Query 005185
Match_columns 710
No_of_seqs 470 out of 2874
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 17:59:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe2_A CPR, P450R, NADPH--cyto 100.0 2E-113 7E-118 994.0 60.3 586 102-710 16-617 (618)
2 2bpo_A CPR, P450R, NADPH-cytoc 100.0 1E-107 3E-112 956.2 56.2 582 99-710 44-682 (682)
3 1tll_A Nitric-oxide synthase, 100.0 3E-103 9E-108 919.1 55.2 582 102-710 9-654 (688)
4 3qfs_A CPR, P450R, NADPH--cyto 100.0 5.6E-85 1.9E-89 728.0 46.7 424 279-710 21-457 (458)
5 2qtl_A MSR;, methionine syntha 100.0 9E-80 3.1E-84 700.1 41.0 402 306-710 105-538 (539)
6 4dql_A Bifunctional P-450/NADP 100.0 2.8E-77 9.7E-82 656.9 38.1 377 314-710 5-391 (393)
7 1f20_A Nitric-oxide synthase; 100.0 1.8E-75 6.1E-80 651.4 40.5 392 309-710 24-433 (435)
8 1ddg_A Sulfite reductase (NADP 100.0 1.8E-73 6E-78 623.6 38.1 362 309-710 5-374 (374)
9 1fnb_A Ferredoxin-NADP+ reduct 100.0 2.5E-36 8.4E-41 322.7 25.9 268 309-710 31-314 (314)
10 2bmw_A Ferredoxin--NADP reduct 100.0 6.7E-36 2.3E-40 317.7 26.9 269 309-710 15-304 (304)
11 2b5o_A FNR, ferredoxin--NADP r 100.0 7.9E-35 2.7E-39 321.4 26.0 269 309-710 116-402 (402)
12 3vo2_A Putative uncharacterize 100.0 1.3E-34 4.5E-39 308.9 17.9 221 478-710 67-310 (310)
13 2rc5_A Ferredoxin-NADP reducta 100.0 1.5E-33 5.3E-38 301.0 23.6 272 310-710 16-314 (314)
14 3hr4_A Nitric oxide synthase, 100.0 7.6E-34 2.6E-38 285.8 15.8 153 102-266 38-190 (219)
15 3lo8_A Ferredoxin--NADP reduct 100.0 2.5E-33 8.7E-38 298.9 16.9 222 477-710 61-311 (311)
16 3jqq_A Ferredoxin NADP reducta 100.0 1.6E-31 5.6E-36 285.8 23.1 288 309-710 9-316 (316)
17 1bvy_F Protein (cytochrome P45 99.9 9.6E-28 3.3E-32 238.0 14.6 148 102-261 19-167 (191)
18 1ykg_A SIR-FP, sulfite reducta 99.9 5.1E-26 1.7E-30 220.9 13.9 151 102-264 7-157 (167)
19 2hna_A Protein MIOC, flavodoxi 99.9 4.5E-26 1.5E-30 216.3 6.5 144 104-260 1-146 (147)
20 1tvc_A Methane monooxygenase c 99.9 1.7E-24 5.8E-29 223.2 15.8 180 476-680 43-232 (250)
21 2r6h_A NADH:ubiquinone oxidore 99.9 1.3E-24 4.4E-29 228.9 12.0 177 490-680 84-277 (290)
22 1qfj_A Protein (flavin reducta 99.9 2.9E-24 1E-28 218.8 13.2 178 476-679 29-216 (232)
23 2eix_A NADH-cytochrome B5 redu 99.9 2.9E-24 9.8E-29 220.4 11.6 181 477-680 42-233 (243)
24 1fdr_A Flavodoxin reductase; f 99.9 4.3E-24 1.5E-28 219.7 12.3 184 476-680 30-229 (248)
25 3f6r_A Flavodoxin; FMN binding 99.9 6.7E-24 2.3E-28 201.2 10.9 142 104-259 1-147 (148)
26 1umk_A B5R, NADH-cytochrome B5 99.9 2.7E-24 9.1E-29 224.8 8.9 190 477-680 47-265 (275)
27 4eh1_A Flavohemoprotein; struc 99.9 1.4E-23 4.6E-28 215.2 13.9 180 476-681 33-224 (243)
28 4fk8_A Ferredoxin--NADP reduct 99.9 1.9E-24 6.4E-29 225.6 5.4 201 476-710 46-268 (271)
29 1gvh_A Flavohemoprotein; oxido 99.9 3.6E-23 1.2E-27 227.7 15.4 177 477-680 183-378 (396)
30 1krh_A Benzoate 1,2-dioxygenas 99.9 3E-23 1E-27 223.5 14.1 178 476-680 138-323 (338)
31 2bgi_A Ferredoxin-NADP(H) redu 99.9 2.8E-23 9.6E-28 217.1 11.1 183 477-680 44-248 (272)
32 4g1v_A Flavohemoglobin; three 99.9 1E-22 3.4E-27 224.5 15.2 180 478-681 185-379 (399)
33 1cqx_A Flavohemoprotein; globi 99.9 5.7E-23 1.9E-27 226.6 12.1 185 477-680 185-384 (403)
34 2cnd_A NADH-dependent nitrate 99.9 2E-23 6.7E-28 217.5 7.9 190 476-679 42-258 (270)
35 2qdx_A Ferredoxin reductase; o 99.9 2.5E-23 8.6E-28 215.4 7.7 184 476-680 30-234 (257)
36 1ep3_B Dihydroorotate dehydrog 99.9 6.9E-23 2.4E-27 212.9 9.9 167 477-679 34-211 (262)
37 1f4p_A Flavodoxin; electron tr 99.9 9.7E-22 3.3E-26 185.9 11.0 141 105-258 1-145 (147)
38 2pia_A Phthalate dioxygenase r 99.8 1.5E-21 5.3E-26 208.9 10.1 170 476-679 38-214 (321)
39 2wc1_A Flavodoxin; electron tr 99.8 9.9E-22 3.4E-26 193.1 7.8 146 104-263 1-179 (182)
40 1yob_A Flavodoxin 2, flavodoxi 99.8 2.8E-21 9.4E-26 189.5 9.0 143 105-261 1-176 (179)
41 2fcr_A Flavodoxin; electron tr 99.8 1.2E-20 4.1E-25 183.9 13.0 140 106-260 1-171 (173)
42 1ag9_A Flavodoxin; electron tr 99.8 8.6E-21 2.9E-25 185.3 10.2 143 105-262 1-169 (175)
43 2bmv_A Flavodoxin; electron tr 99.8 5.6E-21 1.9E-25 184.4 6.7 138 104-260 1-163 (164)
44 1obo_A Flavodoxin; electron tr 99.8 4.7E-20 1.6E-24 178.6 11.7 142 105-261 2-168 (169)
45 1czn_A Flavodoxin; FMN binding 99.8 5.5E-20 1.9E-24 178.1 10.4 142 105-260 1-167 (169)
46 5nul_A Flavodoxin; electron tr 99.7 1.3E-17 4.5E-22 155.8 13.7 116 107-239 1-117 (138)
47 2gpj_A Siderophore-interacting 99.7 1.7E-17 5.8E-22 171.4 6.3 168 477-678 39-211 (252)
48 2xod_A NRDI protein, NRDI; fla 99.7 2.7E-17 9.1E-22 150.3 6.4 116 107-257 1-117 (119)
49 3hly_A Flavodoxin-like domain; 99.7 1.2E-16 4E-21 153.9 10.3 141 105-261 1-143 (161)
50 3fni_A Putative diflavin flavo 99.7 1.5E-16 5E-21 153.0 10.1 143 104-262 4-149 (159)
51 3a1f_A Cytochrome B-245 heavy 99.6 1.3E-16 4.6E-21 155.8 6.8 134 546-681 4-170 (186)
52 2fz5_A Flavodoxin; alpha/beta 99.6 2.7E-15 9.2E-20 139.3 13.0 133 107-257 2-135 (137)
53 3lrx_A Putative hydrogenase; a 99.6 3.5E-16 1.2E-20 150.2 7.0 122 542-681 6-136 (158)
54 3lyu_A Putative hydrogenase; t 99.6 6.8E-16 2.3E-20 145.5 8.3 120 544-681 4-131 (142)
55 1rlj_A NRDI protein; flavoprot 99.6 4.1E-16 1.4E-20 146.3 5.7 120 105-258 9-129 (139)
56 4dik_A Flavoprotein; TM0755, e 99.4 1.2E-12 4.1E-17 144.2 12.0 120 102-235 263-385 (410)
57 1e5d_A Rubredoxin\:oxygen oxid 99.3 3.9E-12 1.3E-16 139.4 13.8 146 104-263 252-399 (402)
58 2a5l_A Trp repressor binding p 99.3 6.7E-12 2.3E-16 124.0 14.1 128 104-235 5-145 (200)
59 1ycg_A Nitric oxide reductase; 99.3 2.2E-12 7.5E-17 141.2 11.5 119 104-236 251-369 (398)
60 2ark_A Flavodoxin; FMN, struct 99.3 9E-12 3.1E-16 122.5 14.5 149 104-264 4-169 (188)
61 3n3a_C Protein NRDI; ribonucle 99.3 3.4E-12 1.2E-16 120.0 9.9 98 104-226 20-122 (153)
62 2q9u_A A-type flavoprotein; fl 99.3 3.3E-11 1.1E-15 132.7 14.6 146 103-262 255-405 (414)
63 3b6i_A Flavoprotein WRBA; flav 99.2 5.3E-11 1.8E-15 117.4 13.7 125 104-234 1-140 (198)
64 2ohh_A Type A flavoprotein FPR 99.2 2.3E-11 7.9E-16 133.3 11.7 148 102-260 254-402 (404)
65 3klb_A Putative flavoprotein; 99.2 4.1E-11 1.4E-15 115.2 10.8 133 104-256 4-160 (162)
66 2zki_A 199AA long hypothetical 99.2 1.1E-10 3.9E-15 115.2 12.9 125 104-235 4-144 (199)
67 3d7n_A Flavodoxin, WRBA-like p 99.2 1.1E-10 3.7E-15 115.3 12.2 121 103-233 5-126 (193)
68 1ydg_A Trp repressor binding p 99.2 9.1E-11 3.1E-15 117.2 11.4 128 103-235 5-152 (211)
69 4ici_A Putative flavoprotein; 99.2 1.5E-10 5E-15 112.4 11.6 135 102-256 11-168 (171)
70 2vzf_A NADH-dependent FMN redu 99.1 1.7E-10 5.8E-15 114.3 8.7 122 104-234 2-137 (197)
71 1t5b_A Acyl carrier protein ph 99.0 2.3E-09 8E-14 105.6 14.2 157 104-262 1-197 (201)
72 3edo_A Flavoprotein, putative 98.9 2.9E-09 1E-13 100.8 8.6 127 104-253 3-150 (151)
73 1sqs_A Conserved hypothetical 98.8 2.8E-08 9.6E-13 101.4 13.1 152 104-261 1-178 (242)
74 1rtt_A Conserved hypothetical 98.8 2.5E-08 8.4E-13 98.1 11.5 124 104-234 6-143 (193)
75 1t0i_A YLR011WP; FMN binding p 98.8 4E-08 1.4E-12 96.3 12.4 120 105-234 1-149 (191)
76 3gfs_A FMN-dependent NADPH-azo 98.8 2.4E-08 8.1E-13 96.6 9.9 115 105-234 1-131 (174)
77 2hpv_A FMN-dependent NADH-azor 98.7 1.5E-07 5E-12 93.5 13.0 157 104-262 1-203 (208)
78 2q62_A ARSH; alpha/beta, flavo 98.6 6.7E-07 2.3E-11 91.6 15.7 127 102-233 32-169 (247)
79 1rli_A Trp repressor binding p 98.5 5.2E-07 1.8E-11 87.4 12.5 125 103-235 2-153 (184)
80 2fzv_A Putative arsenical resi 98.5 1.1E-06 3.8E-11 91.3 13.6 127 102-233 56-194 (279)
81 3fvw_A Putative NAD(P)H-depend 98.4 2.3E-06 7.9E-11 84.1 14.6 126 104-235 2-145 (192)
82 3r6w_A FMN-dependent NADH-azor 98.4 3E-06 1E-10 84.4 14.9 157 104-262 1-207 (212)
83 3rpe_A MDAB, modulator of drug 98.4 6.5E-06 2.2E-10 82.5 17.1 157 102-264 23-216 (218)
84 3k1y_A Oxidoreductase; structu 98.4 1.9E-06 6.6E-11 84.7 11.3 125 102-233 9-152 (191)
85 4hs4_A Chromate reductase; tri 98.3 6.7E-06 2.3E-10 81.4 13.9 124 104-234 6-144 (199)
86 3lcm_A SMU.1420, putative oxid 98.3 3.9E-06 1.3E-10 82.8 11.5 156 105-264 1-189 (196)
87 2amj_A Modulator of drug activ 98.2 2.7E-05 9.2E-10 77.3 16.3 150 103-256 11-199 (204)
88 3f2v_A General stress protein 98.2 8.8E-06 3E-10 80.1 12.4 157 104-263 1-181 (192)
89 1d4a_A DT-diaphorase, quinone 98.2 1.3E-05 4.4E-10 83.3 14.1 158 104-264 2-215 (273)
90 3p0r_A Azoreductase; structura 98.2 1.2E-05 4.3E-10 80.1 13.1 158 104-263 4-207 (211)
91 3s2y_A Chromate reductase; ura 97.5 2.1E-07 7E-12 92.3 0.0 124 104-234 6-144 (199)
92 3tem_A Ribosyldihydronicotinam 98.1 2.4E-05 8.3E-10 79.0 13.0 157 105-264 2-214 (228)
93 3u7r_A NADPH-dependent FMN red 98.0 0.00016 5.4E-09 70.9 15.9 124 104-233 2-138 (190)
94 3u7i_A FMN-dependent NADH-azor 97.9 0.00011 3.6E-09 74.1 14.5 161 103-264 3-214 (223)
95 3svl_A Protein YIEF; E. coli C 97.9 9.2E-05 3.1E-09 72.8 13.5 155 103-264 3-183 (193)
96 3ha2_A NADPH-quinone reductase 97.9 7.6E-05 2.6E-09 72.4 12.5 151 105-263 1-167 (177)
97 3l9w_A Glutathione-regulated p 97.6 0.00052 1.8E-08 75.4 14.1 157 104-264 236-408 (413)
98 4gi5_A Quinone reductase; prot 97.2 0.0034 1.2E-07 65.2 14.0 159 103-264 21-242 (280)
99 3vo2_A Putative uncharacterize 83.3 2 6.8E-05 44.5 7.3 52 309-361 27-78 (310)
100 1tvm_A PTS system, galactitol- 78.3 5.3 0.00018 35.0 7.2 46 102-147 19-64 (113)
101 1ccw_A Protein (glutamate muta 62.3 12 0.00042 33.7 6.0 110 109-237 6-120 (137)
102 1e2b_A Enzyme IIB-cellobiose; 61.9 14 0.00048 31.9 6.0 58 104-170 3-60 (106)
103 2l2q_A PTS system, cellobiose- 56.3 12 0.00042 32.3 4.7 56 104-168 4-59 (109)
104 3lo8_A Ferredoxin--NADP reduct 55.0 21 0.00072 36.5 7.1 51 310-361 23-73 (311)
105 2l2t_A Receptor tyrosine-prote 47.6 24 0.00081 25.6 4.1 16 64-79 24-39 (44)
106 3czc_A RMPB; alpha/beta sandwi 45.1 15 0.00052 31.8 3.5 31 103-133 17-47 (110)
107 2jwa_A Receptor tyrosine-prote 44.9 24 0.00081 25.6 3.7 18 62-79 23-40 (44)
108 2ks1_B Epidermal growth factor 43.4 29 0.001 25.1 4.1 13 66-78 27-39 (44)
109 1vkr_A Mannitol-specific PTS s 40.5 44 0.0015 29.6 5.9 44 103-146 12-56 (125)
110 3rht_A (gatase1)-like protein; 35.1 54 0.0018 33.0 6.2 75 103-187 3-77 (259)
111 3s2u_A UDP-N-acetylglucosamine 33.7 32 0.0011 36.0 4.4 25 560-584 3-29 (365)
112 1mkz_A Molybdenum cofactor bio 33.5 32 0.0011 32.3 3.9 58 195-252 7-64 (172)
113 4e5v_A Putative THUA-like prot 33.4 2.1E+02 0.0072 28.9 10.4 81 104-188 4-85 (281)
114 3nbm_A PTS system, lactose-spe 32.7 1E+02 0.0035 26.5 6.8 78 104-205 6-85 (108)
115 3ju3_A Probable 2-oxoacid ferr 28.0 50 0.0017 28.8 4.0 57 104-166 14-71 (118)
116 2xpn_B SPT6, chromatin structu 26.2 28 0.00097 21.7 1.3 12 198-209 3-14 (26)
117 1t0b_A THUA-like protein; treh 26.1 1.8E+02 0.0061 28.9 8.2 73 122-207 34-106 (252)
118 3pzy_A MOG; ssgcid, seattle st 24.4 28 0.00095 32.5 1.7 57 196-253 5-63 (164)
119 2pjk_A 178AA long hypothetical 21.0 19 0.00065 34.1 -0.2 47 195-241 12-65 (178)
No 1
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=100.00 E-value=2.1e-113 Score=994.02 Aligned_cols=586 Identities=41% Similarity=0.750 Sum_probs=510.7
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhc--CCCeEEEEecCCCCCCCCchH
Q 005185 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK--KENIVFFFLATYGDGEPTDNA 179 (710)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~--~~~~~if~~sTyG~G~~pdna 179 (710)
..+++|+|+|||||||||.+|++|++++.+.+ ..++++|+++++.++ +..+. +++.+||++||||+|++|+||
T Consensus 16 ~~~~~i~I~YgS~tGnte~~A~~la~~l~~~g--~~~~v~~~~~~~~~~---l~~~~~~~~~~vi~~~sT~G~G~~pd~~ 90 (618)
T 3qe2_A 16 KTGRNIIVFYGSQTGTAEEFANRLSKDAHRYG--MRGMSADPEEYDLAD---LSSLPEIDNALVVFCMATYGEGDPTDNA 90 (618)
T ss_dssp HHTCSEEEEEECSSSHHHHHHHHHHHHGGGGT--CCEEEECGGGSCGGG---GGGGGGSTTCEEEEEEECBGGGBCCGGG
T ss_pred hcCCeEEEEEECChhHHHHHHHHHHHHHHhCC--CceEEechHHcCHHH---hhhcccccCcEEEEEcCccCCCCCCHHH
Confidence 34578999999999999999999999998776 457899999998754 12222 578999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHH
Q 005185 180 ARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPE 259 (710)
Q Consensus 180 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~ 259 (710)
+.|++||.+.. ..|+|++||||||||++|+|||.++|.++++|+++||++++|+|+||++.+++++|++|++.+|++
T Consensus 91 ~~F~~~L~~~~---~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~~~~~~~~~W~~~l~~~ 167 (618)
T 3qe2_A 91 QDFYDWLQETD---VDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWLA 167 (618)
T ss_dssp HHHHHHHHHCC---CCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcc---ccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccccccCCCcHHHHHHHHHHHHHH
Confidence 99999998742 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCCCCCCCCccccccceEEEEecCCCcc---cCc--cccCCCCCCccccCCCCeeEEEEeeecccCCCCCCc
Q 005185 260 LDNLLRDDDDPTTVSTPYTAAISEYRVVFYDNADAS---VGE--KSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRS 334 (710)
Q Consensus 260 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~ 334 (710)
|.+.++.+... .....+.|+++........ ..+ ......+....|+.++|+.|+|+.|++|+. .++|+
T Consensus 168 l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~n~~Lt~-~~~~~ 240 (618)
T 3qe2_A 168 VCEHFGVEATG------EESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERH 240 (618)
T ss_dssp HHHHHTCCCC---------CCCCSEEEEECTTCCGGGSBCSCCSSTTTTTSCCSCCSSSSCEEEEEEEEEECSC-CSSSC
T ss_pred HHHHhCCCccc------ccccccceeEEecccccccccccccccccccccccCCCcccCCcEEEEEEeEEEcCC-CCCCc
Confidence 99987532211 0112356676654321110 000 000112234567888999999999999985 57899
Q ss_pred EEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCCCCCCCCCCCCCCCCC-cchHHHHHHh
Q 005185 335 CTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTK 413 (710)
Q Consensus 335 ~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~~p-p~tl~~~l~~ 413 (710)
|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++|+.++++...+. ...+.||| |||++++|++
T Consensus 241 ~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~------~~~~~~~p~~~tl~~~l~~ 314 (618)
T 3qe2_A 241 LMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTY 314 (618)
T ss_dssp EEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTT------CSCCSSSSSSEEHHHHHHH
T ss_pred EEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCcc------ccCCCCCCCceEHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999865432 23456899 9999999999
Q ss_pred cccccCCccHHHHHHHHHhCCCHHHHHHHHHhc--CccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCc
Q 005185 414 YADLLSSPKKSALLALAAHASDPTEADRLRHLA--SPAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQ 491 (710)
Q Consensus 414 ~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~--s~~g~~~y~~~i~~~~~~l~dvL~~fps~~~p~~~~l~~i~p~l~ 491 (710)
|+||+++|+|+||+.||+||+|+.||++|++|+ +++|+++|.+|+.+.+++++|||++||++++|+++|++. +|+++
T Consensus 315 ~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~~~p~~~l~~~-lp~l~ 393 (618)
T 3qe2_A 315 YLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQ 393 (618)
T ss_dssp TBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCC
T ss_pred EeecCCCCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHHh-ccccc
Confidence 999999999999999999999999999999999 788999999999999999999999999999999999975 59999
Q ss_pred ccccccCCCC-----ceEEEEEEEEeeCCCCcccCCccchhhhccCC-CCCCCCCceEEEEEecCCCcCCCCCCCCeEEE
Q 005185 492 PRYYSISSSP-----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLP-MEKSNDCSWAPIFVRQSNFKLPADAKVPIIMI 565 (710)
Q Consensus 492 pR~YSIsSsp-----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~-g~~~~~~~~i~v~v~~g~F~lp~~~~~piImI 565 (710)
||+|||||+| +++++|+++.++++.++.+.|+||+||+++.+ |+. .....++|++|.|+|++|.++.+|+|||
T Consensus 394 pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~-~~~~~v~v~~p~g~F~lp~~~~~piimI 472 (618)
T 3qe2_A 394 ARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGEN-GGRALVPMFVRKSQFRLPFKATTPVIMV 472 (618)
T ss_dssp CEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC------CCEEEEEEECCSCCCCSSTTSCEEEE
T ss_pred cceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCC-CcceEEEEEEecCcccCCCCCCCCeEEE
Confidence 9999999998 68999999988888899999999999999988 441 1112689999999999998888999999
Q ss_pred ecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhc
Q 005185 566 GPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMME 645 (710)
Q Consensus 566 a~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~ 645 (710)
|+||||||||||+|++.+....+...++++||||||+++.|++|++||++|.+.+.+++++++|||++..++||||+|.+
T Consensus 473 g~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~~k~yVqd~l~~ 552 (618)
T 3qe2_A 473 GPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQ 552 (618)
T ss_dssp CCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCCCCCcHHHHHHH
Confidence 99999999999999998765554455899999999999559999999999999998889999999998889999999999
Q ss_pred chhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 646 KSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 646 ~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
+.+.+++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 553 ~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~RY~~Dv~ 617 (618)
T 3qe2_A 553 DREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 617 (618)
T ss_dssp THHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEeec
Confidence 99999998878999999999559999999999999999999999999999999999999999999
No 2
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=100.00 E-value=1e-107 Score=956.21 Aligned_cols=582 Identities=33% Similarity=0.608 Sum_probs=500.0
Q ss_pred ccccCCceEEEEEeCCCchHHHHHHHHHHHHH-hhcCCceeEEecCCCCCCcchHHHHhhcCC-CeEEEEecCCCCCCCC
Q 005185 99 EVDDGKQKVTIFFGTQTGTAEGFAKALADEAR-ARYDKAIFKVVDIDDYADEEDEYEEKLKKE-NIVFFFLATYGDGEPT 176 (710)
Q Consensus 99 ~~~~~~~~v~I~YgSqtGtae~~A~~la~~l~-~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~-~~~if~~sTyG~G~~p 176 (710)
..+..+++++|+|||||||||++|++|++++. +.+ ..+.++|+++++.+ ++..+ +.+||++||||+|++|
T Consensus 44 ~~~~~~~ki~IlY~S~tGnte~~A~~ia~~l~~~~g--~~v~v~~l~~~~~~------~l~~~~~~vi~~~sT~G~G~~p 115 (682)
T 2bpo_A 44 VVTENNKNYLVLYASQTGTAEGFAKAFSKELVAKFN--LNVMCADVENYDFE------SLNDVPVIVSIFISTYGEGDFP 115 (682)
T ss_dssp HHHHTTCSEEEEEECSSSHHHHHHHHHHHHHHHHHC--CCEEEEETTSSCGG------GGGGCCSEEEEEEECBTTTBCC
T ss_pred HHhcCCCeEEEEEECCchHHHHHHHHHHHHhHHhcC--CceEEeehHHCCHH------HHhhcCCeEEEEeCccCCCCCC
Confidence 34456789999999999999999999999998 555 45789999999863 46678 9999999999999999
Q ss_pred chHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCC-CchhhHHHHHHH
Q 005185 177 DNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ-CIEDDFSAWREL 255 (710)
Q Consensus 177 dna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~-~~e~~f~~W~~~ 255 (710)
+||..|++||.... ...|++++|||||+||++|+|||.+++.++++|+++||+++.|++++|++. +.+++|++|.++
T Consensus 116 ~~~~~F~~~l~~~~--~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~~~~~~~~~~W~~~ 193 (682)
T 2bpo_A 116 DGAVNFEDFICNAE--AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGAGTTDEDYMAWKDS 193 (682)
T ss_dssp SSCHHHHHHHHTCC--TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEETTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEEecCCcccHHHHHHHHHH
Confidence 99999999998642 235999999999999999999999999999999999999999999999874 789999999999
Q ss_pred HHHHHHhhhCCCCCCCCCCCCccccccceEEEEecC--CCcccCccc---cCC--------CCCCccccCCCCeeEEEEe
Q 005185 256 VWPELDNLLRDDDDPTTVSTPYTAAISEYRVVFYDN--ADASVGEKS---WGN--------ANGHAVYDAQHPCRSNVAV 322 (710)
Q Consensus 256 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~--------~~~~~~~~~~~p~~a~v~~ 322 (710)
||++|.+.+..+... . ...|.+++...+. ......+.. ... .+....|+.++|+.|+|+.
T Consensus 194 l~~~l~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~~ 266 (682)
T 2bpo_A 194 ILEVLKDELHLDEQE-A------KFTSQFQYTVLNEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVK 266 (682)
T ss_dssp HHHHHHHHTTCCCCC-C------CCCCSBCCEECSSCCTTSCSSCSSGGGSTTSCCCCCTTCCBCSCCBTTBCCCEEEEE
T ss_pred HHHHHHhhcCCcccc-c------ccCCcceeEecccCCccccccCccccccccccccccccccccCcccCCCceEEEEEE
Confidence 999999887532211 0 1123344433221 000000000 000 1123457788999999999
Q ss_pred eecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCCCCCCCCCCCCCCCC
Q 005185 323 RKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTF 402 (710)
Q Consensus 323 ~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~~ 402 (710)
+++|+. .++|+|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++|+.|+++..++ ..+.||
T Consensus 267 ~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~--------~~~~p~ 337 (682)
T 2bpo_A 267 SRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDP--------TVKVPF 337 (682)
T ss_dssp EEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSST--------TCCCSS
T ss_pred EEEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEEecCCc--------ccCCCC
Confidence 999998 78999999999999999999999999999999999999999999999999999875432 245689
Q ss_pred C-cchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhCC----CCCC
Q 005185 403 P-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEFP----SAKP 477 (710)
Q Consensus 403 p-p~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL~~fp----s~~~ 477 (710)
| |||++++|++|+||+++|+|+||+.||+||+|++||++|++|+ +|+++|.+|+...++|++|||.+|| ++++
T Consensus 338 p~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~~~~s~~~ 415 (682)
T 2bpo_A 338 PTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSDGAKWDTV 415 (682)
T ss_dssp CSSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHTTCCCTTS
T ss_pred CCCccHHHHHHHhhhccCCCCHHHHHHHHHHCCCHHHHHHHHHhc--cCHHHHHHHHhcCCCCHHHHHHhccCcccccCC
Confidence 9 9999999999999999999999999999999999999999998 6999999999999999999999999 8899
Q ss_pred ChHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEeeCCC---CcccCCccchhhhccCCC------------CCC
Q 005185 478 PLGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEKTPT---GRVHKGLCSTWMKNSLPM------------EKS 537 (710)
Q Consensus 478 p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~~~~---g~~~~G~~S~~L~~l~~g------------~~~ 537 (710)
|++++++. +|+++||+|||||+| .++++|+++.++++. ++.+.|+||+||+++.++ +..
T Consensus 416 p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v 494 (682)
T 2bpo_A 416 PMQFLVES-VPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHY 494 (682)
T ss_dssp CHHHHHHH-SCBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCC
T ss_pred CHHHHHHh-CcccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhcccccccccccccccccce
Confidence 99999865 599999999999998 589999888777765 678899999999987662 111
Q ss_pred C--------CCceEEEEEecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhh------hCCCCCcEEEEEeecCC
Q 005185 538 N--------DCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE------AGAELGPSLLFFGCRNR 603 (710)
Q Consensus 538 ~--------~~~~i~v~v~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~------~~~~~~~~~Lf~G~R~~ 603 (710)
. .+..++++++.+.|++|.++.+|+||||+||||||||||+|++...+. .+...++++||||||++
T Consensus 495 ~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~ 574 (682)
T 2bpo_A 495 DLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNT 574 (682)
T ss_dssp CSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSS
T ss_pred eeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCCh
Confidence 1 013788999989999998888999999999999999999999987654 33345899999999999
Q ss_pred CcccchHHHHHHHH-HcCCCcEEEEEEec-CCCCcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 604 KMDYIYEDELNNFV-QSGALSQLIVAFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 604 ~~D~ly~dEL~~~~-~~~~~~~l~~a~Sr-~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
. |++|++||++|+ +.+.+++++++||| ++..++||||+|.++.+.+++++.++++||||||+++|+++|+++|.+|+
T Consensus 575 ~-D~ly~dEl~~~~~~~g~~~~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~~V~~~L~~i~ 653 (682)
T 2bpo_A 575 D-DFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGIL 653 (682)
T ss_dssp S-SCTTTTTHHHHHHHHGGGEEEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHHHHHHHHHHHH
T ss_pred h-hhhhHHHHHHHHHhcCCceEEEEEECCCCCCCCcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHHHHHHHHHHHH
Confidence 5 999999999995 55778899999999 56679999999999999999988788999999997799999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 682 QEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 682 ~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
+++++++.++|++|+++|+++|||++|||
T Consensus 654 ~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 654 SRGKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 99999999999999999999999999999
No 3
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=100.00 E-value=2.5e-103 Score=919.11 Aligned_cols=582 Identities=31% Similarity=0.586 Sum_probs=490.4
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHH
Q 005185 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (710)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (710)
..+++++|+|||||||||.+|++|++.+. .+ ..+++++|++|+.+ ++..++++||++||||+|+||+|++.
T Consensus 9 ~~~~k~~IlY~S~TG~te~~A~~l~~~l~-~~--~~~~v~~m~~~d~~------~l~~~~~vl~vtsT~G~Gdpp~n~~~ 79 (688)
T 1tll_A 9 AKRVKATILYATETGKSQAYAKTLCEIFK-HA--FDAKAMSMEEYDIV------HLEHEALVLVVTSTFGNGDPPENGEK 79 (688)
T ss_dssp CCSCEEEEEEECSSSHHHHHHHHHHHHHT-TT--SEEEEEETTTSCTT------SGGGCSEEEEEECCBTTTBCCGGGHH
T ss_pred cCCCeEEEEEECCchHHHHHHHHHHHHHh-cC--CCcEEeecccCChh------HhccCceEEEEEcccCCCcCCHHHHH
Confidence 44678999999999999999999999985 33 56899999999864 46788999999999999999999999
Q ss_pred HHHHHHhhcC----------------------------C-----------CCCcCCceEEEEeccCCchHHHHHHHHHHH
Q 005185 182 FYKWFTEQKE----------------------------G-----------GEWLQKLKYGVFGLGNRQYEHFNKIAKVVD 222 (710)
Q Consensus 182 F~~~L~~~~~----------------------------~-----------~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld 222 (710)
|++||.+... + ...|+|++||||||||++|+|||++++.+|
T Consensus 80 F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~ld 159 (688)
T 1tll_A 80 FGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVD 159 (688)
T ss_dssp HHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHHH
T ss_pred HHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchHHHHHHHHHHH
Confidence 9999987620 0 235899999999999999999999999999
Q ss_pred HHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhhhCCCCCCCCC---C---CCc-cccccceEEEEecCCCcc
Q 005185 223 EILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLLRDDDDPTTV---S---TPY-TAAISEYRVVFYDNADAS 295 (710)
Q Consensus 223 ~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~~~~~~~~~~---~---~~~-~~~~~~~~~~~~~~~~~~ 295 (710)
++|+++||+|++|+++||+..+.+++|++|.+.+|++|.+.+......... . .+. ....+.+++.........
T Consensus 160 ~~L~~lGa~rl~~~~~~D~~~g~e~~f~~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (688)
T 1tll_A 160 TLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLISNDRSWKRNKFRLTYVAEAPDL 239 (688)
T ss_dssp HHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-------CCSSSCCTTTEEEEECSCCCCH
T ss_pred HHHHHcCCceeecceeeccCCCcHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcceEEecccccccc
Confidence 999999999999999999987889999999999999998876432211000 0 000 011234555442211000
Q ss_pred cCccccCCCCCCccccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCC-CCccCCCCeeEEccCCCHHHHHHHHHHcC
Q 005185 296 VGEKSWGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLLG 374 (710)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~ 374 (710)
. .....+..++|+.++|+.|++|+.++++|+|+|||||++++ +++|+|||||+|||.|+++.|+++|++||
T Consensus 240 --~------~~~~~~~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~ 311 (688)
T 1tll_A 240 --T------QGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLE 311 (688)
T ss_dssp --H------HHHHHHTTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTCS
T ss_pred --c------ccccccccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCCHHHHHHHHHHhC
Confidence 0 00112455789999999999999999999999999999875 79999999999999999999999999998
Q ss_pred C--CCCceEEEecCCCCCCCCC---CCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCcc
Q 005185 375 L--SPDTYFSLHTDKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPA 449 (710)
Q Consensus 375 l--~~d~~~~i~~~~~~~~~~~---~~~~~~~~pp~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~ 449 (710)
+ ++|+.++++..++..++.+ ....+.+|||||++++|++|+||+++|+|.||+.||+||+|++||++|++|++
T Consensus 312 ~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ek~~L~~l~~-- 389 (688)
T 1tll_A 312 DAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK-- 389 (688)
T ss_dssp SCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--
T ss_pred CCCCCCeEEEEeccccccCCCcccccccccCCCCCccHHHHHHhheeCCCCCCHHHHHHHHHHcCCHHHHHHHHHHhc--
Confidence 6 6789999875322222211 01234577899999999999999999999999999999999999999999986
Q ss_pred CHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEeeCCC--CcccCC
Q 005185 450 GKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEKTPT--GRVHKG 522 (710)
Q Consensus 450 g~~~y~~~i~~~~~~l~dvL~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~~~~--g~~~~G 522 (710)
++++|.+|+...+++++|||.+||++++|+++++.. +|++++|+|||||+| .++++|+++.+.++. |+.+.|
T Consensus 390 ~~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G 468 (688)
T 1tll_A 390 GLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHG 468 (688)
T ss_dssp CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEEC
T ss_pred CHHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHh-CcccceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCC
Confidence 789999999999999999999999999999988865 599999999999997 688999888766554 356789
Q ss_pred ccchhhhccCCCCCCCCCceEEEEEe-cCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhh-hCCCCCcEEEEEee
Q 005185 523 LCSTWMKNSLPMEKSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGC 600 (710)
Q Consensus 523 ~~S~~L~~l~~g~~~~~~~~i~v~v~-~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~-~~~~~~~~~Lf~G~ 600 (710)
+||+||+++.+|+ .+.|+++ .|.|++|.++.+|+||||+|||||||++|++++..... .+...++++|||||
T Consensus 469 ~~S~~L~~l~~Gd------~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~ 542 (688)
T 1tll_A 469 VCSSWLNRIQADD------VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGC 542 (688)
T ss_dssp HHHHHHTTCCTTS------EEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEE
T ss_pred chhHHHHhCCCCC------EEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEe
Confidence 9999999987765 6889996 45899998878999999999999999999999987532 12234789999999
Q ss_pred cCCCcccchHHHHHHHHHcCCCcEEEEEEecCCCC-cccccchhhcc-hhHHhhcc-cCCcEEEEecCchhhHHHHHHHH
Q 005185 601 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTL 677 (710)
Q Consensus 601 R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~-k~yVq~~l~~~-~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L 677 (710)
|+++.|++|++||++|.+.+.+++++++|||++.. ++|||++|.++ ...++.++ ..+++|||||| .+|+++|+++|
T Consensus 543 R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp-~~M~~~V~~~L 621 (688)
T 1tll_A 543 RQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAI 621 (688)
T ss_dssp SCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEE-HHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEEeCC-HHHHHHHHHHH
Confidence 99976899999999999999888999999998764 89999999988 77788766 57899999999 68999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 678 HTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 678 ~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
.++++++|+++.++|++|+++|+.++||++|+|
T Consensus 622 ~~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf 654 (688)
T 1tll_A 622 QRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654 (688)
T ss_dssp HHHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHcCCCCHHHHHHHHHhhhhcCCEEEEec
Confidence 999999999999999999999999999999998
No 4
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=100.00 E-value=5.6e-85 Score=728.02 Aligned_cols=424 Identities=41% Similarity=0.764 Sum_probs=377.1
Q ss_pred ccccceEEEEecCCCcc---cCccc--cCCCCCCccccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCC
Q 005185 279 AAISEYRVVFYDNADAS---VGEKS--WGNANGHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGD 353 (710)
Q Consensus 279 ~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD 353 (710)
..+++|+++.+++.+.. ..+.. ....++..+|+.++||.|+|+.|++|+. .++|+|+||||||++++++|+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD 99 (458)
T 3qfs_A 21 MSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGD 99 (458)
T ss_dssp ---CCEEEEECTTCCGGGCBSSCSSSTTTTTSCCSCCCSSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTC
T ss_pred cceeceEEEEccCccccccccCChhhcccccccCCCCCCCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCC
Confidence 46788999988755422 11211 1334567789999999999999999997 578999999999999999999999
Q ss_pred eeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCCCCCCCCCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHh
Q 005185 354 HVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAH 432 (710)
Q Consensus 354 ~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~~~~~~~~~~p-p~tl~~~l~~~~Dl~~~p~k~~l~~La~~ 432 (710)
||+|||.|+++.|++++++||+++|+.++++..++. ...+.||| |||++++|++|+||+++|+|+||+.||+|
T Consensus 100 ~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~------~~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~ 173 (458)
T 3qfs_A 100 HVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEE------SNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQY 173 (458)
T ss_dssp EEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTT------CSCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGG
T ss_pred EEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCcc------cccCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999864432 23456899 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcC--ccCHHHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCC-----ceEE
Q 005185 433 ASDPTEADRLRHLAS--PAGKDEYAQWIVASQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP-----RIHV 505 (710)
Q Consensus 433 ~~d~~ek~~L~~l~s--~~g~~~y~~~i~~~~~~l~dvL~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~ 505 (710)
|+|+.||++|++|++ ++|+++|.+|+.+.+++++|||++||++++|+++|++. +|+++||+|||||+| .+++
T Consensus 174 a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps~~~p~~~ll~~-lp~l~pR~YSIsSsp~~~~~~i~l 252 (458)
T 3qfs_A 174 ASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCEL-LPRLQARYYSIASSSKVHPNSVHI 252 (458)
T ss_dssp BCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTCTTEEEE
T ss_pred cCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHhh-CCCCcceeEeeccCcccCCCEEEE
Confidence 999999999999987 47899999999999999999999999999999999975 599999999999998 5899
Q ss_pred EEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhh
Q 005185 506 TCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQ 585 (710)
Q Consensus 506 tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~ 585 (710)
+|+++.+++..|+.+.|+||+||+++.++++...+..++|+++.|.|++|.++.+|+||||||||||||+||++++.+..
T Consensus 253 tV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~ 332 (458)
T 3qfs_A 253 CAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLR 332 (458)
T ss_dssp EEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHH
Confidence 99998888888999999999999999987642222368999999999999888899999999999999999999987654
Q ss_pred hhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCCCcccccchhhcchhHHhhcccCCcEEEEecC
Q 005185 586 EAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGD 665 (710)
Q Consensus 586 ~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGp 665 (710)
..+...++++||||||+...|++|++||++|.+.+.+++++++|||++..|+||||+|.++...+|+++.++++||||||
T Consensus 333 ~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp 412 (458)
T 3qfs_A 333 QQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGD 412 (458)
T ss_dssp HHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEE
T ss_pred hcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECC
Confidence 44434578999999999755999999999999999888999999999888999999999999999998888999999999
Q ss_pred chhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 666 AKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 666 a~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 413 ~~~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~~Dvw 457 (458)
T 3qfs_A 413 ARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457 (458)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEEec
Confidence 668999999999999999999999999999999999999999999
No 5
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=100.00 E-value=9e-80 Score=700.09 Aligned_cols=402 Identities=35% Similarity=0.625 Sum_probs=350.4
Q ss_pred CCccccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCC--CceEEE
Q 005185 306 GHAVYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSP--DTYFSL 383 (710)
Q Consensus 306 ~~~~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~--d~~~~i 383 (710)
+..+|+..+|+.++|+.+++|+.++++|+|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++ +..|.+
T Consensus 105 ~~~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~ 184 (539)
T 2qtl_A 105 QVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLL 184 (539)
T ss_dssp --------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEE
T ss_pred ccCCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 456788999999999999999999999999999999999999999999999999999999999999999985 567888
Q ss_pred ecCCCCCCCCCCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcC
Q 005185 384 HTDKEDGTPLGKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQ 462 (710)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~p-p~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~ 462 (710)
+..+.... .+..++++|| |||++++|++|+||+++|+|.||+.||+||+|++||++|.+|++++|+++|.+|+.+.+
T Consensus 185 ~~~~~~~~--~~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~ 262 (539)
T 2qtl_A 185 KIKADTKK--KGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAC 262 (539)
T ss_dssp EECTTCCC--TTCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTT
T ss_pred eccccccC--CCccCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcC
Confidence 76443211 1345788999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEee--CCCCcccCCccchhhhcc----
Q 005185 463 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEK--TPTGRVHKGLCSTWMKNS---- 531 (710)
Q Consensus 463 ~~l~dvL~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~--~~~g~~~~G~~S~~L~~l---- 531 (710)
++++|||++||++++|+++|++. +|+++||+|||||+| .++++|+++.+. +..++.+.|+||+||+++
T Consensus 263 ~~lldvL~~fps~~~p~~~ll~~-lp~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~ 341 (539)
T 2qtl_A 263 ACLLDLLLAFPSCQPPLSLLLEH-LPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASV 341 (539)
T ss_dssp CCHHHHHHHSTTBCCCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTT
T ss_pred CCHHHHHHhCCCcCCCHHHHHHh-CcCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhh
Confidence 99999999999999999999975 599999999999998 689999888664 344567889999999998
Q ss_pred -------CCCCC-CCCCceEEEEEecC-CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhC--CCCCcEEEEEee
Q 005185 532 -------LPMEK-SNDCSWAPIFVRQS-NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG--AELGPSLLFFGC 600 (710)
Q Consensus 532 -------~~g~~-~~~~~~i~v~v~~g-~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~--~~~~~~~Lf~G~ 600 (710)
.+|+. ...+..++|++|.| .|++|.++.+|+||||+||||||||||+|++....+.+ ...++++|||||
T Consensus 342 ~~~~~~~~~Gd~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~ 421 (539)
T 2qtl_A 342 LQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGC 421 (539)
T ss_dssp C--------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEE
T ss_pred ccccccCCCCCccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEE
Confidence 44430 01112688999965 89999888899999999999999999999987654332 234889999999
Q ss_pred cCCCcccchHHHHHHHHHcCCCcEEEEEEecCCC------CcccccchhhcchhHHhhcc-cCCcEEEEecCchhhHHHH
Q 005185 601 RNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP------TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDV 673 (710)
Q Consensus 601 R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~------~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V 673 (710)
|+++.|++|++||++|.+.+.+++++++|||++. .++||||+|.++...+|+++ .++++||||||+++|+++|
T Consensus 422 R~~~~D~ly~dEL~~~~~~g~~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V 501 (539)
T 2qtl_A 422 RHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDV 501 (539)
T ss_dssp SCTTTCCTTHHHHHHHHHTTSSCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCCCcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHHH
Confidence 9995599999999999999998899999999976 68999999999999999988 5689999999955999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 674 HRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 674 ~~~L~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 502 ~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw 538 (539)
T 2qtl_A 502 HDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538 (539)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 9999999999999999999999999999999999999
No 6
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=100.00 E-value=2.8e-77 Score=656.91 Aligned_cols=377 Identities=34% Similarity=0.614 Sum_probs=334.1
Q ss_pred CCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCCCCCCC
Q 005185 314 HPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKEDGTPL 393 (710)
Q Consensus 314 ~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~~~~~~ 393 (710)
.++.|+|+.|++|+.++++|+|+|||||++ ++++|+|||||+|||.|+++.|+++|++||+++++.+.++....
T Consensus 5 ~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~----- 78 (393)
T 4dql_A 5 GAFSTNVVASKELQQPGSARSTRHLEIELP-KEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEE----- 78 (393)
T ss_dssp CCEEEEEEEEEECSCTTCSCCEEEEEEECC-TTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC--------
T ss_pred CcEEEEEEeEEEcCCCCCCceEEEEEEECC-CCCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCC-----
Confidence 577899999999999999999999999997 58999999999999999999999999999999999887753211
Q ss_pred CCCCCCCCCC-cchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHHHhhC
Q 005185 394 GKSTLPPTFP-PCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEVMSEF 472 (710)
Q Consensus 394 ~~~~~~~~~p-p~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dvL~~f 472 (710)
.....|++ |||++++|++ +||+++|+|++|+.||+||+|+.+|++|++|++. ++|.+|+...++|++|||++|
T Consensus 79 --~~~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~f 152 (393)
T 4dql_A 79 --KLAHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKY 152 (393)
T ss_dssp ----------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHC
T ss_pred --ccccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhC
Confidence 11234677 9999999999 9999999999999999999999999999999873 479999999999999999999
Q ss_pred CCCCCChHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEeeCCCCc-ccCCccchhhhccCCCCCCCCCceEEEE
Q 005185 473 PSAKPPLGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPIF 546 (710)
Q Consensus 473 ps~~~p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~~~~g~-~~~G~~S~~L~~l~~g~~~~~~~~i~v~ 546 (710)
|++++|+++|++. +|+++||+|||||+| .++++|+++.+++..|+ .+.|+||+||+++.+|+ .+.++
T Consensus 153 ps~~~p~~~~l~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd------~v~v~ 225 (393)
T 4dql_A 153 PACEMKFSEFIAL-LPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGD------TITCF 225 (393)
T ss_dssp TTCCCCHHHHHHT-SCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTC------EEEEE
T ss_pred CCCCCCHHHHHHh-CCCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcC------EEEEE
Confidence 9999999999975 599999999999998 58999988877665554 45799999999987765 57765
Q ss_pred E--ecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcE
Q 005185 547 V--RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQ 624 (710)
Q Consensus 547 v--~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~ 624 (710)
+ +.|.|++|.++.+|+||||+|||||||+||++++......+...++++||||||++..|++|++||++|.+.+.+ +
T Consensus 226 v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l-~ 304 (393)
T 4dql_A 226 ISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGII-T 304 (393)
T ss_dssp EECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSC-E
T ss_pred EEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCe-E
Confidence 5 468999998888999999999999999999999876655555557899999999964599999999999987765 7
Q ss_pred EEEEEec-CCCCcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 005185 625 LIVAFSR-EGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTG 703 (710)
Q Consensus 625 l~~a~Sr-~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~g 703 (710)
++++||| ++..|+||||++.++...+++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|
T Consensus 305 l~~a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~ 384 (393)
T 4dql_A 305 LHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKG 384 (393)
T ss_dssp EEEEESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 9999999 556899999999999999999888899999999988999999999999999999999999999999999999
Q ss_pred CeEEeeC
Q 005185 704 RYLRDVW 710 (710)
Q Consensus 704 Ry~~DvW 710 (710)
||++|||
T Consensus 385 Ry~~dv~ 391 (393)
T 4dql_A 385 RYAKDVW 391 (393)
T ss_dssp CEEEEEE
T ss_pred CEEEEec
Confidence 9999999
No 7
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=100.00 E-value=1.8e-75 Score=651.38 Aligned_cols=392 Identities=34% Similarity=0.637 Sum_probs=346.0
Q ss_pred cccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCC-CCccCCCCeeEEccCCCHHHHHHHHHHcCC--CCCceEEEec
Q 005185 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGT-GLTYETGDHVGVYCENLSETVEEALSLLGL--SPDTYFSLHT 385 (710)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~-~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l--~~d~~~~i~~ 385 (710)
.|+.++|+.++|+.|++|+.++++|+|+|||||++++ +++|+|||||+|+|.|+++.|+++|++||+ ++|+.++++.
T Consensus 24 ~~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~ 103 (435)
T 1f20_A 24 NVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEM 103 (435)
T ss_dssp HHHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEE
T ss_pred ccccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEec
Confidence 4677899999999999999999999999999999875 799999999999999999999999999976 7799999875
Q ss_pred CCCCCCCCC---CCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcC
Q 005185 386 DKEDGTPLG---KSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQ 462 (710)
Q Consensus 386 ~~~~~~~~~---~~~~~~~~pp~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~ 462 (710)
.+++.++.+ ....+.+|||||++++|++|+||+++|+|.||+.||+||+|++||++|++|++ ++++|.+|+...+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~ 181 (435)
T 1f20_A 104 LEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKN 181 (435)
T ss_dssp EEEESSSTTCEEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHC
T ss_pred cccccCCCCccccccccCCCCCccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhccC
Confidence 322111111 01235678899999999999999999999999999999999999999999986 7899999999999
Q ss_pred CCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEeeCCC--CcccCCccchhhhccCCCC
Q 005185 463 RSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEKTPT--GRVHKGLCSTWMKNSLPME 535 (710)
Q Consensus 463 ~~l~dvL~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~~~~--g~~~~G~~S~~L~~l~~g~ 535 (710)
++++|||.+||++++|+++++.. +|++++|+|||||+| .++++|+++.+.++. |+.+.|.||+||+++.+|+
T Consensus 182 ~~i~~vl~~fps~~~p~~~l~~~-lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd 260 (435)
T 1f20_A 182 PTMVEVLEEFPSIQMPATLLLTQ-LSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADD 260 (435)
T ss_dssp CCHHHHHHHSTTBCBCHHHHHHH-SCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTC
T ss_pred CCHHHHHHhCCcCCCCHHHHHHh-CCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCC
Confidence 99999999999999999999975 599999999999997 688999888666554 3667899999999987765
Q ss_pred CCCCCceEEEEEe-cCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhh-hCCCCCcEEEEEeecCCCcccchHHHH
Q 005185 536 KSNDCSWAPIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQE-AGAELGPSLLFFGCRNRKMDYIYEDEL 613 (710)
Q Consensus 536 ~~~~~~~i~v~v~-~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~-~~~~~~~~~Lf~G~R~~~~D~ly~dEL 613 (710)
.+.|+++ .|.|++|.++.+|+||||||||||||+||++++..... .+...++++||||||+++.|++|++||
T Consensus 261 ------~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El 334 (435)
T 1f20_A 261 ------VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREET 334 (435)
T ss_dssp ------EEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHH
T ss_pred ------EEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHH
Confidence 6889995 56999998878999999999999999999999987431 122347899999999997689999999
Q ss_pred HHHHHcCCCcEEEEEEecCCCC-cccccchhhcc-hhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHH
Q 005185 614 NNFVQSGALSQLIVAFSREGPT-KEYVQHKMMEK-SSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSS 690 (710)
Q Consensus 614 ~~~~~~~~~~~l~~a~Sr~~~~-k~yVq~~l~~~-~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~ 690 (710)
++|.+.+.+++++++|||++.. ++|||++|.++ ...+++++ ..+++|||||| .+|+++|+++|.+++.++++++.+
T Consensus 335 ~~~~~~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp-~~M~~~V~~~L~~i~~~~~~~~~~ 413 (435)
T 1f20_A 335 LQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGD-VTMAADVLKAIQRIMTQQGKLSEE 413 (435)
T ss_dssp HHHHHTTSEEEEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHcCCccEEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCC-hhHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999888999999998754 89999999987 67788776 56899999999 689999999999999999999999
Q ss_pred HHHHHHHHHHHCCCeEEeeC
Q 005185 691 KAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 691 ~a~~~~~~l~~~gRy~~DvW 710 (710)
+|++|+++|+++|||++|||
T Consensus 414 ~a~~~~~~l~~~~RY~~Dv~ 433 (435)
T 1f20_A 414 DAGVFISRLRDDNRYHEDIF 433 (435)
T ss_dssp HHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEec
Confidence 99999999999999999999
No 8
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=100.00 E-value=1.8e-73 Score=623.59 Aligned_cols=362 Identities=31% Similarity=0.581 Sum_probs=330.6
Q ss_pred cccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCC
Q 005185 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (710)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (710)
.|+.++|+.++|+.|++|+.++++|+|+|||||+++++++|+|||||+|+|+|+++.|+++|++||+++|+.+.+.
T Consensus 5 ~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~---- 80 (374)
T 1ddg_A 5 PYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE---- 80 (374)
T ss_dssp CCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET----
T ss_pred CCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC----
Confidence 5778999999999999999999999999999999989999999999999999999999999999999999998874
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005185 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (710)
Q Consensus 389 ~~~~~~~~~~~~~~pp~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 468 (710)
+ .|||++++|++|+||+ +|+|.||+.||+||+|++ |.+|++ +++.|.+|+. +++++|+
T Consensus 81 -~------------~~~tl~~~l~~~~di~-~p~~~~l~~la~~~~~~~----L~~l~~--~~~~~~~~~~--~~~~~~v 138 (374)
T 1ddg_A 81 -G------------KTLPLNEALQWHFELT-VNTANIVENYATLTRSET----LLPLVG--DKAKLQHYAA--TTPIVDM 138 (374)
T ss_dssp -T------------EEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTT----TGGGTT--CTHHHHHHHH--HSCHHHH
T ss_pred -C------------CCccHHHHHHhcccCC-CCCHHHHHHHHHHCCCHH----HHHHhc--ChHHHHHHHc--CCCHHHH
Confidence 1 1799999999999999 899999999999999974 888874 7889999987 5899999
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCC-----ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCce
Q 005185 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP-----RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSW 542 (710)
Q Consensus 469 L~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp-----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~ 542 (710)
|.+||+ ++++|||+.+. +++++|+|||||+| .++++|+++.+++. |+.+.|+||+||++ +.+|+ .
T Consensus 139 l~~~p~-~~~~Gq~v~l~-~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd------~ 209 (374)
T 1ddg_A 139 VRFSPA-QLDAEALINLL-RPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEG------E 209 (374)
T ss_dssp HHHSCC-CCCHHHHHHHS-CBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSSC------E
T ss_pred HHHCCC-CCCHHHHHhhc-cCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCCC------E
Confidence 999999 99999999764 78999999999997 58899988866554 67788999999999 76665 6
Q ss_pred EEEEEe-cCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCC
Q 005185 543 APIFVR-QSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA 621 (710)
Q Consensus 543 i~v~v~-~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~ 621 (710)
+.|.++ .|.|++|.++.+|+||||+|||||||+||++++...+. .++++||||||+++.|++|++||+++.+.+.
T Consensus 210 v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~----~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~ 285 (374)
T 1ddg_A 210 VRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEA----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGV 285 (374)
T ss_dssp EEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCHHHHCTTHHHHHHHHHTTS
T ss_pred EEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCC----CCCEEEEEEeCCchhhhhHHHHHHHHHHhCC
Confidence 889885 56899998788999999999999999999999987542 2789999999998449999999999999998
Q ss_pred CcEEEEEEecCCCCcccccchhhcchhHHhhcccCCcEEEEec-CchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005185 622 LSQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCG-DAKSMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQ 700 (710)
Q Consensus 622 ~~~l~~a~Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCG-pa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~ 700 (710)
+++++++|||++..++|||++|.++.+.+++++.++++||||| | ++|+++|+++|.++++++++++.++|++|+++|+
T Consensus 286 ~~~l~~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p-~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~ 364 (374)
T 1ddg_A 286 LTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDA-NRMAKDVEQALLEVIAEFGGMDTEAADEFLSELR 364 (374)
T ss_dssp CCEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECT-TTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8899999999988899999999998888998887799999999 6 8999999999999999999999999999999999
Q ss_pred HCCCeEEeeC
Q 005185 701 MTGRYLRDVW 710 (710)
Q Consensus 701 ~~gRy~~DvW 710 (710)
++|||++|||
T Consensus 365 ~~~Ry~~dv~ 374 (374)
T 1ddg_A 365 VERRYQRDVY 374 (374)
T ss_dssp HTTCEEEEEC
T ss_pred HCCCeEEecC
Confidence 9999999999
No 9
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=2.5e-36 Score=322.71 Aligned_cols=268 Identities=24% Similarity=0.463 Sum_probs=217.0
Q ss_pred cccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCC
Q 005185 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (710)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (710)
.++..+|+.++|+.+++++..+++++++||+|+.++. +.|+||++|.|++.|.. .
T Consensus 31 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~------------------------~ 85 (314)
T 1fnb_A 31 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE-IPYREGQSVGVIPDGED------------------------K 85 (314)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-CCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC-CCcCCCCEEEEecCCCC------------------------c
Confidence 4556778899999999999877778999999998764 89999999999876521 0
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005185 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (710)
Q Consensus 389 ~~~~~~~~~~~~~~pp~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 468 (710)
+|
T Consensus 86 ------------------------------------------------------------~g------------------ 87 (314)
T 1fnb_A 86 ------------------------------------------------------------NG------------------ 87 (314)
T ss_dssp ------------------------------------------------------------TS------------------
T ss_pred ------------------------------------------------------------CC------------------
Confidence 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCC--------ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCC
Q 005185 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP--------RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDC 540 (710)
Q Consensus 469 L~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp--------~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~ 540 (710)
.+..+|+|||+|+| .++++|+.+.+.+..|+.+.|.||+||+++.+|+
T Consensus 88 -------------------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd----- 143 (314)
T 1fnb_A 88 -------------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGA----- 143 (314)
T ss_dssp -------------------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTC-----
T ss_pred -------------------CcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCC-----
Confidence 02368999999987 3667776655555566667899999999987765
Q ss_pred ceEEEEEecCCCc-CCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCC-CCCcEEEEEeecCCCcccchHHHHHHHHH
Q 005185 541 SWAPIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGA-ELGPSLLFFGCRNRKMDYIYEDELNNFVQ 618 (710)
Q Consensus 541 ~~i~v~v~~g~F~-lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~-~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~ 618 (710)
.+.|.+|.|+|. +|.+..+|+||||+|||||||++|++++......+. ..++++||||||+.+ |++|.+||+++.+
T Consensus 144 -~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~el~~l~~ 221 (314)
T 1fnb_A 144 -EVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 221 (314)
T ss_dssp -EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGG-GCCSHHHHHHHHH
T ss_pred -EEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHH-HhhhHHHHHHHHH
Confidence 688899988864 565557899999999999999999999875431111 126799999999987 9999999999988
Q ss_pred cCC-CcEEEEEEecCCC----CcccccchhhcchhHHhhccc-CCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHH
Q 005185 619 SGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLS-EGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKA 692 (710)
Q Consensus 619 ~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l~-~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a 692 (710)
.+. .+++++++||++. .++||+++|.+....+++.+. .++.||+||| ++|+++|++.|.+++.+.| . +|
T Consensus 222 ~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-~---~~ 296 (314)
T 1fnb_A 222 KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAAEG-I---DW 296 (314)
T ss_dssp HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C---CH
T ss_pred hCCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECC-HHHHHHHHHHHHHHHHHhC-c---hH
Confidence 765 6789999999753 478999999887767766553 6789999999 8999999999999998765 2 57
Q ss_pred HHHHHHHHHCCCeEEeeC
Q 005185 693 ESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 693 ~~~~~~l~~~gRy~~DvW 710 (710)
++|+++|+++|||++|||
T Consensus 297 ~~~~~~l~~~~r~~~d~~ 314 (314)
T 1fnb_A 297 IEYKRQLKKAEQWNVEVY 314 (314)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHCCcEEEecC
Confidence 899999999999999999
No 10
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=6.7e-36 Score=317.73 Aligned_cols=269 Identities=26% Similarity=0.462 Sum_probs=216.0
Q ss_pred cccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCC
Q 005185 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (710)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (710)
.|+...|+.++|+.+++++..+++++++|++|++++..+.|+||+++.|+++|.. .
T Consensus 15 ~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 70 (304)
T 2bmw_A 15 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD------------------------K 70 (304)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC------------------------T
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc------------------------c
Confidence 4556788999999999999888888999999999866789999999999887621 0
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005185 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (710)
Q Consensus 389 ~~~~~~~~~~~~~~pp~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 468 (710)
+|
T Consensus 71 ------------------------------------------------------------~g------------------ 72 (304)
T 2bmw_A 71 ------------------------------------------------------------NG------------------ 72 (304)
T ss_dssp ------------------------------------------------------------TS------------------
T ss_pred ------------------------------------------------------------cC------------------
Confidence 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCC--------ceEEEEEEEEeeCC-CCcccCCccchhhhccCCCCCCCC
Q 005185 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP--------RIHVTCALVYEKTP-TGRVHKGLCSTWMKNSLPMEKSND 539 (710)
Q Consensus 469 L~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp--------~i~~tv~~v~~~~~-~g~~~~G~~S~~L~~l~~g~~~~~ 539 (710)
.+.++|+|||+|+| .++++|+.+.+.++ .+..+.|.||+||+++.+|+
T Consensus 73 -------------------~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd---- 129 (304)
T 2bmw_A 73 -------------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGS---- 129 (304)
T ss_dssp -------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTC----
T ss_pred -------------------CCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCC----
Confidence 01368999999986 36676665444332 24446799999999987765
Q ss_pred CceEEEEEecCCC-cCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhh--C---CCCCcEEEEEeecCCCcccchHHHH
Q 005185 540 CSWAPIFVRQSNF-KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA--G---AELGPSLLFFGCRNRKMDYIYEDEL 613 (710)
Q Consensus 540 ~~~i~v~v~~g~F-~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~--~---~~~~~~~Lf~G~R~~~~D~ly~dEL 613 (710)
.+.|.+|.|.| .+|.+..+|+||||+|||||||++|++++...... + ...++++||||||+.+ |++|.+||
T Consensus 130 --~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el 206 (304)
T 2bmw_A 130 --EVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEEL 206 (304)
T ss_dssp --EEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHHH
T ss_pred --EEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChH-hcchHHHH
Confidence 68888998875 46655678999999999999999999998754311 0 0136899999999986 99999999
Q ss_pred HHHHHcCC-CcEEEEEEecCCC----CcccccchhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCC
Q 005185 614 NNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 687 (710)
Q Consensus 614 ~~~~~~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~ 687 (710)
+++.+.+. .+++++++||++. .++|||+++.+..+.+++++ ..++.||+||| ++|+++|+++|.+++.+.| +
T Consensus 207 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~~~~~g-~ 284 (304)
T 2bmw_A 207 EEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGP-PPMEEGIDAALSAAAAKEG-V 284 (304)
T ss_dssp HHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-TTHHHHHHHHHHHHHHTTT-C
T ss_pred HHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c
Confidence 99988764 6789999999853 47899999988777777655 35789999999 8999999999999998764 4
Q ss_pred CHHHHHHHHHHHHHCCCeEEeeC
Q 005185 688 DSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 688 ~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
+ +++++++|+++|||++|||
T Consensus 285 ~---~~~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 285 T---WSDYQKDLKKAGRWHVETY 304 (304)
T ss_dssp C---HHHHHHHHHHTTCEEEEEC
T ss_pred c---HHHHHHHHHHcCCeEEecC
Confidence 3 6789999999999999999
No 11
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=7.9e-35 Score=321.37 Aligned_cols=269 Identities=26% Similarity=0.444 Sum_probs=217.4
Q ss_pred cccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCC
Q 005185 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (710)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (710)
.|+...|+.++|+.+++++...++++++||+|++++..+.|+||+||.|.++|.. .
T Consensus 116 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~------------------------~ 171 (402)
T 2b5o_A 116 IYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED------------------------K 171 (402)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE------------------------T
T ss_pred cccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC------------------------c
Confidence 3566788999999999999877888999999998765689999999999776411 0
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005185 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (710)
Q Consensus 389 ~~~~~~~~~~~~~~pp~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 468 (710)
+|
T Consensus 172 ------------------------------------------------------------~g------------------ 173 (402)
T 2b5o_A 172 ------------------------------------------------------------NG------------------ 173 (402)
T ss_dssp ------------------------------------------------------------TT------------------
T ss_pred ------------------------------------------------------------CC------------------
Confidence 00
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCC--------ceEEEEEEEEeeCC-CCcccCCccchhhhccCCC-CCCC
Q 005185 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP--------RIHVTCALVYEKTP-TGRVHKGLCSTWMKNSLPM-EKSN 538 (710)
Q Consensus 469 L~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp--------~i~~tv~~v~~~~~-~g~~~~G~~S~~L~~l~~g-~~~~ 538 (710)
.+..+|+|||+|+| .++++|+.+.+.++ .++.+.|.||+||+++.+| +
T Consensus 174 -------------------~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d--- 231 (402)
T 2b5o_A 174 -------------------KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTD--- 231 (402)
T ss_dssp -------------------EECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCC---
T ss_pred -------------------CccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCc---
Confidence 01368999999987 26677665444332 2445689999999998776 5
Q ss_pred CCceEEEEEecCCC-cCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhC-CCCCcEEEEEeecCCCcccchHHHHHHH
Q 005185 539 DCSWAPIFVRQSNF-KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNF 616 (710)
Q Consensus 539 ~~~~i~v~v~~g~F-~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~ 616 (710)
.+.|.+|.|+| .+|.+..+|+||||+|||||||++|++++......+ ...++++||||||+.+ |++|.+||+++
T Consensus 232 ---~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~~l 307 (402)
T 2b5o_A 232 ---DVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA-NILYKDDFEKM 307 (402)
T ss_dssp ---CEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGG-GCTTHHHHHHH
T ss_pred ---eEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHH-HhHHHHHHHHH
Confidence 57888998886 566556789999999999999999999987543111 1136899999999987 99999999999
Q ss_pred HHcCC-CcEEEEEEecCCC----CcccccchhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHH
Q 005185 617 VQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSS 690 (710)
Q Consensus 617 ~~~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~ 690 (710)
.+.+. .+++++++||++. .++|||++|.+..+.+++++ ..++.||+||| ++|+++|++.|.+++.+.+.
T Consensus 308 ~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP-~~M~~~v~~~L~~~g~~~g~---- 382 (402)
T 2b5o_A 308 AAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGL-KGMQPPIDETFTAEAEKRGL---- 382 (402)
T ss_dssp HHHCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEEC-GGGHHHHHHHHHHHHHHTTC----
T ss_pred HHhCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHHHhccCCcEEEEECC-HHHHHHHHHHHHHHHHHcCc----
Confidence 98775 6789999999753 57899999998877777766 35789999999 89999999999999988764
Q ss_pred HHHHHHHHHHHCCCeEEeeC
Q 005185 691 KAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 691 ~a~~~~~~l~~~gRy~~DvW 710 (710)
.+++++++|+++|||++|||
T Consensus 383 ~~~~~~~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 383 NWEEMRRSMKKEHRWHVEVY 402 (402)
T ss_dssp CHHHHHHHHHHTTCEEEEEC
T ss_pred hHHHHHHHHHHCCCEEEecC
Confidence 57889999999999999999
No 12
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=1.3e-34 Score=308.88 Aligned_cols=221 Identities=26% Similarity=0.468 Sum_probs=183.3
Q ss_pred ChHHHHHHhcCC-------CcccccccCCCC--------ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCce
Q 005185 478 PLGVFFAAIVPR-------LQPRYYSISSSP--------RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSW 542 (710)
Q Consensus 478 p~~~~l~~i~p~-------l~pR~YSIsSsp--------~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~ 542 (710)
.+|||+.+.+|. +.+|+|||+|+| .++++|+.+.+.+..|+.+.|.||+||+++.+|+ .
T Consensus 67 ~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~ 140 (310)
T 3vo2_A 67 REGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA------D 140 (310)
T ss_dssp CTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTC------E
T ss_pred cCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCC------E
Confidence 568888655443 258999999997 3677777665556667777899999999987765 6
Q ss_pred EEEEEecCCCc-CCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhC-CCCCcEEEEEeecCCCcccchHHHHHHHHHcC
Q 005185 543 APIFVRQSNFK-LPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAG-AELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 620 (710)
Q Consensus 543 i~v~v~~g~F~-lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~-~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~ 620 (710)
+.|.+|.|.|. +|.+..+|+||||+|||||||++|++++....... ...++++||||||+.+ |++|.+||+++.+.+
T Consensus 141 v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~ 219 (310)
T 3vo2_A 141 VKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSD-SLLYKEELEKMKEMA 219 (310)
T ss_dssp EEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGG-GCCSHHHHHHHHHHC
T ss_pred EEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChh-hcccHHHHHHHHHhC
Confidence 88889988755 56556789999999999999999999987543211 1136899999999997 999999999999887
Q ss_pred C-CcEEEEEEecCCC----CcccccchhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 005185 621 A-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAES 694 (710)
Q Consensus 621 ~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~ 694 (710)
+ .+++++++||++. .++|||+++.+....+++++ .+++.||+||| ++|+++|+++|.+++.+.+ + ++++
T Consensus 220 ~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp-~~M~~~v~~~L~~~~~~~g-~---~~~~ 294 (310)
T 3vo2_A 220 PDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYMCGL-KGMEKGIDDIMLNLAAKDG-I---DWMQ 294 (310)
T ss_dssp TTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEES-TTHHHHHHHHHHHHHHHTT-C---CHHH
T ss_pred CCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhcccCCcEEEEeCC-HHHHHHHHHHHHHHHHHcC-c---CHHH
Confidence 5 6799999999864 57899999999888888776 36899999999 8999999999999998865 3 5889
Q ss_pred HHHHHHHCCCeEEeeC
Q 005185 695 MVKNLQMTGRYLRDVW 710 (710)
Q Consensus 695 ~~~~l~~~gRy~~DvW 710 (710)
|+++|+++|||++|||
T Consensus 295 ~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 295 YKKQLKKGEQWNVEVY 310 (310)
T ss_dssp HHHHHHHTTSEEEEEC
T ss_pred HHHHHHHCCceEEecC
Confidence 9999999999999999
No 13
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=1.5e-33 Score=300.97 Aligned_cols=272 Identities=22% Similarity=0.351 Sum_probs=207.4
Q ss_pred ccCCCCeeEEEEeeecccCCCCCCc---------EEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCce
Q 005185 310 YDAQHPCRSNVAVRKELHTPSSDRS---------CTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTY 380 (710)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~---------~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~ 380 (710)
+....|+.++|+.+++|+...++++ ++||+|+.++..+.|+||++|.|+++|....
T Consensus 16 ~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~--------------- 80 (314)
T 2rc5_A 16 FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPE--------------- 80 (314)
T ss_dssp BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHH---------------
T ss_pred CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccc---------------
Confidence 4456788999999999997766666 9999999876668999999999988764210
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHh
Q 005185 381 FSLHTDKEDGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVA 460 (710)
Q Consensus 381 ~~i~~~~~~~~~~~~~~~~~~~pp~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~ 460 (710)
+. | . .+
T Consensus 81 ---------g~------------~-----------------~---------------------~~--------------- 86 (314)
T 2rc5_A 81 ---------KK------------A-----------------K---------------------GL--------------- 86 (314)
T ss_dssp ---------HH------------H-----------------T---------------------TC---------------
T ss_pred ---------cC------------c-----------------c---------------------ch---------------
Confidence 00 0 0 00
Q ss_pred cCCCHHHHHhhCCCCCCChHHHHHHhcCCCcccccccCCCC--------ceEEEEEEEEeeCCCCcc-cCCccchhhhcc
Q 005185 461 SQRSLLEVMSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP--------RIHVTCALVYEKTPTGRV-HKGLCSTWMKNS 531 (710)
Q Consensus 461 ~~~~l~dvL~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp--------~i~~tv~~v~~~~~~g~~-~~G~~S~~L~~l 531 (710)
.+| ++.+|+|||+|+| .++++|+++.+.++.|+. +.|.+|+||+++
T Consensus 87 ---------~~~----------------~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l 141 (314)
T 2rc5_A 87 ---------ADV----------------GYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDL 141 (314)
T ss_dssp ---------SCC----------------BCCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTC
T ss_pred ---------hhc----------------CCCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcC
Confidence 011 1578999999986 356666554332333433 479999999997
Q ss_pred CCCCCCCCCceEEEEEecCCCc-CCC-CCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccch
Q 005185 532 LPMEKSNDCSWAPIFVRQSNFK-LPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIY 609 (710)
Q Consensus 532 ~~g~~~~~~~~i~v~v~~g~F~-lp~-~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly 609 (710)
.+|+ .+.|.+|.|+|. +|. +..+|+||||+|||||||++|++++..... ....++++||||||+.+ |++|
T Consensus 142 ~~Gd------~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~-~~~~~~v~l~~g~r~~~-d~~~ 213 (314)
T 2rc5_A 142 KPGD------EVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKL-IKFTGNITLVYGAPYSD-ELVM 213 (314)
T ss_dssp CTTC------EEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCS-SCBCSCEEEEEEESSGG-GSCS
T ss_pred CCcC------EEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhcc-cCCCCcEEEEEEeCCHH-HHhH
Confidence 7765 688889988865 454 457899999999999999999999875421 11236899999999997 9999
Q ss_pred HHHHHHHHHcCCCcEEEEEEecCCC-----CcccccchhhcchhHHhhcc-cCCcEEEEe-cCchhhHHHHHHHHHHHHH
Q 005185 610 EDELNNFVQSGALSQLIVAFSREGP-----TKEYVQHKMMEKSSDIWNML-SEGAYLYVC-GDAKSMARDVHRTLHTIVQ 682 (710)
Q Consensus 610 ~dEL~~~~~~~~~~~l~~a~Sr~~~-----~k~yVq~~l~~~~~~v~~~l-~~~~~iyvC-Gpa~~M~~~V~~~L~~i~~ 682 (710)
.+||+++.+++..+++++++||++. .++|||+++.+..+.+++.+ ..++ +|+| || ++|+++|++.|.+++.
T Consensus 214 ~~el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~~~~-~yvCGGp-~~m~~~v~~~L~~~g~ 291 (314)
T 2rc5_A 214 MDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRVREQAEAVKKILNGGGR-FYICGGP-KGMEKGVIEEIQKISG 291 (314)
T ss_dssp HHHHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHHHHHTHHHHHHHHHHTCE-EEEEESS-TTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHHHHHhHHHHHHHhhcCCe-EEEeCCc-HHHHHHHHHHHHHHHh
Confidence 9999999876557789999999743 46899999988766666655 3344 4999 99 8999999999999865
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCeEEeeC
Q 005185 683 EQGSLDSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 683 ~~~~~~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
.++ .++.|+++|+++|||++|||
T Consensus 292 --~~i---~~e~f~~~l~~~gr~~~e~~ 314 (314)
T 2rc5_A 292 --NTG---TYEEFKHHLEGAHQLFVETY 314 (314)
T ss_dssp --CCS---CHHHHHHHHHHTTCEEEEEC
T ss_pred --ccc---hHHHHHHHHHHCCCEEEecC
Confidence 233 46789999999999999999
No 14
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=100.00 E-value=7.6e-34 Score=285.82 Aligned_cols=153 Identities=31% Similarity=0.472 Sum_probs=139.1
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHH
Q 005185 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (710)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (710)
..+++|+|+|||||||||.+|++|++.+. ++ ..++++++++++.+ ++..++.+||++||||+|+||+||+.
T Consensus 38 ~~~~kv~IlYgS~tGnte~~A~~La~~l~-~g--~~v~v~~l~~~~~~------~l~~~~~vI~~tsTyG~Ge~Pdna~~ 108 (219)
T 3hr4_A 38 ASRVRVTILFATETGKSEALAWDLGALFS-CA--FNPKVVCMDKYRLS------CLEEERLLLVVTSTFGNGDCPGNGEK 108 (219)
T ss_dssp HTSCEEEEEEECSSSHHHHHHHHHHHHHT-TT--SEEEEEEGGGCCGG------GGGTCSEEEEEEECBTTTBCCGGGHH
T ss_pred hcCCcEEEEEECCchHHHHHHHHHHHHHH-cC--CCeEEEEcccCCHh------HhccCCeEEEEEeccCCCcCCHHHHH
Confidence 34678999999999999999999999884 43 56789999999853 47789999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHH
Q 005185 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (710)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (710)
|+++|.... ..+++++||||||||++|++||.+++.++++|+++||++++|+|+||++.+.+++|++|+++||++|.
T Consensus 109 F~~~L~~~~---~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~~D~~~~~e~~~~~W~~~l~~~l~ 185 (219)
T 3hr4_A 109 LKKSLFMLK---ELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELSGQEDAFRSWAVQTFKAAC 185 (219)
T ss_dssp HHHHHHHCC---CCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc---hhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEEEecCCCcHHHHHHHHHHHHHHHH
Confidence 999998642 35899999999999999999999999999999999999999999999988899999999999999999
Q ss_pred hhhCC
Q 005185 262 NLLRD 266 (710)
Q Consensus 262 ~~~~~ 266 (710)
+.++.
T Consensus 186 ~~~~~ 190 (219)
T 3hr4_A 186 ETFDV 190 (219)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 98864
No 15
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=2.5e-33 Score=298.88 Aligned_cols=222 Identities=28% Similarity=0.454 Sum_probs=176.4
Q ss_pred CChHHHHHHhcCC---------CcccccccCCCC--------ceEEEEEEEEeeCC-C---CcccCCccchhhhccCCCC
Q 005185 477 PPLGVFFAAIVPR---------LQPRYYSISSSP--------RIHVTCALVYEKTP-T---GRVHKGLCSTWMKNSLPME 535 (710)
Q Consensus 477 ~p~~~~l~~i~p~---------l~pR~YSIsSsp--------~i~~tv~~v~~~~~-~---g~~~~G~~S~~L~~l~~g~ 535 (710)
..+|||+.+.+|. ..+|+|||+|+| .++++|+.+.+..+ . ++.+.|.+|+||+++.+|+
T Consensus 61 ~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd 140 (311)
T 3lo8_A 61 YWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGD 140 (311)
T ss_dssp CCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTC
T ss_pred ccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcC
Confidence 4578888665554 268999999998 25666654322111 1 1236799999999987765
Q ss_pred CCCCCceEEEEEecCCCcCCC--CCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCC-CCcEEEEEeecCCCcccchHHH
Q 005185 536 KSNDCSWAPIFVRQSNFKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAE-LGPSLLFFGCRNRKMDYIYEDE 612 (710)
Q Consensus 536 ~~~~~~~i~v~v~~g~F~lp~--~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~-~~~~~Lf~G~R~~~~D~ly~dE 612 (710)
.+.|.+|.|.|.+.+ +..+|+||||+|||||||++|++++......+.. .++++||||||+.+ |++|.+|
T Consensus 141 ------~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~e 213 (311)
T 3lo8_A 141 ------KIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEE 213 (311)
T ss_dssp ------EEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHHH
T ss_pred ------EEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChH-HhhHHHH
Confidence 688889989876543 3578999999999999999999998764321111 25799999999997 9999999
Q ss_pred HHHHHHcCC-CcEEEEEEecCCC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCC
Q 005185 613 LNNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSL 687 (710)
Q Consensus 613 L~~~~~~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~ 687 (710)
|+++.+.+. .+++++++||++. .++||++.+.+....+++++..++.||+||| ++|+++|++.|.+++.+.+
T Consensus 214 l~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~~~~~g-- 290 (311)
T 3lo8_A 214 FTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGL-KGMMPGIQDTLKKVAERRG-- 290 (311)
T ss_dssp HHHHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEEC-GGGHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECC-HHHHHHHHHHHHHHHHhcc--
Confidence 999998875 6789999999864 4789999999887777776667899999999 8999999999999998765
Q ss_pred CHHHHHHHHHHHHHCCCeEEeeC
Q 005185 688 DSSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 688 ~~~~a~~~~~~l~~~gRy~~DvW 710 (710)
.++++|+++|+++|||++|||
T Consensus 291 --~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 291 --ESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp --CCHHHHHHHHHHTTCEEEEEC
T ss_pred --HHHHHHHHHHHHCCcEEEecC
Confidence 368899999999999999999
No 16
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=99.98 E-value=1.6e-31 Score=285.80 Aligned_cols=288 Identities=23% Similarity=0.367 Sum_probs=203.7
Q ss_pred cccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCCCHHHHHHHHHHcCCCCCceEEEecCCC
Q 005185 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCENLSETVEEALSLLGLSPDTYFSLHTDKE 388 (710)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~~~i~~~~~ 388 (710)
.|...+|+.++|+.+.+|+.+.....++||+|+.. ..+.|.+|..++|.|+..+..=+ . +. . ...
T Consensus 9 ~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~GQ~~~i~~~~~~~~~~-----~----~~--~---~~~ 73 (316)
T 3jqq_A 9 LYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHN-GLFKYLEGHTCGIIPYYNELDNN-----P----NN--Q---INK 73 (316)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECT-TCCCCCTTCEEEECTTCC--------------------------
T ss_pred eecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCC-CCcceecCcEeEEECCCcccccc-----c----cc--c---ccc
Confidence 46788999999999999998888889999999985 46999999999999986543200 0 00 0 000
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHhcccccCCccHHHHHHHHHhCCCHHHHHHHHHhcCccCHHHHHHHHHhcCCCHHHH
Q 005185 389 DGTPLGKSTLPPTFPPCSLRTALTKYADLLSSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWIVASQRSLLEV 468 (710)
Q Consensus 389 ~~~~~~~~~~~~~~pp~tl~~~l~~~~Dl~~~p~k~~l~~La~~~~d~~ek~~L~~l~s~~g~~~y~~~i~~~~~~l~dv 468 (710)
+++ ++-+++.+ .+ ..++
T Consensus 74 ~~~----------------------~~~~~~~~---------------------~h------------------~~~~-- 90 (316)
T 3jqq_A 74 DHN----------------------IINTTNHT---------------------NH------------------NNIA-- 90 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc----------------------cccccccc---------------------cc------------------cccc--
Confidence 000 00000000 00 0000
Q ss_pred HhhCCCCCCChHHHHHHhcCCCcccccccCCCC---ceEEEEEEEEeeC---CCCcccCCccchhhhccCCCCCCCCCce
Q 005185 469 MSEFPSAKPPLGVFFAAIVPRLQPRYYSISSSP---RIHVTCALVYEKT---PTGRVHKGLCSTWMKNSLPMEKSNDCSW 542 (710)
Q Consensus 469 L~~fps~~~p~~~~l~~i~p~l~pR~YSIsSsp---~i~~tv~~v~~~~---~~g~~~~G~~S~~L~~l~~g~~~~~~~~ 542 (710)
...+-+...+|+|||||+| .++++|+++.+.. ..++.+.|.||+||.++.+|+ .
T Consensus 91 --------------~~~~~g~~~~R~ySIaS~p~~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd------~ 150 (316)
T 3jqq_A 91 --------------LSHIKKQRCARLYSISSSNNMENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKIND------D 150 (316)
T ss_dssp --------------------CCCCEEEEBCSCTTSSSEEEEEECCBC---------CCBCHHHHHHHTCCTTC------E
T ss_pred --------------cccCCCcccceeeecccCCCCCeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCC------E
Confidence 0012246789999999999 5777776543221 123457899999999888765 6
Q ss_pred EEEEEecCCCcCCCC---CCCCeEEEecCCcchHHHHHHHHHHHhhhh------CCCCCcEEEEEeecCCCcccchHHHH
Q 005185 543 APIFVRQSNFKLPAD---AKVPIIMIGPGTGLAPFRGFLQERFALQEA------GAELGPSLLFFGCRNRKMDYIYEDEL 613 (710)
Q Consensus 543 i~v~v~~g~F~lp~~---~~~piImIa~GTGIAPfrs~l~~~~~~~~~------~~~~~~~~Lf~G~R~~~~D~ly~dEL 613 (710)
+.|.+|.|.|.++.+ ..+|+||||+|||||||+||++++...... +...++++||||||+.+ |++|.+||
T Consensus 151 v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL 229 (316)
T 3jqq_A 151 IYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLNEL 229 (316)
T ss_dssp EEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGG-GCTTHHHH
T ss_pred EEEEecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHH-HhhcHHHH
Confidence 888999999999876 378999999999999999999998764321 01237899999999997 99999999
Q ss_pred HHHHHcCC-CcEEEEEEecCCC---CcccccchhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCC
Q 005185 614 NNFVQSGA-LSQLIVAFSREGP---TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLD 688 (710)
Q Consensus 614 ~~~~~~~~-~~~l~~a~Sr~~~---~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~ 688 (710)
+++.+... .+++++++||++. .++|||+.+.+....+++++ ..++.||+||| ++|+++|++.|.+.. .++
T Consensus 230 ~~l~~~~~~~~~~~~~~s~~~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP-~~m~~~v~~~l~~~G----~~~ 304 (316)
T 3jqq_A 230 EYFQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGK-KSIRYKVMDILKSHD----QFD 304 (316)
T ss_dssp HHHHHHCTTTEEEEEEEGGGCC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEEC-STHHHHHHHHHHC--------C
T ss_pred HHHHHhCCCcEEEEEEECCCcccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCC-HHHHHHHHHHHHHcC----CCc
Confidence 99998765 6789999999853 67999999999887777766 46899999999 899999988876543 232
Q ss_pred HHHHHHHHHHHHHCCCeEEeeC
Q 005185 689 SSKAESMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 689 ~~~a~~~~~~l~~~gRy~~DvW 710 (710)
. ...+|++.|+|
T Consensus 305 ~----------v~~~rih~E~f 316 (316)
T 3jqq_A 305 E----------KKKKRVHVEVY 316 (316)
T ss_dssp H----------HHHTTEEEEEC
T ss_pred c----------cccccEEEEeC
Confidence 2 34567888775
No 17
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.95 E-value=9.6e-28 Score=237.96 Aligned_cols=148 Identities=30% Similarity=0.632 Sum_probs=130.5
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHH
Q 005185 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (710)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (710)
..+++++|+|+|+|||||++|+.|++.+.+.+ ..++++|++++. .++..++.+||++||| +|++|+++..
T Consensus 19 ~~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g--~~v~v~~l~~~~-------~~l~~~d~vi~g~~Ty-~G~~p~~~~~ 88 (191)
T 1bvy_F 19 AHNTPLLVLYGSNMGTAEGTARDLADIAMSKG--FAPQVATLDSHA-------GNLPREGAVLIVTASY-NGHPPDNAKQ 88 (191)
T ss_dssp --CCCEEEEEECSSSHHHHHHHHHHHHHHTTT--CCCEEEEGGGST-------TCCCSSSEEEEEECCB-TTBCCTTTHH
T ss_pred cCCCeEEEEEECCChHHHHHHHHHHHHHHhCC--CceEEeeHHHhh-------hhhhhCCeEEEEEeec-CCCcCHHHHH
Confidence 34688999999999999999999999998765 457888988752 2477899999999999 9999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHH
Q 005185 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPEL 260 (710)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L 260 (710)
|+++|.... ...|++++|+|||+||++| ++||.+++.++++|+++||+++.|.+++|++.+.+++|.+|.+.||+.|
T Consensus 89 fl~~L~~~~--~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~~d~~~d~e~~~~~w~~~l~~~l 166 (191)
T 1bvy_F 89 FVDWLDQAS--ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDV 166 (191)
T ss_dssp HHHHHHTCC--SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--chhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEEEecCCChHHHHHHHHHHHHHHh
Confidence 999997542 2358999999999999999 6999999999999999999999999999886677777999999999999
Q ss_pred H
Q 005185 261 D 261 (710)
Q Consensus 261 ~ 261 (710)
.
T Consensus 167 ~ 167 (191)
T 1bvy_F 167 A 167 (191)
T ss_dssp H
T ss_pred c
Confidence 6
No 18
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.93 E-value=5.1e-26 Score=220.86 Aligned_cols=151 Identities=30% Similarity=0.424 Sum_probs=129.4
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHH
Q 005185 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (710)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (710)
..|++++|+|+|+||||+++|+.|++.+.+.+ ..++++++++++. .++.+++.+||++||||.|++|+++..
T Consensus 7 ~~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~ii~g~pt~g~G~~p~~~~~ 78 (167)
T 1ykg_A 7 AEMPGITIISASQTGNARRVAEALRDDLLAAK--LNVKLVNAGDYKF------KQIASEKLLIVVTSTQGEGEPPEEAVA 78 (167)
T ss_dssp -----CEEEEECSSSHHHHHHHHHHHHHHHHT--CCCEEEEGGGCCG------GGGGGCSEEEEEEECBGGGBCCGGGHH
T ss_pred CCCCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEeehhhCCH------HHhccCCeEEEEEcccCCCcCChhHHH
Confidence 34678999999999999999999999998765 4578889988764 347789999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHH
Q 005185 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELD 261 (710)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~ 261 (710)
|+++|.... ...+++++|+|||+||++|+|||.+++.++++|+++|++++.+.+.+| ...++++.+|.+++++.|.
T Consensus 79 f~~~l~~~~--~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~~d--~~~~~~~~~w~~~l~~~l~ 154 (167)
T 1ykg_A 79 LHKFLFSKK--APKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDAD--VEYQAAASEWRARVVDALK 154 (167)
T ss_dssp HHHHHTSTT--CCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--ccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecceecC--CCcHHHHHHHHHHHHHHHH
Confidence 999997531 235899999999999999999999999999999999999999998887 3568899999999999987
Q ss_pred hhh
Q 005185 262 NLL 264 (710)
Q Consensus 262 ~~~ 264 (710)
...
T Consensus 155 ~~~ 157 (167)
T 1ykg_A 155 SRA 157 (167)
T ss_dssp TCC
T ss_pred hhc
Confidence 554
No 19
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.92 E-value=4.5e-26 Score=216.27 Aligned_cols=144 Identities=26% Similarity=0.296 Sum_probs=125.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..+.++++.+ . .++.+++.+||++||||+|++|+++..|+
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~--~------~~l~~~d~vi~g~pt~g~g~~p~~~~~f~ 70 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEAG--FTTETLHGPL--L------EDLPASGIWLVISSTHGAGDIPDNLSPFY 70 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHTT--CCEEEECCTT--S------CSSCSEEEEEEECCTTTTCCTTSSCHHHH
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCC--CceEEecCCC--H------HHcccCCeEEEEECccCCCCCChhHHHHH
Confidence 468999999999999999999999998765 3456666532 2 24678899999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHHHHHHH
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (710)
++|.... ..+++++|+|||+||++|+|||.+++.++++|+++|++++.+.+.+|... +.++++.+|.+++++.|
T Consensus 71 ~~l~~~~---~~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 71 EALQEQK---PDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp HHHHHHC---CCTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred HHHHhhc---cccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence 9998631 24889999999999999999999999999999999999999999988753 56788999999999876
No 20
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.91 E-value=1.7e-24 Score=223.24 Aligned_cols=180 Identities=18% Similarity=0.268 Sum_probs=142.4
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhh-ccCCCCCCCCCceEEEEEec
Q 005185 476 KPPLGVFFAAIVPR-LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 476 ~~p~~~~l~~i~p~-l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~i~v~v~~ 549 (710)
...+|||+.+.+|. ..+|+|||+|+| .++++|+ +...|.+|+||+ ++.+|+ .+.|.+|.
T Consensus 43 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~~~~l~i~vk---------~~~~G~~s~~l~~~l~~Gd------~v~v~gP~ 107 (250)
T 1tvc_A 43 KFEPGQFMDLTIPGTDVSRSYSPANLPNPEGRLEFLIR---------VLPEGRFSDYLRNDARVGQ------VLSVKGPL 107 (250)
T ss_dssp SCCSCCEEEECTTSCSSSEEECCBCCSSSSCCEEEEEC---------CCTTSSSHHHHHHHSSSSS------EEEEEEEE
T ss_pred CcCCCcEEEEEeCCCccccccccCCCCCCCCeEEEEEE---------ECCCCCchHHHHhcCCCCC------EEEEEcCc
Confidence 34678988765565 578999999998 3444442 224699999996 777765 68889999
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|+|.++.+..+++||||+|||||||++|++++...+. ..+++||||+|+.+ |++|.+||+++.+....+++++++
T Consensus 108 G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 182 (250)
T 1tvc_A 108 GVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTA----PNETRIYFGVNTEP-ELFYIDELKSLERSMRNLTVKACV 182 (250)
T ss_dssp CCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHTC----CSCEEEEEECSSST-TCCCHHHHHHHHHHSSSCEEEECC
T ss_pred cccccCccCCceEEEEEeccCHHHHHHHHHHHHhcCC----CceEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEEe
Confidence 9999886656899999999999999999999876531 26899999999998 999999999998766677899999
Q ss_pred ecCCC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 630 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 630 Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
||++. .++||++.+.+. +.+. ..+..+|+||| ++|+++|++.|.+.
T Consensus 183 s~~~~~~~g~~g~v~~~l~~~---~~~~-~~~~~vyvCGp-~~m~~~v~~~l~~~ 232 (250)
T 1tvc_A 183 WHPSGDWEGEQGSPIDALRED---LESS-DANPDIYLCGP-PGMIDAACELVRSR 232 (250)
T ss_dssp SSCSSCCSSSSSSSSHHHHHH---HHHS-SSSSEEEEESS-HHHHHHHHHHHHHH
T ss_pred ccCCCCcCCccceehHHHHhh---hhcc-cCCcEEEEeCC-HHHHHHHHHHHHHc
Confidence 98532 467888877643 2221 24689999999 89999999988754
No 21
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.91 E-value=1.3e-24 Score=228.86 Aligned_cols=177 Identities=18% Similarity=0.358 Sum_probs=133.9
Q ss_pred CcccccccCCCC----ceEEEEEEEEe--eCC-C---CcccCCccchhhhccCCCCCCCCCceEEEEEecCCCcCCCCCC
Q 005185 490 LQPRYYSISSSP----RIHVTCALVYE--KTP-T---GRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNFKLPADAK 559 (710)
Q Consensus 490 l~pR~YSIsSsp----~i~~tv~~v~~--~~~-~---g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F~lp~~~~ 559 (710)
..+|+|||+|+| .++++|++... .+. . .+...|.+|+||+++.+|+ .+.|.+|.|+|.++. ..
T Consensus 84 ~~~R~ySi~s~~~~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd------~v~v~gP~G~f~~~~-~~ 156 (290)
T 2r6h_A 84 ETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGD------KVMMSGPYGDFHIQD-TD 156 (290)
T ss_dssp CEEEEEECCSCTTCCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTC------EEEEEEEECCCCCCS-SS
T ss_pred CcceeeeccCCCCCCCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCC------EEEEEecccCCcCCC-CC
Confidence 568999999998 35555443210 000 0 1245799999999977765 688899999999863 56
Q ss_pred CCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecCCC-----
Q 005185 560 VPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSREGP----- 634 (710)
Q Consensus 560 ~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~----- 634 (710)
+|+||||+|||||||++|+++++.... ...+++||||||+.+ |++|.+||+++.+.+..+++++++||+..
T Consensus 157 ~~~vliagGtGitP~~s~l~~~~~~~~---~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~ 232 (290)
T 2r6h_A 157 AEMLYIGGGAGMAPLRAQILHLFRTLK---TGRKVSYWYGARSKN-EIFYEEDFREIEREFPNFKFHIALSDPQPEDNWT 232 (290)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHTSC---CCSCEEEEEEESSGG-GCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCCC
T ss_pred CeEEEEECccCHHHHHHHHHHHHHhcC---CCCcEEEEEEcCCHH-HHHHHHHHHHHHHhCCCeEEEEEEccCCcccCCC
Confidence 899999999999999999998876421 226899999999997 99999999999887777899999998642
Q ss_pred -CcccccchhhcchhHHhhcc-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 635 -TKEYVQHKMMEKSSDIWNML-SEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 635 -~k~yVq~~l~~~~~~v~~~l-~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
.++||++.+.+.. +.+.. ..++.+|+||| ++|+++|++.|.+.
T Consensus 233 g~~g~v~~~~~~~~--l~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 277 (290)
T 2r6h_A 233 GYVGFIHQVIYDNY--LKDHDAPEDIEYYMCGP-GPMANAVKGMLENL 277 (290)
T ss_dssp SCBSCHHHHHHHHT--TTTCSCGGGEEEEEECC-HHHHHHHHHHHHHH
T ss_pred CeeEecCHHHHHhH--HhhccCcCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 3678887764321 11111 24678999999 89999999998765
No 22
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.91 E-value=2.9e-24 Score=218.75 Aligned_cols=178 Identities=17% Similarity=0.208 Sum_probs=137.5
Q ss_pred CCChHHHHHHhcCCCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchh-hhccCCCCCCCCCceEEEEEecC
Q 005185 476 KPPLGVFFAAIVPRLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTW-MKNSLPMEKSNDCSWAPIFVRQS 550 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~-L~~l~~g~~~~~~~~i~v~v~~g 550 (710)
...+|||+.+.+|...+|+|||+|+| .++++|+++ ..|.+|+| +.++.+|+ .+.|.+|.|
T Consensus 29 ~~~pGq~v~l~~~~~~~R~ySi~s~~~~~~~l~l~i~~~---------~~G~~s~~~~~~l~~Gd------~v~v~gP~G 93 (232)
T 1qfj_A 29 SFRAGQYLMVVMDERDKRPFSMASTPDEKGFIELHIGAS---------EINLYAKAVMDRILKDH------QIVVDIPHG 93 (232)
T ss_dssp CCCTTCEEEEESSSSCEEEEECCSCTTSTTCEEEEEC---------------CCHHHHHHHHHHS------EEEEEEEEC
T ss_pred CcCCCCEEEEECCCCceeeeecCCCCCCCCcEEEEEEEc---------cCCchhHHHHHhCCCCC------EEEEeCCcc
Confidence 44679998776677789999999998 455555432 24666775 66666655 688899999
Q ss_pred CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005185 551 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 630 (710)
Q Consensus 551 ~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 630 (710)
+|.++.+..++++|||+|||||||+++++++...+. ..+++||||+|+.+ |++|.+||+++.+++..++++.++|
T Consensus 94 ~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~s 168 (232)
T 1qfj_A 94 EAWLRDDEERPMILIAGGTGFSYARSILLTALARNP----NRDITIYWGGREEQ-HLYDLCELEALSLKHPGLQVVPVVE 168 (232)
T ss_dssp SCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHCT----TCCEEEEEEESSGG-GCTTHHHHHHHHHHCTTEEEEEEES
T ss_pred ceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcCC----CCcEEEEEeeCCHH-HhhhHHHHHHHHHHCCCeEEEEEEc
Confidence 999876667899999999999999999999886532 26899999999997 9999999999988777788999999
Q ss_pred cCCC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHH-HH
Q 005185 631 REGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTL-HT 679 (710)
Q Consensus 631 r~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L-~~ 679 (710)
+++. .++|+++.+.+.. .+ ..+..+|+||| ++|+++|++.| .+
T Consensus 169 ~~~~~~~g~~g~v~~~~~~~~---~~--~~~~~vyvCGp-~~m~~~v~~~l~~~ 216 (232)
T 1qfj_A 169 QPEAGWRGRTGTVLTAVLQDH---GT--LAEHDIYIAGR-FEMAKIARDLFCSE 216 (232)
T ss_dssp SCCTTCCSEESCHHHHHHHHC---SC--CTTCEEEEESC-HHHHHHHHHHHHHH
T ss_pred CCCCCcCCceeeHHHHHHHhc---CC--ccccEEEEECC-HHHHHHHHHHHHHH
Confidence 8653 3578877665421 11 24688999999 89999999888 54
No 23
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.90 E-value=2.9e-24 Score=220.38 Aligned_cols=181 Identities=18% Similarity=0.258 Sum_probs=138.6
Q ss_pred CChHHHHHHhcC---CCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEec
Q 005185 477 PPLGVFFAAIVP---RLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 477 ~p~~~~l~~i~p---~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~ 549 (710)
..+|||+.+.+| ....|+|||+|+| .++++|+ +...|.+|+||+++.+|+ .+.|.+|.
T Consensus 42 ~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~~~~~~l~vk---------~~~~G~~S~~l~~l~~Gd------~v~v~gP~ 106 (243)
T 2eix_A 42 LPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIK---------VYEKGQMSQYIDHLNPGD------FLQVRGPK 106 (243)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEE---------CCTTCHHHHHHHTCCTTC------EEEEEEEE
T ss_pred cCCceEEEEEEeeCCCEEEeeeeecCCCCCCCEEEEEEE---------EcCCCCcchHhhcCCCCC------EEEEECCe
Confidence 467888865544 2357999999997 3444443 223699999999887765 68888999
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|+|.++.+..++++|||+|||||||++|++++..... ...+++||||+|+.+ |++|.+||+++.+++..+++++++
T Consensus 107 G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~---~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 182 (243)
T 2eix_A 107 GQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPK---EKTIINLIFANVNED-DILLRTELDDMAKKYSNFKVYYVL 182 (243)
T ss_dssp CSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTT---CCCEEEEEEEEEEGG-GCTTHHHHHHHHHHCTTEEEEEEE
T ss_pred EEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCC---CCcEEEEEEEcCCHH-HhhHHHHHHHHHHHCCCeEEEEEe
Confidence 9999887666899999999999999999999875321 126899999999997 999999999998877677899999
Q ss_pred ecCCC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 630 SREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 630 Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
|++.. .++||++.+.+. +......+..+|+||| ++|+++|++.|.+.
T Consensus 183 s~~~~~~~g~~g~v~~~~l~~---~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~ 233 (243)
T 2eix_A 183 NNPPAGWTGGVGFVSADMIKQ---HFSPPSSDIKVMMCGP-PMMNKAMQGHLETL 233 (243)
T ss_dssp EECCTTCCSEESSCCHHHHHH---HSCCTTSSEEEEEESS-HHHHHHHHHHHHHH
T ss_pred CCCCccccCcCCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHc
Confidence 98542 357887643221 1111124578999999 89999999988754
No 24
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.90 E-value=4.3e-24 Score=219.70 Aligned_cols=184 Identities=18% Similarity=0.224 Sum_probs=141.0
Q ss_pred CCChHHHHHHhcCC---CcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEE-Ee
Q 005185 476 KPPLGVFFAAIVPR---LQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-VR 548 (710)
Q Consensus 476 ~~p~~~~l~~i~p~---l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~-v~ 548 (710)
...+|||+.+.+|. ..+|+|||+|+| .++++++. ...|.+|+||+++.+|+ .+.|. +|
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~~~l~~~v~~---------~~~G~~s~~l~~l~~Gd------~v~v~~gP 94 (248)
T 1fdr_A 30 PFTAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYLVT---------VPDGKLSPRLAALKPGD------EVQVVSEA 94 (248)
T ss_dssp CCCTTCEEEEEECC---CEEEEEECCSCTTCSSEEEEEEC---------CTTCSSHHHHHTCCTTC------EEEEESSC
T ss_pred CcCCCCcEEEEccCCCCeeeeeecccCCCCCCcEEEEEEE---------eCCCchhhHHHhCCCcC------EEEEecCC
Confidence 45689998766552 467999999998 35544432 24699999999887765 57888 78
Q ss_pred cCCCcCCCCC-CCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcC-CCcEEE
Q 005185 549 QSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG-ALSQLI 626 (710)
Q Consensus 549 ~g~F~lp~~~-~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~-~~~~l~ 626 (710)
.|.|.++.+. .++++|||+|||||||+++++++...+ ...+++||||+|+.+ |++|.+||+++.++. ..++++
T Consensus 95 ~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 169 (248)
T 1fdr_A 95 AGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD----RFKNLVLVHAARYAA-DLSYLPLMQELEKRYEGKLRIQ 169 (248)
T ss_dssp BCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT----TCSEEEEEEEESSGG-GCTTHHHHHHHHHHTTTSEEEE
T ss_pred cceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC----CCCcEEEEEEcCCHH-HhhHHHHHHHHHHhCcCcEEEE
Confidence 8999987553 689999999999999999999875422 126899999999997 999999999998754 356888
Q ss_pred EEEecCCC---Ccccccchhhcch-hHHhhc-c-cCCcEEEEecCchhhHHHHHHHH-HHH
Q 005185 627 VAFSREGP---TKEYVQHKMMEKS-SDIWNM-L-SEGAYLYVCGDAKSMARDVHRTL-HTI 680 (710)
Q Consensus 627 ~a~Sr~~~---~k~yVq~~l~~~~-~~v~~~-l-~~~~~iyvCGpa~~M~~~V~~~L-~~i 680 (710)
+++|+++. .+++|++.+.+.. ...... . ..+..+|+||| ++|+++|++.| .+.
T Consensus 170 ~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp-~~m~~~v~~~l~~~~ 229 (248)
T 1fdr_A 170 TVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGN-PQMVRDTQQLLKETR 229 (248)
T ss_dssp EEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCC-HHHHHHHHHHHHHHc
Confidence 99998764 3688888876542 222111 2 35689999999 89999999988 654
No 25
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.90 E-value=6.7e-24 Score=201.17 Aligned_cols=142 Identities=23% Similarity=0.295 Sum_probs=123.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhc-CCCeEEEEecCCCC--CCCCchHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLK-KENIVFFFLATYGD--GEPTDNAA 180 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~-~~~~~if~~sTyG~--G~~pdna~ 180 (710)
|++++|+|+|+||||+.+|+.|++.+.+.+ ..++++|+++++.+ ++. +++.+||++||||+ |++|+++.
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~~------~l~~~~d~ii~g~pty~~~~G~~p~~~~ 72 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGG--HEVTLLNAADASAE------NLADGYDAVLFGCSAWGMEDLEMQDDFL 72 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTT--CEEEEEETTTBCCT------TTTTTCSEEEEEECEECSSSCEECHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCC--CeEEEEehhhCCHh------HhcccCCEEEEEecccCCCCCCCcHHHH
Confidence 578999999999999999999999998765 56889999988753 467 89999999999998 99999999
Q ss_pred HHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCC--CCCchhhHHHHHHHHHH
Q 005185 181 RFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWP 258 (710)
Q Consensus 181 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~ 258 (710)
.|+++|... .+++++|+|||+||+.|.+||.+++.++++|+++|++++.+....+. +. ..+.+.+|.++|+.
T Consensus 73 ~fl~~l~~~-----~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~-~~~~~~~~~~~l~~ 146 (148)
T 3f6r_A 73 SLFEEFDRI-----GLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLKMEGDASN-DPEAVASFAEDVLK 146 (148)
T ss_dssp HHHTTGGGT-----CCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEEEESSGGG-CHHHHHHHHHHHHH
T ss_pred HHHHHhhcc-----CCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceEeecCcch-HHHHHHHHHHHHHh
Confidence 999998753 48999999999999999999999999999999999999988666554 23 66788899888765
Q ss_pred H
Q 005185 259 E 259 (710)
Q Consensus 259 ~ 259 (710)
.
T Consensus 147 ~ 147 (148)
T 3f6r_A 147 Q 147 (148)
T ss_dssp T
T ss_pred h
Confidence 3
No 26
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.90 E-value=2.7e-24 Score=224.81 Aligned_cols=190 Identities=17% Similarity=0.217 Sum_probs=138.8
Q ss_pred CChHHHHHHhcC---CCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEec
Q 005185 477 PPLGVFFAAIVP---RLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 477 ~p~~~~l~~i~p---~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~ 549 (710)
..+|||+.+.+| ...+|+|||+|+| .++++|+++...+..+....|.+|+||+++.+|+ .+.|.+|.
T Consensus 47 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~ 120 (275)
T 1umk_A 47 LPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGD------TIEFRGPS 120 (275)
T ss_dssp CCTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTC------EEEEEEEE
T ss_pred CCCCcEEEEEEeeCCcEEEeccccCCccCCCCeEEEEEEEeccCcccccCCCChhHHHHhcCCCCC------EEEEEcCc
Confidence 457888865433 2468999999987 4666655432222222235699999999887765 67888888
Q ss_pred CCCcC--------CCC--------CCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHH
Q 005185 550 SNFKL--------PAD--------AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDEL 613 (710)
Q Consensus 550 g~F~l--------p~~--------~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL 613 (710)
|.|.+ +.+ ..+++||||+|||||||++|++++.... ...++++||||+|+.+ |++|.+||
T Consensus 121 G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~---~~~~~v~l~~~~r~~~-d~~~~~el 196 (275)
T 1umk_A 121 GLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDP---DDHTVCHLLFANQTEK-DILLRPEL 196 (275)
T ss_dssp CSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCT---TCCCEEEEEEEESSGG-GCTTHHHH
T ss_pred cceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhCC---CCCcEEEEEEEcCCHH-HhhHHHHH
Confidence 88754 321 3578999999999999999999987531 1236899999999987 99999999
Q ss_pred HHHHHcCC-CcEEEEEEecCCC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHH-HHHHHHHHH
Q 005185 614 NNFVQSGA-LSQLIVAFSREGP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMAR-DVHRTLHTI 680 (710)
Q Consensus 614 ~~~~~~~~-~~~l~~a~Sr~~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~-~V~~~L~~i 680 (710)
+++.+++. .+++++++|+++. .++||++.+.+. .......++.+|+||| ++|++ +|++.|.+.
T Consensus 197 ~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~v~~~L~~~ 265 (275)
T 1umk_A 197 EELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGP-PPMIQYACLPNLDHV 265 (275)
T ss_dssp HHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESC-HHHHHHTTHHHHHHH
T ss_pred HHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHH---hcCCCCCCeEEEEECC-HHHHHHHHHHHHHHc
Confidence 99987654 5688899998653 357787654321 1111124689999999 89999 899988765
No 27
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.90 E-value=1.4e-23 Score=215.22 Aligned_cols=180 Identities=17% Similarity=0.297 Sum_probs=138.2
Q ss_pred CCChHHHHHHhcCCC-----cccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhh-ccCCCCCCCCCceEEEE
Q 005185 476 KPPLGVFFAAIVPRL-----QPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 546 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l-----~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~i~v~ 546 (710)
...+|||+.+.+|.- ++|+|||+|+| .++++|+. ...++...|.+|+||+ ++.+|+ .+.|.
T Consensus 33 ~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~~~~~~i~vk~----~~~~~~~~G~~S~~l~~~l~~G~------~v~v~ 102 (243)
T 4eh1_A 33 DYQPGQYIGIEVTPEGSDYREIRQYSLSHASNGREYRISVKR----EGVGSDNPGLVSHYLHNNVKVGD------SVKLY 102 (243)
T ss_dssp CCCTTCEEEEEECCSSCSSCEEEEEEBCSCCCSSCEEEEEEC----TTTTSSSCCHHHHHHHHHCCTTC------EEEEE
T ss_pred CcCCCCEEEEEEecCCCccccceeeEeccCCCCCeEEEEEEE----eecCCCCCCeehhHHHhcCCCCC------EEEEE
Confidence 345799987665532 46999999998 45544332 1122335799999997 576665 68889
Q ss_pred EecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEE
Q 005185 547 VRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLI 626 (710)
Q Consensus 547 v~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~ 626 (710)
+|.|.|.++ +..+|+||||+|||||||++|++++..... ..++|+||+|+.+ |++|.+||+++.+.+ .++++
T Consensus 103 gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~-----~~v~l~~~~r~~~-~~~~~~el~~l~~~~-~~~~~ 174 (243)
T 4eh1_A 103 APAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK-----SGVTYLYACNSAK-EHTFAQETAQLIAQQ-GWMQQ 174 (243)
T ss_dssp EEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC-----CSEEEEEEESSGG-GCTTHHHHHHHHHHH-TCEEE
T ss_pred ccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC-----CeEEEEEEeCChh-hhhHHHHHHHHHHhC-CeEEE
Confidence 999999988 567899999999999999999999886432 2399999999997 999999999998877 66899
Q ss_pred EEEecCCCC---cccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 627 VAFSREGPT---KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 627 ~a~Sr~~~~---k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
+++|++... +++++..+. .+-..+..||+||| ++|+++|++.|.+..
T Consensus 175 ~~~s~~~~~~~~~g~~~~~~~-------~~~~~~~~vyvCGp-~~m~~~v~~~l~~~g 224 (243)
T 4eh1_A 175 VWYRDESADDVLQGEMQLAEL-------ILPIEDGDFYLCGP-IGFMQYVVKQLLALG 224 (243)
T ss_dssp EEESSCCCTTCEESSCCCTTS-------CCCTTTCEEEEEEC-HHHHHHHHHHHHHHT
T ss_pred EEEccCCCcccccCCccHHHe-------eccCCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 999986542 455554433 11135789999999 899999999998654
No 28
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.89 E-value=1.9e-24 Score=225.62 Aligned_cols=201 Identities=17% Similarity=0.207 Sum_probs=146.8
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEE-Ee
Q 005185 476 KPPLGVFFAAIVP---RLQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-VR 548 (710)
Q Consensus 476 ~~p~~~~l~~i~p---~l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~-v~ 548 (710)
...+|||+.+.+| ....|+|||+|+| .+.+++. +...|.+|+||+++.+|+ .+.|. +|
T Consensus 46 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~~v~---------~~~~G~~s~~l~~l~~Gd------~v~v~~gP 110 (271)
T 4fk8_A 46 RFNNGEFTMVGLEVDGKPLTRAYSIVSPNYEEHLEFFSI---------KVQNGPLTSRLQHLKVGD------PVLIGKKP 110 (271)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTTSSSEEEEEE---------CCTTCTTHHHHTTCCTTC------EEEEESCC
T ss_pred CcCCCCEEEEEccCCCceeeeeEeccCCCCCCcEEEEEE---------EECCCchhhHHhcCCCCC------EEEEecCC
Confidence 3467999876555 2357999999998 4444332 224699999999887765 68888 89
Q ss_pred cCCCcCCC-CCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCC------
Q 005185 549 QSNFKLPA-DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGA------ 621 (710)
Q Consensus 549 ~g~F~lp~-~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~------ 621 (710)
.|+|.++. +..++++|||+|||||||+++++++...... .+++|+||+|+.+ |++|.+||+++.+++.
T Consensus 111 ~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~----~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 185 (271)
T 4fk8_A 111 TGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERF----DKVVLTHTCRLKG-ELAYMDYIKHDLPGHEYLGDVI 185 (271)
T ss_dssp BCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHHC----SEEEEEECCCSHH-HHHHHHHHHTCCTTCTTHHHHH
T ss_pred CcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCCC----CCEEEEEecCCHH-HHhHHHHHHHHHHhCccccccc
Confidence 99998875 3568999999999999999999998765432 6899999999997 9999999999877654
Q ss_pred --CcEEEEEEecCCC-CcccccchhhcchhHHhh-----cccCCcEEEEecCchhhHHHHHHHHHHHHHHhCCCCHHHHH
Q 005185 622 --LSQLIVAFSREGP-TKEYVQHKMMEKSSDIWN-----MLSEGAYLYVCGDAKSMARDVHRTLHTIVQEQGSLDSSKAE 693 (710)
Q Consensus 622 --~~~l~~a~Sr~~~-~k~yVq~~l~~~~~~v~~-----~l~~~~~iyvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~ 693 (710)
.+++++++|+++. .++++++.+.+.. .+.. ...+++.+|+||| ++|+++|++.|.+.......
T Consensus 186 ~~~~~~~~~~s~~~~~~~G~v~~~~~~~~-l~~~~~~~~~~~~~~~v~vCGp-~~m~~~v~~~l~~~gv~~~~------- 256 (271)
T 4fk8_A 186 REKLVYYPTVTREEFENEGRITDLIASGK-LFTDLDMPPFSPEQDRVMLCGS-TAMLKDTTELLKKAGLVEGK------- 256 (271)
T ss_dssp HHHEEEEECC-------CCHHHHHHHHSH-HHHHTTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHTTCCBCB-------
T ss_pred cceEEEEEEecCCccccccccChHHhcch-hhhhcccccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCchhh-------
Confidence 3578888888764 4678888765421 1111 1235789999999 89999999999766544332
Q ss_pred HHHHHHHHCCCeEEeeC
Q 005185 694 SMVKNLQMTGRYLRDVW 710 (710)
Q Consensus 694 ~~~~~l~~~gRy~~DvW 710 (710)
+...|+|..|.|
T Consensus 257 -----i~~~~~~~~E~y 268 (271)
T 4fk8_A 257 -----NSAPGHYVIERA 268 (271)
T ss_dssp -----TTBCBSEEEEES
T ss_pred -----cCCCCcEEEEEe
Confidence 233777777765
No 29
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.89 E-value=3.6e-23 Score=227.71 Aligned_cols=177 Identities=15% Similarity=0.246 Sum_probs=136.9
Q ss_pred CChHHHHHHhcCC-----CcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEE
Q 005185 477 PPLGVFFAAIVPR-----LQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 547 (710)
Q Consensus 477 ~p~~~~l~~i~p~-----l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v 547 (710)
..+|||+.+.+|. ..+|+|||+|+| .++++|+. ...|.+|+||++ +.+|+ .+.|.+
T Consensus 183 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~~~~~~i~Vk~---------~~~G~~S~~L~~~l~~Gd------~v~v~g 247 (396)
T 1gvh_A 183 YRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYRIAVKR---------EEGGQVSNWLHNHANVGD------VVKLVA 247 (396)
T ss_dssp CCTTCEEEEEECCTTCSSCEEEEEECCSCCCSSCEEEEEEC---------CTTCHHHHHHHHTCCTTC------EEEEEE
T ss_pred CCCCCeEEEEecCCCCccceeecceeccCCCCCeEEEEEEE---------cCCCcchHHHHhcCCCCC------EEEEEc
Confidence 3578888765552 358999999998 45544431 136999999997 76665 688999
Q ss_pred ecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEE
Q 005185 548 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 627 (710)
Q Consensus 548 ~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 627 (710)
|.|.|.++.+..+|+||||+|||||||++|++++...+. .++++||||+|+.+ |++|++||++++++++.+++++
T Consensus 248 P~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 322 (396)
T 1gvh_A 248 PAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGH----TAQVNWFHAAENGD-VHAFADEVKELGQSLPRFTAHT 322 (396)
T ss_dssp EECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTC----CSCEEEEEEESCTT-TCCSHHHHHHHHHTSSSEEEEE
T ss_pred CCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCC----CCcEEEEEEeCCHH-HhhhHHHHHHHHHHCCCeEEEE
Confidence 999999976667899999999999999999999876532 26899999999998 9999999999998887788999
Q ss_pred EEecCCCC---------cccccchhhcchhHHhhc-ccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 628 AFSREGPT---------KEYVQHKMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 628 a~Sr~~~~---------k~yVq~~l~~~~~~v~~~-l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
++|+++.. +++++..+ +.+. ...++.+|+||| ++|+++|++.|.+.
T Consensus 323 ~~s~~~~~~~~~~~~~~~G~~~~~~------l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~ 378 (396)
T 1gvh_A 323 WYRQPSEADRAKGQFDSEGLMDLSK------LEGAFSDPTMQFYLCGP-VGFMQFTAKQLVDL 378 (396)
T ss_dssp EESSCCHHHHHHTCCSEESSCCGGG------SSSCCCCTTCEEEEESC-HHHHHHHHHHHHHT
T ss_pred EECCCCccccccCccCccCcCCHHH------HhhccCCCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 99987531 23443321 1111 113789999999 89999999988754
No 30
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.89 E-value=3e-23 Score=223.52 Aligned_cols=178 Identities=23% Similarity=0.298 Sum_probs=141.4
Q ss_pred CCChHHHHHHhcCC-CcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhh-ccCCCCCCCCCceEEEEEecC
Q 005185 476 KPPLGVFFAAIVPR-LQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIFVRQS 550 (710)
Q Consensus 476 ~~p~~~~l~~i~p~-l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~i~v~v~~g 550 (710)
...+|||+.+.+|. ..+|+|||+|+| .++++|+ +...|.+|+||+ ++.+|+ .+.|.+|.|
T Consensus 138 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~~~l~~~vk---------~~~~G~~S~~L~~~l~~Gd------~v~v~gP~G 202 (338)
T 1krh_A 138 HFLAGQYVNVTLPGTTETRSYSFSSQPGNRLTGFVVR---------NVPQGKMSEYLSVQAKAGD------KMSFTGPFG 202 (338)
T ss_dssp CCCTTCEEEEECTTSSCEEEEECCSCTTCSEEEEEEE---------CCTTCHHHHHHHTTCCTTC------EEEEEEEEC
T ss_pred CcCCCCeEEEEcCCCCccccccccCCCCCCeEEEEEE---------EcCCCCchhhHhhccCCCC------EEEEECCcc
Confidence 34678998766665 578999999998 3444432 224689999995 676655 688899999
Q ss_pred CCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEe
Q 005185 551 NFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFS 630 (710)
Q Consensus 551 ~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~S 630 (710)
+|.++.+ .+|+||||+|||||||++|++++...+. ..+++||||+|+.+ |++|.+||+++++....+++++++|
T Consensus 203 ~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s 276 (338)
T 1krh_A 203 SFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQKGS----EHPVRLVFGVTQDC-DLVALEQLDALQQKLPWFEYRTVVA 276 (338)
T ss_dssp SCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHHCC----SSCEEEEEEESSGG-GCCCHHHHHHHHHHCTTEEEEEEET
T ss_pred ceEeCCC-CceEEEEEccccHhHHHHHHHHHHHcCC----CCeEEEEEEeCCHH-HhhhHHHHHHHHHhCCCeEEEEEEe
Confidence 9998765 4899999999999999999999876431 26899999999997 9999999999988777788999999
Q ss_pred cCCC---CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 631 REGP---TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 631 r~~~---~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
+++. .++||++.+.+. .+. ..+..+|+||| ++|+++|++.|.+.
T Consensus 277 ~~~~~~~~~g~v~~~l~~~--~~~---~~~~~vy~CGp-~~m~~~v~~~l~~~ 323 (338)
T 1krh_A 277 HAESQHERKGYVTGHIEYD--WLN---GGEVDVYLCGP-VPMVEAVRSWLDTQ 323 (338)
T ss_dssp TCCSSSSEESCSGGGCCGG--GGG---GGCSEEEEEEE-HHHHHHHHHHHHHH
T ss_pred cCCCCCCccCccCHHHHHh--hcc---cCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 8754 367888877632 111 24678999999 89999999988764
No 31
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.89 E-value=2.8e-23 Score=217.07 Aligned_cols=183 Identities=17% Similarity=0.245 Sum_probs=138.7
Q ss_pred CChHHHHHHhcC----CCcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEE-Ee
Q 005185 477 PPLGVFFAAIVP----RLQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-VR 548 (710)
Q Consensus 477 ~p~~~~l~~i~p----~l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~-v~ 548 (710)
..+|||+.+.+| ...+|+|||+|+| .++++++ +...|.+|+||+++.+|+ .+.|. ++
T Consensus 44 ~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~~~~~l~v~---------~~~~G~~s~~l~~l~~Gd------~v~v~~gP 108 (272)
T 2bgi_A 44 FRSGEFVMIGLLDDNGKPIMRAYSIASPAWDEELEFYSI---------KVPDGPLTSRLQHIKVGE------QIILRPKP 108 (272)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEEECCSCTTCSEEEEEEE---------CCTTCTTHHHHTTCCTTC------EEEEEEEE
T ss_pred cCCCCEEEEEeccCCCCeeeeeeeeccCCCCCeEEEEEE---------EccCCCchhHHHhCCCCC------EEEEeeCC
Confidence 467899876555 2367999999998 3444332 224699999999887765 57888 78
Q ss_pred cCCCcCCCCC-CCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHH-HHHH-----c--
Q 005185 549 QSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ-----S-- 619 (710)
Q Consensus 549 ~g~F~lp~~~-~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~-~~~~-----~-- 619 (710)
.|.|.++... .++++|||+|||||||++|++++.... ...+++||||+|+.+ |++|.+||+ ++++ +
T Consensus 109 ~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~~~ 183 (272)
T 2bgi_A 109 VGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE----KFDEVIMMHACRTVA-ELEYGRQLVEALQEDPLIGELV 183 (272)
T ss_dssp ECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT----SCSEEEEEEEESSSG-GGHHHHHHHHHHHHCTTTTTTS
T ss_pred CCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC----CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhcchhhccc
Confidence 8999887543 688999999999999999999875432 126899999999997 999999999 9887 3
Q ss_pred CCCcEEEEEEecCCC-Ccccccchhhcch-hHHhhc--c-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 620 GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 620 ~~~~~l~~a~Sr~~~-~k~yVq~~l~~~~-~~v~~~--l-~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
...+++++++||+.. .++||++.+.+.. .....+ + ..++.+|+||| ++|+++|++.|.+.
T Consensus 184 ~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 248 (272)
T 2bgi_A 184 EGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGS-LAFNVDVMKVLESY 248 (272)
T ss_dssp TTTEEEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHTT
T ss_pred CCcEEEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECC-HHHHHHHHHHHHHc
Confidence 245688889998743 4789988876532 111111 1 25689999999 89999999988654
No 32
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.88 E-value=1e-22 Score=224.46 Aligned_cols=180 Identities=14% Similarity=0.290 Sum_probs=138.7
Q ss_pred ChHHHHHHhc--C--C---CcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhh-ccCCCCCCCCCceEEEE
Q 005185 478 PLGVFFAAIV--P--R---LQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMK-NSLPMEKSNDCSWAPIF 546 (710)
Q Consensus 478 p~~~~l~~i~--p--~---l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~i~v~ 546 (710)
.+|||+.+.+ | . ..+|+|||+|+| .++++|+.. ...+..+.|.+|+||+ ++.+|+ .+.|.
T Consensus 185 ~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~~~~~~i~Vk~~---~~~~~~~~G~~S~~L~~~l~~Gd------~v~v~ 255 (399)
T 4g1v_A 185 TPGQYITVNTHPIRQENQYDALRHYSLCSASTKNGLRFAVKME---AARENFPAGLVSEYLHKDAKVGD------EIKLS 255 (399)
T ss_dssp CTTCEEEEEECCCSTTCCSCEEEEEEBSCSCCTTCEEEEEECC---CCBTTBCCCHHHHHHHHTCCTTC------EEEEE
T ss_pred CCCCEEEEEEeCCCCCCccceeeeecccCCCCCCeEEEEEEec---cCCCCCCCCEehhHHHhCCCCCC------EEEEE
Confidence 4688876543 3 2 357999999998 455544321 1111235799999997 676655 68899
Q ss_pred EecCCCcCCCC----CCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCC
Q 005185 547 VRQSNFKLPAD----AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGAL 622 (710)
Q Consensus 547 v~~g~F~lp~~----~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~ 622 (710)
+|.|.|.++.+ ..+|+||||+|||||||++|++++...+. .++++||||+|+.+ |++|.+||+++++++..
T Consensus 256 gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~----~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~ 330 (399)
T 4g1v_A 256 APAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNP----NRPIYWIQSSYDEK-TQAFKKHVDELLAECAN 330 (399)
T ss_dssp EEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCT----TSCEEEEEEESSST-TSTTHHHHHHHHTTCSS
T ss_pred ecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCC----CCCEEEEEecCCHH-HhhhHHHHHHHHHhCCC
Confidence 99999999865 57899999999999999999999987542 26899999999987 99999999999988887
Q ss_pred cEEEEEEecCCCCcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 623 SQLIVAFSREGPTKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 623 ~~l~~a~Sr~~~~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
+++++++|+++ ++++... +.+.+..++.+|+||| ++|+++|++.|.+.+
T Consensus 331 ~~~~~~~s~~~---g~~~~~~------l~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~G 379 (399)
T 4g1v_A 331 VDKIIVHTDTE---PLINAAF------LKEKSPAHADVYTCGS-LAFMQAMIGHLKELE 379 (399)
T ss_dssp EEEEEEETTTS---CCCCHHH------HHHHSCSSCEEEEEEC-HHHHHHHHHHHHHTT
T ss_pred cEEEEEEeCCC---CcccHHH------HHhhCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 89999999864 4554322 2223444789999999 899999999987653
No 33
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.88 E-value=5.7e-23 Score=226.65 Aligned_cols=185 Identities=22% Similarity=0.317 Sum_probs=137.1
Q ss_pred CChHHHHHHhcC--C---CcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhc-cCCCCCCCCCceEEEEE
Q 005185 477 PPLGVFFAAIVP--R---LQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKN-SLPMEKSNDCSWAPIFV 547 (710)
Q Consensus 477 ~p~~~~l~~i~p--~---l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~i~v~v 547 (710)
..+|||+.+.+| . ..+|+|||+|+| .++++|+.+ +.+..+.|.+|+||++ +.+|+ .+.|.+
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~~~~~~i~Vk~~----~~~~~~~G~~S~~L~~~l~~Gd------~v~v~g 254 (403)
T 1cqx_A 185 FEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRTYRISVKRE----GGGPQPPGYVSNLLHDHVNVGD------QVKLAA 254 (403)
T ss_dssp CCTTCEEEEEEEETTTTEEEEEEEECCSCCCSSCEEEEEECC----CBTTBCCCHHHHHHHHHCCTTC------EEEECC
T ss_pred CCCCCEEEEEEecCCCCcceeecceecCCCCCCeEEEEEEEC----CCCCCCCCeehHHHhhCCCCCC------EEEEec
Confidence 357888865444 2 357999999998 455554422 1122346999999995 77765 678888
Q ss_pred ecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEE
Q 005185 548 RQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 627 (710)
Q Consensus 548 ~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 627 (710)
|.|.|.++.+..+|+||||+|||||||++|++++.. . ..++++||||+|+.+ |++|++||+++++++..+++++
T Consensus 255 P~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~----~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 328 (403)
T 1cqx_A 255 PYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A----PPRQVVFVHGARNSA-VHAMRDRLREAAKTYENLDLFV 328 (403)
T ss_dssp CBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S----SCCCEEEEEEESCSS-SCHHHHHHHHHHHHCTTEEEEE
T ss_pred CccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C----CCCcEEEEEEeCChh-hCcHHHHHHHHHHhCCCcEEEE
Confidence 999999976667899999999999999999999865 2 126899999999998 9999999999998877788999
Q ss_pred EEecCCCCc----ccccc-hhhcchhHHhhc-ccCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 628 AFSREGPTK----EYVQH-KMMEKSSDIWNM-LSEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 628 a~Sr~~~~k----~yVq~-~l~~~~~~v~~~-l~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
++|+++... .|.++ ++... .+.+. ...++.+|+||| ++|+++|++.|.+.
T Consensus 329 ~~s~~~~~~~~~~~~~~~G~i~~~--~l~~~~~~~~~~vyvCGp-~~m~~~v~~~L~~~ 384 (403)
T 1cqx_A 329 FYDQPLPEDVQGRDYDYPGLVDVK--QIEKSILLPDADYYICGP-IPFMRMQHDALKNL 384 (403)
T ss_dssp EESSCCTTCCBTTTBSEESSCCGG--GSHHHHCCTTCEEEEESS-HHHHHHHHHHHHHT
T ss_pred EECCCCcccccccccCcCCCcCHH--HHhhccCCCCCEEEEeCC-HHHHHHHHHHHHHc
Confidence 999875422 13322 22211 12221 113789999999 89999999988754
No 34
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.88 E-value=2e-23 Score=217.55 Aligned_cols=190 Identities=14% Similarity=0.236 Sum_probs=134.9
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCC----ceEEEEEEEEeeCCCCc-ccCCccchhhhccCCCCCCCCCceEEEEE
Q 005185 476 KPPLGVFFAAIVP---RLQPRYYSISSSP----RIHVTCALVYEKTPTGR-VHKGLCSTWMKNSLPMEKSNDCSWAPIFV 547 (710)
Q Consensus 476 ~~p~~~~l~~i~p---~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~-~~~G~~S~~L~~l~~g~~~~~~~~i~v~v 547 (710)
...+|||+.+.+| ...+|+|||+|+| .++++|+++.. ...++ ...|.+|+||+++.+|+ .+.|.+
T Consensus 42 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~-~~~~~~~~~G~~s~~l~~l~~Gd------~v~v~g 114 (270)
T 2cnd_A 42 GLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYFK-NEHPKFPNGGLMTQYLDSLPVGS------YIDVKG 114 (270)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCCS-SCBTTBTTCCHHHHHHHHCCTTC------EEEEEE
T ss_pred CCCCCCEEEEEeeeCCcEEEEeeccCCCccCCCEEEEEEEEecc-CcccccCCCCchhhHHhcCCCCC------EEEEEC
Confidence 3467888854433 2467999999987 35555543311 11111 13599999999887765 678888
Q ss_pred ecCC--------CcCCC--CCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHH
Q 005185 548 RQSN--------FKLPA--DAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFV 617 (710)
Q Consensus 548 ~~g~--------F~lp~--~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~ 617 (710)
|.|. |.++. +..+|+||||+|||||||++|++++..... ...++++||||+|+.+ |++|.+||++++
T Consensus 115 P~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~--~~~~~v~l~~~~r~~~-d~~~~~el~~l~ 191 (270)
T 2cnd_A 115 PLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP--EDHTEMHLVYANRTED-DILLRDELDRWA 191 (270)
T ss_dssp EECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT--TCCCEEEEEEEESCGG-GCTTHHHHHHHH
T ss_pred CcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCC--CCCcEEEEEEEcCCHH-HcchHHHHHHHH
Confidence 8876 66664 246889999999999999999999876421 1236899999999998 999999999998
Q ss_pred HcCC-CcEEEEEEecC---CC----CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHH-HHHHHHH
Q 005185 618 QSGA-LSQLIVAFSRE---GP----TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARD-VHRTLHT 679 (710)
Q Consensus 618 ~~~~-~~~l~~a~Sr~---~~----~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~-V~~~L~~ 679 (710)
++.. .+++++++|++ +. .++||++.+.+. .......+..+|+||| ++|+++ +++.|.+
T Consensus 192 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp-~~m~~~~~~~~L~~ 258 (270)
T 2cnd_A 192 AEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACGP-PPMIQFAISPNLEK 258 (270)
T ss_dssp HHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHH---HSCCCSSSEEEEEECC-HHHHHTTTHHHHHT
T ss_pred HHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHH---hcCCCcCCEEEEEECC-HHHHHHHHHHHHHH
Confidence 7654 46788888873 21 357887764332 1111124578999999 899996 5777754
No 35
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.88 E-value=2.5e-23 Score=215.38 Aligned_cols=184 Identities=16% Similarity=0.198 Sum_probs=137.1
Q ss_pred CCChHHHHHHhcC---CCcccccccCCCC---ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEE-Ee
Q 005185 476 KPPLGVFFAAIVP---RLQPRYYSISSSP---RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIF-VR 548 (710)
Q Consensus 476 ~~p~~~~l~~i~p---~l~pR~YSIsSsp---~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~-v~ 548 (710)
...+|||+.+.+| ....|+|||+|+| .+++++. +...|.+|+||.++.+|+ .+.|. ++
T Consensus 30 ~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~~i~---------~~~~G~~s~~l~~l~~Gd------~v~v~~gp 94 (257)
T 2qdx_A 30 RFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSI---------KVPDGPLTSRLQHLKEGD------ELMVSRKP 94 (257)
T ss_dssp CCCTTCEEEEEEEETTEEEEEEEECCSCTTSSEEEEEEE---------CCTTCTTHHHHTTCCTTC------EEEECSCC
T ss_pred ccCCCCEEEEEecCCCCceeeeeEeecCCCCCeEEEEEE---------EeCCCcchhHHHhCCCCC------EEEEecCC
Confidence 3467999866554 2367999999998 2444332 224699999999887765 57777 67
Q ss_pred cCCCcCCCCC-CCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHH-HHHH-----c--
Q 005185 549 QSNFKLPADA-KVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELN-NFVQ-----S-- 619 (710)
Q Consensus 549 ~g~F~lp~~~-~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~-~~~~-----~-- 619 (710)
.|.|.++... .+++||||+|||||||+++++++...+.. .+++||||+|+.+ |++|.+||+ ++++ +
T Consensus 95 ~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~----~~v~l~~~~r~~~-~~~~~~el~~~l~~~~~~~~~~ 169 (257)
T 2qdx_A 95 TGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERY----EKVILVHGVRWVS-ELAYADFITKVLPEHEYFGDQV 169 (257)
T ss_dssp BCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHHC----SEEEEEEEESSGG-GCTTHHHHHTTGGGCTTTHHHH
T ss_pred CCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCCC----CeEEEEEEcCCHH-HhHhHHHHHHHHHhchhhhccC
Confidence 8889887543 67899999999999999999988764322 6899999999997 999999999 8765 2
Q ss_pred CCCcEEEEEEecCCC-Ccccccchhhcch-hHHhhc--c-cCCcEEEEecCchhhHHHHHHHHHHH
Q 005185 620 GALSQLIVAFSREGP-TKEYVQHKMMEKS-SDIWNM--L-SEGAYLYVCGDAKSMARDVHRTLHTI 680 (710)
Q Consensus 620 ~~~~~l~~a~Sr~~~-~k~yVq~~l~~~~-~~v~~~--l-~~~~~iyvCGpa~~M~~~V~~~L~~i 680 (710)
...+++++++|++.. .+++|++.+.+.. .....+ + ..++.+|+||| ++|+++|++.|.+.
T Consensus 170 ~~~~~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp-~~m~~~v~~~l~~~ 234 (257)
T 2qdx_A 170 KEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGS-PSMLEETSAVLDSF 234 (257)
T ss_dssp HHHEEEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEEC-HHHHHHHHHHHHHT
T ss_pred CCcEEEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECC-HHHHHHHHHHHHHc
Confidence 134578889998743 4788988876532 111111 1 25689999999 89999999988754
No 36
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.87 E-value=6.9e-23 Score=212.92 Aligned_cols=167 Identities=23% Similarity=0.255 Sum_probs=129.0
Q ss_pred CChHHHHHHhcCC---CcccccccCCCC----ceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEec
Q 005185 477 PPLGVFFAAIVPR---LQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 477 ~p~~~~l~~i~p~---l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~ 549 (710)
..+|||+.+.+|. ..+|+|||+|+| .++++|+. ...|.+|+||+++.+|+ .+.|.+|.
T Consensus 34 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~---------~~~G~~S~~l~~l~~Gd------~v~v~gP~ 98 (262)
T 1ep3_B 34 DLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRI---------GDETTGTYKLSKLESGA------KVDVMGPL 98 (262)
T ss_dssp CSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEEC---------CCTTSHHHHHHTCCTTC------EEEEEEEE
T ss_pred CCCCceEEEEcCCCCceeeEEEEeeeecCCCCEEEEEEEE---------ecCCchHHHHhcCCCCC------EEEEEccc
Confidence 3578888765563 678999999987 35544432 23688999999887765 68889998
Q ss_pred CC-CcCCCC-CCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEE
Q 005185 550 SN-FKLPAD-AKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIV 627 (710)
Q Consensus 550 g~-F~lp~~-~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~ 627 (710)
|+ |.++.+ ..+|++|||+|||||||++|++++...+ .+++||||+|+++ |++|.+||++++.. ++++
T Consensus 99 G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~------~~v~l~~~~r~~~-~~~~~~el~~l~~~----~~~~ 167 (262)
T 1ep3_B 99 GNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG------CQMTILLGFASEN-VKILENEFSNLKNV----TLKI 167 (262)
T ss_dssp SBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT------CEEEEEEEESSGG-GCCCHHHHHTSTTE----EEEE
T ss_pred CCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC------CeEEEEEEcCCHH-HhhhHHHHhhhccC----cEEE
Confidence 88 998765 4689999999999999999999987642 5799999999997 99999999886532 4444
Q ss_pred EEecCCC--CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005185 628 AFSREGP--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 679 (710)
Q Consensus 628 a~Sr~~~--~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~ 679 (710)
+ +++++ .++||++.+.+. +.++..+|+||| ++|+++|++ |.+
T Consensus 168 ~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp-~~m~~~v~~-l~~ 211 (262)
T 1ep3_B 168 A-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGA-PAMLKAVAK-KYD 211 (262)
T ss_dssp E-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESC-HHHHHHHHH-HTT
T ss_pred E-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECC-HHHHHHHHH-HHh
Confidence 3 45443 467888755442 334689999999 899999998 754
No 37
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.86 E-value=9.7e-22 Score=185.92 Aligned_cols=141 Identities=25% Similarity=0.285 Sum_probs=121.8
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcC-CCeEEEEecCCCCCC--CCchHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKK-ENIVFFFLATYGDGE--PTDNAAR 181 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~-~~~~if~~sTyG~G~--~pdna~~ 181 (710)
|+++|+|+|+||||+.+|+.|++.+.+.+ ..++++|+++++. .++.+ ++.+||++||||.|. +|+++..
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g--~~v~~~~~~~~~~------~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~ 72 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAG--YEVDSRDAASVEA------GGLFEGFDLVLLGCSTWGDDSIELQDDFIP 72 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHT--CEEEEEEGGGCCS------TTTTTTCSEEEEEECEECSSSCEECTTTHH
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcC--CeeEEEehhhCCH------HHhcCcCCEEEEEeCCCCCCCcCCChhHHH
Confidence 57999999999999999999999998765 4678899988764 34777 999999999999999 9999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCC-chhhHHHHHHHHHH
Q 005185 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQC-IEDDFSAWRELVWP 258 (710)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~-~e~~f~~W~~~l~~ 258 (710)
|++++... .+++++++|||+||+.|.+||.+.+.+++.|..+|++++.+....|.... ..+.+.+|.+++++
T Consensus 73 fl~~l~~~-----~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 73 LFDSLEET-----GAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRG 145 (147)
T ss_dssp HHHTGGGS-----CCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----ccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccccccCchhHHHHHHHHHHHHHh
Confidence 99999753 48899999999999999889999999999999999999887665554322 56779999988764
No 38
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.84 E-value=1.5e-21 Score=208.86 Aligned_cols=170 Identities=16% Similarity=0.212 Sum_probs=128.7
Q ss_pred CCChHHHHHHhcCCCcccccccCCCC----ceEEEEEEEEeeCCCCcccCCc-cchhhh-ccCCCCCCCCCceEEEEEec
Q 005185 476 KPPLGVFFAAIVPRLQPRYYSISSSP----RIHVTCALVYEKTPTGRVHKGL-CSTWMK-NSLPMEKSNDCSWAPIFVRQ 549 (710)
Q Consensus 476 ~~p~~~~l~~i~p~l~pR~YSIsSsp----~i~~tv~~v~~~~~~g~~~~G~-~S~~L~-~l~~g~~~~~~~~i~v~v~~ 549 (710)
...+|||+.+.+|...+|+|||+|+| .++++|+ +...|. +|+||+ ++.+|+ .+.|.+|.
T Consensus 38 ~~~pGQ~v~l~~~~g~~R~ySi~s~~~~~~~l~i~Vk---------~~~~G~g~S~~L~~~l~~Gd------~v~v~gP~ 102 (321)
T 2pia_A 38 PFEAGANLTVAVPNGSRRTYSLCNDSQERNRYVIAVK---------RDSNGRGGSISFIDDTSEGD------AVEVSLPR 102 (321)
T ss_dssp CCCTTCEEEEECTTSCEEEEECCSCTTCCSEEEEEEE---------CCTTSCSHHHHHHHSCCTTC------EEEECCCB
T ss_pred CCCCCCEEEEECCCCCcEEEEeCCCCCCCCeEEEEEE---------EecCCcchhHHHHhcCCCCC------EEEEeCCc
Confidence 34679998766666689999999998 2444432 224587 899999 677765 67888889
Q ss_pred CCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEE
Q 005185 550 SNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAF 629 (710)
Q Consensus 550 g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~ 629 (710)
|.|.++.+ .++++|||+|||||||++|++++...+ . .+++||||+|+.+ |++|.+||+++. .+. ++.+.+
T Consensus 103 g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~----~-~~v~l~~~~r~~~-~~~~~~el~~l~-~~~--~~~~~~ 172 (321)
T 2pia_A 103 NEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEG----L-RSFRLYYLTRDPE-GTAFFDELTSDE-WRS--DVKIHH 172 (321)
T ss_dssp CCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHC----S-SEEEEEEEESCGG-GCTTHHHHHSTT-TTT--TEEEEE
T ss_pred cccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcC----C-CcEEEEEEECChh-hhHHHHHHhcCc-cCC--eEEEEE
Confidence 99998764 678999999999999999999987643 1 5799999999997 999999999885 232 345556
Q ss_pred ecCCC-CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHH
Q 005185 630 SREGP-TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHT 679 (710)
Q Consensus 630 Sr~~~-~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~ 679 (710)
+++.. .+.++++.+.+ ...+..+|+||| ++|+++|++.|.+
T Consensus 173 ~~~~~~g~~~~~~ll~~--------~~~~~~vyvCGP-~~m~~~v~~~l~~ 214 (321)
T 2pia_A 173 DHGDPTKAFDFWSVFEK--------SKPAQHVYCCGP-QALMDTVRDMTGH 214 (321)
T ss_dssp CTTCTTSCCCHHHHHSS--------CCTTEEEEEESC-HHHHHHHHHHTTT
T ss_pred CCCcccCccCHHHHhcc--------cCCCCEEEEECC-HHHHHHHHHHHHh
Confidence 66432 23344433322 235788999999 8999999999876
No 39
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.84 E-value=9.9e-22 Score=193.07 Aligned_cols=146 Identities=23% Similarity=0.406 Sum_probs=122.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCC-------
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT------- 176 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~p------- 176 (710)
|++++|+|+|+||||+.+|+.|++.+... ..++++++++++. .++.+++.+||++||||.|++|
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~~---~~v~~~~~~~~~~------~~l~~~d~ii~g~pty~~G~~pg~~~~~~ 71 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDDE---VMAKPLNVNRADV------ADFMAYDFLILGTPTLGDGQLPGLSANAA 71 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCTT---TBCCCEEGGGCCH------HHHHHCSEEEEEEECBTTTBCSSGGGTCS
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhccc---CceEEEEcccCCH------HHHhhCCeEEEEEeeCCCCCCCccccccc
Confidence 56899999999999999999999988643 2456778877653 4577899999999999999999
Q ss_pred -chHHHHHHHHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc-----------------
Q 005185 177 -DNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV----------------- 236 (710)
Q Consensus 177 -dna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~l~~~----------------- 236 (710)
+++..|+++|... .|++++++|||+||+. | ++||.+.+.++++|.++|++.+.+.
T Consensus 72 ~~~~~~f~~~l~~~-----~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~ 146 (182)
T 2wc1_A 72 SESWEEFLPRIADQ-----DFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGE 146 (182)
T ss_dssp SCCHHHHGGGGTTC-----CCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTE
T ss_pred hhHHHHHHHHhhhc-----cCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCc
Confidence 9999999988642 5889999999999998 8 5899999999999999999988763
Q ss_pred --ccc-CCC-C--CchhhHHHHHHHHHHHHHhh
Q 005185 237 --GLG-DDD-Q--CIEDDFSAWRELVWPELDNL 263 (710)
Q Consensus 237 --g~g-D~~-~--~~e~~f~~W~~~l~~~L~~~ 263 (710)
|++ |.+ + ..+++++.|.++|+++|...
T Consensus 147 ~~gl~~d~~~~~~~~~~~~~~w~~~l~~~l~~~ 179 (182)
T 2wc1_A 147 FLGLALDQDNQAALTPERLKGWLSLIAADFGLV 179 (182)
T ss_dssp ESSEEECTTTCGGGHHHHHHHHHHHTHHHHTCC
T ss_pred eeeeeccCCCCccccHHHHHHHHHHHHHHHhcc
Confidence 554 322 2 25788999999999988654
No 40
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.84 E-value=2.8e-21 Score=189.53 Aligned_cols=143 Identities=22% Similarity=0.389 Sum_probs=119.1
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCC--------
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT-------- 176 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~p-------- 176 (710)
++++|+|+|+||||+.+|+.|++.+.. + ..++++|+++.+. .++..++.+||++||||+|++|
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~-~--~~v~~~~~~~~~~------~~l~~~d~iilg~pt~~~G~~pg~~~~~~~ 71 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD-E--TMSDALNVNRVSA------EDFAQYQFLILGTPTLGEGELPGLSSDAEN 71 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT-T--TBCCCEEGGGCCH------HHHHTCSEEEEEEECBTTTBCSSGGGTCSS
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC-C--CceEEEEhhhCCH------HHHhcCCEEEEEeccCCCCcCCcccccccc
Confidence 479999999999999999999998854 2 3456778877653 4577899999999999999999
Q ss_pred chHHHHHHHHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc------------------
Q 005185 177 DNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV------------------ 236 (710)
Q Consensus 177 dna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~l~~~------------------ 236 (710)
+++..|+++|... .+++++++|||+||+. | ++||.+++.+++.|.++|++.+.+.
T Consensus 72 ~~~~~fl~~l~~~-----~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f 146 (179)
T 1yob_A 72 ESWEEFLPKIEGL-----DFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKF 146 (179)
T ss_dssp CCHHHHHHHHTTC-----CCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSB
T ss_pred hHHHHHHHHhhhc-----ccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCce
Confidence 9999999999642 5889999999999998 9 5799999999999999999988663
Q ss_pred -cc-cCCC-C--CchhhHHHHHHHHHHHHH
Q 005185 237 -GL-GDDD-Q--CIEDDFSAWRELVWPELD 261 (710)
Q Consensus 237 -g~-gD~~-~--~~e~~f~~W~~~l~~~L~ 261 (710)
|+ .|.+ + ..++++++|.+++++.|.
T Consensus 147 ~gl~~d~~~~~~~~~~~i~~w~~~l~~~~~ 176 (179)
T 1yob_A 147 VGLALDLDNQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp SSEEECTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred eccccCCCCCCcccHHHHHHHHHHHHHHHh
Confidence 43 2322 2 367889999999987664
No 41
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.84 E-value=1.2e-20 Score=183.90 Aligned_cols=140 Identities=27% Similarity=0.429 Sum_probs=116.8
Q ss_pred eEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCC-CCcchHHHHhhcCCCeEEEEecCCCCCCC----CchHH
Q 005185 106 KVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEP----TDNAA 180 (710)
Q Consensus 106 ~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~~if~~sTyG~G~~----pdna~ 180 (710)
+++|+|+|+||||+.+|+.|++.+... .+++++++++ +. .++.+++.+||++||||+|++ |+++.
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~----~~~~~~~~~~~~~------~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~ 70 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGAK----ADAPIDVDDVTDP------QALKDYDLLFLGAPTWNTGADTERSGTSWD 70 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGG----BCCCEEGGGCSCG------GGGGGCSEEEEEEECCSTTCSSCCSCSTHH
T ss_pred CEEEEEECCCchHHHHHHHHHHHhccC----CcEEEehhhcCCh------hHHccCCEEEEEEeecCCCCcCccCcHHHH
Confidence 589999999999999999999999764 3567788776 43 357889999999999999999 99999
Q ss_pred HHH-HHHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc-------------------cc
Q 005185 181 RFY-KWFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV-------------------GL 238 (710)
Q Consensus 181 ~F~-~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~l~~~-------------------g~ 238 (710)
.|+ ++|... .+++++|+|||+||+. | ++||.+++.++++|.++|++.+.+. |+
T Consensus 71 ~fl~~~l~~~-----~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l 145 (173)
T 2fcr_A 71 EFLYDKLPEV-----DMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGL 145 (173)
T ss_dssp HHHHHTGGGC-----CCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSE
T ss_pred HHHHhhcccc-----ccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccchhhhCCeeeee
Confidence 999 887642 5889999999999999 8 6999999999999999999988652 22
Q ss_pred --cCC--CCCchhhHHHHHHHHHHHH
Q 005185 239 --GDD--DQCIEDDFSAWRELVWPEL 260 (710)
Q Consensus 239 --gD~--~~~~e~~f~~W~~~l~~~L 260 (710)
+.+ +...+++++.|.+++++.|
T Consensus 146 ~~~~~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 146 PLDMVNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp EEETTTCSSCHHHHHHHHHHHHHHHH
T ss_pred eecCCCCccccHHHHHHHHHHHHHHh
Confidence 222 2246788999999998776
No 42
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.83 E-value=8.6e-21 Score=185.33 Aligned_cols=143 Identities=26% Similarity=0.392 Sum_probs=119.7
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (710)
|+++|+|+|+||||+++|+.|++.+... .++++++++++. .++.+++++||++||||.|++|+++..|++
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~----~v~i~~~~~~~~------~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~ 70 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKD----VADVHDIAKSSK------EDLEAYDILLLGIPTWYYGEAQCDWDDFFP 70 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEEGGGCCH------HHHHTCSEEEEECCEETTTEECHHHHHHHH
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccC----ceEEEEcccCCh------hHhhhCCEEEEEEeecCCCcChHHHHHHHh
Confidence 5799999999999999999999998753 367888877653 457889999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc-h-HHHHHHHHHHHHHHHHcCCcccccc--------------------cc-cC-
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ-Y-EHFNKIAKVVDEILANQGAKRLVPV--------------------GL-GD- 240 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~l~~~--------------------g~-gD- 240 (710)
+|... .++|++++|||+||+. | ++||.+.+.+++.|.+.|++.+... |+ .|
T Consensus 71 ~l~~~-----~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~ 145 (175)
T 1ag9_A 71 TLEEI-----DFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDE 145 (175)
T ss_dssp HHTTC-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECT
T ss_pred hhhhc-----ccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCC
Confidence 99743 4889999999999986 8 7999999999999999999987642 11 12
Q ss_pred CCC--CchhhHHHHHHHHHHHHHh
Q 005185 241 DDQ--CIEDDFSAWRELVWPELDN 262 (710)
Q Consensus 241 ~~~--~~e~~f~~W~~~l~~~L~~ 262 (710)
+++ ..++++.+|.++|++.|..
T Consensus 146 ~~~~~~~~~~i~~w~~~i~~~~~~ 169 (175)
T 1ag9_A 146 DRQPELTAERVEKWVKQISEELHL 169 (175)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCcccccHHHHHHHHHHHHHHhhh
Confidence 122 2567899999999998864
No 43
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.82 E-value=5.6e-21 Score=184.42 Aligned_cols=138 Identities=25% Similarity=0.367 Sum_probs=113.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
|++++|+|+|+||||+++|+.|++.+ + . ++++++++++. .++.+++.+||++||||.|++|+++..|+
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l---g--~-~~~~~~~~~~~------~~l~~~d~ii~g~pt~~~g~~p~~~~~f~ 68 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI---G--N-AEVVDVAKASK------EQFNSFTKVILVAPTAGAGDLQTDWEDFL 68 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH---C--S-EEEEEGGGCCH------HHHTTCSEEEEEEEEETTTEECHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc---C--C-cEEEecccCCH------hHHhhCCEEEEEECCcCCCcCcHHHHHHH
Confidence 46899999999999999999999998 2 3 68889887764 45778999999999999999999999999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCc-hH-HHHHHHHHHHHHHHHcCCcccccc-------------------cccCC-
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GLGDD- 241 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~l~~~-------------------g~gD~- 241 (710)
++|... .|++++|+|||+||+. |. +||.+++.++++|++ ++++.+. ++..+
T Consensus 69 ~~l~~~-----~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~ 141 (164)
T 2bmv_A 69 GTLEAS-----DFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDE 141 (164)
T ss_dssp TTCCTH-----HHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSEEECT
T ss_pred HHHhhh-----hcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCccCCC
Confidence 988643 4789999999999996 97 699999999999987 7777653 33222
Q ss_pred C---CCchhhHHHHHHHHHHHH
Q 005185 242 D---QCIEDDFSAWRELVWPEL 260 (710)
Q Consensus 242 ~---~~~e~~f~~W~~~l~~~L 260 (710)
+ ...++++++|.+++++.|
T Consensus 142 ~~~~~~~~~~~~~w~~~l~~~l 163 (164)
T 2bmv_A 142 DNQDDLTDERISKWVEQVKGSF 163 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTTTC
T ss_pred CCccccCHHHHHHHHHHHHHhh
Confidence 1 124778999999886543
No 44
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.81 E-value=4.7e-20 Score=178.58 Aligned_cols=142 Identities=22% Similarity=0.386 Sum_probs=119.9
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (710)
|+++|+|+|+||||+++|+.|++.+.+. .++++++++++. +++.+++.+||++||||.|.+|+++..|++
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~----~v~~~~~~~~~~------~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~ 71 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND----VVTLHDVSQAEV------TDLNDYQYLIIGCPTLNIGELQSDWEGLYS 71 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEETTTCCG------GGGGGCSEEEEEEEEETTTEECHHHHHHHT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC----CcEEEEcccCCH------HHHhhCCEEEEEEeeCCCCcCCHHHHHHHH
Confidence 6899999999999999999999998753 368899988774 357889999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc-hH-HHHHHHHHHHHHHHHcCCcccccc-------------------c--ccCC
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------G--LGDD 241 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~l~~~-------------------g--~gD~ 241 (710)
+|... .++++++++||+|++. |. +||.+.+.+++.|.++|++.+.+. + .+.+
T Consensus 72 ~l~~~-----~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~ 146 (169)
T 1obo_A 72 ELDDV-----DFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDED 146 (169)
T ss_dssp TGGGC-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred Hhhhc-----CcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcCCceeeEEeeCC
Confidence 98753 5889999999999984 96 899999999999999999987651 2 2222
Q ss_pred --CCCchhhHHHHHHHHHHHHH
Q 005185 242 --DQCIEDDFSAWRELVWPELD 261 (710)
Q Consensus 242 --~~~~e~~f~~W~~~l~~~L~ 261 (710)
+...++++..|.+++++.|.
T Consensus 147 ~~~~~~~~~~~~w~~~~~~~l~ 168 (169)
T 1obo_A 147 NQSDLTDDRIKSWVAQLKSEFG 168 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHhc
Confidence 22357789999999988773
No 45
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.81 E-value=5.5e-20 Score=178.05 Aligned_cols=142 Identities=22% Similarity=0.383 Sum_probs=119.1
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (710)
++++|+|+|+||||+.+|+.|++.+... ..++++|+.+++. .++.+++.+||++|||+.|++|++++.|++
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~---~~v~~~~~~~~~~------~~l~~~d~ii~g~pty~~g~~p~~~~~f~~ 71 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE---SIVDLNDIANADA------SDLNAYDYLIIGCPTWNVGELQSDWEGIYD 71 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST---TTEEEEEGGGCCG------GGGGGCSEEEEECCEETTTEECHHHHHHGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc---cceEEEEhhhCCH------hHHhhCCEEEEEecccCCCcCCHHHHHHHH
Confidence 5799999999999999999999999653 2478899988764 357889999999999999999999999999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCc-hH-HHHHHHHHHHHHHHHcCCcccccc-------------------cc-cCC-
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGLGNRQ-YE-HFNKIAKVVDEILANQGAKRLVPV-------------------GL-GDD- 241 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~l~~~-------------------g~-gD~- 241 (710)
+|... .++++++++||+||+. |. +||.+.+.+++.|.++|++.+... |+ .|.
T Consensus 72 ~l~~~-----~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~gl~~~~~ 146 (169)
T 1czn_A 72 DLDSV-----NFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDED 146 (169)
T ss_dssp GGGGS-----CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred Hhhhh-----ccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeCCeeeeeeecCC
Confidence 98643 5889999999999996 96 899999999999999999987631 22 122
Q ss_pred --CCCchhhHHHHHHHHHHHH
Q 005185 242 --DQCIEDDFSAWRELVWPEL 260 (710)
Q Consensus 242 --~~~~e~~f~~W~~~l~~~L 260 (710)
+...++++.+|.+++++.|
T Consensus 147 ~~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 147 NQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHh
Confidence 2246788999999998876
No 46
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.74 E-value=1.3e-17 Score=155.78 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=100.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCc-hHHHHHHH
Q 005185 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD-NAARFYKW 185 (710)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pd-na~~F~~~ 185 (710)
|+|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+++. .++.+++.+||++||||.|.+|+ ++..|+++
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~ 72 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESG--KDVNTINVSDVNI------DELLNEDILILGCSAMTDEVLEESEFEPFIEE 72 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTT--CCCEEEEGGGCCH------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCC--CeEEEEEhhhCCH------HHHhhCCEEEEEcCccCCCCCChHHHHHHHHH
Confidence 579999999999999999999998875 4578999988774 45789999999999999999887 99999999
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccccccc
Q 005185 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 239 (710)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~g 239 (710)
|... ++++++++||+++..| |.+.+.++++|+++|++.+.+....
T Consensus 73 l~~~------l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~G~~~v~~~~~~ 117 (138)
T 5nul_A 73 ISTK------ISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVVVETPLIV 117 (138)
T ss_dssp HGGG------CTTCEEEEEEEESSSC---SHHHHHHHHHHHHTTCEECSCCEEE
T ss_pred HHhh------cCCCEEEEEEecCCCC---ChHHHHHHHHHHHCCCEEECCceEE
Confidence 9742 7899999999876554 7889999999999999998764433
No 47
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.68 E-value=1.7e-17 Score=171.43 Aligned_cols=168 Identities=13% Similarity=0.110 Sum_probs=113.7
Q ss_pred CChHHHHHHhcCC----CcccccccCCCCceEEEEEEEEeeCCCCcccCCccchhhhccCCCCCCCCCceEEEEEecCCC
Q 005185 477 PPLGVFFAAIVPR----LQPRYYSISSSPRIHVTCALVYEKTPTGRVHKGLCSTWMKNSLPMEKSNDCSWAPIFVRQSNF 552 (710)
Q Consensus 477 ~p~~~~l~~i~p~----l~pR~YSIsSsp~i~~tv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~i~v~v~~g~F 552 (710)
..+|||+.+.+|. ...|+|||+|.|.-.+++.++.. ...|.+|+||+++.+|+ .+.|..|.|.|
T Consensus 39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~~~~~i~~~~~------~~~G~~S~~l~~l~~Gd------~l~v~gP~G~f 106 (252)
T 2gpj_A 39 DQESAYIKLLFPQAGERPLMRTYTIRQQRDDEIDVDFVLH------DTDGPASSWAKTAQVGE------LIQIGGPGLKK 106 (252)
T ss_dssp CCTTCEEEEEECCTTSCCEEEEEECCEEETTEEEEEEECC------SSCCHHHHHHHHCCTTC------EEEEEEEECCC
T ss_pred CCCCCeEEEEcccCCCCCCCCceeeeccCCCEEEEEEEEe------CCCCcHHHHHhhCCCCC------EEEEecCCCCC
Confidence 3579999776663 46799999997632333333321 11389999999888876 68899999999
Q ss_pred cCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCcEEEEEEecC
Q 005185 553 KLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALSQLIVAFSRE 632 (710)
Q Consensus 553 ~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~ 632 (710)
.++.+ .++++|||+||||||+++|+++... . .++++|+++|+.+ |.++ |. ....++++.+++.+
T Consensus 107 ~l~~~-~~~~lliagGtGitPi~s~l~~l~~---~----~~~~~~~~~~~~~-d~~~---l~----~~~~~~v~~~~~~~ 170 (252)
T 2gpj_A 107 LINFE-ADWFLLAGDMTALPAISVNLAKLPN---N----AVGYAVIEVLSEA-DIQP---LV----HPEHVELHWVINPE 170 (252)
T ss_dssp CCCSS-SSEEEEEEEGGGHHHHHHHHHHSCT---T----CEEEEEEEESSGG-GCCC---CC----CCTEEEEEEEECSS
T ss_pred cCCCC-CceEEEEcchhhHHHHHHHHHhCCC---C----CcEEEEEEECCHH-Hhhc---cc----CCCCcEEEEEeCCC
Confidence 98754 4789999999999999999998732 1 4678999999876 6542 21 12234566666543
Q ss_pred CCC-cccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHH
Q 005185 633 GPT-KEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLH 678 (710)
Q Consensus 633 ~~~-k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~ 678 (710)
... ...+.+.+.+. .+-..+.++|+||| ++|+++|++.|.
T Consensus 171 ~~~~g~~~~~~l~~~-----~~~~~~~~vy~CGP-~~m~~av~~~l~ 211 (252)
T 2gpj_A 171 ADPEGRPLVERIAQL-----PWLAGEPAVWIACE-FNSMRALRRHFK 211 (252)
T ss_dssp CCTTCHHHHHHHTTS-----CCCSSCEEEEEEEE-HHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHhc-----cCCCCCcEEEEEcC-HHHHHHHHHHHH
Confidence 221 11222222211 00123568999999 899999999987
No 48
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.68 E-value=2.7e-17 Score=150.28 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=86.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHH
Q 005185 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWF 186 (710)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L 186 (710)
++|+|+|+|||||++|++|+ +. + + ++++ +.+ .++.++|++||||+|++|+++..|++.
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~~--~----~---~i~~---------~~~-~~~~ii~g~pt~~~g~~p~~~~~fl~~- 58 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--MP--A----V---QIGE---------DLV-IDEDFILITYTTGFGNVPERVLEFLER- 58 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--SC--E----E---ECCT---------TCC-CCSCEEEEECCBTTTBCCHHHHHHHHH-
T ss_pred CEEEEECCChhHHHHHHHhc--cc--C----C---CcCc---------ccc-cCCCEEEEEeecCCCcCCHHHHHHHHH-
Confidence 47999999999999999998 22 1 2 2322 123 488999999999999999999999854
Q ss_pred HhhcCCCCCcCCceEEEEeccCCchHH-HHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHH
Q 005185 187 TEQKEGGEWLQKLKYGVFGLGNRQYEH-FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257 (710)
Q Consensus 187 ~~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~ 257 (710)
+++++|+|||+||+.|.+ ||.+++.++++|. ....... .+..+....+.+.+|.++++
T Consensus 59 ---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~---~~~~~~~-~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 59 ---------NNEKLKGVSASGNRNWGDMFGASADKISAKYE---VPIVSKF-ELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp ---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---CCEEEEE-ETTCCHHHHHHHHHHHHHHT
T ss_pred ---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhC---CccEEEE-ecCCCHHHHHHHHHHHHHhc
Confidence 457899999999999977 9999999999874 3322222 12222222445788988775
No 49
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.67 E-value=1.2e-16 Score=153.90 Aligned_cols=141 Identities=13% Similarity=0.052 Sum_probs=109.6
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (710)
|+|+|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+.+.+ +...++.+++.+||++|||| |.+|+ ..|++
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g--~~v~~~~~~~~~~~--~~~~~~~~~d~ii~Gspty~-g~~p~--~~fl~ 73 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTG--VAVEMVDLRAVDPQ--ELIEAVSSARGIVLGTPPSQ-PSEAV--ATALS 73 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTT--CCEEEEETTTCCHH--HHHHHHHHCSEEEEECCBSS-CCHHH--HHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCC--CeEEEEECCCCCHH--HHHHHHHhCCEEEEEcCCcC-CchhH--HHHHH
Confidence 57999999999999999999999998765 45789999887653 23445678999999999996 88775 88999
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCC--CCCchhhHHHHHHHHHHHHH
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPELD 261 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~~L~ 261 (710)
.|... .++++++++||. |.|+|.+.+.+++.|+++|++.+.+...... +....+...+|-+.+...|.
T Consensus 74 ~l~~~-----~l~gk~v~~fgs----~g~~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~l~ 143 (161)
T 3hly_A 74 TIFAA-----AHNKQAIGLFDS----YGGDDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLGQWLT 143 (161)
T ss_dssp HHHHH-----CCTTSEEEEECC----CCSSBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh-----hhCCCEEEEEEc----CCCCcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHH
Confidence 88754 378999999995 5566889999999999999998866443322 22223456677777766665
No 50
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.66 E-value=1.5e-16 Score=152.97 Aligned_cols=143 Identities=10% Similarity=0.023 Sum_probs=112.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCC-CCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (710)
.++|+|+|+|+||||+++|+.|++.+.+.+ ..++++|+.+. +.+ +...++.+++.+||++|||+ |++| +..|
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g--~~v~~~~~~~~~~~~--~~~~~~~~~d~ii~Gspty~-g~~p--~~~~ 76 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTG--VGVDVVDLGAAVDLQ--ELRELVGRCTGLVIGMSPAA-SAAS--IQGA 76 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTT--CEEEEEESSSCCCHH--HHHHHHHTEEEEEEECCBTT-SHHH--HHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCC--CeEEEEECcCcCCHH--HHHHHHHhCCEEEEEcCcCC-CCcc--HHHH
Confidence 468999999999999999999999998765 46789999876 542 23456778999999999996 8877 4889
Q ss_pred HHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCC--CchhhHHHHHHHHHHHH
Q 005185 183 YKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQ--CIEDDFSAWRELVWPEL 260 (710)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~--~~e~~f~~W~~~l~~~L 260 (710)
++.|... .++++++++||. |.|+|.+.+.+.++|+++|++.+.+........ ...+...+|-+.|...+
T Consensus 77 l~~l~~~-----~~~~k~va~fgs----~g~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~~ 147 (159)
T 3fni_A 77 LSTILGS-----VNEKQAVGIFET----GGGDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLGQWV 147 (159)
T ss_dssp HHHHHHH-----CCTTSEEEEECC----SSSCBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-----cccCCEEEEEEc----CCCCcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 9888764 378999999994 567888899999999999999887654433322 23345667777777666
Q ss_pred Hh
Q 005185 261 DN 262 (710)
Q Consensus 261 ~~ 262 (710)
.+
T Consensus 148 ~~ 149 (159)
T 3fni_A 148 TR 149 (159)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 51
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=155.80 Aligned_cols=134 Identities=13% Similarity=0.214 Sum_probs=90.3
Q ss_pred EEecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhh---CCCCCcEEEEEeecCCCcccc-hHHHHHHHHHc--
Q 005185 546 FVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEA---GAELGPSLLFFGCRNRKMDYI-YEDELNNFVQS-- 619 (710)
Q Consensus 546 ~v~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~---~~~~~~~~Lf~G~R~~~~D~l-y~dEL~~~~~~-- 619 (710)
.+|.|.|.++....+|+||||||||||||++|++++...... +....+++|+||+|+.+ +++ |.+||+++.+.
T Consensus 4 ~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~-~~~w~~~~l~~l~~~~~ 82 (186)
T 3a1f_A 4 DGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTH-AFEWFADLLQLLESQMQ 82 (186)
T ss_dssp TSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTT-TTHHHHHHHHHHHHHHH
T ss_pred ECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcc-hHHHHHHHHHHHHHHHh
Confidence 356777776434567899999999999999999998865321 11236899999999997 887 99999999875
Q ss_pred ----CCCcEEEEEEecCCC---Ccccccc-----hh----------hcchhH----Hhhcc-cCCcEEEEecCchhhHHH
Q 005185 620 ----GALSQLIVAFSREGP---TKEYVQH-----KM----------MEKSSD----IWNML-SEGAYLYVCGDAKSMARD 672 (710)
Q Consensus 620 ----~~~~~l~~a~Sr~~~---~k~yVq~-----~l----------~~~~~~----v~~~l-~~~~~iyvCGpa~~M~~~ 672 (710)
...+++++++|++.. .+.|++. .+ +-+.+. +.... ..+..||+||| ++|+++
T Consensus 83 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP-~~m~~~ 161 (186)
T 3a1f_A 83 ERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP-EALAET 161 (186)
T ss_dssp HTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC-HHHHHH
T ss_pred hccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC-HHHHHH
Confidence 235678888888632 1122220 00 001111 11111 13578999999 899999
Q ss_pred HHHHHHHHH
Q 005185 673 VHRTLHTIV 681 (710)
Q Consensus 673 V~~~L~~i~ 681 (710)
|++.|.+..
T Consensus 162 v~~~l~~~g 170 (186)
T 3a1f_A 162 LSKQSISNS 170 (186)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999987654
No 52
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.62 E-value=2.7e-15 Score=139.30 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=105.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCc-hHHHHHHH
Q 005185 107 VTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTD-NAARFYKW 185 (710)
Q Consensus 107 v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pd-na~~F~~~ 185 (710)
++|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+++. +++.+++.+||++|||+.|.+|+ +++.|+++
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g--~~v~~~~~~~~~~------~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAG--ADVESVRFEDTNV------DDVASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTT--CCEEEEETTSCCH------HHHHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCC--CeEEEEEcccCCH------HHHhcCCEEEEEccccCCCCCCHHHHHHHHHH
Confidence 789999999999999999999998765 4578899988764 45788999999999999888888 49999999
Q ss_pred HHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHH
Q 005185 186 FTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVW 257 (710)
Q Consensus 186 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~ 257 (710)
+.. .++++++++||.+... ||.+.+.+++.|..+|++.+ +....+...+..+.+.+|.+++.
T Consensus 74 l~~------~l~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~l~ 135 (137)
T 2fz5_A 74 LAP------KLKGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI-GTAIVNEMPDNAPECKELGEAAA 135 (137)
T ss_dssp HGG------GCSSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE-EEEEEESSSSSCTHHHHHHHHHH
T ss_pred hhh------hcCCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc-CcEEEeeCCChHHHHHHHHHHHh
Confidence 964 4889999999963222 78899999999999999987 42222211111566777876653
No 53
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.62 E-value=3.5e-16 Score=150.16 Aligned_cols=122 Identities=11% Similarity=0.027 Sum_probs=83.6
Q ss_pred e-EEEEEecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcC
Q 005185 542 W-APIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSG 620 (710)
Q Consensus 542 ~-i~v~v~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~ 620 (710)
. +.|..|.|+|.... ..+|++||||||||||+++++++....+ .+++|+ |+|+.+ |.+|.+||++++.+
T Consensus 6 ~vl~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~------~~v~l~-g~r~~~-d~~~~~el~~l~~~- 75 (158)
T 3lrx_A 6 SLLNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR- 75 (158)
T ss_dssp ------CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT------CEEEEE-EECBGG-GCCSHHHHHHHSSE-
T ss_pred EeeEEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhc-
Confidence 5 47888888865433 4689999999999999999999986532 478999 999997 99999999998642
Q ss_pred CCcEEEEEEecCC------C--CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 621 ALSQLIVAFSREG------P--TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 621 ~~~~l~~a~Sr~~------~--~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
..+..+++++. + .+++|++.+.+. +.+ .+...||+||| ++|+++|.+.|.+..
T Consensus 76 --~~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~---l~~--~~~~~vy~CGP-~~mm~~v~~~l~~~G 136 (158)
T 3lrx_A 76 --HIVEPVPLNPNQDFLANMKNVSQRLKEKVREL---LES--EDWDLVFMVGP-VGDQKQVFEVVKEYG 136 (158)
T ss_dssp --EEECCBCCCTTSCHHHHHHHHHHHHHHHHHHH---HHH--SCCSEEEEESC-HHHHHHHHHHHGGGT
T ss_pred --eEEEEeeccccccCCCCCCCCcccccHHHHHh---hcc--CCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 12222233321 1 245666544331 111 24568999999 999999999887543
No 54
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.61 E-value=6.8e-16 Score=145.51 Aligned_cols=120 Identities=11% Similarity=0.044 Sum_probs=84.5
Q ss_pred EEEEecCCCcCCCCCCCCeEEEecCCcchHHHHHHHHHHHhhhhCCCCCcEEEEEeecCCCcccchHHHHHHHHHcCCCc
Q 005185 544 PIFVRQSNFKLPADAKVPIIMIGPGTGLAPFRGFLQERFALQEAGAELGPSLLFFGCRNRKMDYIYEDELNNFVQSGALS 623 (710)
Q Consensus 544 ~v~v~~g~F~lp~~~~~piImIa~GTGIAPfrs~l~~~~~~~~~~~~~~~~~Lf~G~R~~~~D~ly~dEL~~~~~~~~~~ 623 (710)
.|.+|.|+|.... ..++++||||||||||+++++++..+.+ .+++|+ |+|+++ |.+|++||+++..+ .
T Consensus 4 ~v~GP~G~~~~~~-~~~~~llIaGG~GiaPl~sm~~~l~~~~------~~v~l~-g~R~~~-~~~~~~el~~l~~~---~ 71 (142)
T 3lyu_A 4 NVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG------NDVTTL-HVTFEP-MVILKEELEKAVTR---H 71 (142)
T ss_dssp ---CCCSCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHTT------CEEEEE-EEEEGG-GCCSHHHHHTTSSE---E
T ss_pred eeeCCCCCCccCC-CCCeEEEEECcCcHHHHHHHHHHHHhcC------CcEEEE-EeCCHH-HhhHHHHHHHHHhh---e
Confidence 4677888876553 3689999999999999999999887532 468999 999997 99999999987542 1
Q ss_pred EEEEEEecCCC--------CcccccchhhcchhHHhhcccCCcEEEEecCchhhHHHHHHHHHHHH
Q 005185 624 QLIVAFSREGP--------TKEYVQHKMMEKSSDIWNMLSEGAYLYVCGDAKSMARDVHRTLHTIV 681 (710)
Q Consensus 624 ~l~~a~Sr~~~--------~k~yVq~~l~~~~~~v~~~l~~~~~iyvCGpa~~M~~~V~~~L~~i~ 681 (710)
.+..+++++.. .+++|.+.+.+. ... .+...||+||| ++|+++|.+.+.+..
T Consensus 72 ~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~----~~~-~~~~~vy~CGP-~~Mm~av~~~l~~~~ 131 (142)
T 3lyu_A 72 IVEPVPLNPNQDFLANMKNVSQRLKEKVREL----LES-EDWDLVFMVGP-VGDQKQVFEVVKEYG 131 (142)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHHHHH----HHS-SCCSEEEEESC-HHHHHHHHHHHHHHT
T ss_pred EEEEeecccccCCCCCCCCCccchhHHHHHh----ccc-CCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 23334443211 245666544332 111 24568999999 899999999887653
No 55
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=99.60 E-value=4.1e-16 Score=146.29 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=86.7
Q ss_pred ceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHH
Q 005185 105 QKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYK 184 (710)
Q Consensus 105 ~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~ 184 (710)
|++.|+|+|+||||+.+|++|++. . .+++.+ .+..++.+++++||||+|++|+++.+|++
T Consensus 9 m~i~I~Y~S~TGNt~~vA~~l~~~-------~---~~~i~~----------~~~~~~~~ilv~pTyG~G~~P~~v~~Fl~ 68 (139)
T 1rlj_A 9 AMVQIIFDSKTGNVQRFVNKTGFQ-------Q---IRKVDE----------MDHVDTPFVLVTYTTNFGQVPASTQSFLE 68 (139)
T ss_dssp SCCEEEECCSSSHHHHHHTTSCCS-------E---EEETTS----------CSCCCSCEEEEECCBGGGBCCHHHHHHHH
T ss_pred CEEEEEEECCChhHHHHHHHhccc-------c---ceEecc----------ccccCCCEEEEEcCcCCCcCcHHHHHHHH
Confidence 467999999999999999988642 0 123322 13455778999999999999999998884
Q ss_pred HHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHH
Q 005185 185 WFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWP 258 (710)
Q Consensus 185 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~ 258 (710)
. ..++.|+|||+||++| +.||.+++.+++++ |...+... +.+-.....+.+.+|.+++|.
T Consensus 69 ~----------~~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~~~~-el~g~~~D~~~~~~~~~~~~~ 129 (139)
T 1rlj_A 69 K----------YAHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILHKF-ELSGTSKDVELFTQEVERVVT 129 (139)
T ss_dssp H----------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEEEE-ETTCCHHHHHHHHHHHHHHHH
T ss_pred h----------CCCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCcceE-EEcCCHHHHHHHHHHHHHHHH
Confidence 2 1347899999999999 78999999988776 44332221 111111234568899988875
No 56
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.38 E-value=1.2e-12 Score=144.17 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=99.3
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeE---EecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCch
Q 005185 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFK---VVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDN 178 (710)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~---v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdn 178 (710)
...++|+|+|+|++||||++|+.|++.+.++| ..+. +.|++..+. .++..++.+++.+||++||| +|++++.
T Consensus 263 ~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~G--v~~~~~~~~d~~~~~~--s~i~~~i~~~~~ivlGspT~-~~~~~p~ 337 (410)
T 4dik_A 263 PKKGKVTVIYDSMYGFVENVMKKAIDSLKEKG--FTPVVYKFSDEERPAI--SEILKDIPDSEALIFGVSTY-EAEIHPL 337 (410)
T ss_dssp CCTTEEEEEEECSSSHHHHHHHHHHHHHHHTT--CEEEEEEECSSCCCCH--HHHHHHSTTCSEEEEEECCT-TSSSCHH
T ss_pred ccccceeeEEecccChHHHHHHHHHHHHHhcC--CceEEEEeccCCCCCH--HHHHHHHHhCCeEEEEeCCc-CCcCCHH
Confidence 34568999999999999999999999999887 3333 344444333 34567788999999999999 6888889
Q ss_pred HHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005185 179 AARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (710)
Q Consensus 179 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (710)
++.|+..+... .++|+++++|| +|.|.+.+++.+.++|+++|++.+-+
T Consensus 338 ~~~~l~~l~~~-----~~~~K~~~~FG----SyGWsg~a~~~~~~~l~~~~~~~v~~ 385 (410)
T 4dik_A 338 MRFTLLEIIDK-----ANYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSF 385 (410)
T ss_dssp HHHHHHHHHHH-----CCCCCEEEEEE----ECCCCCTTSCCHHHHHTTSSCEEEEE
T ss_pred HHHHHHHHHhc-----ccCCCEEEEEE----CCCCCcHHHHHHHHHHHHCCCEEECc
Confidence 99999998865 47899999999 68888999999999999999986544
No 57
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.35 E-value=3.9e-12 Score=139.39 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=113.7
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
.++++|+|+|+||||+.+|+.|++.+.+.+ ..++++++.+.+.+ +..+++.+++.+||++||||.|.+| .+..|+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g--~~v~~~~~~~~~~~--~~~~~~~~~d~ii~gsp~~~~~~~~-~~~~~l 326 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEG--CTVKLMWCKACHHS--QIMSEISDAGAVIVGSPTHNNGILP-YVAGTL 326 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEETTTSCHH--HHHHHHHTCSEEEEECCCBTTBCCH-HHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECCccCCCchH-HHHHHH
Confidence 589999999999999999999999998764 46788898876542 3345678999999999999766655 799999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCC--CCCchhhHHHHHHHHHHHHH
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDD--DQCIEDDFSAWRELVWPELD 261 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~--~~~~e~~f~~W~~~l~~~L~ 261 (710)
+++... .++++++++||. |.++|.+.+.+.+.|..+|++.+.+....+. +....+.+.+|.+++...+.
T Consensus 327 ~~l~~~-----~l~~k~~~~f~t----~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~ 397 (402)
T 1e5d_A 327 QYIKGL-----RPQNKIGGAFGS----FGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALK 397 (402)
T ss_dssp HHHHHT-----CCCSCEEEEEEE----ESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhc-----ccCCCEEEEEEc----CCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 998753 478999999995 6678999999999999999998864322221 22233456778877776665
Q ss_pred hh
Q 005185 262 NL 263 (710)
Q Consensus 262 ~~ 263 (710)
+.
T Consensus 398 ~~ 399 (402)
T 1e5d_A 398 AK 399 (402)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 58
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=99.35 E-value=6.7e-12 Score=124.03 Aligned_cols=128 Identities=13% Similarity=-0.017 Sum_probs=102.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcch-------------HHHHhhcCCCeEEEEecCC
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEED-------------EYEEKLKKENIVFFFLATY 170 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~-------------~~~~~l~~~~~~if~~sTy 170 (710)
|++|+|+|+|.+|||+.+|+.|++.+.+.+ ..++++|+.++..... ...+++.+++.+||++|||
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y 82 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGG--FEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR 82 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECB
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCC--CEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChh
Confidence 579999999999999999999999998765 5678888877421000 1135688999999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005185 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (710)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (710)
.|.+|..++.|++++.... ....++++++++|+.+...+..++.+...+.+.|..+|++.+.+
T Consensus 83 -~~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 83 -FGNMASPLKYFLDGTSSLW-LTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp -TTBCCHHHHHHHHTCHHHH-HHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred -ccCccHHHHHHHHHHHHHh-hccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 7999999999999886421 01247899999999988776666788899999999999987653
No 59
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.35 E-value=2.2e-12 Score=141.16 Aligned_cols=119 Identities=16% Similarity=0.081 Sum_probs=99.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFY 183 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~ 183 (710)
.++++|+|+|+||||+.+|+.+++.+.+.+ ..++++|+.+.+.. ++..++.+++.+||++|||+.|.+| .++.|+
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g--~~v~~~~~~~~~~~--~~~~~~~~~d~ii~g~p~y~~~~~~-~~~~~l 325 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGG--CEVKLFKLSVSDRN--DVIKEILDARAVLVGSPTINNDILP-VVSPLL 325 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGSCHH--HHHHHHHHCSEEEEECCCBTTBCCG-GGHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcC--CeEEEEECCCCCHH--HHHHHHHHCCEEEEECCccCccchH-HHHHHH
Confidence 578999999999999999999999998765 46788888776542 2345577899999999999666666 599999
Q ss_pred HHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccc
Q 005185 184 KWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPV 236 (710)
Q Consensus 184 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~ 236 (710)
+++... .++++++++||. |.++|.+.+.+++.|..+|++.+.+.
T Consensus 326 ~~l~~~-----~~~~k~~~~~~s----~g~~~~a~~~l~~~l~~~g~~~~~~~ 369 (398)
T 1ycg_A 326 DDLVGL-----RPKNKVGLAFGA----YGWGGGAQKILEERLKAAKIELIAEP 369 (398)
T ss_dssp HHHHHH-----CCSSCEEEEEEE----ESSSCCHHHHHHHHHHHTTCEESCSS
T ss_pred HHHhcc-----ccCCCEEEEEEe----CCCchHHHHHHHHHHHHCCeEEecCc
Confidence 999754 378999999995 67789999999999999999988653
No 60
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.34 E-value=9e-12 Score=122.50 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=110.6
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (710)
|++|+|+|+|+||||+.+|+.|++.+.+ .+ ..++++|+.+.+. +++.+++.+||++||| .|.+|+.++.|
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g--~~v~~~~l~~~~~------~~l~~aD~ii~gsP~y-~g~~~~~lk~f 74 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEG--TEVRLKHVDEATK------EDVLWADGLAVGSPTN-MGLVSWKMKRF 74 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTT--EEEEEEETTTCCH------HHHHHCSEEEEEEECB-TTBCCHHHHHH
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCC--CeEEEEEhhhCCH------HHHHhCCEEEEEeCcc-CCcCCHHHHHH
Confidence 6799999999999999999999999987 54 5678999988763 4578899999999999 99999999999
Q ss_pred HHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccc------c-----c---ccCCC-CCch
Q 005185 183 YKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVP------V-----G---LGDDD-QCIE 246 (710)
Q Consensus 183 ~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~l~~------~-----g---~gD~~-~~~e 246 (710)
++++.... ...++++++++||. |+.. ..+..+.+.+.+.|..+|+..+.. . | .+.-+ ....
T Consensus 75 ld~~~~~~--~~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~ 151 (188)
T 2ark_A 75 FDDVLGDL--WGEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSEEEK 151 (188)
T ss_dssp HHHTGGGT--TTSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESSCCSHHHH
T ss_pred HHHHhhhh--HHHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCccccccccCCCcceeecCCCcHHHH
Confidence 99987510 12488999999998 5433 224566677888888888865421 0 1 11111 1123
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 005185 247 DDFSAWRELVWPELDNLL 264 (710)
Q Consensus 247 ~~f~~W~~~l~~~L~~~~ 264 (710)
+....|-+.+...+.++.
T Consensus 152 ~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 152 EACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 446677777777776553
No 61
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=99.33 E-value=3.4e-12 Score=119.97 Aligned_cols=98 Identities=17% Similarity=0.411 Sum_probs=74.2
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCC----CCCCCchH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYG----DGEPTDNA 179 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG----~G~~pdna 179 (710)
++..+|+|+|.||||+.|+++|... ..+ +++.+ . +.+..++.+|+++|||| .|+.|+.+
T Consensus 20 ~~~~ivYfsS~TGNT~rFv~kL~~~--------~~~-I~~~~--~------~~~~~~ep~vlv~PTYg~g~~~G~vP~~v 82 (153)
T 3n3a_C 20 HMSQLVYFSSSSENTQRFIERLGLP--------AVR-IPLNE--R------ERIQVDEPYILIVPSYGGGGTAGAVPRQV 82 (153)
T ss_dssp ---CEEECCCTTCHHHHHHHHHCSC--------CEE-CCSST--T------CCCCCCSCEEEEEECCTTSSSSSSSCHHH
T ss_pred cceeEEEEECCCcCHHHHHHHhCCc--------ccc-ccccc--C------cccccCCCEEEEEeccCCCCcCCcCcHHH
Confidence 4556899999999999999887421 122 23321 1 12345678999999999 59999999
Q ss_pred HHHHHHHHhhcCCCCCcCCceEEEEeccCCch-HHHHHHHHHHHHHHH
Q 005185 180 ARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQY-EHFNKIAKVVDEILA 226 (710)
Q Consensus 180 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~ 226 (710)
.+|++.+.+ .++.++|+|.||++| +.||.+++.+.+++.
T Consensus 83 ~dFl~~~~n--------~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~ 122 (153)
T 3n3a_C 83 IRFLNDEHN--------RALLRGVIASGNRNFGEAYGRAGDVIARKCG 122 (153)
T ss_dssp HHHHTSHHH--------HHHEEEEEEEECGGGGGGTTHHHHHHHHHHT
T ss_pred HHHHhhhcc--------cCcEEEEEecCCCchhHHHHHHHHHHHHHhC
Confidence 999876643 356799999999998 999999999999885
No 62
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.26 E-value=3.3e-11 Score=132.70 Aligned_cols=146 Identities=14% Similarity=0.005 Sum_probs=110.8
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHH
Q 005185 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (710)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (710)
.+++|+|+|+|.||||+++|+.|++.+.+.+ ..++++|+.+.+.. +..+++.+++.+||++||| .|.+|..++.|
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g--~~v~~~~l~~~~~~--~~~~~l~~~D~iiigsP~y-~~~~~~~~k~f 329 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTG--CETVLLEMTSSDIT--KVALHTYDSGAVAFASPTL-NNTMMPSVAAA 329 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEEGGGCCHH--HHHHHHHTCSEEEEECCCB-TTBCCHHHHHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCC--CeEEEEEcCcCCHH--HHHHHHHhCCEEEEEcCcc-CcCchHHHHHH
Confidence 3689999999999999999999999998764 46788898876642 2334688999999999999 67777779999
Q ss_pred HHHHHhhcCCCCCc-CCceEEEEeccCCchHHHHHHHHHHHHHHHH-cCCcccccc-cc--cCCCCCchhhHHHHHHHHH
Q 005185 183 YKWFTEQKEGGEWL-QKLKYGVFGLGNRQYEHFNKIAKVVDEILAN-QGAKRLVPV-GL--GDDDQCIEDDFSAWRELVW 257 (710)
Q Consensus 183 ~~~L~~~~~~~~~l-~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~-lGa~~l~~~-g~--gD~~~~~e~~f~~W~~~l~ 257 (710)
++++... .+ +++++++||.|+.. +.+.+.+.+.|.. +|++.+.+. .. +.-+....+...+|.+++.
T Consensus 330 ld~l~~~-----~~~~~K~~~~~~t~g~~----~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~g~~l~ 400 (414)
T 2q9u_A 330 LNYVRGL-----TLIKGKPAFAFGAFGWS----NRAVPDIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAGVDLG 400 (414)
T ss_dssp HHHHHHH-----TTTTTSBEEEEEEESSS----CCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-----cccCCCEEEEEEecCCC----chhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHHHHHHHHHHHHHH
Confidence 9999753 36 89999999987543 5577899999999 999987643 11 2212222345666766666
Q ss_pred HHHHh
Q 005185 258 PELDN 262 (710)
Q Consensus 258 ~~L~~ 262 (710)
..+.+
T Consensus 401 ~~~~~ 405 (414)
T 2q9u_A 401 KRAIA 405 (414)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 63
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.24 E-value=5.3e-11 Score=117.36 Aligned_cols=125 Identities=17% Similarity=0.102 Sum_probs=98.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHh-hcCCceeEEecCCCCCCcc--------------hHHHHhhcCCCeEEEEec
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARA-RYDKAIFKVVDIDDYADEE--------------DEYEEKLKKENIVFFFLA 168 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~-~~~~~~v~v~dl~~~~~~~--------------~~~~~~l~~~~~~if~~s 168 (710)
|++|+|+|+|.+|||+.+|+.|++.+.+ .+ ..++++|+.+..... .+ .+++.+++.+||++|
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~gsP 77 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDG--AEVVVKRVPETMPPQLFEKAGGKTQTAPVAT-PQELADYDAIIFGTP 77 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTT--CEEEEEECCCCSCHHHHHHTTCCCCCSCBCC-GGGGGGCSEEEEEEE
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCC--CEEEEEEccccCchhhhhhcccccccCchhh-HHHHHHCCEEEEEeC
Confidence 5789999999999999999999999987 54 567889987752110 01 356889999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
|| .|.+|..++.|++++.... ....++++++++|+.+... .....+.+.+...|..+|+..+.
T Consensus 78 ~y-~~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 78 TR-FGNMSGQMRTFLDQTGGLW-ASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp EE-TTEECHHHHHHHTTCHHHH-HHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred hh-cCCchHHHHHHHHHhhhhh-hhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 99 9999999999999886421 0124889999999987655 44556778888899999987654
No 64
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.23 E-value=2.3e-11 Score=133.28 Aligned_cols=148 Identities=16% Similarity=0.114 Sum_probs=111.1
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHH
Q 005185 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (710)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (710)
...++++|+|+|+||||+.+|+.|++.+.+.+ ..++++|+.+++. ..+..++.+++.+||++||| .|.+|..++.
T Consensus 254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g--~~v~~~~~~~~~~--~~~~~~l~~~d~iiigsP~y-~~~~~~~~k~ 328 (404)
T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEG--VDVRVYCLHEDDR--SEIVKDILESGAIALGAPTI-YDEPYPSVGD 328 (404)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTT--CEEEEEETTTSCH--HHHHHHHHTCSEEEEECCEE-TTEECTHHHH
T ss_pred CCCCcEEEEEECCChHHHHHHHHHHHHHHhCC--CeEEEEECCCCCH--HHHHHHHHHCCEEEEECccc-cccchHHHHH
Confidence 35689999999999999999999999998754 5678899988764 23345788999999999999 5777778999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccc-cCCCCCchhhHHHHHHHHHHHH
Q 005185 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL-GDDDQCIEDDFSAWRELVWPEL 260 (710)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~-gD~~~~~e~~f~~W~~~l~~~L 260 (710)
|++++..... .. ++++++++||.|+.. +.+.+.+.+.|..+|++.+.+... +..+....+...+|.+++...+
T Consensus 329 ~ld~l~~~~~-~~-l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
T 2ohh_A 329 LLMYLRGLKF-NR-TLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVACEEEVYYVPTGDELDACFEAGRKLAAEI 402 (404)
T ss_dssp HHHHHHHHCG-GG-TCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEEEEEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccc-cc-cCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEEeEEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 9999975421 12 689999999987654 567789999999999998766221 1112223344566666654433
No 65
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.21 E-value=4.1e-11 Score=115.17 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=90.0
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcc--------------------h---HHHHhhcCC
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEE--------------------D---EYEEKLKKE 160 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~--------------------~---~~~~~l~~~ 160 (710)
+++++|+|.|+||||+.+|+.|++.+.... +.+.+...|..++ . ....++.++
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~~~----~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~y 79 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGADL----YEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKY 79 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTCEE----EECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGC
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCCCe----EEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhhC
Confidence 468999999999999999999999885421 2333333322100 0 011357789
Q ss_pred CeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCccccccccc
Q 005185 161 NIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLVPVGLG 239 (710)
Q Consensus 161 ~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~g 239 (710)
+.+||++||| .|.+|..+..|++.+ .++|+++++|+. |++.+ ..+.+.+.+.|. |++-+ + |..
T Consensus 80 d~iilG~P~~-~g~~~~~~~~fl~~~--------~l~gk~v~~f~t~g~~~~---g~~~~~l~~~l~--~~~~~-~-g~~ 143 (162)
T 3klb_A 80 EVLFVGFPVW-WYIAPTIINTFLESY--------DFAGKIVVPFATSGGSGI---GNCEKNLHKAYP--DIVWK-D-GKL 143 (162)
T ss_dssp SEEEEEEECB-TTBCCHHHHHHHHTS--------CCTTCEEEEEEECSSCCS---HHHHHHHHHHCT--TSEEC-C-CEE
T ss_pred CEEEEEcccc-cCCCCHHHHHHHHhc--------CCCCCEEEEEEEeCCCCc---cHHHHHHHHHcC--CCEee-c-ceE
Confidence 9999999999 799999888886653 378999999996 54445 345666777665 55533 2 111
Q ss_pred CCCCCchhhHHHHHHHH
Q 005185 240 DDDQCIEDDFSAWRELV 256 (710)
Q Consensus 240 D~~~~~e~~f~~W~~~l 256 (710)
-.....++++.+|.+++
T Consensus 144 ~~g~~~~~~v~~W~~~~ 160 (162)
T 3klb_A 144 LNGQITRDLVTEWFEKI 160 (162)
T ss_dssp CCSCCCHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHHh
Confidence 11224578899998764
No 66
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.19 E-value=1.1e-10 Score=115.20 Aligned_cols=125 Identities=12% Similarity=0.006 Sum_probs=98.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCC----------------cchHHHHhhcCCCeEEEEe
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYAD----------------EEDEYEEKLKKENIVFFFL 167 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~----------------~~~~~~~~l~~~~~~if~~ 167 (710)
|++|+|+|+| +|||+.+|+.+++.+.+.+ ..++++|+.+. . ...+ .+++.+.+.+||++
T Consensus 4 mmkilii~~S-~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~-~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gs 78 (199)
T 2zki_A 4 KPNILVLFYG-YGSIVELAKEIGKGAEEAG--AEVKIRRVRET-LPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGS 78 (199)
T ss_dssp CCEEEEEECC-SSHHHHHHHHHHHHHHHHS--CEEEEEECCCC-SCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEE
T ss_pred CcEEEEEEeC-ccHHHHHHHHHHHHHHhCC--CEEEEEehhHh-CChhhhhccCCCccccccccc-HHHHHhCCEEEEEC
Confidence 5799999999 9999999999999998765 56788888775 1 0001 45688899999999
Q ss_pred cCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005185 168 ATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (710)
Q Consensus 168 sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (710)
|+| .|.+|..++.|++++...- ....++++++++|+.+...+.....+.+.+.+.|..+|+..+.+
T Consensus 79 P~y-~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~ 144 (199)
T 2zki_A 79 PTR-YGNMAGGLKTFLDTTAILW-KDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPI 144 (199)
T ss_dssp ECB-TTBCCHHHHHHHHTTHHHH-HTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCC
T ss_pred Ccc-ccCccHHHHHHHHHhhhcc-cccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCC
Confidence 999 7999999999999875321 01248899999999876655434567788999999999886543
No 67
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.18 E-value=1.1e-10 Score=115.34 Aligned_cols=121 Identities=16% Similarity=0.147 Sum_probs=95.2
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCC-CCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHH
Q 005185 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY-ADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (710)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~-~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (710)
.+++|+|+|+|.||||+.+|+.|++.+.+. .+++.++ +.. +...+++.+++.+||++||| .|.+|..++.
T Consensus 5 ~~~kiliiy~S~~GnT~~lA~~ia~~l~~~-------~~~v~~~~~~~-~~~~~~l~~~D~ii~gsP~y-~g~~~~~~k~ 75 (193)
T 3d7n_A 5 SSSNTVVVYHSGYGHTHRMAEAVAEGAEAT-------LHAIDAEGNLS-EDGWAALDAADAIIFGTPTY-MGGPSWQFKK 75 (193)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCE-------EEECCTTSCCC-HHHHHHHHHCSEEEEEEEEE-TTEECHHHHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHhhhc-------ceEeeecCCCC-HhHHHHHHHCCEEEEEeCcc-CCCccHHHHH
Confidence 467899999999999999999999999753 2344443 111 11345788999999999999 6999999999
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 182 FYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
|++++...- ....++++++++|+.+...+..+..+...+...|..+|+..+
T Consensus 76 fld~~~~~~-~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~v 126 (193)
T 3d7n_A 76 FADASSKPW-FSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWV 126 (193)
T ss_dssp HHHHTHHHH-HTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHhhhhc-cccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEe
Confidence 999886311 012488999999999888777777888999999999998754
No 68
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.17 E-value=9.1e-11 Score=117.19 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=101.4
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCC--------------------CCcchHHHHhhcCCCe
Q 005185 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDY--------------------ADEEDEYEEKLKKENI 162 (710)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~--------------------~~~~~~~~~~l~~~~~ 162 (710)
.+++|+|+|+|.+|||+.+|+.|++.+.+.+ ..++++|+.+. +.. ....+++..++.
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~l~~aD~ 81 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAG--AEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVP-EATPADLEWAEA 81 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSC-BCCHHHHHHCSE
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCC--CEEEEEeccccccchhhhcccccccccccccchh-HHHHHHHHHCCE
Confidence 4689999999999999999999999998765 56788998775 210 122457888999
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005185 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (710)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (710)
+||++|+| .|.+|..++.|++++...- ....++++++++|+.+...+..+..+...+...|..+|+..+.+
T Consensus 82 ii~gsP~y-~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 82 IVFSSPTR-FGGATSQMRAFIDTLGGLW-SSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp EEEEEEEE-TTEECHHHHHHHHTTHHHH-HTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred EEEEcCcc-ccCccHHHHHHHHHhcccc-ccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 99999999 7999999999999875321 01248899999999876665444677888999999999886644
No 69
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.15 E-value=1.5e-10 Score=112.37 Aligned_cols=135 Identities=14% Similarity=0.191 Sum_probs=90.9
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcch-----------------------HHHHhhc
Q 005185 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEED-----------------------EYEEKLK 158 (710)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~-----------------------~~~~~l~ 158 (710)
..+++++|+|.|.||||+.+|+.|++.+... .+++.+...|..++- ....++.
T Consensus 11 ~~~mkilIvY~S~tGnT~~vA~~Ia~~l~~d----~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 86 (171)
T 4ici_A 11 HSNSKILVAYFSATGTTARAAEKLGAAVGGD----LYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIG 86 (171)
T ss_dssp --CCCEEEEECCSSSHHHHHHHHHHHHHTCE----EEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGG
T ss_pred cCCCCEEEEEECCCChHHHHHHHHHHHhCCC----eEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHh
Confidence 4578899999999999999999999998532 133333333321000 0013578
Q ss_pred CCCeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccc
Q 005185 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 238 (710)
Q Consensus 159 ~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~ 238 (710)
.++.+||++||| .|.+|..+..|++.+ .++++++++|+.+... .+..+.+.+.+.|. |++- .+-..
T Consensus 87 ~yD~iilg~Pvy-~g~~~~~~~~fl~~~--------~l~gk~v~~f~t~g~~--~~g~a~~~l~~~l~--~~~~-~~g~~ 152 (171)
T 4ici_A 87 TYDVVFIGYPIW-WDLAPRIINTFIEGH--------SLKGKTVVPFATSGGS--SIGNSATVLKKTYP--DLNW-KEGRL 152 (171)
T ss_dssp GCSEEEEEEECB-TTBCCHHHHHHHHHS--------CCTTSEEEEEEECSSC--CSHHHHHHHHHHST--TSEE-CCCEE
T ss_pred HCCEEEEecccc-cCCchHHHHHHHHHc--------CCCcCEEEEEEecCCC--CcchHHHHHHHHcC--CCee-ccCeE
Confidence 899999999999 689999888887665 3789999999974322 13456677777775 4553 22211
Q ss_pred cCCCCCchhhHHHHHHHH
Q 005185 239 GDDDQCIEDDFSAWRELV 256 (710)
Q Consensus 239 gD~~~~~e~~f~~W~~~l 256 (710)
.. ...++++..|.+++
T Consensus 153 ~~--~~~~~~i~~Wl~~~ 168 (171)
T 4ici_A 153 LN--RTDEKAIRAWLDVI 168 (171)
T ss_dssp CS--SCCHHHHHHHHHHH
T ss_pred ec--CCCHHHHHHHHHHh
Confidence 11 13578899998775
No 70
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.08 E-value=1.7e-10 Score=114.27 Aligned_cols=122 Identities=11% Similarity=0.079 Sum_probs=96.6
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHH-HHhhcCCceeEEecCCCCCC-----------cchHHHHhhcCCCeEEEEecC
Q 005185 104 KQKVTIFFGTQ--TGTAEGFAKALADE-ARARYDKAIFKVVDIDDYAD-----------EEDEYEEKLKKENIVFFFLAT 169 (710)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~-l~~~~~~~~v~v~dl~~~~~-----------~~~~~~~~l~~~~~~if~~sT 169 (710)
|++|+|+|||. +|+|+.+|+.+++. +.+.+ ..++++|+.++.. +-..+.+++...+.+||++|+
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g--~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~ 79 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSD--SQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPI 79 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSS--EEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCC--CeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCc
Confidence 57899999997 79999999999999 88764 5678899987643 112234568889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
| +|.+|..++.|++|+.. ..++++++++|+.|... .+++.....+...|..+|++.+.
T Consensus 80 y-~~~~p~~lK~~ld~l~~-----~~~~gK~~~~~~tgg~~-~~~~a~~~~l~~~l~~~g~~~v~ 137 (197)
T 2vzf_A 80 Y-KASYTGLLKAFLDILPQ-----FALAGKAALPLATGGSP-AHVLALDYGLRPVLHSMGVRHVV 137 (197)
T ss_dssp B-TTBCCHHHHHHHTTSCT-----TTTTTCEEEEEEEESSG-GGGGHHHHTHHHHHHTTTCSEEC
T ss_pred c-CCCCCHHHHHHHHhccc-----cccCCCEEEEEEECCCc-chhhHHHHHHHHHHHHcCCEecc
Confidence 9 79999999999999853 25899999999997654 33332324688999999998764
No 71
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.03 E-value=2.3e-09 Score=105.61 Aligned_cols=157 Identities=11% Similarity=0.047 Sum_probs=116.0
Q ss_pred CceEEEEEeCCC---chHHHHHHHHHHHHHhhcCCceeEEecCCCCCCc---------------------------chHH
Q 005185 104 KQKVTIFFGTQT---GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------------------------EDEY 153 (710)
Q Consensus 104 ~~~v~I~YgSqt---Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------------------------~~~~ 153 (710)
|++|+|+|||.+ |+|+.+|+.+++.+.+.++...++++|+.+++.. ...+
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDEL 80 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 578999999998 9999999999999998764456889999775421 0123
Q ss_pred HHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCchHH--HHHHHHHHHH
Q 005185 154 EEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQYEH--FNKIAKVVDE 223 (710)
Q Consensus 154 ~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~Y~~--f~~~~k~ld~ 223 (710)
.+++...+.+||++|+| .|.+|...+.|++++..... ....++++++++|+.+...|.. |+.+...+..
T Consensus 81 ~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~ 159 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMY-NFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKV 159 (201)
T ss_dssp HHHHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcc-cCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHH
Confidence 46788999999999999 89999999999999863100 0124899999999986666643 5657777888
Q ss_pred HHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHh
Q 005185 224 ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (710)
Q Consensus 224 ~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (710)
.|..+|++.+........+. .++..++|.++....+.+
T Consensus 160 ~l~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 197 (201)
T 1t5b_A 160 FLGFIGITDVNFVFAEGIAY-GPEVAAKAQADAKAAIDS 197 (201)
T ss_dssp HHHHTTCCCEEEEEECCGGG-CHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcceeEEEEEecccC-ChHHHHHHHHHHHHHHHH
Confidence 99999999764443322222 345557887776655544
No 72
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=98.89 E-value=2.9e-09 Score=100.83 Aligned_cols=127 Identities=9% Similarity=0.160 Sum_probs=84.5
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCC-CCCCcc--------------------hHHHHhhcCCCe
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDID-DYADEE--------------------DEYEEKLKKENI 162 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~-~~~~~~--------------------~~~~~~l~~~~~ 162 (710)
+++++|+|.|+||||+++|+.|++++.... .+++...+ .|+.+. .....++..++.
T Consensus 3 ~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~---~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d~ 79 (151)
T 3edo_A 3 AKKTLILYYSWSGETKKMAEKINSEIKDSE---LKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYDL 79 (151)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHSTTCE---EEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCSE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHhccCCC---EEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCCE
Confidence 468999999999999999999999874321 01211111 122100 001235778999
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCC
Q 005185 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDD 242 (710)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~ 242 (710)
+||++||| .|.+|..+..|++.+. .+.++.+++|+.|...+ ..+.+.+.+.|. +++-+-.+.
T Consensus 80 iilG~P~~-~g~~~~~~~~fl~~~~-------~~~~k~~~~~t~gg~~~---g~~~~~l~~~~~--~~~~~~g~~----- 141 (151)
T 3edo_A 80 ILIGSPVW-SGYPATPIKTLLDQMK-------NYRGEVASFFTSAGTNH---KAYVSHFNEWAD--GLNVIGVAR----- 141 (151)
T ss_dssp EEEEEEEE-TTEECTHHHHHHHHTT-------TCCSEEEEEEECSSCCH---HHHHHHHHHHTT--TSEEEEEEE-----
T ss_pred EEEEccee-cccccHHHHHHHHhch-------hcCCEEEEEEEeCCCCC---CcHHHHHHHHcC--CCeeecccc-----
Confidence 99999999 6999999999998764 36788999999887765 334566666664 444321111
Q ss_pred CCchhhHHHHH
Q 005185 243 QCIEDDFSAWR 253 (710)
Q Consensus 243 ~~~e~~f~~W~ 253 (710)
++.++.+|.
T Consensus 142 --~~~~~~~w~ 150 (151)
T 3edo_A 142 --DDSEVDKWS 150 (151)
T ss_dssp --TTTTHHHHH
T ss_pred --cHHHHHHHh
Confidence 124688885
No 73
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=98.81 E-value=2.8e-08 Score=101.43 Aligned_cols=152 Identities=11% Similarity=0.108 Sum_probs=110.7
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhh-cCCceeEEecCCCCCC----------------------cchHHHHhhc
Q 005185 104 KQKVTIFFGTQT--GTAEGFAKALADEARAR-YDKAIFKVVDIDDYAD----------------------EEDEYEEKLK 158 (710)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~-~~~~~v~v~dl~~~~~----------------------~~~~~~~~l~ 158 (710)
|++|+|+|||.. |+|+.+|+.+++.+.+. + ..++++|+.++++ +-.++.+++.
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g--~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~ 78 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNN--VDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELL 78 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSC--CEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcC--CeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHH
Confidence 578999999986 99999999999999876 4 5678899876532 1123446788
Q ss_pred CCCeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccc
Q 005185 159 KENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGL 238 (710)
Q Consensus 159 ~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~ 238 (710)
..+.+||++|+| .|.+|..++.|++++.... ....+.|+++++|+.+... .+..+.+.+...|..+|++.+.+...
T Consensus 79 ~AD~iI~~sP~y-~~~~p~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~G~~~v~~~~~ 154 (242)
T 1sqs_A 79 ESDIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYMGGQILHQVSI 154 (242)
T ss_dssp HCSEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HCCEEEEEcccc-ccCCCHHHHHHHHHHHHhc-cccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHCCCeeeeEEEE
Confidence 999999999999 9999999999999985321 2235899999999764322 12245677888999999987655433
Q ss_pred cCC-CCCchhhHHHHHHHHHHHHH
Q 005185 239 GDD-DQCIEDDFSAWRELVWPELD 261 (710)
Q Consensus 239 gD~-~~~~e~~f~~W~~~l~~~L~ 261 (710)
.+. .....+.+.++.+.+...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~la~~i~ 178 (242)
T 1sqs_A 155 TNSLKDIAEAQLMEATYKIEDVLE 178 (242)
T ss_dssp EGGGGGGHHHHHHHHHHHHHHHHT
T ss_pred eccCChHHHHHHHHHHHHHHHHHh
Confidence 221 11244566677777666554
No 74
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=98.79 E-value=2.5e-08 Score=98.10 Aligned_cols=124 Identities=10% Similarity=0.112 Sum_probs=96.0
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCCCC------------cchHHHHhhcCCCeEEEEecC
Q 005185 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD------------EEDEYEEKLKKENIVFFFLAT 169 (710)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~------------~~~~~~~~l~~~~~~if~~sT 169 (710)
+++|+|+|||.. |+|+.+|+.+++.+. .+ ..++++|+.++.. +-.++.+++...+.+||++|+
T Consensus 6 ~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g--~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~ 82 (193)
T 1rtt_A 6 DIKVLGISGSLRSGSYNSAALQEAIGLVP-PG--MSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPE 82 (193)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHTTCC-TT--CEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHhcc-CC--CeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccc
Confidence 468999999985 999999999999886 33 5678888877432 112234678899999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
| .|.+|...+.|++++.... . ..++++++++|+.+...+. ...+...+...|..+|++.+.
T Consensus 83 y-~~~~p~~lK~~iD~~~~~~-~-~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~ 143 (193)
T 1rtt_A 83 Y-NYSMAGVLKNAIDWASRPP-E-QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN 143 (193)
T ss_dssp E-TTEECHHHHHHHHHHTCSS-S-CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred c-ccCcCHHHHHHHHHhcccc-C-cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence 9 8889999999999997421 1 3589999999998754443 235668888999999998765
No 75
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=98.77 E-value=4e-08 Score=96.26 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=94.9
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhc----CCceeEEecCCCCCC----------------------c-chHHHH
Q 005185 105 QKVTIFFGTQT--GTAEGFAKALADEARARY----DKAIFKVVDIDDYAD----------------------E-EDEYEE 155 (710)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~----~~~~v~v~dl~~~~~----------------------~-~~~~~~ 155 (710)
|+|+|+|||.. |+|+.+|+.+++.+.+.+ +...++++|+.+++. + ...+.+
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHH
Confidence 57999999998 999999999999998753 135678888765322 0 013456
Q ss_pred hhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 156 KLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 156 ~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
++...+.+||++|+| .|.+|...+.|++++.. .++++++++|+.|.... ..+...+...|..+|++.+.
T Consensus 81 ~l~~aD~iI~~sP~y-~~~~p~~lK~~iD~~~~------~l~gK~~~~~~~G~~~~---~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLYH------EWHGKPALVVSYGGHGG---SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCST------TTTTCEEEEEEEETTTT---HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCEEEEEeceE-CCCCCHHHHHHHHHHHh------hcCCCEEEEEEeCCcch---hhHHHHHHHHHHHCCCEEcc
Confidence 788999999999999 89999999999998853 47899999999887432 34667888999999998664
No 76
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=98.75 E-value=2.4e-08 Score=96.59 Aligned_cols=115 Identities=10% Similarity=0.191 Sum_probs=87.8
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCCCC-----c--------chHHHHhhcCCCeEEEEecC
Q 005185 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-----E--------EDEYEEKLKKENIVFFFLAT 169 (710)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-----~--------~~~~~~~l~~~~~~if~~sT 169 (710)
|+|+|+|||.+ |+|+.+|+.+++.+.. +++|+.+++. + -.++.+++.+.+.+||++|+
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~-------~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~ 73 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHT-------DLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPE 73 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTC-------EEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEEC
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcc-------eEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCC
Confidence 47999999998 9999999999988753 3455554432 1 11234578899999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEec-cCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGL-GNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
| +|.+|..++.|++|+... .++|+.+++|+. |... .+..+...+...|..+|+..+-
T Consensus 74 y-~~~~p~~lk~~lD~l~~~-----~~~gK~~~~~~~sgg~~--g~~~a~~~l~~~l~~~g~~~v~ 131 (174)
T 3gfs_A 74 Y-HSGMSGALKNALDFLSSE-----QFKYKPVALLAVAGGGD--GGINALNNMRTVMRGVYANVIP 131 (174)
T ss_dssp S-SSSCCHHHHHHHHTCCHH-----HHTTCEEEEEEECCSTT--CSHHHHHHHHHHHHHTTCEEEE
T ss_pred c-CCCCCHHHHHHHHHhCHh-----hhCCCcEEEEEECCCCh--hHHHHHHHHHHHHHHcCCEEec
Confidence 9 999999999999998643 488999999994 4221 2456778899999999998653
No 77
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=98.67 E-value=1.5e-07 Score=93.50 Aligned_cols=157 Identities=9% Similarity=0.034 Sum_probs=109.9
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCceeEEecCC--CCCCcc---------------------------
Q 005185 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDID--DYADEE--------------------------- 150 (710)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~--~~~~~~--------------------------- 150 (710)
|++|+|+|||.. |+|+.+|+.+.+.+++.++...++++|+. +.....
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQ 80 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHh
Confidence 578999999997 99999999999999987654678889987 644211
Q ss_pred -----hHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCchHHHHHH
Q 005185 151 -----DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQYEHFNKI 217 (710)
Q Consensus 151 -----~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y~~f~~~ 217 (710)
.++.+++...+.+||++|+| .|.+|...+.|++++.... . +...++++++.+|......|.+-..+
T Consensus 81 ~~~~~~~~~~~l~~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~ 159 (208)
T 2hpv_A 81 KVARFNELTDQFLSADKVVIANPMW-NLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFA 159 (208)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHH
T ss_pred hHHHHHHHHHHHHhCCEEEEEeccc-cCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchH
Confidence 11345678899999999999 9999999999999986411 0 11247899999996543445321234
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHh
Q 005185 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (710)
Q Consensus 218 ~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (710)
...+...|.-+|++.+-.+.....+. .++..++|.++......+
T Consensus 160 ~~~l~~~~~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 203 (208)
T 2hpv_A 160 SQYIKAILNFIGVDQVDGLFIEGIDH-FPDRAEELLNTAMTKATE 203 (208)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTT-CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEccccC-CHHHHHHHHHHHHHHHHH
Confidence 45677788889998765544333232 335567777665554443
No 78
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=98.59 E-value=6.7e-07 Score=91.64 Aligned_cols=127 Identities=12% Similarity=0.026 Sum_probs=98.6
Q ss_pred cCCceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCCCCc---------chHHHHhhcCCCeEEEEecCC
Q 005185 102 DGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE---------EDEYEEKLKKENIVFFFLATY 170 (710)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~---------~~~~~~~l~~~~~~if~~sTy 170 (710)
..+++|+|+|||.. |+|+.+|+.+++.+.+.+ ..++++|+.+++.. -.++.+++...+.+||++|+|
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g--~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y 109 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFG--AEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPER 109 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTT--CEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCC--CEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC
Confidence 35689999999985 999999999999998755 56889999876521 123456788999999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
+|.+|...+.|++|+.........++|+++++++.+-..- .. .+...+...|..+|+..+
T Consensus 110 -n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~g-g~-~a~~~Lr~~l~~lg~~~v 169 (247)
T 2q62_A 110 -HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQ-SF-NAVNQMRILGRWMRMITI 169 (247)
T ss_dssp -SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSSC-CC-HHHHHHHHHHHHTTCEEC
T ss_pred -CCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCcc-HH-HHHHHHHHHHHHCCCEEe
Confidence 9999999999999996421111358999999999853321 11 355788888999999865
No 79
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=98.54 E-value=5.2e-07 Score=87.42 Aligned_cols=125 Identities=12% Similarity=0.112 Sum_probs=86.9
Q ss_pred CCceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCCCC------------------cchHHHHhhcCCCe
Q 005185 103 GKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD------------------EEDEYEEKLKKENI 162 (710)
Q Consensus 103 ~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~------------------~~~~~~~~l~~~~~ 162 (710)
++|+|+|+|||.. |+|+.+|+.+++.+ .++++|+.+++. +..+..+++...+.
T Consensus 2 ~mMkilii~~S~r~~g~t~~la~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ 74 (184)
T 1rli_A 2 NAMKIAVINGGTRSGGNTDVLAEKAVQGF-------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHI 74 (184)
T ss_dssp ---CEEEEESSCSSCCHHHHHHHHHHTTT-------CCEEEEC-----------------------CHHHHHHHHHTCSE
T ss_pred CCcEEEEEECCCCCCccHHHHHHHHHcCC-------eEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCE
Confidence 3578999999965 99999999998754 245566654432 11234467889999
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhhcCC------CCCcCCceEEEEeccCCchH-HHHHHHHHHHHHHHHcCCccccc
Q 005185 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEG------GEWLQKLKYGVFGLGNRQYE-HFNKIAKVVDEILANQGAKRLVP 235 (710)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~~~------~~~l~~~~~aVFGlGds~Y~-~f~~~~k~ld~~L~~lGa~~l~~ 235 (710)
+||++|+| .|.+|..++.|++++...... ...++++++++|+.+..... .+..+.+.+...|..+|++.+..
T Consensus 75 ii~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~~ 153 (184)
T 1rli_A 75 LIFATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGY 153 (184)
T ss_dssp EEEEEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEeCcc-ccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccceE
Confidence 99999999 999999999999998642110 01478999999988654322 23446678888899999986643
No 80
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=98.47 E-value=1.1e-06 Score=91.29 Aligned_cols=127 Identities=9% Similarity=-0.000 Sum_probs=98.2
Q ss_pred cCCceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCCCCc----------chHHHHhhcCCCeEEEEecC
Q 005185 102 DGKQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYADE----------EDEYEEKLKKENIVFFFLAT 169 (710)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------~~~~~~~l~~~~~~if~~sT 169 (710)
..+++|+|+|||.. |+++.+|+.+++.+.+.+ ..++++|+.+++.. -.++.+++...+.+||++|+
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G--~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~ 133 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFG--AETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPE 133 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTT--CEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCC--CEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCc
Confidence 45789999999986 999999999999998754 56889998876521 12245678889999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 170 YGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 170 yG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
| +|.+|..++.|++|+.........++++.+++++.+-.. ..+ .+...+...|..+|+..+
T Consensus 134 Y-n~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv 194 (279)
T 2fzv_A 134 R-HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTI 194 (279)
T ss_dssp E-TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEEC
T ss_pred c-ccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEe
Confidence 9 999999999999999642111235899999999985332 222 345678888888998865
No 81
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=98.45 E-value=2.3e-06 Score=84.14 Aligned_cols=126 Identities=12% Similarity=0.141 Sum_probs=95.6
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCc-----------chHHHHhhcCCCeEEEEecCC
Q 005185 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------EDEYEEKLKKENIVFFFLATY 170 (710)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------~~~~~~~l~~~~~~if~~sTy 170 (710)
|++|+|++||. .|+++.+|+.+.+.+. .+ ..++++|+.++..- -.++.+++...+.+||++|+|
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~~--~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y 78 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-DR--AQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY 78 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-TS--SEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-CC--CEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc
Confidence 57999999998 6999999999999986 32 56788888765421 123457789999999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcC-----CCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccccc
Q 005185 171 GDGEPTDNAARFYKWFTEQKE-----GGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVP 235 (710)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~-----~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~ 235 (710)
+|.+|.-.+.|++|+..... ....++|+++++++.+... .+..+...+...|..+|++.+-.
T Consensus 79 -~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v~~ 145 (192)
T 3fvw_A 79 -NYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLVDQ 145 (192)
T ss_dssp -TTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCC
T ss_pred -ccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeeecc
Confidence 99999999999999975210 1235899999999886552 23334577888899999986543
No 82
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=98.42 E-value=3e-06 Score=84.39 Aligned_cols=157 Identities=9% Similarity=0.051 Sum_probs=109.7
Q ss_pred CceEEEEEeCCCc---hHHHHHHHHHHHHHhhcCCceeEEecCCCCCCc----------------------------chH
Q 005185 104 KQKVTIFFGTQTG---TAEGFAKALADEARARYDKAIFKVVDIDDYADE----------------------------EDE 152 (710)
Q Consensus 104 ~~~v~I~YgSqtG---tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~----------------------------~~~ 152 (710)
|++|+|+|||..+ +|..+|+.+.+.+++.+++..++++||.+.+.. ..+
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQ 80 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 6799999999765 599999999999988744456888998655311 112
Q ss_pred HHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhc-------CC-----CCCcCCceEEEEeccC--CchH-----H
Q 005185 153 YEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK-------EG-----GEWLQKLKYGVFGLGN--RQYE-----H 213 (710)
Q Consensus 153 ~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~-------~~-----~~~l~~~~~aVFGlGd--s~Y~-----~ 213 (710)
+.+++...+.+||++|+| ++.+|.-.+.|++++.... .. ...|+|+++.++.... ..|. .
T Consensus 81 ~~~~l~~AD~iV~~~P~y-~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~ 159 (212)
T 3r6w_A 81 LVGELFDSDLLVISTPMY-NFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQA 159 (212)
T ss_dssp HHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGG
T ss_pred HHHHHHhCCEEEEEcCcc-cccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCc
Confidence 345688899999999999 9999999999999994310 11 2258999988886633 2232 1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHh
Q 005185 214 FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDN 262 (710)
Q Consensus 214 f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 262 (710)
+......+...|.-+|.+.+-.+..+..+. .+++.++|.++....+.+
T Consensus 160 ~~~~~~~l~~~l~~~G~~~~~~v~~~g~~~-~~~~~~~~l~~a~~~~~~ 207 (212)
T 3r6w_A 160 MNHADPWLRTALGFIGIDEVTVVAAEGEES-GGRSFEDSCDEAEQRLLA 207 (212)
T ss_dssp GCCSHHHHHHHHHHHTCCEEEEEEECCTTT-CHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHCCCceeEEEEEecccC-CHHHHHHHHHHHHHHHHH
Confidence 233445677778888998774443332222 456777887776665554
No 83
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=98.41 E-value=6.5e-06 Score=82.52 Aligned_cols=157 Identities=13% Similarity=0.040 Sum_probs=113.3
Q ss_pred cCCceEEEEEeCC------CchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCC
Q 005185 102 DGKQKVTIFFGTQ------TGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEP 175 (710)
Q Consensus 102 ~~~~~v~I~YgSq------tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~ 175 (710)
..|++|+|++||. .+.+..+++.+.+.+.+.+ ..++++|+++ ..|-....+++...+.+||++|.| .+.+
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g--~ev~~~dL~~-~~Dv~~~~~~l~~aD~iv~~~P~y-~~~~ 98 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESG--HQVKITTVDQ-GYDIESEIENYLWADTIIYQMPAW-WMGE 98 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTT--CCEEEEEGGG-CCCHHHHHHHHHHCSEEEEEEECB-TTBC
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCC--CEEEEEECCC-ccCHHHHHHHHHhCCEEEEECChH-hccC
Confidence 3478999999997 3688999999999998765 5688899875 223233457789999999999999 9999
Q ss_pred CchHHHHHHHHHhhcC-------------------CCCCcCCceEEEEeccCCchHHHH-------H-----HHHHHHHH
Q 005185 176 TDNAARFYKWFTEQKE-------------------GGEWLQKLKYGVFGLGNRQYEHFN-------K-----IAKVVDEI 224 (710)
Q Consensus 176 pdna~~F~~~L~~~~~-------------------~~~~l~~~~~aVFGlGds~Y~~f~-------~-----~~k~ld~~ 224 (710)
|.-.+.|++++..... ....|+|+++.|+-..+...+.|. . ...-+...
T Consensus 99 p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~~~~l~p~~~~ 178 (218)
T 3rpe_A 99 PWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKA 178 (218)
T ss_dssp CHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCHHHHHHHHHHH
Confidence 9999999998854311 123589999888766555433332 2 11224666
Q ss_pred HHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhhh
Q 005185 225 LANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (710)
Q Consensus 225 L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (710)
|.-+|.+.+-+....+... ++++++|.+++...|.+++
T Consensus 179 l~f~G~~~l~~~~~~g~~~--~~~~~~~~~~~~~~L~~~~ 216 (218)
T 3rpe_A 179 NQFLGMKPLPTFMCNDVIK--QPDIEGDIARYRQHLAENV 216 (218)
T ss_dssp HHHTTCEECCCEEECSTTT--SCCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCEEeceEEEeCCCC--hHHHHHHHHHHHHHHHHhc
Confidence 7778999877666655443 4578888888877777654
No 84
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=98.35 E-value=1.9e-06 Score=84.74 Aligned_cols=125 Identities=9% Similarity=0.125 Sum_probs=95.5
Q ss_pred cCCceEEEEEeCCC--chHHHHHHHHHH----HHHhhcCCceeEEecCCCCCC------------c-chHHHHhhcCCCe
Q 005185 102 DGKQKVTIFFGTQT--GTAEGFAKALAD----EARARYDKAIFKVVDIDDYAD------------E-EDEYEEKLKKENI 162 (710)
Q Consensus 102 ~~~~~v~I~YgSqt--Gtae~~A~~la~----~l~~~~~~~~v~v~dl~~~~~------------~-~~~~~~~l~~~~~ 162 (710)
..|.+|+++.||.. |++..+|+.+.+ .+++++....++++|+.++.. + -.++.+++...+.
T Consensus 9 ~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ 88 (191)
T 3k1y_A 9 SHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDG 88 (191)
T ss_dssp CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSE
T ss_pred hhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCE
Confidence 35789999999975 889999999999 666554346688888876542 1 1134567889999
Q ss_pred EEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 163 VFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 163 ~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
+||++|+| +|.+|..++.|++|+.. ..+.|++.++++.|... .+.......+...|..+|+..+
T Consensus 89 ivi~sP~Y-~~~~~~~lK~~iD~~~~-----~~l~gK~~~~v~t~G~~-~~~~~~~~~L~~il~~lg~~vv 152 (191)
T 3k1y_A 89 LVVATPVF-KASYTGLFKMFFDILDT-----DALTGMPTIIAATAGSA-RHSLVLDYALRPLLSYMRAVVV 152 (191)
T ss_dssp EEEEEECB-TTBSCHHHHHHHHHSCT-----TTTTTCEEEEEEEESSS-TTTTHHHHTHHHHHHHTTCEEC
T ss_pred EEEEcCcc-CCcCcHHHHHHHHHhhh-----hhcCCCEEEEEEeCCCc-chhhHHHHHHHHHHHHCCCEEc
Confidence 99999999 99999999999999964 25899999999987433 2332222337788889999865
No 85
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=98.30 E-value=6.7e-06 Score=81.38 Aligned_cols=124 Identities=10% Similarity=0.106 Sum_probs=94.9
Q ss_pred CceEEEEEeC--CCchHHHHHHHHHHHHHhhcCCceeE-EecCCCCCC------------cchHHHHhhcCCCeEEEEec
Q 005185 104 KQKVTIFFGT--QTGTAEGFAKALADEARARYDKAIFK-VVDIDDYAD------------EEDEYEEKLKKENIVFFFLA 168 (710)
Q Consensus 104 ~~~v~I~YgS--qtGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~------------~~~~~~~~l~~~~~~if~~s 168 (710)
+++|+|++|| ..|+++.+|+.+++.+.+ ...++ ++|+.+... +-.++.+++...+.+||++|
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~~---g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP 82 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPE---GIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCCT---TEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEEC
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHccC---CCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcC
Confidence 4689999999 669999999999887742 25577 788765432 11234566889999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
+| +|..|.-.+.|++|+... ....+.||++++++.+...+... .+...+...|..+|+..+-
T Consensus 83 ~Y-~~s~p~~LK~~iD~~~~~--~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~ 144 (199)
T 4hs4_A 83 EY-NYSVPGVLKNAIDWLSRV--SPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLN 144 (199)
T ss_dssp CB-TTBCCHHHHHHHHHHTTS--SSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECC
T ss_pred cc-CCCcCHHHHHHHHHhccc--CCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcC
Confidence 99 999999999999999762 23468999999999865444322 2456788888999998663
No 86
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=98.27 E-value=3.9e-06 Score=82.82 Aligned_cols=156 Identities=12% Similarity=0.068 Sum_probs=112.0
Q ss_pred ceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCCCC-------------------cchHHHHhhcCCCeE
Q 005185 105 QKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD-------------------EEDEYEEKLKKENIV 163 (710)
Q Consensus 105 ~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~-------------------~~~~~~~~l~~~~~~ 163 (710)
|||+|++||.. +++..+|+.+.+.+ +.+ ..++++|+.+... +-..+.+++...+.+
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g--~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~i 77 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKE--HTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHL 77 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CTT--SEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cCC--CeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEE
Confidence 58999999964 47789999998888 443 5688888865432 112345678899999
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHhhc-----C---CCCCcCCceEEEEeccCCc--hHHH--HHHHHHHHHHHHHcCCc
Q 005185 164 FFFLATYGDGEPTDNAARFYKWFTEQK-----E---GGEWLQKLKYGVFGLGNRQ--YEHF--NKIAKVVDEILANQGAK 231 (710)
Q Consensus 164 if~~sTyG~G~~pdna~~F~~~L~~~~-----~---~~~~l~~~~~aVFGlGds~--Y~~f--~~~~k~ld~~L~~lGa~ 231 (710)
||++|.| .+.+|.-.+.|++++.... . ....|+|+++.++..+... |..+ .....-+...|.-+|++
T Consensus 78 V~~~P~y-~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~ 156 (196)
T 3lcm_A 78 IFIFPIW-WSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAIS 156 (196)
T ss_dssp EEEEECB-TTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCC
T ss_pred EEECchh-hccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCc
Confidence 9999999 9999999999999995321 0 1135899999999876665 4211 11113455566667998
Q ss_pred ccccccccCCCCCchhhHHHHHHHHHHHHHhhh
Q 005185 232 RLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (710)
Q Consensus 232 ~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (710)
.+-....+..+...++...+|.+++.....+.+
T Consensus 157 ~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~ 189 (196)
T 3lcm_A 157 PVKLTELTSIEKISDDERQKLLHKVAQITRNIL 189 (196)
T ss_dssp CEEEEEECSTTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred eeeEEEEeCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 776666665565677889999999877776655
No 87
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=98.22 E-value=2.7e-05 Score=77.26 Aligned_cols=150 Identities=12% Similarity=0.077 Sum_probs=104.8
Q ss_pred CCceEEEEEeCCC------chHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCC
Q 005185 103 GKQKVTIFFGTQT------GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPT 176 (710)
Q Consensus 103 ~~~~v~I~YgSqt------Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~p 176 (710)
...+|+|+.||.- +++..+|+.+.+.+.+.+ ..++++|+.+ ..+-..+.+++...+.+||++|.| .+.+|
T Consensus 11 ~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g--~~v~~~dL~~-~~d~~~~~~~l~~AD~iV~~~P~y-~~s~p 86 (204)
T 2amj_A 11 GSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLG--HDVRIVRADS-DYDVKAEVQNFLWADVVIWQMPGW-WMGAP 86 (204)
T ss_dssp -CCEEEEEECCC------CHHHHHHHHHHHHHHHHTT--CEEEEEESSS-CCCHHHHHHHHHHCSEEEEEEECB-TTBCC
T ss_pred CCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcC--CEEEEEeCCc-cccHHHHHHHHHhCCEEEEECCcc-ccCCC
Confidence 4578999999988 899999999999998764 5688999975 223344567889999999999999 99999
Q ss_pred chHHHHHHHHHhhc-------------------CCCCCcCCceEEEEeccCCchHHHH------------HHHHHHHHHH
Q 005185 177 DNAARFYKWFTEQK-------------------EGGEWLQKLKYGVFGLGNRQYEHFN------------KIAKVVDEIL 225 (710)
Q Consensus 177 dna~~F~~~L~~~~-------------------~~~~~l~~~~~aVFGlGds~Y~~f~------------~~~k~ld~~L 225 (710)
.-.+.|++++.... .+...++++++.++.........|. .+...+...|
T Consensus 87 a~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~~~l~~l~~~l 166 (204)
T 2amj_A 87 WTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKAN 166 (204)
T ss_dssp HHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCHHHHHHHHHHHH
Confidence 99999999764211 0123589999999887555433331 2223467778
Q ss_pred HHcCCcccccccccCCC--CCchhhHHHHHHHH
Q 005185 226 ANQGAKRLVPVGLGDDD--QCIEDDFSAWRELV 256 (710)
Q Consensus 226 ~~lGa~~l~~~g~gD~~--~~~e~~f~~W~~~l 256 (710)
.-+|++.+-+....+.+ ...++.++++++.+
T Consensus 167 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (204)
T 2amj_A 167 QFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHL 199 (204)
T ss_dssp HHTTCEECCCEEECSTTTSCCTTTHHHHHHHHH
T ss_pred HHcCCeecceEEEeCCCCcHHHHHHHHHHHHHH
Confidence 88899977554443322 23445555555443
No 88
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=98.21 E-value=8.8e-06 Score=80.07 Aligned_cols=157 Identities=11% Similarity=0.044 Sum_probs=106.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCC----CcchHHHHhhcCCCeEEEEecCCCCCCCCchH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA----DEEDEYEEKLKKENIVFFFLATYGDGEPTDNA 179 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~----~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna 179 (710)
|++|+|++||..++...+++.+.+.+++.+ ..++++||.+.. .+-....+++...+.+||++|.| .+.+|.-.
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g--~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~l 77 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQHT--DRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLL 77 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTCT--TTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHH
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhCC--CeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHH
Confidence 578999999999875578888988887654 457888875432 22233457789999999999999 99999999
Q ss_pred HHHHHHHHhhc----CCCCCcCCceEEEEeccCCc---hH-------HHHHHHHHHHHHHHHcCCcccccccccCCCCC-
Q 005185 180 ARFYKWFTEQK----EGGEWLQKLKYGVFGLGNRQ---YE-------HFNKIAKVVDEILANQGAKRLVPVGLGDDDQC- 244 (710)
Q Consensus 180 ~~F~~~L~~~~----~~~~~l~~~~~aVFGlGds~---Y~-------~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~- 244 (710)
+.|++++.... ..+..|+|+++.++...... |. ......+-+...|.-+|.+.+-+....+....
T Consensus 78 K~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~~~~g~~~~~ 157 (192)
T 3f2v_A 78 KQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPFTFHTIDSNA 157 (192)
T ss_dssp HHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCEEEEC-----
T ss_pred HHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeEEEecccccc
Confidence 99999985321 12246899999988765544 32 12233344667788889997766555443321
Q ss_pred -----chhhHHHHHHHHHHHHHhh
Q 005185 245 -----IEDDFSAWRELVWPELDNL 263 (710)
Q Consensus 245 -----~e~~f~~W~~~l~~~L~~~ 263 (710)
.++++++..++....|.+.
T Consensus 158 ~~~~~~~~~~~~~~~~y~~~l~~~ 181 (192)
T 3f2v_A 158 GYSEAARQEVERSARDYLAWLDAL 181 (192)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544
No 89
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=98.20 E-value=1.3e-05 Score=83.25 Aligned_cols=158 Identities=13% Similarity=-0.017 Sum_probs=107.1
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEecCCCCCC---------------------------------
Q 005185 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVVDIDDYAD--------------------------------- 148 (710)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~--------------------------------- 148 (710)
||+|+|+|||.. |++..+|+.+.+.+++.+ ..++++||.+...
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g--~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKG--WEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGH 79 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCC--CeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhccc
Confidence 679999999987 689999999999998754 5678888876542
Q ss_pred --cc-hHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCc---hHH-
Q 005185 149 --EE-DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQ---YEH- 213 (710)
Q Consensus 149 --~~-~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~---Y~~- 213 (710)
++ ....+++...+.+||++|.| .+.+|.-.+.|++++..... +...|+|+++.++...... |.+
T Consensus 80 ~~dd~~~~~~~l~~AD~IV~~~P~y-~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~ 158 (273)
T 1d4a_A 80 LSPDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQ 158 (273)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTT
T ss_pred CcHHHHHHHHHHHhCCEEEEECchh-hccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhccc
Confidence 01 11234588899999999999 99999999999999854210 1235899998888764443 421
Q ss_pred -HH----HHHHHHH-HHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhhh
Q 005185 214 -FN----KIAKVVD-EILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (710)
Q Consensus 214 -f~----~~~k~ld-~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (710)
.+ .....+. ..|.-+|++.+-+...+......++...+|.++....+.++.
T Consensus 159 g~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~ 215 (273)
T 1d4a_A 159 GIHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIW 215 (273)
T ss_dssp BTTCCHHHHHHHHHTTTTGGGTCEECCCEEETTGGGSCHHHHHHHHHHHHHHHTTGG
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCeeeeEEEEeccccCCHHHHHHHHHHHHHHHHHHH
Confidence 11 1222222 245567888765544443333345567777777777676654
No 90
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=98.19 E-value=1.2e-05 Score=80.10 Aligned_cols=158 Identities=11% Similarity=0.105 Sum_probs=111.5
Q ss_pred CceEEEEEeCCC----chHHHHHHHHHHHHHhhcCCceeEEecCCCCCCc-----------------------------c
Q 005185 104 KQKVTIFFGTQT----GTAEGFAKALADEARARYDKAIFKVVDIDDYADE-----------------------------E 150 (710)
Q Consensus 104 ~~~v~I~YgSqt----Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~-----------------------------~ 150 (710)
|++|+|++||-. +++..+|+.+.+.+++.++...++++||.+++.. -
T Consensus 4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 3p0r_A 4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVA 83 (211)
T ss_dssp CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHH
Confidence 679999999965 8899999999999988754567888998654321 0
Q ss_pred hHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhc------C--CCCCcCCceEEEEeccCCchHH-----HHHH
Q 005185 151 DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------E--GGEWLQKLKYGVFGLGNRQYEH-----FNKI 217 (710)
Q Consensus 151 ~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y~~-----f~~~ 217 (710)
.++.+++...+.+||++|.| .+.+|.-.+.|++++.... . +...|.|+++.++......|.+ +...
T Consensus 84 ~~~~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~ 162 (211)
T 3p0r_A 84 DKYLNQFLEADKVVFGFPLW-NLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMA 162 (211)
T ss_dssp HHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBS
T ss_pred HHHHHHHHhCCEEEEEcChh-cccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHH
Confidence 12335678899999999999 9999999999999985321 0 1225889998888753334522 2334
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhh
Q 005185 218 AKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNL 263 (710)
Q Consensus 218 ~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 263 (710)
...+...|.-+|++.+-.+..+..+.. .+.-++|.++....+.++
T Consensus 163 ~~~l~~~l~~~G~~~v~~i~~~g~~~~-~~~~~~~l~~a~~~~~~~ 207 (211)
T 3p0r_A 163 VKYVASMMGFFGATNMETVVIEGHNQF-PDKAEEIITAGLEEAAKV 207 (211)
T ss_dssp HHHHHHHHHHTTCCSCEEEEEECTTTS-GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEeccccC-chHHHHHHHHHHHHHHHH
Confidence 456777888889997655443333332 446778887766655543
No 91
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=97.49 E-value=2.1e-07 Score=92.33 Aligned_cols=124 Identities=10% Similarity=0.090 Sum_probs=93.6
Q ss_pred CceEEEEEeCCC--chHHHHHHHHHHHHHhhcCCceeEEe-cCCCC---CCc---------chHHHHhhcCCCeEEEEec
Q 005185 104 KQKVTIFFGTQT--GTAEGFAKALADEARARYDKAIFKVV-DIDDY---ADE---------EDEYEEKLKKENIVFFFLA 168 (710)
Q Consensus 104 ~~~v~I~YgSqt--Gtae~~A~~la~~l~~~~~~~~v~v~-dl~~~---~~~---------~~~~~~~l~~~~~~if~~s 168 (710)
+++|+|+|||.. |+++.+|+.+++.+.+ + ..++++ |+.+. +.+ -..+.+++...+.+||++|
T Consensus 6 ~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g--~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP 82 (199)
T 3s2y_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPE-G--IAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
Confidence 478999999986 8999999999998875 3 456778 77652 111 1123456788999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc
Q 005185 169 TYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV 234 (710)
Q Consensus 169 TyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~ 234 (710)
+| +|..|...+.|++|+.... ...+.++++++|+.+...+. ...+...+...|..+|+..+-
T Consensus 83 ~Y-~~s~p~~lK~~iD~l~~~~--~~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~~l~~lg~~~v~ 144 (199)
T 3s2y_A 83 EY-NYSVPGVLKNAIDWLSRVS--PQPLAGKPVALVTASPGMIG-GARAQYHLRQSLVFLDAYVLN 144 (199)
Confidence 99 9999999999999997531 11589999999996433332 334567788888888988664
No 92
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=98.09 E-value=2.4e-05 Score=79.02 Aligned_cols=157 Identities=15% Similarity=0.063 Sum_probs=109.6
Q ss_pred ceEEEEEeCCCc--hHHHHHHHHHHHHHhhcCCceeEEecCCCCCC----------------------------------
Q 005185 105 QKVTIFFGTQTG--TAEGFAKALADEARARYDKAIFKVVDIDDYAD---------------------------------- 148 (710)
Q Consensus 105 ~~v~I~YgSqtG--tae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---------------------------------- 148 (710)
|+|+|++||... ++..+|+.+.+.+++.+ ..++++||.+...
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g--~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 79 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQG--CTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSL 79 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHT--CEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCB
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCC--CEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCC
Confidence 789999999764 49999999999998875 5688999866431
Q ss_pred -cc-hHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcC--------CCCCcCCceEEEEeccCCc---hHH--
Q 005185 149 -EE-DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE--------GGEWLQKLKYGVFGLGNRQ---YEH-- 213 (710)
Q Consensus 149 -~~-~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~---Y~~-- 213 (710)
++ ....+++...+.+||++|.| .+.+|.-.+.|++++..... ....|+|+++.++...... |..
T Consensus 80 ~dd~~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~g 158 (228)
T 3tem_A 80 ASDITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTG 158 (228)
T ss_dssp CHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTTS
T ss_pred cHHHHHHHHHHHhCCEEEEECChh-hcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhcc
Confidence 00 11234578899999999999 99999999999999853210 1136899999888654433 421
Q ss_pred HHHHHHHHHH-----HHHHcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhhh
Q 005185 214 FNKIAKVVDE-----ILANQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (710)
Q Consensus 214 f~~~~k~ld~-----~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (710)
++...+.+-. .|.-+|.+.+-+....+.....++...+|.++....|.++.
T Consensus 159 ~~~~~~~~l~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 214 (228)
T 3tem_A 159 VNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIW 214 (228)
T ss_dssp TTCCHHHHHHHHHCCCCCTTTCEECCCEEECCTTTSCHHHHHHHHHHHHHHHHTGG
T ss_pred ccCCHHHHHHHHHHHHHHhCCceEcCeEEEcCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 2221122111 22335777666665666666678889999999888888665
No 93
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=97.97 E-value=0.00016 Score=70.92 Aligned_cols=124 Identities=14% Similarity=0.194 Sum_probs=89.0
Q ss_pred CceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEecCCCCCC---cc--------hHHHHhhcCCCeEEEEecCC
Q 005185 104 KQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYAD---EE--------DEYEEKLKKENIVFFFLATY 170 (710)
Q Consensus 104 ~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~---~~--------~~~~~~l~~~~~~if~~sTy 170 (710)
+|+|.|+.||. ...+..+|+.+++.+.+ ...++++|+.+... +. ..+.+.+...+.+||++|.|
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~~---~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY 78 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAEG---RLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY 78 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHTT---TEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh
Confidence 46899999994 45678888888776643 25678888766422 11 11235678899999999999
Q ss_pred CCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCccc
Q 005185 171 GDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRL 233 (710)
Q Consensus 171 G~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l 233 (710)
+|..|.-.+.|++|+.... ....+.+|.++++|.+-..+... .+...+...|..+|+..+
T Consensus 79 -n~s~pg~LKn~iDwlsr~~-~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~ 138 (190)
T 3u7r_A 79 -NRSYPGMIKNAIDWATRPY-GQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMM 138 (190)
T ss_dssp -TTBCCHHHHHHHHHHHCST-TCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEEC
T ss_pred -cccCCHHHHHHHHHhcccc-cCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEc
Confidence 9999999999999996421 23468999999998644343222 234567778888998755
No 94
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=97.95 E-value=0.00011 Score=74.06 Aligned_cols=161 Identities=11% Similarity=0.056 Sum_probs=113.7
Q ss_pred CCceEEEEEeCC-----CchHHHHHHHHHHHHHhhcCCc-eeEEecCCCCCCc--c------------------------
Q 005185 103 GKQKVTIFFGTQ-----TGTAEGFAKALADEARARYDKA-IFKVVDIDDYADE--E------------------------ 150 (710)
Q Consensus 103 ~~~~v~I~YgSq-----tGtae~~A~~la~~l~~~~~~~-~v~v~dl~~~~~~--~------------------------ 150 (710)
.|++|+|+.||- .+++..+++.+.+.+++.++.. .++++||.+++.. +
T Consensus 3 ~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (223)
T 3u7i_A 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVT 82 (223)
T ss_dssp CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHH
Confidence 378999999995 5899999999999999876556 7889998665321 0
Q ss_pred ---hHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhc------CCC--CCc-CCceEEEEeccCCch------H
Q 005185 151 ---DEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK------EGG--EWL-QKLKYGVFGLGNRQY------E 212 (710)
Q Consensus 151 ---~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~------~~~--~~l-~~~~~aVFGlGds~Y------~ 212 (710)
.++.+++...+.+||++|.| .+.+|.-.+.|++|+.... ..+ ..+ .+++..|+......| .
T Consensus 83 d~~~~l~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~ 161 (223)
T 3u7i_A 83 ERMSEILQQFKSANTYVIVLPLH-NFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYT 161 (223)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHH
T ss_pred HHHHHHHHHHHhCCEEEEEcChh-hccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccc
Confidence 12345678889999999999 9999999999999986421 011 235 789988886633334 2
Q ss_pred HHHHHHHHHHHHHHHcCCcccccccccCC-CCCchhhHHHHHHHHHHHHHhhh
Q 005185 213 HFNKIAKVVDEILANQGAKRLVPVGLGDD-DQCIEDDFSAWRELVWPELDNLL 264 (710)
Q Consensus 213 ~f~~~~k~ld~~L~~lGa~~l~~~g~gD~-~~~~e~~f~~W~~~l~~~L~~~~ 264 (710)
.+......+...|.-+|++.+-.+..... ....++.++++.+++.....+..
T Consensus 162 ~~~~~~~~l~~~l~~~G~~~~~~i~~~g~~~~~~~~~~~~a~~~~~~~~~~f~ 214 (223)
T 3u7i_A 162 DVEYSHKYLKAMFNFLGIEDYQIVRAQGTAVLDPTEVLQNAYKEVEEAASRLA 214 (223)
T ss_dssp HTCHHHHHHHHHHHHHTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCceeEEEEEcCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 23345566778888889987654333222 22356778888887766555543
No 95
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=97.94 E-value=9.2e-05 Score=72.76 Aligned_cols=155 Identities=13% Similarity=0.093 Sum_probs=102.6
Q ss_pred CCceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeE-EecCCCCCCc-------------chHHHHhhcCCCeEEEE
Q 005185 103 GKQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFK-VVDIDDYADE-------------EDEYEEKLKKENIVFFF 166 (710)
Q Consensus 103 ~~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~-v~dl~~~~~~-------------~~~~~~~l~~~~~~if~ 166 (710)
.+++|+++.||- .+++..+|+.+.+.+ .. +..++ ++|+.+...- -.++.+++...+.+||+
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~-~~--g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~ 79 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIA-PA--SMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIV 79 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTS-CT--TEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEE
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHc-cC--CCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEE
Confidence 357999999995 578888888775533 22 24567 7788754321 11245678889999999
Q ss_pred ecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccc-c-cccc-----
Q 005185 167 LATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLV-P-VGLG----- 239 (710)
Q Consensus 167 ~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~-~-~g~g----- 239 (710)
+|+| +|.+|...+.|++|+... ....+.|+++++++..-..+... .+...+...|..+|+..+- | ...+
T Consensus 80 sP~y-~~~~~~~lK~~iD~~~~~--~~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~~~~~~~~~~~~~~ 155 (193)
T 3svl_A 80 TPEY-NYSVPGGLKNAIDWLSRL--PDQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVMNKPEFMGGVIQNK 155 (193)
T ss_dssp ECCB-TTBCCHHHHHHHHHHHTS--TTCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEECCSSCEEETTGGGG
T ss_pred eccc-CCCCCHHHHHHHHHHhhc--CccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEcCCCeEeecchhhh
Confidence 9999 999999999999999852 23368999999998632223222 3557788889999998652 1 1111
Q ss_pred -CCC-C-CchhhHHHHHHHHHHHHHhhh
Q 005185 240 -DDD-Q-CIEDDFSAWRELVWPELDNLL 264 (710)
Q Consensus 240 -D~~-~-~~e~~f~~W~~~l~~~L~~~~ 264 (710)
|++ . -.+++..+..+.+...+....
T Consensus 156 f~~~~g~l~d~~~~~~l~~~~~~~~~~~ 183 (193)
T 3svl_A 156 VDPQTGEVIDQGTLDHLTGQLTAFGEFI 183 (193)
T ss_dssp EETTTTEECCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 221 1 134556666666666665544
No 96
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=97.93 E-value=7.6e-05 Score=72.38 Aligned_cols=151 Identities=8% Similarity=-0.004 Sum_probs=104.8
Q ss_pred ceEEEEEeCCC---chHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHH
Q 005185 105 QKVTIFFGTQT---GTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (710)
Q Consensus 105 ~~v~I~YgSqt---Gtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (710)
|||+|++||-. +.+..+++..++ .. ..++++||.+ ..|-....+++...+.+||++|.| .+.+|.-.+.
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~----~~--~~v~v~dL~~-~~D~~~~~~~l~~aD~iV~~~P~y-~~~~pa~lK~ 72 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIE----NF--SNVTWHPLVA-DFNVEQEQSLLLQNDRIILEFPLY-WYSAPALLKQ 72 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHT----TC--TTEEEEECCT-TCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHHHH
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHh----cC--CCEEEEECCC-cccHHHHHHHHHhCCEEEEECChh-hccCCHHHHH
Confidence 47999999975 444444443333 22 3488999986 444445567899999999999999 9999999999
Q ss_pred HHHHHHhhc---CCCCCcCCceEEEEeccCCchHH----------HHHHHHHHHHHHHHcCCcccccccccCCCCCchhh
Q 005185 182 FYKWFTEQK---EGGEWLQKLKYGVFGLGNRQYEH----------FNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDD 248 (710)
Q Consensus 182 F~~~L~~~~---~~~~~l~~~~~aVFGlGds~Y~~----------f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~ 248 (710)
|++++.... ..+..|+|+++.++.......+. .....+-+...+.-+|.+-+-+......+...+++
T Consensus 73 ~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~~~~~~ 152 (177)
T 3ha2_A 73 WMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLYLEPDA 152 (177)
T ss_dssp HHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGGSCHHH
T ss_pred HHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCCCCHHH
Confidence 999874320 11236899999988665444222 22344445666777899987666665555566888
Q ss_pred HHHHHHHHHHHHHhh
Q 005185 249 FSAWRELVWPELDNL 263 (710)
Q Consensus 249 f~~W~~~l~~~L~~~ 263 (710)
.++|.++....|.+.
T Consensus 153 ~~~~l~~~~~~l~~~ 167 (177)
T 3ha2_A 153 QQRLLVAYQQYATNV 167 (177)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHccc
Confidence 999999887777643
No 97
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=97.59 E-value=0.00052 Score=75.37 Aligned_cols=157 Identities=11% Similarity=0.069 Sum_probs=106.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCC----CCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDID----DYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNA 179 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~----~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna 179 (710)
+++|+|++||..++...+.+.+++.+... ..++++||. ++..+-....+.+...+.+||++|.| .+..|.-.
T Consensus 236 ~mkiLvi~gspr~~ss~~n~~l~~~~~~~---~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~~~P~y-w~~~Pa~l 311 (413)
T 3l9w_A 236 SGMILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLL 311 (413)
T ss_dssp -CCEEEEECCSCGGGCSHHHHHHHHHHTS---SSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHH
T ss_pred CCCEEEEEECCCcchHHHHHHHHHHHhcC---CCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEEECchh-hccCCHHH
Confidence 47899999998887666888888887653 347788773 22333334567889999999999999 99999999
Q ss_pred HHHHHHHHhhc----CCCCCcCCceEEEEeccCCchHHH--------HHHHHHHHHHHHHcCCcccccccccCCCCCchh
Q 005185 180 ARFYKWFTEQK----EGGEWLQKLKYGVFGLGNRQYEHF--------NKIAKVVDEILANQGAKRLVPVGLGDDDQCIED 247 (710)
Q Consensus 180 ~~F~~~L~~~~----~~~~~l~~~~~aVFGlGds~Y~~f--------~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~ 247 (710)
+.|++++.... ..+..|+|+++.++.......+.| .....-+...|.-+|++-+-+........-.++
T Consensus 312 K~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g~~~~~d~ 391 (413)
T 3l9w_A 312 KLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDE 391 (413)
T ss_dssp HHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECCSTTCCHH
T ss_pred HHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcCCCCCCHH
Confidence 99999985321 123358999988775533322222 223355666777889987655544433333456
Q ss_pred hHHHHHHHHHHHHHhhh
Q 005185 248 DFSAWRELVWPELDNLL 264 (710)
Q Consensus 248 ~f~~W~~~l~~~L~~~~ 264 (710)
+..++.++....|..+.
T Consensus 392 ~~~~~~~~~~~~L~~~~ 408 (413)
T 3l9w_A 392 TLEGQARHYKQRLLEWQ 408 (413)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666554
No 98
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=97.22 E-value=0.0034 Score=65.16 Aligned_cols=159 Identities=14% Similarity=0.067 Sum_probs=106.4
Q ss_pred CCceEEEEEeCC--CchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCc-------------------------------
Q 005185 103 GKQKVTIFFGTQ--TGTAEGFAKALADEARARYDKAIFKVVDIDDYADE------------------------------- 149 (710)
Q Consensus 103 ~~~~v~I~YgSq--tGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~------------------------------- 149 (710)
..|||+|+||+- .+.+..+++.+.+.+++.+ ..|+++||-+...+
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G--~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAG--HEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGT 98 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTT--CEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTC
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCC--CeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCC
Confidence 457899999984 4678889999999998876 56889998543221
Q ss_pred ----chHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcC----------------CCCCcCCceEEEEeccCC
Q 005185 150 ----EDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKE----------------GGEWLQKLKYGVFGLGNR 209 (710)
Q Consensus 150 ----~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~----------------~~~~l~~~~~aVFGlGds 209 (710)
-....+.+...+.+||+.|.| .+.+|.-.+.|++....... +...|+|+++.++-.-+.
T Consensus 99 ~~~dv~~~~~~l~~aD~iv~~~P~~-w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~ 177 (280)
T 4gi5_A 99 QSADIVAEQEKLLWADTVIFQFPLW-WFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGG 177 (280)
T ss_dssp SCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSS
T ss_pred CcHHHHHHHHHHHhCCEEEEEeccc-cccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCC
Confidence 011234577889999999999 99999999999998753110 123478898776644333
Q ss_pred chHHHHHH--HHHHHHHHH--------HcCCcccccccccCCCCCchhhHHHHHHHHHHHHHhhh
Q 005185 210 QYEHFNKI--AKVVDEILA--------NQGAKRLVPVGLGDDDQCIEDDFSAWRELVWPELDNLL 264 (710)
Q Consensus 210 ~Y~~f~~~--~k~ld~~L~--------~lGa~~l~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~~ 264 (710)
..+.|... ...+++.|. =.|.+.+-|....+.+...++++.+|.+++-+.|.++.
T Consensus 178 ~~~~y~~~g~~~~~~~~l~~~~~~~~~~~Gm~~l~~f~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 242 (280)
T 4gi5_A 178 WAEHYSPRGINGPIDDILFPIQHGMLFYPGFEVLPPLVFYRTDKTDAGQFADQCAALAERLDTLW 242 (280)
T ss_dssp CGGGGSTTBTTCCHHHHTHHHHCCCCCTTTCEECCCEEECSGGGCCHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHccccccCCCHHHHHHHHHHHHHHcCCCeECCcEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 32222111 112333322 23777666666666666678889999999888887665
No 99
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=83.26 E-value=2 Score=44.52 Aligned_cols=52 Identities=13% Similarity=0.360 Sum_probs=44.2
Q ss_pred cccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCC
Q 005185 309 VYDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 361 (710)
Q Consensus 309 ~~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N 361 (710)
.|+...|+.++|+.+++++..+....++||+|+.+ ..+.|+||.|+.|.++.
T Consensus 27 ~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~-~~~~~~pGQ~v~l~~~~ 78 (310)
T 3vo2_A 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTE-GEIPYREGQSIGIIADG 78 (310)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECT-TCCCCCTTCEEEEECSS
T ss_pred eecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCC-CCCcccCCCEEEEECCC
Confidence 46778899999999999987666778999999965 46899999999998764
No 100
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=78.29 E-value=5.3 Score=35.01 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=36.1
Q ss_pred cCCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCC
Q 005185 102 DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYA 147 (710)
Q Consensus 102 ~~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~ 147 (710)
..+++|+++.||--||+..++.+|.+.+.+.+....+...++.++.
T Consensus 19 ~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~ 64 (113)
T 1tvm_A 19 GSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE 64 (113)
T ss_dssp CSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred ccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHh
Confidence 3567899999999999999999999999887643334556666553
No 101
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=62.34 E-value=12 Score=33.72 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=58.9
Q ss_pred EEEeCCCchHHHHHHHHHH-HHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCe-EEEEecCCCCCCCCchHHHHHHHH
Q 005185 109 IFFGTQTGTAEGFAKALAD-EARARYDKAIFKVVDIDDYADEEDEYEEKLKKENI-VFFFLATYGDGEPTDNAARFYKWF 186 (710)
Q Consensus 109 I~YgSqtGtae~~A~~la~-~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~-~if~~sTyG~G~~pdna~~F~~~L 186 (710)
|+-++.-|..-.+-..+.. .++..| ++++++-..-+ .+++.+...+.+. +|.+|++. +.-.+.+.++.+.|
T Consensus 6 vvla~~~~d~HdiG~~~v~~~l~~~G----~~Vi~lG~~~p-~e~~v~~a~~~~~d~v~lS~~~--~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 6 IVLGVIGSDCHAVGNKILDHAFTNAG----FNVVNIGVLSP-QELFIKAAIETKADAILVSSLY--GQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEETTCCCCHHHHHHHHHHHHTT----CEEEEEEEEEC-HHHHHHHHHHHTCSEEEEEECS--STHHHHHTTHHHHH
T ss_pred EEEEeCCCchhHHHHHHHHHHHHHCC----CEEEECCCCCC-HHHHHHHHHhcCCCEEEEEecC--cCcHHHHHHHHHHH
Confidence 4445655544444444444 444444 57777754322 2334444444443 44444444 44445677777777
Q ss_pred HhhcCCCCCcCCceEEEEecc---CCchHHHHHHHHHHHHHHHHcCCccccccc
Q 005185 187 TEQKEGGEWLQKLKYGVFGLG---NRQYEHFNKIAKVVDEILANQGAKRLVPVG 237 (710)
Q Consensus 187 ~~~~~~~~~l~~~~~aVFGlG---ds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g 237 (710)
++.. +.+.++-|=|-. ...| . ...+.++++|+..+++.|
T Consensus 79 ~~~g-----~~~i~v~vGG~~~~~~~~~---~----~~~~~~~~~G~d~~~~~g 120 (137)
T 1ccw_A 79 DEAG-----LEGILLYVGGNIVVGKQHW---P----DVEKRFKDMGYDRVYAPG 120 (137)
T ss_dssp HHTT-----CTTCEEEEEESCSSSSCCH---H----HHHHHHHHTTCSEECCTT
T ss_pred HhcC-----CCCCEEEEECCCcCchHhh---h----hhHHHHHHCCCCEEECCC
Confidence 7642 335666555532 2223 1 234678899999988655
No 102
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=61.89 E-value=14 Score=31.91 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=41.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCC
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATY 170 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTy 170 (710)
+++|+++.|+--||+ -+++++.+.+++++....+.-.++.+.. +.+.+++ +|+.+|..
T Consensus 3 mkkIll~Cg~G~sTS-~l~~k~~~~~~~~gi~~~i~a~~~~~~~-------~~~~~~D-vil~~pqv 60 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTS-LLVSKMRAQAEKYEVPVIIEAFPETLAG-------EKGQNAD-VVLLGPQI 60 (106)
T ss_dssp CEEEEEECSSSTTTH-HHHHHHHHHHHHSCCSEEEEEECSSSTT-------HHHHHCS-EEEECTTS
T ss_pred CcEEEEECCCchhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHH-------hhccCCC-EEEEccch
Confidence 578999999999999 8999999999988754444555665544 2345566 45555655
No 103
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=56.32 E-value=12 Score=32.29 Aligned_cols=56 Identities=9% Similarity=0.207 Sum_probs=37.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEec
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLA 168 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~s 168 (710)
.++|+++.+|--||+ -++++|.+.+.+.+....+...++.++. ..+.+.++ |+.++
T Consensus 4 ~mkIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~~-------~~~~~~D~-Ii~t~ 59 (109)
T 2l2q_A 4 SMNILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRLS-------EVVDRFDV-VLLAP 59 (109)
T ss_dssp CEEEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTHH-------HHTTTCSE-EEECS
T ss_pred ceEEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHH-------hhcCCCCE-EEECC
Confidence 357999999999999 9999999999887643334444444432 23456674 44444
No 104
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=54.97 E-value=21 Score=36.48 Aligned_cols=51 Identities=22% Similarity=0.413 Sum_probs=41.3
Q ss_pred ccCCCCeeEEEEeeecccCCCCCCcEEEEEEEecCCCCccCCCCeeEEccCC
Q 005185 310 YDAQHPCRSNVAVRKELHTPSSDRSCTHLEFDIAGTGLTYETGDHVGVYCEN 361 (710)
Q Consensus 310 ~~~~~p~~a~v~~~~~L~~~~~~r~~~hle~di~~~~~~Y~~GD~l~V~p~N 361 (710)
++...++.++|+..+.++.++...+++++.|..+. .+.|+||.++.|..+.
T Consensus 23 ~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~-~~~~~pGQ~v~l~~~~ 73 (311)
T 3lo8_A 23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPG 73 (311)
T ss_dssp BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSS
T ss_pred cCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCC-CCcccCCCEEEEeCCC
Confidence 45567888999999998855555679999999764 5899999999998754
No 105
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=47.63 E-value=24 Score=25.62 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhhhcCC
Q 005185 64 VLIGCVVVFILRRSSS 79 (710)
Q Consensus 64 ~~~~~~~~~~~~~~~~ 79 (710)
+++....+++|||+..
T Consensus 24 ~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhhhhhh
Confidence 3333344555555543
No 106
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=45.12 E-value=15 Score=31.80 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=27.1
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhc
Q 005185 103 GKQKVTIFFGTQTGTAEGFAKALADEARARY 133 (710)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~ 133 (710)
.+++|+++.++--||+.-++.+|.+.+.+.+
T Consensus 17 ~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~g 47 (110)
T 3czc_A 17 SMVKVLTACGNGMGSSMVIKMKVENALRQLG 47 (110)
T ss_dssp -CEEEEEECCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999998765
No 107
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=44.91 E-value=24 Score=25.63 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhhhcCC
Q 005185 62 IAVLIGCVVVFILRRSSS 79 (710)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~ 79 (710)
++++++..+++++||++.
T Consensus 23 l~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhheehhhh
Confidence 444455444455555543
No 108
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=43.38 E-value=29 Score=25.14 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=6.1
Q ss_pred HHHHHHHhhhhcC
Q 005185 66 IGCVVVFILRRSS 78 (710)
Q Consensus 66 ~~~~~~~~~~~~~ 78 (710)
+...+++++||+.
T Consensus 27 i~~~~~~~~RRr~ 39 (44)
T 2ks1_B 27 VALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhH
Confidence 3334445555554
No 109
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=40.49 E-value=44 Score=29.63 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=34.4
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcC-CceeEEecCCCC
Q 005185 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYD-KAIFKVVDIDDY 146 (710)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~-~~~v~v~dl~~~ 146 (710)
.+++|+++.++--||+..++.+|.+.+.+.+. ...+...++.++
T Consensus 12 ~~kkIlvVC~sGmgTS~ml~~klkk~~~e~gi~~~~V~~~~i~e~ 56 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNL 56 (125)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHHHHHHHHTTCTTSEEEECCTTCC
T ss_pred cccEEEEECCCcHHHHHHHHHHHHHHHHHCCCceEEEEEeeHHHC
Confidence 46789999999999999999999999987663 334455555554
No 110
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=35.09 E-value=54 Score=33.00 Aligned_cols=75 Identities=16% Similarity=0.026 Sum_probs=41.6
Q ss_pred CCceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHH
Q 005185 103 GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARF 182 (710)
Q Consensus 103 ~~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F 182 (710)
.|++|+|+=|++. +..|..|.+.|++.+ ..|++++.++...+ .++|.+++++|+.- +..+.-.++..+.+
T Consensus 3 ~m~~vLiV~g~~~---~~~a~~l~~aL~~~g--~~V~~i~~~~~~~~----~~~L~~yDvIIl~d-~~~~~l~~~~~~~L 72 (259)
T 3rht_A 3 AMTRVLYCGDTSL---ETAAGYLAGLMTSWQ--WEFDYIPSHVGLDV----GELLAKQDLVILSD-YPAERMTAQAIDQL 72 (259)
T ss_dssp ---CEEEEESSCT---TTTHHHHHHHHHHTT--CCCEEECTTSCBCS----SHHHHTCSEEEEES-CCGGGBCHHHHHHH
T ss_pred CCceEEEECCCCc---hhHHHHHHHHHHhCC--ceEEEecccccccC----hhHHhcCCEEEEcC-CccccCCHHHHHHH
Confidence 3678888833322 334555666666554 56788877665322 25688999887762 22122233445566
Q ss_pred HHHHH
Q 005185 183 YKWFT 187 (710)
Q Consensus 183 ~~~L~ 187 (710)
.+|..
T Consensus 73 ~~yV~ 77 (259)
T 3rht_A 73 VTMVK 77 (259)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 111
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=33.68 E-value=32 Score=36.05 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=21.2
Q ss_pred CCeEEEecCCc--chHHHHHHHHHHHh
Q 005185 560 VPIIMIGPGTG--LAPFRGFLQERFAL 584 (710)
Q Consensus 560 ~piImIa~GTG--IAPfrs~l~~~~~~ 584 (710)
+.|++.||||| |-|..++.++..++
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQAR 29 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhC
Confidence 45889999997 89999999998764
No 112
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=33.51 E-value=32 Score=32.29 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=41.4
Q ss_pred CcCCceEEEEeccCCchHHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHH
Q 005185 195 WLQKLKYGVFGLGNRQYEHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAW 252 (710)
Q Consensus 195 ~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W 252 (710)
..+..+++|+-.||....-++..+..+.++|.++|++...-....|+...+.+.+..|
T Consensus 7 ~~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a 64 (172)
T 1mkz_A 7 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAW 64 (172)
T ss_dssp SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHH
Confidence 3567899999999997666777788899999999997554334445433444445444
No 113
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=33.44 E-value=2.1e+02 Score=28.88 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=44.1
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCC-CchHHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEP-TDNAARF 182 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~-pdna~~F 182 (710)
..+|+|+-|...=.-+..+..|++.|.+.+ ...|.+.+-.....+...+.+.|.+++++|+ .+.| +.. ++..+.|
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g-~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~--~~~~-~~l~~~~~~~l 79 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSG-RFDVDFVISPEQGKDMSGFVLDFSPYQLVVL--DYNG-DSWPEETNRRF 79 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTT-SEEEEEEECCCTTSCCTTCCCCCTTCSEEEE--CCCS-SCCCHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcC-CEEEEEEeCCccccchhHHhhhhhcCCEEEE--eCCC-CcCCHHHHHHH
Confidence 457888855443336777788888887654 2455555321000000111135888998874 4443 333 3445667
Q ss_pred HHHHHh
Q 005185 183 YKWFTE 188 (710)
Q Consensus 183 ~~~L~~ 188 (710)
.+++.+
T Consensus 80 ~~yV~~ 85 (281)
T 4e5v_A 80 LEYVQN 85 (281)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 777764
No 114
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=32.74 E-value=1e+02 Score=26.55 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=47.4
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEE--ecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHH
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKV--VDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAAR 181 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v--~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~ 181 (710)
+++|+++.+. .++|--+++++.+.+++++ ..+++ ....++. +.+.++++ |++.|-. +.
T Consensus 6 ~mkIlL~C~a-GmSTsllv~km~~~a~~~g--i~v~i~a~~~~~~~-------~~~~~~Dv-vLLgPQV---------~y 65 (108)
T 3nbm_A 6 ELKVLVLCAG-SGTSAQLANAINEGANLTE--VRVIANSGAYGAHY-------DIMGVYDL-IILAPQV---------RS 65 (108)
T ss_dssp CEEEEEEESS-SSHHHHHHHHHHHHHHHHT--CSEEEEEEETTSCT-------TTGGGCSE-EEECGGG---------GG
T ss_pred CceEEEECCC-CCCHHHHHHHHHHHHHHCC--CceEEEEcchHHHH-------hhccCCCE-EEEChHH---------HH
Confidence 5677766665 5888889999999999886 44555 3344432 23556775 5555544 12
Q ss_pred HHHHHHhhcCCCCCcCCceEEEEe
Q 005185 182 FYKWFTEQKEGGEWLQKLKYGVFG 205 (710)
Q Consensus 182 F~~~L~~~~~~~~~l~~~~~aVFG 205 (710)
.++.+++.. .-.|+++.|.-
T Consensus 66 ~~~~ik~~~----~~~~ipV~vI~ 85 (108)
T 3nbm_A 66 YYREMKVDA----ERLGIQIVATR 85 (108)
T ss_dssp GHHHHHHHH----TTTTCEEEECC
T ss_pred HHHHHHHHh----hhcCCcEEEeC
Confidence 333444321 12378888885
No 115
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=28.03 E-value=50 Score=28.84 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=35.9
Q ss_pred CceEEEEEeCCCchHHHHHHHHHHHHHhhcCCceeEEecCCCCCCcchH-HHHhhcCCCeEEEE
Q 005185 104 KQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVDIDDYADEEDE-YEEKLKKENIVFFF 166 (710)
Q Consensus 104 ~~~v~I~YgSqtGtae~~A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~-~~~~l~~~~~~if~ 166 (710)
..-+.|.|||+.+++.+.++.|. ++| ..+.++++....+=+.+ +.+.+.+.+.++++
T Consensus 14 ~dv~iv~~Gs~~~~a~eA~~~L~----~~G--i~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvv 71 (118)
T 3ju3_A 14 ADITFVTWGSQKGPILDVIEDLK----EEG--ISANLLYLKMFSPFPTEFVKNVLSSANLVIDV 71 (118)
T ss_dssp CSEEEEEEGGGHHHHHHHHHHHH----HTT--CCEEEEEECSSCSCCHHHHHHHHTTCSCCCCC
T ss_pred CCEEEEEECccHHHHHHHHHHHH----HCC--CceEEEEECeEecCCHHHHHHHHcCCCEEEEE
Confidence 34567779999999999887664 344 44678887766543333 34445555555433
No 116
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=26.18 E-value=28 Score=21.70 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=9.6
Q ss_pred CceEEEEeccCC
Q 005185 198 KLKYGVFGLGNR 209 (710)
Q Consensus 198 ~~~~aVFGlGds 209 (710)
.+-|-|||+||-
T Consensus 3 slFyEIFGtG~E 14 (26)
T 2xpn_B 3 HMFFEIFGTGEE 14 (26)
T ss_pred cEEEEEecCCce
Confidence 467899999974
No 117
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=26.10 E-value=1.8e+02 Score=28.85 Aligned_cols=73 Identities=12% Similarity=0.061 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhcCCceeEEecCCCCCCcchHHHHhhcCCCeEEEEecCCCCCCCCchHHHHHHHHHhhcCCCCCcCCceE
Q 005185 122 AKALADEARARYDKAIFKVVDIDDYADEEDEYEEKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWLQKLKY 201 (710)
Q Consensus 122 A~~la~~l~~~~~~~~v~v~dl~~~~~~~~~~~~~l~~~~~~if~~sTyG~G~~pdna~~F~~~L~~~~~~~~~l~~~~~ 201 (710)
+..|++.|.+.+ ..|++..+++..... -.+.|.+++++|+...+.|+--.++..+.|.+|+.+ |.-+
T Consensus 34 ~~~i~~~L~~~g--f~V~~~t~dd~~~~~--~~~~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~~---------GgG~ 100 (252)
T 1t0b_A 34 HTVIASYLAEAG--FDAATAVLDEPEHGL--TDEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLE---------GMGL 100 (252)
T ss_dssp HHHHHHHHHHTT--CEEEEEESSSGGGGC--CHHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHT---------TCEE
T ss_pred HHHHHHHHhhCC--cEEEEEeccCccccC--CHhHHhcCCEEEEecCCCCCcCCHHHHHHHHHHHHc---------CCCE
Confidence 445566666544 556766654432100 024588999999875555333334456677777764 5555
Q ss_pred EEEecc
Q 005185 202 GVFGLG 207 (710)
Q Consensus 202 aVFGlG 207 (710)
.++-.|
T Consensus 101 vgiH~a 106 (252)
T 1t0b_A 101 IVLHSG 106 (252)
T ss_dssp EEEGGG
T ss_pred EEEccc
Confidence 555544
No 118
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=24.37 E-value=28 Score=32.48 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=38.5
Q ss_pred cCCceEEEEeccCCch--HHHHHHHHHHHHHHHHcCCcccccccccCCCCCchhhHHHHH
Q 005185 196 LQKLKYGVFGLGNRQY--EHFNKIAKVVDEILANQGAKRLVPVGLGDDDQCIEDDFSAWR 253 (710)
Q Consensus 196 l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~~~~~e~~f~~W~ 253 (710)
.+..+++|+-.||.-+ .-++..+..+..+|++.|++...-....|+ ..+.+.+.+|.
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~ 63 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAI 63 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHH
Confidence 4567999999999876 456777788999999999986544344555 55555565554
No 119
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=21.02 E-value=19 Score=34.10 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=32.9
Q ss_pred CcCCceEEEEeccCCch-------HHHHHHHHHHHHHHHHcCCcccccccccCC
Q 005185 195 WLQKLKYGVFGLGNRQY-------EHFNKIAKVVDEILANQGAKRLVPVGLGDD 241 (710)
Q Consensus 195 ~l~~~~~aVFGlGds~Y-------~~f~~~~k~ld~~L~~lGa~~l~~~g~gD~ 241 (710)
..+..+++|+-.||.-+ .-++..+..+.++|+++|++...-....|+
T Consensus 12 ~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd 65 (178)
T 2pjk_A 12 APKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD 65 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC
T ss_pred CCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC
Confidence 46778999999999655 234566778899999999985543333343
Done!