 0.0036 35.1 9.2 39 104-143 378-416 (639)
165 TIGR00853 pts-lac PTS system, 34.3 61 0.0013 28.5 4.2 30 104-134 3-32 (95)
166 cd00133 PTS_IIB PTS_IIB: subun 34.0 67 0.0015 26.2 4.3 28 106-133 1-28 (84)
167 PRK05928 hemD uroporphyrinogen 33.6 2.1E+02 0.0046 28.8 8.9 56 155-233 48-103 (249)
168 PF02826 2-Hacid_dh_C: D-isome 32.6 69 0.0015 31.3 4.8 35 192-234 30-64 (178)
169 PF03908 Sec20: Sec20; InterP 32.5 43 0.00093 29.2 2.9 18 59-76 74-91 (92)
170 PRK09548 PTS system ascorbate- 32.4 1.5E+02 0.0033 34.9 8.1 45 103-147 505-549 (602)
171 PF00970 FAD_binding_6: Oxidor 32.2 1.1E+02 0.0023 26.4 5.5 38 318-360 2-41 (99)
172 PF08022 FAD_binding_8: FAD-bi 31.6 16 0.00034 32.7 0.0 47 475-532 28-82 (105)
173 TIGR01918 various_sel_PB selen 31.5 3.2E+02 0.007 30.8 10.0 77 163-263 339-420 (431)
174 cd02071 MM_CoA_mut_B12_BD meth 31.3 3.4E+02 0.0074 24.6 8.9 109 109-238 2-111 (122)
175 cd05567 PTS_IIB_mannitol PTS_I 30.1 91 0.002 26.7 4.5 41 105-145 1-41 (87)
176 PF04954 SIP: Siderophore-inte 29.6 1.6E+02 0.0034 26.8 6.3 97 561-679 3-101 (119)
177 cd05009 SIS_GlmS_GlmD_2 SIS (S 29.0 1.9E+02 0.0041 26.8 7.0 71 107-188 17-87 (153)
178 PF06283 ThuA: Trehalose utili 28.3 1.7E+02 0.0036 29.5 6.9 75 106-188 1-80 (217)
179 cd05211 NAD_bind_Glu_Leu_Phe_V 28.1 83 0.0018 32.1 4.6 32 194-233 19-50 (217)
180 cd06200 SiR_like1 Cytochrome p 27.9 1.1E+02 0.0024 31.6 5.5 36 326-361 8-44 (245)
181 cd01075 NAD_bind_Leu_Phe_Val_D 27.8 1E+02 0.0023 30.8 5.2 33 193-233 23-55 (200)
182 COG3414 SgaB Phosphotransferas 27.7 1.7E+02 0.0036 25.8 5.7 58 104-170 1-58 (93)
183 COG1587 HemD Uroporphyrinogen- 27.3 1.8E+02 0.004 30.0 7.1 56 156-234 172-227 (248)
184 cd00758 MoCF_BD MoCF_BD: molyb 27.0 42 0.0009 31.3 2.0 53 200-252 1-55 (133)
185 PRK09590 celB cellobiose phosp 26.0 1E+02 0.0022 27.7 4.2 30 104-134 1-30 (104)
186 cd05564 PTS_IIB_chitobiose_lic 25.5 1E+02 0.0023 27.0 4.2 86 106-215 1-86 (96)
187 PRK07168 bifunctional uroporph 25.4 2E+02 0.0043 33.1 7.4 89 120-232 261-351 (474)
188 PRK05752 uroporphyrinogen-III 25.2 3.9E+02 0.0084 27.6 9.1 57 155-235 51-107 (255)
189 cd06578 HemD Uroporphyrinogen- 25.1 5.5E+02 0.012 25.4 10.1 58 155-235 45-102 (239)
190 PLN02928 oxidoreductase family 25.0 2.2E+02 0.0048 31.2 7.5 33 194-234 155-187 (347)
191 PRK13608 diacylglycerol glucos 24.3 1.2E+02 0.0025 33.7 5.3 41 103-143 4-45 (391)
192 PF02878 PGM_PMM_I: Phosphoglu 24.1 2E+02 0.0043 26.7 6.1 62 104-170 40-101 (137)
193 cd07371 2A5CPDO_AB The alpha a 24.1 3.2E+02 0.007 28.7 8.3 104 118-228 86-205 (268)
194 COG4123 Predicted O-methyltran 24.0 2.4E+02 0.0052 29.5 7.0 19 559-577 45-63 (248)
195 cd06578 HemD Uroporphyrinogen- 23.6 3.8E+02 0.0082 26.6 8.6 44 177-235 183-226 (239)
196 PHA03164 hypothetical protein; 23.2 2.2E+02 0.0048 24.0 5.2 25 43-67 45-73 (88)
197 cd05568 PTS_IIB_bgl_like PTS_I 22.3 46 0.001 27.8 1.3 27 106-132 2-28 (85)
198 cd06268 PBP1_ABC_transporter_L 21.8 7.3E+02 0.016 24.9 10.5 96 104-214 135-230 (298)
199 PF11132 SplA: Transcriptional 21.8 59 0.0013 27.2 1.6 16 348-363 5-20 (75)
200 PRK09189 uroporphyrinogen-III 21.5 3.4E+02 0.0073 27.7 7.8 26 196-234 73-98 (240)
201 cd06212 monooxygenase_like The 21.5 1.7E+02 0.0037 29.5 5.5 40 317-361 2-42 (232)
202 cd01391 Periplasmic_Binding_Pr 21.4 6.3E+02 0.014 24.5 9.6 12 219-230 195-206 (269)
203 PRK08811 uroporphyrinogen-III 21.0 5.3E+02 0.011 27.0 9.2 99 104-234 18-118 (266)
204 COG1587 HemD Uroporphyrinogen- 20.8 4.5E+02 0.0097 27.1 8.5 60 154-236 45-104 (248)
205 PRK15438 erythronate-4-phospha 20.7 2.2E+02 0.0048 31.7 6.5 67 157-234 77-144 (378)
206 KOG0025 Zn2+-binding dehydroge 20.7 55 0.0012 34.9 1.6 63 346-419 95-160 (354)
207 PF11074 DUF2779: Domain of un 20.5 1.1E+02 0.0023 28.7 3.4 54 419-474 54-117 (130)
208 PF09651 Cas_APE2256: CRISPR-a 20.4 1.5E+02 0.0033 27.8 4.4 34 107-142 24-57 (136)
209 cd07373 2A5CPDO_A The alpha su 20.3 3.6E+02 0.0078 28.4 7.8 87 118-211 89-179 (271)
210 TIGR00177 molyb_syn molybdenum 20.2 62 0.0013 30.6 1.8 54 200-253 2-64 (144)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=5.4e-113 Score=904.58 Aligned_cols=565 Identities=34% Similarity=0.601 Sum_probs=495.6
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (710)
++++|+||||||||+.+|+.|.+++.+++. .+.|..+|+|++ ++|.+..++||+|||+|+|++|+||+.||+
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~~~--~~~V~s~Deyd~------~~ll~~~~vvFVcSTTGqGe~P~Nmk~~Wr 72 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHRRGL--QCLVMSMDEYDV------EKLLDERLVVFVCSTTGQGEEPDNMKKFWR 72 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHhccC--CceEeeccccCH------hHhccCceEEEEEecCCCCCCCccHHHHHH
Confidence 478999999999999999999999998874 467899999996 678999999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHHHHHHHHh
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDN 262 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~ 262 (710)
+|...+.+...|++++|||||||||+|++||.++|+++++|.+|||+.++++|+|||+. +++..|..|...+|..|..
T Consensus 73 fL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~ 152 (574)
T KOG1159|consen 73 FLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKG 152 (574)
T ss_pred HHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 99998888899999999999999999999999999999999999999999999999965 7999999999999999998
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCcc--ccCCCCeeEEEEeeecccCCCCCCcEEEEEE
Q 005185 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAV--YDAQHPCRSNVAVRKELHTPSSDRSCTHLEF 340 (710)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~ 340 (710)
+.....+......+ ....+.|++-....... . ..+... ...+-| ++++.|+++|+.++.+.++|++|
T Consensus 153 i~~p~~~~t~l~~~-~~~~~k~~~l~~~~~~~------~--~d~~~v~~~~~~~~--~k~~~N~rlT~~~HfQDVR~~~F 221 (574)
T KOG1159|consen 153 IYPPYRPETDLIPT-VQITTKYSLLELGKASD------F--SDSDIVLEPQGQIP--AKLVENRRLTSADHFQDVRLFEF 221 (574)
T ss_pred hcCCCCCcccCCCc-ccccchhhhhhcccccc------C--Ccchhhhccccccc--cchhcceeecCcchhheeeEEEE
Confidence 87511111011111 11223344332222110 0 001111 111223 78999999999999999999999
Q ss_pred EecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCCCCCCCCCCCCCCCCC-cchHHHHHHhcccccC
Q 005185 341 DIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLS 419 (710)
Q Consensus 341 di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~~p-p~tl~~~l~~~~Dl~~ 419 (710)
+|.++.+.|+|||++.|+|.|+.+.|++++..+||++++...+.....+. .+..+-+| |+|+++++.+|+|+++
T Consensus 222 ~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~-----~~~~~~~~~p~sl~~~lk~~~D~~S 296 (574)
T KOG1159|consen 222 DIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDR-----SSPLPLLPNPLSLLNLLKYVLDFNS 296 (574)
T ss_pred ecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCcc-----cccccccCCchhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999877665433321 12222578 9999999999999999
Q ss_pred CccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCC
Q 005185 420 SPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISS 499 (710)
Q Consensus 420 ~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL~~fps~~~p~~~~l~~i~p~l~pR~YSIsS 499 (710)
.|+++||..|+.|++|+.||+||++++|++|.|+|.+|+.+++||++|||++|++.+.|+++++++ +|.++||+|||||
T Consensus 297 vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~-~P~IrPR~fSIas 375 (574)
T KOG1159|consen 297 VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDL-LPVIRPRAFSIAS 375 (574)
T ss_pred CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHh-ccccccceeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999986 4999999999999
Q ss_pred CC---ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCCCcCCCCCCCCeEEEecCCcchHHHH
Q 005185 500 SP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRG 576 (710)
Q Consensus 500 sp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~lp~~~~~piImIa~GTGIAPfrs 576 (710)
+| .++++|++|.++|.....+.|+||+||.++.+|+ .+++.+++|++.+|.+...|+||||+|||||||||
T Consensus 376 ~~~~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~------~i~~~v~~g~l~~p~~~~~PlImVGPGTGvAPfRa 449 (574)
T KOG1159|consen 376 SPGAHHLELLVAIVEYKTILKEPRRGLCSNWLASLKPGD------EIPIKVRPGTLYFPSDLNKPLIMVGPGTGVAPFRA 449 (574)
T ss_pred CCCCCceeEEEEEEEEeeeccccccchhHHHHhhcCCCC------eEEEEEecCccccCCCCCCCeEEEcCCCCcccHHH
Confidence 99 7899999999999999999999999999999986 58999999999999988999999999999999999
Q ss_pred HHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhcchhHHhhcc-c
Q 005185 577 FLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNML-S 655 (710)
Q Consensus 577 ~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~v~~~l-~ 655 (710)
++++|..++. .+..||||||+++.||+|.+||.+..+.+. +.|||||+++|.||||+|++.++.+|+++ .
T Consensus 450 ~i~er~~q~~-----~~~~lFfGCR~K~~Df~y~~eW~~~~~~~~----~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll~~ 520 (574)
T KOG1159|consen 450 LIQERIYQGD-----KENVLFFGCRNKDKDFLYEDEWTELNKRAF----HTAFSRDQEQKVYVQHKIRENGEEVWDLLDN 520 (574)
T ss_pred HHHHHHhhcc-----CCceEEEecccCCccccccchhhhhhcchh----hhhcccccccceeHHHHHHHhhHHHHHHHhc
Confidence 9999997543 456999999999999999999999877653 45999999999999999999999999998 4
Q ss_pred CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 656 EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 656 ~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
.||+|||||++..|.++|..+|.+|+.+.++.+.+.|. |++.|++++||+.|+|
T Consensus 521 ~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 521 LGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred cCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 89999999999999999999999999999999777776 9999999999999999
No 2
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.7e-109 Score=933.09 Aligned_cols=592 Identities=47% Similarity=0.787 Sum_probs=508.8
Q ss_pred ccccCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCch
Q 005185 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDN 178 (710)
Q Consensus 99 ~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdn 178 (710)
.....+.+++|+|||||||||.+|+.+++.+ +++....+.+.|.+.++.+ ....+++|+.+|||+|+||||
T Consensus 41 ~~~~~~~~~~v~~~s~tgtae~~a~~l~~~~-~~~~~~~~~~~d~~~~~l~--------~~~~l~~~~~at~g~gd~~dn 111 (645)
T KOG1158|consen 41 KVKAKRVKATVLYGSQTGTAEDFAKRLSEIF-ARFELKVLKVADYDLYALE--------DHEKLLVVVLATYGEGDPPDN 111 (645)
T ss_pred HhhccceeEEEEeccCCCCHHHHHHHHHHHh-hhccccceeecchhhcccc--------cccceeeeeeehhcCCCCCcc
Confidence 3456778999999999999999999999999 8876544556666666532 456899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHH
Q 005185 179 AARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (710)
Q Consensus 179 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (710)
++.|.+|+.+.... ....++|+|||+||++|+|||++|+.+|++|+++||+|++.+|+||++.+.|++|..|++.+|+
T Consensus 112 ~~~f~~~l~~~~~~--~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~~~e~~f~~w~~~~~~ 189 (645)
T KOG1158|consen 112 AEAFYQSLTELKVL--PSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDAGLEEDFRTWKKPLLP 189 (645)
T ss_pred HHHHHHHHhhccCc--hhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccccchhHHHHHHHHHhH
Confidence 99999999986433 3455899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCccccccceEEEEecCCCcccC--ccccCCCCCCccccCCCCeeEEEEeeecccCCCCCCcEE
Q 005185 259 ELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVG--EKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCT 336 (710)
Q Consensus 259 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~ 336 (710)
++++.+..+... .++.....+.++............ .......+...+++..+|+.+.++.+++|+++.++|+|+
T Consensus 190 ~~~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~ 266 (645)
T KOG1158|consen 190 ELCETFSLEEDE---ATKEDETIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALVVVNLALSTPSSDRSCI 266 (645)
T ss_pred hhhheeeecccc---ccCCcccccccccCcCccccccccccCccccccccCCcchhcccchhhhhHHhhccCCCCceEEE
Confidence 999887644221 111111111111111100000000 000011122356788999999999999999988999999
Q ss_pred EEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCCCCCCCCCCCCCCCCC-cchHHHHHHhcc
Q 005185 337 HLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYA 415 (710)
Q Consensus 337 hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~~p-p~tl~~~l~~~~ 415 (710)
|+++++.+.+++|+||||++|+|.|+.+.|++++++|+++++..+.++....+++.......+.||| |||++++|+||+
T Consensus 267 ~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~~~~l~~~l 346 (645)
T KOG1158|consen 267 HLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTTLRTALTHYL 346 (645)
T ss_pred EEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCcHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988887776554433112245788999 999999999999
Q ss_pred cccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCccccc
Q 005185 416 DLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYY 495 (710)
Q Consensus 416 Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL~~fps~~~p~~~~l~~i~p~l~pR~Y 495 (710)
||+++|+|++|+.||+||+|+.||++|+.|+|++|+.+|..|+....++++|||.+||++++|+.++++. +|+++||+|
T Consensus 347 di~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~-lp~L~pR~Y 425 (645)
T KOG1158|consen 347 DITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLEL-LPRLQPRYY 425 (645)
T ss_pred cccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHh-Ccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999975 599999999
Q ss_pred ccCCCC-----ceEEEEEEEEeeCCCC-cccCCccchhhhccCCCCCCCCCceEEEEEecCCCcCCCCCCCCeEEEecCC
Q 005185 496 SISSSP-----RIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGT 569 (710)
Q Consensus 496 SIsSsp-----~i~~tv~~v~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~lp~~~~~piImIa~GT 569 (710)
|||||| ++|+++.++.+.++.| +.+.|+||+||.++.+++... .++.++.+.|+||.|+.+||||||+||
T Consensus 426 SIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~----~~~~~~~s~frlp~dp~~PiIMIGpGT 501 (645)
T KOG1158|consen 426 SISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVP----NPVPVGKSMFRLPSDPSTPIIMIGPGT 501 (645)
T ss_pred ccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccC----cceeecccceecCCCCCCcEEEEcCCC
Confidence 999999 7999999998887775 677899999999999987531 147778899999999999999999999
Q ss_pred cchHHHHHHHHHHHhhhhCC--CCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCC-CCcccccchhhcc
Q 005185 570 GLAPFRGFLQERFALQEAGA--ELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG-PTKEYVQHKMMEK 646 (710)
Q Consensus 570 GIAPfrs~l~~~~~~~~~~~--~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~-~~k~yVq~~l~~~ 646 (710)
||||||||+|+|..+.+++. ..+ +|||||||+.+.||+|++||+++.+.+.++++.+||||++ +.|.||||+|+++
T Consensus 502 GiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k~YVQd~l~e~ 580 (645)
T KOG1158|consen 502 GIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKKIYVQDRLREY 580 (645)
T ss_pred cchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCceehhhHHHHH
Confidence 99999999999998876542 224 8999999999999999999999999999999999999998 7899999999999
Q ss_pred hhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 647 SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 647 ~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
+++||++| .++++|||||++++|+++|.++|.+|+++.++++.++|++++++|++++||++|||
T Consensus 581 ~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 581 ADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred HHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence 99999998 56999999999877999999999999999999999999999999999999999999
No 3
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=4e-105 Score=914.49 Aligned_cols=534 Identities=30% Similarity=0.509 Sum_probs=463.8
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHH
Q 005185 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (710)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (710)
.+++|+|+|||||||||.+|++|++.+.+.+ ..++++++++|+. .+|.+++.+||++||||+|+|||||..|
T Consensus 60 ~~~~v~IlygSqTGnae~lA~~la~~l~~~g--~~~~v~~~~d~~~------~~L~~~~~vl~v~ST~G~Ge~Pdna~~F 131 (600)
T PRK10953 60 EMPGITLISASQTGNARRVAEQLRDDLLAAK--LNVNLVNAGDYKF------KQIAQEKLLIVVTSTQGEGEPPEEAVAL 131 (600)
T ss_pred CCCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CCcEEechHhCCH------hHhccCCeEEEEECCCCCCCCChhHHHH
Confidence 4788999999999999999999999998876 4578999999985 4588899999999999999999999999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHh
Q 005185 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (710)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (710)
|+||.... ...|.+++||||||||++|++||.++|.+|++|+++||+|+++++.+|. +.+++|++|.+++|++|.+
T Consensus 132 ~~~L~~~~--~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~--~~e~~~~~W~~~~~~~l~~ 207 (600)
T PRK10953 132 HKFLFSKK--APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADV--EYQAAASEWRARVVDALKS 207 (600)
T ss_pred HHHHhhCc--CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeeccccccc--ccHHHHHHHHHHHHHHHHh
Confidence 99997643 3469999999999999999999999999999999999999999986654 4799999999999999987
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeEEEEeeecccCCCCCCcEEEEEEEe
Q 005185 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDI 342 (710)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di 342 (710)
...... ...... . . .... ......|+..+|+.++|+.|++|+.++++++|+||||||
T Consensus 208 ~~~~~~----~~~~~~---~--~----~~~~----------~~~~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl 264 (600)
T PRK10953 208 RAPAVA----APSQSV---A--T----GAVN----------EIHTSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDL 264 (600)
T ss_pred hcCCcc----cccccc---c--c----cccc----------ccccCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEec
Confidence 653110 000000 0 0 0000 001124667899999999999999999999999999999
Q ss_pred cCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCcc
Q 005185 343 AGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPK 422 (710)
Q Consensus 343 ~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~~pp~tl~~~l~~~~Dl~~~p~ 422 (710)
++++++|+|||||+|||+|+++.|+++|++||+++++.+.+.. .++|++++|++|+||+.+ +
T Consensus 265 ~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~-----------------~~~tl~~~l~~~~dl~~~-~ 326 (600)
T PRK10953 265 GDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG-----------------KTLPLAEALQWHFELTVN-T 326 (600)
T ss_pred CCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC-----------------CCCCHHHHHHHhcccCCC-c
Confidence 9999999999999999999999999999999999999877641 156999999999999875 6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCC-
Q 005185 423 KSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP- 501 (710)
Q Consensus 423 k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp- 501 (710)
+.+|+.+++++.+++ |++|.. +++.+.+|+. +++++|||++|| .+++++||+++ +|+++||+|||||+|
T Consensus 327 ~~~l~~~a~~~~~~~----l~~~~~--~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q~l~l-l~~l~pR~YSIaSsp~ 396 (600)
T PRK10953 327 ANIVENYATLTRSET----LLPLVG--DKAALQHYAA--TTPIVDMVRFAP-AQLDAEQLIGL-LRPLTPRLYSIASSQA 396 (600)
T ss_pred HHHHHHHHHhCCCHH----HHHHhc--CHHHHHHHhc--CCCHHHHHHhCC-CCCCHHHHHHh-CCCCCCeeeecccCCC
Confidence 789999999998754 344432 5667777764 699999999998 68999999976 488999999999998
Q ss_pred ----ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEEec-CCCcCCCCCCCCeEEEecCCcchHHH
Q 005185 502 ----RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFR 575 (710)
Q Consensus 502 ----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v~~-g~F~lp~~~~~piImIa~GTGIAPfr 575 (710)
++|+||+++.+. ..|+.+.|+||+||.+ +.+|+ .++|+++. +.|++|.++.+|+||||+||||||||
T Consensus 397 ~~~~~v~ltv~~v~~~-~~g~~~~G~~S~~L~~~l~~Gd------~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfr 469 (600)
T PRK10953 397 EVENEVHITVGVVRYD-IEGRARAGGASSFLADRLEEEG------EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFR 469 (600)
T ss_pred CCCCeEEEEEEEEEee-cCCCCcCceEhhhhhhcCCCCC------EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHH
Confidence 689999888765 4678889999999996 55544 68899875 58999988889999999999999999
Q ss_pred HHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhcchhHHhhccc
Q 005185 576 GFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLS 655 (710)
Q Consensus 576 s~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~v~~~l~ 655 (710)
||+|++...+. .++++||||||++..||+|++||++|.+.+.+++++++|||++.+|+||||+|.++++++|+++.
T Consensus 470 sflq~r~~~~~----~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~ 545 (600)
T PRK10953 470 AFMQQRAADGA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWIN 545 (600)
T ss_pred HHHHHHHHcCC----CCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 99999987543 27899999999977799999999999999999999999999998899999999999999999998
Q ss_pred CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 656 EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 656 ~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 546 ~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 546 DGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred CCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 8999999999778999999999999999999999999999999999999999999
No 4
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=8e-103 Score=899.99 Aligned_cols=534 Identities=35% Similarity=0.616 Sum_probs=465.1
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHH
Q 005185 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (710)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (710)
..++|+|+|||||||||.+|+.|++++.+++ ..+++.+|++|+. .++.+++.+||++||||+|+||+||..|
T Consensus 57 ~~~~i~IlygSqTGnae~~A~~l~~~l~~~g--~~~~v~~~~d~~~------~~l~~~~~li~v~ST~GeGe~Pdna~~F 128 (597)
T TIGR01931 57 QEKRVTILYGSQTGNARRLAKRLAEKLEAAG--FSVRLSSADDYKF------KQLKKERLLLLVISTQGEGEPPEEAISF 128 (597)
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHHhCC--CccEEechHHCCH------hhcccCceEEEEeCCCCCCcCCHHHHHH
Confidence 3678999999999999999999999999876 4578999999985 4588899999999999999999999999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHh
Q 005185 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (710)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (710)
++||.+.+ ...|++++||||||||++|++||.++|.+|++|+++||+|++|++.+|. +.+++|++|.+++|+.|..
T Consensus 129 ~~~L~~~~--~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~--~~e~~~~~W~~~~~~~l~~ 204 (597)
T TIGR01931 129 HKFLHSKK--APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADL--DYDANAAEWRAGVLTALNE 204 (597)
T ss_pred HHHHHhCC--CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCcc--ChHHHHHHHHHHHHHHHHh
Confidence 99998643 3469999999999999999999999999999999999999999997765 4789999999999999986
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeEEEEeeecccCCCCCCcEEEEEEEe
Q 005185 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDI 342 (710)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di 342 (710)
.+.... .+ +.+.+. .... ......|+..+|+.++|+.|++|+..+++++|+||||||
T Consensus 205 ~~~~~~-----~~------~~~~~~--~~~~----------~~~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l 261 (597)
T TIGR01931 205 QAKGSA-----ST------PSLSET--PARS----------QTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDL 261 (597)
T ss_pred hccCcc-----CC------Ccceec--cccc----------ccccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEec
Confidence 542110 01 111110 0000 011234667899999999999999999999999999999
Q ss_pred cCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCcc
Q 005185 343 AGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPK 422 (710)
Q Consensus 343 ~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~~pp~tl~~~l~~~~Dl~~~p~ 422 (710)
++++++|+|||||+|||+|+++.|+++|++||+++++.+++. + +++|++++|++|+||+. ++
T Consensus 262 ~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-----~------------~~~tl~~~l~~~~dl~~-~~ 323 (597)
T TIGR01931 262 EGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-----G------------KTIPLFEALITHFELTQ-NT 323 (597)
T ss_pred CCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-----C------------CCcCHHHHHHhceeCCC-CC
Confidence 999999999999999999999999999999999999987663 1 15799999999999998 57
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCC-
Q 005185 423 KSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP- 501 (710)
Q Consensus 423 k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp- 501 (710)
|.+|+.||++++|++.++ +.+ +++.|.+|+. +++++|||++|| +++++|||+++ +|+++||+|||||+|
T Consensus 324 ~~~l~~la~~~~~~~l~~----~~~--~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~l-l~~~~~R~YSIaSsp~ 393 (597)
T TIGR01931 324 KPLLKAYAELTGNKELKA----LIA--DNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISL-LRPLTPRLYSISSSQS 393 (597)
T ss_pred HHHHHHHHHhcCCHHHHH----Hhc--CHHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHh-CcccCCceeeeccCcc
Confidence 999999999999986544 332 5777888885 799999999999 89999999975 488999999999998
Q ss_pred ----ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEEec-CCCcCCCCCCCCeEEEecCCcchHHH
Q 005185 502 ----RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ-SNFKLPADAKVPIIMIGPGTGLAPFR 575 (710)
Q Consensus 502 ----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v~~-g~F~lp~~~~~piImIa~GTGIAPfr 575 (710)
+++++|+++.+. ..|+.+.|.||+||.+ +.+|+ .++|+++. +.|++|.++.+|+||||+||||||||
T Consensus 394 ~~~~~l~ltV~~v~~~-~~~~~~~G~~S~~L~~~l~~Gd------~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfr 466 (597)
T TIGR01931 394 EVGDEVHLTVGVVRYQ-AHGRARLGGASGFLAERLKEGD------TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFR 466 (597)
T ss_pred cCCCEEEEEEEEEEec-CCCCccccchhHHHHhhCCCCC------EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHH
Confidence 689999988664 5678889999999998 66654 68888864 57999988889999999999999999
Q ss_pred HHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhcchhHHhhccc
Q 005185 576 GFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLS 655 (710)
Q Consensus 576 s~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~v~~~l~ 655 (710)
||+|++...+. .++++||||||+...|++|++||++|.+.+.+++++++|||++..++||||+|.++..++++++.
T Consensus 467 sflq~r~~~~~----~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~ 542 (597)
T TIGR01931 467 AFMQERAEDGA----KGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQ 542 (597)
T ss_pred HHHHHHHHccC----CCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHh
Confidence 99999987543 27899999999955699999999999999999899999999877899999999999999999887
Q ss_pred CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 656 EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 656 ~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
++++|||||+++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 543 ~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 543 EGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 7899999994489999999999999999999999999999999999999999999
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-99 Score=849.28 Aligned_cols=536 Identities=37% Similarity=0.661 Sum_probs=478.0
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHH
Q 005185 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (710)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (710)
.+.+++|+||||||||+.+|+.+++++...+ ..+.+.++++|+.. ++.....++|++||+|+|+||+||..|
T Consensus 46 ~~~~~~il~~sqtG~a~~~A~~~a~~~~~~g--~~~~~~~~~~~~~~------~~~~~~~~~~i~st~geGe~p~na~~f 117 (587)
T COG0369 46 NNKPITVLYGSQTGNAEGLAEELAKELEAAG--LQVLVASLDDYKPK------DIAEERLLLFVVSTQGEGEPPDNAVAF 117 (587)
T ss_pred CCCceEEEEccCCccHHHHHHHHHHHHHhcC--CceeecchhhcChh------hHHhhhceEEEEccccCCCCCCchHHH
Confidence 5788999999999999999999999999887 56789999999963 344447899999999999999999999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHh
Q 005185 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (710)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (710)
+++|... +...|.+++|+||||||++|+.||.++|.++++|.++||+++.+++++|.. +++++...|...+++.+..
T Consensus 118 ~~~l~~~--~a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~ 194 (587)
T COG0369 118 HEFLKGK--KAPKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKS 194 (587)
T ss_pred HHHhccc--ccccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHh
Confidence 9999864 355799999999999999999999999999999999999999999999876 7899999999999999987
Q ss_pred hhCCCCCCCCCCCCccccccceEEEEecCCCcccCccccCCCCCCccccCCCCeeEEEEeeecccCCCCCCcEEEEEEEe
Q 005185 263 LLRDDDDPTTVSTPYTAAISEYRVVFYDNADASVGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDI 342 (710)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di 342 (710)
........ ...+++ .+. . ...+....++.+.+..|++++...++|+|+|++||+
T Consensus 195 ~~~~~~~~--~~~~~~--~~~---------------------~-~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l 248 (587)
T COG0369 195 KFPGQEAA--PAQVAT--SPQ---------------------S-ESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDL 248 (587)
T ss_pred hccccccc--cccccc--hhc---------------------c-cccccccCcceeEeeccccCCccccCceeEEEEeec
Confidence 66322110 000110 000 0 122334567789999999999999999999999999
Q ss_pred cCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCcc
Q 005185 343 AGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPK 422 (710)
Q Consensus 343 ~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~~pp~tl~~~l~~~~Dl~~~p~ 422 (710)
++++++|+|||+|+|||+|+++.|+++|..||+++++.++++ + .+.++.++|.+|+|++..|
T Consensus 249 ~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~-----~------------~~~~~~~~l~~~~e~~~~~- 310 (587)
T COG0369 249 PDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD-----G------------ETLPLVEALKSHFEFTSAP- 310 (587)
T ss_pred ccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----C------------CcchHHHHHHHheecccch-
Confidence 999999999999999999999999999999999998666332 1 1679999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCC-
Q 005185 423 KSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP- 501 (710)
Q Consensus 423 k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp- 501 (710)
|+++..|+.|+.+++.++.|..++ ...|..|.. +++++|+|++||++++|++++++. +|++.||+|||||+|
T Consensus 311 ~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~li~~-l~~lkPR~YSIsSs~~ 383 (587)
T COG0369 311 KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEELIDL-LPPLKPRLYSIASSPG 383 (587)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHHHHHh-CccCCCeeeEeccCCC
Confidence 999999999999999999999886 556767665 899999999999999999999975 599999999999999
Q ss_pred ----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecC-CCcCCCCCCCCeEEEecCCcchHHHH
Q 005185 502 ----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRG 576 (710)
Q Consensus 502 ----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g-~F~lp~~~~~piImIa~GTGIAPfrs 576 (710)
++|+||.+|.+... ++.+.|+||+||.++...|+ .++|+++.+ +|++|.++.+||||||+||||||||+
T Consensus 384 ~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g~-----~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFRa 457 (587)
T COG0369 384 VSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEGD-----TIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRA 457 (587)
T ss_pred CCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCCC-----eEEEEeccCCccccCCCCCCceEEEcCCCCchhHHH
Confidence 68999999988776 55889999999999988443 689999876 89999998999999999999999999
Q ss_pred HHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhcchhHHhhcccC
Q 005185 577 FLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSE 656 (710)
Q Consensus 577 ~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~v~~~l~~ 656 (710)
|+|+|...+.. |++|||||||+.+.||+|++||++|.+.|.++++.+||||++.+|.||||+|++++++||+++.+
T Consensus 458 fvq~r~~~~~~----gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~KiYVQd~lre~~del~~~l~~ 533 (587)
T COG0369 458 FVQERAANGAE----GKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLREQADELWEWLEE 533 (587)
T ss_pred HHHHHHhcccc----CceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCCCccHHHHHHHhHHHHHHHHHC
Confidence 99999987654 68999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 657 GAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 657 ~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
+++|||||+++.|+++|.++|.+|+.+.++++.|+|++++++|++++||++|||
T Consensus 534 ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 534 GAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 999999997799999999999999999999999999999999999999999999
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=1.6e-77 Score=664.74 Aligned_cols=390 Identities=53% Similarity=0.935 Sum_probs=351.7
Q ss_pred CCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCC-CCceEEEecCCCCC
Q 005185 312 AQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS-PDTYFSLHTDKEDG 390 (710)
Q Consensus 312 ~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~-~d~~~~i~~~~~~~ 390 (710)
..+|+.++|+.+++|+.+ ++|+++||+||+++++++|+|||||+|+|+|+++.|+++|++||++ +++.+.+.....
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~-- 78 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDE-- 78 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCc--
Confidence 367899999999999988 8999999999999889999999999999999999999999999999 899988874332
Q ss_pred CCCCCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHH
Q 005185 391 TPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVM 469 (710)
Q Consensus 391 ~~~~~~~~~~~~p-p~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL 469 (710)
..+.+.|+| |||++++|++|+||+++|+|.+|+.||.||+|++||++|.+|++ +|+++|.+|+.+.++|++|||
T Consensus 79 ----~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL 153 (416)
T cd06204 79 ----PASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVL 153 (416)
T ss_pred ----ccccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHH
Confidence 123456899 99999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred hhCCCCC---CChHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCC-----
Q 005185 470 SEFPSAK---PPLGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEK----- 536 (710)
Q Consensus 470 ~~fps~~---~p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~----- 536 (710)
++||+++ +|++.|++. +|+++||+|||||+| ++++||+++.++++.++.+.|+||+||+++.++..
T Consensus 154 ~~f~s~~~~~~pl~~ll~~-lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~ 232 (416)
T cd06204 154 QDFPSAKPTPPPFDFLIEL-LPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPP 232 (416)
T ss_pred HhCcccCCCCCCHHHHHHh-CccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccc
Confidence 9999999 999999976 599999999999999 58999999988888888899999999999885110
Q ss_pred ----------CCCCceEEEEEecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcc
Q 005185 537 ----------SNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD 606 (710)
Q Consensus 537 ----------~~~~~~i~v~v~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D 606 (710)
...++.++++++.|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+++.|
T Consensus 233 ~~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d 312 (416)
T cd06204 233 TPYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDED 312 (416)
T ss_pred cccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcc
Confidence 0012478999999999999887899999999999999999999987654333334789999999999559
Q ss_pred cchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCC
Q 005185 607 YIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 686 (710)
Q Consensus 607 ~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~ 686 (710)
++|++||++|++.+.+++++++|||++..++|||++|.++.+.+++++.++++||||||+..|+++|+++|.+|++++++
T Consensus 313 ~ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~ 392 (416)
T cd06204 313 FIYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGG 392 (416)
T ss_pred cchHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHHhCC
Confidence 99999999999988888999999998878999999999888888887777899999999434999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 687 LDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 687 ~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
++.++|++|+++|+++|||++|||
T Consensus 393 ~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 393 MTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred CCHHHHHHHHHHHHHcCCeeEecC
Confidence 999999999999999999999999
No 7
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=5.5e-76 Score=649.30 Aligned_cols=376 Identities=40% Similarity=0.715 Sum_probs=337.2
Q ss_pred EEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCC--CCceEEEecCCCCCCCCCCCC
Q 005185 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLGKST 397 (710)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~--~d~~~~i~~~~~~~~~~~~~~ 397 (710)
|..+++||++++.++|+||+||+++++++|+|||||+|+|+|+++.|++++++||++ +++.+.++.....+. .+..
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK--KNAK 79 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc--cccc
Confidence 677899999999999999999999889999999999999999999999999999999 889888874222111 1235
Q ss_pred CCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCC
Q 005185 398 LPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAK 476 (710)
Q Consensus 398 ~~~~~p-p~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL~~fps~~ 476 (710)
++.+|| |+|++++|++|+||+++|+|++|+.||+||+|++||++|.+|++.+|+++|.+|+.+.++|++|||++||+++
T Consensus 80 ~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~ 159 (398)
T cd06203 80 VPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCR 159 (398)
T ss_pred cCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCC
Confidence 778899 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEeeCCCCcccCCccchhhhccC-----CCCCCCCCceEEEE
Q 005185 477 PPLGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSL-----PMEKSNDCSWAPIF 546 (710)
Q Consensus 477 ~p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~-----~g~~~~~~~~i~v~ 546 (710)
+|++.+++. +|+++||+|||||+| .++++|+++.+++ .|+||+||+++. +|+ .+.+.
T Consensus 160 ~pl~~ll~~-lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G~------~v~i~ 226 (398)
T cd06203 160 PPLSLLIEH-LPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHGV------KVPFY 226 (398)
T ss_pred CCHHHHHHh-CccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCCC------EEEEE
Confidence 999999986 599999999999998 5788888775422 699999999988 554 67888
Q ss_pred Ee-cCCCcCCCC-CCCCeEEEecCCcchHHHHHHHHHHHhhh--hCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCC
Q 005185 547 VR-QSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQE--AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 622 (710)
Q Consensus 547 v~-~g~F~lp~~-~~~piImIa~GTGIAPfrs~l~~~~~~~~--~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~ 622 (710)
++ .|.|.+|.+ ..+|+||||+||||||||||+|++..... .+...++++||||||+++.|++|++||++|.+.+.+
T Consensus 227 ~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~ 306 (398)
T cd06203 227 LRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL 306 (398)
T ss_pred EecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC
Confidence 85 567999876 67899999999999999999999976431 122347999999999995599999999999999999
Q ss_pred cEEEEEEecCCC---CcccccchhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005185 623 SQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 698 (710)
Q Consensus 623 ~~l~~a~Sr~~~---~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~ 698 (710)
++++++|||++. .++||||++.++.+++++++ ..+++||||||++.|+++|+++|.+|+.+.++++.++|++|+++
T Consensus 307 ~~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~ 386 (398)
T cd06203 307 TRLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLAR 386 (398)
T ss_pred ceEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 899999999876 48999999999998999876 56899999999778999999999999999999999999999999
Q ss_pred HHHCCCeEEeeC
Q 005185 699 LQMTGRYLRDVW 710 (710)
Q Consensus 699 l~~~gRy~~DvW 710 (710)
|+++|||++|||
T Consensus 387 l~~~gRy~~dvw 398 (398)
T cd06203 387 LRKEDRYLEDVW 398 (398)
T ss_pred HHHcCCeeeecC
Confidence 999999999999
No 8
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=1.2e-75 Score=644.36 Aligned_cols=373 Identities=43% Similarity=0.791 Sum_probs=341.1
Q ss_pred EEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCCCCCCCCCCCCC
Q 005185 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 399 (710)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~ 399 (710)
|+.|++|+.++++++|+||+|++++++++|+|||||+|+|+|+++.|+++|++||+++++.++++... ..+.+
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~-------~~~~~ 74 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNE-------QQRGK 74 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccc-------ccccC
Confidence 56789999999999999999999888999999999999999999999999999999999999887533 12346
Q ss_pred CCCC-cchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 005185 400 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKPP 478 (710)
Q Consensus 400 ~~~p-p~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL~~fps~~~p 478 (710)
.|+| |+|++++|++|+||+++|++.+|+.||.||+|+++|++|.+|++.++.+.|.++ .+++++|+|++||++++|
T Consensus 75 ~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 75 PPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 6889 999999999999999999999999999999999999999999999999999988 789999999999999999
Q ss_pred hHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCCCc
Q 005185 479 LGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFK 553 (710)
Q Consensus 479 ~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~ 553 (710)
++.|++. +|+++||+|||||+| .++++|+++.+.++.++.+.|+||+||.++.+|+ .+.|.++.|.|+
T Consensus 152 ~~~ll~~-lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~~p~g~F~ 224 (382)
T cd06207 152 LEQLLEL-CPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQ------RVTVFIKKSSFK 224 (382)
T ss_pred HHHHHHh-CcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCC------EEEEEEECCccc
Confidence 9999985 599999999999998 5889999988777778888999999999987765 688999999999
Q ss_pred CCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCC
Q 005185 554 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 633 (710)
Q Consensus 554 lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~ 633 (710)
+|.+..+|+||||+||||||||||++++......+...++++||||||+++.|++|++||++|.+.+.+++++++|||++
T Consensus 225 lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~ 304 (382)
T cd06207 225 LPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQ 304 (382)
T ss_pred CCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCC
Confidence 99887899999999999999999999998654333345899999999999459999999999999999889999999998
Q ss_pred CCcccccchhhcchhHHhhcccCC-cEEEEecCchh-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 634 PTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 634 ~~k~yVq~~l~~~~~~v~~~l~~~-~~iyvCGpa~~-M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
..++|||+++.++.+.+++++.++ ++|||||| +. |+++|+++|.+++.+.+++++++|++|+++|+++|||++|||
T Consensus 305 ~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~-~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 305 PKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGS-TWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCceEhHHHHHHCHHHHHHHHhcCCCEEEEECC-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 889999999999888888877555 49999999 55 999999999999999999999999999999999999999999
No 9
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=2.3e-75 Score=645.48 Aligned_cols=381 Identities=41% Similarity=0.742 Sum_probs=335.2
Q ss_pred EEeeecccCCCCCCcEEEEEEEecC-CCCccCCCCeeEEccCCCHHHHHHHHHHcCCC--CCceEEEecCCCCCCCCC--
Q 005185 320 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCENLSETVEEALSLLGLS--PDTYFSLHTDKEDGTPLG-- 394 (710)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~--~d~~~~i~~~~~~~~~~~-- 394 (710)
|+.+++|+++.++|+|+||+||+++ ++++|+|||||+|+|+|+++.|+++|++||+. .++.+.++.........+
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 5678999999999999999999987 69999999999999999999999999999984 577788775433221110
Q ss_pred CCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC
Q 005185 395 KSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP 473 (710)
Q Consensus 395 ~~~~~~~~p-p~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL~~fp 473 (710)
....++++| |+|++++|++|+||+++|++.+|+.||.||+|+++|++|.+|++ ++++|.+|+...++|++|+|++||
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~ 159 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFP 159 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCC
Confidence 012234555 99999999999999999999999999999999999999999986 889999999999999999999999
Q ss_pred CCCCChHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEeeCCC--CcccCCccchhhhccCCCCCCCCCceEEEE
Q 005185 474 SAKPPLGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 546 (710)
Q Consensus 474 s~~~p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~~~~--g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~ 546 (710)
++++|++.|++. +|+++||+|||||+| .++++|+++.+.++. |+.+.|+||+||+++.+|+ .+.|+
T Consensus 160 s~~~~~~~ll~~-lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~ 232 (406)
T cd06202 160 SLQVPASLLLTQ-LPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGD------TVPCF 232 (406)
T ss_pred cCCCCHHHHHHh-CcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCC------EEEEE
Confidence 999999999975 599999999999998 678999888665543 4567899999999988865 57888
Q ss_pred Eec-CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhh----hhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCC
Q 005185 547 VRQ-SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ----EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 621 (710)
Q Consensus 547 v~~-g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~----~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~ 621 (710)
++. +.|++|.+..+|+||||+||||||||||+|++.... ..+...++++||||||+++.|++|++||++|.+.+.
T Consensus 233 ~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~ 312 (406)
T cd06202 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGV 312 (406)
T ss_pred EeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCC
Confidence 874 579999888899999999999999999999986542 122335899999999999559999999999999999
Q ss_pred CcEEEEEEecCCC-CcccccchhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005185 622 LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNL 699 (710)
Q Consensus 622 ~~~l~~a~Sr~~~-~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l 699 (710)
+++++++|||++. .++|||++|.++++.+++++ .++++|||||| +.|+++|+++|.+|+++.++++.++|++|+++|
T Consensus 313 ~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l 391 (406)
T cd06202 313 LTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILKL 391 (406)
T ss_pred CceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9899999999864 58999999999999999987 67899999999 689999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 005185 700 QMTGRYLRDVW 710 (710)
Q Consensus 700 ~~~gRy~~DvW 710 (710)
+++|||++|||
T Consensus 392 ~~~gRy~~dvw 402 (406)
T cd06202 392 RDENRYHEDIF 402 (406)
T ss_pred HHcCCeEEEec
Confidence 99999999999
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=9.9e-73 Score=621.56 Aligned_cols=370 Identities=36% Similarity=0.619 Sum_probs=329.0
Q ss_pred EEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCCCCCCCCCCCC
Q 005185 319 NVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTL 398 (710)
Q Consensus 319 ~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~ 398 (710)
+|+.|++|+.++++|+|+||+|++++ +++|+|||||+|+|+|+++.|+++|++||+++++.+.++.... ..
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~--------~~ 71 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS--------AT 71 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC--------CC
Confidence 36789999999999999999999975 8999999999999999999999999999999999998875221 23
Q ss_pred CCCCC-cchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCCCCC
Q 005185 399 PPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPSAKP 477 (710)
Q Consensus 399 ~~~~p-p~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL~~fps~~~ 477 (710)
+.|+| |+|++++|++|+||+++|+|.||+.||+||+|+++|++|..++ +++|.+++..+++|++|||++||++++
T Consensus 72 ~~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~ 147 (384)
T cd06206 72 GLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIAL 147 (384)
T ss_pred CCCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCC
Confidence 45677 9999999999999999999999999999999999999999885 467999999999999999999999999
Q ss_pred ChHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEeeCCCC-cccCCccchhhhccCCCCCCCCCceEEEEE--ec
Q 005185 478 PLGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDCSWAPIFV--RQ 549 (710)
Q Consensus 478 p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v--~~ 549 (710)
|+++|++.+ |+++||+|||||+| .++++|+++.+.++.+ +.+.|+||+||.++.+|+ .+.|.+ +.
T Consensus 148 ~~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~i~~p~ 220 (384)
T cd06206 148 PLATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGD------SIHVSVRPSH 220 (384)
T ss_pred CHHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCC------eEEEEEecCC
Confidence 999999865 99999999999998 4789998887665554 567899999999887765 466654 46
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|.|.+|.+..+|+||||+|||||||+||++++......+...++++||||||+.+.|++|++||++|++.+.+ +++++|
T Consensus 221 g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~-~l~~a~ 299 (384)
T cd06206 221 SAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVV-SVRRAY 299 (384)
T ss_pred CccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCe-EEEEEe
Confidence 7899988778999999999999999999999976543333447899999999995599999999999986654 899999
Q ss_pred ecCCCC-cccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCC
Q 005185 630 SREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQG----SLDSSKAESMVKNLQMTGR 704 (710)
Q Consensus 630 Sr~~~~-k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~gR 704 (710)
||++.. ++|||++|.+..+.+++++.++++|||||| ++|+++|.++|.+++.+.+ +++.++|++|+++|+++||
T Consensus 300 Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gr 378 (384)
T cd06206 300 SRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGR 378 (384)
T ss_pred cccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCC
Confidence 998764 899999999888888887777899999999 6799999999999999998 9999999999999999999
Q ss_pred eEEeeC
Q 005185 705 YLRDVW 710 (710)
Q Consensus 705 y~~DvW 710 (710)
|++|||
T Consensus 379 y~~dvw 384 (384)
T cd06206 379 YATDVF 384 (384)
T ss_pred eeeecC
Confidence 999999
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=3.7e-70 Score=595.71 Aligned_cols=350 Identities=41% Similarity=0.671 Sum_probs=311.3
Q ss_pred EEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCCCCCCCCCCCCC
Q 005185 320 VAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLP 399 (710)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~ 399 (710)
|+.|++|++++++++++||+||+++++++|+|||||+|+|+|+++.|++++++||+++++.+.+
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~---------------- 65 (360)
T cd06199 2 VLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST---------------- 65 (360)
T ss_pred cceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC----------------
Confidence 6789999999999999999999998899999999999999999999999999999999887531
Q ss_pred CCCC-cchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC--CCC
Q 005185 400 PTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP--SAK 476 (710)
Q Consensus 400 ~~~p-p~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL~~fp--s~~ 476 (710)
++| |+|++++|++|+||+++ .++.|+.||+|+.++++|.. +|+++|.+ .++++|+|++|| +++
T Consensus 66 -~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 66 -VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred -CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 235 89999999999999987 45568899999999888775 57888764 589999999999 999
Q ss_pred CChHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEec-C
Q 005185 477 PPLGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ-S 550 (710)
Q Consensus 477 ~p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~-g 550 (710)
+|+|||++.+ |+++||+|||||+| +++++|+++.+.+ .++.+.|+||+||+++...|+ .+.|+++. +
T Consensus 132 ~~~gq~l~l~-~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~-~~~~~~G~~S~~L~~~~~~Gd-----~v~v~~~~~~ 204 (360)
T cd06199 132 LTAEELLDLL-RPLQPRLYSIASSPKAVPDEVHLTVAVVRYES-HGRERKGVASTFLADRLKEGD-----TVPVFVQPNP 204 (360)
T ss_pred CCHHHHHHhC-cCCCCcceeeccCcccCCCeEEEEEEEeeecC-CCCccceehhHHHHhcCCCCC-----EEEEEEecCC
Confidence 9999999764 88999999999998 5789998886554 356678999999998763333 68888865 5
Q ss_pred CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005185 551 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 630 (710)
Q Consensus 551 ~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 630 (710)
.|++|.++.+|+||||+||||||||||+|++..... .++++||||||+...|++|++||++|++.+.+++++++||
T Consensus 205 ~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~S 280 (360)
T cd06199 205 HFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGA----KGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFS 280 (360)
T ss_pred CcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccC----CCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEc
Confidence 799998878999999999999999999999876432 3789999999998559999999999999898889999999
Q ss_pred cCCCCcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 631 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 631 r~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
|++..++|||+++.++...+++++.++++||||||++.|+++|+++|.+|+++.++++.++|++|+++|+++|||++|||
T Consensus 281 r~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 360 (360)
T cd06199 281 RDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDVY 360 (360)
T ss_pred cCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 99888999999999998889888777899999999448999999999999999999999999999999999999999999
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=1.8e-69 Score=608.39 Aligned_cols=365 Identities=38% Similarity=0.652 Sum_probs=320.6
Q ss_pred CCccccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEec
Q 005185 306 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHT 385 (710)
Q Consensus 306 ~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~ 385 (710)
+...|+..+|+.++|+.|++|++++++++|+||+||+++++++|+|||||+|+|+|+++.|+++|++||+++++.+
T Consensus 159 ~~~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~---- 234 (530)
T PRK06214 159 GPLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI---- 234 (530)
T ss_pred cCCccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc----
Confidence 3445677899999999999999999999999999999989999999999999999999999999999999987532
Q ss_pred CCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCH
Q 005185 386 DKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSL 465 (710)
Q Consensus 386 ~~~~~~~~~~~~~~~~~pp~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l 465 (710)
.++|++++|++|+||+++| +.+|+.|+.++++++ +++|+.|++....+.. ....++
T Consensus 235 -----------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~v 290 (530)
T PRK06214 235 -----------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDV 290 (530)
T ss_pred -----------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcH
Confidence 1579999999999999876 788999999998766 7788888754333221 134689
Q ss_pred HHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCC
Q 005185 466 LEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSND 539 (710)
Q Consensus 466 ~dvL~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~ 539 (710)
+|+|++||++++|+++|++. +|+++||+|||||+| +++++|+++.+. ..++.+.|+||+||++ +.+|+
T Consensus 291 ldvL~~fp~~~~~~~~lle~-lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~-~~~~~~~G~~S~~L~~~l~~Gd---- 364 (530)
T PRK06214 291 LAALEKFPGIRPDPEAFVEA-LDPLQPRLYSISSSPKATPGRVSLTVDAVRYE-IGSRLRLGVASTFLGERLAPGT---- 364 (530)
T ss_pred HHHHHhCCCCCCCHHHHHhh-cCCCCcEEEEeccCCcCCCCEEEEEEEEEeec-cCCccccchhhHHHHhcCCCCC----
Confidence 99999999999999999975 599999999999998 688999888665 3567789999999985 55554
Q ss_pred CceEEEEEecC-CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHH
Q 005185 540 CSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 618 (710)
Q Consensus 540 ~~~i~v~v~~g-~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 618 (710)
.+.|+++.+ .|++|.+..+|+||||+||||||||||+|++..... .++++||||||+...|++|++||++|.+
T Consensus 365 --~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~----~g~~~LffG~R~~~~D~ly~dEL~~l~~ 438 (530)
T PRK06214 365 --RVRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKA----PGRNWLFFGHQRSATDFFYEDELNGLKA 438 (530)
T ss_pred --EEEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcC----CCCeEEEEEecCChhhhHHHHHHHHHHH
Confidence 578887543 499998778899999999999999999999876532 2789999999887679999999999999
Q ss_pred cCCCcEEEEEEecCCCCcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005185 619 SGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKN 698 (710)
Q Consensus 619 ~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~ 698 (710)
.+.+++++++|||++..++||||+|.++..++++++.++++||||||++.|+++|+++|.+|+.++++++.++|++|+++
T Consensus 439 ~g~l~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~ 518 (530)
T PRK06214 439 AGVLTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAE 518 (530)
T ss_pred hCCceEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99988899999999888999999999998899998878899999999667889999999999999999999999999999
Q ss_pred HHHCCCeEEeeC
Q 005185 699 LQMTGRYLRDVW 710 (710)
Q Consensus 699 l~~~gRy~~DvW 710 (710)
|+++|||++|||
T Consensus 519 l~~~gRY~~Dvw 530 (530)
T PRK06214 519 LKKAGRYQADVY 530 (530)
T ss_pred HHHCCCEEEecC
Confidence 999999999999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=4.1e-46 Score=379.71 Aligned_cols=212 Identities=45% Similarity=0.817 Sum_probs=180.8
Q ss_pred cccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCC
Q 005185 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (710)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (710)
+|+.++|+.|+|+.+++|++++++|+|+||+||+++++++|+|||||+|||+|+++.|++++++||+++|+.+.++....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999997553
Q ss_pred CCCCCCCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHH
Q 005185 389 DGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLE 467 (710)
Q Consensus 389 ~~~~~~~~~~~~~~p-p~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~d 467 (710)
. .....||| |||++++|++|+||+++|+|.||+.||+||+|++||++|.+|++.+|+++|.+|+...+++++|
T Consensus 82 ~------~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~d 155 (219)
T PF00667_consen 82 N------NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLD 155 (219)
T ss_dssp T------SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHH
T ss_pred c------cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHH
Confidence 2 24567889 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCChHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEeeCCCCcccCCccchh
Q 005185 468 VMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEKTPTGRVHKGLCSTW 527 (710)
Q Consensus 468 vL~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~~~~g~~~~G~~S~~ 527 (710)
+|++||++++|+++|++. +|+++||+||||||| .+++||+++.+.+..|+.+.|+||+|
T Consensus 156 il~~fps~~~pl~~ll~~-lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 156 ILEDFPSCKPPLEELLEL-LPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHHSTTBTC-HHHHHHH-S-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HHhhCcccCCCHHHhhhh-CCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999976 599999999999998 79999999999889999999999998
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=7e-38 Score=339.31 Aligned_cols=268 Identities=25% Similarity=0.471 Sum_probs=221.4
Q ss_pred cccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCC
Q 005185 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (710)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (710)
.|...+|+.++|+.|.+++..+....++||+|+.++ .+.|+||.+++|.|+..
T Consensus 84 ~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~-------------------------- 136 (367)
T PLN03115 84 KFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGI-------------------------- 136 (367)
T ss_pred eeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCc--------------------------
Confidence 477889999999999999988878899999998764 68999999998855310
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005185 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (710)
Q Consensus 389 ~~~~~~~~~~~~~~pp~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 468 (710)
|.. |
T Consensus 137 ---------------------------~~~-------------------------------g------------------ 140 (367)
T PLN03115 137 ---------------------------DKN-------------------------------G------------------ 140 (367)
T ss_pred ---------------------------CCC-------------------------------C------------------
Confidence 000 0
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCC--------ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCC
Q 005185 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP--------RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 540 (710)
Q Consensus 469 L~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp--------~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~ 540 (710)
.+..+|+|||||+| .++++|+.+.+.+..|....|+||+||+++.+|+
T Consensus 141 -------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd----- 196 (367)
T PLN03115 141 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA----- 196 (367)
T ss_pred -------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcC-----
Confidence 11347999999987 4788887766655667778999999999988876
Q ss_pred ceEEEEEecCCCc-CCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhC-CCCCcEEEEEeecCCCcccchHHHHHHHHH
Q 005185 541 SWAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQ 618 (710)
Q Consensus 541 ~~i~v~v~~g~F~-lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 618 (710)
.+.|.+|.|.|. +|.++.+|+||||+|||||||+||++++....... ...++++||||||+.+ |++|.+||++|++
T Consensus 197 -~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~ 274 (367)
T PLN03115 197 -EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 274 (367)
T ss_pred -EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHH
Confidence 578888988765 46566789999999999999999999876543211 1136899999999997 9999999999988
Q ss_pred cCC-CcEEEEEEecCCC----CcccccchhhcchhHHhhccc-CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005185 619 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 692 (710)
Q Consensus 619 ~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l~-~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a 692 (710)
... .+++++++||++. .++|||++|.++.+++++++. .+++||+||| ++|+++|.++|.++....| + ++
T Consensus 275 ~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~---~~ 349 (367)
T PLN03115 275 KAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I---DW 349 (367)
T ss_pred hCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c---cH
Confidence 764 7899999999864 578999999999888988774 5789999999 8999999999999998874 3 57
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 005185 693 ESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 693 ~~~~~~l~~~gRy~~DvW 710 (710)
++++++|+++|||+.|||
T Consensus 350 ~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 350 FEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHHCCCeEEecC
Confidence 899999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=3e-35 Score=308.57 Aligned_cols=228 Identities=48% Similarity=0.878 Sum_probs=192.2
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCC-----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEec
Q 005185 476 KPPLGVFFAAIVPR-LQPRYYSISSSP-----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 476 ~~p~~~~l~~i~p~-l~pR~YSIsSsp-----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~ 549 (710)
...+|||+.+.+|. ..+|+|||+|+| .++++|+.+......+..+.|.+|+||+++.+|+ .+.|.++.
T Consensus 31 ~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~Gd------~v~v~~p~ 104 (267)
T cd06182 31 KYQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGA------KVTVFIRP 104 (267)
T ss_pred ccCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCCC------EEEEEEec
Confidence 45689999765443 468999999987 4777777665544555667799999999987765 57888998
Q ss_pred C-CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEE
Q 005185 550 S-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 628 (710)
Q Consensus 550 g-~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 628 (710)
| .|.++.+..+|+||||+|||||||++|++++......+...++++||||+|+.+.|++|.+||.+|++.+..++++++
T Consensus 105 G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~ 184 (267)
T cd06182 105 APSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALTRLDVA 184 (267)
T ss_pred CCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcceEEEE
Confidence 8 899987767899999999999999999999886421112236899999999993399999999999998888899999
Q ss_pred EecCCCC-cccccchhhcchhHHhhcccCCcEEEEecCchh-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeE
Q 005185 629 FSREGPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKS-MARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYL 706 (710)
Q Consensus 629 ~Sr~~~~-k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~-M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~ 706 (710)
+||+... ++||++.+.+..+.+++.+.+++.||+||| ++ |+++|.++|.+++.++++++.++|++++++|++.|||+
T Consensus 185 ~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (267)
T cd06182 185 FSREQAEPKVYVQDKLKEHAEELRRLLNEGAHIYVCGD-AKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYV 263 (267)
T ss_pred EccCCCCCceehHHHHHHhHHHHHHHHhcCCEEEEECC-cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeE
Confidence 9997653 789999988777777666656779999999 78 99999999999999999999999999999999999999
Q ss_pred EeeC
Q 005185 707 RDVW 710 (710)
Q Consensus 707 ~DvW 710 (710)
+|+|
T Consensus 264 ~~~~ 267 (267)
T cd06182 264 EDVW 267 (267)
T ss_pred EecC
Confidence 9999
No 16
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=8.3e-33 Score=293.45 Aligned_cols=186 Identities=34% Similarity=0.691 Sum_probs=154.9
Q ss_pred ccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEE-ecCCCcCCCCCCCCeEEEec
Q 005185 492 PRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV-RQSNFKLPADAKVPIIMIGP 567 (710)
Q Consensus 492 pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v-~~g~F~lp~~~~~piImIa~ 567 (710)
+|+|||+|+| .++++|+. ...|.||+||+++.+|+ .+.+.+ +.+.|.++ +..+|+||||+
T Consensus 100 ~R~YSias~p~~g~l~l~Vk~---------~~~G~~S~~L~~l~~Gd------~v~v~~~~~g~F~~~-~~~~~lvlIAg 163 (289)
T cd06201 100 PRFYSLASSSSDGFLEICVRK---------HPGGLCSGYLHGLKPGD------TIKAFIRPNPSFRPA-KGAAPVILIGA 163 (289)
T ss_pred CceEecCCCCCCCeEEEEEEe---------CCCccchhhHhhCCCcC------EEEEEeccCCCccCC-CCCCCEEEEec
Confidence 6999999998 45555432 24699999999987766 566765 46789876 44689999999
Q ss_pred CCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhcch
Q 005185 568 GTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKS 647 (710)
Q Consensus 568 GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~ 647 (710)
|||||||+||+++... .++++||||+|+.+.|++|++||++|.+++.+++++.++||++ .++|||+.+....
T Consensus 164 GtGIaP~~s~l~~~~~-------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~~~ 235 (289)
T cd06201 164 GTGIAPLAGFIRANAA-------RRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRADA 235 (289)
T ss_pred CcCHHHHHHHHHhhhc-------cCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHHhH
Confidence 9999999999997521 1689999999998548999999999999888888899999976 4899999988776
Q ss_pred hHHhhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 648 SDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 648 ~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
..+..++.+++.||+||| ++|+++|.+.|.+|+.+.+ + -+..|+++|||.+|||
T Consensus 236 ~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 236 ERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred HHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 666666667889999999 8999999999999998754 2 3889999999999998
No 17
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=1.4e-33 Score=292.58 Aligned_cols=209 Identities=33% Similarity=0.547 Sum_probs=169.5
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEe-cC
Q 005185 476 KPPLGVFFAAIVPR-LQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR-QS 550 (710)
Q Consensus 476 ~~p~~~~l~~i~p~-l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~-~g 550 (710)
..-+|||+.+.++. ..+|+|||||+| .++++|+.+.. +.| ..|.||+||++....|+ .+.|.+| .+
T Consensus 31 ~f~pGQ~v~l~~~~~~~~R~YSIas~p~~~~l~l~Vk~~~~--~~~--~~G~~S~~L~~~~~~Gd-----~v~i~gp~gg 101 (245)
T cd06200 31 QWQAGDIAEIGPRHPLPHREYSIASLPADGALELLVRQVRH--ADG--GLGLGSGWLTRHAPIGA-----SVALRLRENP 101 (245)
T ss_pred CccCCcEEEecCCCCCCCcceEeccCCCCCEEEEEEEEecc--CCC--CCeeechhhhhCCCCCC-----EEEEEecCCC
Confidence 34579998765442 578999999998 45665544321 112 35999999998743333 6788886 45
Q ss_pred CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005185 551 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 630 (710)
Q Consensus 551 ~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 630 (710)
.|.+|. ..+|+||||+|||||||+||++++.... .++++||||+|+.+.|++|.+||++|++.+.++++++++|
T Consensus 102 ~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~-----~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~~s 175 (245)
T cd06200 102 GFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG-----RHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDLAFS 175 (245)
T ss_pred cccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc-----CCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEEEEc
Confidence 798875 5689999999999999999999987643 1578999999998448999999999999999889999999
Q ss_pred cCCCCcccccchhhcchhHHhhcccCCcEEEEecCch-hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEee
Q 005185 631 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAK-SMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDV 709 (710)
Q Consensus 631 r~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~-~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~Dv 709 (710)
|++..++||++.+.+....+++++..+++||+||| + +|+++|.+.|.+++.+ +.+++|+++|||++|+
T Consensus 176 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~----------~~~~~~~~~~r~~~d~ 244 (245)
T cd06200 176 RDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGE----------EAVEALLAAGRYRRDV 244 (245)
T ss_pred cCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHH----------HHHHHHHHCCCeEEec
Confidence 98777899999998877777665556789999999 7 9999999999999975 2489999999999999
Q ss_pred C
Q 005185 710 W 710 (710)
Q Consensus 710 W 710 (710)
|
T Consensus 245 ~ 245 (245)
T cd06200 245 Y 245 (245)
T ss_pred C
Confidence 9
No 18
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=2.6e-33 Score=299.82 Aligned_cols=208 Identities=31% Similarity=0.508 Sum_probs=167.3
Q ss_pred cccccccCCCC--------ceEEEEEEEEeeCCC-C--c-ccCCccchhhhccCCCCCCCCCceEEEEEecCCCcC-CC-
Q 005185 491 QPRYYSISSSP--------RIHVTCALVYEKTPT-G--R-VHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKL-PA- 556 (710)
Q Consensus 491 ~pR~YSIsSsp--------~i~~tv~~v~~~~~~-g--~-~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~l-p~- 556 (710)
..|+|||||+| +++++|+.+.+..+. + . ...|.+|+||+++.+|+ .+.|.+|.|.|.+ |.
T Consensus 80 ~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~~~~ 153 (307)
T PLN03116 80 NVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGD------KVQITGPSGKVMLLPEE 153 (307)
T ss_pred CceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCC------EEEEEEecCCceeCCCC
Confidence 47999999998 367777766443321 1 1 25799999999977665 6888899999876 43
Q ss_pred CCCCCeEEEecCCcchHHHHHHHHHHHhhhh-CCCCCcEEEEEeecCCCcccchHHHHHHHHHcCC-CcEEEEEEecCCC
Q 005185 557 DAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFSREGP 634 (710)
Q Consensus 557 ~~~~piImIa~GTGIAPfrs~l~~~~~~~~~-~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~-~~~l~~a~Sr~~~ 634 (710)
+..+|+||||+|||||||+||+++....... ....++++||||+|+.+ |++|.+||++|++.+. .++++.++||++.
T Consensus 154 ~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL~~l~~~~~~~~~~~~~~sr~~~ 232 (307)
T PLN03116 154 DPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEFERYLKDYPDNFRYDYALSREQK 232 (307)
T ss_pred CCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHHHHHHHhCCCcEEEEEEEccCCc
Confidence 4567999999999999999999988764321 11136899999999997 9999999999998875 6789999999754
Q ss_pred ----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 635 ----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 635 ----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
.++||++.|.+..+.++..+..++.+|+||| ++|++++.+.|.+++.+.| + +++++++.|+++|||++|||
T Consensus 233 ~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~g-~---~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 233 NKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEERG-E---SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred ccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---cHHHHHHHHHHcCceEEecC
Confidence 3679999888766666555556789999999 8999999999999987764 4 36789999999999999999
No 19
>PRK09004 FMN-binding protein MioC; Provisional
Probab=100.00 E-value=2.5e-33 Score=267.41 Aligned_cols=144 Identities=22% Similarity=0.290 Sum_probs=127.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
|++|.|+|||||||||.+|++|++.+.+.+ ..++++|+.+ .+++.+++.+||++||||+|+||+|++.|+
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g--~~~~~~~~~~--------~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~ 70 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAG--FSTETLHGPL--------LDDLSASGLWLIVTSTHGAGDLPDNLQPFF 70 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcC--CceEEeccCC--------HHHhccCCeEEEEECCCCCCCCChhHHHHH
Confidence 568999999999999999999999998776 3466776643 245788999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHHHHHHH
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (710)
+||.+. ...|++++||||||||+.|++||.+++.++++|+++||++++|++++|++. ..|++|++|.+.++..|
T Consensus 71 ~~L~~~---~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 71 EELQEQ---KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred HHHHhc---CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 999874 235999999999999999999999999999999999999999999999865 36889999999988753
No 20
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=8e-32 Score=298.32 Aligned_cols=265 Identities=25% Similarity=0.439 Sum_probs=210.5
Q ss_pred cccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCC
Q 005185 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (710)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (710)
.|....|+.++|+.+++++.......++||.|+.++....|+||.++.|.++..
T Consensus 136 ~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~-------------------------- 189 (411)
T TIGR03224 136 LYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGT-------------------------- 189 (411)
T ss_pred cccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCc--------------------------
Confidence 467788999999999999877667789999999876568899998887743210
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005185 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (710)
Q Consensus 389 ~~~~~~~~~~~~~~pp~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 468 (710)
+. +|
T Consensus 190 ---------------------------~~-------------------------------~g------------------ 193 (411)
T TIGR03224 190 ---------------------------DA-------------------------------SG------------------ 193 (411)
T ss_pred ---------------------------Cc-------------------------------CC------------------
Confidence 00 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCC--------ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCC
Q 005185 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP--------RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 540 (710)
Q Consensus 469 L~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp--------~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~ 540 (710)
.+..+|+|||+|+| .++++|+.+. ....|....|.+|+||+++++|+
T Consensus 194 -------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~-~~~~g~~~~G~~S~~L~~lk~Gd----- 248 (411)
T TIGR03224 194 -------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVT-TDHQGNAVRGVASNYLCDLKKGD----- 248 (411)
T ss_pred -------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEE-ecCCCCcCcccchhHHhcCCCcC-----
Confidence 11246999999986 3677776664 23456677899999999988876
Q ss_pred ceEEEEEecCC-CcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHc
Q 005185 541 SWAPIFVRQSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS 619 (710)
Q Consensus 541 ~~i~v~v~~g~-F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~ 619 (710)
.+.|.+|.|+ |.+|..+.+|+||||+|||||||+||++++......+ ..++++||||+|+.+ |++|.+||+++.+.
T Consensus 249 -~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~ 325 (411)
T TIGR03224 249 -KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPKD 325 (411)
T ss_pred -EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHhc
Confidence 6788888886 6676555689999999999999999999987643211 237899999999997 99999999999865
Q ss_pred CCCcEEEEEEecCCC-CcccccchhhcchhHHhhccc-CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005185 620 GALSQLIVAFSREGP-TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVK 697 (710)
Q Consensus 620 ~~~~~l~~a~Sr~~~-~k~yVq~~l~~~~~~v~~~l~-~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~ 697 (710)
.. ++++++||++. .++|||+.+.+....+++++. .++.||+||| ++|+++|.+.|.++..+.+ +. .+++++
T Consensus 326 ~~--~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~~-~~---~~~~~~ 398 (411)
T TIGR03224 326 FI--DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATNG-LS---WETLEP 398 (411)
T ss_pred Cc--eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-cC---HHHHHH
Confidence 43 56779998643 589999999988777777663 4689999999 8999999999999997653 33 567999
Q ss_pred HHHHCCCeEEeeC
Q 005185 698 NLQMTGRYLRDVW 710 (710)
Q Consensus 698 ~l~~~gRy~~DvW 710 (710)
+|+++|||+.|+|
T Consensus 399 ~l~~~~r~~~e~~ 411 (411)
T TIGR03224 399 RLRAEGRLHLETY 411 (411)
T ss_pred HHHHCCCeEEecC
Confidence 9999999999999
No 21
>PRK05723 flavodoxin; Provisional
Probab=100.00 E-value=5e-33 Score=266.23 Aligned_cols=147 Identities=22% Similarity=0.224 Sum_probs=122.8
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (710)
++|.|+|||||||||.+|++|++.+.+.+. .+.++ .....++ ..+. ..+.+||++||||+|+||+|+..|++
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~g~--~~~~~--~~~~~~~---~~~~-~~~~li~~~sT~G~Ge~Pd~~~~f~~ 72 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAAGF--EAWHN--PRASLQD---LQAF-APEALLAVTSTTGMGELPDNLMPLYS 72 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHCCC--ceeec--CcCCHhH---HHhC-CCCeEEEEECCCCCCCCchhHHHHHH
Confidence 579999999999999999999999987652 23332 2222211 1111 23789999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCcccccccccCCC--CCchhhHHHHHHHHHHHHH
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDD--QCIEDDFSAWRELVWPELD 261 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~--~~~e~~f~~W~~~l~~~L~ 261 (710)
||.+.. ...|++++||||||||++| ++||.++++++++|+++||+|+++++++|++ .++|++|.+|++.+|++|.
T Consensus 73 ~L~~~~--~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 73 AIRDQL--PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred HHHhcC--ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHHhc
Confidence 998642 2269999999999999999 8999999999999999999999999999987 4689999999999998874
No 22
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=1.7e-32 Score=290.92 Aligned_cols=220 Identities=31% Similarity=0.504 Sum_probs=174.7
Q ss_pred ChHHHHHHhcCC--------CcccccccCCCC--------ceEEEEEEEEeeCCCC-cccCCccchhhhccCCCCCCCCC
Q 005185 478 PLGVFFAAIVPR--------LQPRYYSISSSP--------RIHVTCALVYEKTPTG-RVHKGLCSTWMKNSLPMEKSNDC 540 (710)
Q Consensus 478 p~~~~l~~i~p~--------l~pR~YSIsSsp--------~i~~tv~~v~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~ 540 (710)
-+|||+.+..|. ..+|+|||||+| .++++|+.+...++.. ..+.|.+|+||+++.+|+
T Consensus 42 ~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd----- 116 (286)
T cd06208 42 LEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGD----- 116 (286)
T ss_pred cCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCC-----
Confidence 468888654332 246999999986 4777777664433322 445699999999987765
Q ss_pred ceEEEEEecCCCcCC-CCCCCCeEEEecCCcchHHHHHHHHHHHhhhh-CCCCCcEEEEEeecCCCcccchHHHHHHHHH
Q 005185 541 SWAPIFVRQSNFKLP-ADAKVPIIMIGPGTGLAPFRGFLQERFALQEA-GAELGPSLLFFGCRNRKMDYIYEDELNNFVQ 618 (710)
Q Consensus 541 ~~i~v~v~~g~F~lp-~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~-~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 618 (710)
.+.|..+.|+|.+. .+..+|+||||+|||||||+||++++...... ....++++||||+|+.+ |++|.+||+++++
T Consensus 117 -~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~ 194 (286)
T cd06208 117 -DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYPK 194 (286)
T ss_pred -EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHHH
Confidence 67888898887654 34567999999999999999999998765211 11236899999999998 9999999999998
Q ss_pred cCC-CcEEEEEEecCCC----CcccccchhhcchhHHhhccc-CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005185 619 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 692 (710)
Q Consensus 619 ~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l~-~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a 692 (710)
+.. .+++++++||++. .++||++.+.+....+++.+. .+..||+||| ++|+++|++.|.+++. +..+|
T Consensus 195 ~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~-----~~~~~ 268 (286)
T cd06208 195 QYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE-----GGLAW 268 (286)
T ss_pred hCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-----ccHHH
Confidence 754 5789999998754 478999999887767766554 4469999999 8999999999999987 23579
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 005185 693 ESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 693 ~~~~~~l~~~gRy~~DvW 710 (710)
++++++|+++|||..|+|
T Consensus 269 ~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 269 EEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHHcCCeEEecC
Confidence 999999999999999999
No 23
>PRK08105 flavodoxin; Provisional
Probab=100.00 E-value=8.9e-33 Score=264.44 Aligned_cols=145 Identities=26% Similarity=0.385 Sum_probs=127.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
|++|.|+|||||||||.+|++|++.+.+.+ ..+.++++++++. ..+.+++.+||++||||+|+||+|+..|+
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g--~~~~~~~~~~~~~------~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~ 72 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQG--HEVTLFEDPELSD------WQPYQDELVLVVTSTTGQGDLPDSIVPLF 72 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhCC--CceEEechhhCCc------hhcccCCeEEEEECCCCCCCCChhHHHHH
Confidence 568999999999999999999999998765 4577888876542 12345789999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHHHHHHH
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (710)
++|.+. ...|++++|||||||||+|++||.++++++++|+++||++++|++++|++. +.|+.|++|.++ |..+
T Consensus 73 ~~l~~~---~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 73 QALKDT---AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred HHHHhc---CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence 999863 236999999999999999999999999999999999999999999999865 478999999999 7654
No 24
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.94 E-value=9e-27 Score=221.41 Aligned_cols=138 Identities=38% Similarity=0.618 Sum_probs=122.0
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHH-HHHHHHH
Q 005185 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA-RFYKWFT 187 (710)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~-~F~~~L~ 187 (710)
|+|+|+|||||.+|+.|++++.+++ ..++++++++++.+ ..++..++.++|++||||+|+||+++. .|.+|+.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~g--~~~~~~~~~~~~~~----~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~ 74 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRERG--VEVRVVDLDDFDDS----PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLE 74 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHTT--SEEEEEEGGGSCHH----HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHH
T ss_pred CEEECCchhHHHHHHHHHHHHHHcC--Cceeeechhhhhhh----hhhhhhhceeeEeecccCCCcchhhhhhhhhhccc
Confidence 8999999999999999999999875 56789999998842 246889999999999999999999998 6666776
Q ss_pred hhc--CCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHH
Q 005185 188 EQK--EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAW 252 (710)
Q Consensus 188 ~~~--~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W 252 (710)
... .....+++++|+|||+||+.|.+||.++|.++++|+++|++++.|++++|+.. +.+++|++|
T Consensus 75 ~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 75 LKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp HHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred cccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 431 12346899999999999999988999999999999999999999999999977 789999999
No 25
>PRK07308 flavodoxin; Validated
Probab=99.91 E-value=4.8e-24 Score=203.81 Aligned_cols=140 Identities=24% Similarity=0.285 Sum_probs=118.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
|+++.|+|+|+|||||++|+.|++.+.+.+ ..+++.|+++.+. .++.+++.+||++||||+|++|+++..|+
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~g--~~~~~~~~~~~~~------~~l~~~d~vi~g~~t~g~G~~p~~~~~fl 72 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRELG--HDVDVDECTTVDA------SDFEDADIAIVATYTYGDGELPDEIVDFY 72 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhCC--CceEEEecccCCH------hHhccCCEEEEEeCccCCCCCCHHHHHHH
Confidence 457999999999999999999999998765 4567888887764 34778899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCC--chhhHHHHHHHH
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC--IEDDFSAWRELV 256 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~--~e~~f~~W~~~l 256 (710)
++|.+. .+++++|+|||+||+.|+|||.+++.++++|.++||+++.+....+...+ ..+...+|.++|
T Consensus 73 ~~l~~~-----~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 142 (146)
T PRK07308 73 EDLADL-----DLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEEL 142 (146)
T ss_pred HHHhcC-----CCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 999764 48899999999999999999999999999999999999988776655432 233445565554
No 26
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.91 E-value=3e-24 Score=218.33 Aligned_cols=185 Identities=28% Similarity=0.463 Sum_probs=140.9
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEe
Q 005185 476 KPPLGVFFAAIVPR---LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 548 (710)
Q Consensus 476 ~~p~~~~l~~i~p~---l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~ 548 (710)
...+|||+.+.+|. ..+|+|||+|+| .++++|+.+ ..|.+|+||.++.+|+ .+.|.+|
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~---------~~G~~s~~l~~~~~G~------~v~i~gP 86 (223)
T cd00322 22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIV---------PGGPFSAWLHDLKPGD------EVEVSGP 86 (223)
T ss_pred CcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEe---------CCCchhhHHhcCCCCC------EEEEECC
Confidence 34679998765553 578999999998 345444332 2599999999987665 6788889
Q ss_pred cCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEE
Q 005185 549 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 628 (710)
Q Consensus 549 ~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 628 (710)
.|+|.++....+|+||||+|||||||+++++++..... .++++||||+|+.+ |++|.+||+++++.+..++++++
T Consensus 87 ~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 161 (223)
T cd00322 87 GGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADKP----GGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVLA 161 (223)
T ss_pred CcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhCC----CCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEE
Confidence 99997665667899999999999999999999876531 26899999999997 99999999999988888899999
Q ss_pred EecCCCCcccccchhhcchhHHhhc-ccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 629 FSREGPTKEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 629 ~Sr~~~~k~yVq~~l~~~~~~v~~~-l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
++|++....+.++.+.......... ...+..+|+||| ++|++.+.+.|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~g 214 (223)
T cd00322 162 LSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGP-PAMAKAVREALVSLG 214 (223)
T ss_pred ecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 9987654444443332111111111 135789999999 899999999987643
No 27
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.91 E-value=2.3e-24 Score=223.97 Aligned_cols=183 Identities=20% Similarity=0.239 Sum_probs=134.0
Q ss_pred CChHHHHHHhcC---CCcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEec-
Q 005185 477 PPLGVFFAAIVP---RLQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ- 549 (710)
Q Consensus 477 ~p~~~~l~~i~p---~l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~- 549 (710)
.-+|||+.+.++ ....|+|||+|+| .++++++.+ ..|.+|+||+++.+|+ .+.|..+.
T Consensus 31 ~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~gp~~ 95 (248)
T PRK10926 31 FTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTV---------PEGKLSPRLAALKPGD------EVQVVSEAA 95 (248)
T ss_pred CCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEe---------CCCCcChHHHhCCCCC------EEEEecCCC
Confidence 457999764432 2236999999998 344444332 4699999999887766 57777765
Q ss_pred CCCcCCCC-CCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcC-CCcEEEE
Q 005185 550 SNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLIV 627 (710)
Q Consensus 550 g~F~lp~~-~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~-~~~~l~~ 627 (710)
|.|.++.. ..+|+||||+|||||||+||++++...+. .++++||||+|+.+ |++|++||+++++.. ..+++++
T Consensus 96 g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~v~~ 170 (248)
T PRK10926 96 GFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLER----FKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLRIQT 170 (248)
T ss_pred cceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCC----CCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEEEEE
Confidence 56777643 34799999999999999999998764332 26899999999997 999999999998875 3568999
Q ss_pred EEecCCC---Ccccccchhhcch-hHHhh-cc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 628 AFSREGP---TKEYVQHKMMEKS-SDIWN-ML-SEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 628 a~Sr~~~---~k~yVq~~l~~~~-~~v~~-~l-~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
++||++. .+++|++.+.+.. ..... .+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 171 ~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 171 VVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKET 228 (248)
T ss_pred EECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHHh
Confidence 9998653 2567776554321 11111 11 24688999999 89999999888653
No 28
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.91 E-value=1.6e-24 Score=229.59 Aligned_cols=174 Identities=19% Similarity=0.378 Sum_probs=133.2
Q ss_pred ccccccCCCC----ceEEEEEEEEeeCCCC--cccCCccchhhhccCCCCCCCCCceEEEEEecCCCcCCCCCCCCeEEE
Q 005185 492 PRYYSISSSP----RIHVTCALVYEKTPTG--RVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 565 (710)
Q Consensus 492 pR~YSIsSsp----~i~~tv~~v~~~~~~g--~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~lp~~~~~piImI 565 (710)
.|+|||+|+| .+.++|+... .+.+ +...|.+|+||+++.+|+ .+.|.+|.|.|.++. ..+|+|||
T Consensus 86 ~R~ySias~p~~~~~l~l~vk~~~--~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~~vlI 156 (283)
T cd06188 86 SRAYSLANYPAEEGELKLNVRIAT--PPPGNSDIPPGIGSSYIFNLKPGD------KVTASGPFGEFFIKD-TDREMVFI 156 (283)
T ss_pred ccccCcCCCCCCCCeEEEEEEEec--cCCccCCCCCceehhHHhcCCCCC------EEEEECccccccccC-CCCcEEEE
Confidence 4999999998 3555554432 2222 345799999999977765 578888999998863 46799999
Q ss_pred ecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCC------Ccccc
Q 005185 566 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYV 639 (710)
Q Consensus 566 a~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~------~k~yV 639 (710)
|+|||||||++|++++...... ..+++||||+|+.+ |++|.+||++++++++.+++++++|++.. .++||
T Consensus 157 AgGtGItP~~s~l~~~~~~~~~---~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v 232 (283)
T cd06188 157 GGGAGMAPLRSHIFHLLKTLKS---KRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFI 232 (283)
T ss_pred EecccHhHHHHHHHHHHhcCCC---CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceee
Confidence 9999999999999987654321 25899999999997 99999999999988877888888887531 35788
Q ss_pred cchhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 640 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 640 q~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
++.+.+.. +.... ..+..+|+||| ++|++++.+.|.+..
T Consensus 233 ~~~~~~~~--~~~~~~~~~~~vyiCGP-~~m~~~~~~~l~~~G 272 (283)
T cd06188 233 HQVLLENY--LKKHPAPEDIEFYLCGP-PPMNSAVIKMLDDLG 272 (283)
T ss_pred cHHHHHHH--hccCCCCCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 88765532 11111 23568999999 899999999997653
No 29
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.91 E-value=4.9e-24 Score=218.02 Aligned_cols=180 Identities=21% Similarity=0.324 Sum_probs=141.3
Q ss_pred CCCChHHHHHHhcCCCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEEec
Q 005185 475 AKPPLGVFFAAIVPRLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 475 ~~~p~~~~l~~i~p~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v~~ 549 (710)
.+..+|||+.+.+|....|+|||+|.| .+.++|+.+ ..|.+|++|.+ +.+|+ .+.|.+|.
T Consensus 24 ~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP~ 88 (224)
T cd06189 24 LDFLAGQYLDLLLDDGDKRPFSIASAPHEDGEIELHIRAV---------PGGSFSDYVFEELKENG------LVRIEGPL 88 (224)
T ss_pred cccCCCCEEEEEcCCCCceeeecccCCCCCCeEEEEEEec---------CCCccHHHHHHhccCCC------EEEEecCC
Confidence 345689998766666679999999998 344444322 35889999986 66655 57888889
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|.|.++....+++||||+|||||||++++++...... ..+++|+||+|+.. |++|++||+++++++..++++.++
T Consensus 89 G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 163 (224)
T cd06189 89 GDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGS----KRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPVL 163 (224)
T ss_pred ccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCC----CCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEEe
Confidence 9998876667899999999999999999999876432 26799999999997 999999999999887778888889
Q ss_pred ecCCC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 630 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 630 Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
|++++ .++|+++.+.+... + ..+..+|+||| ++|++++.+.|.+.
T Consensus 164 s~~~~~~~g~~g~v~~~l~~~~~---~--~~~~~v~vCGp-~~m~~~~~~~l~~~ 212 (224)
T cd06189 164 SEPEEGWQGRTGLVHEAVLEDFP---D--LSDFDVYACGS-PEMVYAARDDFVEK 212 (224)
T ss_pred CCCCcCCccccccHHHHHHhhcc---C--ccccEEEEECC-HHHHHHHHHHHHHc
Confidence 98643 45777776654311 1 24678999999 89999999999764
No 30
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.90 E-value=6.6e-24 Score=219.09 Aligned_cols=181 Identities=25% Similarity=0.362 Sum_probs=139.1
Q ss_pred CCChHHHHHHhcCCC-cccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhh-ccCCCCCCCCCceEEEEEec
Q 005185 476 KPPLGVFFAAIVPRL-QPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l-~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~i~v~v~~ 549 (710)
...+|||+.+.+|.. ..|+|||+|.| .++++|+. ...|.+|+||+ ++.+|+ .+.|.+|.
T Consensus 35 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~l~l~i~~---------~~~G~~s~~l~~~l~~G~------~v~i~gP~ 99 (238)
T cd06211 35 EFQAGQYVNLQAPGYEGTRAFSIASSPSDAGEIELHIRL---------VPGGIATTYVHKQLKEGD------ELEISGPY 99 (238)
T ss_pred ccCCCCeEEEEcCCCCCccccccCCCCCCCCEEEEEEEE---------CCCCcchhhHhhcCCCCC------EEEEECCc
Confidence 456899987655544 58999999998 35554432 23689999997 566655 57888889
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|+|.++.+..+|+||||+|||||||++++++....+. ..+++||||+|+.+ |++|.+||+++++....++++.++
T Consensus 100 G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 174 (238)
T cd06211 100 GDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD----TRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPAL 174 (238)
T ss_pred cceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC----CCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEEE
Confidence 9998876556899999999999999999999876432 15799999999997 999999999999887777888899
Q ss_pred ecCCC------CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 630 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 630 Sr~~~------~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
||+.. .++|+++.+.+.. ....++..+|+||| ++|++++.+.|.+..
T Consensus 175 s~~~~~~~~~~~~g~v~~~l~~~~----~~~~~~~~vyvCGp-~~m~~~~~~~L~~~G 227 (238)
T cd06211 175 SREPPESNWKGFTGFVHDAAKKHF----KNDFRGHKAYLCGP-PPMIDACIKTLMQGR 227 (238)
T ss_pred CCCCCCcCcccccCcHHHHHHHhc----ccccccCEEEEECC-HHHHHHHHHHHHHcC
Confidence 98642 3467766554321 10124678999999 899999999997653
No 31
>PRK08051 fre FMN reductase; Validated
Probab=99.90 E-value=6.1e-24 Score=218.67 Aligned_cols=180 Identities=17% Similarity=0.217 Sum_probs=136.8
Q ss_pred CCChHHHHHHhcCCCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhh-hccCCCCCCCCCceEEEEEecC
Q 005185 476 KPPLGVFFAAIVPRLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWM-KNSLPMEKSNDCSWAPIFVRQS 550 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L-~~l~~g~~~~~~~~i~v~v~~g 550 (710)
...+|||+.+.+|....|+|||+|.| .++++|+.+ ..|..|.++ .++.+|+ .+.|.+|.|
T Consensus 29 ~~~pGQ~v~l~~~~~~~r~ySias~p~~~~~l~~~v~~~---------~~~~~~~~~~~~l~~G~------~v~v~gP~G 93 (232)
T PRK08051 29 SFRAGQYLMVVMGEKDKRPFSIASTPREKGFIELHIGAS---------ELNLYAMAVMERILKDG------EIEVDIPHG 93 (232)
T ss_pred ccCCCCEEEEEcCCCcceeecccCCCCCCCcEEEEEEEc---------CCCcchHHHHHHcCCCC------EEEEEcCCC
Confidence 45679998665566678999999988 355554332 234445555 4566654 678889999
Q ss_pred CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005185 551 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 630 (710)
Q Consensus 551 ~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 630 (710)
+|.++.+..+|+||||+||||||+++|+++...... ..+++||||+|+.+ |.+|.+||+++++.+..++++.++|
T Consensus 94 ~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~----~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~~ 168 (232)
T PRK08051 94 DAWLREESERPLLLIAGGTGFSYARSILLTALAQGP----NRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVVE 168 (232)
T ss_pred ceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCC----CCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEeC
Confidence 998875556899999999999999999999876432 26799999999998 9999999999998877788998888
Q ss_pred cCCC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHH-HHHH
Q 005185 631 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HTIV 681 (710)
Q Consensus 631 r~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L-~~i~ 681 (710)
+++. .++||++.+.+.. .+ ..+..+|+||| ++|+++|.+.| .+..
T Consensus 169 ~~~~~~~~~~g~v~~~l~~~~---~~--~~~~~vyicGp-~~m~~~v~~~l~~~~G 218 (232)
T PRK08051 169 QPEEGWQGKTGTVLTAVMQDF---GS--LAEYDIYIAGR-FEMAKIARELFCRERG 218 (232)
T ss_pred CCCCCcccceeeehHHHHhhc---cC--cccCEEEEECC-HHHHHHHHHHHHHHcC
Confidence 7643 3677777665431 11 13568999999 89999999988 6643
No 32
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.90 E-value=1.8e-23 Score=232.15 Aligned_cols=181 Identities=17% Similarity=0.257 Sum_probs=135.1
Q ss_pred CChHHHHHHhcC--C--C-cccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEE
Q 005185 477 PPLGVFFAAIVP--R--L-QPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 547 (710)
Q Consensus 477 ~p~~~~l~~i~p--~--l-~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v 547 (710)
..+|||+.+.+| . . .+|+|||+|+| .+.++|+. ...|.+|+||++ +.+|+ .+.|.+
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~---------~~~G~~S~~L~~~l~~Gd------~v~v~g 249 (399)
T PRK13289 185 FKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKR---------EAGGKVSNYLHDHVNVGD------VLELAA 249 (399)
T ss_pred CCCCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEE---------CCCCeehHHHhhcCCCCC------EEEEEc
Confidence 357888865443 1 1 34999999998 34444432 245999999987 77765 578888
Q ss_pred ecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEE
Q 005185 548 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 627 (710)
Q Consensus 548 ~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 627 (710)
|.|.|.++.+..+|+||||+|||||||+||++++..... ..+++||||+|+.+ |++|++||+++++.+..+++++
T Consensus 250 P~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~~~~ 324 (399)
T PRK13289 250 PAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQP----KRPVHFIHAARNGG-VHAFRDEVEALAARHPNLKAHT 324 (399)
T ss_pred CccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcEEEE
Confidence 999999986667899999999999999999999876432 26899999999997 9999999999998887778999
Q ss_pred EEecCCCC----ccccc-chhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 628 AFSREGPT----KEYVQ-HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 628 a~Sr~~~~----k~yVq-~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
++|++... ..|++ .++.+ +.+.+.+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 325 ~~s~~~~~~~~~~~~~~~g~i~~--~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~ 380 (399)
T PRK13289 325 WYREPTEQDRAGEDFDSEGLMDL--EWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLEL 380 (399)
T ss_pred EECCCccccccCCcccccCcccH--HHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 99985431 11222 22221 1222233 24689999999 99999999988764
No 33
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.90 E-value=1.3e-23 Score=228.15 Aligned_cols=178 Identities=19% Similarity=0.290 Sum_probs=139.6
Q ss_pred CChHHHHHHhcCCCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEEecCC
Q 005185 477 PPLGVFFAAIVPRLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQSN 551 (710)
Q Consensus 477 ~p~~~~l~~i~p~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v~~g~ 551 (710)
..+|||+.+.+|....|+|||+|+| .++++|+. ...|.+|+||++ +.+|+ .+.+.+|.|.
T Consensus 132 ~~pGQfv~l~~~~~~~R~ySias~p~~~~~l~~~ik~---------~~~G~~s~~l~~~l~~G~------~v~v~gP~G~ 196 (339)
T PRK07609 132 YLAGQYIEFILKDGKRRSYSIANAPHSGGPLELHIRH---------MPGGVFTDHVFGALKERD------ILRIEGPLGT 196 (339)
T ss_pred cCCCCeEEEECCCCceeeeecCCCCCCCCEEEEEEEe---------cCCCccHHHHHHhccCCC------EEEEEcCcee
Confidence 4578998766565678999999998 34554432 246899999975 66654 5788889999
Q ss_pred CcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEec
Q 005185 552 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 631 (710)
Q Consensus 552 F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr 631 (710)
|.++....+|+||||+|||||||+||+++....+. .++++||||+|+.+ |+++.++|++|+++...++++.++||
T Consensus 197 ~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~----~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~s~ 271 (339)
T PRK07609 197 FFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGI----QRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVVSD 271 (339)
T ss_pred EEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEecC
Confidence 99876667899999999999999999999876432 25799999999997 99899999999888777889999998
Q ss_pred CCC------CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 632 EGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 632 ~~~------~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
+.+ .++||++.+.+.. .+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 272 ~~~~~~~~g~~G~v~~~~~~~~---~~--~~~~~vy~CGp-~~m~~~~~~~l~~~ 320 (339)
T PRK07609 272 ALDDDAWTGRTGFVHQAVLEDF---PD--LSGHQVYACGS-PVMVYAARDDFVAA 320 (339)
T ss_pred CCCCCCccCccCcHHHHHHhhc---cc--ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 421 4577777665431 11 14578999999 89999999988764
No 34
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.90 E-value=1e-23 Score=217.13 Aligned_cols=180 Identities=22% Similarity=0.317 Sum_probs=137.9
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEEec
Q 005185 476 KPPLGVFFAAIVPR-LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 476 ~~p~~~~l~~i~p~-l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v~~ 549 (710)
...+|||+.+.+|. ..+|+|||+|+| .+.++|+. ...|.+|+||.+ +.+|+ .+.|.+|.
T Consensus 34 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~~~~l~~~i~~---------~~~G~~s~~l~~~~~~Gd------~v~i~gP~ 98 (236)
T cd06210 34 EFVPGQFVEIEIPGTDTRRSYSLANTPNWDGRLEFLIRL---------LPGGAFSTYLETRAKVGQ------RLNLRGPL 98 (236)
T ss_pred CcCCCCEEEEEcCCCccceecccCCCCCCCCEEEEEEEE---------cCCCccchhhhhCcCCCC------EEEEecCc
Confidence 35679998665553 357999999998 24444332 235899999998 66655 57888899
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|.|.++.+..+++||||+|||||||+++++++..... ..+++||||+|+.+ |++|.+||+++++.+..+++++++
T Consensus 99 G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 173 (236)
T cd06210 99 GAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGE----PQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRICV 173 (236)
T ss_pred ceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCC----CceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEEE
Confidence 9999876556789999999999999999999876432 25799999999997 999999999999887788899999
Q ss_pred ecCCC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 630 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 630 Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
||++. .++++++.+.+.. .+ ......+|+||| ++|++++++.|.+.
T Consensus 174 s~~~~~~~~~~g~~~~~l~~~l---~~-~~~~~~vyicGp-~~m~~~~~~~l~~~ 223 (236)
T cd06210 174 WRPGGEWEGYRGTVVDALREDL---AS-SDAKPDIYLCGP-PGMVDAAFAAAREA 223 (236)
T ss_pred cCCCCCcCCccCcHHHHHHHhh---cc-cCCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 97542 3456666554321 11 123568999999 89999999988764
No 35
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.90 E-value=2e-23 Score=232.17 Aligned_cols=177 Identities=19% Similarity=0.346 Sum_probs=138.0
Q ss_pred CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCCCcCCCCCCCCeEEE
Q 005185 490 LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 565 (710)
Q Consensus 490 l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~lp~~~~~piImI 565 (710)
...|+|||+|.| .++++|+........++...|.+|+||+++.+|+ .+.|..|.|+|.++ +..+|+|||
T Consensus 208 ~~~R~ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~-~~~~~ivlI 280 (409)
T PRK05464 208 PVIRAYSMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGD------KVTISGPFGEFFAK-DTDAEMVFI 280 (409)
T ss_pred ceeeeeccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCC------EEEEEccccCcEec-CCCceEEEE
Confidence 357999999998 4666666554434445567899999999887765 57888999999876 356899999
Q ss_pred ecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCC------Ccccc
Q 005185 566 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYV 639 (710)
Q Consensus 566 a~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~------~k~yV 639 (710)
|+|||||||+||+++.+..... ..+++||||+|+.+ |++|.+||+++++++..+++++++|++.. .++++
T Consensus 281 AgGtGIaP~~sml~~~l~~~~~---~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v 356 (409)
T PRK05464 281 GGGAGMAPMRSHIFDQLKRLKS---KRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFI 356 (409)
T ss_pred EeccChhHHHHHHHHHHhCCCC---CceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCcccee
Confidence 9999999999999987764321 26899999999997 99999999999988888889999987532 35778
Q ss_pred cchhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 640 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 640 q~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
++.+.+.. +.+.. ..+..||+||| ++|++++.+.|.+.
T Consensus 357 ~~~l~~~~--l~~~~~~~~~~vyiCGP-~~m~~av~~~L~~~ 395 (409)
T PRK05464 357 HNVLYENY--LKDHEAPEDCEYYMCGP-PMMNAAVIKMLKDL 395 (409)
T ss_pred CHHHHHhh--hhhcCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 77765431 11111 24578999999 89999999998764
No 36
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.90 E-value=2.9e-23 Score=213.27 Aligned_cols=182 Identities=22% Similarity=0.218 Sum_probs=137.9
Q ss_pred CCChHHHHHHhcCCC-cccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhcc-CCCCCCCCCceEEEEEec
Q 005185 476 KPPLGVFFAAIVPRL-QPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l-~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l-~~g~~~~~~~~i~v~v~~ 549 (710)
...+|||+.+.+|.. .+|+|||+|.| .++++|+. ...|.+|.||++. .+|+ .+.|.+|.
T Consensus 23 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~~~~~vk~---------~~~G~~s~~l~~~~~~g~------~v~v~gP~ 87 (232)
T cd06190 23 DFLPGQYALLALPGVEGARAYSMANLANASGEWEFIIKR---------KPGGAASNALFDNLEPGD------ELELDGPY 87 (232)
T ss_pred ccCCCCEEEEECCCCCcccCccCCcCCCCCCEEEEEEEE---------cCCCcchHHHhhcCCCCC------EEEEECCc
Confidence 356789987666665 68999999988 34444432 2358899999874 5554 57888888
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|.|.++.+..+++||||+|||||||++++++...... ....+++|+||+|+.+ |++|.+||+++.+.+..+++++++
T Consensus 88 G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~--~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 164 (232)
T cd06190 88 GLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY--LSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPAV 164 (232)
T ss_pred ccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc--CCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEEe
Confidence 9988765556799999999999999999999876421 1126899999999997 999999999999887778888888
Q ss_pred ecCCC--------CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 630 SREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 630 Sr~~~--------~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
|+++. .++|+++.+.+.. .....+..||+||| ++|++++.+.|.+.
T Consensus 165 s~~~~~~~~~~~~~~g~v~~~l~~~~----~~~~~~~~vyiCGp-~~m~~~v~~~l~~~ 218 (232)
T cd06190 165 SDAGSGSAAGWDGPTGFVHEVVEATL----GDRLAEFEFYFAGP-PPMVDAVQRMLMIE 218 (232)
T ss_pred CCCCCCcCCCccCCcCcHHHHHHhhc----cCCccccEEEEECC-HHHHHHHHHHHHHh
Confidence 87642 2356665544321 11124679999999 89999999988765
No 37
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.90 E-value=1.5e-23 Score=216.87 Aligned_cols=185 Identities=19% Similarity=0.263 Sum_probs=139.9
Q ss_pred CChHHHHHHhcCCC----cccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEE-Ee
Q 005185 477 PPLGVFFAAIVPRL----QPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-VR 548 (710)
Q Consensus 477 ~p~~~~l~~i~p~l----~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~-v~ 548 (710)
..+|||+.+-+|.. ..|+|||+|.| .+.++|+.+ ..|.+|+||+++.+|+ .+.+. ++
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~---------~~G~~s~~l~~l~~Gd------~v~v~~gP 89 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILV---------PDGPLTPRLFKLKPGD------TIYVGKKP 89 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEe---------cCCCCchHHhcCCCCC------EEEECcCC
Confidence 45789876544432 46999999998 345444332 3699999999887766 57788 78
Q ss_pred cCCCcCCCC-CCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHc-CCCcEEE
Q 005185 549 QSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQLI 626 (710)
Q Consensus 549 ~g~F~lp~~-~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~-~~~~~l~ 626 (710)
.|.|.++.. ..++++|||+|||||||++++++...... .++++||||+|+.+ |++|.+||++++++ ...++++
T Consensus 90 ~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~ 164 (241)
T cd06195 90 TGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWER----FDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFRYV 164 (241)
T ss_pred CCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCC----CCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEEEE
Confidence 899988765 45799999999999999999999875332 26899999999997 99999999999887 5567888
Q ss_pred EEEecCCCC---cccccchhhcc-hhHHhhc--ccCCcEEEEecCchhhHHHHHHHHHHHHH
Q 005185 627 VAFSREGPT---KEYVQHKMMEK-SSDIWNM--LSEGAYLYVCGDAKSMARDVHRTLHTIVQ 682 (710)
Q Consensus 627 ~a~Sr~~~~---k~yVq~~l~~~-~~~v~~~--l~~~~~iyvCGpa~~M~~~V~~~L~~i~~ 682 (710)
.+++|++.. ++|+++.+... ....... ...+..||+||| ++|++++.+.|.+...
T Consensus 165 ~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G~ 225 (241)
T cd06195 165 PIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEKGF 225 (241)
T ss_pred EEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 888987653 57888766521 1111111 124678999999 8999999999877543
No 38
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.89 E-value=3.9e-23 Score=211.82 Aligned_cols=178 Identities=24% Similarity=0.359 Sum_probs=138.3
Q ss_pred CCChHHHHHHhcCCC-cccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEEecC
Q 005185 476 KPPLGVFFAAIVPRL-QPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 550 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l-~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v~~g 550 (710)
...+|||+.+.+|.. ..|+|||+|.| .++++|+. ...|.+|+||++ +.+|+ .+.|.+|.|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~~~i~~~i~~---------~~~G~~s~~l~~~l~~G~------~v~v~gP~G 94 (228)
T cd06209 30 AFLPGQYVNLQVPGTDETRSYSFSSAPGDPRLEFLIRL---------LPGGAMSSYLRDRAQPGD------RLTLTGPLG 94 (228)
T ss_pred ccCCCCEEEEEeCCCCcccccccccCCCCCeEEEEEEE---------cCCCcchhhHHhccCCCC------EEEEECCcc
Confidence 346799987655544 47999999998 34443322 246999999998 66655 577888889
Q ss_pred CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005185 551 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 630 (710)
Q Consensus 551 ~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 630 (710)
.|.++.. .+|++|||+|||||||++++++..... ..++++|+||+|+.+ |++|.+||+++.+....+++++++|
T Consensus 95 ~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~s 168 (228)
T cd06209 95 SFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAEDG----SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTVVA 168 (228)
T ss_pred cceecCC-CCeEEEEEcccCHhHHHHHHHHHHhcC----CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEEEc
Confidence 9887643 488999999999999999999987643 226899999999997 9999999999998877788889999
Q ss_pred cCCC---CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 631 REGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 631 r~~~---~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
++.. .++|+++.+.+.. +...+..+|+||| ++|++++++.|.+.
T Consensus 169 ~~~~~~~~~g~v~~~~~~~~-----~~~~~~~v~icGp-~~m~~~~~~~l~~~ 215 (228)
T cd06209 169 DPDSWHPRKGYVTDHLEAED-----LNDGDVDVYLCGP-PPMVDAVRSWLDEQ 215 (228)
T ss_pred CCCccCCCcCCccHHHHHhh-----ccCCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 8653 4568887665431 1124578999999 89999999999764
No 39
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.89 E-value=3.5e-23 Score=229.90 Aligned_cols=177 Identities=18% Similarity=0.345 Sum_probs=135.1
Q ss_pred CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCCCcCCCCCCCCeEEE
Q 005185 490 LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 565 (710)
Q Consensus 490 l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~lp~~~~~piImI 565 (710)
...|+|||+|+| .++++++.+.......+.+.|.+|+||+++.+|+ .+.|..|.|.|.+.. ..+|+|||
T Consensus 204 ~~~R~ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~lvlI 276 (405)
T TIGR01941 204 ETVRAYSMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGD------KVTISGPFGEFFAKD-TDAEMVFI 276 (405)
T ss_pred ccceeecCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcC------EEEEEeccCCCeecC-CCCCEEEE
Confidence 346999999998 4666665542222222356799999999987765 678899999998763 46899999
Q ss_pred ecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCC------Ccccc
Q 005185 566 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYV 639 (710)
Q Consensus 566 a~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~------~k~yV 639 (710)
|+|||||||++|+++....... ..+++||||+|+++ |++|.+||+++.+.+..+++++++|++++ .+++|
T Consensus 277 AgGtGIaP~lsmi~~~l~~~~~---~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v 352 (405)
T TIGR01941 277 GGGAGMAPMRSHIFDQLKRLKS---KRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFI 352 (405)
T ss_pred ecCcCcchHHHHHHHHHhcCCC---CCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCcccee
Confidence 9999999999999987654221 25799999999997 99999999999988888888989887532 35678
Q ss_pred cchhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 640 QHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 640 q~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
++.+.+.. +.... ..++.+|+||| ++|++++.+.|.+.
T Consensus 353 ~~~l~~~~--l~~~~~~~~~~vylCGP-~~m~~av~~~L~~~ 391 (405)
T TIGR01941 353 HNVLYENY--LKDHDAPEDCEFYMCGP-PMMNAAVIKMLEDL 391 (405)
T ss_pred CHHHHHhh--hcccCCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 77664321 11111 24678999999 89999999988764
No 40
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.89 E-value=2.6e-23 Score=212.29 Aligned_cols=178 Identities=22% Similarity=0.314 Sum_probs=138.8
Q ss_pred CChHHHHHHhcCCC--cccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEEec
Q 005185 477 PPLGVFFAAIVPRL--QPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 477 ~p~~~~l~~i~p~l--~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v~~ 549 (710)
..+|||+.+.+|.. ..|+|||+|.| .++++|+. ...|.+|+||.+ +.+|+ .+.|.+|.
T Consensus 24 ~~pGq~i~l~~~~~~~~~r~ysi~s~~~~~~~~~~~i~~---------~~~G~~s~~l~~~l~~G~------~v~i~gP~ 88 (224)
T cd06187 24 FWAGQYVNVTVPGRPRTWRAYSPANPPNEDGEIEFHVRA---------VPGGRVSNALHDELKVGD------RVRLSGPY 88 (224)
T ss_pred cCCCceEEEEcCCCCCcceeccccCCCCCCCEEEEEEEe---------CCCCcchHHHhhcCccCC------EEEEeCCc
Confidence 45789987655543 37999999988 24444432 136999999998 77765 67888899
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|.|.++.+..+++||||+|||||||++|++++.... ...+++|||++|+.+ |++|.+||+++.+....+++++++
T Consensus 89 G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~----~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 163 (224)
T cd06187 89 GTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG----EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVPVV 163 (224)
T ss_pred cceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC----CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEEEe
Confidence 999887655688999999999999999999987643 126899999999997 999999999999887777888888
Q ss_pred ecCCC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 630 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 630 Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
++++. .++|+++.+.+... + ..++.+|+||| ++|++++.+.|.+.
T Consensus 164 ~~~~~~~~~~~g~~~~~~~~~~~---~--~~~~~v~vcGp-~~~~~~v~~~l~~~ 212 (224)
T cd06187 164 SHEEGAWTGRRGLVTDVVGRDGP---D--WADHDIYICGP-PAMVDATVDALLAR 212 (224)
T ss_pred CCCCCccCCCcccHHHHHHHhcc---c--cccCEEEEECC-HHHHHHHHHHHHHc
Confidence 87542 45788777654311 1 24689999999 89999999998764
No 41
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.89 E-value=4.3e-23 Score=211.92 Aligned_cols=183 Identities=19% Similarity=0.307 Sum_probs=133.7
Q ss_pred CChHHHHHHhcC---CCcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhh-ccCCCCCCCCCceEEEEEec
Q 005185 477 PPLGVFFAAIVP---RLQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 477 ~p~~~~l~~i~p---~l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~i~v~v~~ 549 (710)
..+|||+.+.++ ...+|+|||+|.| .+.++|+.+ ..|.+|+||+ ++.+|+ .+.|.+|.
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd------~v~i~gP~ 92 (231)
T cd06191 28 FRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRV---------PGGRVSNYLREHIQPGM------TVEVMGPQ 92 (231)
T ss_pred CCCCCeEEEEEecCCeEEeeeeeccCCCCCCeEEEEEEEC---------CCCccchHHHhcCCCCC------EEEEeCCc
Confidence 457898865433 2347999999988 445444322 3588999998 576765 57888899
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|.|.++.....++||||+||||||+++++++...... ..+++||||+|+.+ |++|.+||++++++...+++++++
T Consensus 93 G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (231)
T cd06191 93 GHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAP----ESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLCIF 167 (231)
T ss_pred cceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCC----CCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEE
Confidence 9999876566789999999999999999999875432 26899999999997 999999999999877778899999
Q ss_pred ecCCCCcccccchhhcchhHHhhccc--CCcEEEEecCchhhHHHHHHHHHHH
Q 005185 630 SREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 630 Sr~~~~k~yVq~~l~~~~~~v~~~l~--~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
||++....+..++..........++. .++.+|+||| ++|++++++.|.+.
T Consensus 168 s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vyicGp-~~mv~~~~~~l~~~ 219 (231)
T cd06191 168 TRETLDSDLLHGRIDGEQSLGAALIPDRLEREAFICGP-AGMMDAVETALKEL 219 (231)
T ss_pred CCCCCCccccCCcccccHHHHHHhCccccCCeEEEECC-HHHHHHHHHHHHHc
Confidence 98754322222221111111111221 3578999999 89999999988654
No 42
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.89 E-value=5e-23 Score=223.61 Aligned_cols=179 Identities=19% Similarity=0.325 Sum_probs=139.6
Q ss_pred CCChHHHHHHhcCCCc-ccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEEec
Q 005185 476 KPPLGVFFAAIVPRLQ-PRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l~-pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v~~ 549 (710)
...+|||+.+.+|... .|+|||+|+| .++++|+.+ ..|.+|+||++ +.+|+ .+.|.+|.
T Consensus 136 ~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~------~v~i~gP~ 200 (340)
T PRK11872 136 DFLPGQYARLQIPGTDDWRSYSFANRPNATNQLQFLIRLL---------PDGVMSNYLRERCQVGD------EILFEAPL 200 (340)
T ss_pred CcCCCCEEEEEeCCCCceeecccCCCCCCCCeEEEEEEEC---------CCCcchhhHhhCCCCCC------EEEEEcCc
Confidence 3467999876556443 7999999998 355555432 46889999975 66655 57888899
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|.|.++. ..+|+||||+|||||||++|++++...+. .++++||||+|+++ |++|.+||++|+++...++++.++
T Consensus 201 G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~~ 274 (340)
T PRK11872 201 GAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQGC----SPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPVV 274 (340)
T ss_pred ceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHcCC----CCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEEE
Confidence 9999864 45899999999999999999999876432 26899999999997 999999999999888888999998
Q ss_pred ecCCC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 630 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 630 Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
|+++. .++||++.+.+.. +......+|+||| ++|++++.+.|.+.+
T Consensus 275 s~~~~~~~g~~g~v~~~l~~~~-----l~~~~~~vy~CGp-~~mv~~~~~~L~~~G 324 (340)
T PRK11872 275 SKASADWQGKRGYIHEHFDKAQ-----LRDQAFDMYLCGP-PPMVEAVKQWLDEQA 324 (340)
T ss_pred eCCCCcCCCceeeccHHHHHhh-----cCcCCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 87542 4578887765421 1123467999999 999999999997653
No 43
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.89 E-value=5.5e-23 Score=222.68 Aligned_cols=181 Identities=15% Similarity=0.270 Sum_probs=136.0
Q ss_pred CChHHHHHHhcCC--CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhh-ccCCCCCCCCCceEEEEEec
Q 005185 477 PPLGVFFAAIVPR--LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 477 ~p~~~~l~~i~p~--l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~i~v~v~~ 549 (710)
.-+|||+.+-+|. ...|+|||+|+| .+.++|+. ...|.+|+||+ ++.+|+ .+.|..|.
T Consensus 37 f~pGQfv~l~~~~~~~~~R~ySias~p~~~~~l~i~Vk~---------~~~G~~S~~L~~~l~~Gd------~v~v~gP~ 101 (332)
T PRK10684 37 YRAGQYALVSIRNSAETLRAYTLSSTPGVSEFITLTVRR---------IDDGVGSQWLTRDVKRGD------YLWLSDAM 101 (332)
T ss_pred cCCCCEEEEEecCCCEeeeeecccCCCCCCCcEEEEEEE---------cCCCcchhHHHhcCCCCC------EEEEeCCc
Confidence 4578987654442 235999999998 35555543 24689999997 566655 57788889
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|+|.++....+|+||||+|||||||+||+++...... ..+++||||+|+.+ |++|.+||++++++...+++++..
T Consensus 102 G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~----~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 176 (332)
T PRK10684 102 GEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP----QADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTLVA 176 (332)
T ss_pred cccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC----CCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEEEe
Confidence 9999876666899999999999999999998865432 26899999999997 999999999999887766777776
Q ss_pred ecCCCCcccccchhhcchhHHhhccc--CCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 630 SREGPTKEYVQHKMMEKSSDIWNMLS--EGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 630 Sr~~~~k~yVq~~l~~~~~~v~~~l~--~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
++++ .++|.++++.+. .+.+.+. .+..+|+||| ++|++++.+.|.+..
T Consensus 177 ~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~G 226 (332)
T PRK10684 177 ENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKALG 226 (332)
T ss_pred ccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 6543 345666665432 1122121 3578999999 899999999987653
No 44
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.89 E-value=3.5e-23 Score=212.71 Aligned_cols=180 Identities=22% Similarity=0.338 Sum_probs=137.6
Q ss_pred CCChHHHHHHhcCCC-cccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEEec
Q 005185 476 KPPLGVFFAAIVPRL-QPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l-~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v~~ 549 (710)
...+|||+.+.+|.. ..|+|||+|+| .+.++++. ...|.+|+||.+ +.+|+ .+.+.+|.
T Consensus 29 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~l~l~vk~---------~~~G~~s~~l~~~l~~G~------~v~i~gP~ 93 (232)
T cd06212 29 KFFAGQYVDITVPGTEETRSFSMANTPADPGRLEFIIKK---------YPGGLFSSFLDDGLAVGD------PVTVTGPY 93 (232)
T ss_pred CcCCCCeEEEEcCCCCcccccccCCCCCCCCEEEEEEEE---------CCCCchhhHHhhcCCCCC------EEEEEcCc
Confidence 345789986655543 57999999998 34444432 235899999997 66655 57888899
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|.|.++....+++||||+|||||||++++++...... .++++|+||+|+.. |++|.+||+++++....+++++++
T Consensus 94 G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 168 (232)
T cd06212 94 GTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGS----DRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPAL 168 (232)
T ss_pred ccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCC----CCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEEE
Confidence 9998876556799999999999999999999876432 26799999999997 999999999999877777888889
Q ss_pred ecCCC------CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 630 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 630 Sr~~~------~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
|++.. ..+++++.+.+.. .+ ..+..+|+||| ++|++++.+.|.+.+
T Consensus 169 s~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~~~v~~CGp-~~~~~~v~~~l~~~G 220 (232)
T cd06212 169 SESPDDEGWSGETGLVTEVVQRNE---AT--LAGCDVYLCGP-PPMIDAALPVLEMSG 220 (232)
T ss_pred CCCCCCCCCcCCcccHHHHHHhhc---cC--ccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 98542 2456665443321 11 14678999999 899999999987653
No 45
>PRK06703 flavodoxin; Provisional
Probab=99.89 E-value=3e-22 Score=192.48 Aligned_cols=146 Identities=19% Similarity=0.192 Sum_probs=122.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
|++++|+|+|+||||+.+|+.|++++.+.+ ..+++.++++.+. .++.+++.+||++||||+|++|+++..|+
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFD--HEVVLQEMDGMDA------EELLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcC--CceEEEehhhCCH------HHHhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 568999999999999999999999998765 4577888887664 34788999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCC---CchhhHHHHHHHHHHHH
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPEL 260 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~---~~e~~f~~W~~~l~~~L 260 (710)
++|... .+++++++|||+||+.|++||.+++.++++|+++|++.+.+....+... ...+...+|.++|...+
T Consensus 73 ~~l~~~-----~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 147 (151)
T PRK06703 73 EDLENI-----DLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKF 147 (151)
T ss_pred HHHhcC-----CCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHH
Confidence 999754 4789999999999999999999999999999999999887765544332 23445778888876655
Q ss_pred Hh
Q 005185 261 DN 262 (710)
Q Consensus 261 ~~ 262 (710)
.+
T Consensus 148 ~~ 149 (151)
T PRK06703 148 AQ 149 (151)
T ss_pred Hh
Confidence 43
No 46
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.89 E-value=9e-23 Score=208.20 Aligned_cols=180 Identities=19% Similarity=0.251 Sum_probs=134.2
Q ss_pred CCChHHHHHHhcCCCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhcc-CCCCCCCCCceEEEEEecC
Q 005185 476 KPPLGVFFAAIVPRLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQS 550 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l-~~g~~~~~~~~i~v~v~~g 550 (710)
...+|||+.+.+|....|+|||+|+| .++++++. ...|.+|+||.+. .+|+ .+.|.+|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~~~~~~~~i~~---------~~~G~~s~~l~~~~~~G~------~v~i~gP~G 87 (222)
T cd06194 23 PYLPGQYVNLRRAGGLARSYSPTSLPDGDNELEFHIRR---------KPNGAFSGWLGEEARPGH------ALRLQGPFG 87 (222)
T ss_pred CcCCCCEEEEEcCCCCceeeecCCCCCCCCEEEEEEEe---------ccCCccchHHHhccCCCC------EEEEecCcC
Confidence 34679998766666678999999998 23333322 2358999999984 6654 678888889
Q ss_pred CCcCCC-CCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 551 NFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 551 ~F~lp~-~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
.|.+.. ...++++|||+|||||||+++++++..... .++++||||+|+.+ |++|++||+++++.+..++++.+.
T Consensus 88 ~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 162 (222)
T cd06194 88 QAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH----QGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPCV 162 (222)
T ss_pred CeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC----CccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEEE
Confidence 887653 456799999999999999999999876432 26899999999997 999999999999877777888888
Q ss_pred ecCCCCcc-cccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 630 SREGPTKE-YVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 630 Sr~~~~k~-yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
++++.... +..+.+.+. +. ....+..+|+||| ++|++++++.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~vyicGp-~~m~~~~~~~L~~~ 209 (222)
T cd06194 163 SEGSQGDPRVRAGRIAAH---LP-PLTRDDVVYLCGA-PSMVNAVRRRAFLA 209 (222)
T ss_pred ccCCCCCcccccchhhhh---hc-cccCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 88654321 111222211 11 1235689999999 89999999999764
No 47
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.89 E-value=1e-22 Score=216.34 Aligned_cols=177 Identities=21% Similarity=0.273 Sum_probs=133.0
Q ss_pred CChHHHHHHhcCCCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCC-
Q 005185 477 PPLGVFFAAIVPRLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN- 551 (710)
Q Consensus 477 ~p~~~~l~~i~p~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~- 551 (710)
..+|||+.+.+|....|+|||+|+| .++++|+ +.|.+|+||+++.+|+ .+.|..|.|.
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~~~~~l~l~Ik-----------~~G~~S~~L~~l~~Gd------~v~v~gP~G~~ 100 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPTRKGFFELCIR-----------RAGRVTTVIHRLKEGD------IVGVRGPYGNG 100 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCCCCCEEEEEEE-----------eCChHHHHHHhCCCCC------EEEEeCCCCCC
Confidence 4679998665565556999999998 3454442 1388999999887765 5788888887
Q ss_pred CcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEec
Q 005185 552 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 631 (710)
Q Consensus 552 F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr 631 (710)
|.++....+|+||||+|||||||++|++++..... ...+++||||+|+.+ |++|++||++++++...+++++++||
T Consensus 101 f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~---~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s~ 176 (289)
T PRK08345 101 FPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW---KYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVTR 176 (289)
T ss_pred CCcccccCceEEEEecccchhHHHHHHHHHHhcCC---CCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEecC
Confidence 66654445799999999999999999998876431 126899999999997 99999999999887777888999998
Q ss_pred CCCC---------------cccccchhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 632 EGPT---------------KEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 632 ~~~~---------------k~yVq~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
++.. ++++++.+.+. .. ..+..+|+||| ++|++++.+.|.+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~G 235 (289)
T PRK08345 177 DPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINRG 235 (289)
T ss_pred CCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHcC
Confidence 6432 12332222211 11 24568999999 899999999987653
No 48
>PRK12359 flavodoxin FldB; Provisional
Probab=99.88 E-value=5e-22 Score=193.77 Aligned_cols=144 Identities=19% Similarity=0.356 Sum_probs=120.4
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (710)
|++.|+|+|+|||||.+|++|++.+.. ..+++++++++++ +++..++++||++||||.|++|+++..|+.
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~----~~v~v~~i~~~~~------~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~ 70 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGE----ELVDLHNLKDDPP------KLMEQYDVLILGIPTWDFGEIQEDWEAVWD 70 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCC----CeEEEEEcccCCh------hHHccCCEEEEEecccCCCcCcHHHHHHHH
Confidence 589999999999999999999998732 2368888888775 457899999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCC-ch-HHHHHHHHHHHHHHHHcCCccccc-----------------------cccc
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGLGNR-QY-EHFNKIAKVVDEILANQGAKRLVP-----------------------VGLG 239 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds-~Y-~~f~~~~k~ld~~L~~lGa~~l~~-----------------------~g~g 239 (710)
.|.+. .|+|+++||||+||+ .| ++||.+++.++++|.+.||+.+.. +.+.
T Consensus 71 ~l~~~-----dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD 145 (172)
T PRK12359 71 QLDDL-----NLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALD 145 (172)
T ss_pred HHhhC-----CCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEc
Confidence 88764 599999999999998 48 899999999999999999985532 2222
Q ss_pred CCCCC--chhhHHHHHHHHHHHHHhh
Q 005185 240 DDDQC--IEDDFSAWRELVWPELDNL 263 (710)
Q Consensus 240 D~~~~--~e~~f~~W~~~l~~~L~~~ 263 (710)
++++. +++++++|.++|.+++..+
T Consensus 146 ~~nq~~~t~~ri~~W~~~~~~~~~~~ 171 (172)
T PRK12359 146 EVNQYDLSDERIQQWCEQILLEMAEL 171 (172)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHhh
Confidence 23332 6889999999998877543
No 49
>PRK05713 hypothetical protein; Provisional
Probab=99.88 E-value=8.1e-23 Score=219.50 Aligned_cols=172 Identities=17% Similarity=0.220 Sum_probs=128.6
Q ss_pred CChHHHHHHhcCCCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecC-C
Q 005185 477 PPLGVFFAAIVPRLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS-N 551 (710)
Q Consensus 477 ~p~~~~l~~i~p~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g-~ 551 (710)
..+|||+.+..+....|+|||+|+| .++++|+. ...|.+|+||.++.+|+ .+.+..+.| .
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~~~~l~~~I~~---------~~~G~~s~~l~~l~~Gd------~v~l~~p~gg~ 183 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGEDPFLEFHIDC---------SRPGAFCDAARQLQVGD------LLRLGELRGGA 183 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCCCCeEEEEEEE---------cCCCccchhhhcCCCCC------EEEEccCCCCc
Confidence 4578998655455568999999998 34555432 24699999998887766 466666665 5
Q ss_pred CcCCCC-CCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005185 552 FKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 630 (710)
Q Consensus 552 F~lp~~-~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 630 (710)
|.++.+ ..+|+||||||||||||+||+++....+. ..+++|+||+|+.+ |++|.+||++|+++...+++..+.+
T Consensus 184 ~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~----~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~ 258 (312)
T PRK05713 184 LHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGH----QGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELVTA 258 (312)
T ss_pred eEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC----CCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEEEC
Confidence 666544 46899999999999999999999876432 26899999999997 9999999999998777777777665
Q ss_pred cCCCCcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 631 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 631 r~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
+ ++++.+.+. . ....+..+|+||| ++|++++.+.|.+.
T Consensus 259 ~------~~~~~l~~~----~-~~~~~~~vyiCGp-~~mv~~~~~~L~~~ 296 (312)
T PRK05713 259 A------QLPAALAEL----R-LVSRQTMALLCGS-PASVERFARRLYLA 296 (312)
T ss_pred c------chhhhhhhc----c-CCCCCeEEEEeCC-HHHHHHHHHHHHHc
Confidence 3 233333211 0 1124578999999 99999999999754
No 50
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.87 E-value=4.8e-22 Score=206.24 Aligned_cols=177 Identities=20% Similarity=0.316 Sum_probs=134.3
Q ss_pred CChHHHHHHhcC--C---CcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEE
Q 005185 477 PPLGVFFAAIVP--R---LQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 547 (710)
Q Consensus 477 ~p~~~~l~~i~p--~---l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v 547 (710)
..+|||+.+.++ . ...|+|||+|.| .+.++|+. ...|.+|+||++ +.+|+ .+.|.+
T Consensus 37 ~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~~l~~~ik~---------~~~G~~s~~l~~~~~~Gd------~v~i~g 101 (247)
T cd06184 37 FLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKR---------EPGGLVSNYLHDNVKVGD------VLEVSA 101 (247)
T ss_pred CCCCCEEEEEEecCCCCCceeEEeEeccCCCCCeEEEEEEE---------cCCCcchHHHHhcCCCCC------EEEEEc
Confidence 457888765543 2 457999999998 34443321 135999999998 77765 577888
Q ss_pred ecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEE
Q 005185 548 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 627 (710)
Q Consensus 548 ~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 627 (710)
|.|.|.++.+..+++||||+|||||||+++++++..... ..+++||||+|+.+ |.+|++||+++++.+..+++++
T Consensus 102 P~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~ 176 (247)
T cd06184 102 PAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGP----GRPVTFIHAARNSA-VHAFRDELEELAARLPNLKLHV 176 (247)
T ss_pred CCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCC----CCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeEEEE
Confidence 889999876556789999999999999999999876421 26899999999997 8999999999988777778999
Q ss_pred EEecCCCC--------cccccchhhcchhHHhh-cccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 628 AFSREGPT--------KEYVQHKMMEKSSDIWN-MLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 628 a~Sr~~~~--------k~yVq~~l~~~~~~v~~-~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
++|++... .++++.. .+.+ ....+..+|+||| +.|++++++.|.+.
T Consensus 177 ~~s~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~ 231 (247)
T cd06184 177 FYSEPEAGDREEDYDHAGRIDLA------LLRELLLPADADFYLCGP-VPFMQAVREGLKAL 231 (247)
T ss_pred EECCCCcccccccccccCccCHH------HHhhccCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 99986432 2333321 1222 1235789999999 89999999998764
No 51
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.87 E-value=4.7e-22 Score=203.99 Aligned_cols=181 Identities=18% Similarity=0.288 Sum_probs=132.6
Q ss_pred CChHHHHHHhcC---CCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhh-ccCCCCCCCCCceEEEEEe
Q 005185 477 PPLGVFFAAIVP---RLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 548 (710)
Q Consensus 477 ~p~~~~l~~i~p---~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~i~v~v~ 548 (710)
..+|||+.+.+| ....|+|||+|.| .++++|+.. ..|.+|.||+ ++.+|+ .+.|.+|
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~---------~~G~~s~~l~~~~~~G~------~v~i~gP 92 (231)
T cd06215 28 YKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRV---------PGGLVSNWLHDNLKVGD------ELWASGP 92 (231)
T ss_pred cCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEEcC
Confidence 457888865444 2236999999998 355554332 3588999997 566655 5788888
Q ss_pred cCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEE
Q 005185 549 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 628 (710)
Q Consensus 549 ~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 628 (710)
.|.|.++.....++||||+|||||||++++++....+. ..+++||||+|+.+ |++|.+||+++.++...++++++
T Consensus 93 ~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (231)
T cd06215 93 AGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRP----DADIVFIHSARSPA-DIIFADELEELARRHPNFRLHLI 167 (231)
T ss_pred cceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC----CCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEEEE
Confidence 99999875546899999999999999999999876432 25799999999997 99999999999987666788888
Q ss_pred EecCCCC-cccccchhhcchhHHhhcc--cCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 629 FSREGPT-KEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 629 ~Sr~~~~-k~yVq~~l~~~~~~v~~~l--~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
.++++.. ..+.++++.+. .+.+.+ ..+..+|+||| ++|++++++.|.+.
T Consensus 168 ~~~~~~~~~~~~~g~~~~~--~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~~ 219 (231)
T cd06215 168 LEQPAPGAWGGYRGRLNAE--LLALLVPDLKERTVFVCGP-AGFMKAVKSLLAEL 219 (231)
T ss_pred EccCCCCcccccCCcCCHH--HHHHhcCCccCCeEEEECC-HHHHHHHHHHHHHc
Confidence 8876542 22223333221 111122 13468999999 89999999988654
No 52
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.87 E-value=4.9e-22 Score=209.18 Aligned_cols=142 Identities=31% Similarity=0.576 Sum_probs=123.1
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHH
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~ 185 (710)
+=.|||+||||||+++|+.+++.+.+.. ..++++|++ |...| ++ +++++|+++|+-+|+|| +..|+.|
T Consensus 48 ~~~vfy~s~~GtA~~~A~~~~e~~~sld--~~~~llnl~-y~~~d------~p-en~~~~lv~~~~~~~~~--~d~~~~~ 115 (601)
T KOG1160|consen 48 KSKVFYSSLTGTAKKAAKSVHEKLKSLD--ELPKLLNLD-YSDFD------VP-ENALYFLVLPSYDIDPP--LDYFLQW 115 (601)
T ss_pred cceEEEEeccchHHHHHHHHHHHHHhcc--cchhhcCCC-CCccC------CC-cceEEEEEecccCCCCc--HHHHHHH
Confidence 3489999999999999999999998764 347889998 77543 56 77888888888899999 8899999
Q ss_pred HHhhcC----CCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHH
Q 005185 186 FTEQKE----GGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 260 (710)
Q Consensus 186 L~~~~~----~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L 260 (710)
|.+... ++..|++++||||||||+.| ++||..|+++|+|+..|||+|++|+|+||.+. ..+++|+..+...|
T Consensus 116 L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~---~~id~W~~~~~~~L 192 (601)
T KOG1160|consen 116 LEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDS---AKIDEWTSLVAETL 192 (601)
T ss_pred HHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCcccccc---ccHHHHHHHHHHHH
Confidence 997543 56789999999999999997 99999999999999999999999999999884 34559999998887
Q ss_pred Hh
Q 005185 261 DN 262 (710)
Q Consensus 261 ~~ 262 (710)
+.
T Consensus 193 k~ 194 (601)
T KOG1160|consen 193 KD 194 (601)
T ss_pred cC
Confidence 64
No 53
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.87 E-value=6.1e-22 Score=202.95 Aligned_cols=175 Identities=24% Similarity=0.371 Sum_probs=132.4
Q ss_pred CChHHHHHHhcCCC-cccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEEecC
Q 005185 477 PPLGVFFAAIVPRL-QPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFVRQS 550 (710)
Q Consensus 477 ~p~~~~l~~i~p~l-~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v~~g 550 (710)
..+|||+.+.+|.. ..|+|||+|+| .+.++|+. ...|.+|+||.+ +.+|+ .+.|.+|.|
T Consensus 28 ~~pGQ~~~l~~~~~~~~r~ysi~s~~~~~~~l~~~vk~---------~~~G~~s~~l~~~l~~G~------~v~i~gP~G 92 (227)
T cd06213 28 YKAGQYAELTLPGLPAARSYSFANAPQGDGQLSFHIRK---------VPGGAFSGWLFGADRTGE------RLTVRGPFG 92 (227)
T ss_pred cCCCCEEEEEeCCCCcccccccCCCCCCCCEEEEEEEE---------CCCCcchHHHHhcCCCCC------EEEEeCCCc
Confidence 34789986554543 47999999988 34444332 235889999965 55654 678888899
Q ss_pred CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHc-CCCcEEEEEE
Q 005185 551 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS-GALSQLIVAF 629 (710)
Q Consensus 551 ~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~-~~~~~l~~a~ 629 (710)
.|.++. ..+++||||+|||||||+++++++..... ..+++||||+|+++ |.+|.+||+++++. ...++++.++
T Consensus 93 ~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~ 166 (227)
T cd06213 93 DFWLRP-GDAPILCIAGGSGLAPILAILEQARAAGT----KRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPVL 166 (227)
T ss_pred ceEeCC-CCCcEEEEecccchhHHHHHHHHHHhcCC----CCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEEe
Confidence 998864 35789999999999999999999876432 25799999999997 99999999999865 3556788888
Q ss_pred ecCCC------CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 630 SREGP------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 630 Sr~~~------~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
|++.. .++++++.+.+. +..+..+|+||| ++|++++++.|.+.
T Consensus 167 s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~~ 215 (227)
T cd06213 167 SEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRAL 215 (227)
T ss_pred cCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 87632 235666655432 135689999999 89999999888764
No 54
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.87 E-value=6e-22 Score=201.56 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=128.5
Q ss_pred CCChHHHHHHhcCC----CcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEe
Q 005185 476 KPPLGVFFAAIVPR----LQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 548 (710)
Q Consensus 476 ~~p~~~~l~~i~p~----l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~ 548 (710)
...+|||+.+.++. ...|+|||+|+| .+.++|+.+. ..|..|.||.++.+|+ .+.+..|
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~l~~~vk~~~--------~~g~~s~~l~~l~~G~------~v~i~gP 92 (218)
T cd06196 27 DFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYP--------DHDGVTEQLGRLQPGD------TLLIEDP 92 (218)
T ss_pred CCCCCCEEEEEeeCCCCCccccccccccCCCCCeEEEEEEEcC--------CCCcHhHHHHhCCCCC------EEEEECC
Confidence 45689998654442 357999999998 4555554321 1366799999988876 5788888
Q ss_pred cCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEE
Q 005185 549 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVA 628 (710)
Q Consensus 549 ~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 628 (710)
.|+|.++ .|+||||+|||||||+++++++..... ..+++|+||+|+.+ |++|.+||++|.. ++++.+
T Consensus 93 ~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~~~~ 159 (218)
T cd06196 93 WGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKGK----LEGNTLIFANKTEK-DIILKDELEKMLG----LKFINV 159 (218)
T ss_pred ccceEec----CceEEEecCCCcChHHHHHHHHHhCCC----CceEEEEEecCCHH-HHhhHHHHHHhhc----ceEEEE
Confidence 8998753 579999999999999999999876321 25789999999997 9999999999853 356778
Q ss_pred EecCCCCcccccchhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 629 FSREGPTKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 629 ~Sr~~~~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
+||++. ..|.++++.+. .+.+++ ..++.+|+||| ++|++++.+.|.+..
T Consensus 160 ~s~~~~-~~~~~g~~~~~--~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G 209 (218)
T cd06196 160 VTDEKD-PGYAHGRIDKA--FLKQHVTDFNQHFYVCGP-PPMEEAINGALKELG 209 (218)
T ss_pred EcCCCC-CCeeeeEECHH--HHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 888653 34555554321 222233 23578999999 899999999887653
No 55
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.87 E-value=9.8e-22 Score=204.94 Aligned_cols=178 Identities=21% Similarity=0.336 Sum_probs=135.4
Q ss_pred CCChHHHHHHhcCCCcccccccCCCCc----eEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCC
Q 005185 476 KPPLGVFFAAIVPRLQPRYYSISSSPR----IHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 551 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l~pR~YSIsSsp~----i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~ 551 (710)
+..+|||+.+.+|....|+|||+|+|. ++++|+ ..|..|+||+++.+|+ .+.|..|.|.
T Consensus 27 ~~~pGQ~i~l~~~~~~~~pySi~s~~~~~~~l~~~Ik-----------~~G~~S~~L~~l~~G~------~v~i~gP~G~ 89 (253)
T cd06221 27 TFKPGQFVMLSLPGVGEAPISISSDPTRRGPLELTIR-----------RVGRVTEALHELKPGD------TVGLRGPFGN 89 (253)
T ss_pred CcCCCCEEEEEcCCCCccceEecCCCCCCCeEEEEEE-----------eCChhhHHHHcCCCCC------EEEEECCcCC
Confidence 456799987665655569999999992 343332 2388999999877665 5788888887
Q ss_pred -CcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005185 552 -FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 630 (710)
Q Consensus 552 -F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 630 (710)
|.++....+|+||||+||||||++++++++.+.... .++++|||++|+.+ |++|++||+++.+. ..+++.+++|
T Consensus 90 ~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~---~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~~s 164 (253)
T cd06221 90 GFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRED---YGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILTVD 164 (253)
T ss_pred CcccccccCCeEEEEccccchhHHHHHHHHHHhcccc---CCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEEeC
Confidence 665543568999999999999999999998875311 26799999999998 99999999999987 5568888888
Q ss_pred cCCC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 631 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 631 r~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
++.. ..+++++.+.+.. ....+..||+||| +.|++++.+.|.+..
T Consensus 165 ~~~~~~~~~~g~v~~~l~~~~-----~~~~~~~vyicGp-~~mv~~~~~~L~~~G 213 (253)
T cd06221 165 RAEEGWTGNVGLVTDLLPELT-----LDPDNTVAIVCGP-PIMMRFVAKELLKLG 213 (253)
T ss_pred CCCCCccCCccccchhHHhcC-----CCcCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 7643 3466666554421 0125678999999 999999999997654
No 56
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.86 E-value=1.1e-21 Score=214.28 Aligned_cols=185 Identities=19% Similarity=0.316 Sum_probs=133.8
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhh-ccCCCCCCCCCceEEEEEe
Q 005185 476 KPPLGVFFAAIVP---RLQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 548 (710)
Q Consensus 476 ~~p~~~~l~~i~p---~l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~i~v~v~ 548 (710)
...+|||+.+.+| ....|+|||+|+| .+.++|+.+ ..|.+|+||+ ++.+|+ .+.|..|
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~l~i~vk~~---------~~G~~S~~l~~~l~~Gd------~v~v~gP 96 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKI---------PGGLFSTWANDEIRPGD------TLEVMAP 96 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCCCCcEEEEEEEe---------CCCcchHHHHhcCCCCC------EEEEeCC
Confidence 3457999865543 2246999999998 455555432 3589999997 566654 5778888
Q ss_pred cCCCcCCCCC--CCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCC-CcEE
Q 005185 549 QSNFKLPADA--KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQL 625 (710)
Q Consensus 549 ~g~F~lp~~~--~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~-~~~l 625 (710)
.|+|.++.+. .+++||||+|||||||++|+++...... .++++||||+|+.+ |++|.+||+++++... .+++
T Consensus 97 ~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~ 171 (352)
T TIGR02160 97 QGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP----RSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRFHL 171 (352)
T ss_pred ceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCC----CceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcEEE
Confidence 8999886542 3789999999999999999999876432 26899999999997 9999999999987665 4678
Q ss_pred EEEEecCCCCcccccchhhc-chh-HHhhcc--cCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 626 IVAFSREGPTKEYVQHKMME-KSS-DIWNML--SEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 626 ~~a~Sr~~~~k~yVq~~l~~-~~~-~v~~~l--~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
+.++|++.....+.++++.. ... .+.++. .....+|+||| ++|++++++.|.+..
T Consensus 172 ~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~G 230 (352)
T TIGR02160 172 AHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGLG 230 (352)
T ss_pred EEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 88899865432233333311 111 111111 23468999999 899999999998754
No 57
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.86 E-value=7.7e-22 Score=204.30 Aligned_cols=178 Identities=24% Similarity=0.372 Sum_probs=133.9
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCc-----eEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEE
Q 005185 477 PPLGVFFAAIVP---RLQPRYYSISSSPR-----IHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 547 (710)
Q Consensus 477 ~p~~~~l~~i~p---~l~pR~YSIsSsp~-----i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v 547 (710)
..+|||+.+.+| ...+|+|||+|+|. +.++|+. ..+|.+|.||++ +.+|+ .+.|.+
T Consensus 46 ~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~---------~~~G~~s~~l~~~~~~Gd------~v~i~g 110 (243)
T cd06216 46 HRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKA---------QPDGLVSNWLVNHLAPGD------VVELSQ 110 (243)
T ss_pred cCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEE---------cCCCcchhHHHhcCCCCC------EEEEEC
Confidence 357899865443 23479999999873 4444432 135889999986 66655 578888
Q ss_pred ecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEE
Q 005185 548 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 627 (710)
Q Consensus 548 ~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 627 (710)
|.|.|.++.+..+++||||+||||||+++++++..... ...+++||||+|+.+ |.+|.+||+++.+++..+++++
T Consensus 111 P~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~----~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 185 (243)
T cd06216 111 PQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG----PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHL 185 (243)
T ss_pred CceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC----CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEE
Confidence 88999998765689999999999999999999987643 126899999999997 9999999999987777778888
Q ss_pred EEecCCCCcccccchhhcchhHHhhcc--cCCcEEEEecCchhhHHHHHHHHHHHHH
Q 005185 628 AFSREGPTKEYVQHKMMEKSSDIWNML--SEGAYLYVCGDAKSMARDVHRTLHTIVQ 682 (710)
Q Consensus 628 a~Sr~~~~k~yVq~~l~~~~~~v~~~l--~~~~~iyvCGpa~~M~~~V~~~L~~i~~ 682 (710)
.+|++ ..++++...+.+ +.+ ..+..+|+||| ++|++++.+.|++...
T Consensus 186 ~~s~~-~~~g~~~~~~l~------~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~~Gv 234 (243)
T cd06216 186 LYTRE-ELDGRLSAAHLD------AVVPDLADRQVYACGP-PGFLDAAEELLEAAGL 234 (243)
T ss_pred EEcCC-ccCCCCCHHHHH------HhccCcccCeEEEECC-HHHHHHHHHHHHHCCC
Confidence 88876 234555432221 121 13579999999 8999999999876443
No 58
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.86 E-value=2e-21 Score=200.74 Aligned_cols=184 Identities=23% Similarity=0.381 Sum_probs=133.7
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhh-ccCCCCCCCCCceEEEEEe
Q 005185 476 KPPLGVFFAAIVP---RLQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVR 548 (710)
Q Consensus 476 ~~p~~~~l~~i~p---~l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~i~v~v~ 548 (710)
...+|||+.+.+| ...+|+|||+|.| .+++.|+.+ ..|.+|.||. ++.+|+ .+.|.+|
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~~l~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~gP 96 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRV---------PGGRFSNWANDELKAGD------TLEVMPP 96 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCCCcEEEEEEEc---------CCCccchhHHhccCCCC------EEEEeCC
Confidence 4567999876544 2367999999988 344444322 3589999997 566654 5788888
Q ss_pred cCCCcCCCC-CCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCC-CcEEE
Q 005185 549 QSNFKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLI 626 (710)
Q Consensus 549 ~g~F~lp~~-~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~-~~~l~ 626 (710)
.|.|.++.+ ..+++||||+|||||||+++++++..... .++++||||+|+.. |++|.+||+++.+... .+++.
T Consensus 97 ~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~ 171 (241)
T cd06214 97 AGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP----ASRVTLVYGNRTEA-SVIFREELADLKARYPDRLTVI 171 (241)
T ss_pred ccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC----CCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceEEE
Confidence 899988765 46899999999999999999999876432 26899999999997 9999999999987654 56777
Q ss_pred EEEecCCCCcccccchhhcc-hhHHh-hcc--cCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 627 VAFSREGPTKEYVQHKMMEK-SSDIW-NML--SEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 627 ~a~Sr~~~~k~yVq~~l~~~-~~~v~-~~l--~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
.++++++....+..+++.+. ..... +.+ .++..||+||| +.|++++.+.|.+.
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~ 228 (241)
T cd06214 172 HVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGP-EPMMDAVEAALLEL 228 (241)
T ss_pred EEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECC-HHHHHHHHHHHHHc
Confidence 78887654322223333221 11111 111 34578999999 89999999998764
No 59
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.86 E-value=5.8e-22 Score=203.83 Aligned_cols=179 Identities=21% Similarity=0.342 Sum_probs=132.7
Q ss_pred CChHHHHHHhcC--CC--cccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEE
Q 005185 477 PPLGVFFAAIVP--RL--QPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 547 (710)
Q Consensus 477 ~p~~~~l~~i~p--~l--~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v 547 (710)
..+|||+.+.+| .- ..|+|||+|.| .++++|+.+ ..|.+|+||.+ +.+|+ .+.|.+
T Consensus 31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~---------~~G~~s~~l~~~l~~Gd------~v~i~g 95 (235)
T cd06217 31 FLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRV---------PGGEVSPYLHDEVKVGD------LLEVRG 95 (235)
T ss_pred cCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEEeC
Confidence 456899865544 11 24999999998 355555432 35889999987 55654 578888
Q ss_pred ecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEE
Q 005185 548 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 627 (710)
Q Consensus 548 ~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 627 (710)
|.|.|.++....++++|||+||||||+++++++...... ..+++|+||+|+.+ |.+|.+||.++.++...++++.
T Consensus 96 P~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~----~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~~~ 170 (235)
T cd06217 96 PIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW----PVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHVTE 170 (235)
T ss_pred CceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCC----CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEE
Confidence 889998765446789999999999999999999876432 26799999999997 8999999999998766678888
Q ss_pred EEecCCC-----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 628 AFSREGP-----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 628 a~Sr~~~-----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
++||+.. .++++...+.+. +... ..+..+|+||| ++|+++|.+.|.+.
T Consensus 171 ~~s~~~~~~~~~~~g~~~~~~l~~---~~~~-~~~~~v~icGp-~~m~~~v~~~l~~~ 223 (235)
T cd06217 171 ALTRAAPADWLGPAGRITADLIAE---LVPP-LAGRRVYVCGP-PAFVEAATRLLLEL 223 (235)
T ss_pred EeCCCCCCCcCCcCcEeCHHHHHh---hCCC-ccCCEEEEECC-HHHHHHHHHHHHHc
Confidence 8898621 234443332211 1111 24679999999 89999999998765
No 60
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.86 E-value=2e-21 Score=203.64 Aligned_cols=176 Identities=18% Similarity=0.234 Sum_probs=129.3
Q ss_pred CChHHHHHHhcCCCcccccccCCCC--ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCC-Cc
Q 005185 477 PPLGVFFAAIVPRLQPRYYSISSSP--RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FK 553 (710)
Q Consensus 477 ~p~~~~l~~i~p~l~pR~YSIsSsp--~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~-F~ 553 (710)
.-+|||+.+-+|...+|+|||++.+ .+.++|+ ..|.+|+||.++.+|+ .+.|..|.|+ |.
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~~~~~~~~Ik-----------~~G~~S~~L~~l~~Gd------~v~v~gP~G~~f~ 95 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYGDGYIDLTIR-----------RVGKVTDEIFNLKEGD------KLFLRGPYGNGFP 95 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCCCCEEEEEEE-----------eCCchhhHHHhCCCCC------EEEEECCCCCCcc
Confidence 3579998765666567999999977 3444432 1389999999887766 5777778776 87
Q ss_pred CCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCC
Q 005185 554 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 633 (710)
Q Consensus 554 lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~ 633 (710)
++....+|+||||+|||||||+|++++...... ..++++||||+|+.+ |++|++||++|++.. +++++++++.
T Consensus 96 ~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~---~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~~~~ 168 (263)
T PRK08221 96 VDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ---EIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLDEGE 168 (263)
T ss_pred cCccCCccEEEEcccccHHHHHHHHHHHHhCcc---cCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEecCCC
Confidence 766556899999999999999999999865321 225899999999997 999999999998753 3455566543
Q ss_pred C----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 634 P----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 634 ~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
. ..+++++.+.+.. ... ..+..+|+||| ++|++++.+.|.+.+
T Consensus 169 ~~~~~~~G~v~~~l~~~~---~~~-~~~~~vylCGp-~~mv~~~~~~L~~~G 215 (263)
T PRK08221 169 EGYRGNVGLVTKYIPELT---LKD-IDNMQVIVVGP-PIMMKFTVLEFLKRG 215 (263)
T ss_pred CCCccCccccChhhHhcc---CCC-cCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 2 2355654433310 000 14678999999 999999999987653
No 61
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.86 E-value=1.9e-21 Score=208.95 Aligned_cols=181 Identities=11% Similarity=0.139 Sum_probs=125.7
Q ss_pred CCChHHHHHHhcC-C-----CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEE
Q 005185 476 KPPLGVFFAAIVP-R-----LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 545 (710)
Q Consensus 476 ~~p~~~~l~~i~p-~-----l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v 545 (710)
...+||++.+..+ . ...|+|||+|+| .++++|+. ...|.+|+||+++.+|+ .+.|
T Consensus 81 ~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~---------~~~G~~S~~L~~lk~Gd------~v~v 145 (325)
T PTZ00274 81 NLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKR---------KKDGLMTNHLFGMHVGD------KLLF 145 (325)
T ss_pred CCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEE---------cCCCcccHHHhcCCCCC------EEEE
Confidence 4467888864323 1 236999999998 35555543 34699999999987776 4555
Q ss_pred EEecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhh--CCCCCcEEEEEeecCCCcccchHHHHHHHHHcCC-C
Q 005185 546 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--GAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-L 622 (710)
Q Consensus 546 ~v~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~--~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~-~ 622 (710)
..+.+.|.++.+..+|+||||||||||||++|+++.+..+.. .....+++|+||+|+.+ |++|++||+++++... .
T Consensus 146 ~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~~ 224 (325)
T PTZ00274 146 RSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYSNR 224 (325)
T ss_pred eCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCCc
Confidence 554444444444457999999999999999999998765311 11224899999999997 9999999999998765 5
Q ss_pred cEEEEEEecCCC------CcccccchhhcchhHHhhccc-CCcEEEEecCchhhHHHHHHH
Q 005185 623 SQLIVAFSREGP------TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRT 676 (710)
Q Consensus 623 ~~l~~a~Sr~~~------~k~yVq~~l~~~~~~v~~~l~-~~~~iyvCGpa~~M~~~V~~~ 676 (710)
+++++++|++.. ..++|.+.+... +..... .+..+|+||| ++|+++|...
T Consensus 225 f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~---~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 225 FKVYYTIDQAVEPDKWNHFLGYVTKEMVRR---TMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred EEEEEEeCCCCcccCCCCCCCccCHHHHHH---hcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 788888886421 235555443221 111111 2357999999 9999999655
No 62
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.85 E-value=2.6e-21 Score=196.71 Aligned_cols=174 Identities=21% Similarity=0.291 Sum_probs=127.5
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhh-ccCCCCCCCCCceEEEEE
Q 005185 476 KPPLGVFFAAIVPR---LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFV 547 (710)
Q Consensus 476 ~~p~~~~l~~i~p~---l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~i~v~v 547 (710)
...+|||+.+.+|. ...|+|||+|.| .+.++|+ ..|.+|++|. ++.+|+ .+.|.+
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk-----------~~G~~t~~l~~~l~~G~------~v~i~g 84 (216)
T cd06198 22 GHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIK-----------ALGDYTRRLAERLKPGT------RVTVEG 84 (216)
T ss_pred CcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEE-----------eCChHHHHHHHhCCCCC------EEEEEC
Confidence 34578998655453 568999999998 2333332 1377899999 676665 577888
Q ss_pred ecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEE
Q 005185 548 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 627 (710)
Q Consensus 548 ~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 627 (710)
|.|.|.++.. .++++|||+||||||+++++++...... .++++|+||+|+.+ |++|.+||+++.+++ .+++++
T Consensus 85 P~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~----~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~~ 157 (216)
T cd06198 85 PYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARGD----ARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLHV 157 (216)
T ss_pred CCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcCC----CceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEEE
Confidence 8999998765 6899999999999999999999876432 26899999999997 999999999998876 556766
Q ss_pred EEecCCCCcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 628 AFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 628 a~Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
..++++. +......+.+ .. ....+..+|+||| ++|++++++.|.+.
T Consensus 158 ~~~~~~~-~~~~~~~~~~----~~-~~~~~~~vyicGp-~~m~~~v~~~l~~~ 203 (216)
T cd06198 158 IDSPSDG-RLTLEQLVRA----LV-PDLADADVWFCGP-PGMADALEKGLRAL 203 (216)
T ss_pred EeCCCCc-ccchhhhhhh----cC-CCcCCCeEEEECc-HHHHHHHHHHHHHc
Confidence 6554332 1111111100 01 0124678999999 89999999999764
No 63
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.85 E-value=6.5e-21 Score=198.93 Aligned_cols=180 Identities=17% Similarity=0.286 Sum_probs=129.9
Q ss_pred CChHHHHHHhcCCC---cccccccCCCC--ceEEEEEEEEeeCCCCcccCCccchhhh-ccCCCCCCCCCceEEEEEecC
Q 005185 477 PPLGVFFAAIVPRL---QPRYYSISSSP--RIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQS 550 (710)
Q Consensus 477 ~p~~~~l~~i~p~l---~pR~YSIsSsp--~i~~tv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~i~v~v~~g 550 (710)
+-+|||+.+-++.- ..|.|||+|+| .-.+.++|.. ...|..|+||+ ++++|+ .+.|..|.|
T Consensus 35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~-------~~~G~~S~~Lh~~lk~Gd------~l~v~~P~G 101 (266)
T COG1018 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKR-------EDGGGGSNWLHDHLKVGD------TLEVSAPAG 101 (266)
T ss_pred cCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEE-------eCCCcccHHHHhcCCCCC------EEEEecCCC
Confidence 45788887655533 57999999999 2234444432 23499999999 666665 678888899
Q ss_pred CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005185 551 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 630 (710)
Q Consensus 551 ~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 630 (710)
.|.++..+..|++|||+|||||||+||+++....+ . .+++|+|++|+.+ |..|++| +.++.+.+....+..+.
T Consensus 102 ~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~----~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~~~~~ 174 (266)
T COG1018 102 DFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG----P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLLGLYT 174 (266)
T ss_pred CccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC----C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeEEEEE
Confidence 99998766779999999999999999999987643 2 5799999999998 9999999 88887766533333333
Q ss_pred cCCCCcccccchhhcchhHHhhcccCC-cEEEEecCchhhHHHHHHHHHHHHHH
Q 005185 631 REGPTKEYVQHKMMEKSSDIWNMLSEG-AYLYVCGDAKSMARDVHRTLHTIVQE 683 (710)
Q Consensus 631 r~~~~k~yVq~~l~~~~~~v~~~l~~~-~~iyvCGpa~~M~~~V~~~L~~i~~~ 683 (710)
+.+...+|..-.. +...+... ..+|+||| .+|+++|+..|.++...
T Consensus 175 ~~~~~~g~~~~~~------l~~~~~~~~r~~y~CGp-~~fm~av~~~l~~~g~~ 221 (266)
T COG1018 175 ERGKLQGRIDVSR------LLSAAPDGGREVYLCGP-GPFMQAVRLALEALGVP 221 (266)
T ss_pred ecCCccccccHHH------HhccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCC
Confidence 2111222322111 11122223 89999999 89999999999776543
No 64
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.85 E-value=5.7e-21 Score=200.05 Aligned_cols=175 Identities=17% Similarity=0.212 Sum_probs=128.8
Q ss_pred CChHHHHHHhcCCCcccccccCCCC--ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCC-Cc
Q 005185 477 PPLGVFFAAIVPRLQPRYYSISSSP--RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FK 553 (710)
Q Consensus 477 ~p~~~~l~~i~p~l~pR~YSIsSsp--~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~-F~ 553 (710)
.-+|||+.+.+|...+|+|||++.+ .++++|+ ..|.+|++|.++.+|+ .+.|..|.|+ |.
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~~~~l~~~Vk-----------~~G~~S~~L~~l~~Gd------~v~i~gP~G~~f~ 93 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIGEGYIDLTIR-----------RVGKVTDEVFTLKEGD------NLFLRGPYGNGFD 93 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCCCCeEEEEEE-----------eCchhhHHHHcCCCCC------EEEEecCCCCCcc
Confidence 4579998766676678999999965 4554442 1389999999887765 5778888887 87
Q ss_pred CCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCC
Q 005185 554 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 633 (710)
Q Consensus 554 lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~ 633 (710)
++....+|++|||+||||||++++++++..... ..++++||||+|+.+ |++|.+||++|+++. ++...++++.
T Consensus 94 ~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~---~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~~~~ 166 (261)
T TIGR02911 94 VDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK---EIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLDEAE 166 (261)
T ss_pred cCccCCceEEEEecccCcHHHHHHHHHHHhCcc---cCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEcCCC
Confidence 765556899999999999999999998765321 125799999999997 999999999998753 2344455432
Q ss_pred C----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 634 P----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 634 ~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
. ..+++++.+.+.. +.+ ..+..+|+||| ++|++++.+.|.+.
T Consensus 167 ~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp-~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 167 EDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGP-PIMMKFTVQELLKK 212 (261)
T ss_pred CCCcCCeeccCHhHHhcc--CCC--ccceEEEEECC-HHHHHHHHHHHHHc
Confidence 2 2356655443310 001 13578999999 99999999998765
No 65
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.84 E-value=8.8e-21 Score=194.70 Aligned_cols=182 Identities=20% Similarity=0.292 Sum_probs=133.9
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEe
Q 005185 476 KPPLGVFFAAIVPR---LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 548 (710)
Q Consensus 476 ~~p~~~~l~~i~p~---l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~ 548 (710)
...+||++.+.+|. ...|+|||+|+| .+.++|+. ...|.+|.||+++.+|+ .+.|..+
T Consensus 28 ~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~---------~~~G~~s~~l~~~~~G~------~v~i~gP 92 (234)
T cd06183 28 GLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKI---------YPGGKMSQYLHSLKPGD------TVEIRGP 92 (234)
T ss_pred CCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEE---------CCCCcchhHHhcCCCCC------EEEEECC
Confidence 45679998665553 467999999988 24444332 12589999999887765 5778888
Q ss_pred cCCCcCCCCCC-CCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcC-CCcEEE
Q 005185 549 QSNFKLPADAK-VPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLI 626 (710)
Q Consensus 549 ~g~F~lp~~~~-~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~-~~~~l~ 626 (710)
.|.|.++.+.. .++||||+||||||+++++++...... ...+++||||+|+.+ |.+|.+||+++.+.. ..++++
T Consensus 93 ~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~---~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~ 168 (234)
T cd06183 93 FGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE---DKTKISLLYANRTEE-DILLREELDELAKKHPDRFKVH 168 (234)
T ss_pred ccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC---cCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEEEE
Confidence 89998865554 789999999999999999999876421 126899999999997 999999999998763 455777
Q ss_pred EEEecCCCC----cccccchhhcchhHHhhc-ccCCcEEEEecCchhhHH-HHHHHHHHH
Q 005185 627 VAFSREGPT----KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMAR-DVHRTLHTI 680 (710)
Q Consensus 627 ~a~Sr~~~~----k~yVq~~l~~~~~~v~~~-l~~~~~iyvCGpa~~M~~-~V~~~L~~i 680 (710)
+++++++.. .+++++.+.+.. ... ...+..+|+||| ++|++ ++++.|.+.
T Consensus 169 ~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~~ 224 (234)
T cd06183 169 YVLSRPPEGWKGGVGFITKEMIKEH---LPPPPSEDTLVLVCGP-PPMIEGAVKGLLKEL 224 (234)
T ss_pred EEEcCCCcCCccccceECHHHHHHh---CCCCCCCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 788875432 456654432211 110 124578999999 89999 999988653
No 66
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.84 E-value=7.4e-21 Score=197.49 Aligned_cols=168 Identities=20% Similarity=0.301 Sum_probs=125.7
Q ss_pred CChHHHHHHhcCC----CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEe
Q 005185 477 PPLGVFFAAIVPR----LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 548 (710)
Q Consensus 477 ~p~~~~l~~i~p~----l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~ 548 (710)
..+|||+.+.+|. ...|+|||+|.| .+.++++. .|.+|+||.++.+|+ .+.|..|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~-----------~G~~s~~l~~l~~Gd------~v~i~gP 87 (246)
T cd06218 25 AKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKV-----------VGKGTRLLSELKAGD------ELDVLGP 87 (246)
T ss_pred CCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEE-----------ECcchHHHhcCCCCC------EEEEEec
Confidence 4568888665553 357999999987 23433321 377899999988765 6788888
Q ss_pred cCC-CcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEE
Q 005185 549 QSN-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 627 (710)
Q Consensus 549 ~g~-F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 627 (710)
.|. |.++. ..+++||||+|||||||++++++..... .+++|||++|+.+ |.+|++||+++.. ++.+
T Consensus 88 ~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~~~ 154 (246)
T cd06218 88 LGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAERG------IKVTVLLGFRSAD-DLFLVEEFEALGA-----EVYV 154 (246)
T ss_pred CCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhcC------CceEEEEEccchh-hhhhHHHHHhhCC-----cEEE
Confidence 875 77764 4689999999999999999999887521 5799999999997 9999999998843 2332
Q ss_pred EEecCC--CCcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 628 AFSREG--PTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 628 a~Sr~~--~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
+++++ ..++|+++.+.+.... ..+..||+||| ++|++++++.|.+..
T Consensus 155 -~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp-~~mv~~~~~~L~~~G 203 (246)
T cd06218 155 -ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGP-EPMLKAVAELAAERG 203 (246)
T ss_pred -EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 23333 2457888866554221 14689999999 899999999997754
No 67
>PRK09271 flavodoxin; Provisional
Probab=99.84 E-value=2e-20 Score=181.55 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=112.9
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (710)
|+|+|+|+|+|||||++|+.|++.+.+.+ ..+++.++++.+..+. ..++.+++.++|++||||+|.+|+++..|++
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~ 76 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAG--HEVDWVETDVQTLAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIA 76 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCC--CeeEEEeccccccccc--ccCcccCCEEEEECcccCCCcCCHHHHHHHH
Confidence 58999999999999999999999998876 4466777766553221 1245678999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCcccccccccCCCC---CchhhHHHHHHHHHHH
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ---CIEDDFSAWRELVWPE 259 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~---~~e~~f~~W~~~l~~~ 259 (710)
+|.+. ..++++++|||+||+.| ++||.+++.++++|.... |....+... ...+.+.+|..++++.
T Consensus 77 ~l~~~-----~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~~-----~~l~~~~~p~~~~d~~~~~~~~~~~~~~ 146 (160)
T PRK09271 77 ELAET-----IGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSSY-----PRLKIEQMPHGERDAAAIDNWTDKVLAL 146 (160)
T ss_pred HHHHH-----hccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhccC-----CceeeecCCccchhHHHHHHHHHHHHHH
Confidence 99864 24678999999999999 899999999999997542 333222221 2247889999998887
Q ss_pred H
Q 005185 260 L 260 (710)
Q Consensus 260 L 260 (710)
|
T Consensus 147 ~ 147 (160)
T PRK09271 147 C 147 (160)
T ss_pred h
Confidence 7
No 68
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.84 E-value=8.9e-21 Score=202.38 Aligned_cols=190 Identities=16% Similarity=0.197 Sum_probs=130.5
Q ss_pred CChHHHHHHhcCC-------CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEE
Q 005185 477 PPLGVFFAAIVPR-------LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPI 545 (710)
Q Consensus 477 ~p~~~~l~~i~p~-------l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v 545 (710)
..+|||+.+-++. ...|+||++|+| .++++|+.+...........|.+|+||.++.+|+ .+.|
T Consensus 64 ~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i 137 (300)
T PTZ00319 64 LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGD------KIEM 137 (300)
T ss_pred CccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCC------EEEE
Confidence 4578988654432 246999999988 4566665441110001123599999998887766 5788
Q ss_pred EEecCCCcCCCC---------------CCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchH
Q 005185 546 FVRQSNFKLPAD---------------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYE 610 (710)
Q Consensus 546 ~v~~g~F~lp~~---------------~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~ 610 (710)
..|.|.|.++.+ ..+|++|||+|||||||++++++...... ...++.|+||+|+.+ |.+|.
T Consensus 138 ~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~---~~~~i~liyg~r~~~-dl~~~ 213 (300)
T PTZ00319 138 RGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKE---DRTKVFLVYANQTED-DILLR 213 (300)
T ss_pred EccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCC---CCceEEEEEecCCHH-HhhHH
Confidence 888898865421 12589999999999999999998875421 124799999999997 99999
Q ss_pred HHHHHHHHcCCCcEEEEEEecCCC-----CcccccchhhcchhHHhhc-----ccCCcEEEEecCchhhHH-HHHHHHHH
Q 005185 611 DELNNFVQSGALSQLIVAFSREGP-----TKEYVQHKMMEKSSDIWNM-----LSEGAYLYVCGDAKSMAR-DVHRTLHT 679 (710)
Q Consensus 611 dEL~~~~~~~~~~~l~~a~Sr~~~-----~k~yVq~~l~~~~~~v~~~-----l~~~~~iyvCGpa~~M~~-~V~~~L~~ 679 (710)
+||.+++ ....++++.+.+++.. ..++|+..+.+.. +... ...+..+|+||| ++|++ .+.+.|.+
T Consensus 214 ~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~--~~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~~L~~ 289 (300)
T PTZ00319 214 KELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAH--LPVPDPQNSGIKKVMALMCGP-PPMLQMAVKPNLEK 289 (300)
T ss_pred HHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhh--cCCccccccccCCeEEEEECC-HHHHHHHHHHHHHH
Confidence 9999865 4455678888887432 3466665443321 1100 013468999999 89998 56777765
Q ss_pred H
Q 005185 680 I 680 (710)
Q Consensus 680 i 680 (710)
.
T Consensus 290 ~ 290 (300)
T PTZ00319 290 I 290 (300)
T ss_pred c
Confidence 4
No 69
>PRK06756 flavodoxin; Provisional
Probab=99.83 E-value=8.1e-20 Score=174.96 Aligned_cols=137 Identities=22% Similarity=0.289 Sum_probs=114.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
|++|+|+|+|+|||||.+|+.|++++.+.+ ..++++|+.+... ..++.+++.+||++||||+|.+|+++..|+
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g--~~v~~~~~~~~~~-----~~~~~~~d~vi~gspt~~~g~~p~~~~~fl 73 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETE--NEIEVIDIMDSPE-----ASILEQYDGIILGAYTWGDGDLPDDFLDFY 73 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcC--CeEEEeehhccCC-----HHHHhcCCeEEEEeCCCCCCCCcHHHHHHH
Confidence 478999999999999999999999998765 4567888766432 245788999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHH
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 253 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~ 253 (710)
+.+... .++++++++||+|++.|.|||.+.+.+.+.|.++|++.+.+....+- ...++++++|.
T Consensus 74 ~~l~~~-----~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~-~p~~~d~~~~~ 137 (148)
T PRK06756 74 DAMDSI-----DLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVEL-TPEDEDVEKCL 137 (148)
T ss_pred HHHhcC-----CCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEec-CCCHHHHHHHH
Confidence 988643 48899999999999999999999999999999999999887554432 23366665544
No 70
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.83 E-value=4.4e-20 Score=186.80 Aligned_cols=170 Identities=21% Similarity=0.293 Sum_probs=122.8
Q ss_pred CCChHHHHHHhcCCCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhcc-CCCCCCCCCceEEEEEecC
Q 005185 476 KPPLGVFFAAIVPRLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNS-LPMEKSNDCSWAPIFVRQS 550 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l-~~g~~~~~~~~i~v~v~~g 550 (710)
...+|||+.+.+|....|+|||+|.| .+.++|+.+ + ..+.+|.||.+. .+|+ .+.|.+|.|
T Consensus 25 ~~~pGQ~~~l~~~~~~~r~ySi~s~~~~~~~l~~~v~~~----~----~g~~~s~~l~~~~~~Gd------~v~i~gP~g 90 (211)
T cd06185 25 AFEPGAHIDVHLPNGLVRQYSLCGDPADRDRYRIAVLRE----P----ASRGGSRYMHELLRVGD------ELEVSAPRN 90 (211)
T ss_pred CCCCCceEEEEcCCCCceeeeccCCCCCCCEEEEEEEec----c----CCCchHHHHHhcCCCCC------EEEEcCCcc
Confidence 45679999766566678999999998 234433321 1 123479999864 4454 678888889
Q ss_pred CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005185 551 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 630 (710)
Q Consensus 551 ~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 630 (710)
.|.++.+ .+|+||||+||||||+++++++..... .+++||||+|+.+ |.+|.+||+++. .. .+.+.++
T Consensus 91 ~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~~------~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~~~ 158 (211)
T cd06185 91 LFPLDEA-ARRHLLIAGGIGITPILSMARALAARG------ADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLHFD 158 (211)
T ss_pred CCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhCC------CCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEEEC
Confidence 9988643 578999999999999999999876521 5799999999997 899999999987 22 3445556
Q ss_pred cCCCCcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 631 REGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 631 r~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
++. ...++++.+.+ +..+..+|+||| +.|++++++.|.+..
T Consensus 159 ~~~-~~~~~~~~~~~--------~~~~~~vyicGp-~~m~~~~~~~l~~~g 199 (211)
T cd06185 159 DEG-GRLDLAALLAA--------PPAGTHVYVCGP-EGMMDAVRAAAAALG 199 (211)
T ss_pred CCC-CccCHHHHhcc--------CCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 543 23333333221 224679999999 899999999997653
No 71
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.82 E-value=1.3e-19 Score=177.24 Aligned_cols=140 Identities=28% Similarity=0.451 Sum_probs=115.2
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHH
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~ 185 (710)
+|.|+|+|+|||||++|+.|++.+.. ..++++|+.+.+. .++.+++.+||++||||.|++|+++..|++.
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~----~~~~i~~~~~~~~------~~l~~~d~ii~gspty~~g~~p~~~~~fl~~ 70 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE----DDVDVFNIAKASK------EDLNAYDKLILGTPTWGVGELQEDWEDFLPT 70 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEcccCCH------hHHhhCCEEEEEecCCCCCcCcHHHHHHHHH
Confidence 48999999999999999999999863 2367888877653 3578899999999999999999999999998
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc----------------------cccCC
Q 005185 186 FTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV----------------------GLGDD 241 (710)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~l~~~----------------------g~gD~ 241 (710)
|... .+++++++|||+||+. | ++||.+.+.+++.|++.|++.+... .++.+
T Consensus 71 l~~~-----~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~ 145 (167)
T TIGR01752 71 LEEL-----DFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDED 145 (167)
T ss_pred hhcC-----CCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeCCCEEEEEEecCC
Confidence 8643 4789999999999984 7 7999999999999999999977653 11223
Q ss_pred CC--CchhhHHHHHHHHHHHH
Q 005185 242 DQ--CIEDDFSAWRELVWPEL 260 (710)
Q Consensus 242 ~~--~~e~~f~~W~~~l~~~L 260 (710)
++ -.++++..|.++|.+++
T Consensus 146 ~~~~~~~~r~~~w~~~~~~~~ 166 (167)
T TIGR01752 146 NQPDLTEERIEKWVEQIKPEF 166 (167)
T ss_pred CchhhhHHHHHHHHHHHHHhh
Confidence 22 25778899998887654
No 72
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.82 E-value=8.5e-20 Score=173.23 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=103.1
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeE-EecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFK-VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
|+++|+|+|+|||||++|+.|++.+...+ ..++ +.++.++... ..++.+++.+||++||||.|.+|+++..|+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~----~~~~~~~d~iilgs~t~~~g~~p~~~~~fl 74 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDG--HEVDILHRIGTLADA----PLDPENYDLVFLGTWTWERGRTPDEMKDFI 74 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCC--eeEEecccccccccC----cCChhhCCEEEEEcCeeCCCcCCHHHHHHH
Confidence 57999999999999999999999998765 3344 4555543211 123567899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHH
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELV 256 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l 256 (710)
+++.. ++++|+|||+||+.| ++||.++++++++|++++...-+....+ +....+.+.+|.+++
T Consensus 75 ~~l~~--------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~~~~~i~~~~~--~~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 75 AELGY--------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSHPVLKIEQMPH--GEQDGRAIYDWLEGV 139 (140)
T ss_pred HHhcc--------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcCCceeEecCCc--ccccHHHHHHHHHHh
Confidence 99853 578999999999999 7999999999999977621111111111 122356688998875
No 73
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.82 E-value=8.8e-20 Score=189.90 Aligned_cols=174 Identities=22% Similarity=0.318 Sum_probs=138.6
Q ss_pred CCChHHHHHHhcCCCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCC
Q 005185 476 KPPLGVFFAAIVPRLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 551 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~ 551 (710)
...+|||+.+.+|....|||||+|.| .+.+.+.+. ..|.+|.+++.+.+|+ .+.+.+|.|+
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~~g~~~l~i~~~---------~~G~~T~~i~~~k~gd------~i~v~GP~G~ 99 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDDKGELELHIRVY---------EVGKVTKYIFGLKEGD------KIRVRGPLGN 99 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCcCCcEEEEEEEE---------eCChHHHHHhhccCCC------EEEEEcCCCC
Confidence 46789999888888899999999999 234444332 4699999999998876 4788889898
Q ss_pred CcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEec
Q 005185 552 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 631 (710)
Q Consensus 552 F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr 631 (710)
+.+..+..+|+++||||||+||+++++++....+ ...+++++||.|+++ |.++.+||+++... +++.+.+
T Consensus 100 ~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~----~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~- 169 (252)
T COG0543 100 GFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG----DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD- 169 (252)
T ss_pred CccccccCCcEEEEecccCHhHHHHHHHHHHhcC----CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC-
Confidence 7777666788999999999999999999988643 236899999999998 99999999999875 4555555
Q ss_pred CCC--Ccccc-cchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 632 EGP--TKEYV-QHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 632 ~~~--~k~yV-q~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
+++ .+++| ++.+.+... .+...+|+||| ++|++++.+.+.+..
T Consensus 170 ~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~g 215 (252)
T COG0543 170 DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEYG 215 (252)
T ss_pred CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 433 57888 666555311 14688999999 999999999887654
No 74
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.81 E-value=9.1e-20 Score=183.35 Aligned_cols=182 Identities=19% Similarity=0.336 Sum_probs=142.6
Q ss_pred cccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCCCcCCCCCCCCeEEEe
Q 005185 491 QPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 566 (710)
Q Consensus 491 ~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~lp~~~~~piImIa 566 (710)
.-|.||+||-| .|.+.|++..-+-.....+.|.||+|+.++++|+ ++.|++|.|.|... +.++|+|+|+
T Consensus 210 ~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGD------KvtisGPfGEfFaK-dtdaemvFig 282 (410)
T COG2871 210 IIRAYSMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGD------KVTISGPFGEFFAK-DTDAEMVFIG 282 (410)
T ss_pred HHHHhhhhcChhhcCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCC------eEEEeccchhhhhc-cCCCceEEEe
Confidence 35999999999 3444444432222334678899999999999987 58899999998764 5678999999
Q ss_pred cCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCc------cccc
Q 005185 567 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTK------EYVQ 640 (710)
Q Consensus 567 ~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k------~yVq 640 (710)
||.|.||+||-+-+.+.+..+. +++.+.||+|+.+ +.+|++|+++++++.++|+.++++|.+.++. +++.
T Consensus 283 GGAGmapmRSHIfDqL~rlhSk---Rkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFih 358 (410)
T COG2871 283 GGAGMAPMRSHIFDQLKRLHSK---RKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFIH 358 (410)
T ss_pred cCcCcCchHHHHHHHHHhhccc---ceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHHH
Confidence 9999999999998887765442 7899999999998 9999999999999999999999999876532 3444
Q ss_pred chhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCC
Q 005185 641 HKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGS 686 (710)
Q Consensus 641 ~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~ 686 (710)
..+.+. .+.++- +++..+|+||| +-|-.+|.+.|.+++.+..+
T Consensus 359 nv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~en 402 (410)
T COG2871 359 NVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVEREN 402 (410)
T ss_pred HHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCccccc
Confidence 444432 122221 46789999999 88999999999888766543
No 75
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.81 E-value=2.7e-19 Score=169.00 Aligned_cols=135 Identities=23% Similarity=0.300 Sum_probs=111.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCC-chHHHHHHH
Q 005185 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARFYKW 185 (710)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~p-dna~~F~~~ 185 (710)
|+|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+.+. .++.+++.+||++|||+.|.+| +++..|+++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g--~~v~~~~~~~~~~------~~l~~~d~iilgspty~~g~~p~~~~~~f~~~ 72 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAG--AEVDLLEVADADA------EDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEE 72 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcC--CeEEEEEcccCCH------HHHhcCCEEEEEcCCCCCCCCCcchHHHHHHH
Confidence 589999999999999999999998765 4578888887764 3577899999999999999999 999999999
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHH
Q 005185 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWREL 255 (710)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~ 255 (710)
|... .+++++++|||+|++.|+ ||.+++.++++|+++|++++.+....+... ...+...+|.++
T Consensus 73 l~~~-----~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~ 138 (140)
T TIGR01753 73 LEDI-----DLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKD 138 (140)
T ss_pred hhhC-----CCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHH
Confidence 9753 478999999999999998 999999999999999999998754433221 122334555544
No 76
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.81 E-value=9e-20 Score=189.82 Aligned_cols=165 Identities=23% Similarity=0.308 Sum_probs=124.1
Q ss_pred CCChHHHHHHhcCCC---cccccccCCCC--ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecC
Q 005185 476 KPPLGVFFAAIVPRL---QPRYYSISSSP--RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQS 550 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l---~pR~YSIsSsp--~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g 550 (710)
...+|||+.+.+|.. .+|+|||+|+| .++++|+ ..|.+|+||.++.+|+ .+.|.+|.|
T Consensus 31 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~l~l~Vk-----------~~G~~t~~l~~l~~G~------~v~i~gP~G 93 (250)
T PRK00054 31 DMKPGQFVMVWVPGVEPLLERPISISDIDKNEITILYR-----------KVGEGTKKLSKLKEGD------ELDIRGPLG 93 (250)
T ss_pred CCCCCcEEEEEeCCCCCcCceeeEEeeeCCCEEEEEEE-----------EcChHHHHHhcCCCCC------EEEEEcccC
Confidence 346789986554543 58999999998 4444442 1388899999887765 578888887
Q ss_pred C-CcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 551 N-FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 551 ~-F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
+ |.++. ..+|+||||+||||||+++++++....+ .+++|+|++|+.+ |++|.+||+++.+ +++.
T Consensus 94 ~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~~------~~~~- 158 (250)
T PRK00054 94 NGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG------VEVTTVLGARTKD-EVIFEEEFAKVGD------VYVT- 158 (250)
T ss_pred CCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC------CcEEEEEEcCCHH-HhhhHHHHHhcCC------EEEE-
Confidence 6 88764 4579999999999999999999987532 4689999999997 9999999998431 2222
Q ss_pred ecCCC--CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 630 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 630 Sr~~~--~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
+++++ .++||++.+.+.. .....||+||| +.|++++++.|.+.
T Consensus 159 ~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~~ 203 (250)
T PRK00054 159 TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKEK 203 (250)
T ss_pred ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 23332 4578887765431 23468999999 99999999998774
No 77
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.80 E-value=1.3e-19 Score=185.14 Aligned_cols=144 Identities=19% Similarity=0.286 Sum_probs=104.8
Q ss_pred ccccccCCCCc-----eEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCCCcCCC---CCCCCeE
Q 005185 492 PRYYSISSSPR-----IHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPA---DAKVPII 563 (710)
Q Consensus 492 pR~YSIsSsp~-----i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~lp~---~~~~piI 563 (710)
.|+|||||+|. .++.+.+. ..|.+|+||.+..... ...+..+.|.++.|.|.++. +..+++|
T Consensus 60 ~R~ySias~p~~~~~~~~l~l~vk---------~~G~~T~~L~~~~~~~-~~~G~~v~v~gP~G~f~~~~~~~~~~~~il 129 (220)
T cd06197 60 VRTFTVSSAPPHDPATDEFEITVR---------KKGPVTGFLFQVARRL-REQGLEVPVLGVGGEFTLSLPGEGAERKMV 129 (220)
T ss_pred eeeEEeecCCccCCCCCEEEEEEE---------eCCCCCHHHHHhhhcc-cCCCceEEEEecCCcccCCcccccCCceEE
Confidence 59999999982 34444332 2389999999875420 00113688889999999875 3457899
Q ss_pred EEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchh
Q 005185 564 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKM 643 (710)
Q Consensus 564 mIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l 643 (710)
|||||||||||++++++...... ...+++|+||+|+.+ |.+|.+||.++... ...+.. ++
T Consensus 130 lIagG~GItP~~sil~~l~~~~~---~~~~v~l~~~~r~~~-~~~~~~el~~~~~~--~~~~~~-~~------------- 189 (220)
T cd06197 130 WIAGGVGITPFLAMLRAILSSRN---TTWDITLLWSLREDD-LPLVMDTLVRFPGL--PVSTTL-FI------------- 189 (220)
T ss_pred EEecccchhhHHHHHHHHHhccc---CCCcEEEEEEecchh-hHHHHHHHHhccCC--ceEEEE-EE-------------
Confidence 99999999999999998875321 126899999999997 99999999876531 111111 11
Q ss_pred hcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005185 644 MEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 679 (710)
Q Consensus 644 ~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~ 679 (710)
.+.||+||| ++|+++|.+.+.+
T Consensus 190 -------------~~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 190 -------------TSEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred -------------eccEEEECc-HHHHHHHHHHhhh
Confidence 116999999 8999999988775
No 78
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.80 E-value=2.1e-19 Score=186.20 Aligned_cols=168 Identities=15% Similarity=0.110 Sum_probs=121.3
Q ss_pred CChHHHHHHhcC---CCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEec
Q 005185 477 PPLGVFFAAIVP---RLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 477 ~p~~~~l~~i~p---~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~ 549 (710)
..+|||+.+.+| ....|+|||+|.| .++++|+ ..|..|+||.++.+|+ .+.|.+|.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~-----------~~G~~t~~l~~~~~G~------~l~i~gP~ 87 (243)
T cd06192 25 FRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVE-----------IRGPKTKLIAELKPGE------KLDVMGPL 87 (243)
T ss_pred CCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEE-----------EcCchHHHHHhCCCCC------EEEEEccC
Confidence 456888865543 4467999999997 3444332 1388899999887765 57888888
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|+|.+..+..++++|||+|||||||++++++..... .+++||||+|+.+ |.+|.+||+++. . ..+..
T Consensus 88 G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~------~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~~~ 154 (243)
T cd06192 88 GNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG------NKVTVLAGAKKAK-EEFLDEYFELPA----D--VEIWT 154 (243)
T ss_pred CCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC------CeEEEEEecCcHH-HHHHHHHHHhhc----C--eEEEE
Confidence 887655444678999999999999999999987531 5799999999997 999999998772 1 22333
Q ss_pred ecCCC--CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 630 SREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 630 Sr~~~--~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
+++++ ..+++++... ... ...+..+|+||| ++|++++++.|.+.+
T Consensus 155 ~~~~~~~~~g~v~~~~~-----~~~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 155 TDDGELGLEGKVTDSDK-----PIP-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred ecCCCCccceeechhhh-----hhh-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 44432 3345544311 111 123468999999 899999999998764
No 79
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.80 E-value=2.6e-19 Score=184.45 Aligned_cols=164 Identities=23% Similarity=0.314 Sum_probs=121.4
Q ss_pred CCChHHHHHHhcCCCcccccccCCCC-ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCC-Cc
Q 005185 476 KPPLGVFFAAIVPRLQPRYYSISSSP-RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN-FK 553 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l~pR~YSIsSsp-~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~-F~ 553 (710)
..-+|||+.+.+|....|+|||+|+| .+.++|+ ..|.+|+||+++.+|+ .+.|..|.|+ |.
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~~~l~~~v~-----------~~G~~s~~L~~l~~Gd------~v~i~gP~G~~f~ 85 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYIDGPNSITVK-----------KVGEATSALHDLKEGD------KLGIRGPYGNGFE 85 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCCCeEEEEEE-----------ecChHHHHHHhcCCCC------EEEEECcCCCCcc
Confidence 44579998765565567999999998 3443332 1388999999977765 5778888887 87
Q ss_pred CCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCC
Q 005185 554 LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREG 633 (710)
Q Consensus 554 lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~ 633 (710)
++ .+|+||||+|||||||++++++.... ++++||||+|+.+ |++|.+||++. . ++.+.. .++
T Consensus 86 ~~---~~~~vliAgGtGitP~~sil~~~~~~-------~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~-~~~ 147 (233)
T cd06220 86 LV---GGKVLLIGGGIGIAPLAPLAERLKKA-------ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT-DDG 147 (233)
T ss_pred CC---CCeEEEEecCcChHHHHHHHHHHHhc-------CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE-eCC
Confidence 65 57899999999999999999987652 5799999999997 99999999972 1 233332 222
Q ss_pred C--CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 634 P--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 634 ~--~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
+ ..+++++.+.+.. ......||+||| ++|++++.+.|.+..
T Consensus 148 ~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~g 190 (233)
T cd06220 148 SYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDERG 190 (233)
T ss_pred CCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 1 3467766544321 123468999999 899999999997643
No 80
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.80 E-value=1.5e-19 Score=191.32 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=121.1
Q ss_pred CChHHHHHHhcCC-CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceE-EEEEecC
Q 005185 477 PPLGVFFAAIVPR-LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQS 550 (710)
Q Consensus 477 ~p~~~~l~~i~p~-l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i-~v~v~~g 550 (710)
.-+|||+.+-++. ..+|+|||+|+| .+.++|+ ..|..|++|+++.+|+ .+ .|.+|.|
T Consensus 28 ~~pGQfv~l~~~~~~~~rpySias~~~~~~~i~l~vk-----------~~G~~T~~L~~l~~Gd------~v~~i~GP~G 90 (281)
T PRK06222 28 AKPGQFVIVRIDEKGERIPLTIADYDREKGTITIVFQ-----------AVGKSTRKLAELKEGD------SILDVVGPLG 90 (281)
T ss_pred CCCCeEEEEEeCCCCCceeeEeeEEcCCCCEEEEEEE-----------eCCcHHHHHhcCCCCC------EEeeEEcCCC
Confidence 4579998654443 346899999976 2444432 2488999999887765 56 6888988
Q ss_pred CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005185 551 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 630 (710)
Q Consensus 551 ~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 630 (710)
+|.... ..+++||||+|+||||+++++++....+ .+++||||+|+.+ |.+|.+||+++..+ +++ .+
T Consensus 91 ~~~~~~-~~~~~llIaGGiGiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v-~~ 156 (281)
T PRK06222 91 KPSEIE-KFGTVVCVGGGVGIAPVYPIAKALKEAG------NKVITIIGARNKD-LLILEDEMKAVSDE-----LYV-TT 156 (281)
T ss_pred CCcccC-CCCeEEEEeCcCcHHHHHHHHHHHHHCC------CeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-Ec
Confidence 876543 3578999999999999999999876432 4799999999997 99999999987652 222 23
Q ss_pred cCCC--CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 631 REGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 631 r~~~--~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
.+++ .+++|++.+.+.. ........||+||| ++|++++.+.+.+.
T Consensus 157 ~d~~~g~~G~v~~~l~~~~----~~~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (281)
T PRK06222 157 DDGSYGRKGFVTDVLKELL----ESGKKVDRVVAIGP-VIMMKFVAELTKPY 203 (281)
T ss_pred CCCCcCcccchHHHHHHHh----hcCCCCcEEEEECC-HHHHHHHHHHHHhc
Confidence 3332 4567766554321 11111457999999 99999999988664
No 81
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=6.9e-19 Score=183.60 Aligned_cols=162 Identities=19% Similarity=0.336 Sum_probs=124.4
Q ss_pred CCcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCCCcCCCCCCCCeEEE
Q 005185 489 RLQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 565 (710)
Q Consensus 489 ~l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~lp~~~~~piImI 565 (710)
++.|+|||||++. +++++|+ .-|..|.-|++..+.|+ ++.|.+|.|.|.......+ .|+|
T Consensus 259 ~~~~HPFTIa~s~~~sel~FsIK-----------~LGD~Tk~l~dnLk~G~-----k~~vdGPYG~F~~~~g~~~-QVWI 321 (438)
T COG4097 259 RMRPHPFTIACSHEGSELRFSIK-----------ALGDFTKTLKDNLKVGT-----KLEVDGPYGKFDFERGLNT-QVWI 321 (438)
T ss_pred cCCCCCeeeeeCCCCceEEEEeh-----------hhhhhhHHHHHhccCCc-----eEEEecCcceeecccCCcc-cEEE
Confidence 4569999999998 4555543 35999999998444443 7889999999988654333 8999
Q ss_pred ecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhc
Q 005185 566 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 645 (710)
Q Consensus 566 a~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~ 645 (710)
|||+|||||+|+++.....+.+ .+++|||.||+.+ |-+|.+||+.++++.+.+.++.. |...++|+.....+
T Consensus 322 AGGIGITPFis~l~~l~~~~s~----~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHii---DSs~~g~l~~e~le 393 (438)
T COG4097 322 AGGIGITPFISMLFTLAERKSD----PPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHII---DSSKDGYLDQEDLE 393 (438)
T ss_pred ecCcCcchHHHHHHhhcccccC----CceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEEe---cCCCCCccCHHHhh
Confidence 9999999999999998874433 7899999999998 99999999999998888777763 44467777544333
Q ss_pred chhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 646 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 646 ~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
... .......||+||| ++|++++++.|++.
T Consensus 394 r~~----~~~~~~sv~fCGP-~~m~dsL~r~l~~~ 423 (438)
T COG4097 394 RYP----DRPRTRSVFFCGP-IKMMDSLRRDLKKQ 423 (438)
T ss_pred ccc----cccCcceEEEEcC-HHHHHHHHHHHHHc
Confidence 210 0122348999999 99999999999865
No 82
>PLN02252 nitrate reductase [NADPH]
Probab=99.79 E-value=4.5e-19 Score=211.51 Aligned_cols=190 Identities=15% Similarity=0.213 Sum_probs=133.9
Q ss_pred CChHHHHHHhcC---CCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEec
Q 005185 477 PPLGVFFAAIVP---RLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 477 ~p~~~~l~~i~p---~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~ 549 (710)
.++|||+.+.++ ....|+|||+|++ .+.++|+++...........|.+|+||.++.+|+ .+.|.+|.
T Consensus 665 l~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd------~V~V~GP~ 738 (888)
T PLN02252 665 LPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGD------TIDVKGPL 738 (888)
T ss_pred CCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCC------EEEEecCc
Confidence 467888754332 2347999999998 4666666552211111224699999999887766 57787787
Q ss_pred CCC--------cCCCC--CCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHc
Q 005185 550 SNF--------KLPAD--AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS 619 (710)
Q Consensus 550 g~F--------~lp~~--~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~ 619 (710)
|.| .++.. ..++++|||+|||||||++++++.+.... ...+++||||+|+.+ |++|++||++++++
T Consensus 739 G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~---d~t~i~Liyg~Rt~~-Dil~~eEL~~la~~ 814 (888)
T PLN02252 739 GHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPE---DKTEMSLVYANRTED-DILLREELDRWAAE 814 (888)
T ss_pred cceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccC---CCCcEEEEEEECCHH-HhhHHHHHHHHHHh
Confidence 765 34322 24789999999999999999999876422 126899999999997 99999999999987
Q ss_pred C-CCcEEEEEEecCC-C----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHH-HHHHHHHH
Q 005185 620 G-ALSQLIVAFSREG-P----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHTI 680 (710)
Q Consensus 620 ~-~~~~l~~a~Sr~~-~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~-V~~~L~~i 680 (710)
. ..+++++++|++. . .+++|+..+.+.. ......+..+|+||| ++|++. +...|.++
T Consensus 815 ~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~---l~~~~~~~~vyiCGP-p~Mi~~av~~~L~~~ 878 (888)
T PLN02252 815 HPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREH---LPEGGDETLALMCGP-PPMIEFACQPNLEKM 878 (888)
T ss_pred CCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHh---cccCCCCeEEEEeCC-HHHHHHHHHHHHHHc
Confidence 6 4668888889753 1 3466665443221 111124568999999 899984 77777654
No 83
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.78 E-value=4.6e-19 Score=184.33 Aligned_cols=170 Identities=15% Similarity=0.161 Sum_probs=120.5
Q ss_pred CCChHHHHHHhcC-CCcccccccCCCC--ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceE-EEEEecCC
Q 005185 476 KPPLGVFFAAIVP-RLQPRYYSISSSP--RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQSN 551 (710)
Q Consensus 476 ~~p~~~~l~~i~p-~l~pR~YSIsSsp--~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i-~v~v~~g~ 551 (710)
...+|||+.+.++ ....|+|||+|+| .-++.+.+. ..|..|.+|.++.+|+ .+ .+..|.|.
T Consensus 26 ~~~pGQf~~l~~~~~~~~~pySi~s~~~~~~~~~~~vk---------~~G~~t~~l~~l~~G~------~v~~i~gP~G~ 90 (248)
T cd06219 26 KAKPGQFVIVRADEKGERIPLTIADWDPEKGTITIVVQ---------VVGKSTRELATLEEGD------KIHDVVGPLGK 90 (248)
T ss_pred cCCCCcEEEEEcCCCCCccceEeEEEcCCCCEEEEEEE---------eCCchHHHHHhcCCCC------EeeeeecCCCC
Confidence 3457898865433 2356999999986 223333221 1378899998887765 46 57888888
Q ss_pred CcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEec
Q 005185 552 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 631 (710)
Q Consensus 552 F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr 631 (710)
|.+.. ..+|+||||+||||||+++++++....+ .+++||||+|+.+ |++|.+||+++.++ ++++ ++
T Consensus 91 ~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~-~~ 156 (248)
T cd06219 91 PSEIE-NYGTVVFVGGGVGIAPIYPIAKALKEAG------NRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT-TD 156 (248)
T ss_pred CeecC-CCCeEEEEeCcccHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE-eC
Confidence 76543 3578999999999999999999876532 5799999999997 99999999999643 2222 44
Q ss_pred CCC--CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005185 632 EGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 679 (710)
Q Consensus 632 ~~~--~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~ 679 (710)
+.+ ..+|+++.+.+.. .+ ......+|+||| ++|++++.+.|.+
T Consensus 157 ~~~~~~~g~v~~~l~~~~---~~-~~~~~~vyiCGP-~~m~~~~~~~l~~ 201 (248)
T cd06219 157 DGSYGEKGFVTDPLKELI---ES-GEKVDLVIAIGP-PIMMKAVSELTRP 201 (248)
T ss_pred CCCCCccccchHHHHHHH---hc-cCCccEEEEECC-HHHHHHHHHHHHH
Confidence 332 3467766554321 11 123457999999 9999999998865
No 84
>PRK05802 hypothetical protein; Provisional
Probab=99.77 E-value=3.9e-19 Score=191.05 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=116.9
Q ss_pred ChHHHHHHhcC---CCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEec-
Q 005185 478 PLGVFFAAIVP---RLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ- 549 (710)
Q Consensus 478 p~~~~l~~i~p---~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~- 549 (710)
-+|||+.+..| +...|||||+|+| .+.++++. .|..|++|.++.+|+ .+.|.+|.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~-----------~G~~T~~L~~l~~Gd------~l~v~GP~G 158 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEI-----------RGVKTKKIAKLNKGD------EILLRGPYW 158 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEe-----------cChhHHHHhcCCCCC------EEEEeCCCC
Confidence 47888865433 2345999999997 24444422 488999999888876 57788886
Q ss_pred -CCCcCC---CCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEE
Q 005185 550 -SNFKLP---ADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQL 625 (710)
Q Consensus 550 -g~F~lp---~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l 625 (710)
|.|.++ ....+++++||+|+||||+++++++....+ .+++||||+|+++ |++|.+||+++..+...+
T Consensus 159 nG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~------~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~-- 229 (320)
T PRK05802 159 NGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG------NKIIVIIDKGPFK-NNFIKEYLELYNIEIIEL-- 229 (320)
T ss_pred cCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC------CcEEEEEeCCCHH-HHHHHHHHHHhhCceEEE--
Confidence 447653 233568999999999999999999887543 4799999999997 999999999986542221
Q ss_pred EEEEecCCC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 626 IVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 626 ~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
.+..++. .+++|++.+.+. +...||+||| +.|+++|.+.|.++
T Consensus 230 --~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 230 --NLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred --EecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 1112321 123444433221 2357999999 99999999998764
No 85
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.77 E-value=8.6e-18 Score=161.56 Aligned_cols=143 Identities=24% Similarity=0.333 Sum_probs=114.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
|++++|+|+|+|||||.+|+.|+++|.+.+ ..+. ++......+ ..+..++.++|+++|||.|+.|+++.+|+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~--~~~~-~~~~~~~~~-----~~~~~~d~~~~g~~t~~~ge~~~~~~~f~ 72 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADG--FEVD-IDIRPGIKD-----DLLESYDELLLGTPTWGAGELPDDWYDFI 72 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCC--ceEE-EeecCCcch-----hhhccCCEEEEEeCCCCCCcCCccHHHHH
Confidence 689999999999999999999999998765 2232 222222211 12357899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHH-HHHHHHHHHHHHHHcC--Cccccccccc--CC--CCCchhhHHHHHHHH
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQG--AKRLVPVGLG--DD--DQCIEDDFSAWRELV 256 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lG--a~~l~~~g~g--D~--~~~~e~~f~~W~~~l 256 (710)
.-+.. ..+++++||+||+||+.|.. ||.+...+.+.|+..| +....+.... |. ....++....|.+++
T Consensus 73 ~~~~~-----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~ 147 (151)
T COG0716 73 EELEP-----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQI 147 (151)
T ss_pred HHhcc-----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHH
Confidence 99875 25899999999999999977 9999999999999999 5555554444 22 335788899999988
Q ss_pred HHH
Q 005185 257 WPE 259 (710)
Q Consensus 257 ~~~ 259 (710)
+..
T Consensus 148 ~~~ 150 (151)
T COG0716 148 LNE 150 (151)
T ss_pred Hhh
Confidence 753
No 86
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.76 E-value=8.1e-18 Score=174.90 Aligned_cols=179 Identities=16% Similarity=0.234 Sum_probs=134.0
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCce--EEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCC
Q 005185 477 PPLGVFFAAIVP---RLQPRYYSISSSPRI--HVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 551 (710)
Q Consensus 477 ~p~~~~l~~i~p---~l~pR~YSIsSsp~i--~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~ 551 (710)
.|.||.+...+| ..--|+||..|++.. ++-+.+..+ ..|.+|.||.++..|+ .+.+.+|.|+
T Consensus 82 lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y-------~~G~mS~~l~~LkiGd------~ve~rGP~G~ 148 (286)
T KOG0534|consen 82 LPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVY-------PKGKMSQHLDSLKIGD------TVEFRGPIGE 148 (286)
T ss_pred cccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEec-------cCCcccHHHhcCCCCC------EEEEecCccc
Confidence 455665544434 234799999999822 222222222 3599999999999976 5788888899
Q ss_pred CcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCC-CcEEEEEEe
Q 005185 552 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA-LSQLIVAFS 630 (710)
Q Consensus 552 F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~-~~~l~~a~S 630 (710)
|.+++...+.+.|||||||||||.+++|+.+...++ ..+++|+|++++++ |.++++||+.++++.+ .+.++.+.+
T Consensus 149 ~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d---~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~y~v~ 224 (286)
T KOG0534|consen 149 FKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPED---TTKISLLYANKTED-DILLREELEELASKYPERFKVWYVVD 224 (286)
T ss_pred eEecCCCcceEEEEecccchhhHHHHHHHHhcCCCC---CcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEEEEEc
Confidence 988766678899999999999999999999875432 46899999999998 9999999999999888 788888888
Q ss_pred cCCC----CcccccchhhcchhHHhhcc---cC-CcEEEEecCchhhHHH-HHHHHHH
Q 005185 631 REGP----TKEYVQHKMMEKSSDIWNML---SE-GAYLYVCGDAKSMARD-VHRTLHT 679 (710)
Q Consensus 631 r~~~----~k~yVq~~l~~~~~~v~~~l---~~-~~~iyvCGpa~~M~~~-V~~~L~~ 679 (710)
++.. .++||...+.. ..+ .. ...++|||| ++|... +...|.+
T Consensus 225 ~~~~~w~~~~g~It~~~i~------~~l~~~~~~~~~~liCGP-p~m~~~~~~~~le~ 275 (286)
T KOG0534|consen 225 QPPEIWDGSVGFITKDLIK------EHLPPPKEGETLVLICGP-PPMINGAAQGNLEK 275 (286)
T ss_pred CCcccccCccCccCHHHHH------hhCCCCCCCCeEEEEECC-HHHHhHHHHHHHHh
Confidence 8763 45666554432 222 22 478999999 999974 4444443
No 87
>PRK09267 flavodoxin FldA; Validated
Probab=99.76 E-value=1.2e-17 Score=163.49 Aligned_cols=142 Identities=27% Similarity=0.466 Sum_probs=114.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
|++|+|+|+|+||||+++|+.|++.+.. ..+.++|+++... .++..++.+||++|||+.|.+|+.+..|+
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~----~~~~~~~~~~~~~------~~l~~~d~vi~g~pt~~~G~~~~~~~~fl 70 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK----DVADVVDIAKASK------EDFEAYDLLILGIPTWGYGELQCDWDDFL 70 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEhhhCCH------hhHhhCCEEEEEecCcCCCCCCHHHHHHH
Confidence 4689999999999999999999999863 2367888877653 35778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc---ccc-----------------CC
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV---GLG-----------------DD 241 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~l~~~---g~g-----------------D~ 241 (710)
+.+... .|+++++++||+||+. | ++||.+.+.+++.|.+.|++.+... |.. |.
T Consensus 71 ~~~~~~-----~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~ 145 (169)
T PRK09267 71 PELEEI-----DFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDE 145 (169)
T ss_pred HHHhcC-----CCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecC
Confidence 887543 4889999999999985 8 8999999999999999998865431 111 11
Q ss_pred CC---CchhhHHHHHHHHHHHH
Q 005185 242 DQ---CIEDDFSAWRELVWPEL 260 (710)
Q Consensus 242 ~~---~~e~~f~~W~~~l~~~L 260 (710)
+. -.++++++|.++|.+++
T Consensus 146 ~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 146 DNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CCchhhhHHHHHHHHHHHHHHh
Confidence 11 13678899999987764
No 88
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.75 E-value=2.8e-18 Score=212.52 Aligned_cols=183 Identities=17% Similarity=0.272 Sum_probs=132.2
Q ss_pred CChHHHHHHhcC---CCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEec
Q 005185 477 PPLGVFFAAIVP---RLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 477 ~p~~~~l~~i~p---~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~ 549 (710)
..+|||+.+..+ ....|+|||+|.| .+.++| + ...|.+|+||+++.+|+ .+.|..+.
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~V----r------~~~G~~S~~L~~l~~Gd------~v~v~gp~ 1011 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILA----R------GDKGTLKEWISALRPGD------SVEMKACG 1011 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEE----E------cCCChhHHHHhhCCCCC------EEEEeCCc
Confidence 568999975432 1235999999999 233333 1 13689999999888876 46666543
Q ss_pred C----------CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHc
Q 005185 550 S----------NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQS 619 (710)
Q Consensus 550 g----------~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~ 619 (710)
| .|.++....+|+||||+|||||||++|+++...... .....+++||||+|+.+ |++|++||++|+++
T Consensus 1012 G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~-~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~~~ 1089 (1167)
T PTZ00306 1012 GLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY-VDSIESIRLIYAAEDVS-ELTYRELLESYRKE 1089 (1167)
T ss_pred CccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc-cCCCceEEEEEEeCCHH-HhhHHHHHHHHHHH
Confidence 3 466665566899999999999999999998875321 01225899999999997 99999999999987
Q ss_pred CC-CcEEEEEEecCCC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 620 GA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 620 ~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
.+ .+++++++|++++ ..++|++.+.+. .......+..+|+||| ++|++++.+.|.+..
T Consensus 1090 ~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~---~l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~G 1152 (1167)
T PTZ00306 1090 NPGKFKCHFVLNNPPEGWTDGVGFVDRALLQS---ALQPPSKDLLVAICGP-PVMQRAVKADLLALG 1152 (1167)
T ss_pred CCCCEEEEEEECCCCcccCCCCCCCCHHHHHH---hcCCCCCCeEEEEeCC-HHHHHHHHHHHHHcC
Confidence 65 4788899997543 246666543322 1111124578999999 999999999987653
No 89
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.72 E-value=1.2e-17 Score=150.76 Aligned_cols=104 Identities=25% Similarity=0.444 Sum_probs=81.2
Q ss_pred EEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCC-cEEEEEEecCCC----Cccc
Q 005185 564 MIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL-SQLIVAFSREGP----TKEY 638 (710)
Q Consensus 564 mIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~-~~l~~a~Sr~~~----~k~y 638 (710)
|||+|||||||+||++++.... ..++++||||+|+.+ |++|++||+++.+.... ++++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~----~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN----DNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT----CTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHhC----CCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 7999999999999999998763 237899999999998 99999999999987765 344433 43332 3689
Q ss_pred ccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHH
Q 005185 639 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHR 675 (710)
Q Consensus 639 Vq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~ 675 (710)
|++.+.+.... ......+..||+||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 99988654332 122256889999999 999999874
No 90
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.69 E-value=6.6e-17 Score=193.16 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=123.8
Q ss_pred CChHHHHHHhcCCC-cccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceE-EEEEecC
Q 005185 477 PPLGVFFAAIVPRL-QPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQS 550 (710)
Q Consensus 477 ~p~~~~l~~i~p~l-~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i-~v~v~~g 550 (710)
.-+|||+.+.++.. .+|+|||+|.| .+.++|+. .|.+|++|+++.+|+ .+ .|.+|.|
T Consensus 28 ~~pGQFv~l~~~~~~~~rp~Si~~~~~~~g~i~~~vk~-----------vG~~T~~L~~l~~Gd------~v~~v~GP~G 90 (752)
T PRK12778 28 RKPGQFVIVRVGEKGERIPLTIADADPEKGTITLVIQE-----------VGLSTTKLCELNEGD------YITDVVGPLG 90 (752)
T ss_pred CCCCeeEEEEeCCCCCeeEEEeeeeCCCCCEEEEEEEE-----------cCchHHHHhcCCCCC------EeCeEeCCCC
Confidence 45799986544432 35899999987 34544432 388999999988876 56 6888999
Q ss_pred CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005185 551 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 630 (710)
Q Consensus 551 ~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 630 (710)
+|..... .++++|||||+|||||++++++....+ .+++||||.|+.+ |++|.+||.++..+ +.++ +
T Consensus 91 ~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~~~------~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~-t 156 (752)
T PRK12778 91 NPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKAAG------NRVITILGGRSKE-LIILEDEMRESSDE-----VIIM-T 156 (752)
T ss_pred CCccCCC-CCeEEEEECCEeHHHHHHHHHHHHHCC------CeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE-E
Confidence 9876533 478999999999999999999887642 4799999999997 99999999988653 2222 3
Q ss_pred cCCC--CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 631 REGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 631 r~~~--~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
.+++ .+++|++.+.+.. ........||+||| ++|+++|.+.+.+.
T Consensus 157 ~dg~~g~~G~v~~~l~~~~----~~~~~~~~vy~CGP-~~M~~~v~~~l~~~ 203 (752)
T PRK12778 157 DDGSYGRKGLVTDGLEEVI----KRETKVDKVFAIGP-AIMMKFVCLLTKKY 203 (752)
T ss_pred CCCCCCCcccHHHHHHHHh----hcCCCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 4443 4678877654421 11112357999999 99999999988653
No 91
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.67 E-value=8e-17 Score=166.16 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=103.5
Q ss_pred cccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCCCcCCCCCCCCeEEEe
Q 005185 491 QPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 566 (710)
Q Consensus 491 ~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~lp~~~~~piImIa 566 (710)
..|+|||+|.+ ++++.|.++ ...|.+|+||.++.+|+ .+.+..+.|.|.++. ..++++|||
T Consensus 63 ~~R~YSi~~~~~~~~~l~~~v~~~--------~~~G~~s~~l~~l~~Gd------~v~v~gP~G~~~~~~-~~~~~vlia 127 (235)
T cd06193 63 VMRTYTVRRFDPEAGELDIDFVLH--------GDEGPASRWAASAQPGD------TLGIAGPGGSFLPPP-DADWYLLAG 127 (235)
T ss_pred cCcccceeEEcCCCCEEEEEEEeC--------CCCCchHHHHhhCCCCC------EEEEECCCCCCCCCC-CcceEEEEe
Confidence 46999999986 344444321 11389999999887766 678888999998764 457899999
Q ss_pred cCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhcc
Q 005185 567 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEK 646 (710)
Q Consensus 567 ~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~ 646 (710)
+||||||+++++++.... .++++|||+|+.+ |.++.+++. .++++.+.++++. .......+..
T Consensus 128 ~GtGi~p~~~il~~~~~~-------~~~~~~~~~~~~~-d~~~l~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~- 190 (235)
T cd06193 128 DETALPAIAAILEELPAD-------ARGTALIEVPDAA-DEQPLPAPA-------GVEVTWLHRGGAE-AGELALLAVR- 190 (235)
T ss_pred ccchHHHHHHHHHhCCCC-------CeEEEEEEECCHH-HccccCCCC-------CcEEEEEeCCCCC-cchhHHHHHh-
Confidence 999999999999976431 4799999999985 554433321 2355555443332 1111100000
Q ss_pred hhHHhhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005185 647 SSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 679 (710)
Q Consensus 647 ~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~ 679 (710)
. ......+..+|+||| ++|++++++.|.+
T Consensus 191 --~-~~~~~~~~~vyicGp-~~mv~~v~~~l~~ 219 (235)
T cd06193 191 --A-LAPPAGDGYVWIAGE-AGAVRALRRHLRE 219 (235)
T ss_pred --c-ccCCCCCeEEEEEcc-HHHHHHHHHHHHH
Confidence 0 011124578999999 8999999998865
No 92
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.64 E-value=8.6e-16 Score=185.77 Aligned_cols=178 Identities=14% Similarity=0.112 Sum_probs=121.4
Q ss_pred CChHHHHHHhcC-CCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceE-EEEEecC
Q 005185 477 PPLGVFFAAIVP-RLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWA-PIFVRQS 550 (710)
Q Consensus 477 ~p~~~~l~~i~p-~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i-~v~v~~g 550 (710)
..+|||+.+..+ ....|+|||+|.| .+.++|+. .|..|.+|.++.+|+ .+ .|.+|.|
T Consensus 677 ~~PGQFv~L~~~~~ge~rP~SIas~~~~~g~i~l~Vk~-----------vG~~T~~L~~lk~Gd------~l~~I~GPlG 739 (944)
T PRK12779 677 AQAGQFVRVLPWEKGELIPLTLADWDAEKGTIDLVVQG-----------MGTSSLEINRMAIGD------AFSGIAGPLG 739 (944)
T ss_pred CCCCceEEEEeCCCCCEEeEEccCCCCCCCEEEEEEEe-----------eccHHHHHhcCCCcC------EEeeeecCCC
Confidence 458999965432 2335999999976 34444321 378899999888876 46 3888888
Q ss_pred CCc-CCC-CCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHH---HHHHHcCC-CcE
Q 005185 551 NFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDEL---NNFVQSGA-LSQ 624 (710)
Q Consensus 551 ~F~-lp~-~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL---~~~~~~~~-~~~ 624 (710)
+|. ++. ...++++|||||+||||+++++++....+ .+++||||+|+++ |++|.+++ ++|++... .++
T Consensus 740 ~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g------~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~~~ 812 (944)
T PRK12779 740 RASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG------NHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQLD 812 (944)
T ss_pred CCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC------CCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCCeE
Confidence 864 433 22468999999999999999999876532 4799999999996 88887664 55665443 334
Q ss_pred EEEEEecCCC--CcccccchhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 625 LIVAFSREGP--TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 625 l~~a~Sr~~~--~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
++++ +.+++ .+++|++.+.+........- .+...||+||| ++|+++|.+.|.+.
T Consensus 813 v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~ 869 (944)
T PRK12779 813 VIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKPY 869 (944)
T ss_pred EEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 4443 44432 46788776544211100000 01357999999 99999999988654
No 93
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.63 E-value=8e-16 Score=155.56 Aligned_cols=166 Identities=17% Similarity=0.219 Sum_probs=111.2
Q ss_pred CCChHHHHHHhcCCC----cccccccCCCCc---eEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEe
Q 005185 476 KPPLGVFFAAIVPRL----QPRYYSISSSPR---IHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 548 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l----~pR~YSIsSsp~---i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~ 548 (710)
...+|||+.+.+|.. +.|+|||+|+|. -++.+.+ + ...|.+|.++.++........+..+.|.+|
T Consensus 24 ~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~v--k------~~~G~~t~~~~~~~~~~~~~~~~~v~v~GP 95 (210)
T cd06186 24 KWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLII--R------AKKGFTTRLLRKALKSPGGGVSLKVLVEGP 95 (210)
T ss_pred ccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEE--E------ecCChHHHHHHHHHhCcCCCceeEEEEECC
Confidence 445788876666654 689999999983 2333322 1 124888887777652000111236777788
Q ss_pred cCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcc-cchHHHHHHHHHcCCCcEEEE
Q 005185 549 QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMD-YIYEDELNNFVQSGALSQLIV 627 (710)
Q Consensus 549 ~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D-~ly~dEL~~~~~~~~~~~l~~ 627 (710)
.|.|..+.....++||||+||||||++++++++...........++.|+|++|+.+ | ..|.+||....+-....++.+
T Consensus 96 ~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~~~~~~~~~i 174 (210)
T cd06186 96 YGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQELEVDGEIEI 174 (210)
T ss_pred CCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhhccCCceEEE
Confidence 88886444456789999999999999999999886532111236899999999997 6 579999975111111002222
Q ss_pred EEecCCCCcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005185 628 AFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 679 (710)
Q Consensus 628 a~Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~ 679 (710)
.+++ +|+||| .+|+++++....+
T Consensus 175 ~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 175 YVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred EEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 2222 999999 8999999988765
No 94
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.61 E-value=1.9e-15 Score=139.34 Aligned_cols=92 Identities=23% Similarity=0.368 Sum_probs=72.1
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHh
Q 005185 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (710)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~ 188 (710)
|+|+|+|||||+|++++. ..+..+.+++.++ ..+ .++.+++ ++|||+|+.|+.+.+|++.+.+
T Consensus 1 IvY~S~TGNte~fv~~lg---------~~~~~i~~~~~d~------~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n 63 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKLG---------FQHIRIPVDETDD------IHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN 63 (125)
T ss_pred CEEEcccccHHHHHHHcC---------CCcEEeecCCcch------hhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh
Confidence 689999999999954432 1223445554332 124 5666655 9999999999999999888752
Q ss_pred hcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHH
Q 005185 189 QKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILAN 227 (710)
Q Consensus 189 ~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~ 227 (710)
+.+||||+||++| ++||.+++++.+++..
T Consensus 64 ----------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 64 ----------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred ----------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 7899999999999 9999999999999876
No 95
>PRK02551 flavoprotein NrdI; Provisional
Probab=99.57 E-value=1.2e-14 Score=138.48 Aligned_cols=138 Identities=20% Similarity=0.305 Sum_probs=92.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCC-CCCCCCchHHH-
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY-GDGEPTDNAAR- 181 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTy-G~G~~pdna~~- 181 (710)
|+++.|+|.|+||||++|+++|...+.+.........+++.++..++. +.+.....+|+++||| |.|++|+++.+
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~~~~p~vli~pTY~~gG~~~~~~~~~ 77 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETT---DFFPETEPFVAFLPTYLEGGNGIDNGDVE 77 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccc---cccccCCCEEEEEeeecCCCCCcccCccc
Confidence 467999999999999999999987765421012233466665543211 1245667899999999 88887776544
Q ss_pred -----HHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHH
Q 005185 182 -----FYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWREL 255 (710)
Q Consensus 182 -----F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~ 255 (710)
..++|... ...++.+||||+||++| ++||.+|+++++.+ +..-|+.. +-.++.+|++.-.+.
T Consensus 78 ~vp~~v~dFL~~~-----~N~~~~~gVigsGNrNfg~~F~~aa~~ia~~~---~vP~L~~f----El~GT~~Dv~~v~~~ 145 (154)
T PRK02551 78 ILTTPLGDFIAYH-----DNAKRCLGIIGSGNRNFNNQYCLTAKQYAKRF---GFPMLADF----ELRGTPSDIERIAAI 145 (154)
T ss_pred cchHHHHHHHcch-----hhhhheEEEEeecccHHHHHHHHHHHHHHHHc---CCCEEEEe----eccCCHHHHHHHHHH
Confidence 22233211 23678999999999999 89999999999776 44434322 233556665554444
Q ss_pred H
Q 005185 256 V 256 (710)
Q Consensus 256 l 256 (710)
|
T Consensus 146 ~ 146 (154)
T PRK02551 146 I 146 (154)
T ss_pred H
Confidence 3
No 96
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.56 E-value=1.7e-14 Score=160.01 Aligned_cols=146 Identities=15% Similarity=0.126 Sum_probs=114.0
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHH
Q 005185 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (710)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (710)
..+++|+|+|+|+|||||.+|+.|++.+.+...+..++++++.+.+.+ ++..++.+.+.+||++|||+.|.+| .+..
T Consensus 245 ~~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~--~i~~~~~~~d~ii~GspT~~~~~~~-~~~~ 321 (394)
T PRK11921 245 YQENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKN--DIITEVFKSKAILVGSSTINRGILS-STAA 321 (394)
T ss_pred CCcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHH--HHHHHHHhCCEEEEECCCcCccccH-HHHH
Confidence 356889999999999999999999999973222356788999877653 3445567899999999999888775 5999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHHHHHH
Q 005185 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPE 259 (710)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~ 259 (710)
|++++... .++|+++++|| +|.|+|.+.+.+.++|+++|++.+.|.....-.. ...+...+|-++|...
T Consensus 322 ~l~~l~~~-----~~~~K~~a~FG----sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~~ 392 (394)
T PRK11921 322 ILEEIKGL-----GFKNKKAAAFG----SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAES 392 (394)
T ss_pred HHHHhhcc-----CcCCCEEEEEe----cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 99998764 48899999999 5999999999999999999999887644332222 2234457777776543
No 97
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.56 E-value=6.6e-15 Score=179.59 Aligned_cols=169 Identities=15% Similarity=0.165 Sum_probs=118.6
Q ss_pred CChHHHHHHhcC-CCcccccccCCCC--ceEEEEEEEEeeCCCCcccCCccchhhh-ccCCCCCCCCCceE-EEEEecCC
Q 005185 477 PPLGVFFAAIVP-RLQPRYYSISSSP--RIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWA-PIFVRQSN 551 (710)
Q Consensus 477 ~p~~~~l~~i~p-~l~pR~YSIsSsp--~i~~tv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~i-~v~v~~g~ 551 (710)
.-+|||+.+.++ ...+|+|||++.+ .-.+++ +++ ..|..|.||+ ++.+|+ .+ .+.+|.|.
T Consensus 28 ~~PGQFV~l~~~~~~errplSIa~~~~~~g~i~l--~vk-------~vG~~T~~L~~~lk~Gd------~l~~v~GPlG~ 92 (1006)
T PRK12775 28 AEPGHFVMLRLYEGAERIPLTVADFDRKKGTITM--VVQ-------ALGKTTREMMTKFKAGD------TFEDFVGPLGL 92 (1006)
T ss_pred CCCCeeEEEEeCCCCeeEEEEecCcCCCCCEEEE--EEE-------ecCcHHHHHHhcCCCCC------EEeeeecCCCC
Confidence 357999965443 2346999999977 222333 222 2488999994 677765 45 57788887
Q ss_pred CcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEec
Q 005185 552 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSR 631 (710)
Q Consensus 552 F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr 631 (710)
|.... ..+++||||||+||||+++++++....+ .+++++||+|+.+ +++|.+||..+... ++++ +.
T Consensus 93 ~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~~g------~~v~li~g~R~~~-~l~~~del~~~~~~-----~~v~-td 158 (1006)
T PRK12775 93 PQHID-KAGHVVLVGGGLGVAPVYPQLRAFKEAG------ARTTGIIGFRNKD-LVFWEDKFGKYCDD-----LIVC-TD 158 (1006)
T ss_pred CCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHhCC------CcEEEEEeCCChH-HcccHHHHHhhcCc-----EEEE-EC
Confidence 65432 2468999999999999999999876532 4689999999997 99999999877532 2332 34
Q ss_pred CCC--CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 632 EGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 632 ~~~--~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
+++ .+++|++.+.+.. .. .....+|+||| ++|++.|.+.+.+.
T Consensus 159 dgs~G~~G~vt~~l~~~l----~~-~~~d~vy~CGP-~~Mm~av~~~~~~~ 203 (1006)
T PRK12775 159 DGSYGKPGFVTAALKEVC----EK-DKPDLVVAIGP-LPMMNACVETTRPF 203 (1006)
T ss_pred CCCCCCCCChHHHHHHHh----cc-CCCCEEEEECC-HHHHHHHHHHHHHC
Confidence 443 4678877665421 11 12347999999 89999999988653
No 98
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.54 E-value=3.9e-14 Score=160.22 Aligned_cols=146 Identities=12% Similarity=0.062 Sum_probs=113.8
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHH
Q 005185 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (710)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (710)
.+++|+|+|+|+|||||++|+.|++.+++.+.+..+++.++++.+.++ +..++.+++.+||++|||++|.+| .+..|
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~--i~~~~~~ad~vilGspT~~~~~~p-~~~~f 326 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNE--ILTNVFRSKGVLVGSSTMNNVMMP-KIAGL 326 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHH--HHhHHhhCCEEEEECCccCCcchH-HHHHH
Confidence 567899999999999999999999999877544567889998877532 334456789999999999777666 69999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHHHHHHH
Q 005185 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (710)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (710)
++.+... .++|+++++|| +|.|+|.+++.+.++|+++|++.+ +........ ...+...++-+.|.+.+
T Consensus 327 l~~l~~~-----~l~gK~~~vFG----Sygw~g~a~~~~~~~l~~~g~~~~-~~l~~~~~P~ee~~~~~~~~g~~la~~~ 396 (479)
T PRK05452 327 LEEITGL-----RFRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFEMS-LSLKAKWRPDQDALELCREHGREIARQW 396 (479)
T ss_pred HHHhhcc-----CcCCCEEEEEE----CCCcCcHHHHHHHHHHHHCCCEEe-ccEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 9988764 48999999999 689999999999999999999975 322222221 22344566777776655
Q ss_pred H
Q 005185 261 D 261 (710)
Q Consensus 261 ~ 261 (710)
.
T Consensus 397 ~ 397 (479)
T PRK05452 397 A 397 (479)
T ss_pred h
Confidence 4
No 99
>PRK05569 flavodoxin; Provisional
Probab=99.51 E-value=1.5e-13 Score=130.47 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=94.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCC-chHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARF 182 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~p-dna~~F 182 (710)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..+++.++.+.+. .++.+++.++|++|||+.|.+| +.+..|
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsPty~~~~~~~~~~~~~ 72 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAG--AEVTIKHVADAKV------EDVLEADAVAFGSPSMDNNNIEQEEMAPF 72 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCC--CeEEEEECCcCCH------HHHhhCCEEEEECCCcCCCcCChHHHHHH
Confidence 468999999999999999999999998765 4578888887764 3578999999999999887764 799999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005185 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (710)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (710)
++.|... .++++++++||.+... ++.+.+.+.+.|.+.|++.+.+
T Consensus 73 ~~~l~~~-----~~~~K~v~~f~t~g~~---~~~~~~~~~~~l~~~g~~~~~~ 117 (141)
T PRK05569 73 LDQFKLT-----PNENKKCILFGSYGWD---NGEFMKLWKDRMKDYGFNVIGD 117 (141)
T ss_pred HHHhhcc-----CcCCCEEEEEeCCCCC---CCcHHHHHHHHHHHCCCeEeee
Confidence 9998653 3689999999964322 2456788899999999987655
No 100
>PRK05568 flavodoxin; Provisional
Probab=99.51 E-value=1.4e-13 Score=130.75 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=93.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCC-chHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-DNAARF 182 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~p-dna~~F 182 (710)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+.+. .++.+++.+||++|||+.|.+| +.+..|
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g--~~v~~~~~~~~~~------~~~~~~d~iilgsp~y~~~~~~~~~~~~f 72 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENG--AEVKLLNVSEASV------DDVKGADVVALGSPAMGDEVLEEGEMEPF 72 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCC--CeEEEEECCCCCH------HHHHhCCEEEEECCccCcccccchhHHHH
Confidence 568999999999999999999999998765 4578889887764 3578899999999999888864 789999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHH-HHHHHHHHHHHHHcCCccccc
Q 005185 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHF-NKIAKVVDEILANQGAKRLVP 235 (710)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~l~~ 235 (710)
++.+.. .++++++++||. |.|- ..+.+.+.+.|+++|++.+.+
T Consensus 73 ~~~~~~------~~~~k~~~~f~t----~G~~~~~~~~~~~~~l~~~g~~~~~~ 116 (142)
T PRK05568 73 VESISS------LVKGKKLVLFGS----YGWGDGEWMRDWVERMEGYGANLVNE 116 (142)
T ss_pred HHHhhh------hhCCCEEEEEEc----cCCCCChHHHHHHHHHHHCCCEEeCC
Confidence 988754 368999999996 2221 345788889999999987765
No 101
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.49 E-value=1.9e-13 Score=128.14 Aligned_cols=121 Identities=22% Similarity=0.377 Sum_probs=88.2
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCC----CCCCchHHH
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGD----GEPTDNAAR 181 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~----G~~pdna~~ 181 (710)
.+.|+|.|.||||+.||++|.... ..+++++.+ .+..+..+++++||||+ |+.|+.+.+
T Consensus 2 ~~~I~Y~S~TGNt~~f~~kl~~~~---------~~i~i~~~~--------~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~ 64 (134)
T PRK03600 2 MMLVYFSSKTGNTHRFVQKLGLPA---------TRIPINERE--------RLEVDEPYILITPTYGGGGTAGAVPKQVIR 64 (134)
T ss_pred cEEEEEECCChhHHHHHHHhCCcc---------eEEecCCCc--------cccCCCCEEEEEeccCCCCcCCcccHHHHH
Confidence 578999999999999998885431 245554321 24456789999999999 699999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCcccccccccCCCCCc---hhhHHHHHHHHH
Q 005185 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCI---EDDFSAWRELVW 257 (710)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~---e~~f~~W~~~l~ 257 (710)
|++...+ ..+.++|||.||++| ++||.+++.+.+++. +|+..-=+..+. .+.+..|.+++|
T Consensus 65 Fl~~~~n--------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~-------vp~l~k~El~gt~~Dv~~~~~~~~~~~ 129 (134)
T PRK03600 65 FLNDEHN--------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ-------VPLLYRFELSGTNEDVENVRKGVEEFW 129 (134)
T ss_pred HHhcccc--------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC-------CCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 8777443 246899999999999 899999999999875 333221122222 344677877776
Q ss_pred H
Q 005185 258 P 258 (710)
Q Consensus 258 ~ 258 (710)
.
T Consensus 130 ~ 130 (134)
T PRK03600 130 Q 130 (134)
T ss_pred h
Confidence 5
No 102
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.33 E-value=5.4e-12 Score=147.33 Aligned_cols=179 Identities=13% Similarity=0.127 Sum_probs=113.0
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhccCC----CC-CCCCCceEE
Q 005185 476 KPPLGVFFAAIVPR---LQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP----ME-KSNDCSWAP 544 (710)
Q Consensus 476 ~~p~~~~l~~i~p~---l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~----g~-~~~~~~~i~ 544 (710)
+..+||++.+-+|. .+.|||||+|+| .-.+.+.+.. .|-.|+.|.+... .+ .......+.
T Consensus 338 ~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~---------~gG~T~~L~~~i~~~l~~g~~~~~~~~v~ 408 (722)
T PLN02844 338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKC---------EGGWTNSLYNKIQAELDSETNQMNCIPVA 408 (722)
T ss_pred CcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEe---------CCCchHHHHHHHHhhccCCCCcccceEEE
Confidence 44578887655554 367999999976 2222222211 2444566644321 11 111112566
Q ss_pred EEEecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhC-CCCCcEEEEEeecCCCcccchHHHHHH-----HHH
Q 005185 545 IFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNN-----FVQ 618 (710)
Q Consensus 545 v~v~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~-----~~~ 618 (710)
|.+|.|.|..+....++++|||||||||||++++++........ ....++.|+|++|+.+ |..|.+|+.. +.+
T Consensus 409 VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~~~~ 487 (722)
T PLN02844 409 IEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQSSN 487 (722)
T ss_pred EECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHhHHH
Confidence 77788988765444578999999999999999999997643211 1225799999999997 9999999863 222
Q ss_pred cCCCcEEEEEEecCCCCcccccchhhcc--hhHHhhcccCCcEEEEecCc
Q 005185 619 SGALSQLIVAFSREGPTKEYVQHKMMEK--SSDIWNMLSEGAYLYVCGDA 666 (710)
Q Consensus 619 ~~~~~~l~~a~Sr~~~~k~yVq~~l~~~--~~~v~~~l~~~~~iyvCGpa 666 (710)
. ...+++...+|+......+.+.+... ...++ +-.+...+.+|||.
T Consensus 488 ~-~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~ 535 (722)
T PLN02844 488 Q-LNLKLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLE 535 (722)
T ss_pred h-cCceEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCC
Confidence 2 24477777899876544555554431 11222 22455789999994
No 103
>PLN02292 ferric-chelate reductase
Probab=99.32 E-value=7.6e-12 Score=145.70 Aligned_cols=174 Identities=15% Similarity=0.126 Sum_probs=109.2
Q ss_pred ChHHHHHHhcCC---CcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCC
Q 005185 478 PLGVFFAAIVPR---LQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSN 551 (710)
Q Consensus 478 p~~~~l~~i~p~---l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~ 551 (710)
-+||++-..+|. .+.|||||+|+| .-+++ ++.+ ..|..|++|.+....++....-++.|.+|.|.
T Consensus 353 ~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~--l~IK-------~~G~~T~~L~~~l~~gd~i~~~~V~VeGPYG~ 423 (702)
T PLN02292 353 SPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLS--VMIK-------SQGKWSTKLYHMLSSSDQIDRLAVSVEGPYGP 423 (702)
T ss_pred CCCCeEEEEEccCCccceeeeEeeccCCCCCCEEE--EEEE-------cCCchhHHHHHhCCCCCccccceEEEECCccC
Confidence 456554333453 478999999987 12232 2222 24778999987654333211124567778888
Q ss_pred CcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhC-CCCCcEEEEEeecCCCcccchHHHHHH-------HHHcCCCc
Q 005185 552 FKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNN-------FVQSGALS 623 (710)
Q Consensus 552 F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~-------~~~~~~~~ 623 (710)
+..+....++++|||||+||||+++++++..+....+ ....++.|+|++|+.+ |.++.+++.. +.++. ..
T Consensus 424 ~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~~-~~ 501 (702)
T PLN02292 424 ASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELSSFI-DI 501 (702)
T ss_pred CccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhcC-Cc
Confidence 7644344578999999999999999999987653211 1125799999999997 9988776542 22333 44
Q ss_pred EEEEEEecCCCCc-ccccchhhcchhHHhhcc-----cCCcEEEEecCc
Q 005185 624 QLIVAFSREGPTK-EYVQHKMMEKSSDIWNML-----SEGAYLYVCGDA 666 (710)
Q Consensus 624 ~l~~a~Sr~~~~k-~yVq~~l~~~~~~v~~~l-----~~~~~iyvCGpa 666 (710)
++.+.++|+.+.+ .|-++ ..+.+.+.+ .+...+.+|||.
T Consensus 502 ~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~ 546 (702)
T PLN02292 502 QIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPN 546 (702)
T ss_pred eEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCC
Confidence 7777788876432 22222 222222221 256789999993
No 104
>PRK06242 flavodoxin; Provisional
Probab=99.30 E-value=1.4e-11 Score=117.97 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=87.1
Q ss_pred ceEEEEEeCC-CchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 105 QKVTIFFGTQ-TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 105 ~~v~I~YgSq-tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
|+++|+|+|+ ||||+.+|+.|++.+. ++++++.+... .++.+++.+||++||| .|.+|+.+..|+
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-------~~~~~i~~~~~------~~~~~~d~ii~g~pvy-~~~~~~~~~~fl 66 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD-------AEVIDPGDVNP------EDLSEYDLIGFGSGIY-FGKFHKSLLKLI 66 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC-------cEEecHHHCCc------ccHhHCCEEEEeCchh-cCCcCHHHHHHH
Confidence 5789999999 8999999999999883 35667665443 3477899999999999 799999999998
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccc
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPV 236 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~ 236 (710)
+.+.. +.++++++||.+......+ .+.+.+.|+.+|++.+...
T Consensus 67 ~~~~~-------~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~~ 109 (150)
T PRK06242 67 EKLPP-------VSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGEF 109 (150)
T ss_pred Hhhhh-------hcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEEE
Confidence 87742 5789999999776554333 7899999999999987653
No 105
>PLN02631 ferric-chelate reductase
Probab=99.27 E-value=9.9e-12 Score=144.48 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=101.8
Q ss_pred CCCChHHHHHHhcCC---CcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhccCC-CCCCCCCceEEEEE
Q 005185 475 AKPPLGVFFAAIVPR---LQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP-MEKSNDCSWAPIFV 547 (710)
Q Consensus 475 ~~~p~~~~l~~i~p~---l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~-g~~~~~~~~i~v~v 547 (710)
.+.-+||++-+.+|. .+.|||||+|+| .-++++ ..+ ..|..|++|.+... +++ ...+.+.+
T Consensus 333 ~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~--~IK-------~~Gg~T~~L~~~l~~~g~---~i~V~VeG 400 (699)
T PLN02631 333 LHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSV--VIR-------RQGSWTQKLYTHLSSSID---SLEVSTEG 400 (699)
T ss_pred CcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEE--EEE-------cCChHHHHHHHhhhcCCC---eeEEEEEC
Confidence 345568876555554 467999999987 122222 222 25888999987543 221 12456667
Q ss_pred ecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhC-CCCCcEEEEEeecCCCcccchHHHHHHH------HHcC
Q 005185 548 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF------VQSG 620 (710)
Q Consensus 548 ~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~------~~~~ 620 (710)
|.|.|..+.....++||||||+||||++|++++..++...+ .+.+++.|+||+|+.+ |.+|.|||..+ .++
T Consensus 401 PYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~~- 478 (699)
T PLN02631 401 PYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDISR- 478 (699)
T ss_pred CCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhhhc-
Confidence 88877665455578999999999999999999998653221 1235799999999997 99999999863 222
Q ss_pred CCcEEEEEEecCCC
Q 005185 621 ALSQLIVAFSREGP 634 (710)
Q Consensus 621 ~~~~l~~a~Sr~~~ 634 (710)
...++...+||++.
T Consensus 479 ~ni~i~iyVTR~~~ 492 (699)
T PLN02631 479 LNLRIEAYITREDK 492 (699)
T ss_pred CceEEEEEEcCCCC
Confidence 35578888899754
No 106
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.10 E-value=8e-10 Score=111.31 Aligned_cols=126 Identities=18% Similarity=0.121 Sum_probs=95.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCceeEEecCCCCCCcch--------------HHHHhhcCCCeEEEEec
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEED--------------EYEEKLKKENIVFFFLA 168 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~--------------~~~~~l~~~~~~if~~s 168 (710)
|++|+|+|+|++|||+++|+.+++.+.+ .+ ..++++++.+..+++. .-.+++..++.+||++|
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G--~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAG--AEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCC--cEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEec
Confidence 4689999999999999999999999986 54 5678888864332110 00467888999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
|| .|.++..++.|++++..... ...+.++.+++|+.+.....---...+.+...|..+|+..+
T Consensus 79 ty-~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv 141 (200)
T PRK03767 79 TR-FGNMAGQMRNFLDQTGGLWA-KGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIV 141 (200)
T ss_pred cc-CCCchHHHHHHHHHhccccc-cCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEe
Confidence 99 99999999999999865321 23588999999997544433333445666677778888754
No 107
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.09 E-value=9.6e-10 Score=110.46 Aligned_cols=125 Identities=19% Similarity=0.106 Sum_probs=95.4
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchH------------H--HHhhcCCCeEEEEecCCC
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDE------------Y--EEKLKKENIVFFFLATYG 171 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~------------~--~~~l~~~~~~if~~sTyG 171 (710)
+|+|+|+|++|||+++|+.+++.+++.. ...++++++.+...++.. + .+++.+++.+||++|||
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~-g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty- 79 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVD-GAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR- 79 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcC-CCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc-
Confidence 6999999999999999999999997641 246788887654321100 0 14577899999999999
Q ss_pred CCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
.|.++..++.|++++.... ....+.++..++|+.+.....-...+...+...|..+|+..+
T Consensus 80 ~g~~~~~lk~fld~~~~~~-~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv 140 (197)
T TIGR01755 80 FGNMASQMRNFLDQTGGLW-ASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIV 140 (197)
T ss_pred ccCccHHHHHHHHhccccc-cccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEe
Confidence 9999999999999987542 122588999999997655555565666777778888898754
No 108
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.09 E-value=3.6e-10 Score=111.58 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=74.6
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (710)
|+++|+|+|.||||+++|+.|++.+.. + ..++++++++... .++..++.+||++||| .|.++..+..|++
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g--~~v~~~~~~~~~~------~~l~~yD~vIlGspi~-~G~~~~~~~~fl~ 70 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-G--IQCDVVNLHRIEE------PDLSDYDRVVIGASIR-YGHFHSALYKFVK 70 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-C--CeEEEEEhhhcCc------cCHHHCCEEEEECccc-cCCcCHHHHHHHH
Confidence 479999999999999999999999976 4 4578888877653 2477899999999999 9999999999987
Q ss_pred HHHhhcCCCCCcCCceEEEEecc
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGLG 207 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlG 207 (710)
.... .|+++++++|++|
T Consensus 71 ~~~~------~l~~K~v~~F~v~ 87 (177)
T PRK11104 71 KHAT------QLNQMPSAFFSVN 87 (177)
T ss_pred HHHH------HhCCCeEEEEEec
Confidence 7653 4899999999988
No 109
>PRK07116 flavodoxin; Provisional
Probab=99.06 E-value=1e-09 Score=106.58 Aligned_cols=133 Identities=14% Similarity=0.195 Sum_probs=87.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcc--------------------h---HHHHhhcCC
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE--------------------D---EYEEKLKKE 160 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~--------------------~---~~~~~l~~~ 160 (710)
|++++|+|.|.||||+.+|+.|++.+.... +++.+...|...+ . ....++..+
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~----~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 77 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGADL----FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEY 77 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCCe----EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhC
Confidence 688999999999999999999999986431 2444433332110 0 012356789
Q ss_pred CeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccccccc
Q 005185 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 239 (710)
Q Consensus 161 ~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~g 239 (710)
+.++|++|+| .|.+|..+..|++.+ .++++++++|+. |.+.+ +.+...+.+.+.+ ..+.+.-..
T Consensus 78 D~Iiig~Pv~-~~~~p~~v~~fl~~~--------~l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~~---~~~~~~~~~ 142 (160)
T PRK07116 78 DVIFLGFPIW-WYVAPRIINTFLESY--------DFSGKTVIPFATSGGSGI---GNAEKELKKSYPD---ANWKEGRLL 142 (160)
T ss_pred CEEEEECChh-ccccHHHHHHHHHhc--------CCCCCEEEEEEeCCCCCc---CcHHHHHHHHCCc---CccccCeee
Confidence 9999999999 699999888887643 378899999998 65554 4444555555432 222221111
Q ss_pred CCCCCchhhHHHHHHHH
Q 005185 240 DDDQCIEDDFSAWRELV 256 (710)
Q Consensus 240 D~~~~~e~~f~~W~~~l 256 (710)
+ ....++++++|.+++
T Consensus 143 ~-~~~~~~~i~~wl~~~ 158 (160)
T PRK07116 143 N-GGASKEEIKEWINKL 158 (160)
T ss_pred c-CCCcHHHHHHHHHHc
Confidence 1 112366799998764
No 110
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=98.97 E-value=1.1e-09 Score=100.52 Aligned_cols=95 Identities=28% Similarity=0.459 Sum_probs=64.0
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCC----CCchHHHHHH
Q 005185 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGE----PTDNAARFYK 184 (710)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~----~pdna~~F~~ 184 (710)
|+|.|.||||++|+++|...+... . +.+...+ +.+.-....|+++||||.|+ .|....+|++
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~~~------~-i~~~~~~-------~~~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~ 66 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAPAI------R-IPIREIS-------PDLEVDEPFVLITPTYGFGENDGGVPKQVIRFLE 66 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--SEE------E-E-SSCTT-------STS--SS-EEEEEE-BTTTBSSTSS-HHHHHHHH
T ss_pred CEEECCCcCHHHHHHHHcccchhc------c-ccccccc-------ccccCCCCEEEEecccCCCCCCCCCCHHHHHHHH
Confidence 799999999999998887644321 1 2222111 11334566899999999999 9999888887
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHH
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEIL 225 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L 225 (710)
+-.+. ..-.+|.|.||++| +.||.+|+++.+..
T Consensus 67 ~~~N~--------~~l~GVigSGNrNfg~~f~~aa~~ia~ky 100 (122)
T PF07972_consen 67 NPDNR--------KLLRGVIGSGNRNFGDNFCLAADKIAEKY 100 (122)
T ss_dssp SHHHG--------GGEEEEEEEE-GGGGGGTTHHHHHHHHHH
T ss_pred HHHHH--------hhheeEEecCCcHHHHHHHHHHHHHHHHc
Confidence 66543 46789999999999 89999999998776
No 111
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.96 E-value=3e-09 Score=114.86 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=102.8
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (710)
++|.|+|.|++|+|+.+|+.|++.|.+.| +.|.++++.+.+. .++.+.+...+.+++++||+ ++++++.+..++.
T Consensus 247 ~~V~l~Y~smyg~T~~ma~aiaegl~~~g--v~v~~~~~~~~~~--~eI~~~i~~a~~~vvGsPT~-~~~~~p~i~~~l~ 321 (388)
T COG0426 247 GKVDLIYDSMYGNTEKMAQAIAEGLMKEG--VDVEVINLEDADP--SEIVEEILDAKGLVVGSPTI-NGGAHPPIQTALG 321 (388)
T ss_pred ceEEEEEecccCCHHHHHHHHHHHhhhcC--CceEEEEcccCCH--HHHHHHHhhcceEEEecCcc-cCCCCchHHHHHH
Confidence 38999999999999999999999999887 5578888877654 56778889999999999999 7778888999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (710)
.+... ..+++..+||| +|.|-..+.+.+.++|+++|-+...+
T Consensus 322 ~v~~~-----~~~~k~~~vfg----S~GW~g~av~~i~~~l~~~g~~~~~~ 363 (388)
T COG0426 322 YVLAL-----APKNKLAGVFG----SYGWSGEAVDLIEEKLKDLGFEFGFD 363 (388)
T ss_pred HHHhc-----cCcCceEEEEe----ccCCCCcchHHHHHHHHhcCcEEecc
Confidence 88865 36788899999 78999999999999999999987665
No 112
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.87 E-value=5.6e-10 Score=112.56 Aligned_cols=176 Identities=18% Similarity=0.292 Sum_probs=101.5
Q ss_pred CCChHHHHHHh--cCCC-----cccccccCCCC-ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEE
Q 005185 476 KPPLGVFFAAI--VPRL-----QPRYYSISSSP-RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFV 547 (710)
Q Consensus 476 ~~p~~~~l~~i--~p~l-----~pR~YSIsSsp-~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v 547 (710)
...+||++... .|++ ..|.||..+.. +..+.+++. +...|+.|+|+++-...|+ .+.+..
T Consensus 180 ~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr-------~~A~G~VS~~~H~~~KVGD-----~v~~S~ 247 (385)
T KOG3378|consen 180 HAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVR-------RVAGGVVSNFVHDNLKVGD-----IVGVSP 247 (385)
T ss_pred cCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEe-------ehhchhhHHHhhccccccc-----eeeccC
Confidence 34567776421 1332 23455555544 444444432 3456999999998766664 577888
Q ss_pred ecCCCcCCC---CCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcC-CCc
Q 005185 548 RQSNFKLPA---DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALS 623 (710)
Q Consensus 548 ~~g~F~lp~---~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~-~~~ 623 (710)
|.|+|.... +..+|++++++|+||+|+++++++... -|..|- +..-++++..+. ...
T Consensus 248 PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~-------------C~~~RP------~~~~~~~~~~K~k~~~ 308 (385)
T KOG3378|consen 248 PAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL-------------CYSSRP------FKQWLEQLKLKYKENL 308 (385)
T ss_pred CCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh-------------cCCCCc------HHHHHHHHHHHHHHHH
Confidence 899997753 456999999999999999999998653 222231 111111111100 000
Q ss_pred EEEEEEecCCC--Ccccccchhhc--chhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHHHH
Q 005185 624 QLIVAFSREGP--TKEYVQHKMME--KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQE 683 (710)
Q Consensus 624 ~l~~a~Sr~~~--~k~yVq~~l~~--~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~~~ 683 (710)
++.-.||.+.+ ++.-|...+.. +.+.+-++-...++||.||| ...++.|.+.|.++..+
T Consensus 309 K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~~~ 371 (385)
T KOG3378|consen 309 KLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLGVE 371 (385)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhcCC
Confidence 11111222221 22233322221 22333333346799999999 89999999999987644
No 113
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=98.85 E-value=2.1e-08 Score=95.53 Aligned_cols=86 Identities=22% Similarity=0.355 Sum_probs=70.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHH
Q 005185 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (710)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~ 187 (710)
+|+|.|.||||+++|+.|++.+.+.+ ..+|+.+...+ ..++..++.+||++|+| .|.++..+.+|++.+.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~~-----~~v~~~~~~~~----~~~~~~yD~vi~gspiy-~g~~~~~~~~fi~~~~ 70 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEEG-----ELVDLEKVEED----EPDLSDYDAVIFGSPIY-AGRIPGEMREFIKKNK 70 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhhc-----cEEEHHhhhhc----ccccccCCEEEEEEEEE-CCcCCHHHHHHHHHHH
Confidence 58999999999999999999998753 45666654211 14678999999999999 7999999999999876
Q ss_pred hhcCCCCCcCCceEEEEeccCC
Q 005185 188 EQKEGGEWLQKLKYGVFGLGNR 209 (710)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds 209 (710)
+ .|+++++++|..|-.
T Consensus 71 ~------~l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 71 D------NLKNKKVALFSVGGS 86 (143)
T ss_pred H------HHcCCcEEEEEEeCC
Confidence 5 378999999998644
No 114
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=98.76 E-value=3.5e-08 Score=90.53 Aligned_cols=124 Identities=19% Similarity=0.317 Sum_probs=84.4
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCC----CCCchHHH
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDG----EPTDNAAR 181 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G----~~pdna~~ 181 (710)
.+.|+|.|.||||.+|.++|. + +...+.+...++ .+.-...+|+++||||.| +.|....+
T Consensus 2 ~~~v~f~S~SgNt~RFv~kL~--~----~~~~I~~~~~~~----------~~~v~epyvlitpTyg~G~~~~~Vp~~vi~ 65 (141)
T COG1780 2 MLLVYFSSLSGNTHRFVEKLG--L----PAVRIPLNREED----------PIEVDEPYVLITPTYGGGGTVGAVPKQVIR 65 (141)
T ss_pred ceEEEEEecCccHHHHHHHhC--C----CceecccccccC----------CccCCCCeEEEeccccCCCccCccCHHHHH
Confidence 478999999999999998887 1 111122221111 133445689999999999 88988666
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhh---HHHHHHHHH
Q 005185 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD---FSAWRELVW 257 (710)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~---f~~W~~~l~ 257 (710)
|+..-. ...+.-+|.|.||++| ..||.+|+.+.+++ |.--++.. +-.++.+| +.+|..++|
T Consensus 66 FLn~~~--------Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~F----EL~GT~~Dv~~v~~~v~~~~ 130 (141)
T COG1780 66 FLNNEH--------NRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRF----ELLGTAEDVAAVRKGVTEFW 130 (141)
T ss_pred Hhcccc--------chhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEE----eccCCHHHHHHHHHHHHHHH
Confidence 643322 3467899999999999 89999999998776 43333322 22244444 667877777
Q ss_pred HHH
Q 005185 258 PEL 260 (710)
Q Consensus 258 ~~L 260 (710)
+..
T Consensus 131 ~~~ 133 (141)
T COG1780 131 KRA 133 (141)
T ss_pred HhC
Confidence 643
No 115
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.76 E-value=1.8e-08 Score=96.95 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=49.1
Q ss_pred CeEEEecCCcchHHHHHHHHHHHhhh-hCCCCCcEEEEEeecCCCcccchHHHHHHHHHcC--CCcEEEEEEecCC
Q 005185 561 PIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG--ALSQLIVAFSREG 633 (710)
Q Consensus 561 piImIa~GTGIAPfrs~l~~~~~~~~-~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~--~~~~l~~a~Sr~~ 633 (710)
.++|||||+||+|+.+++++...... ......++.|+|-+|+.+.=..|.++|+++.... ...++.+.++++.
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~ 78 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRES 78 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT--
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCc
Confidence 48999999999999999999987654 2234578999999999983347886666554321 2456677666654
No 116
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=98.66 E-value=1.6e-07 Score=89.94 Aligned_cols=124 Identities=20% Similarity=0.287 Sum_probs=97.3
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCCC---------------CcchHHHHhhcCCCeEEEEe
Q 005185 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYA---------------DEEDEYEEKLKKENIVFFFL 167 (710)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~---------------~~~~~~~~~l~~~~~~if~~ 167 (710)
|||+|++||.. |+|+.+|+.+++.+++.+ ..++++|+.++. .+-.++.+++.+.+.+||++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 68999999986 999999999999998874 678899998862 11123456788999999999
Q ss_pred cCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 168 ATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
|+| .|.+|.-++.|++|+.. .....+.++.+++++.|.+.... ..+...+...|..+|+.-+-
T Consensus 79 P~y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~ 141 (152)
T PF03358_consen 79 PVY-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVP 141 (152)
T ss_dssp EEB-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEEC
T ss_pred cEE-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcC
Confidence 999 99999999999999973 11236899999999888665433 33567788888888987553
No 117
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=98.56 E-value=2.7e-07 Score=89.37 Aligned_cols=96 Identities=24% Similarity=0.415 Sum_probs=73.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHH
Q 005185 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (710)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~ 187 (710)
+|+|.|.||||+++|+.|++.+.. ..++++++... .+.++++++++..+| .|.+++.+++|++.|
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~------~~~~~~~~~~~-------~~~~yD~i~lG~w~d-~G~~d~~~~~fl~~l- 65 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA------KDIVSVEEPPE-------DLEDYDLIFLGFWID-KGTPDKDMKEFLKKL- 65 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC------ceeEecccccc-------CCCCCCEEEEEcCcc-CCCCCHHHHHHHHHc-
Confidence 489999999999999999998864 25677766552 267899999999999 899999988886654
Q ss_pred hhcCCCCCcCCceEEEEeccCC--chHHHHHHHHHHHHHHHH
Q 005185 188 EQKEGGEWLQKLKYGVFGLGNR--QYEHFNKIAKVVDEILAN 227 (710)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds--~Y~~f~~~~k~ld~~L~~ 227 (710)
+++++++||..-. .=+|+..+.+++...+.+
T Consensus 66 ---------~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 66 ---------KGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred ---------cCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 5688999986311 125667676666666654
No 118
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=98.43 E-value=4e-07 Score=85.73 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=75.6
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (710)
|+++|+|+|++|+|.++|+.||.+|.+.| ..|++.|+..... .++..++.+|++.|-| .|........|++
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g--~qvdi~dl~~~~~------~~l~~ydavVIgAsI~-~~h~~~~~~~Fv~ 71 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESG--IQVDIQDLHAVEE------PALEDYDAVVIGASIR-YGHFHEAVQSFVK 71 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcC--Ceeeeeehhhhhc------cChhhCceEEEecchh-hhhhHHHHHHHHH
Confidence 57999999999999999999999999886 4577888765441 2578899999999999 9999999999988
Q ss_pred HHHhhcCCCCCcCCceEEEEecc
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGLG 207 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlG 207 (710)
.-.+. |+++..|+|..+
T Consensus 72 k~~e~------L~~kP~A~f~vn 88 (175)
T COG4635 72 KHAEA------LSTKPSAFFSVN 88 (175)
T ss_pred HHHHH------HhcCCceEEEee
Confidence 87763 889999999875
No 119
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.35 E-value=2.1e-06 Score=83.10 Aligned_cols=132 Identities=17% Similarity=0.329 Sum_probs=75.3
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcc---------h--H------------HHHhhcCCCe
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE---------D--E------------YEEKLKKENI 162 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~---------~--~------------~~~~l~~~~~ 162 (710)
|++|+|-|+||||+.+|+.|++.+... -+++...+.|..++ . + ...++.+++.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~gad----i~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTGAD----IFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-E----EEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHCCC----EEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 579999999999999999999876532 23444444444300 0 0 0125688999
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCcccccccccCC
Q 005185 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD 241 (710)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~ 241 (710)
++++.|+| .|.+|.-+..|++.. .++|++++.|-. |.+.+ ..+.+.+.+.+. +|+..-.+....+
T Consensus 77 I~lG~PvW-~~~~~~pv~tFL~~~--------~~~gK~v~~F~T~ggs~~---~~~~~~l~~~~~--~a~i~~g~~~~~~ 142 (156)
T PF12682_consen 77 IFLGTPVW-WGTPPPPVRTFLEQY--------DFSGKTVIPFCTSGGSGF---GNSLEDLKKLCP--GATILEGLAINRG 142 (156)
T ss_dssp EEEEEEEE-TTEE-CHHHHHHHCT--------TTTTSEEEEEEE-SS--C---HHHHHHHHHH-T--TSEE---EE---S
T ss_pred EEEechHH-cCCCCHHHHHHHHhc--------CCCCCcEEEEEeeCCCCh---hHHHHHHHHHCC--CCEeecCeEEeCC
Confidence 99999999 999999988876533 388999999954 33333 333444444332 3443222222111
Q ss_pred CCCchhhHHHHHHHH
Q 005185 242 DQCIEDDFSAWRELV 256 (710)
Q Consensus 242 ~~~~e~~f~~W~~~l 256 (710)
+. .++++.+|.++|
T Consensus 143 ~~-~~~~i~~Wl~~i 156 (156)
T PF12682_consen 143 SV-SEEEIKEWLKKI 156 (156)
T ss_dssp ----HHHHHHHHHHT
T ss_pred Cc-CHHHHHHHHHhC
Confidence 11 578899998764
No 120
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=98.17 E-value=5.7e-05 Score=75.57 Aligned_cols=120 Identities=11% Similarity=0.161 Sum_probs=94.9
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcc-----------hHHHHhhcCCCeEEEEecCCC
Q 005185 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------DEYEEKLKKENIVFFFLATYG 171 (710)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-----------~~~~~~l~~~~~~if~~sTyG 171 (710)
++|+++.||-. ++|..+++.+.+.+.+.+ ..++++|+.++..++ ..+.+++...+.+||++|.|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g--~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y- 77 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLG--VEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY- 77 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCC--CEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-
Confidence 57999999984 889999999999998765 567788887665422 12346678889999999999
Q ss_pred CCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
.|..|.-.+.|++|+.. ..+.++.+++++.| ....+.-..--.+...|..+||..+
T Consensus 78 ~~s~pg~LKn~iD~l~~-----~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 78 KASFSGALKTLLDLLPE-----RALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred CCCCCHHHHHHHHhCCh-----hhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 99999999999999953 25899999999998 5555555444567778888999854
No 121
>PRK06934 flavodoxin; Provisional
Probab=98.13 E-value=2.9e-05 Score=78.89 Aligned_cols=134 Identities=11% Similarity=0.194 Sum_probs=81.1
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCc----------------chH---HHHhhcCCCeEEE
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------------EDE---YEEKLKKENIVFF 165 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------------~~~---~~~~l~~~~~~if 165 (710)
..++|.=|+.||||+.+|+.|++.+.... .++...+.|..+ .++ ...++..++.+++
T Consensus 60 ~s~~~~~~~~~GnTk~vAe~Ia~~~gaDl----~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~I 135 (221)
T PRK06934 60 ASILQKNGEVLGSTQYVAQIIQEETGGDL----FRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFI 135 (221)
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHCCCE----EEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEE
Confidence 34555556666999999999999875432 333333333221 111 1356889999999
Q ss_pred EecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccc-ccc-cCCC
Q 005185 166 FLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVP-VGL-GDDD 242 (710)
Q Consensus 166 ~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~l~~-~g~-gD~~ 242 (710)
+.|.| -|.+|.-+..|++.. .++|++++.|-. |-+.. ....+.+.+.+. +|+.+.+ +.. +++-
T Consensus 136 G~PIW-wg~~P~~V~tFLe~~--------d~~GK~I~pF~T~ggsg~---g~s~~~i~~l~~--~a~~v~~Gl~i~~~~~ 201 (221)
T PRK06934 136 GYPIW-WYKMPMVMYSFFEQH--------DFSGKTLIPFTTHGGSRF---SDSLREIKRLQP--NAQLVTQGLAISRNDV 201 (221)
T ss_pred Ecchh-hccccHHHHHHHHhc--------CCCCCEEEEEEecCCCCc---cchHHHHHHHcC--CcceeccceeeecCcc
Confidence 99999 999999988886444 478999999964 22222 223333333321 3422322 111 2221
Q ss_pred --CCchhhHHHHHHHH
Q 005185 243 --QCIEDDFSAWRELV 256 (710)
Q Consensus 243 --~~~e~~f~~W~~~l 256 (710)
...++++..|.+++
T Consensus 202 ~~~~~~~~I~~Wl~~l 217 (221)
T PRK06934 202 TDDDTPKEIINWLNTL 217 (221)
T ss_pred cccchHHHHHHHHHHc
Confidence 12477899998764
No 122
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.07 E-value=1.4e-05 Score=93.96 Aligned_cols=132 Identities=14% Similarity=0.226 Sum_probs=79.1
Q ss_pred CChHHHHHHhcC---CCcccccccCCCCceEEEEEEEEeeCCCCcccCCccchhhhccCCC-CC--CC----CCceEEEE
Q 005185 477 PPLGVFFAAIVP---RLQPRYYSISSSPRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPM-EK--SN----DCSWAPIF 546 (710)
Q Consensus 477 ~p~~~~l~~i~p---~l~pR~YSIsSsp~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g-~~--~~----~~~~i~v~ 546 (710)
.-+||++-.-+| .++.+||||+|+|+- -.+.++.+ ..|..|+-|.+.... .. .. ...++.|.
T Consensus 382 y~~Gqyifv~~p~ls~~qwHPFTItSsp~d-d~lsvhIk-------~~g~wT~~L~~~~~~~~~~~~~~~~~~~~~i~Id 453 (646)
T KOG0039|consen 382 YKPGQYIFVNCPSLSKLEWHPFTITSAPED-DFLSVHIK-------ALGDWTEKLRNAFSEVSQPPESDKSYPFPKILID 453 (646)
T ss_pred CCCCCEEEEECccccccccCCceeecCCCC-CEEEEEEE-------ecCcHHHHHHHHHhhhcccccccccccCceEEEE
Confidence 346777644345 458899999999911 11222222 246666666554331 00 00 02356666
Q ss_pred EecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCC------------CCCcEEEEEeecCCCccc-chHHHH
Q 005185 547 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA------------ELGPSLLFFGCRNRKMDY-IYEDEL 613 (710)
Q Consensus 547 v~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~------------~~~~~~Lf~G~R~~~~D~-ly~dEL 613 (710)
+|.|.=.-+-..-..++|||+|.|++||.|++++.......+. ..+++..+|-||... ++ .+.+.+
T Consensus 454 GPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~-sf~wf~~~l 532 (646)
T KOG0039|consen 454 GPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQR-SFEWFKGLL 532 (646)
T ss_pred CCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEecccc-chHHHHHHH
Confidence 6755322111123447999999999999999999987654332 345778888899887 54 566666
Q ss_pred HHHH
Q 005185 614 NNFV 617 (710)
Q Consensus 614 ~~~~ 617 (710)
.+..
T Consensus 533 ~~v~ 536 (646)
T KOG0039|consen 533 TEVE 536 (646)
T ss_pred HHHH
Confidence 5554
No 123
>PRK00170 azoreductase; Reviewed
Probab=98.05 E-value=0.00011 Score=73.75 Aligned_cols=156 Identities=9% Similarity=-0.016 Sum_probs=103.4
Q ss_pred CceEEEEEeCC--C-chHHHHHHHHHHHHHhhcCCceeEEecCCCCCCc---------------------------chHH
Q 005185 104 KQKVTIFFGTQ--T-GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEY 153 (710)
Q Consensus 104 ~~~v~I~YgSq--t-Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~ 153 (710)
|++|+|++||- . |+|..+|+.+.+.++++++...++++||.+.+.. ..++
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 80 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL 80 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 57899999996 3 8899999999999998744466888888654421 0112
Q ss_pred HHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhc--------CCCCCcCCceEEEEeccCCch--HHHHHHHHHHHH
Q 005185 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDE 223 (710)
Q Consensus 154 ~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~--------~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~ 223 (710)
.+++...+.+||++|.| .+.+|.-.+.|++++.... .....+.++++.++......+ ..+..+...+..
T Consensus 81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~ 159 (201)
T PRK00170 81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT 159 (201)
T ss_pred HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence 35678889999999999 9999999999999985310 112357899998888532222 222344556677
Q ss_pred HHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHH
Q 005185 224 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (710)
Q Consensus 224 ~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (710)
.|.-+|.+.+-.+.....+. ..+.-.+|.++....+.
T Consensus 160 ~~~~~G~~~~~~~~~~g~~~-~~~~~~~~~~~a~~~~~ 196 (201)
T PRK00170 160 FLGFIGITDVEFVFAEGHNY-GPEKAAKIISAAKAAAD 196 (201)
T ss_pred HHHhcCCCceEEEEEecccC-CchHHHHHHHHHHHHHH
Confidence 77788988554433222221 22334555555444443
No 124
>PRK01355 azoreductase; Reviewed
Probab=97.98 E-value=0.0002 Score=72.07 Aligned_cols=159 Identities=12% Similarity=0.111 Sum_probs=108.6
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCceeEEecCCCCCCc-----------------chHHHHhhcCCCe
Q 005185 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------------EDEYEEKLKKENI 162 (710)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------------~~~~~~~l~~~~~ 162 (710)
|++|+|+.||-. |++..+|+.+.+++++.+....++++||.+.... ...+.+++...+.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 578999999985 8899999999999987655566788888665431 1124466788899
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhhc--------CC---CCCcCCceEEEEeccCCc--hHHHHHHHHHHHHHHHHcC
Q 005185 163 VFFFLATYGDGEPTDNAARFYKWFTEQK--------EG---GEWLQKLKYGVFGLGNRQ--YEHFNKIAKVVDEILANQG 229 (710)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~--------~~---~~~l~~~~~aVFGlGds~--Y~~f~~~~k~ld~~L~~lG 229 (710)
+||++|.| ++.+|.-.+.|++++.... .. ...+.+++..|+-..... +..+.....-+...+.-+|
T Consensus 81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 99999999 9999999999999986421 01 124778887776443322 2123455567777888889
Q ss_pred CcccccccccCCCC-Cch-hhHHHHHHHHHHHHHhh
Q 005185 230 AKRLVPVGLGDDDQ-CIE-DDFSAWRELVWPELDNL 263 (710)
Q Consensus 230 a~~l~~~g~gD~~~-~~e-~~f~~W~~~l~~~L~~~ 263 (710)
.+.+..+..+..+. ..+ +....|.+.-.+++.+.
T Consensus 160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (199)
T PRK01355 160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIEK 195 (199)
T ss_pred CCceeEEEEecccCCccccccHHHHHHHHHHHHHHH
Confidence 98665554433322 111 22677777665555543
No 125
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=97.96 E-value=0.00021 Score=70.23 Aligned_cols=121 Identities=12% Similarity=0.207 Sum_probs=91.8
Q ss_pred eEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcc-----------hHHHHhhcCCCeEEEEecCCCC
Q 005185 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE-----------DEYEEKLKKENIVFFFLATYGD 172 (710)
Q Consensus 106 ~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~-----------~~~~~~l~~~~~~if~~sTyG~ 172 (710)
+|+++.||- .|++.++++.+.+.+.+.+ ..++++|+.++...+ ..+.+++...+.+||++|.| +
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~--~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~ 77 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQG--VEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-K 77 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCC--CeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-c
Confidence 588999995 6889999999999998765 346777776543311 12345677889999999999 9
Q ss_pred CCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005185 173 GEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (710)
Q Consensus 173 G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (710)
|.+|...+.|++|+... .+.++.+++++.| ..+.++...-..+...|..+|+..+.+
T Consensus 78 ~sip~~LK~~iD~~~~~-----~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~~~ 134 (171)
T TIGR03567 78 ASYSGVLKALLDLLPQR-----ALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHILP 134 (171)
T ss_pred CCCCHHHHHHHHhCChh-----hhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccccc
Confidence 99999999999998532 4889999998887 456665544346888889999975433
No 126
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.90 E-value=2.5e-05 Score=93.80 Aligned_cols=79 Identities=16% Similarity=0.152 Sum_probs=58.4
Q ss_pred CChHHHHHHhcC-----CC-cccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEE
Q 005185 477 PPLGVFFAAIVP-----RL-QPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF 546 (710)
Q Consensus 477 ~p~~~~l~~i~p-----~l-~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~ 546 (710)
.-+|||+.+..+ .+ .|||+||++.+ .+.+.+.+ .|.+|.+|+++.+|+ .+.|.
T Consensus 819 ~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rv-----------VGkgT~~Ls~l~~Gd------~v~v~ 881 (1028)
T PRK06567 819 FKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFE-----------VGKSTSLCKTLSENE------KVVLM 881 (1028)
T ss_pred CCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEE-----------EChHHHHHhcCCCCC------EEEEE
Confidence 458999965432 22 56799999876 25554443 388999999998876 46788
Q ss_pred EecCC-CcCCCCCCCCeEEEecCCcchHH
Q 005185 547 VRQSN-FKLPADAKVPIIMIGPGTGLAPF 574 (710)
Q Consensus 547 v~~g~-F~lp~~~~~piImIa~GTGIAPf 574 (710)
+|.|+ |.++. .+.+++||||+|+||+
T Consensus 882 GPLG~pF~i~~--~k~vLLVgGGVGiApL 908 (1028)
T PRK06567 882 GPTGSPLEIPQ--NKKIVIVDFEVGNIGL 908 (1028)
T ss_pred cccCCCCCCCC--CCeEEEEEccccHHHH
Confidence 88664 87763 3569999999999983
No 127
>PRK09739 hypothetical protein; Provisional
Probab=97.88 E-value=0.00032 Score=70.61 Aligned_cols=157 Identities=12% Similarity=0.079 Sum_probs=103.8
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEecCCCCCC---------------------cchHHHHhhcCC
Q 005185 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------EEDEYEEKLKKE 160 (710)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------------~~~~~~~~l~~~ 160 (710)
|++|+|++||- .|++..+++.+.+++++.+ ..++++||.+... +-..+.+++...
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g--~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A 80 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERG--HQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEH 80 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCC--CEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhC
Confidence 68999999997 5778999999999998775 4577787755321 112345678889
Q ss_pred CeEEEEecCCCCCCCCchHHHHHHHHHhhcC---CCCCcCCceEEEEeccCCchHHHHH------HHHHHH-HHHHHcCC
Q 005185 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKE---GGEWLQKLKYGVFGLGNRQYEHFNK------IAKVVD-EILANQGA 230 (710)
Q Consensus 161 ~~~if~~sTyG~G~~pdna~~F~~~L~~~~~---~~~~l~~~~~aVFGlGds~Y~~f~~------~~k~ld-~~L~~lGa 230 (710)
+.+||++|.| .+.+|.-.+.|++++..... ....|.+++..++......|++|.. +...+. ..+.-+|.
T Consensus 81 D~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 159 (199)
T PRK09739 81 DALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGI 159 (199)
T ss_pred CEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCc
Confidence 9999999999 99999999999998753210 1234788888887653344444322 222233 33444576
Q ss_pred cccccccccCCC-----CCchhhHHHHHHHHHHHHHhh
Q 005185 231 KRLVPVGLGDDD-----QCIEDDFSAWRELVWPELDNL 263 (710)
Q Consensus 231 ~~l~~~g~gD~~-----~~~e~~f~~W~~~l~~~L~~~ 263 (710)
+.+-....+... ....+.+.+|.+++.....++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 197 (199)
T PRK09739 160 EDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDAL 197 (199)
T ss_pred cccceEEEecccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 654222222221 345667889988876665543
No 128
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=97.82 E-value=0.00037 Score=68.56 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=89.0
Q ss_pred eEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEecCCCCC------------C-cchHHHHhhcCCCeEEEEecCC
Q 005185 106 KVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYA------------D-EEDEYEEKLKKENIVFFFLATY 170 (710)
Q Consensus 106 ~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~------------~-~~~~~~~~l~~~~~~if~~sTy 170 (710)
||+++.||. .|++..+++.+.+.+.++.+ ..++++|+.+++ . +-.++.+++...+.+||++|+|
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g-~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y 79 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLG-ISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY 79 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcC-CeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC
Confidence 589999998 58999999999998765432 456777776542 1 1123456788899999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
+|.+|.-.+.|++|+.. ..+.++++++++.|.... +...+...+...|..+|+..+
T Consensus 80 -~~s~~~~LKn~lD~~~~-----~~l~~K~~~~v~~~g~~~-~~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 80 -RGSYTGLFKHLFDLVDP-----NALIGKPVLLAATGGSER-HALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred -cCcCcHHHHHHHHhcCH-----hHhCCCEEEEEEecCCcc-chHHHHHHHHHHHHHhCcccc
Confidence 99999999999999853 258899999999875433 222233446677778888754
No 129
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=97.75 E-value=0.00048 Score=69.16 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=109.3
Q ss_pred ceEEEEEeCCCc---hHHHHHHHHHHHHHhhcCCceeEEecCCCC--------------CC-----cchH-H-HHhhcCC
Q 005185 105 QKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDY--------------AD-----EEDE-Y-EEKLKKE 160 (710)
Q Consensus 105 ~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~--------------~~-----~~~~-~-~~~l~~~ 160 (710)
|+|+|++||..+ ++..+++.+.+.+++.++ ..++++||.+. .. .+.. - .+.+...
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~-~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~A 79 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGP-HEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWA 79 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTT-SEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHS
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCC-CEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHc
Confidence 689999999987 589999999999999875 56889999774 00 1111 1 2668889
Q ss_pred CeEEEEecCCCCCCCCchHHHHHHHHHhhcC----------CCCCcCCceEEEEe-ccCCch--H-------HHHHHHHH
Q 005185 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKE----------GGEWLQKLKYGVFG-LGNRQY--E-------HFNKIAKV 220 (710)
Q Consensus 161 ~~~if~~sTyG~G~~pdna~~F~~~L~~~~~----------~~~~l~~~~~aVFG-lGds~Y--~-------~f~~~~k~ 220 (710)
+.+||+.|.| .+.+|.-.+.|++.+..... ....|+|+++.++- .|...+ . .+..+..-
T Consensus 80 D~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~ 158 (199)
T PF02525_consen 80 DHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPY 158 (199)
T ss_dssp SEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHH
T ss_pred CcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHH
Confidence 9999999999 99999999999998743211 12468899877764 454432 2 45566666
Q ss_pred HHHHHHHcCCcccccccccCCC-CCchhhHHHHHHHHHHHH
Q 005185 221 VDEILANQGAKRLVPVGLGDDD-QCIEDDFSAWRELVWPEL 260 (710)
Q Consensus 221 ld~~L~~lGa~~l~~~g~gD~~-~~~e~~f~~W~~~l~~~L 260 (710)
+...+.-+|.+.+-....++.+ ...++..++|++++-+.|
T Consensus 159 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 159 LRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 7888888999988776655543 223777889988876543
No 130
>PRK13556 azoreductase; Provisional
Probab=97.74 E-value=0.0011 Score=67.14 Aligned_cols=156 Identities=10% Similarity=0.074 Sum_probs=104.5
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCceeEEecCCCCCC-----------------------------cc
Q 005185 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----------------------------EE 150 (710)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----------------------------~~ 150 (710)
|++|+|+.||-. +++..+++.+.+.+++.++...|+++||.+.+. +.
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 578999999964 788999999999998775556788888853211 00
Q ss_pred hHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCch-----HHHHHH
Q 005185 151 DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQY-----EHFNKI 217 (710)
Q Consensus 151 ~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y-----~~f~~~ 217 (710)
.++...+...+.+||++|-| ++.+|.-.+.+++|+.... . ....+.++++.|+...-..| +.+..+
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 12335677889999999999 9999999999999998531 0 11358899999987633345 344445
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHH
Q 005185 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (710)
Q Consensus 218 ~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (710)
...+...|.-+|++.+-. ...+......+..+++.++....+.
T Consensus 160 ~~~l~~il~~~G~~~~~~-v~~~~~~~~~~~~~~~~~~a~~~~~ 202 (208)
T PRK13556 160 VKYVASMMGFFGVTNMET-VVIEGHNQFPDKAEEIITAGLEEAA 202 (208)
T ss_pred HHHHHHHHHhcCCCceeE-EEEehhhcChhHHHHHHHHHHHHHH
Confidence 567778888889875432 2222111123345555554444443
No 131
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=97.36 E-value=0.0016 Score=66.01 Aligned_cols=122 Identities=14% Similarity=0.065 Sum_probs=85.7
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCC-------------------c-chHHHHhhcCCCeEEE
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------------E-EDEYEEKLKKENIVFF 165 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------------~-~~~~~~~l~~~~~~if 165 (710)
.|.+.|-| .|||+.+++.+++.+++.| +.++++.+.+++. | .+++.+.+.+.+.+||
T Consensus 5 ~I~gs~r~-~G~t~~l~~~~~~g~~~~G--~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~ 81 (207)
T COG0655 5 GINGSPRS-NGNTAKLAEAVLEGAEEAG--AEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIF 81 (207)
T ss_pred EEEecCCC-CCcHHHHHHHHHHHHHHcC--CEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEE
Confidence 45556666 7999999999999999885 5567777665410 1 1344566888999999
Q ss_pred EecCCCCCCCCchHHHHHHH-HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcc
Q 005185 166 FLATYGDGEPTDNAARFYKW-FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKR 232 (710)
Q Consensus 166 ~~sTyG~G~~pdna~~F~~~-L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 232 (710)
++||| .|..+..++.|++. ..-.. ....|.++..++|..+.+.-.........+...+...|...
T Consensus 82 gsPvy-~g~vsa~~K~fiDR~~~~~~-~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~ 147 (207)
T COG0655 82 GSPVY-FGNVSAQMKAFIDRSTGPLW-APGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIV 147 (207)
T ss_pred eCCee-cCCchHHHHHHHhhcchhhc-ccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeE
Confidence 99999 99999999999998 43222 22468888888888765543322234455666666666553
No 132
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=96.99 E-value=0.00019 Score=63.55 Aligned_cols=63 Identities=25% Similarity=0.258 Sum_probs=46.3
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEe
Q 005185 476 KPPLGVFFAAIVPR---LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVR 548 (710)
Q Consensus 476 ~~p~~~~l~~i~p~---l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~ 548 (710)
...+|||+.+.++. ...|+|||+|.| .++++|+. ...|.+|+||+++.+|+ .+.+.+|
T Consensus 29 ~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~---------~~~G~~S~~L~~l~~Gd------~v~i~gP 93 (99)
T PF00970_consen 29 DFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKR---------YPNGRVSRYLHQLKPGD------EVEIRGP 93 (99)
T ss_dssp SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEE---------CTTSHHHHHHHTSCTTS------EEEEEEE
T ss_pred ccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEe---------ccCCHHHHHHHhCCCCC------EEEEEEc
Confidence 45679998766551 246999999999 35544432 25799999999988776 6889999
Q ss_pred cCCCc
Q 005185 549 QSNFK 553 (710)
Q Consensus 549 ~g~F~ 553 (710)
.|+|.
T Consensus 94 ~G~f~ 98 (99)
T PF00970_consen 94 YGNFT 98 (99)
T ss_dssp ESSEE
T ss_pred ccccC
Confidence 99985
No 133
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=96.93 E-value=0.047 Score=55.78 Aligned_cols=128 Identities=8% Similarity=0.016 Sum_probs=90.3
Q ss_pred ccCCceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCCCC---cch------HHHHhhcCCCeEEEEecC
Q 005185 101 DDGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD---EED------EYEEKLKKENIVFFFLAT 169 (710)
Q Consensus 101 ~~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---~~~------~~~~~l~~~~~~if~~sT 169 (710)
...+.+|+++.||.. -++..+|+.+++.+.+.+ ..++++|+.+++. +.+ .+...+...+.+||++|-
T Consensus 23 ~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g--~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPE 100 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEG--RETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPE 100 (219)
T ss_pred CCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcC--CEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCc
Confidence 445689999999874 455778888888887553 5677887755432 111 133456778999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
| +|..|..-+.+++|+.........+.+|.++|.|.+-. .. --.+...+...|..+|+..+
T Consensus 101 Y-n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg-~~-g~ra~~~LR~vl~~l~a~v~ 161 (219)
T TIGR02690 101 R-HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGG-SQ-SFNAVNILRRLGRWMRMPTI 161 (219)
T ss_pred c-ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCc-Hh-HHHHHHHHHHHHHHCCCccc
Confidence 9 99999999999999975311112488999999985411 11 23355678888888988754
No 134
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=96.84 E-value=0.059 Score=53.59 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=99.8
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCC----cchHHHHhhcCCCeEEEEecCCCCCCCCc
Q 005185 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD----EEDEYEEKLKKENIVFFFLATYGDGEPTD 177 (710)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~----~~~~~~~~l~~~~~~if~~sTyG~G~~pd 177 (710)
..+++++|++++..+..-..-+.+.+.+++ . ..+.+.||...-+ |-......|...+.+||..|.| ...+|.
T Consensus 3 ~~~~kiLiI~aHP~~~~S~~n~~l~~~~~~-~--~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa 78 (184)
T PRK04930 3 SQPPKVLLLYAHPESQDSVANRVLLKPAQQ-L--EHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPA 78 (184)
T ss_pred CCCCEEEEEECCCCcccCHHHHHHHHHHHc-C--CceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcH
Confidence 356899999999986532222333333332 2 3477888765322 2222235688899999999999 999999
Q ss_pred hHHHHHHHHHhhc----CCCCCcCCceEEEEe-ccCCc--hHH--HHH-----HHHHHHHHHHHcCCcccccccccCCCC
Q 005185 178 NAARFYKWFTEQK----EGGEWLQKLKYGVFG-LGNRQ--YEH--FNK-----IAKVVDEILANQGAKRLVPVGLGDDDQ 243 (710)
Q Consensus 178 na~~F~~~L~~~~----~~~~~l~~~~~aVFG-lGds~--Y~~--f~~-----~~k~ld~~L~~lGa~~l~~~g~gD~~~ 243 (710)
-.+.+++...... ..+..|+|+++.+.- .|... |.. +++ .-.-++..+.-+|.+-+-+....+...
T Consensus 79 ~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~ 158 (184)
T PRK04930 79 LLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWARR 158 (184)
T ss_pred HHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCC
Confidence 9999888765421 122358999987764 44433 421 221 222223344456888777776666666
Q ss_pred CchhhHHHHHHHHHHHHHhhh
Q 005185 244 CIEDDFSAWRELVWPELDNLL 264 (710)
Q Consensus 244 ~~e~~f~~W~~~l~~~L~~~~ 264 (710)
..+++.++|.++....|.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~ 179 (184)
T PRK04930 159 QSPEELASHARAYGDWLANPL 179 (184)
T ss_pred CCHHHHHHHHHHHHHHHhhhh
Confidence 667888888888777666543
No 135
>PRK13555 azoreductase; Provisional
Probab=96.60 E-value=0.11 Score=52.88 Aligned_cols=128 Identities=10% Similarity=0.139 Sum_probs=89.9
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCceeEEecCCCCCCc--------------------ch--------
Q 005185 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYADE--------------------ED-------- 151 (710)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~--------------------~~-------- 151 (710)
|++++++++|-. ..+..+|+.+.+.+++.++...|.++||-+...+ ++
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 578999999943 5678888888888888776566788887542210 01
Q ss_pred -HHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCchH-----HHHHH
Q 005185 152 -EYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQYE-----HFNKI 217 (710)
Q Consensus 152 -~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y~-----~f~~~ 217 (710)
.+.+.+...+.+||++|-| ++.+|.-.+.|++|+.... . ....|++++..|++.....|. .....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 2335577889999999999 9999999999999987521 1 123589999999977333452 22223
Q ss_pred HHHHHHHHHHcCCcc
Q 005185 218 AKVVDEILANQGAKR 232 (710)
Q Consensus 218 ~k~ld~~L~~lGa~~ 232 (710)
..-+...|.-+|.+.
T Consensus 160 ~~yl~~il~~~Gi~~ 174 (208)
T PRK13555 160 VNYVTTVLGFWGITN 174 (208)
T ss_pred HHHHHHHHHhcCCCc
Confidence 356667777788864
No 136
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=95.49 E-value=0.15 Score=53.20 Aligned_cols=163 Identities=20% Similarity=0.293 Sum_probs=100.1
Q ss_pred CCcccccccCCCC--ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCCCcCCCCCCCCeEEEe
Q 005185 489 RLQPRYYSISSSP--RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIG 566 (710)
Q Consensus 489 ~l~pR~YSIsSsp--~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~lp~~~~~piImIa 566 (710)
+...|.|||.+-. .-++.|-+|. ....|.+|+|-.+.++|+ .+.|.++.+.+..+.. ..-++|||
T Consensus 84 r~~~R~YTiR~~d~~~~e~~vDfVl------H~~~gpas~WA~~a~~GD------~l~i~GP~g~~~p~~~-~~~~lLig 150 (265)
T COG2375 84 RPPQRTYTIRAVDAAAGELDVDFVL------HGEGGPASRWARTAQPGD------TLTIMGPRGSLVPPEA-ADWYLLIG 150 (265)
T ss_pred CCCcccceeeeecccccEEEEEEEE------cCCCCcchhhHhhCCCCC------EEEEeCCCCCCCCCCC-cceEEEec
Confidence 4458999997654 4455555542 115799999999999987 5778888888766544 44589999
Q ss_pred cCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhcc
Q 005185 567 PGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEK 646 (710)
Q Consensus 567 ~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~ 646 (710)
==|++--+.++|++.... .+...|.-.++.. |. .++. .....++.... |++.. + ...+.+.
T Consensus 151 DetAlPAIa~iLE~lp~~-------~~~~a~lev~d~a-d~---~~l~----~~~~l~~~Wl~-r~~~~--~-~~ll~~a 211 (265)
T COG2375 151 DETALPAIARILETLPAD-------TPAEAFLEVDDAA-DR---DELP----SPDDLELEWLA-RDDAP--T-EQLLAAA 211 (265)
T ss_pred cccchHHHHHHHHhCCCC-------CceEEEEEeCChH-Hh---hccC----CCCceeEEEec-CCCcc--c-hHHHHHH
Confidence 999998888888876542 3446677777665 43 2221 12222444443 33211 1 1112111
Q ss_pred hhHHhhc-cc-CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHH
Q 005185 647 SSDIWNM-LS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSK 691 (710)
Q Consensus 647 ~~~v~~~-l~-~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~ 691 (710)
+.+. +. .+.++||.|- ..|++.+++.|. .+.|++...
T Consensus 212 ---~~~~~~P~~~~~vwiagE-~~~v~~~Rk~L~----~e~g~dk~~ 250 (265)
T COG2375 212 ---LAQAALPAGDYYVWIAGE-ASAVKAIRKFLR----NERGFDKSR 250 (265)
T ss_pred ---HhcccCCCCceEEEEecc-HHHHHHHHHHHh----hhcCCCHHH
Confidence 1122 22 2479999998 678777766665 455666554
No 137
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=94.63 E-value=0.34 Score=48.15 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=83.3
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecC--CCCCCc---------chHHHHhhcCCCeEEEEecCCC
Q 005185 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDI--DDYADE---------EDEYEEKLKKENIVFFFLATYG 171 (710)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl--~~~~~~---------~~~~~~~l~~~~~~if~~sTyG 171 (710)
++|++++||.. -.+..+|+.+++.+...+. ..+...|+ --|+.+ -..+.+.+...+.+||++|.|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~-~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY- 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGE-VEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY- 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCc-eEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc-
Confidence 57999999965 4567788888888876542 22222221 111111 112335677889999999999
Q ss_pred CCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 172 DGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 172 ~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
+|..|.-.+..++|+... .+.++..++++.|.... +.-.+...+...|..+|+..+-
T Consensus 79 n~s~pg~lKnaiD~l~~~-----~~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~ 135 (184)
T COG0431 79 NGSYPGALKNAIDWLSRE-----ALGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIP 135 (184)
T ss_pred CCCCCHHHHHHHHhCCHh-----HhCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceecc
Confidence 999999999999999753 58899988888654333 2333456777778888887653
No 138
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=94.44 E-value=0.92 Score=44.83 Aligned_cols=152 Identities=11% Similarity=0.113 Sum_probs=95.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCC----cchHHHHhhcCCCeEEEEecCCCCCCCCchHHHH
Q 005185 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD----EEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (710)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~----~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (710)
|+|++|........+-+.|.+.+... ..|++.||.+..+ |-....+.+...+.+||..|-| ...+|.-.+.+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~---~~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~w 77 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLW 77 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc---CCeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHH
Confidence 88999998887666777787777643 2478888755322 1112235588899999999999 99999998888
Q ss_pred HHHHHhhc----CCCCCcCCceE-EEEeccCCc--hH-----HHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHH
Q 005185 183 YKWFTEQK----EGGEWLQKLKY-GVFGLGNRQ--YE-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFS 250 (710)
Q Consensus 183 ~~~L~~~~----~~~~~l~~~~~-aVFGlGds~--Y~-----~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~ 250 (710)
++..-... ..+..|+|+++ .++-.|... |. .+.....-+...+.-+|.+-+-|..........+++++
T Consensus 78 iD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~~~~~~~~ 157 (176)
T PRK00871 78 IDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFICDDETLE 157 (176)
T ss_pred HHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeeccCCHHHHH
Confidence 87664321 12345889976 455556542 31 22223344555556678887766554333333355555
Q ss_pred HHHHHHHHHHHh
Q 005185 251 AWRELVWPELDN 262 (710)
Q Consensus 251 ~W~~~l~~~L~~ 262 (710)
+..++..+.|.+
T Consensus 158 ~~~~~~~~~L~~ 169 (176)
T PRK00871 158 GQARHYKQRLLE 169 (176)
T ss_pred HHHHHHHHHHHh
Confidence 555555444443
No 139
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=93.32 E-value=0.35 Score=46.54 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=71.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCC-----------cchHH----HHhhcCCCeEEEEec
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----------EEDEY----EEKLKKENIVFFFLA 168 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----------~~~~~----~~~l~~~~~~if~~s 168 (710)
+.+|.|+|-|.+|.-+.+|+.+.+.+.+.++. ..+..+.+.-. -+.+| .+.|.++|..+|+.|
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~a~ge--A~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~P 78 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIESAGGE--ATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFP 78 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhccCCe--eEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeeccc
Confidence 35789999999999999999999988876643 33433322110 00011 356788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccC
Q 005185 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGN 208 (710)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGd 208 (710)
|- -|.+|..++.||+.-... -.+..|.|+..++|=.+-
T Consensus 79 TR-fG~~~AQ~kaF~D~TggL-W~~~aL~GK~AG~F~Stg 116 (203)
T KOG3135|consen 79 TR-FGNMPAQWKAFWDSTGGL-WAKGALAGKPAGIFVSTG 116 (203)
T ss_pred cc-ccCcHHHHHHHHhccCch-hhhccccCCceeEEEecc
Confidence 99 999999999999952211 122359999999996544
No 140
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=91.77 E-value=3.1 Score=41.58 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=96.7
Q ss_pred ceEEEEEeCCC-chHHHHHHHHHHHHHhhcCCce-----eEEe----cCCC--CCCcchHHHHhhcCCCeEEEEecCCCC
Q 005185 105 QKVTIFFGTQT-GTAEGFAKALADEARARYDKAI-----FKVV----DIDD--YADEEDEYEEKLKKENIVFFFLATYGD 172 (710)
Q Consensus 105 ~~v~I~YgSqt-Gtae~~A~~la~~l~~~~~~~~-----v~v~----dl~~--~~~~~~~~~~~l~~~~~~if~~sTyG~ 172 (710)
|+|+|+||-.- ..+-..++.+.+.+.+.+.... .... ...| ...|-..-.+++...+.+||.-|-| -
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw-W 79 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW-W 79 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch-h
Confidence 58999999985 3333444444444444332110 0111 1122 3333222346788899999999999 8
Q ss_pred CCCCchHHHHHHHHHhhc----CCC----CCcCCceEEEEeccCCchHHHHHHHHH---------HHHHHHHcCCccccc
Q 005185 173 GEPTDNAARFYKWFTEQK----EGG----EWLQKLKYGVFGLGNRQYEHFNKIAKV---------VDEILANQGAKRLVP 235 (710)
Q Consensus 173 G~~pdna~~F~~~L~~~~----~~~----~~l~~~~~aVFGlGds~Y~~f~~~~k~---------ld~~L~~lGa~~l~~ 235 (710)
+..|.-.+.+++..-... ..+ ..|.|+++-++..-+..-+.|...+.. +.-.+.-.|...+-+
T Consensus 80 ~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~ 159 (189)
T COG2249 80 YSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWLPP 159 (189)
T ss_pred ccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccccc
Confidence 888998888888765421 112 469999988887655544444333332 223445567766666
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHHHhh
Q 005185 236 VGLGDDDQCIEDDFSAWRELVWPELDNL 263 (710)
Q Consensus 236 ~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (710)
...++.+...++...+|.+++-..|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 160 FTFYGADVIDDETRAAYLERYRAHLKEI 187 (189)
T ss_pred eeEeecccCCHHHHHHHHHHHHHHHHhh
Confidence 6666666667889999999887776654
No 141
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=89.12 E-value=0.43 Score=52.48 Aligned_cols=186 Identities=10% Similarity=-0.030 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCcccCCCCccccccCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCc
Q 005185 57 ILTTSIAVLIGCVVVFILRRSSSSKPKKVEPLKPLVVKEPEVEVDDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKA 136 (710)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~ 136 (710)
+.+.+..+++-.++++.+++....+ .....+.. ...+++.-..-.-++|.=+=+.|-+..||+.|++.+.+.+...
T Consensus 314 wk~d~pevil~gal~lhy~mikqmk--gvpgvk~E--r~~ea~evrhcalslVgepi~yp~in~f~k~lH~k~issflvt 389 (601)
T KOG1160|consen 314 WKMDAPEVILKGALYLHYNMIKQMK--GVPGVKAE--RFEEAEEVRHCALSLVGEPIMYPEINPFAKLLHQKLISSFLVT 389 (601)
T ss_pred EecCCchhhhHHHHHHHHHHHHHhh--cCCCcCHH--HHHhhhhhhhheeeeecccccchhhhHHHHHHHhccchHHhcc
Confidence 3345567777778888887654211 11000000 0011111122345677788899999999999999887665211
Q ss_pred ee----EEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcC---CCCCcCCceEEEEeccCC
Q 005185 137 IF----KVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE---GGEWLQKLKYGVFGLGNR 209 (710)
Q Consensus 137 ~v----~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~---~~~~l~~~~~aVFGlGds 209 (710)
+. .+.|+... ..-+-.+++.+-|.--|.+.+--++||+|+.+... .+....-.|+++.|.||+
T Consensus 390 naq~pe~~rnvk~v----------tqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~lk~K~qrtvyRlTlVkg~n~ 459 (601)
T KOG1160|consen 390 NAQFPEDIRNVKPV----------TQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKALKKKQQRTVYRLTLVKGWNS 459 (601)
T ss_pred cccChHHHhchhhh----------heeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHHHHHhhcceEEEEEEeccccc
Confidence 10 11111111 11234566677777788899999999999976321 223445568999999999
Q ss_pred ch--HHHHHHHHHHHHHHHHcCCcccccccc---cCCCCCchhhHHHHHHHH
Q 005185 210 QY--EHFNKIAKVVDEILANQGAKRLVPVGL---GDDDQCIEDDFSAWRELV 256 (710)
Q Consensus 210 ~Y--~~f~~~~k~ld~~L~~lGa~~l~~~g~---gD~~~~~e~~f~~W~~~l 256 (710)
.= ..||.+++-+-++++-+||+-..+.-. -+.+....++|-++...|
T Consensus 460 dd~~Ayfnlv~rglp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~eL 511 (601)
T KOG1160|consen 460 DDLPAYFNLVSRGLPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVFEL 511 (601)
T ss_pred cccHHHHHHHhccCCceEEEeceeEecccccCcccccCccHHHHHHHHHHHH
Confidence 84 789999999999999999986544321 122333455555555554
No 142
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=88.41 E-value=0.55 Score=49.52 Aligned_cols=42 Identities=48% Similarity=0.850 Sum_probs=37.1
Q ss_pred EEeeecccCCCCCCcEEEEEEEecC-CCCccCCCCeeEEccCC
Q 005185 320 VAVRKELHTPSSDRSCTHLEFDIAG-TGLTYETGDHVGVYCEN 361 (710)
Q Consensus 320 v~~~~~L~~~~~~r~~~hle~di~~-~~~~Y~~GD~l~V~p~N 361 (710)
+++++.+++|+|.++++|++|++++ ..+.|+||.++.|.+.+
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 44 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC
Confidence 4568889999999999999999885 67899999999998764
No 143
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=88.35 E-value=0.19 Score=55.57 Aligned_cols=62 Identities=32% Similarity=0.545 Sum_probs=53.9
Q ss_pred EEeccCCch-H-----HHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHHHHHHHHhhh
Q 005185 203 VFGLGNRQY-E-----HFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPELDNLL 264 (710)
Q Consensus 203 VFGlGds~Y-~-----~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~~~ 264 (710)
|||+||+.| + .|++-.|.+..+|.+++|..++++|+|+|++ +....+..|--.||++|..-.
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~ 70 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGI 70 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCC
Confidence 699999998 3 5899999999999999999999999999854 466778899999999987544
No 144
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=82.38 E-value=39 Score=31.87 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=80.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (710)
++-.|+-++--|-.-.+...+...+-+.. .++++++-..-+ .+++.+...+++.=++++|.. .+..-..+..+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~---G~eVi~LG~~vp-~e~i~~~a~~~~~d~V~lS~~-~~~~~~~~~~~~~ 76 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEA---GFEVINLGVMTS-QEEFIDAAIETDADAILVSSL-YGHGEIDCRGLRE 76 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHC---CCEEEECCCCCC-HHHHHHHHHHcCCCEEEEcCc-cccCHHHHHHHHH
Confidence 44567888888888888877766665432 268888865333 234555566666656666655 4555566777777
Q ss_pred HHHhhcCCCCCcCCceEEEEec---cCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHH
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGL---GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGl---Gds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~ 257 (710)
.|.+. .+.+.++.|=|- ++..+ ....+.|+++|...+++.+. ..+++..|..+.|
T Consensus 77 ~L~~~-----~~~~~~i~vGG~~~~~~~~~-------~~~~~~l~~~G~~~vf~~~~------~~~~i~~~l~~~~ 134 (137)
T PRK02261 77 KCIEA-----GLGDILLYVGGNLVVGKHDF-------EEVEKKFKEMGFDRVFPPGT------DPEEAIDDLKKDL 134 (137)
T ss_pred HHHhc-----CCCCCeEEEECCCCCCccCh-------HHHHHHHHHcCCCEEECcCC------CHHHHHHHHHHHh
Confidence 77653 244565555552 12222 44557888999998987653 2456667766544
No 145
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=69.67 E-value=99 Score=29.16 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=80.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHH
Q 005185 108 TIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 187 (710)
Q Consensus 108 ~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~ 187 (710)
.|+-|+--|..-...+.+-..+-+.. .++|+|+--.- ..+++.+...+++.-++++|+. .|.--..+.++.+.|.
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~~---GfeVi~LG~~v-~~e~~v~aa~~~~adiVglS~l-~~~~~~~~~~~~~~l~ 77 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTNA---GFNVVNLGVLS-PQEEFIKAAIETKADAILVSSL-YGHGEIDCKGLRQKCD 77 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHHC---CCEEEECCCCC-CHHHHHHHHHHcCCCEEEEecc-cccCHHHHHHHHHHHH
Confidence 45668888887777776655554332 26889986533 3355667777788878888888 6777777888888887
Q ss_pred hhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHH
Q 005185 188 EQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWREL 255 (710)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~ 255 (710)
+.. +.+.. -++| |.-..+.=. ...+.++|+++|..++++.+.. .+++..|..+
T Consensus 78 ~~g-----l~~~~-vivG-G~~vi~~~d--~~~~~~~l~~~Gv~~vF~pgt~------~~~iv~~l~~ 130 (134)
T TIGR01501 78 EAG-----LEGIL-LYVG-GNLVVGKQD--FPDVEKRFKEMGFDRVFAPGTP------PEVVIADLKK 130 (134)
T ss_pred HCC-----CCCCE-EEec-CCcCcChhh--hHHHHHHHHHcCCCEEECcCCC------HHHHHHHHHH
Confidence 642 44544 3454 432221100 1234568899999999877632 4566666544
No 146
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=67.96 E-value=10 Score=40.70 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=43.0
Q ss_pred ccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCC
Q 005185 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 361 (710)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N 361 (710)
|....|+.++|+..+.++.|.+..++++|.|+.+ ..+.|+||.++.|.++.
T Consensus 19 ~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~~ 69 (307)
T PLN03116 19 YKPKAPYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPG 69 (307)
T ss_pred ccCCCCEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCCC
Confidence 4466788999999999987777778999999976 47899999999998753
No 147
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=67.33 E-value=11 Score=39.88 Aligned_cols=50 Identities=24% Similarity=0.460 Sum_probs=40.9
Q ss_pred ccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccC
Q 005185 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCE 360 (710)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~ 360 (710)
|-...|+.+.|+..+.++.+.+...++++.|+. +..+.|+||.++.|.++
T Consensus 3 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~pGQ~v~l~~~ 52 (286)
T cd06208 3 YKPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDH-GGKLPYLEGQSIGIIPP 52 (286)
T ss_pred CCCCCCeEEEEEeceeccCCCCCcceEEEEEeC-CCcccccCCceEEEECC
Confidence 334567789999999998766667899999997 45789999999999865
No 148
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=66.56 E-value=72 Score=29.87 Aligned_cols=113 Identities=16% Similarity=0.228 Sum_probs=73.3
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHh
Q 005185 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (710)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~ 188 (710)
|+-|+--|..-...+.|-..+-+.. .++|+|+--.- ..+++.+...+++.-+++.|+. .|.--..+.+..+.|.+
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~~~---GfeVidLG~~v-~~e~~v~aa~~~~adiVglS~L-~t~~~~~~~~~~~~l~~ 76 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTEA---GFNVVNLGVLS-PQEEFIDAAIETDADAILVSSL-YGHGEIDCKGLREKCDE 76 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHHHC---CCEEEECCCCC-CHHHHHHHHHHcCCCEEEEecc-ccCCHHHHHHHHHHHHH
Confidence 5667777777777777666554432 36899986533 3355666667778778888888 77777888888888876
Q ss_pred hcCCCCCcCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCccccccc
Q 005185 189 QKEGGEWLQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVG 237 (710)
Q Consensus 189 ~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~l~~~g 237 (710)
. .+.. +-|+.=|.-.- +.+ ....++|+++|..++++.|
T Consensus 77 ~-----gl~~--v~vivGG~~~i~~~d~----~~~~~~L~~~Gv~~vf~pg 116 (128)
T cd02072 77 A-----GLKD--ILLYVGGNLVVGKQDF----EDVEKRFKEMGFDRVFAPG 116 (128)
T ss_pred C-----CCCC--CeEEEECCCCCChhhh----HHHHHHHHHcCCCEEECcC
Confidence 4 2434 33443343211 111 2244678999999999876
No 149
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=59.75 E-value=2e+02 Score=29.07 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=86.1
Q ss_pred CceEEEEEeCCCc---hHHHHHHHHHHHHHhhcCCceeEEecCCCCCC---------------------c-------chH
Q 005185 104 KQKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------E-------EDE 152 (710)
Q Consensus 104 ~~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------------~-------~~~ 152 (710)
|++|+++=+|-.| -+..+++.+.+..++..+...+...||..-.. + -++
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 5678888888774 35567777777777777666666666633210 0 123
Q ss_pred HHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhc--------CCCCCcCCceEEEEeccCCchHH----HHHHHHH
Q 005185 153 YEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK--------EGGEWLQKLKYGVFGLGNRQYEH----FNKIAKV 220 (710)
Q Consensus 153 ~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~--------~~~~~l~~~~~aVFGlGds~Y~~----f~~~~k~ 220 (710)
|.+++...+.+||..|-| +-..|..-+.+++.+.... .+...+.+++..++..=---|.+ ++-...-
T Consensus 81 l~~ef~aAD~vVi~~PM~-Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~Y 159 (202)
T COG1182 81 LLEEFLAADKVVIAAPMY-NFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPY 159 (202)
T ss_pred HHHHHHhcCeEEEEeccc-ccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHH
Confidence 556778889999999999 9999999888888886421 13346788888888532222433 5666667
Q ss_pred HHHHHHHcCCcc
Q 005185 221 VDEILANQGAKR 232 (710)
Q Consensus 221 ld~~L~~lGa~~ 232 (710)
+...|.=+|.+-
T Consensus 160 Lr~ilgF~Gitd 171 (202)
T COG1182 160 LRTILGFLGITD 171 (202)
T ss_pred HHHHhhhcCCCc
Confidence 777777778763
No 150
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=55.57 E-value=36 Score=29.05 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=25.7
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARY 133 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (710)
++++++.++-.|++..++.+|.+.+.+.+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~ 29 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENG 29 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCC
Confidence 46899999999999999999999997654
No 151
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=52.98 E-value=93 Score=29.14 Aligned_cols=112 Identities=12% Similarity=0.021 Sum_probs=72.0
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHH
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~ 185 (710)
++.|+-|+.-|..-+..+.|...+-+.. .++|+|+.-+.. .+++.+...+++.=+++.|+. +|...+.+....+.
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~---GfeVi~lg~~~s-~e~~v~aa~e~~adii~iSsl-~~~~~~~~~~~~~~ 76 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADL---GFDVDVGPLFQT-PEEIARQAVEADVHVVGVSSL-AGGHLTLVPALRKE 76 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhC---CcEEEECCCCCC-HHHHHHHHHHcCCCEEEEcCc-hhhhHHHHHHHHHH
Confidence 3567778888877777777776665443 278898876543 345556666666656666666 67777788888888
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccc
Q 005185 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (710)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g 237 (710)
|++.. +.. +-|+.=|.-. +.-.+.|+++|..+++..|
T Consensus 77 L~~~g-----~~~--i~vivGG~~~--------~~~~~~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 77 LDKLG-----RPD--ILVVVGGVIP--------PQDFDELKEMGVAEIFGPG 113 (132)
T ss_pred HHhcC-----CCC--CEEEEeCCCC--------hHhHHHHHHCCCCEEECCC
Confidence 87642 222 3344434332 1222458899999998776
No 152
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=52.74 E-value=32 Score=33.21 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=36.3
Q ss_pred hhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCch
Q 005185 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY 211 (710)
Q Consensus 156 ~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y 211 (710)
++...+.++|++|-| ++.-|.--+.-++||...=.. ..+--+.|+=+|=|+++|
T Consensus 83 ki~~aD~ivFvtPqY-N~gypA~LKNAlD~lyheW~g-KPalivSyGGhGGg~c~~ 136 (199)
T KOG4530|consen 83 KILEADSIVFVTPQY-NFGYPAPLKNALDWLYHEWAG-KPALIVSYGGHGGGRCQY 136 (199)
T ss_pred HHhhcceEEEecccc-cCCCchHHHHHHHHhhhhhcC-CceEEEEecCCCCchHHH
Confidence 456678999999999 777787777788888753111 122234566566666666
No 153
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=49.66 E-value=44 Score=28.33 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=29.5
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCC
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD 145 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~ 145 (710)
+++|+.++-.||+..++.+|.+.+.+.+....+...++++
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~ 40 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGS 40 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEecccc
Confidence 4789999999999999999999997654322334445544
No 154
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=48.17 E-value=2e+02 Score=25.85 Aligned_cols=109 Identities=17% Similarity=0.099 Sum_probs=63.7
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHh
Q 005185 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE 188 (710)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~ 188 (710)
|+.++--|..-.+...+...+-+.. .++++++.... ..+++.+.+.+.+.-+++.|++ .+....++.++.+.+++
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~---G~~V~~lg~~~-~~~~l~~~~~~~~pdvV~iS~~-~~~~~~~~~~~i~~l~~ 76 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDA---GFEVIDLGVDV-PPEEIVEAAKEEDADAIGLSGL-LTTHMTLMKEVIEELKE 76 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHC---CCEEEECCCCC-CHHHHHHHHHHcCCCEEEEecc-ccccHHHHHHHHHHHHH
Confidence 5666667777777766666555432 25777776443 3334445555555444444544 55566777888888876
Q ss_pred hcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccc
Q 005185 189 QKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (710)
Q Consensus 189 ~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g 237 (710)
.. ..+.++.|=|..-+.. . +.++++|+..+++-+
T Consensus 77 ~~-----~~~~~i~vGG~~~~~~------~----~~~~~~G~D~~~~~~ 110 (119)
T cd02067 77 AG-----LDDIPVLVGGAIVTRD------F----KFLKEIGVDAYFGPA 110 (119)
T ss_pred cC-----CCCCeEEEECCCCChh------H----HHHHHcCCeEEECCH
Confidence 31 1355666656332211 1 477889998887644
No 155
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=45.35 E-value=37 Score=29.79 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=26.9
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcC
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYD 134 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~ 134 (710)
++|+++.||-.||+.-++.++.+.+.+++.
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi 32 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNI 32 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCC
Confidence 379999999999999999999999988763
No 156
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=43.34 E-value=3.3e+02 Score=30.88 Aligned_cols=129 Identities=19% Similarity=0.248 Sum_probs=74.7
Q ss_pred eEEEEEeCCC-------chHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHH---HHhhc--CCCeEEEEecCCCCC
Q 005185 106 KVTIFFGTQT-------GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY---EEKLK--KENIVFFFLATYGDG 173 (710)
Q Consensus 106 ~v~I~YgSqt-------Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~---~~~l~--~~~~~if~~sTyG~G 173 (710)
+|.++-+|+. ..+++.++++.+.|++.+ +++++......+.++. .+.+. +-+.+|+.++|||.+
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~ 77 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNELP----VEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPA 77 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhcCC----ceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccH
Confidence 4667777776 246666667777665432 4666555443121111 22333 357889999999653
Q ss_pred CCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCC--------chHHHHHHHHHHHHHHHHcCCcccccccccCCC-CC
Q 005185 174 EPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNR--------QYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD-QC 244 (710)
Q Consensus 174 ~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds--------~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~-~~ 244 (710)
.-....+.. + ++.+.+++..+. .+..+|+. ..+-..|.++|-+.-+-. |+.. ..
T Consensus 78 ------~~~~~~~~~-------~-~~Pvll~a~~~~~~~~~~~~~~~s~~g~-~~~~~~l~r~gi~~~~v~--g~~~d~~ 140 (452)
T cd00578 78 ------KMWIAGLSE-------L-RKPVLLLATQFNREIPDFMNLNQSACGL-REFGNILARLGIPFKVVY--GHWKDED 140 (452)
T ss_pred ------HHHHHHHHh-------c-CCCEEEEeCCCCCCCCchhhhhcchhhh-HHHHHHHHHcCCceeEEE--CCCCCHH
Confidence 222233332 2 577888887764 24455543 667788899998754333 4432 33
Q ss_pred chhhHHHHHHH
Q 005185 245 IEDDFSAWREL 255 (710)
Q Consensus 245 ~e~~f~~W~~~ 255 (710)
..+.+..|..-
T Consensus 141 ~~~~i~~~~ra 151 (452)
T cd00578 141 VLRKIESWARA 151 (452)
T ss_pred HHHHHHHHHHH
Confidence 55678888763
No 157
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=42.56 E-value=20 Score=34.90 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=40.7
Q ss_pred cCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHH
Q 005185 196 LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (710)
Q Consensus 196 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W 252 (710)
+...+++|+=.||+..+.++..+..+..+|++.|++...-....|+...+.+.+++|
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~ 58 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAW 58 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHH
Confidence 456899999999999887888899999999999997543223334333344444444
No 158
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=42.22 E-value=14 Score=33.76 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=26.6
Q ss_pred CCcccccccCCCC--ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCCC
Q 005185 489 RLQPRYYSISSSP--RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF 552 (710)
Q Consensus 489 ~l~pR~YSIsSsp--~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F 552 (710)
+...|.|||.+-. .-+++|-++.- -..|.+|.|..+..+|+ .+-|..+.+.|
T Consensus 64 ~p~~R~YTvR~~d~~~~~l~iDfv~H------g~~Gpas~WA~~A~pGd------~v~v~gP~g~~ 117 (117)
T PF08021_consen 64 RPVMRTYTVRRFDPETGELDIDFVLH------GDEGPASRWARSARPGD------RVGVTGPRGSF 117 (117)
T ss_dssp --EEEEEE--EEETT--EEEEEEE--------SS--HHHHHHHH--TT-------EEEEEEEE---
T ss_pred CCCCCCcCEeeEcCCCCEEEEEEEEC------CCCCchHHHHhhCCCCC------EEEEeCCCCCC
Confidence 4467999998764 33445544421 12389999999999987 57788888776
No 159
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=38.96 E-value=2.4e+02 Score=31.75 Aligned_cols=98 Identities=23% Similarity=0.241 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCC
Q 005185 116 GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEW 195 (710)
Q Consensus 116 Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~ 195 (710)
.++++||+.|+++|++.+ .| .++++||.| -.+....-..+.+++
T Consensus 319 ~~a~~~g~eIa~~Lk~dg------------VD---------------AvILtstCg--tCtrcga~m~keiE~------- 362 (431)
T TIGR01917 319 ANSKQFAKEFSKELLAAG------------VD---------------AVILTSTUG--TCTRCGATMVKEIER------- 362 (431)
T ss_pred HHHHHHHHHHHHHHHHcC------------CC---------------EEEEcCCCC--cchhHHHHHHHHHHH-------
Confidence 346778888888877643 12 578889984 467777778888875
Q ss_pred cCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc-----ccccCCCCCchhhHHHHHHHHHHHHHhhh
Q 005185 196 LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP-----VGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (710)
Q Consensus 196 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~-----~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (710)
.|.....+. .+-..-+..|+.|++| .-+||-....++...-=+.-+-.+|..+.
T Consensus 363 -~GIPvV~i~--------------~~~pI~~~vGanRiv~~~~i~~PlGnp~l~~~~e~~~rr~~v~~AL~aL~ 421 (431)
T TIGR01917 363 -AGIPVVHIC--------------TVTPIALTVGANRIIPAIAIPHPLGDPALDAAEEKALRRKIVEKALKALE 421 (431)
T ss_pred -cCCCEEEEe--------------echhHHHhcCCCceecCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhc
Confidence 356666665 1223345679999987 33566555555544433444556666543
No 160
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=38.86 E-value=78 Score=29.75 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=38.5
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCC---CC-cchH-HHHhhcCCCeEEEEec
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY---AD-EEDE-YEEKLKKENIVFFFLA 168 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~---~~-~~~~-~~~~l~~~~~~if~~s 168 (710)
++|.|.|...+-.=++....|++.|++.++ ..| ++|+-+- .. +-.. ....+.+.+.||+++|
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g-~~V-~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCG-IDV-ILDQWELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccC-Cce-eecHHhhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 479999999777777889999999988722 222 2333221 11 1111 2345677777777776
No 161
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.77 E-value=44 Score=27.14 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHH-HHHHHhhhhcCC
Q 005185 55 VMILTTSIAVLIG-CVVVFILRRSSS 79 (710)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 79 (710)
+++.+.++.+++| .++|.+|++.--
T Consensus 18 lvV~g~ll~flvGnyvlY~Yaqk~lp 43 (69)
T PF04689_consen 18 LVVAGLLLVFLVGNYVLYVYAQKTLP 43 (69)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3455666667777 777888776654
No 162
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=37.46 E-value=2.9e+02 Score=31.09 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=62.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCC-cchHHHHhhcCCCeEEEEecCCCCCCCCchHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD-EEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (710)
..-+.|.|||.++++++.++.+.+ ++ ..+.++++..+.+ +.+.+.+.+.+.+.++++=-++-.|..-.-..++
T Consensus 268 ad~~iV~~Gs~~~~a~ea~~~L~~----~G--~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev 341 (407)
T PRK09622 268 AEVAIVALGTTYESAIVAAKEMRK----EG--IKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEV 341 (407)
T ss_pred CCEEEEEEChhHHHHHHHHHHHHh----CC--CCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHH
Confidence 456888899999988888776643 34 3356666655433 3333445566777777776666555544455555
Q ss_pred HHHHHhhcCCCCCcCCceE---EEEeccCCch--HHHHHHHHHHHH
Q 005185 183 YKWFTEQKEGGEWLQKLKY---GVFGLGNRQY--EHFNKIAKVVDE 223 (710)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~---aVFGlGds~Y--~~f~~~~k~ld~ 223 (710)
...|..... +.... .++|+|.+.. +..-++.+++.+
T Consensus 342 ~~al~~~~~-----~~~~~v~~~~~g~gG~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 342 TSAVYQTQG-----TKHPVVSNYIYGLGGRDMTIAHLCEIFEELNE 382 (407)
T ss_pred HHHHhccCc-----CCCceEeeeEECCCCCCCCHHHHHHHHHHHHh
Confidence 555543110 01233 6778877665 445444444443
No 163
>PRK05907 hypothetical protein; Provisional
Probab=35.68 E-value=3.6e+02 Score=29.14 Aligned_cols=126 Identities=12% Similarity=0.091 Sum_probs=69.0
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHh------hcCCCeEEEEecCCCCCCCC-ch
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEK------LKKENIVFFFLATYGDGEPT-DN 178 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~------l~~~~~~if~~sTyG~G~~p-dn 178 (710)
.++++||+++ +.+.++|.+.+-... ...+|.++++.+. ..+. +.+..++++--+ +.+. .+
T Consensus 19 ~~y~~~g~~~---~~~~~~l~~~~~~~~----~~~fdg~~~~~~~--ii~~aetlPfFaerRlV~v~~~----~~~~~~~ 85 (311)
T PRK05907 19 PAVIVIGSSS---EEDKDIFIELLVSGR----KSEFDGQGLLQQE--LLSWTEHFGLFASQETIGIYQA----EKMSSST 85 (311)
T ss_pred ceEEEecCCc---HHHHHHHHHHhCCCc----cceecCCCCCHHH--HHHHHhcCCcccCeEEEEEecc----ccccccc
Confidence 7999999999 777777766653221 1346777766422 2221 344455544322 2333 35
Q ss_pred HHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHH
Q 005185 179 AARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (710)
Q Consensus 179 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (710)
.+.+.+++.+. ......-||.. .+++|.+.-|++.+ |+. + +. .++...-.+.++..|..+...
T Consensus 86 ~~~L~~Yl~np------~~~~~liv~~~---~~d~~kkl~K~i~k-----~~~-v-~~-~~e~~~l~e~~L~~Wi~~~~~ 148 (311)
T PRK05907 86 QEFLIRYARNP------NPHLTLFLFTT---KQECFSSLSKKLSS-----ALC-L-SL-FGEWFADRDKRIAQLLIQRAK 148 (311)
T ss_pred HHHHHHHHhCC------CCCeEEEEEEe---cccHHHHHHHHHhh-----cce-e-cc-ccccCCCCHHHHHHHHHHHHH
Confidence 77888888753 22234444654 27777765555543 221 1 00 001122337889999988766
Q ss_pred HHH
Q 005185 259 ELD 261 (710)
Q Consensus 259 ~L~ 261 (710)
...
T Consensus 149 ~~g 151 (311)
T PRK05907 149 ELG 151 (311)
T ss_pred HcC
Confidence 554
No 164
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=34.78 E-value=1.6e+02 Score=35.11 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=30.3
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecC
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDI 143 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl 143 (710)
.++++|+.+|--||+..+...|.+.+++.+.. .+++.+.
T Consensus 378 ~kkilvVC~sG~GsS~m~~~~l~~~l~~~~i~-~i~i~~~ 416 (639)
T PRK15083 378 VRKIIVACDAGMGSSAMGAGVLRKKVQDAGLS-QISVTNS 416 (639)
T ss_pred cCEEEEECCCCccHHHHHHHHHHHHHHHcCCC-eeEEEEe
Confidence 57899999999999999999999999876532 2444443
No 165
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=34.27 E-value=61 Score=28.50 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=25.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcC
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYD 134 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~ 134 (710)
+++|+++.|+-.+|+ -+++++.+.+++++.
T Consensus 3 ~~~ILl~C~~G~sSS-~l~~k~~~~~~~~gi 32 (95)
T TIGR00853 3 ETNILLLCAAGMSTS-LLVNKMNKAAEEYGV 32 (95)
T ss_pred ccEEEEECCCchhHH-HHHHHHHHHHHHCCC
Confidence 578999999988876 688999999988763
No 166
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=34.02 E-value=67 Score=26.18 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=23.7
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARARY 133 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (710)
+++++.++-.|++..++.+|.+.+.+.+
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~ 28 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELG 28 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCC
Confidence 4677888888999999999999998765
No 167
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=33.60 E-value=2.1e+02 Score=28.84 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=37.9
Q ss_pred HhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 155 EKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 155 ~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
..+..++.+||.+++ .++.|.+++.+. ....+.+.++.+.| ....+.|++.|-+..
T Consensus 48 ~~~~~~d~iiftS~~--------av~~~~~~~~~~--~~~~~~~~~~~avG-------------~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 48 LAALGADWVIFTSKN--------AVEFLLSALKKK--KLKWPKNKKYAAIG-------------EKTALALKKLGGKVV 103 (249)
T ss_pred hhCCCCCEEEEECHH--------HHHHHHHHHHhc--CcCCCCCCEEEEEC-------------HHHHHHHHHcCCCcc
Confidence 345677877776644 377788888721 22357788888887 566677888887653
No 168
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=32.57 E-value=69 Score=31.34 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=27.9
Q ss_pred CCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 192 GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 192 ~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
....+.|++++|+|+| ..++.+.++|+.+|++.++
T Consensus 30 ~~~~l~g~tvgIiG~G--------~IG~~vA~~l~~fG~~V~~ 64 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYG--------RIGRAVARRLKAFGMRVIG 64 (178)
T ss_dssp TBS-STTSEEEEESTS--------HHHHHHHHHHHHTT-EEEE
T ss_pred CccccCCCEEEEEEEc--------CCcCeEeeeeecCCceeEE
Confidence 3446999999999977 6899999999999997553
No 169
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=32.54 E-value=43 Score=29.20 Aligned_cols=18 Identities=17% Similarity=0.253 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 005185 59 TTSIAVLIGCVVVFILRR 76 (710)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~ 76 (710)
..+++++++|++|++|||
T Consensus 74 ~~~~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 74 FFAFLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 356778888888999886
No 170
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=32.41 E-value=1.5e+02 Score=34.93 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=35.2
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCC
Q 005185 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA 147 (710)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~ 147 (710)
+++||++..||--||+-.++.++.+.|++++-...++-.|+.+..
T Consensus 505 k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~veV~~~~Vsev~ 549 (602)
T PRK09548 505 KPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIPIIMDSCAVNDYK 549 (602)
T ss_pred cccEEEEECCCCchHHHHHHHHHHHHHHHcCCCeEEEEechHhCc
Confidence 567899999999999999999999999988754344444555443
No 171
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=32.18 E-value=1.1e+02 Score=26.44 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=27.6
Q ss_pred EEEEeeecccCCCCCCcEEEEEEEecC--CCCccCCCCeeEEccC
Q 005185 318 SNVAVRKELHTPSSDRSCTHLEFDIAG--TGLTYETGDHVGVYCE 360 (710)
Q Consensus 318 a~v~~~~~L~~~~~~r~~~hle~di~~--~~~~Y~~GD~l~V~p~ 360 (710)
+.|+..++++. ++++++|.+++ ..+.|+||.|+.|.-.
T Consensus 2 ~~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 2 AKVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 56777777763 58889988874 2478999999999766
No 172
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=31.60 E-value=16 Score=32.67 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCChHHHHHHhcCCC-----cccccccCCCCc---eEEEEEEEEeeCCCCcccCCccchhhhccC
Q 005185 475 AKPPLGVFFAAIVPRL-----QPRYYSISSSPR---IHVTCALVYEKTPTGRVHKGLCSTWMKNSL 532 (710)
Q Consensus 475 ~~~p~~~~l~~i~p~l-----~pR~YSIsSsp~---i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~ 532 (710)
.+.-+||++-+.+|.+ +.+||||+|+|+ +.+.++ ..|-.|..|.+..
T Consensus 28 ~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~~~i~l~ik-----------~~g~~T~~L~~~~ 82 (105)
T PF08022_consen 28 FKWKPGQYVFLSFPSISKWFWQWHPFTIASSPEDNSITLIIK-----------ARGGWTKRLYEHL 82 (105)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCCCceEEEEEEcCcCcCcccccccEeeccCCCCEEEEEEE-----------eCCCchHHHHHHH
Confidence 3456788776555643 678999999983 333221 2466677776653
No 173
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=31.50 E-value=3.2e+02 Score=30.80 Aligned_cols=77 Identities=25% Similarity=0.224 Sum_probs=47.0
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc-----cc
Q 005185 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP-----VG 237 (710)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~-----~g 237 (710)
.++++||.| -.+....-..+.+++. |.....+. .+-..-+..||.|++| .-
T Consensus 339 AVILTstCg--tC~r~~a~m~keiE~~--------GiPvv~~~--------------~~~pis~tvGanrivp~~~ip~P 394 (431)
T TIGR01918 339 AVILTSTUG--TCTRCGATMVKEIERA--------GIPVVHMC--------------TVIPIALTVGANRIVPTIAIPHP 394 (431)
T ss_pred EEEEcCCCC--cchhHHHHHHHHHHHc--------CCCEEEEe--------------ecccHhhhcCccceecccCcCCC
Confidence 588889984 4677777788888753 45555554 1222334569999976 33
Q ss_pred ccCCCCCchhhHHHHHHHHHHHHHhh
Q 005185 238 LGDDDQCIEDDFSAWRELVWPELDNL 263 (710)
Q Consensus 238 ~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (710)
+||-..+.++...-=+..+-.+|..+
T Consensus 395 lGnp~l~~~~e~~~Rr~~v~~AL~aL 420 (431)
T TIGR01918 395 LGDPALSKAEEKKLRRKRVEKALKAL 420 (431)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 56666555555443344455566644
No 174
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.30 E-value=3.4e+02 Score=24.65 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=63.3
Q ss_pred EEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCe-EEEEecCCCCCCCCchHHHHHHHHH
Q 005185 109 IFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENI-VFFFLATYGDGEPTDNAARFYKWFT 187 (710)
Q Consensus 109 I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~-~if~~sTyG~G~~pdna~~F~~~L~ 187 (710)
|+.++--|---.+...+...+-+.. .++++++-...+. +++.+...+.+. +|++|++ ++.....+..+.+.|.
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~---G~~vi~lG~~vp~-e~~~~~a~~~~~d~V~iS~~--~~~~~~~~~~~~~~L~ 75 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDA---GFEVIYTGLRQTP-EEIVEAAIQEDVDVIGLSSL--SGGHMTLFPEVIELLR 75 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHC---CCEEEECCCCCCH-HHHHHHHHHcCCCEEEEccc--chhhHHHHHHHHHHHH
Confidence 4555666666666666666665443 2678888665432 234444444443 4555444 4566667777788777
Q ss_pred hhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccc
Q 005185 188 EQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 238 (710)
Q Consensus 188 ~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~ 238 (710)
+. .+.+..+.+=|.+ .+...++|.++|...++..+.
T Consensus 76 ~~-----~~~~i~i~~GG~~----------~~~~~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 76 EL-----GAGDILVVGGGII----------PPEDYELLKEMGVAEIFGPGT 111 (122)
T ss_pred hc-----CCCCCEEEEECCC----------CHHHHHHHHHCCCCEEECCCC
Confidence 63 1334444444421 134457888899988887664
No 175
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=30.12 E-value=91 Score=26.65 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=30.3
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCC
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDD 145 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~ 145 (710)
++|+++.||--||+..++.+|.+.+...+....+.-.++++
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~ 41 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDE 41 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhh
Confidence 47899999999999999999999998655332333334433
No 176
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=29.63 E-value=1.6e+02 Score=26.85 Aligned_cols=97 Identities=21% Similarity=0.350 Sum_probs=54.4
Q ss_pred CeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCC--Cccc
Q 005185 561 PIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP--TKEY 638 (710)
Q Consensus 561 piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~--~k~y 638 (710)
.++|+|=-|++--+.+++++.-.. .+...|+-..+.. |.. +|.. ....++..+ .|++. ...-
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp~~-------~~~~v~iev~~~~-d~~---~l~~----~~~~~v~wv-~r~~~~~~~~~ 66 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALPAD-------APGTVFIEVPDEA-DRQ---PLPA----PAGVEVTWV-PRDGPAAQGSA 66 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS-TT--------EEEEEEEESSGG-G--------------TEEEEEEE-E-SS--TT-HH
T ss_pred eEEEEeccccHHHHHHHHHhCCCC-------CeEEEEEEECChH-hcc---cCCC----CCCCEEEEE-eCCCCCchHHH
Confidence 478999999998899999987321 4677778777765 532 2222 223344444 44432 1111
Q ss_pred ccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005185 639 VQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 679 (710)
Q Consensus 639 Vq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~ 679 (710)
+.+.+... ..-..+.+++++|- ..|++.+++.|.+
T Consensus 67 l~~al~~~-----~~~~~~~~vW~AgE-~~~~r~lR~~l~~ 101 (119)
T PF04954_consen 67 LADALRDL-----PLPAGDGYVWVAGE-ASAVRALRRHLRE 101 (119)
T ss_dssp HHHHHTTS--------SS-EEEEEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHh-----hccCCCeEEEEEec-HHHHHHHHHHHHH
Confidence 22222221 01135789999998 7899999988874
No 177
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.05 E-value=1.9e+02 Score=26.78 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=42.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHH
Q 005185 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (710)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L 186 (710)
+.+-+|+..|+|+.+|.++.+... ..+..++..++.-.. ...+.+.+++|+++ . .|+-.+.+.+..+++
T Consensus 17 ~~~G~G~s~~~a~e~~~kl~e~~~-----i~~~~~~~~e~~hg~---~~~~~~~~~vi~is-~--~g~t~~~~~~~~~~~ 85 (153)
T cd05009 17 YVLGRGPNYGTALEGALKLKETSY-----IHAEAYSAGEFKHGP---IALVDEGTPVIFLA-P--EDRLEEKLESLIKEV 85 (153)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHh-----hcceeccHHHhccCh---hhhccCCCcEEEEe-c--CChhHHHHHHHHHHH
Confidence 445578889999999988877642 223444444443211 23355556655555 3 344445577788888
Q ss_pred Hh
Q 005185 187 TE 188 (710)
Q Consensus 187 ~~ 188 (710)
++
T Consensus 86 ~~ 87 (153)
T cd05009 86 KA 87 (153)
T ss_pred HH
Confidence 75
No 178
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=28.29 E-value=1.7e+02 Score=29.52 Aligned_cols=75 Identities=28% Similarity=0.353 Sum_probs=39.5
Q ss_pred eEEEEEeCCCc----hHHHHHHHHHHHHHhhcCCceeEEec-CCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHH
Q 005185 106 KVTIFFGTQTG----TAEGFAKALADEARARYDKAIFKVVD-IDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAA 180 (710)
Q Consensus 106 ~v~I~YgSqtG----tae~~A~~la~~l~~~~~~~~v~v~d-l~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~ 180 (710)
||+|++|.-+| ..+...+.|++.+++.. ...+.+.+ .+.+. .+.|..++++||..-. |+--+++..+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~-~~~v~~~~~~~~~~------~~~L~~~Dvvv~~~~~-~~~l~~~~~~ 72 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESE-GFEVTVTEDPDDLT------PENLKGYDVVVFYNTG-GDELTDEQRA 72 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTT-CEEEEECCSGGCTS------HHCHCT-SEEEEE-SS-CCGS-HHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCC-CEEEEEEeCcccCC------hhHhcCCCEEEEECCC-CCcCCHHHHH
Confidence 68899998433 22355666666666332 23344332 22222 2468899977666555 2222445577
Q ss_pred HHHHHHHh
Q 005185 181 RFYKWFTE 188 (710)
Q Consensus 181 ~F~~~L~~ 188 (710)
.|.+++++
T Consensus 73 al~~~v~~ 80 (217)
T PF06283_consen 73 ALRDYVEN 80 (217)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 77788874
No 179
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=28.06 E-value=83 Score=32.12 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=26.5
Q ss_pred CCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 194 EWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 194 ~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
..|++++++|.|+| .++..+-+.|.+.|++.+
T Consensus 19 ~~l~g~~vaIqGfG--------nVG~~~a~~L~~~G~~vV 50 (217)
T cd05211 19 DSLEGLTVAVQGLG--------NVGWGLAKKLAEEGGKVL 50 (217)
T ss_pred CCcCCCEEEEECCC--------HHHHHHHHHHHHcCCEEE
Confidence 36899999999977 467788888999998755
No 180
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=27.93 E-value=1.1e+02 Score=31.58 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=27.8
Q ss_pred ccCCCCC-CcEEEEEEEecCCCCccCCCCeeEEccCC
Q 005185 326 LHTPSSD-RSCTHLEFDIAGTGLTYETGDHVGVYCEN 361 (710)
Q Consensus 326 L~~~~~~-r~~~hle~di~~~~~~Y~~GD~l~V~p~N 361 (710)
+..+++. ..+++|+|+.++....|+||.++.|.+.+
T Consensus 8 ~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 8 LLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred ecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 4444443 37999999887567899999999999765
No 181
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=27.80 E-value=1e+02 Score=30.83 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=27.5
Q ss_pred CCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 193 GEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 193 ~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
+..+++++++|.|+| .+++.+-++|.+.|++.+
T Consensus 23 ~~~l~gk~v~I~G~G--------~vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 23 TDSLEGKTVAVQGLG--------KVGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCCCCEEEEECCC--------HHHHHHHHHHHHCCCEEE
Confidence 346899999999988 367888899999999755
No 182
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=27.70 E-value=1.7e+02 Score=25.84 Aligned_cols=58 Identities=9% Similarity=0.021 Sum_probs=42.8
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCC
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTy 170 (710)
+++|+...|+-=||+-.++.++.+.|++.+....+....++++.. ..... =||++++.
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~-------~~~~a--Diiv~s~~ 58 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKA-------LTDGA--DIIVTSTK 58 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEeccccc-------CCCcc--cEEEEehH
Confidence 468999999999999999999999999887544556666666553 22333 36666665
No 183
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=27.30 E-value=1.8e+02 Score=29.99 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=40.5
Q ss_pred hhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 156 ~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
+..+.+.++|-+|.. ++.|+..+..... ..+.+++++.+| ....+.++++|.+...
T Consensus 172 ~~~~~d~v~ftS~~~--------v~~~~~~~~~~~~--~~~~~~~v~~IG-------------~~Ta~~l~~~G~~~~~ 227 (248)
T COG1587 172 KLGEVDAVVFTSSSA--------VRALLALAPESGI--EFLERKRVASIG-------------PRTAETLKELGITVDI 227 (248)
T ss_pred HhCCCCEEEEeCHHH--------HHHHHHHccccch--hHhhCceEEEec-------------HHHHHHHHHcCCccee
Confidence 345667777776665 8889998876421 156778899998 6777889999988643
No 184
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=27.03 E-value=42 Score=31.26 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=34.8
Q ss_pred eEEEEeccCCch--HHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHH
Q 005185 200 KYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (710)
Q Consensus 200 ~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W 252 (710)
+++|+-.||.-+ .-++..+..+.++|++.|.+........|+...+.+.+++|
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~ 55 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEA 55 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHH
Confidence 478888898765 44677788899999999987654333344433344444444
No 185
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=25.97 E-value=1e+02 Score=27.72 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=24.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcC
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYD 134 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~ 134 (710)
|++|+++-|+-.+|+ -+|+++.+.+++++.
T Consensus 1 MkkILlvCg~G~STS-lla~k~k~~~~e~gi 30 (104)
T PRK09590 1 MKKALIICAAGMSSS-MMAKKTTEYLKEQGK 30 (104)
T ss_pred CcEEEEECCCchHHH-HHHHHHHHHHHHCCC
Confidence 468999999988666 999999888888763
No 186
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=25.45 E-value=1e+02 Score=26.98 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=48.6
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHH
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKW 185 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~ 185 (710)
+|+++.|+--+|+ -+|+++.+.+++++....+.-.++.+. .+...+++ +|+++|-. +..++.
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~D-iil~~Pqv---------~~~~~~ 62 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEKRGIDAEIEAVPESEL-------EEYIDDAD-VVLLGPQV---------RYMLDE 62 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHHCCCceEEEEecHHHH-------HHhcCCCC-EEEEChhH---------HHHHHH
Confidence 4788899988888 689999999988764322333333222 12344556 46665554 234444
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHH
Q 005185 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFN 215 (710)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~ 215 (710)
+++.. ...+.++.+.. ...|...|
T Consensus 63 i~~~~----~~~~~pv~~I~--~~~Y~~~d 86 (96)
T cd05564 63 VKKKA----AEYGIPVAVID--MMDYGMMN 86 (96)
T ss_pred HHHHh----ccCCCcEEEcC--hHhcccCC
Confidence 54321 12356666665 33455444
No 187
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=25.41 E-value=2e+02 Score=33.12 Aligned_cols=89 Identities=13% Similarity=0.114 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhcCCceeE--EecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcC
Q 005185 120 GFAKALADEARARYDKAIFK--VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQ 197 (710)
Q Consensus 120 ~~A~~la~~l~~~~~~~~v~--v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~ 197 (710)
.-+..+++.|++.|. ..+. .+.+...... +..+..+.+++-+||-++. ..+.|+++|.+....-..|.
T Consensus 261 ~q~~~l~~~L~~~GA-~v~~~P~i~~~~~~~~-~~~l~~l~~ydwlvFTS~n--------gV~~Ff~~l~~~~~D~R~l~ 330 (474)
T PRK07168 261 NKTSVMKQKLQEAGA-EIYQIPTFKKEEYTLT-LEQINEIFNVNRLVFCSAE--------SVEILMQSCSKYKKDIRSLQ 330 (474)
T ss_pred HHHHHHHHHHHHcCC-EEEEeccEEeeCCCCc-HHHHHHhccCCEEEEcCHH--------HHHHHHHHHHHcCCChHHhC
Confidence 345566777776652 1111 1222222221 2345678888866664432 47788999987532223455
Q ss_pred CceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcc
Q 005185 198 KLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKR 232 (710)
Q Consensus 198 ~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 232 (710)
.++|+.| .+..+.|++.|-..
T Consensus 331 -~kiaavG-------------~~Ta~aL~~~Gl~~ 351 (474)
T PRK07168 331 -AELQHMN-------------VATQEKLMQYGLLS 351 (474)
T ss_pred -CEEEEEC-------------HHHHHHHHhCCCcc
Confidence 7888888 56667788877653
No 188
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=25.21 E-value=3.9e+02 Score=27.62 Aligned_cols=57 Identities=14% Similarity=0.041 Sum_probs=36.2
Q ss_pred HhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 155 EKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 155 ~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
..+..++.+||.+++- .+.|.++|.+.. ....+.+++..| ++-.+.|++.|-+..+
T Consensus 51 ~~l~~~d~iifTS~na--------V~~~~~~l~~~~---~~~~~~~~~aVG-------------~~Ta~al~~~G~~~~~ 106 (255)
T PRK05752 51 LELDRYCAVIVVSKPA--------ARLGLELLDRYW---PQPPQQPWFSVG-------------AATAAILQDYGLDVSY 106 (255)
T ss_pred hcCCCCCEEEEECHHH--------HHHHHHHHHhhC---CCCcCCEEEEEC-------------HHHHHHHHHcCCCccc
Confidence 4567888766666433 566788886532 123457787777 5666777778876544
Q ss_pred c
Q 005185 235 P 235 (710)
Q Consensus 235 ~ 235 (710)
+
T Consensus 107 ~ 107 (255)
T PRK05752 107 P 107 (255)
T ss_pred C
Confidence 3
No 189
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=25.09 E-value=5.5e+02 Score=25.42 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=40.2
Q ss_pred HhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 155 EKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 155 ~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
..+...+.+||.++. .++.|++.+.+.. ...+.+.++.+.| +...+.|++.|.+..+
T Consensus 45 ~~~~~~~~iiftS~~--------av~~~~~~~~~~~--~~~~~~~~~~avG-------------~~Ta~~l~~~g~~~~~ 101 (239)
T cd06578 45 ADLDEYDWLIFTSPN--------AVEAFFEALEELG--LRALAGLKIAAVG-------------PKTAEALREAGLTADF 101 (239)
T ss_pred HhcCCCCEEEEECHH--------HHHHHHHHHHhhC--CccccCCEEEEEC-------------HHHHHHHHHcCCCcee
Confidence 345567777776653 3677777776532 2357788888887 6777888899988765
Q ss_pred c
Q 005185 235 P 235 (710)
Q Consensus 235 ~ 235 (710)
.
T Consensus 102 ~ 102 (239)
T cd06578 102 V 102 (239)
T ss_pred C
Confidence 3
No 190
>PLN02928 oxidoreductase family protein
Probab=25.03 E-value=2.2e+02 Score=31.21 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=28.0
Q ss_pred CCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 194 EWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 194 ~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
..|.|++++|+|+| .+++.+.++|..+|++.++
T Consensus 155 ~~l~gktvGIiG~G--------~IG~~vA~~l~afG~~V~~ 187 (347)
T PLN02928 155 DTLFGKTVFILGYG--------AIGIELAKRLRPFGVKLLA 187 (347)
T ss_pred cCCCCCEEEEECCC--------HHHHHHHHHHhhCCCEEEE
Confidence 35899999999977 5889999999999997543
No 191
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=24.27 E-value=1.2e+02 Score=33.65 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=31.1
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCC-ceeEEecC
Q 005185 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDK-AIFKVVDI 143 (710)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~-~~v~v~dl 143 (710)
.+++|+|+.+|-.|-=...|+.|++++..++.. ..+.++|+
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~ 45 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDL 45 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeeh
Confidence 468999999998767788899999999877532 34555554
No 192
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=24.15 E-value=2e+02 Score=26.70 Aligned_cols=62 Identities=21% Similarity=0.132 Sum_probs=39.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCC
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTy 170 (710)
..+|+|-|.+ .-+++.+++.+++.+.+.| ++|+|+.........|.-.-.+.+.-|++++++
T Consensus 40 ~~~VvVg~D~-R~~s~~~~~~~~~~l~~~G----~~V~~~g~~~tP~~~~~~~~~~~~ggi~iTaSh 101 (137)
T PF02878_consen 40 GSRVVVGRDT-RPSSPMLAKALAAGLRANG----VDVIDIGLVPTPALSFAIRQLNADGGIMITASH 101 (137)
T ss_dssp SSEEEEEE-S-STTHHHHHHHHHHHHHHTT----EEEEEEEEB-HHHHHHHHHHHTESEEEEE--TT
T ss_pred CCeEEEEEcc-cCCHHHHHHHHHHHHhhcc----cccccccccCcHHhhhhccccccceeeEEEecC
Confidence 4679999999 4567889999999999876 677777643322222322223456778888876
No 193
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=24.09 E-value=3.2e+02 Score=28.72 Aligned_cols=104 Identities=8% Similarity=0.011 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHH--HHhhc-CCCeEEEEec-CCCCCCCCchHHHHHHHHHhhcCCC
Q 005185 118 AEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY--EEKLK-KENIVFFFLA-TYGDGEPTDNAARFYKWFTEQKEGG 193 (710)
Q Consensus 118 ae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~--~~~l~-~~~~~if~~s-TyG~G~~pdna~~F~~~L~~~~~~~ 193 (710)
..++|++|++.+.+.+ ..+..++-.+...|.--. +.-+. ..++-++.++ +.+ .-.+....+|=+.|.+.- +
T Consensus 86 ~~eLA~~i~~~~~~~g--i~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~~~~~~~~~lG~al~~~l-~- 160 (268)
T cd07371 86 DVELAEACVEEGRKAG--LVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-YLSGEETEGEMDLAGKAT-R- 160 (268)
T ss_pred CHHHHHHHHHHHHHCC--CcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-CCCHHHHHHHHHHHHHHH-H-
Confidence 4678999999998776 333333333333221111 11122 2343233333 332 223333334444443210 0
Q ss_pred CCcCCceEEEEeccCCchH------------HHHHHHHHHHHHHHHc
Q 005185 194 EWLQKLKYGVFGLGNRQYE------------HFNKIAKVVDEILANQ 228 (710)
Q Consensus 194 ~~l~~~~~aVFGlGds~Y~------------~f~~~~k~ld~~L~~l 228 (710)
-.+++++|+|.|+.+.. .|...++.+|+++.++
T Consensus 161 --~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~ 205 (268)
T cd07371 161 --DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLEL 205 (268)
T ss_pred --HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHH
Confidence 12488999999988752 2336677777777654
No 194
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=23.98 E-value=2.4e+02 Score=29.54 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=16.0
Q ss_pred CCCeEEEecCCcchHHHHH
Q 005185 559 KVPIIMIGPGTGLAPFRGF 577 (710)
Q Consensus 559 ~~piImIa~GTGIAPfrs~ 577 (710)
...|+=||+|+|+.|+.-.
T Consensus 45 ~~~IlDlGaG~G~l~L~la 63 (248)
T COG4123 45 KGRILDLGAGNGALGLLLA 63 (248)
T ss_pred CCeEEEecCCcCHHHHHHh
Confidence 5679999999999998443
No 195
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=23.63 E-value=3.8e+02 Score=26.62 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=31.6
Q ss_pred chHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005185 177 DNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (710)
Q Consensus 177 dna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (710)
..++.|++++.+.. ...+.+.++.++| .+..+.|++.|-+.++.
T Consensus 183 ~~v~~f~~~~~~~~--~~~~~~~~~~aig-------------~~t~~~l~~~g~~~~~~ 226 (239)
T cd06578 183 STVRNLLELLGKEG--RALLKNVKIAAIG-------------PRTAEALRELGLKVVIV 226 (239)
T ss_pred HHHHHHHHHHhhhh--hhhhcCCeEEEEC-------------HHHHHHHHHcCCCceee
Confidence 35788888887532 2357788888887 67778888888876653
No 196
>PHA03164 hypothetical protein; Provisional
Probab=23.24 E-value=2.2e+02 Score=24.00 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=17.4
Q ss_pred hhhhhhccCch----hhHHHHHHHHHHHH
Q 005185 43 EVASIVLDNKE----FVMILTTSIAVLIG 67 (710)
Q Consensus 43 ~~~~~~~~~~~----~~~~~~~~~~~~~~ 67 (710)
.-||.+|.|++ ++++.++++++++.
T Consensus 45 rtawnlwnnrRktftFlvLtgLaIamILf 73 (88)
T PHA03164 45 RTAWNLWNNRRKTFTFLVLTGLAIAMILF 73 (88)
T ss_pred chhHHHHHhhhheeehHHHHHHHHHHHHH
Confidence 35899999854 56666777776655
No 197
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=22.30 E-value=46 Score=27.79 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=23.0
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhh
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARAR 132 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~ 132 (710)
+++|+.++-.|++..++.+|.+.+...
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~~ 28 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPEI 28 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCCc
Confidence 688999999999999999998887543
No 198
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=21.80 E-value=7.3e+02 Score=24.89 Aligned_cols=96 Identities=24% Similarity=0.233 Sum_probs=51.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
.++|.|+|.... ..+..++.+.+.+++.+... +.......-..+-......+.....-++++.+.+ +.+..|+
T Consensus 135 ~~~i~~v~~~~~-~~~~~~~~~~~~~~~~g~~i-~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~~ 207 (298)
T cd06268 135 VKKVAIIYDDYA-YGRGLAAAFREALKKLGGEV-VAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYG-----GDAALFL 207 (298)
T ss_pred CCEEEEEEcCCc-hhHHHHHHHHHHHHHcCCEE-EEEeccCCCCccHHHHHHHHHhcCCCEEEEcccc-----chHHHHH
Confidence 578999987654 66777888888777655211 1111111111111122333443322223333331 5677888
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHH
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHF 214 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f 214 (710)
+.+.+. +....++|+.....+.+
T Consensus 208 ~~~~~~--------g~~~~~~~~~~~~~~~~ 230 (298)
T cd06268 208 KQAREA--------GLKVPIVGGDGAAAPAL 230 (298)
T ss_pred HHHHHc--------CCCCcEEecCccCCHHH
Confidence 888753 33677888776655444
No 199
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=21.77 E-value=59 Score=27.19 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=14.8
Q ss_pred ccCCCCeeEEccCCCH
Q 005185 348 TYETGDHVGVYCENLS 363 (710)
Q Consensus 348 ~Y~~GD~l~V~p~N~~ 363 (710)
.|++||.|.|+.+|+-
T Consensus 5 ~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 5 PYHAGDIVYVIYRNPH 20 (75)
T ss_pred ccCCCCEEEEEEcCCC
Confidence 6999999999999984
No 200
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=21.51 E-value=3.4e+02 Score=27.65 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=19.0
Q ss_pred cCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 196 LQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 196 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
+.++++++.| +...+.|++.|.+.+.
T Consensus 73 ~~~~~~~aVG-------------~~Ta~~l~~~G~~~~~ 98 (240)
T PRK09189 73 HLALPLFAVG-------------EATAEAARELGFRHVI 98 (240)
T ss_pred hcCCeEEEEc-------------HHHHHHHHHcCCCCCc
Confidence 5677787777 6677788888877554
No 201
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=21.47 E-value=1.7e+02 Score=29.50 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=30.0
Q ss_pred eEEEEeeecccCCCCCCcEEEEEEEecCC-CCccCCCCeeEEccCC
Q 005185 317 RSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCEN 361 (710)
Q Consensus 317 ~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~V~p~N 361 (710)
.++|+..+.++. +++++.|+++.. .+.|+||.++.|..++
T Consensus 2 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 2 VGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred ceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 467777777753 478888887543 5789999999998654
No 202
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=21.40 E-value=6.3e+02 Score=24.54 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=5.5
Q ss_pred HHHHHHHHHcCC
Q 005185 219 KVVDEILANQGA 230 (710)
Q Consensus 219 k~ld~~L~~lGa 230 (710)
..+-+.+.++|.
T Consensus 195 ~~~~~~~~~~g~ 206 (269)
T cd01391 195 AGALKAAREAGL 206 (269)
T ss_pred HHHHHHHHHcCC
Confidence 333444455554
No 203
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=21.04 E-value=5.3e+02 Score=27.04 Aligned_cols=99 Identities=8% Similarity=0.047 Sum_probs=51.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCce-eEEecCCCCC-CcchHHHHhhcCCCeEEEEecCCCCCCCCchHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAI-FKVVDIDDYA-DEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~-v~v~dl~~~~-~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (710)
.++|+|- ...+ -+..+++.|++.|.... .-.+++...+ ........++.+++.+||.+++- .+.
T Consensus 18 g~~IlvT-----Rp~~-q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NA--------V~~ 83 (266)
T PRK08811 18 AWTLISL-----RPSG-EHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAA--------VRA 83 (266)
T ss_pred CCEEEEe-----CCHH-HHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHH--------HHH
Confidence 4566663 3322 35566677777663210 1122222111 01112235677888877766432 444
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
|..++ +. ..+.+++++..| ++-.+.|++.|....+
T Consensus 84 ~~~~~-~~----~~~~~~~~~AVG-------------~~TA~aL~~~G~~~~~ 118 (266)
T PRK08811 84 AHRLL-PL----QRPARAHWLSVG-------------EGTARALQACGIDEVV 118 (266)
T ss_pred HHHHh-cc----cCccCCeEEEEC-------------HHHHHHHHHcCCCcee
Confidence 55433 21 246788888887 5566777788876543
No 204
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=20.78 E-value=4.5e+02 Score=27.09 Aligned_cols=60 Identities=23% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 154 ~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
...+..++.++|-++ . ..+.|++.+..... .++.+.++++.| .+..+.|+++|-+..
T Consensus 45 l~~l~~~d~vvfTS~-~-------av~~~~~~l~~~~~--~~~~~~~i~aVG-------------~~Ta~~l~~~G~~~~ 101 (248)
T COG1587 45 LEDLDSADWVVFTSP-N-------AVRFFFEALKEQGL--DALKNKKIAAVG-------------EKTAEALRKLGIKVD 101 (248)
T ss_pred HhccccCCEEEEECH-H-------HHHHHHHHHHhhcc--cccccCeEEEEc-------------HHHHHHHHHhCCCCC
Confidence 345556665555443 2 36667777765431 167889999998 667788999998865
Q ss_pred ccc
Q 005185 234 VPV 236 (710)
Q Consensus 234 ~~~ 236 (710)
+..
T Consensus 102 ~~p 104 (248)
T COG1587 102 FIP 104 (248)
T ss_pred cCC
Confidence 543
No 205
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=20.71 E-value=2.2e+02 Score=31.70 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=41.8
Q ss_pred hcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhc-CCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 157 LKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK-EGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 157 l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~-~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
+.+.++.+.-++.+ + ...-|+.-+-.+.... ..+..|.+++++|+|+| .+++.+.++|+.+|.+.++
T Consensus 77 ~~~~gI~v~napg~-n--a~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G--------~IG~~vA~~l~a~G~~V~~ 144 (378)
T PRK15438 77 LKQAGIGFSAAPGC-N--AIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVG--------NVGRRLQARLEALGIKTLL 144 (378)
T ss_pred HHHCCCEEEECCCc-C--chHHHHHHHHHHHHHhccCCCCcCCCEEEEECcC--------HHHHHHHHHHHHCCCEEEE
Confidence 45556555555543 1 2222333333333221 12346999999999987 5899999999999998653
No 206
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=20.68 E-value=55 Score=34.94 Aligned_cols=63 Identities=25% Similarity=0.410 Sum_probs=38.0
Q ss_pred CCc-cCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCCCCCCCCCCCCCCCCC--cchHHHHHHhcccccC
Q 005185 346 GLT-YETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP--PCSLRTALTKYADLLS 419 (710)
Q Consensus 346 ~~~-Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~~p--p~tl~~~l~~~~Dl~~ 419 (710)
+.+ +++|||+-..+.|...--+.. -++.++++.+... -++. ....+. |||-...|.+|+||..
T Consensus 95 ~vkgfk~Gd~VIp~~a~lGtW~t~~----v~~e~~Li~vd~~----~pl~---~AAT~~VNP~TAyrmL~dfv~L~~ 160 (354)
T KOG0025|consen 95 NVKGFKPGDWVIPLSANLGTWRTEA----VFSESDLIKVDKD----IPLA---SAATLSVNPCTAYRMLKDFVQLNK 160 (354)
T ss_pred CcCccCCCCeEeecCCCCccceeeE----eecccceEEcCCc----CChh---hhheeccCchHHHHHHHHHHhcCC
Confidence 444 999999999999976422211 1344555444311 1111 011222 8999999999999964
No 207
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=20.54 E-value=1.1e+02 Score=28.73 Aligned_cols=54 Identities=20% Similarity=0.323 Sum_probs=40.4
Q ss_pred CCccHHHHHHHHHhCCCH----------HHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCCC
Q 005185 419 SSPKKSALLALAAHASDP----------TEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFPS 474 (710)
Q Consensus 419 ~~p~k~~l~~La~~~~d~----------~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL~~fps 474 (710)
.-|++.++..|.+...+. -|+.+|++|+.. -.+|.+.+..-...++|++.-|..
T Consensus 54 ~DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL~ela~~--~p~~~~~l~~I~~r~vDL~~~f~~ 117 (130)
T PF11074_consen 54 EDPRRELIEALIKAIGSIYGSIVVYNKSFEKTRLKELAEL--FPDYAEKLNSIIERTVDLLDPFKN 117 (130)
T ss_pred CCchHHHHHHHHHHhhhhcCeEEEechHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468888888888877666 799999999753 456777777666677777776643
No 208
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=20.38 E-value=1.5e+02 Score=27.82 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=27.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEec
Q 005185 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVD 142 (710)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~d 142 (710)
-.++|.|.|...+..|+.|.+-+.+++. .+.+..
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~g~--~v~~~~ 57 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEKGI--NVEVVE 57 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT---EEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence 7899999999999999999999998763 344443
No 209
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=20.31 E-value=3.6e+02 Score=28.39 Aligned_cols=87 Identities=11% Similarity=0.057 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHH--HHhh-c-CCCeEEEEecCCCCCCCCchHHHHHHHHHhhcCCC
Q 005185 118 AEGFAKALADEARARYDKAIFKVVDIDDYADEEDEY--EEKL-K-KENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGG 193 (710)
Q Consensus 118 ae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~--~~~l-~-~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~ 193 (710)
..++|+.|++.+.+.+ ..+..+|-+....|.--. +.-+ . ..++=|+.+|... .-++....+|=+.|.+.-
T Consensus 89 ~~eLA~~i~~~~~~~g--i~~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~~s~~~-~~~~~~~~~lG~al~~~l--- 162 (271)
T cd07373 89 DTALAEACVTACPEHG--VHARGVDYDGFPIDTGTITACTLMGIGTEALPLVVASNNL-YHSGEITEKLGAIAADAA--- 162 (271)
T ss_pred CHHHHHHHHHHHHHCC--CcEEEecCCCCCCcchhHHHHHHHcccCCCCCEEEEEeCC-CCCHHHHHHHHHHHHHHH---
Confidence 5778999999988765 334334443222221100 1112 1 1222122233321 224444445545555311
Q ss_pred CCcCCceEEEEeccCCch
Q 005185 194 EWLQKLKYGVFGLGNRQY 211 (710)
Q Consensus 194 ~~l~~~~~aVFGlGds~Y 211 (710)
.-.+.+++|+|.||-+.
T Consensus 163 -~~~~~rV~iIgSG~lSH 179 (271)
T cd07373 163 -KDQNKRVAVVGVGGLSG 179 (271)
T ss_pred -HHcCCeEEEEEeccccc
Confidence 01348999999998886
No 210
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=20.25 E-value=62 Score=30.61 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=36.5
Q ss_pred eEEEEeccCCchH---------HHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHH
Q 005185 200 KYGVFGLGNRQYE---------HFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 253 (710)
Q Consensus 200 ~~aVFGlGds~Y~---------~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~ 253 (710)
+++|+-.||.-++ -++..+..+.++|+++|++...-....|+...+.+.+++|.
T Consensus 2 rv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~ 64 (144)
T TIGR00177 2 RVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAV 64 (144)
T ss_pred EEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHH
Confidence 6788888876552 35667788999999999986544444555445555565553
Done!