Query 005186
Match_columns 710
No_of_seqs 291 out of 2564
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 19:28:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1051 Chaperone HSP104 and r 100.0 5.1E-54 1.1E-58 500.1 27.4 480 3-690 366-854 (898)
2 COG0542 clpA ATP-binding subun 100.0 2.2E-52 4.8E-57 481.3 26.3 294 290-690 477-776 (786)
3 CHL00095 clpC Clp protease ATP 100.0 9.1E-41 2E-45 398.6 32.0 304 290-691 495-804 (821)
4 TIGR03345 VI_ClpV1 type VI sec 100.0 1.3E-39 2.8E-44 388.1 29.4 291 290-687 552-849 (852)
5 PRK11034 clpA ATP-dependent Cl 100.0 5.3E-39 1.1E-43 377.0 29.0 291 290-691 444-738 (758)
6 TIGR02639 ClpA ATP-dependent C 100.0 1.2E-38 2.5E-43 376.5 30.2 288 291-686 441-729 (731)
7 TIGR03346 chaperone_ClpB ATP-d 100.0 2.2E-37 4.7E-42 370.7 31.4 289 290-688 551-845 (852)
8 PRK10865 protein disaggregatio 100.0 4.8E-36 1E-40 358.3 27.9 295 290-689 554-849 (857)
9 TIGR00382 clpX endopeptidase C 100.0 6.1E-32 1.3E-36 297.9 25.4 289 292-675 65-391 (413)
10 PRK05342 clpX ATP-dependent pr 100.0 3.7E-30 8.1E-35 284.8 26.0 291 292-675 59-385 (412)
11 COG1219 ClpX ATP-dependent pro 100.0 5.4E-28 1.2E-32 251.5 17.4 293 291-676 48-375 (408)
12 KOG0745 Putative ATP-dependent 99.9 3.8E-26 8.3E-31 245.2 19.6 313 280-673 124-513 (564)
13 PF07724 AAA_2: AAA domain (Cd 99.9 2.6E-24 5.6E-29 212.1 8.4 117 336-470 1-133 (171)
14 PRK05201 hslU ATP-dependent pr 99.9 1E-21 2.2E-26 215.1 20.3 85 590-674 318-412 (443)
15 TIGR00390 hslU ATP-dependent p 99.9 5.8E-21 1.3E-25 209.1 20.2 85 590-674 316-410 (441)
16 COG3604 FhlA Transcriptional r 99.9 1.5E-21 3.3E-26 214.1 14.9 214 305-666 224-454 (550)
17 TIGR00763 lon ATP-dependent pr 99.9 2.5E-20 5.5E-25 222.1 23.7 243 291-677 307-563 (775)
18 COG3829 RocR Transcriptional r 99.9 3E-21 6.6E-26 214.3 13.2 222 303-665 244-476 (560)
19 COG2204 AtoC Response regulato 99.8 5.9E-21 1.3E-25 212.0 14.2 224 303-665 140-371 (464)
20 PRK10787 DNA-binding ATP-depen 99.8 8.3E-19 1.8E-23 208.3 24.8 244 291-678 309-565 (784)
21 COG0466 Lon ATP-dependent Lon 99.8 2.2E-18 4.7E-23 195.8 20.9 244 291-676 310-565 (782)
22 TIGR02974 phageshock_pspF psp 99.8 3E-18 6.4E-23 185.6 15.5 223 306-666 1-231 (329)
23 KOG2004 Mitochondrial ATP-depe 99.8 2.2E-17 4.8E-22 186.7 20.2 245 291-677 398-654 (906)
24 TIGR01817 nifA Nif-specific re 99.7 3.2E-17 6.8E-22 188.4 14.8 224 303-666 195-426 (534)
25 PRK11608 pspF phage shock prot 99.7 7.6E-17 1.6E-21 174.5 15.9 225 303-666 5-238 (326)
26 CHL00181 cbbX CbbX; Provisiona 99.7 4.7E-16 1E-20 165.5 21.5 230 288-676 7-262 (287)
27 PRK05022 anaerobic nitric oxid 99.7 1.1E-16 2.3E-21 183.0 16.1 224 304-666 187-418 (509)
28 TIGR02329 propionate_PrpR prop 99.7 1.3E-16 2.9E-21 182.1 16.2 145 304-466 212-357 (526)
29 COG1220 HslU ATP-dependent pro 99.7 1.9E-16 4.2E-21 166.8 15.2 84 589-672 318-411 (444)
30 PRK15424 propionate catabolism 99.7 1.8E-16 3.9E-21 181.1 15.4 145 304-466 219-372 (538)
31 PRK10820 DNA-binding transcrip 99.7 5.7E-16 1.2E-20 177.4 15.9 225 303-666 203-435 (520)
32 PRK11388 DNA-binding transcrip 99.7 3.9E-16 8.4E-21 182.9 14.7 219 303-666 324-552 (638)
33 TIGR02880 cbbX_cfxQ probable R 99.7 6.6E-15 1.4E-19 156.5 21.1 226 291-675 9-260 (284)
34 PRK15429 formate hydrogenlyase 99.6 2.2E-15 4.7E-20 178.1 18.0 223 305-666 377-607 (686)
35 COG1221 PspF Transcriptional r 99.6 1.3E-15 2.8E-20 167.1 13.5 147 301-466 75-223 (403)
36 PF00158 Sigma54_activat: Sigm 99.6 7.1E-16 1.5E-20 151.8 9.2 142 306-466 1-143 (168)
37 PRK10923 glnG nitrogen regulat 99.6 2.4E-15 5.1E-20 169.7 14.6 223 305-666 139-369 (469)
38 PF05496 RuvB_N: Holliday junc 99.6 2.9E-14 6.4E-19 145.1 20.1 108 303-446 23-131 (233)
39 TIGR02881 spore_V_K stage V sp 99.6 3.3E-14 7.1E-19 149.1 19.6 218 301-678 4-248 (261)
40 KOG2170 ATPase of the AAA+ sup 99.6 1.6E-14 3.5E-19 150.8 14.6 156 294-471 72-229 (344)
41 COG3283 TyrR Transcriptional r 99.6 2.4E-14 5.2E-19 151.9 15.0 219 303-665 203-429 (511)
42 TIGR02915 PEP_resp_reg putativ 99.6 1.5E-14 3.4E-19 162.0 14.5 223 305-666 140-370 (445)
43 COG3284 AcoR Transcriptional a 99.6 5.6E-15 1.2E-19 167.2 10.6 138 307-466 316-456 (606)
44 PRK11361 acetoacetate metaboli 99.6 3E-14 6.4E-19 160.0 15.3 143 305-466 144-287 (457)
45 TIGR01818 ntrC nitrogen regula 99.5 4E-14 8.6E-19 159.3 14.4 223 305-666 135-365 (463)
46 PRK15115 response regulator Gl 99.5 9.8E-14 2.1E-18 155.5 16.4 223 305-666 135-365 (444)
47 COG2256 MGS1 ATPase related to 99.5 1.3E-13 2.8E-18 149.0 15.9 103 305-445 25-133 (436)
48 TIGR02902 spore_lonB ATP-depen 99.5 5.6E-13 1.2E-17 153.1 19.7 125 305-446 66-205 (531)
49 PRK14956 DNA polymerase III su 99.4 2.2E-12 4.7E-17 144.9 18.2 136 304-466 18-160 (484)
50 PRK13531 regulatory ATPase Rav 99.4 2E-12 4.4E-17 144.8 16.3 146 292-466 8-156 (498)
51 PRK14949 DNA polymerase III su 99.4 4.5E-12 9.7E-17 149.8 19.0 134 304-465 16-157 (944)
52 PRK07003 DNA polymerase III su 99.4 4.8E-12 1E-16 147.2 18.6 136 303-466 15-158 (830)
53 PRK10365 transcriptional regul 99.4 1.6E-12 3.5E-17 145.3 13.9 222 306-666 141-370 (441)
54 TIGR00635 ruvB Holliday juncti 99.4 1.3E-11 2.9E-16 131.6 19.7 105 304-444 4-109 (305)
55 PRK12323 DNA polymerase III su 99.4 5.6E-12 1.2E-16 145.0 17.1 137 303-466 15-163 (700)
56 PRK14960 DNA polymerase III su 99.4 8.4E-12 1.8E-16 143.9 18.0 132 304-465 15-156 (702)
57 COG1223 Predicted ATPase (AAA+ 99.4 6.1E-12 1.3E-16 129.2 14.2 133 302-466 119-263 (368)
58 PRK14958 DNA polymerase III su 99.4 1.1E-11 2.4E-16 141.5 18.0 132 304-465 16-157 (509)
59 PLN03025 replication factor C 99.4 1E-11 2.2E-16 134.1 16.6 115 306-466 15-138 (319)
60 PRK00080 ruvB Holliday junctio 99.4 3.2E-11 7E-16 130.6 20.6 105 304-444 25-130 (328)
61 KOG0989 Replication factor C, 99.4 2.2E-11 4.7E-16 128.0 17.1 132 291-466 28-168 (346)
62 PRK14961 DNA polymerase III su 99.3 3.6E-11 7.9E-16 132.2 19.5 132 304-465 16-157 (363)
63 PRK07994 DNA polymerase III su 99.3 2.6E-11 5.5E-16 141.1 19.0 133 303-465 15-157 (647)
64 PRK14952 DNA polymerase III su 99.3 2.9E-11 6.2E-16 139.8 19.3 134 304-465 13-156 (584)
65 PRK07764 DNA polymerase III su 99.3 1.5E-11 3.2E-16 147.1 17.3 134 304-465 15-158 (824)
66 PRK13342 recombination factor 99.3 2.3E-11 5E-16 135.9 17.9 105 305-444 13-120 (413)
67 PRK14951 DNA polymerase III su 99.3 2.7E-11 5.7E-16 140.6 18.6 133 303-465 15-162 (618)
68 PRK14957 DNA polymerase III su 99.3 3E-11 6.5E-16 138.5 18.7 135 304-465 16-157 (546)
69 PRK14962 DNA polymerase III su 99.3 2.7E-11 5.8E-16 137.2 17.9 131 304-465 14-155 (472)
70 PRK14959 DNA polymerase III su 99.3 2.3E-11 5E-16 140.5 17.6 135 304-465 16-157 (624)
71 PRK14964 DNA polymerase III su 99.3 3.1E-11 6.8E-16 136.7 18.3 133 304-465 13-154 (491)
72 COG2255 RuvB Holliday junction 99.3 6.1E-11 1.3E-15 123.5 18.6 106 304-445 26-132 (332)
73 PRK05563 DNA polymerase III su 99.3 7.6E-11 1.6E-15 136.3 19.5 135 303-465 15-157 (559)
74 PRK08691 DNA polymerase III su 99.3 4.9E-11 1.1E-15 138.7 17.3 131 304-465 16-157 (709)
75 PRK14965 DNA polymerase III su 99.3 6.8E-11 1.5E-15 137.2 18.2 134 303-465 15-157 (576)
76 PRK13341 recombination factor 99.3 9.4E-11 2E-15 138.6 18.8 105 305-444 29-137 (725)
77 PRK08451 DNA polymerase III su 99.3 1.7E-10 3.8E-15 131.8 19.9 130 304-465 14-155 (535)
78 TIGR02903 spore_lon_C ATP-depe 99.3 7.7E-11 1.7E-15 137.7 16.9 125 304-445 154-294 (615)
79 PRK07133 DNA polymerase III su 99.3 8.3E-11 1.8E-15 137.8 16.5 136 303-465 17-156 (725)
80 PRK06645 DNA polymerase III su 99.3 2.3E-10 4.9E-15 130.5 19.4 133 304-465 21-166 (507)
81 PRK14963 DNA polymerase III su 99.2 2.3E-10 5.1E-15 130.6 19.2 133 304-465 14-154 (504)
82 PRK14955 DNA polymerase III su 99.2 1.8E-10 3.8E-15 128.2 17.7 133 304-465 16-165 (397)
83 TIGR02640 gas_vesic_GvpN gas v 99.2 3.8E-11 8.3E-16 126.2 11.4 113 340-466 23-160 (262)
84 PRK06305 DNA polymerase III su 99.2 2.3E-10 5E-15 129.2 18.4 133 304-465 17-159 (451)
85 COG1222 RPT1 ATP-dependent 26S 99.2 1.7E-11 3.6E-16 131.1 8.5 129 305-466 152-299 (406)
86 PRK14969 DNA polymerase III su 99.2 2E-10 4.4E-15 131.9 17.8 135 304-465 16-157 (527)
87 PRK14954 DNA polymerase III su 99.2 3.5E-10 7.6E-15 131.7 19.0 134 303-465 15-165 (620)
88 CHL00195 ycf46 Ycf46; Provisio 99.2 4E-10 8.7E-15 128.0 19.0 124 305-466 229-369 (489)
89 PRK05896 DNA polymerase III su 99.2 3E-10 6.5E-15 130.8 18.1 135 304-465 16-157 (605)
90 PRK14953 DNA polymerase III su 99.2 4.2E-10 9E-15 128.1 18.7 132 304-465 16-157 (486)
91 PRK09111 DNA polymerase III su 99.2 4.2E-10 9E-15 130.7 18.7 136 303-465 23-170 (598)
92 TIGR02397 dnaX_nterm DNA polym 99.2 6.9E-10 1.5E-14 120.6 19.0 135 304-465 14-155 (355)
93 PRK03992 proteasome-activating 99.2 2.7E-10 5.9E-15 126.4 15.7 137 305-466 132-279 (389)
94 COG0714 MoxR-like ATPases [Gen 99.2 7.7E-11 1.7E-15 127.8 10.9 144 292-466 12-163 (329)
95 PRK06647 DNA polymerase III su 99.2 6.5E-10 1.4E-14 128.5 19.0 131 304-465 16-157 (563)
96 PRK14971 DNA polymerase III su 99.2 8.3E-10 1.8E-14 128.9 19.4 137 303-465 16-159 (614)
97 PRK12402 replication factor C 99.2 1E-09 2.2E-14 118.2 18.4 135 304-465 15-163 (337)
98 TIGR01243 CDC48 AAA family ATP 99.2 4.6E-10 9.9E-15 134.0 16.8 135 304-466 453-599 (733)
99 TIGR02442 Cob-chelat-sub cobal 99.1 3.7E-10 8E-15 132.6 15.0 137 304-466 4-178 (633)
100 PRK14948 DNA polymerase III su 99.1 1.5E-09 3.2E-14 126.9 19.1 135 304-465 16-159 (620)
101 PF07728 AAA_5: AAA domain (dy 99.1 7.2E-11 1.6E-15 111.5 6.8 115 340-468 1-125 (139)
102 PHA02544 44 clamp loader, smal 99.1 2.2E-09 4.7E-14 115.2 18.3 123 291-466 13-140 (316)
103 KOG0730 AAA+-type ATPase [Post 99.1 1E-09 2.2E-14 125.0 16.2 127 304-466 434-579 (693)
104 PRK14950 DNA polymerase III su 99.1 2E-09 4.4E-14 125.4 19.0 136 303-465 15-158 (585)
105 PRK04195 replication factor C 99.1 2E-09 4.3E-14 122.7 18.6 103 306-442 16-128 (482)
106 PRK14970 DNA polymerase III su 99.1 2.8E-09 6.1E-14 117.1 19.1 119 304-465 17-146 (367)
107 TIGR00368 Mg chelatase-related 99.1 1.9E-09 4.1E-14 123.0 18.3 140 304-467 192-348 (499)
108 COG2812 DnaX DNA polymerase II 99.1 6.2E-10 1.3E-14 126.2 14.0 135 303-465 15-157 (515)
109 PRK06893 DNA replication initi 99.1 2.3E-09 5E-14 110.6 16.5 55 600-665 154-208 (229)
110 PF07726 AAA_3: ATPase family 99.1 4.5E-11 9.8E-16 112.1 3.4 110 340-466 1-112 (131)
111 KOG2028 ATPase related to the 99.1 8.1E-10 1.8E-14 118.1 12.7 119 291-446 130-252 (554)
112 TIGR01650 PD_CobS cobaltochela 99.1 5.4E-09 1.2E-13 112.8 19.2 113 340-466 66-187 (327)
113 PRK00440 rfc replication facto 99.1 4.1E-09 8.9E-14 112.5 18.4 116 306-466 19-141 (319)
114 PRK08903 DnaA regulatory inact 99.1 5.2E-09 1.1E-13 107.2 18.1 74 339-442 43-116 (227)
115 PTZ00454 26S protease regulato 99.1 2.9E-09 6.3E-14 118.4 16.0 135 305-466 146-293 (398)
116 PF00004 AAA: ATPase family as 99.0 7.8E-10 1.7E-14 102.1 9.6 99 341-466 1-111 (132)
117 CHL00081 chlI Mg-protoporyphyr 99.0 1.7E-09 3.7E-14 118.0 13.7 146 304-466 17-196 (350)
118 PRK07940 DNA polymerase III su 99.0 1.6E-09 3.4E-14 120.3 13.6 129 304-443 5-144 (394)
119 TIGR03420 DnaA_homol_Hda DnaA 99.0 4.1E-09 8.9E-14 107.2 15.6 96 308-442 21-118 (226)
120 PHA02244 ATPase-like protein 99.0 1.9E-09 4.1E-14 117.6 13.5 137 302-466 94-230 (383)
121 CHL00176 ftsH cell division pr 99.0 7.5E-09 1.6E-13 121.2 19.2 134 304-466 183-330 (638)
122 PRK13765 ATP-dependent proteas 99.0 1.4E-09 3E-14 126.9 13.0 53 296-363 23-75 (637)
123 KOG0733 Nuclear AAA ATPase (VC 99.0 1.3E-09 2.8E-14 122.7 12.1 146 304-483 190-353 (802)
124 PTZ00361 26 proteosome regulat 99.0 2.2E-09 4.8E-14 120.5 14.1 137 305-466 184-331 (438)
125 PRK08727 hypothetical protein; 99.0 9.2E-09 2E-13 106.5 17.6 67 592-669 145-213 (233)
126 PRK13407 bchI magnesium chelat 99.0 3.5E-09 7.5E-14 115.1 14.9 148 304-466 8-180 (334)
127 TIGR01242 26Sp45 26S proteasom 99.0 3E-09 6.5E-14 116.9 14.3 137 305-466 123-270 (364)
128 PRK08084 DNA replication initi 99.0 6.9E-09 1.5E-13 107.5 15.9 64 591-665 149-214 (235)
129 TIGR02928 orc1/cdc6 family rep 99.0 8.9E-09 1.9E-13 112.5 17.6 146 303-466 14-174 (365)
130 KOG0734 AAA+-type ATPase conta 99.0 6.3E-09 1.4E-13 115.7 16.2 133 303-466 303-448 (752)
131 TIGR02030 BchI-ChlI magnesium 99.0 3.6E-09 7.8E-14 115.2 14.2 146 304-466 4-183 (337)
132 TIGR00764 lon_rel lon-related 99.0 2.3E-09 4.9E-14 125.2 13.4 53 297-364 11-63 (608)
133 PF01078 Mg_chelatase: Magnesi 99.0 7.1E-10 1.5E-14 112.2 7.9 143 304-468 3-160 (206)
134 TIGR02639 ClpA ATP-dependent C 99.0 6.2E-09 1.3E-13 124.3 17.0 121 304-466 182-320 (731)
135 COG1224 TIP49 DNA helicase TIP 99.0 1.8E-08 3.9E-13 108.0 18.4 66 302-376 37-102 (450)
136 PLN00020 ribulose bisphosphate 99.0 3.6E-08 7.8E-13 107.3 20.5 113 336-466 146-277 (413)
137 PTZ00112 origin recognition co 99.0 8.4E-09 1.8E-13 121.2 16.6 143 302-465 753-910 (1164)
138 PF13177 DNA_pol3_delta2: DNA 99.0 3.8E-09 8.3E-14 103.5 11.8 131 308-466 1-141 (162)
139 TIGR03345 VI_ClpV1 type VI sec 99.0 1E-08 2.2E-13 124.0 17.9 121 304-466 187-325 (852)
140 PF06309 Torsin: Torsin; Inte 99.0 2E-09 4.3E-14 100.8 9.3 112 293-422 14-127 (127)
141 COG0464 SpoVK ATPases of the A 99.0 1E-08 2.3E-13 117.0 16.8 133 306-466 244-387 (494)
142 KOG0733 Nuclear AAA ATPase (VC 99.0 1.7E-09 3.7E-14 121.8 9.8 127 304-466 511-656 (802)
143 PRK09112 DNA polymerase III su 99.0 1.3E-08 2.8E-13 111.6 15.9 136 304-465 23-179 (351)
144 KOG0727 26S proteasome regulat 98.9 1.2E-09 2.5E-14 112.1 7.1 105 337-466 188-303 (408)
145 TIGR01241 FtsH_fam ATP-depende 98.9 1E-08 2.2E-13 117.3 15.5 133 305-466 56-202 (495)
146 KOG0738 AAA+-type ATPase [Post 98.9 3.1E-08 6.7E-13 107.1 18.0 112 304-441 212-341 (491)
147 PTZ00111 DNA replication licen 98.9 1.6E-08 3.5E-13 120.5 17.3 156 294-466 440-609 (915)
148 TIGR03689 pup_AAA proteasome A 98.9 5.9E-09 1.3E-13 118.8 12.8 138 304-466 182-342 (512)
149 PF14532 Sigma54_activ_2: Sigm 98.9 3.8E-09 8.2E-14 100.3 7.7 109 307-466 1-109 (138)
150 TIGR00678 holB DNA polymerase 98.9 5.8E-08 1.3E-12 96.7 15.7 112 337-465 13-134 (188)
151 PRK00411 cdc6 cell division co 98.9 7E-08 1.5E-12 106.6 17.9 142 302-466 28-182 (394)
152 COG0470 HolB ATPase involved i 98.9 1.5E-08 3.2E-13 108.3 11.8 137 305-466 2-148 (325)
153 PRK05642 DNA replication initi 98.8 1.1E-07 2.3E-12 98.6 16.9 64 592-666 149-214 (234)
154 PRK07471 DNA polymerase III su 98.8 1.4E-08 3.1E-13 111.8 10.6 139 304-466 19-180 (365)
155 COG0606 Predicted ATPase with 98.8 2.9E-08 6.2E-13 110.4 12.9 140 305-467 180-336 (490)
156 PRK07399 DNA polymerase III su 98.8 2E-08 4.4E-13 108.5 11.5 137 303-465 3-161 (314)
157 PF06068 TIP49: TIP49 C-termin 98.8 1.1E-07 2.3E-12 103.4 16.6 65 303-376 23-87 (398)
158 KOG0736 Peroxisome assembly fa 98.8 1.6E-08 3.4E-13 116.7 10.0 129 304-466 672-820 (953)
159 cd00009 AAA The AAA+ (ATPases 98.8 4E-08 8.6E-13 90.4 11.0 129 307-466 1-129 (151)
160 smart00763 AAA_PrkA PrkA AAA d 98.8 6.3E-08 1.4E-12 105.7 14.1 154 305-466 52-286 (361)
161 TIGR02031 BchD-ChlD magnesium 98.8 5.6E-08 1.2E-12 113.4 14.5 116 338-466 16-136 (589)
162 PRK10865 protein disaggregatio 98.8 6.1E-08 1.3E-12 117.5 15.2 121 304-466 178-316 (857)
163 KOG0728 26S proteasome regulat 98.8 5.1E-08 1.1E-12 100.2 12.0 130 304-466 147-295 (404)
164 PRK05564 DNA polymerase III su 98.8 3.4E-08 7.3E-13 106.5 10.8 124 304-465 4-131 (313)
165 PRK11034 clpA ATP-dependent Cl 98.8 1.2E-07 2.6E-12 113.0 16.2 128 304-466 186-324 (758)
166 TIGR03346 chaperone_ClpB ATP-d 98.7 1.3E-07 2.9E-12 114.8 16.6 121 304-466 173-311 (852)
167 PF00308 Bac_DnaA: Bacterial d 98.7 2.7E-07 5.9E-12 94.8 16.5 66 590-666 147-214 (219)
168 CHL00095 clpC Clp protease ATP 98.7 1.9E-07 4.1E-12 113.0 17.9 113 304-445 179-308 (821)
169 smart00350 MCM minichromosome 98.7 4E-08 8.7E-13 112.8 11.0 159 294-467 193-353 (509)
170 KOG0731 AAA+-type ATPase conta 98.7 2.8E-08 6.1E-13 116.2 9.1 136 303-467 310-460 (774)
171 CHL00206 ycf2 Ycf2; Provisiona 98.7 1.6E-07 3.5E-12 117.4 15.7 122 336-466 1628-1781(2281)
172 TIGR00362 DnaA chromosomal rep 98.7 1.3E-07 2.8E-12 105.5 13.8 63 593-666 252-316 (405)
173 PRK12422 chromosomal replicati 98.7 4.9E-07 1.1E-11 102.2 18.4 62 593-665 255-318 (445)
174 PRK09862 putative ATP-dependen 98.7 1.4E-07 3.1E-12 107.6 13.8 138 305-466 192-346 (506)
175 KOG0991 Replication factor C, 98.7 3.9E-08 8.4E-13 100.2 8.1 128 291-469 19-155 (333)
176 PRK08058 DNA polymerase III su 98.7 5.9E-08 1.3E-12 105.6 10.2 133 304-465 5-148 (329)
177 PRK00149 dnaA chromosomal repl 98.7 3.7E-07 8E-12 103.3 16.3 64 593-667 264-329 (450)
178 PRK14087 dnaA chromosomal repl 98.7 8.1E-07 1.7E-11 100.6 18.1 60 600-668 268-327 (450)
179 COG4650 RtcR Sigma54-dependent 98.6 1.1E-07 2.3E-12 99.6 10.0 129 301-447 181-313 (531)
180 PRK14088 dnaA chromosomal repl 98.6 9.4E-07 2E-11 99.9 17.1 56 600-666 256-311 (440)
181 PF10431 ClpB_D2-small: C-term 98.6 1.3E-07 2.8E-12 82.0 7.7 77 607-686 1-81 (81)
182 COG1474 CDC6 Cdc6-related prot 98.6 5.4E-07 1.2E-11 99.4 14.6 142 303-466 16-165 (366)
183 KOG0726 26S proteasome regulat 98.6 5E-08 1.1E-12 102.1 6.0 130 304-466 185-333 (440)
184 TIGR01243 CDC48 AAA family ATP 98.6 2.2E-07 4.7E-12 111.3 12.0 125 306-466 180-323 (733)
185 PRK04132 replication factor C 98.6 7.1E-07 1.5E-11 107.0 16.0 95 339-466 565-669 (846)
186 PRK08769 DNA polymerase III su 98.6 2E-07 4.3E-12 101.0 10.3 139 304-466 4-152 (319)
187 PRK14086 dnaA chromosomal repl 98.6 1.2E-06 2.6E-11 101.5 17.2 63 593-666 430-494 (617)
188 PF05673 DUF815: Protein of un 98.6 4.1E-06 8.9E-11 87.0 19.4 120 306-466 29-150 (249)
189 KOG0729 26S proteasome regulat 98.6 2.4E-07 5.1E-12 96.1 10.1 129 305-466 178-325 (435)
190 PRK10733 hflB ATP-dependent me 98.6 5.8E-07 1.3E-11 106.0 14.9 131 305-466 153-299 (644)
191 PRK07993 DNA polymerase III su 98.6 1.5E-07 3.3E-12 102.5 8.6 134 305-466 3-147 (334)
192 PRK06871 DNA polymerase III su 98.6 2.6E-07 5.6E-12 100.3 10.1 133 306-466 4-146 (325)
193 COG1239 ChlI Mg-chelatase subu 98.5 2E-06 4.4E-11 94.8 16.9 150 301-467 14-197 (423)
194 PRK11331 5-methylcytosine-spec 98.5 5.3E-07 1.1E-11 101.0 11.9 145 302-466 174-334 (459)
195 KOG0739 AAA+-type ATPase [Post 98.5 1.3E-07 2.8E-12 99.3 6.5 129 305-467 134-279 (439)
196 KOG0735 AAA+-type ATPase [Post 98.5 2.2E-07 4.9E-12 106.5 8.5 131 304-466 667-812 (952)
197 PRK05707 DNA polymerase III su 98.5 1.1E-06 2.3E-11 95.7 13.0 131 306-466 5-145 (328)
198 PRK06090 DNA polymerase III su 98.5 4.4E-07 9.5E-12 98.3 9.6 134 304-466 3-147 (319)
199 PRK06620 hypothetical protein; 98.5 2.5E-06 5.5E-11 87.4 14.5 63 592-665 130-194 (214)
200 PRK09087 hypothetical protein; 98.5 5E-06 1.1E-10 85.9 16.7 64 592-666 136-201 (226)
201 PRK12377 putative replication 98.5 4.3E-07 9.2E-12 95.1 8.8 106 339-470 102-209 (248)
202 KOG1942 DNA helicase, TBP-inte 98.4 1.1E-05 2.5E-10 84.8 18.1 50 589-648 350-399 (456)
203 smart00382 AAA ATPases associa 98.4 5.1E-07 1.1E-11 81.9 7.3 121 339-466 3-125 (148)
204 KOG0651 26S proteasome regulat 98.4 7.5E-07 1.6E-11 94.3 9.3 137 306-467 134-281 (388)
205 COG0465 HflB ATP-dependent Zn 98.4 9.2E-07 2E-11 101.9 10.0 136 303-467 149-298 (596)
206 KOG0744 AAA+-type ATPase [Post 98.4 1.4E-06 3.1E-11 92.6 10.2 104 339-466 178-306 (423)
207 PRK06964 DNA polymerase III su 98.4 1.8E-06 3.8E-11 94.5 11.1 136 306-466 3-171 (342)
208 TIGR00602 rad24 checkpoint pro 98.4 8.7E-06 1.9E-10 95.4 17.3 59 291-362 76-134 (637)
209 TIGR03015 pepcterm_ATPase puta 98.4 3.7E-05 8.1E-10 80.3 20.3 69 593-668 178-246 (269)
210 KOG0652 26S proteasome regulat 98.3 1.1E-06 2.4E-11 90.9 8.1 127 305-466 172-319 (424)
211 KOG0737 AAA+-type ATPase [Post 98.3 1.3E-06 2.8E-11 94.5 8.9 139 304-469 92-243 (386)
212 COG1241 MCM2 Predicted ATPase 98.3 8E-06 1.7E-10 95.7 15.7 138 296-448 278-415 (682)
213 PRK08699 DNA polymerase III su 98.3 6.6E-06 1.4E-10 89.5 12.7 124 306-443 3-140 (325)
214 PRK08116 hypothetical protein; 98.3 4.8E-06 1E-10 88.2 11.0 108 339-470 115-224 (268)
215 PRK05917 DNA polymerase III su 98.3 3.2E-06 6.9E-11 90.3 9.3 112 337-466 18-134 (290)
216 KOG0743 AAA+-type ATPase [Post 98.2 6.5E-06 1.4E-10 91.3 10.2 92 340-466 237-347 (457)
217 KOG2680 DNA helicase TIP49, TB 98.2 4.6E-05 9.9E-10 80.6 15.1 67 301-376 37-103 (454)
218 PRK06526 transposase; Provisio 98.1 3.3E-06 7.2E-11 88.8 4.5 103 339-470 99-204 (254)
219 PRK07276 DNA polymerase III su 98.0 1.9E-05 4E-10 84.6 9.5 128 308-466 6-143 (290)
220 PRK08939 primosomal protein Dn 98.0 1.6E-05 3.5E-10 85.8 9.0 105 339-469 157-263 (306)
221 KOG0732 AAA+-type ATPase conta 98.0 1.8E-05 3.9E-10 95.6 10.0 142 303-467 264-416 (1080)
222 KOG2035 Replication factor C, 98.0 1.6E-05 3.5E-10 83.3 8.1 121 339-470 35-170 (351)
223 COG0593 DnaA ATPase involved i 98.0 0.00026 5.6E-09 78.9 17.6 58 601-669 238-295 (408)
224 PRK07952 DNA replication prote 98.0 4.6E-05 9.9E-10 79.8 11.1 106 339-470 100-208 (244)
225 KOG0740 AAA+-type ATPase [Post 98.0 2.4E-05 5.1E-10 87.2 9.3 100 303-428 152-257 (428)
226 PRK05818 DNA polymerase III su 98.0 1.8E-05 3.8E-10 83.2 7.8 113 337-466 6-127 (261)
227 PRK13406 bchD magnesium chelat 98.0 2.5E-05 5.3E-10 91.1 9.5 112 338-463 25-142 (584)
228 PRK06835 DNA replication prote 97.9 3.7E-05 8.1E-10 83.8 10.3 107 339-470 184-292 (329)
229 PF01695 IstB_IS21: IstB-like 97.9 6E-06 1.3E-10 82.3 3.7 104 339-470 48-153 (178)
230 PF13173 AAA_14: AAA domain 97.9 3E-05 6.4E-10 72.7 8.1 84 340-443 4-87 (128)
231 PF00910 RNA_helicase: RNA hel 97.9 2.8E-05 6E-10 70.9 7.7 94 341-466 1-107 (107)
232 KOG0742 AAA+-type ATPase [Post 97.9 0.0002 4.3E-09 78.6 15.3 26 337-362 383-408 (630)
233 COG2607 Predicted ATPase (AAA+ 97.9 0.0004 8.7E-09 71.9 16.4 120 306-466 62-183 (287)
234 PF13401 AAA_22: AAA domain; P 97.9 4.3E-06 9.3E-11 77.4 2.0 100 338-441 4-113 (131)
235 PRK08181 transposase; Validate 97.9 1.7E-05 3.7E-10 84.1 6.6 103 340-470 108-212 (269)
236 KOG0741 AAA+-type ATPase [Post 97.9 1.5E-05 3.1E-10 89.5 5.6 105 340-466 258-378 (744)
237 COG0542 clpA ATP-binding subun 97.9 4.8E-05 1E-09 90.2 10.0 114 304-446 170-301 (786)
238 PF00493 MCM: MCM2/3/5 family 97.8 4.9E-06 1.1E-10 90.8 1.1 156 293-466 13-173 (331)
239 COG1484 DnaC DNA replication p 97.8 5.1E-05 1.1E-09 79.9 7.9 105 340-471 107-213 (254)
240 PRK09183 transposase/IS protei 97.7 4.1E-05 8.9E-10 80.8 6.1 104 340-470 104-209 (259)
241 KOG0730 AAA+-type ATPase [Post 97.7 7.7E-05 1.7E-09 86.0 8.5 136 304-466 184-329 (693)
242 PRK06921 hypothetical protein; 97.7 7.3E-05 1.6E-09 79.2 7.7 103 339-470 118-228 (266)
243 KOG1969 DNA replication checkp 97.7 0.00012 2.6E-09 85.2 9.5 82 335-441 322-412 (877)
244 PF03215 Rad17: Rad17 cell cyc 97.7 0.0025 5.4E-08 73.7 20.0 49 306-362 21-69 (519)
245 KOG0478 DNA replication licens 97.7 0.00064 1.4E-08 78.7 14.9 138 294-447 419-557 (804)
246 KOG0741 AAA+-type ATPase [Post 97.7 0.00014 3.1E-09 81.8 9.1 86 337-440 537-628 (744)
247 KOG0990 Replication factor C, 97.7 3.6E-05 7.7E-10 82.2 3.9 121 305-468 42-172 (360)
248 PRK07132 DNA polymerase III su 97.6 0.00048 1E-08 74.3 12.5 104 338-465 18-128 (299)
249 KOG2227 Pre-initiation complex 97.5 0.00097 2.1E-08 74.6 12.9 128 303-443 149-283 (529)
250 KOG0480 DNA replication licens 97.5 0.00029 6.3E-09 80.9 8.7 163 291-468 332-496 (764)
251 PRK15455 PrkA family serine pr 97.5 0.00016 3.4E-09 83.4 6.3 54 303-363 75-128 (644)
252 KOG0735 AAA+-type ATPase [Post 97.4 0.0031 6.7E-08 73.6 15.7 75 338-428 431-506 (952)
253 cd01131 PilT Pilus retraction 97.4 0.00095 2.1E-08 67.5 10.5 96 339-444 2-100 (198)
254 PF01637 Arch_ATPase: Archaeal 97.4 0.00099 2.1E-08 67.0 10.1 123 307-442 2-150 (234)
255 KOG0477 DNA replication licens 97.3 0.00022 4.9E-09 81.5 5.5 156 300-470 445-602 (854)
256 PF12774 AAA_6: Hydrolytic ATP 97.3 0.00059 1.3E-08 70.9 8.2 76 340-441 34-109 (231)
257 PF12775 AAA_7: P-loop contain 97.3 0.00054 1.2E-08 72.9 6.9 118 339-467 34-158 (272)
258 COG5271 MDN1 AAA ATPase contai 97.2 0.0035 7.6E-08 78.1 12.8 113 339-465 889-1007(4600)
259 PF05729 NACHT: NACHT domain 97.1 0.0015 3.2E-08 62.3 7.9 90 340-432 2-97 (166)
260 COG1618 Predicted nucleotide k 97.1 0.0019 4E-08 63.4 7.8 26 338-363 5-30 (179)
261 TIGR02688 conserved hypothetic 97.0 0.0039 8.5E-08 69.8 11.2 99 339-467 210-313 (449)
262 TIGR01425 SRP54_euk signal rec 97.0 0.0085 1.8E-07 67.6 13.9 169 290-470 43-228 (429)
263 TIGR01420 pilT_fam pilus retra 97.0 0.0037 8.1E-08 68.6 10.8 97 338-444 122-221 (343)
264 KOG3347 Predicted nucleotide k 97.0 0.00094 2E-08 64.6 4.8 112 339-490 8-123 (176)
265 PF13604 AAA_30: AAA domain; P 96.9 0.0029 6.4E-08 63.9 8.3 89 339-442 19-119 (196)
266 PF00931 NB-ARC: NB-ARC domain 96.9 0.0014 3.1E-08 68.9 6.2 88 337-429 18-114 (287)
267 PF03266 NTPase_1: NTPase; In 96.8 0.001 2.2E-08 65.8 3.6 99 340-442 1-124 (168)
268 PF13207 AAA_17: AAA domain; P 96.8 0.0015 3.2E-08 59.8 4.3 32 340-374 1-32 (121)
269 KOG1970 Checkpoint RAD17-RFC c 96.8 0.012 2.7E-07 67.2 12.1 46 311-362 89-134 (634)
270 PRK06581 DNA polymerase III su 96.7 0.0098 2.1E-07 62.1 10.3 108 338-465 15-127 (263)
271 PRK12723 flagellar biosynthesi 96.7 0.014 3.1E-07 65.1 12.4 118 338-470 174-301 (388)
272 cd01120 RecA-like_NTPases RecA 96.7 0.0052 1.1E-07 58.0 7.7 36 341-376 2-37 (165)
273 PHA02774 E1; Provisional 96.7 0.0063 1.4E-07 70.5 9.3 96 339-467 435-533 (613)
274 KOG0479 DNA replication licens 96.7 0.0054 1.2E-07 70.2 8.4 158 298-471 295-455 (818)
275 KOG0736 Peroxisome assembly fa 96.6 0.0095 2E-07 70.2 10.4 132 306-466 403-542 (953)
276 TIGR01618 phage_P_loop phage n 96.6 0.0037 8.1E-08 64.6 6.3 85 336-432 10-97 (220)
277 COG5271 MDN1 AAA ATPase contai 96.6 0.015 3.3E-07 72.9 11.9 112 339-465 150-267 (4600)
278 PRK14974 cell division protein 96.6 0.012 2.5E-07 64.7 10.3 120 337-468 139-266 (336)
279 cd01129 PulE-GspE PulE/GspE Th 96.6 0.018 4E-07 61.0 11.5 95 338-444 80-175 (264)
280 PRK04296 thymidine kinase; Pro 96.6 0.011 2.4E-07 59.5 9.3 97 340-440 4-102 (190)
281 PF00437 T2SE: Type II/IV secr 96.6 0.0062 1.3E-07 64.1 7.9 96 338-444 127-222 (270)
282 KOG1808 AAA ATPase containing 96.5 0.0063 1.4E-07 78.0 8.7 114 339-466 441-560 (1856)
283 TIGR02525 plasmid_TraJ plasmid 96.5 0.016 3.4E-07 64.6 10.4 96 339-444 150-251 (372)
284 PRK10867 signal recognition pa 96.4 0.015 3.2E-07 65.9 10.3 87 290-376 43-139 (433)
285 TIGR00064 ftsY signal recognit 96.4 0.011 2.3E-07 63.1 8.6 86 291-376 20-110 (272)
286 PRK10416 signal recognition pa 96.4 0.063 1.4E-06 58.5 14.7 40 337-376 113-152 (318)
287 PF12780 AAA_8: P-loop contain 96.4 0.016 3.4E-07 61.7 9.7 107 306-447 10-120 (268)
288 PF13191 AAA_16: AAA ATPase do 96.3 0.003 6.5E-08 61.6 3.6 62 305-376 1-62 (185)
289 PHA00729 NTP-binding motif con 96.3 0.0073 1.6E-07 62.6 6.4 24 339-362 18-41 (226)
290 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.023 5E-07 62.9 10.4 97 338-444 134-238 (358)
291 KOG1514 Origin recognition com 96.3 0.24 5.2E-06 58.4 18.8 144 301-466 393-550 (767)
292 PF05621 TniB: Bacterial TniB 96.3 0.023 5.1E-07 61.1 10.1 139 296-441 26-173 (302)
293 PRK11889 flhF flagellar biosyn 96.3 0.035 7.6E-07 62.1 11.6 144 291-442 193-348 (436)
294 COG3854 SpoIIIAA ncharacterize 96.2 0.011 2.5E-07 61.1 7.1 93 339-443 138-243 (308)
295 PRK00131 aroK shikimate kinase 96.2 0.0057 1.2E-07 59.2 4.6 31 338-371 4-34 (175)
296 PRK05703 flhF flagellar biosyn 96.2 0.024 5.2E-07 64.1 10.2 117 339-468 222-344 (424)
297 PRK14722 flhF flagellar biosyn 96.1 0.053 1.1E-06 60.4 12.3 25 338-362 137-161 (374)
298 cd01130 VirB11-like_ATPase Typ 96.1 0.032 6.9E-07 55.7 9.7 94 339-444 26-125 (186)
299 PF08298 AAA_PrkA: PrkA AAA do 96.1 0.011 2.4E-07 64.8 6.5 64 303-375 60-123 (358)
300 PRK08118 topology modulation p 96.0 0.0054 1.2E-07 60.5 3.7 32 340-374 3-34 (167)
301 TIGR02782 TrbB_P P-type conjug 96.0 0.04 8.6E-07 59.5 10.6 94 339-444 133-229 (299)
302 KOG0481 DNA replication licens 96.0 0.016 3.5E-07 65.5 7.6 154 298-470 325-484 (729)
303 TIGR02538 type_IV_pilB type IV 96.0 0.024 5.2E-07 66.4 9.5 96 337-444 315-411 (564)
304 PRK12724 flagellar biosynthesi 96.0 0.075 1.6E-06 59.9 12.9 122 338-470 223-348 (432)
305 PF05272 VirE: Virulence-assoc 96.0 0.022 4.8E-07 57.9 7.8 96 336-466 50-149 (198)
306 PF05970 PIF1: PIF1-like helic 96.0 0.027 5.9E-07 62.4 9.2 137 309-465 6-149 (364)
307 PRK10536 hypothetical protein; 95.9 0.033 7.2E-07 58.9 9.1 22 340-361 76-97 (262)
308 PRK06696 uridine kinase; Valid 95.9 0.018 4E-07 59.1 7.0 57 310-376 4-60 (223)
309 TIGR02788 VirB11 P-type DNA tr 95.9 0.052 1.1E-06 58.8 10.8 96 339-443 145-242 (308)
310 PRK13900 type IV secretion sys 95.9 0.055 1.2E-06 59.4 11.0 96 339-444 161-260 (332)
311 KOG0482 DNA replication licens 95.9 0.025 5.4E-07 64.0 8.3 160 294-469 332-494 (721)
312 COG0529 CysC Adenylylsulfate k 95.9 0.036 7.8E-07 55.4 8.5 99 338-446 23-123 (197)
313 PRK13851 type IV secretion sys 95.9 0.051 1.1E-06 59.9 10.5 98 339-444 163-261 (344)
314 PRK13947 shikimate kinase; Pro 95.8 0.0088 1.9E-07 58.2 4.2 32 340-374 3-34 (171)
315 PF13671 AAA_33: AAA domain; P 95.8 0.0068 1.5E-07 56.9 3.2 23 340-362 1-23 (143)
316 PF03969 AFG1_ATPase: AFG1-lik 95.8 0.018 3.9E-07 63.9 6.8 111 337-471 61-172 (362)
317 PRK00771 signal recognition pa 95.8 0.034 7.3E-07 63.2 9.0 86 290-376 39-133 (437)
318 PF10923 DUF2791: P-loop Domai 95.7 0.72 1.6E-05 52.1 19.0 80 592-675 318-400 (416)
319 PRK03839 putative kinase; Prov 95.7 0.01 2.3E-07 58.5 3.9 30 340-372 2-31 (180)
320 TIGR02533 type_II_gspE general 95.6 0.072 1.6E-06 61.4 11.1 96 337-444 241-337 (486)
321 TIGR00959 ffh signal recogniti 95.6 0.044 9.6E-07 62.1 9.1 87 290-376 42-138 (428)
322 cd00464 SK Shikimate kinase (S 95.6 0.012 2.6E-07 56.0 3.9 31 340-373 1-31 (154)
323 COG2804 PulE Type II secretory 95.6 0.059 1.3E-06 61.5 9.9 98 336-445 256-354 (500)
324 PRK13894 conjugal transfer ATP 95.6 0.055 1.2E-06 59.1 9.4 94 339-444 149-244 (319)
325 cd01124 KaiC KaiC is a circadi 95.6 0.024 5.1E-07 55.7 6.0 35 341-375 2-36 (187)
326 PRK10436 hypothetical protein; 95.5 0.062 1.3E-06 61.5 10.0 96 337-444 217-313 (462)
327 PRK07261 topology modulation p 95.5 0.013 2.8E-07 57.9 3.9 32 340-374 2-33 (171)
328 PRK00625 shikimate kinase; Pro 95.4 0.015 3.2E-07 57.9 4.1 31 340-373 2-32 (173)
329 PRK03846 adenylylsulfate kinas 95.3 0.056 1.2E-06 54.5 7.9 38 338-375 24-61 (198)
330 PRK08154 anaerobic benzoate ca 95.3 0.042 9.1E-07 59.5 7.5 34 337-373 132-165 (309)
331 TIGR02858 spore_III_AA stage I 95.3 0.044 9.5E-07 58.4 7.3 25 339-363 112-136 (270)
332 PF07693 KAP_NTPase: KAP famil 95.3 0.13 2.7E-06 55.4 10.9 41 337-377 19-62 (325)
333 TIGR03499 FlhF flagellar biosy 95.2 0.082 1.8E-06 56.6 9.2 84 291-376 149-234 (282)
334 TIGR01313 therm_gnt_kin carboh 95.2 0.014 3.1E-07 56.4 3.2 22 341-362 1-22 (163)
335 PRK06217 hypothetical protein; 95.2 0.017 3.7E-07 57.4 3.8 31 340-373 3-33 (183)
336 PF13238 AAA_18: AAA domain; P 95.2 0.016 3.4E-07 53.0 3.2 22 341-362 1-22 (129)
337 cd02021 GntK Gluconate kinase 95.2 0.018 3.9E-07 54.9 3.6 22 341-362 2-23 (150)
338 PLN03210 Resistant to P. syrin 95.2 0.13 2.8E-06 65.4 12.2 49 304-363 184-232 (1153)
339 PF13479 AAA_24: AAA domain 95.1 0.046 9.9E-07 55.9 6.6 21 338-358 3-23 (213)
340 TIGR01359 UMP_CMP_kin_fam UMP- 95.1 0.019 4E-07 56.6 3.6 32 340-376 1-32 (183)
341 PRK13949 shikimate kinase; Pro 95.0 0.021 4.6E-07 56.4 3.7 31 340-373 3-33 (169)
342 PRK05541 adenylylsulfate kinas 95.0 0.03 6.4E-07 55.1 4.7 39 337-375 6-44 (176)
343 cd02019 NK Nucleoside/nucleoti 95.0 0.033 7.2E-07 46.7 4.3 22 341-362 2-23 (69)
344 cd02020 CMPK Cytidine monophos 95.0 0.023 4.9E-07 53.4 3.7 30 341-373 2-31 (147)
345 PRK13948 shikimate kinase; Pro 95.0 0.028 6E-07 56.5 4.5 34 337-373 9-42 (182)
346 PRK13833 conjugal transfer pro 95.0 0.12 2.6E-06 56.6 9.6 93 340-444 146-240 (323)
347 COG0703 AroK Shikimate kinase 94.9 0.019 4.2E-07 57.1 3.1 31 340-373 4-34 (172)
348 COG1373 Predicted ATPase (AAA+ 94.9 0.1 2.2E-06 58.7 9.2 81 340-444 39-121 (398)
349 PHA01747 putative ATP-dependen 94.9 0.08 1.7E-06 58.4 8.0 106 336-467 188-301 (425)
350 cd00227 CPT Chloramphenicol (C 94.9 0.024 5.2E-07 55.8 3.7 33 340-375 4-36 (175)
351 PF01583 APS_kinase: Adenylyls 94.8 0.033 7.2E-07 54.6 4.5 38 339-376 3-40 (156)
352 PF02562 PhoH: PhoH-like prote 94.8 0.087 1.9E-06 54.0 7.6 24 340-363 21-44 (205)
353 cd02028 UMPK_like Uridine mono 94.8 0.098 2.1E-06 52.1 7.7 36 341-376 2-37 (179)
354 TIGR03819 heli_sec_ATPase heli 94.8 0.21 4.6E-06 55.0 11.0 99 339-444 179-278 (340)
355 PRK03731 aroL shikimate kinase 94.7 0.034 7.3E-07 54.3 4.2 31 340-373 4-34 (171)
356 PRK14532 adenylate kinase; Pro 94.7 0.03 6.5E-07 55.6 3.9 31 340-375 2-32 (188)
357 PRK06762 hypothetical protein; 94.7 0.04 8.6E-07 53.5 4.6 24 339-362 3-26 (166)
358 PRK06547 hypothetical protein; 94.7 0.036 7.8E-07 55.1 4.4 25 338-362 15-39 (172)
359 TIGR00150 HI0065_YjeE ATPase, 94.7 0.056 1.2E-06 51.6 5.5 24 339-362 23-46 (133)
360 TIGR01448 recD_rel helicase, p 94.7 0.13 2.8E-06 62.1 9.8 92 340-442 340-442 (720)
361 PRK06067 flagellar accessory p 94.7 0.059 1.3E-06 55.6 6.0 37 339-375 26-62 (234)
362 PRK14530 adenylate kinase; Pro 94.5 0.037 8E-07 56.4 4.2 23 340-362 5-27 (215)
363 COG0563 Adk Adenylate kinase a 94.5 0.03 6.5E-07 56.0 3.4 31 340-375 2-32 (178)
364 PF04851 ResIII: Type III rest 94.5 0.058 1.2E-06 52.1 5.3 45 308-364 7-51 (184)
365 PRK05480 uridine/cytidine kina 94.5 0.048 1E-06 55.2 4.8 37 337-375 5-41 (209)
366 cd01428 ADK Adenylate kinase ( 94.5 0.036 7.8E-07 54.9 3.8 30 341-375 2-31 (194)
367 PRK05057 aroK shikimate kinase 94.5 0.039 8.4E-07 54.6 4.0 32 340-374 6-37 (172)
368 PF09848 DUF2075: Uncharacteri 94.4 0.12 2.6E-06 56.9 8.0 23 340-362 3-25 (352)
369 cd00267 ABC_ATPase ABC (ATP-bi 94.4 0.14 3E-06 49.3 7.6 98 339-442 26-125 (157)
370 PRK13764 ATPase; Provisional 94.3 0.18 3.9E-06 59.4 9.7 26 340-365 259-284 (602)
371 cd03222 ABC_RNaseL_inhibitor T 94.3 0.14 3E-06 51.2 7.5 89 339-442 26-116 (177)
372 cd02027 APSK Adenosine 5'-phos 94.2 0.047 1E-06 52.7 4.0 36 340-375 1-36 (149)
373 cd03216 ABC_Carb_Monos_I This 94.2 0.12 2.6E-06 50.4 6.9 99 339-442 27-127 (163)
374 cd02023 UMPK Uridine monophosp 94.2 0.049 1.1E-06 54.6 4.2 22 341-362 2-23 (198)
375 PRK08233 hypothetical protein; 94.2 0.057 1.2E-06 52.7 4.6 35 339-375 4-38 (182)
376 COG4608 AppF ABC-type oligopep 94.2 0.084 1.8E-06 55.9 6.0 100 340-442 41-154 (268)
377 PRK00889 adenylylsulfate kinas 94.2 0.069 1.5E-06 52.4 5.1 37 339-375 5-41 (175)
378 PF06048 DUF927: Domain of unk 94.2 0.23 4.9E-06 53.3 9.4 115 295-444 156-270 (286)
379 PF01745 IPT: Isopentenyl tran 94.2 0.054 1.2E-06 55.7 4.3 33 340-375 3-35 (233)
380 PLN02200 adenylate kinase fami 94.1 0.06 1.3E-06 56.1 4.8 36 336-376 41-76 (234)
381 PRK12726 flagellar biosynthesi 94.1 0.35 7.6E-06 54.1 10.7 100 337-440 205-311 (407)
382 cd03115 SRP The signal recogni 94.0 0.065 1.4E-06 52.5 4.5 37 340-376 2-38 (173)
383 PRK07667 uridine kinase; Provi 94.0 0.11 2.5E-06 52.2 6.4 38 339-376 18-55 (193)
384 PRK14531 adenylate kinase; Pro 94.0 0.055 1.2E-06 53.8 4.0 31 340-375 4-34 (183)
385 PRK02496 adk adenylate kinase; 94.0 0.055 1.2E-06 53.6 4.0 23 340-362 3-25 (184)
386 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.0 0.16 3.5E-06 48.6 7.1 87 339-442 27-115 (144)
387 cd01121 Sms Sms (bacterial rad 94.0 0.093 2E-06 58.5 6.1 84 339-428 83-170 (372)
388 PTZ00088 adenylate kinase 1; P 94.0 0.064 1.4E-06 55.8 4.5 33 339-376 7-39 (229)
389 TIGR03574 selen_PSTK L-seryl-t 93.9 0.054 1.2E-06 56.5 4.0 34 341-374 2-35 (249)
390 PRK13946 shikimate kinase; Pro 93.9 0.053 1.1E-06 54.0 3.7 32 339-373 11-42 (184)
391 COG1485 Predicted ATPase [Gene 93.9 0.19 4.1E-06 55.2 8.0 150 296-471 13-175 (367)
392 PF01443 Viral_helicase1: Vira 93.8 0.11 2.3E-06 53.0 5.7 26 416-441 62-87 (234)
393 TIGR01360 aden_kin_iso1 adenyl 93.7 0.062 1.3E-06 52.8 3.8 23 340-362 5-27 (188)
394 TIGR02322 phosphon_PhnN phosph 93.7 0.051 1.1E-06 53.4 3.1 24 340-363 3-26 (179)
395 PRK09270 nucleoside triphospha 93.7 0.14 2.9E-06 52.9 6.3 28 337-364 32-59 (229)
396 PRK14723 flhF flagellar biosyn 93.7 0.26 5.7E-06 59.4 9.5 134 291-430 140-277 (767)
397 COG1643 HrpA HrpA-like helicas 93.6 0.29 6.3E-06 59.7 9.9 86 340-429 67-175 (845)
398 TIGR00235 udk uridine kinase. 93.6 0.083 1.8E-06 53.6 4.5 26 338-363 6-31 (207)
399 PLN02165 adenylate isopentenyl 93.5 0.068 1.5E-06 58.5 4.0 24 339-362 44-67 (334)
400 PRK14528 adenylate kinase; Pro 93.5 0.078 1.7E-06 53.1 4.2 23 340-362 3-25 (186)
401 PF00485 PRK: Phosphoribulokin 93.5 0.091 2E-06 52.7 4.7 24 340-363 1-24 (194)
402 PF00448 SRP54: SRP54-type pro 93.5 0.086 1.9E-06 53.5 4.5 118 339-470 2-129 (196)
403 PRK06995 flhF flagellar biosyn 93.5 0.19 4E-06 57.9 7.6 24 339-362 257-280 (484)
404 TIGR02768 TraA_Ti Ti-type conj 93.4 0.37 7.9E-06 58.5 10.3 91 340-441 370-464 (744)
405 PHA02624 large T antigen; Prov 93.4 0.15 3.3E-06 59.6 6.7 34 339-375 432-465 (647)
406 COG2805 PilT Tfp pilus assembl 93.4 0.27 5.9E-06 53.0 8.0 100 337-446 124-226 (353)
407 PRK00091 miaA tRNA delta(2)-is 93.4 0.084 1.8E-06 57.3 4.4 34 339-375 5-38 (307)
408 TIGR00554 panK_bact pantothena 93.4 0.33 7.1E-06 52.4 8.8 27 337-363 61-87 (290)
409 cd03243 ABC_MutS_homologs The 93.4 0.34 7.4E-06 48.9 8.5 24 339-362 30-53 (202)
410 COG1102 Cmk Cytidylate kinase 93.3 0.084 1.8E-06 52.1 3.8 29 340-371 2-30 (179)
411 PRK10078 ribose 1,5-bisphospho 93.3 0.069 1.5E-06 53.2 3.4 23 340-362 4-26 (186)
412 PF13245 AAA_19: Part of AAA d 93.3 0.1 2.2E-06 45.0 3.8 23 340-362 12-35 (76)
413 PRK04220 2-phosphoglycerate ki 93.3 0.18 3.8E-06 54.6 6.5 26 337-362 91-116 (301)
414 PF13086 AAA_11: AAA domain; P 93.2 0.11 2.4E-06 52.1 4.6 23 340-362 19-41 (236)
415 PRK12727 flagellar biosynthesi 93.1 0.39 8.4E-06 55.8 9.3 90 338-431 350-443 (559)
416 TIGR01351 adk adenylate kinase 93.1 0.083 1.8E-06 53.7 3.6 30 341-375 2-31 (210)
417 PRK00279 adk adenylate kinase; 92.9 0.1 2.2E-06 53.2 4.0 31 340-375 2-32 (215)
418 cd02025 PanK Pantothenate kina 92.9 0.1 2.3E-06 53.7 4.0 23 341-363 2-24 (220)
419 cd03283 ABC_MutS-like MutS-lik 92.9 0.34 7.3E-06 49.2 7.6 23 340-362 27-49 (199)
420 cd01672 TMPK Thymidine monopho 92.9 0.11 2.3E-06 51.2 4.0 24 340-363 2-25 (200)
421 KOG1968 Replication factor C, 92.8 0.097 2.1E-06 63.9 4.2 90 340-441 359-456 (871)
422 cd03281 ABC_MSH5_euk MutS5 hom 92.8 0.33 7.1E-06 49.8 7.5 23 339-361 30-52 (213)
423 cd03223 ABCD_peroxisomal_ALDP 92.8 0.4 8.7E-06 46.9 7.8 101 339-442 28-136 (166)
424 PRK11823 DNA repair protein Ra 92.8 0.16 3.6E-06 57.9 5.8 84 339-428 81-168 (446)
425 TIGR01613 primase_Cterm phage/ 92.8 0.5 1.1E-05 50.9 9.3 133 301-466 46-181 (304)
426 TIGR02237 recomb_radB DNA repa 92.8 0.15 3.1E-06 51.5 4.8 37 339-375 13-49 (209)
427 PRK04182 cytidylate kinase; Pr 92.7 0.093 2E-06 51.1 3.3 23 340-362 2-24 (180)
428 COG3267 ExeA Type II secretory 92.7 0.45 9.7E-06 50.2 8.3 74 592-677 185-258 (269)
429 PRK10875 recD exonuclease V su 92.7 0.82 1.8E-05 54.3 11.5 28 416-443 265-292 (615)
430 PRK05537 bifunctional sulfate 92.6 0.34 7.4E-06 56.9 8.3 75 295-376 355-431 (568)
431 PLN02840 tRNA dimethylallyltra 92.6 0.12 2.6E-06 58.3 4.3 35 338-375 21-55 (421)
432 PRK14527 adenylate kinase; Pro 92.6 0.11 2.3E-06 52.0 3.6 24 339-362 7-30 (191)
433 cd03246 ABCC_Protease_Secretio 92.6 0.41 8.8E-06 47.0 7.6 101 340-442 30-141 (173)
434 KOG0922 DEAH-box RNA helicase 92.6 0.54 1.2E-05 55.2 9.6 97 340-441 68-190 (674)
435 TIGR01447 recD exodeoxyribonuc 92.6 0.32 7E-06 57.4 7.9 27 416-442 259-285 (586)
436 PRK00300 gmk guanylate kinase; 92.5 0.1 2.2E-06 52.4 3.3 24 339-362 6-29 (205)
437 TIGR00455 apsK adenylylsulfate 92.4 0.17 3.7E-06 50.1 4.7 39 337-375 17-55 (184)
438 PRK13975 thymidylate kinase; P 92.3 0.11 2.3E-06 51.8 3.1 23 340-362 4-26 (196)
439 TIGR00174 miaA tRNA isopenteny 92.3 0.12 2.6E-06 55.6 3.6 32 341-375 2-33 (287)
440 COG0324 MiaA tRNA delta(2)-iso 92.2 0.15 3.2E-06 55.3 4.3 34 339-375 4-37 (308)
441 PRK05439 pantothenate kinase; 92.2 0.22 4.9E-06 54.1 5.7 26 337-362 85-110 (311)
442 PF13555 AAA_29: P-loop contai 92.2 0.17 3.7E-06 42.0 3.7 27 340-366 25-51 (62)
443 COG4088 Predicted nucleotide k 92.2 0.11 2.4E-06 53.2 3.0 25 340-364 3-27 (261)
444 PF00406 ADK: Adenylate kinase 92.2 0.096 2.1E-06 50.2 2.5 28 343-375 1-28 (151)
445 TIGR02173 cyt_kin_arch cytidyl 92.1 0.13 2.8E-06 49.7 3.4 23 340-362 2-24 (171)
446 PRK04040 adenylate kinase; Pro 92.1 0.19 4.1E-06 50.6 4.5 24 339-362 3-26 (188)
447 cd01128 rho_factor Transcripti 92.0 0.48 1E-05 50.0 7.7 25 339-363 17-41 (249)
448 cd03227 ABC_Class2 ABC-type Cl 92.0 0.67 1.4E-05 45.2 8.3 99 339-441 22-125 (162)
449 PLN02199 shikimate kinase 92.0 0.33 7.1E-06 52.5 6.5 31 340-373 104-134 (303)
450 TIGR03263 guanyl_kin guanylate 92.0 0.1 2.2E-06 51.2 2.5 23 340-362 3-25 (180)
451 PRK14729 miaA tRNA delta(2)-is 91.9 0.17 3.8E-06 54.7 4.3 22 340-361 6-27 (300)
452 PRK14721 flhF flagellar biosyn 91.9 1.6 3.6E-05 49.4 12.2 24 338-361 191-214 (420)
453 PRK10646 ADP-binding protein; 91.8 0.3 6.6E-06 47.8 5.5 42 310-362 11-52 (153)
454 PF02367 UPF0079: Uncharacteri 91.8 0.32 6.9E-06 45.9 5.5 25 338-362 15-39 (123)
455 PLN02674 adenylate kinase 91.8 0.16 3.4E-06 53.5 3.8 33 339-376 32-64 (244)
456 PRK09361 radB DNA repair and r 91.8 0.23 4.9E-06 50.8 4.9 37 339-375 24-60 (225)
457 PRK15453 phosphoribulokinase; 91.8 0.24 5.1E-06 53.2 5.1 39 338-376 5-43 (290)
458 cd00071 GMPK Guanosine monopho 91.7 0.13 2.8E-06 49.0 2.8 22 341-362 2-23 (137)
459 KOG3354 Gluconate kinase [Carb 91.6 0.2 4.4E-06 49.1 4.0 26 337-362 11-36 (191)
460 PRK05986 cob(I)alamin adenolsy 91.6 0.39 8.5E-06 48.7 6.2 36 338-373 22-57 (191)
461 cd01394 radB RadB. The archaea 91.6 0.25 5.3E-06 50.2 4.9 37 339-375 20-56 (218)
462 PRK12337 2-phosphoglycerate ki 91.6 0.52 1.1E-05 53.8 7.8 36 337-374 254-289 (475)
463 PRK13889 conjugal transfer rel 91.6 0.47 1E-05 59.1 8.0 91 340-441 364-458 (988)
464 KOG1051 Chaperone HSP104 and r 91.4 0.017 3.7E-07 70.1 -4.4 111 556-668 762-874 (898)
465 PRK14526 adenylate kinase; Pro 91.4 0.19 4.2E-06 51.6 3.9 23 340-362 2-24 (211)
466 PF08433 KTI12: Chromatin asso 91.3 0.27 5.9E-06 52.4 5.0 34 340-373 3-36 (270)
467 PF12846 AAA_10: AAA-like doma 91.2 0.22 4.8E-06 52.1 4.3 36 340-375 3-38 (304)
468 COG1936 Predicted nucleotide k 91.2 0.18 3.8E-06 50.3 3.2 22 340-362 2-23 (180)
469 PF13337 Lon_2: Putative ATP-d 91.2 0.28 6.2E-06 55.6 5.2 101 338-467 208-311 (457)
470 PHA02530 pseT polynucleotide k 91.2 0.14 3.1E-06 54.6 2.8 32 340-375 4-35 (300)
471 PF03029 ATP_bind_1: Conserved 91.1 0.2 4.4E-06 52.4 3.7 33 343-375 1-33 (238)
472 cd03285 ABC_MSH2_euk MutS2 hom 91.1 0.84 1.8E-05 47.2 8.3 24 339-362 31-54 (222)
473 TIGR00041 DTMP_kinase thymidyl 91.1 0.23 5.1E-06 49.3 4.0 24 340-363 5-28 (195)
474 COG1341 Predicted GTPase or GT 91.0 0.34 7.3E-06 54.0 5.5 53 337-395 72-124 (398)
475 cd01983 Fer4_NifH The Fer4_Nif 90.9 0.3 6.4E-06 41.7 4.1 33 341-373 2-34 (99)
476 cd03284 ABC_MutS1 MutS1 homolo 90.9 1.2 2.7E-05 45.7 9.2 24 339-362 31-54 (216)
477 PRK09825 idnK D-gluconate kina 90.8 0.22 4.7E-06 49.6 3.5 23 340-362 5-27 (176)
478 PF13476 AAA_23: AAA domain; P 90.8 0.25 5.3E-06 48.5 3.9 28 338-365 19-46 (202)
479 COG3842 PotA ABC-type spermidi 90.8 0.16 3.4E-06 56.2 2.7 23 340-362 33-55 (352)
480 cd03280 ABC_MutS2 MutS2 homolo 90.8 0.68 1.5E-05 46.7 7.1 21 340-360 30-50 (200)
481 PRK12338 hypothetical protein; 90.8 0.21 4.6E-06 54.4 3.6 26 337-362 3-28 (319)
482 PF06414 Zeta_toxin: Zeta toxi 90.7 0.28 6.1E-06 49.4 4.3 38 337-376 14-51 (199)
483 cd02024 NRK1 Nicotinamide ribo 90.6 0.23 5E-06 50.1 3.5 22 341-362 2-23 (187)
484 PRK13826 Dtr system oriT relax 90.6 0.55 1.2E-05 58.9 7.4 92 339-441 398-493 (1102)
485 PRK14738 gmk guanylate kinase; 90.6 0.23 4.9E-06 50.6 3.5 24 338-361 13-36 (206)
486 PF13521 AAA_28: AAA domain; P 90.6 0.19 4.1E-06 48.8 2.7 21 341-361 2-22 (163)
487 cd02034 CooC The accessory pro 90.5 0.34 7.5E-06 45.0 4.3 35 341-375 2-36 (116)
488 PRK06731 flhF flagellar biosyn 90.5 0.58 1.3E-05 50.0 6.6 99 339-441 76-181 (270)
489 PRK01184 hypothetical protein; 90.5 0.26 5.6E-06 48.7 3.7 22 340-362 3-24 (184)
490 TIGR00416 sms DNA repair prote 90.5 0.28 6E-06 56.2 4.4 84 339-428 95-182 (454)
491 PRK14737 gmk guanylate kinase; 90.5 0.23 4.9E-06 50.0 3.3 25 338-362 4-28 (186)
492 COG0572 Udk Uridine kinase [Nu 90.5 0.33 7.2E-06 50.1 4.5 37 338-374 8-44 (218)
493 TIGR00991 3a0901s02IAP34 GTP-b 90.4 3.4 7.4E-05 45.1 12.4 23 337-359 37-59 (313)
494 PRK00698 tmk thymidylate kinas 90.4 0.22 4.8E-06 49.6 3.2 25 339-363 4-28 (205)
495 PF05609 LAP1C: Lamina-associa 90.4 2.8 6E-05 48.0 12.0 147 291-466 246-396 (465)
496 PLN02748 tRNA dimethylallyltra 90.3 0.26 5.6E-06 56.5 3.9 32 339-373 23-54 (468)
497 PRK13768 GTPase; Provisional 90.2 0.34 7.3E-06 51.0 4.5 37 340-376 4-40 (253)
498 PRK09435 membrane ATPase/prote 90.0 1.1 2.4E-05 49.2 8.4 39 337-375 55-95 (332)
499 PF14516 AAA_35: AAA-like doma 90.0 2 4.3E-05 47.1 10.4 39 339-377 32-70 (331)
500 smart00534 MUTSac ATPase domai 90.0 1.1 2.3E-05 44.7 7.7 22 341-362 2-23 (185)
No 1
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-54 Score=500.12 Aligned_cols=480 Identities=25% Similarity=0.320 Sum_probs=338.1
Q ss_pred CccccCccCCCCcCCCCCcCC-CCCCcchhhhhhhHHHHHHHHhhcCCCCccccccccCCcchhhhhccCCCCccccccc
Q 005186 3 SFVPFGGFFPTPSEFKNPLGG-LCQNVSRCQQCSEKCEQEIIASSKGGFTASIADQCQSVLPSWLQMAEPDSNKALDLKT 81 (710)
Q Consensus 3 sfvpfggf~~~~~~~~~~~~~-~~~~~~~c~~c~~~~e~e~a~~~~~~~~~~~~~~~~~~lp~~l~~~~~~~~~~~~~~~ 81 (710)
.+|++|+||+..+.+..+..+ .+....||+.|..+||+|+++..+. +...||+|||+.+....+
T Consensus 366 ~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~---------~~~~lP~wL~~~~~~~~~------ 430 (898)
T KOG1051|consen 366 YEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKS---------QAESLPPWLQNLERVDIK------ 430 (898)
T ss_pred hccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhh---------hhhhCCHHHHhhhhhhhh------
Confidence 589999999999999999876 4788999999999999999999984 467899999997644322
Q ss_pred cchhhhhhHHH---hhhHHHHHHhhhccCCCCCCCCCCccceeecccccccccCCCCCCCCCccCCCcccccccCccCCC
Q 005186 82 KEDGLALRSKI---TKKWDDICQSLHRTQSLQVGSQFPTVVGFQFLQDKKENANNSGSSTNASVNGGSYVNVYSGIPIDS 158 (710)
Q Consensus 82 ~~d~~~~~~~~---~kkw~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (710)
+...+ +|||| +++|++....++.. .. +. .+ | ++.+
T Consensus 431 ------~~~e~~~L~kk~d---~~~h~r~~~~~~~~------~~--~~--------~~-----------~--l~~~---- 468 (898)
T KOG1051|consen 431 ------LQDEISELQKKWN---QALHKRPSLESLAP------SK--PT--------QQ-----------P--LSAS---- 468 (898)
T ss_pred ------hHHHHHHHHHhhh---hhhccccccccccc------cc--cc--------cc-----------c--chhh----
Confidence 33344 99999 99999876332111 00 00 00 0 1111
Q ss_pred cccccCCcccccccccccccchhhhhhhhcccccccCCCCCCCCccCCCCC-CCCCCCCCCCCCCcccccccccccCCCC
Q 005186 159 ENVSASRSVFPFHTVSGAKNDSLLSKLREKSSNADLDSGGSRSPCCLSNSS-VDDGSRKSPTPVTSVTTDLGLGLLGIGS 237 (710)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~tdl~lg~~~~~~ 237 (710)
. ...-++ .++.. ..+.++-..+ ..... .| ...++.|||+.|. +.
T Consensus 469 ---~-------------~~~~s~----~~~l~---------~~~~~~~~~~~~~k~~--r~-~d~~~~~~l~~~~---~p 513 (898)
T KOG1051|consen 469 ---V-------------DSERSV----IEELK---------LKKNSLDRNSLLAKAH--RP-NDYTRETDLRYGR---IP 513 (898)
T ss_pred ---h-------------ccchhH----Hhhhc---------cccCCcccchhhhccc--CC-CCcchhhhccccc---cc
Confidence 0 000000 00000 0000110011 11111 23 5557999999999 32
Q ss_pred CCCCCCCCCCCcccccccccccccccCCccCCCcccccccCC-CCCC-C-CcccccchHhHHHHHHHhcCcccccHHHHH
Q 005186 238 APTSNEPKEPISKDLTERSQELSGCCSATVNGSISNQLAQSS-SSSC-P-DLNCQFDLSNWKTLFRALTEKIDWQDEAIS 314 (710)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~-~~~~-~-~~~~~~d~~~lk~L~k~L~~~ViGQdeAi~ 314 (710)
..... .+.++.+ +...++++. ...| + +...+.+.++|+.|++.|.++|+||++|+.
T Consensus 514 --~~~~~------------------~~~~~~~-~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~ 572 (898)
T KOG1051|consen 514 --DELSE------------------KSNDNQG-GESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVA 572 (898)
T ss_pred --hhhhh------------------hcccccC-CccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHH
Confidence 11110 1222222 222222222 1111 1 233345788999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccccc
Q 005186 315 VISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGG 394 (710)
Q Consensus 315 ~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G 394 (710)
+|+.+|.+++.|+.++ +++.||+|+||+|||||+||++||+.+||+...||++||++ |.+.. .+.|
T Consensus 573 aIa~AI~~sr~gl~~~-----~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse----~~evs-----klig 638 (898)
T KOG1051|consen 573 AIAAAIRRSRAGLKDP-----NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSE----FQEVS-----KLIG 638 (898)
T ss_pred HHHHHHHhhhcccCCC-----CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhh----hhhhh-----hccC
Confidence 9999999999998876 47899999999999999999999999999999999999997 44422 4456
Q ss_pred ccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccccccc
Q 005186 395 DSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 474 (710)
Q Consensus 395 ~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~ 474 (710)
.+++|+|++..|+|+++++++||+|||||||||||+++++.|+|+||+|+++|++||+|+|+|+|||||+|.++..+.
T Consensus 639 sp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~-- 716 (898)
T KOG1051|consen 639 SPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIA-- 716 (898)
T ss_pred CCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhh--
Confidence 666667777779999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred cccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCCChHHHHHhhccC
Q 005186 475 SEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRS 554 (710)
Q Consensus 475 ~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~ 554 (710)
+... .++++....+ +...+..+.+++...
T Consensus 717 ---~~~~-~~~~l~~~~~-----------------------------------------------~~~~~~~~k~~v~~~ 745 (898)
T KOG1051|consen 717 ---NDAS-LEEKLLDMDE-----------------------------------------------KRGSYRLKKVQVSDA 745 (898)
T ss_pred ---cccc-cccccccchh-----------------------------------------------hhhhhhhhhhhhhhh
Confidence 1111 1211110000 000001111111110
Q ss_pred CCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceE
Q 005186 555 PTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLL 634 (710)
Q Consensus 555 s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~L 634 (710)
.+. .+...|++||++|+|.+++|+|||.+++.++....+.....+.-+.++.+
T Consensus 746 ~~~---------------------------~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~~~~ 798 (898)
T KOG1051|consen 746 VRI---------------------------YNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEERELLL 798 (898)
T ss_pred hhc---------------------------ccccccChHHhcccceeeeecccchhhHhhhhhhHHHHHHHHhhhhHHHH
Confidence 000 01148999999999999999999999887777655544433332335778
Q ss_pred EeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEEEec
Q 005186 635 EIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKLVACE 690 (710)
Q Consensus 635 eId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~~~~~~~v~Lv~~~ 690 (710)
.+++.+.+.++..+|+.. |+|.|+++|++.|...|+.... ..+....++++..-.
T Consensus 799 ~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l-~ei~~~~~~~i~~~~ 854 (898)
T KOG1051|consen 799 LVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL-GEVEDGLTERILVAD 854 (898)
T ss_pred HHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhe-eeecCCceEEEEecc
Confidence 999999999999999998 9999999999999999999999 888888998777644
No 2
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-52 Score=481.27 Aligned_cols=294 Identities=22% Similarity=0.293 Sum_probs=252.9
Q ss_pred cchHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcce
Q 005186 290 FDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 369 (710)
Q Consensus 290 ~d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~f 369 (710)
.|.+.+.+|++.|.++|+||++|+.+|+.+|++.++|+..++ ||.++|||.||+|||||+||++||+.|||++..+
T Consensus 477 ~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~----rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~al 552 (786)
T COG0542 477 DEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPN----RPIGSFLFLGPTGVGKTELAKALAEALFGDEQAL 552 (786)
T ss_pred hhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCC----CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccc
Confidence 399999999999999999999999999999999999999996 6889999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCcc-----ccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 370 ICADLCPQDGEMNNPPKFY-----HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 370 I~iD~s~~~~e~~~~~sl~-----~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
|++|||+ |++.|+++ ||||+||++| |.|+++++++||+||+|||||||||+|+|.|||+||+|+
T Consensus 553 iR~DMSE----y~EkHsVSrLIGaPPGYVGyeeG-------G~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGr 621 (786)
T COG0542 553 IRIDMSE----YMEKHSVSRLIGAPPGYVGYEEG-------GQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGR 621 (786)
T ss_pred eeechHH----HHHHHHHHHHhCCCCCCceeccc-------cchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCe
Confidence 9999997 78888876 8888888876 789999999999999999999999999999999999999
Q ss_pred ccCCCCeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhh
Q 005186 445 LPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQ 524 (710)
Q Consensus 445 l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (710)
++|++||+|||+|+|||||||+|+..+. +...+.
T Consensus 622 LTD~~Gr~VdFrNtiIImTSN~Gs~~i~-----~~~~~~----------------------------------------- 655 (786)
T COG0542 622 LTDGQGRTVDFRNTIIIMTSNAGSEEIL-----RDADGD----------------------------------------- 655 (786)
T ss_pred eecCCCCEEecceeEEEEecccchHHHH-----hhcccc-----------------------------------------
Confidence 9999999999999999999999876532 000000
Q ss_pred hhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeec
Q 005186 525 KLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAF 604 (710)
Q Consensus 525 ~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF 604 (710)
....+..+... +..++.+.|+|||+||||+||+|
T Consensus 656 ---------------~~~~~~~~~~~-------------------------------v~~~l~~~F~PEFLNRid~II~F 689 (786)
T COG0542 656 ---------------DFADKEALKEA-------------------------------VMEELKKHFRPEFLNRIDEIIPF 689 (786)
T ss_pred ---------------ccchhhhHHHH-------------------------------HHHHHHhhCCHHHHhhcccEEec
Confidence 00000111111 12345669999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcCcCCCCE
Q 005186 605 KAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSI 683 (710)
Q Consensus 605 ~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~~~~~~~ 683 (710)
+||+.+.+.+|+...+.+...+...+++.|+++++|.++|++.+|.+. |+|+|++.|++-+.++|++.++.+....+..
T Consensus 690 ~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~g~~~~~~~ 769 (786)
T COG0542 690 NPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDGGT 769 (786)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHhcccCCCcE
Confidence 999999887777655554443333469999999999999999999998 9999999999999999999999999998888
Q ss_pred EEEEEec
Q 005186 684 VKLVACE 690 (710)
Q Consensus 684 v~Lv~~~ 690 (710)
|++....
T Consensus 770 v~v~~~~ 776 (786)
T COG0542 770 VKVDVDD 776 (786)
T ss_pred EEEEecC
Confidence 8666554
No 3
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=9.1e-41 Score=398.60 Aligned_cols=304 Identities=19% Similarity=0.281 Sum_probs=246.9
Q ss_pred cchHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcce
Q 005186 290 FDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 369 (710)
Q Consensus 290 ~d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~f 369 (710)
-+.+++..|++.|.++|+||++|++.|+.+|.+++.|+..++ ||.+++||+||+|||||++|++||+.+||+..++
T Consensus 495 ~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~----~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~ 570 (821)
T CHL00095 495 SESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPN----RPIASFLFSGPTGVGKTELTKALASYFFGSEDAM 570 (821)
T ss_pred hHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCC----CCceEEEEECCCCCcHHHHHHHHHHHhcCCccce
Confidence 378889999999999999999999999999999999988775 6778999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCcc-----ccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 370 ICADLCPQDGEMNNPPKFY-----HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 370 I~iD~s~~~~e~~~~~sl~-----~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
+++||++ |.+.+.+. |++|+||+++ +.++++++++|++|||||||||||+++++.|+++||+|+
T Consensus 571 ~~~d~s~----~~~~~~~~~l~g~~~gyvg~~~~-------~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~ 639 (821)
T CHL00095 571 IRLDMSE----YMEKHTVSKLIGSPPGYVGYNEG-------GQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGR 639 (821)
T ss_pred EEEEchh----ccccccHHHhcCCCCcccCcCcc-------chHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCc
Confidence 9999997 55445442 5556665543 689999999999999999999999999999999999999
Q ss_pred ccCCCCeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhh
Q 005186 445 LPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQ 524 (710)
Q Consensus 445 l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (710)
++|+.|+.|+|+|+|||||||.|+..+... ....+|..+.
T Consensus 640 ~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~--~~~~gf~~~~-------------------------------------- 679 (821)
T CHL00095 640 LTDSKGRTIDFKNTLIIMTSNLGSKVIETN--SGGLGFELSE-------------------------------------- 679 (821)
T ss_pred eecCCCcEEecCceEEEEeCCcchHHHHhh--ccccCCcccc--------------------------------------
Confidence 999999999999999999999987543200 0223332000
Q ss_pred hhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeec
Q 005186 525 KLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAF 604 (710)
Q Consensus 525 ~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF 604 (710)
.. .....+..+.+.+ ..++.+.|+|||++|+|.+|+|
T Consensus 680 -----------~~-~~~~~~~~~~~~~-------------------------------~~~~~~~f~peflnRid~ii~F 716 (821)
T CHL00095 680 -----------NQ-LSEKQYKRLSNLV-------------------------------NEELKQFFRPEFLNRLDEIIVF 716 (821)
T ss_pred -----------cc-cccccHHHHHHHH-------------------------------HHHHHHhcCHHHhccCCeEEEe
Confidence 00 0000011222222 1224558999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcCcCCCCE
Q 005186 605 KAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSI 683 (710)
Q Consensus 605 ~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~~~~~~~ 683 (710)
+||+.+++.+++...+.+...+....++.|+++++|+++|+..+|++. |+|+|+++|++.+.++|++.++.+....+.+
T Consensus 717 ~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~~~~~~g~~ 796 (821)
T CHL00095 717 RQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDI 796 (821)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHhCccCCCCE
Confidence 999999998888776665433333358999999999999999999988 9999999999999999999999999999999
Q ss_pred EEEEEecC
Q 005186 684 VKLVACEG 691 (710)
Q Consensus 684 v~Lv~~~~ 691 (710)
|++...++
T Consensus 797 v~~~~~~~ 804 (821)
T CHL00095 797 IIVDVNDE 804 (821)
T ss_pred EEEEEeCC
Confidence 97766443
No 4
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=1.3e-39 Score=388.11 Aligned_cols=291 Identities=22% Similarity=0.307 Sum_probs=238.4
Q ss_pred cchHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcce
Q 005186 290 FDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 369 (710)
Q Consensus 290 ~d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~f 369 (710)
-+.+++..|++.|.++|+||++|++.|+.+|.++++|+.+++ ||.++|||+||+|||||++|++||+.+|+....+
T Consensus 552 ~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~----~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~ 627 (852)
T TIGR03345 552 DEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPR----KPLGVFLLVGPSGVGKTETALALAELLYGGEQNL 627 (852)
T ss_pred hHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCC----CCceEEEEECCCCCCHHHHHHHHHHHHhCCCcce
Confidence 378899999999999999999999999999999999988775 6788999999999999999999999999998999
Q ss_pred EEecCCCCCCCCCCCCCcc-----ccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 370 ICADLCPQDGEMNNPPKFY-----HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 370 I~iD~s~~~~e~~~~~sl~-----~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
+++||++ |.+.+++. |++|+||+++ +.|+++++++|++||+||||||||+.+++.|+++|++|.
T Consensus 628 ~~~dmse----~~~~~~~~~l~g~~~gyvg~~~~-------g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~ 696 (852)
T TIGR03345 628 ITINMSE----FQEAHTVSRLKGSPPGYVGYGEG-------GVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGV 696 (852)
T ss_pred EEEeHHH----hhhhhhhccccCCCCCccccccc-------chHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcce
Confidence 9999997 44444432 5666666554 689999999999999999999999999999999999999
Q ss_pred ccCCCCeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhh
Q 005186 445 LPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQ 524 (710)
Q Consensus 445 l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (710)
++|+.|+.|+|+|+|||||||+|+..+... ..+.
T Consensus 697 l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~-----------------------~~~~----------------------- 730 (852)
T TIGR03345 697 MEDGEGREIDFKNTVILLTSNAGSDLIMAL-----------------------CADP----------------------- 730 (852)
T ss_pred eecCCCcEEeccccEEEEeCCCchHHHHHh-----------------------ccCc-----------------------
Confidence 999999999999999999999976542100 0000
Q ss_pred hhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeec
Q 005186 525 KLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAF 604 (710)
Q Consensus 525 ~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF 604 (710)
++. . + ...+.+.+ ..++...|.|||++|++ +|+|
T Consensus 731 ----~~~----~---~---~~~~~~~~-------------------------------~~~~~~~f~PEflnRi~-iI~F 764 (852)
T TIGR03345 731 ----ETA----P---D---PEALLEAL-------------------------------RPELLKVFKPAFLGRMT-VIPY 764 (852)
T ss_pred ----ccC----c---c---hHHHHHHH-------------------------------HHHHHHhccHHHhccee-EEEe
Confidence 000 0 0 01111111 12244589999999997 9999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhcCC-CceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcCcCCCC
Q 005186 605 KAFNFDALAEKILKDINASFRKTVGS-ECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANS 682 (710)
Q Consensus 605 ~PLD~d~Laeiil~~L~~~~~~~~g~-~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~~~~~~ 682 (710)
+||+.+++.+++...+.+...+.... ++.|+++++|+++|+..+|.+. |+|+|+++|++.+.++|+++++.+...+..
T Consensus 765 ~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l~~~~~~~~ 844 (852)
T TIGR03345 765 LPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILERLAAGEP 844 (852)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHhChhcCCC
Confidence 99999999888877776544433222 7899999999999999999887 999999999999999999999999888766
Q ss_pred EEEEE
Q 005186 683 IVKLV 687 (710)
Q Consensus 683 ~v~Lv 687 (710)
..+|.
T Consensus 845 ~~~~~ 849 (852)
T TIGR03345 845 IERIH 849 (852)
T ss_pred eeEEE
Confidence 66554
No 5
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-39 Score=377.00 Aligned_cols=291 Identities=20% Similarity=0.256 Sum_probs=238.1
Q ss_pred cchHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcce
Q 005186 290 FDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 369 (710)
Q Consensus 290 ~d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~f 369 (710)
.|.+.+..|++.|.++|+||++|++.|..+|..++.|+..++ ||.+++||+||+|||||++|++||+.+ +.+|
T Consensus 444 ~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~----kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~~~ 516 (758)
T PRK11034 444 SDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEH----KPVGSFLFAGPTGVGKTEVTVQLSKAL---GIEL 516 (758)
T ss_pred hHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCC----CCcceEEEECCCCCCHHHHHHHHHHHh---CCCc
Confidence 477899999999999999999999999999999999887764 577899999999999999999999998 5789
Q ss_pred EEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCC
Q 005186 370 ICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 370 I~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~ 449 (710)
+++||+. |.+.+.+ ..++|...+|.|....+.++++++++|++|||||||||||+++|+.|+++|++|.++|..
T Consensus 517 i~id~se----~~~~~~~--~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~ 590 (758)
T PRK11034 517 LRFDMSE----YMERHTV--SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNN 590 (758)
T ss_pred EEeechh----hcccccH--HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCC
Confidence 9999997 4444433 244555555555444478999999999999999999999999999999999999999999
Q ss_pred CeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhh
Q 005186 450 GREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNK 529 (710)
Q Consensus 450 Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K 529 (710)
|+.++|+|+|||+|||.|...+. ....+|.
T Consensus 591 g~~vd~rn~iiI~TsN~g~~~~~----~~~~g~~---------------------------------------------- 620 (758)
T PRK11034 591 GRKADFRNVVLVMTTNAGVRETE----RKSIGLI---------------------------------------------- 620 (758)
T ss_pred CceecCCCcEEEEeCCcCHHHHh----hcccCcc----------------------------------------------
Confidence 99999999999999998754321 0111110
Q ss_pred hhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCH
Q 005186 530 RKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNF 609 (710)
Q Consensus 530 Rk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~ 609 (710)
.. +. .. +...+..+.|.|||++|||.+|+|+||+.
T Consensus 621 -------~~-~~--~~-----------------------------------~~~~~~~~~f~pefl~Rid~ii~f~~L~~ 655 (758)
T PRK11034 621 -------HQ-DN--ST-----------------------------------DAMEEIKKIFTPEFRNRLDNIIWFDHLST 655 (758)
T ss_pred -------cc-hh--hH-----------------------------------HHHHHHHHhcCHHHHccCCEEEEcCCCCH
Confidence 00 00 00 01123445899999999999999999999
Q ss_pred HHHHHHHHHHH---HHHHhhhcCCCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEE
Q 005186 610 DALAEKILKDI---NASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVK 685 (710)
Q Consensus 610 d~Laeiil~~L---~~~~~~~~g~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~~~~~~~v~ 685 (710)
+++.+++...+ .++++. .++.|+++++|+++|+..+|.+. |+|+|++.|++.+.++|++.++.+....+..++
T Consensus 656 ~~l~~I~~~~l~~~~~~l~~---~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~~~~~~~~~~~ 732 (758)
T PRK11034 656 DVIHQVVDKFIVELQAQLDQ---KGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVT 732 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHH---CCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHhCcccCCCEEE
Confidence 98877775544 444433 58999999999999999999998 999999999999999999999999999888987
Q ss_pred EEEecC
Q 005186 686 LVACEG 691 (710)
Q Consensus 686 Lv~~~~ 691 (710)
+...++
T Consensus 733 v~~~~~ 738 (758)
T PRK11034 733 VALDKE 738 (758)
T ss_pred EEEECC
Confidence 766544
No 6
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1.2e-38 Score=376.49 Aligned_cols=288 Identities=22% Similarity=0.262 Sum_probs=234.6
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
+..++..|++.|.++|+||++|++.|..++...+.|+..++ ||.++++|+||+|||||++|++||+.+ ..+++
T Consensus 441 ~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~----~p~~~~lf~Gp~GvGKT~lA~~la~~l---~~~~~ 513 (731)
T TIGR02639 441 DREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPN----KPVGSFLFTGPTGVGKTELAKQLAEAL---GVHLE 513 (731)
T ss_pred HHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCC----CCceeEEEECCCCccHHHHHHHHHHHh---cCCeE
Confidence 67899999999999999999999999999999999987764 577899999999999999999999998 57899
Q ss_pred EecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC
Q 005186 371 CADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG 450 (710)
Q Consensus 371 ~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G 450 (710)
++||++ |.+.+.+. .++|...+|.|....+.++++++++|++||||||||||++++++.|+++|++|+++|..|
T Consensus 514 ~~d~se----~~~~~~~~--~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g 587 (731)
T TIGR02639 514 RFDMSE----YMEKHTVS--RLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNG 587 (731)
T ss_pred EEeCch----hhhcccHH--HHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCC
Confidence 999997 44444432 233333333343334789999999999999999999999999999999999999999999
Q ss_pred eEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhh
Q 005186 451 REVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKR 530 (710)
Q Consensus 451 r~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KR 530 (710)
+.++|+|+|||+|||.|+..+. ....+|..+..
T Consensus 588 ~~vd~~~~iii~Tsn~g~~~~~----~~~~~f~~~~~------------------------------------------- 620 (731)
T TIGR02639 588 RKADFRNVILIMTSNAGASEMS----KPPIGFGSENV------------------------------------------- 620 (731)
T ss_pred cccCCCCCEEEECCCcchhhhh----hccCCcchhhh-------------------------------------------
Confidence 9999999999999999865421 01122321100
Q ss_pred hccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCHH
Q 005186 531 KLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFD 610 (710)
Q Consensus 531 k~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~d 610 (710)
... ...+..+.|.|||++|||.+|+|+||+.+
T Consensus 621 -----------------~~~-------------------------------~~~~~~~~f~pef~~Rid~Vi~F~pLs~e 652 (731)
T TIGR02639 621 -----------------ESK-------------------------------SDKAIKKLFSPEFRNRLDAIIHFNPLSEE 652 (731)
T ss_pred -----------------HHH-------------------------------HHHHHHhhcChHHHhcCCeEEEcCCCCHH
Confidence 000 01223448999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEE
Q 005186 611 ALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKL 686 (710)
Q Consensus 611 ~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~~~~~~~v~L 686 (710)
++.+++.+.+.+...+.-..++.|+++++++++|+..+|.+. |+|+|+++|++.+.++|++.++.+....+..+++
T Consensus 653 ~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~~~~~~~~~~~~ 729 (731)
T TIGR02639 653 VLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGSVKV 729 (731)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHhCcCCCCCEEEE
Confidence 998888777655333332357899999999999999999998 9999999999999999999999999888877754
No 7
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=2.2e-37 Score=370.70 Aligned_cols=289 Identities=20% Similarity=0.254 Sum_probs=237.1
Q ss_pred cchHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcce
Q 005186 290 FDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 369 (710)
Q Consensus 290 ~d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~f 369 (710)
.|.+++..|++.|.++|+||++|++.|..+|.+.++|+..++ ||.++++|+||+|||||++|++||+.++++..++
T Consensus 551 ~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~----~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~ 626 (852)
T TIGR03346 551 GEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPN----RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAM 626 (852)
T ss_pred HHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCC----CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcE
Confidence 488899999999999999999999999999999999888775 5778999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCcc-----ccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 370 ICADLCPQDGEMNNPPKFY-----HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 370 I~iD~s~~~~e~~~~~sl~-----~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
+++||+. |.+.+.+. +++|+||+++ +.++++++++|++|||||||||||+.+|+.|+++|++|+
T Consensus 627 i~~d~s~----~~~~~~~~~l~g~~~g~~g~~~~-------g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~ 695 (852)
T TIGR03346 627 VRIDMSE----YMEKHSVARLIGAPPGYVGYEEG-------GQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGR 695 (852)
T ss_pred EEEechh----hcccchHHHhcCCCCCccCcccc-------cHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCc
Confidence 9999997 33333322 5566666554 689999999999999999999999999999999999999
Q ss_pred ccCCCCeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhh
Q 005186 445 LPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQ 524 (710)
Q Consensus 445 l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (710)
++|+.|+.++|+|+|||||||.|+..+.-.. ...+
T Consensus 696 l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~----~~~~----------------------------------------- 730 (852)
T TIGR03346 696 LTDGQGRTVDFRNTVIIMTSNLGSQFIQELA----GGDD----------------------------------------- 730 (852)
T ss_pred eecCCCeEEecCCcEEEEeCCcchHhHhhhc----cccc-----------------------------------------
Confidence 9999999999999999999999775421000 0000
Q ss_pred hhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeec
Q 005186 525 KLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAF 604 (710)
Q Consensus 525 ~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF 604 (710)
+..+...+ .......|+|||++|||.+|+|
T Consensus 731 -------------------~~~~~~~~-------------------------------~~~~~~~F~pel~~Rid~IivF 760 (852)
T TIGR03346 731 -------------------YEEMREAV-------------------------------MEVLRAHFRPEFLNRIDEIVVF 760 (852)
T ss_pred -------------------HHHHHHHH-------------------------------HHHHHhhcCHHHhcCcCeEEec
Confidence 01111111 1122347999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcCcCCCCE
Q 005186 605 KAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSI 683 (710)
Q Consensus 605 ~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~~~~~~~ 683 (710)
+||+.+++.+++...+....++....++.++++++|+++|+.++|... |+|+|+++|++.+.++|++.++.++...+..
T Consensus 761 ~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~ 840 (852)
T TIGR03346 761 HPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVADGDT 840 (852)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCE
Confidence 999999877776655543222221247789999999999999999887 9999999999999999999999999988888
Q ss_pred EEEEE
Q 005186 684 VKLVA 688 (710)
Q Consensus 684 v~Lv~ 688 (710)
+++..
T Consensus 841 ~~~~~ 845 (852)
T TIGR03346 841 IVVDV 845 (852)
T ss_pred EEEEe
Confidence 86665
No 8
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=4.8e-36 Score=358.35 Aligned_cols=295 Identities=19% Similarity=0.304 Sum_probs=237.5
Q ss_pred cchHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcce
Q 005186 290 FDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 369 (710)
Q Consensus 290 ~d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~f 369 (710)
-+..++..|++.|+++|+||+.|+..|..+|.++++|+..++ +|.++++|+||+|||||++|++||+.+++...++
T Consensus 554 ~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~----~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~ 629 (857)
T PRK10865 554 SEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPN----RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAM 629 (857)
T ss_pred hHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCC----CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcE
Confidence 378899999999999999999999999999999999888774 5678999999999999999999999999988899
Q ss_pred EEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCC
Q 005186 370 ICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 370 I~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~ 449 (710)
+++||+.+ .+.+.+ ..++|..++|.|....+.++++++..|++||||||||+|++.+|+.|+++|++|+++|+.
T Consensus 630 i~id~se~----~~~~~~--~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~ 703 (857)
T PRK10865 630 VRIDMSEF----MEKHSV--SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQ 703 (857)
T ss_pred EEEEhHHh----hhhhhH--HHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCC
Confidence 99999973 333322 123444444444333367899999999999999999999999999999999999999999
Q ss_pred CeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhh
Q 005186 450 GREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNK 529 (710)
Q Consensus 450 Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K 529 (710)
|+.++|+|+|||+|||.+...+. + .|.+.
T Consensus 704 gr~vd~rn~iiI~TSN~g~~~~~-----~--~~~~~-------------------------------------------- 732 (857)
T PRK10865 704 GRTVDFRNTVVIMTSNLGSDLIQ-----E--RFGEL-------------------------------------------- 732 (857)
T ss_pred ceEEeecccEEEEeCCcchHHHH-----H--hcccc--------------------------------------------
Confidence 99999999999999998754321 0 01000
Q ss_pred hhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCH
Q 005186 530 RKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNF 609 (710)
Q Consensus 530 Rk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~ 609 (710)
.+..+...+. ......|.|||++|+|.+|+|+||+.
T Consensus 733 -------------~~~~~~~~~~-------------------------------~~~~~~f~PELlnRld~iivF~PL~~ 768 (857)
T PRK10865 733 -------------DYAHMKELVL-------------------------------GVVSHNFRPEFINRIDEVVVFHPLGE 768 (857)
T ss_pred -------------chHHHHHHHH-------------------------------HHHcccccHHHHHhCCeeEecCCCCH
Confidence 0000111110 11233799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Q 005186 610 DALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKLVA 688 (710)
Q Consensus 610 d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~~~~~~~v~Lv~ 688 (710)
+++.+++...+.+...+....++.++++++|+++|+.++|... |+|+|+++|++.+.++|++.++.+....++.|++..
T Consensus 769 edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL~g~~~~~~~~~~~~ 848 (857)
T PRK10865 769 QHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEV 848 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEE
Confidence 9987777666655333222246778999999999999999998 999999999999999999999999999999987765
Q ss_pred e
Q 005186 689 C 689 (710)
Q Consensus 689 ~ 689 (710)
.
T Consensus 849 ~ 849 (857)
T PRK10865 849 N 849 (857)
T ss_pred E
Confidence 4
No 9
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=6.1e-32 Score=297.88 Aligned_cols=289 Identities=18% Similarity=0.251 Sum_probs=207.4
Q ss_pred hHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCC-CCC----CCCCCeEEEEecCCCCchhHHHHHHHHHHcCCC
Q 005186 292 LSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDH-HGA----SPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK 366 (710)
Q Consensus 292 ~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~-~~~----~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~ 366 (710)
...+++|++.|.+.|+||++|++.++.++..++.++... ... ......++||.||+|+|||++|++||+.+ +
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~ 141 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---N 141 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---C
Confidence 557899999999999999999999999998776665431 000 01124699999999999999999999888 6
Q ss_pred cceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHH-------hCCCeEEEEeccccCCH---------
Q 005186 367 ENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL-------KKPLSVVYLENVDKADV--------- 430 (710)
Q Consensus 367 ~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~-------~~p~sVI~LDEIDKa~~--------- 430 (710)
.+|+.+|++.. .+++|+|++.+ +.+.+.+. ....+|||||||||+++
T Consensus 142 ~pf~~~da~~L----------~~~gyvG~d~e-------~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~ 204 (413)
T TIGR00382 142 VPFAIADATTL----------TEAGYVGEDVE-------NILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITR 204 (413)
T ss_pred CCeEEechhhc----------cccccccccHH-------HHHHHHHHhCcccHHhcccceEEecccchhchhhccccccc
Confidence 78888888742 23567776543 34444443 34457999999999997
Q ss_pred -----HHHHHHHhhHhCCcccC---CCCeEeecCceEEEEccCCCccccccccccccccch-HHHHHHHhhhhhhhhhhh
Q 005186 431 -----HVQNSLSKAIQTGKLPD---SYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFS-EEKIYRAKSRLTQILIEP 501 (710)
Q Consensus 431 -----~vqn~LLq~LE~G~l~d---~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~-eeki~~~k~~~l~~~i~~ 501 (710)
.+|+.||++|| |.+++ ..|+.++++++|+|+|||+++-- +..|. -++++..+ +
T Consensus 205 dvsg~~vq~~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~--------~Gaf~g~~~i~~~r-------~-- 266 (413)
T TIGR00382 205 DVSGEGVQQALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFIC--------GGAFVGLEKIIKKR-------T-- 266 (413)
T ss_pred cccchhHHHHHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeee--------cccccChHHHHHHH-------h--
Confidence 69999999995 98876 67899999999999999985421 12342 22222111 0
Q ss_pred hhhccccccccccccccccchhhhhhhhhhccCCCCCCCCCC--hHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCC
Q 005186 502 ALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD--TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDR 579 (710)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~--~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~ 579 (710)
. ++.+|+........ .....+++.
T Consensus 267 --------------------------~-~~~~gf~~~~~~~~~~~~~~~~~~~--------------------------- 292 (413)
T TIGR00382 267 --------------------------G-KSSIGFGAEVKKKSKEKADLLRQVE--------------------------- 292 (413)
T ss_pred --------------------------h-hccccccccccccchhhHHHHHHHH---------------------------
Confidence 0 00112111000000 001111110
Q ss_pred CCCccc-ccccchhHHhcCcceeeecCCCCHHHHHHHHHHH---HHHHHhhhcC-CCceEEeCHHHHHHHHHhcCCCC-C
Q 005186 580 NSDSSE-NTKSWLQDFFNQRVKIVAFKAFNFDALAEKILKD---INASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-S 653 (710)
Q Consensus 580 ~d~~~e-~~~~f~~efl~RiD~iVvF~PLD~d~Laeiil~~---L~~~~~~~~g-~~i~LeId~eale~La~~~~~~~-G 653 (710)
..+ ...+|+|||+||||.+++|+||+.++|.+|+... +.+++.+.+. .++.|+++++|+++|+..+|... |
T Consensus 293 ---~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~G 369 (413)
T TIGR00382 293 ---PEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTG 369 (413)
T ss_pred ---HHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCC
Confidence 011 2347999999999999999999999999888654 4455555443 68999999999999999999998 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 005186 654 NRVIEDWLEKVLVRGFLDAQEK 675 (710)
Q Consensus 654 aR~le~~IE~vl~~~L~el~~~ 675 (710)
||+|++.|++.+.+.+.++...
T Consensus 370 AR~Lr~iie~~l~~~m~e~p~~ 391 (413)
T TIGR00382 370 ARGLRSIVEGLLLDVMFDLPSL 391 (413)
T ss_pred chHHHHHHHHhhHHHHhhCCCC
Confidence 9999999999999999998654
No 10
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.97 E-value=3.7e-30 Score=284.77 Aligned_cols=291 Identities=20% Similarity=0.250 Sum_probs=203.5
Q ss_pred hHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCC---CCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc
Q 005186 292 LSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHG---ASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN 368 (710)
Q Consensus 292 ~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~---~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~ 368 (710)
...++++.+.|.+.|+||++|++.|+.++..+...+..... ....+..++||+||+|||||++|++||+.+ +.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~p 135 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVP 135 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCC
Confidence 56789999999999999999999999888665433322100 111245699999999999999999999988 789
Q ss_pred eEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHH-------HHhCCCeEEEEeccccCCH-----------
Q 005186 369 FICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWE-------LLKKPLSVVYLENVDKADV----------- 430 (710)
Q Consensus 369 fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~a-------l~~~p~sVI~LDEIDKa~~----------- 430 (710)
|+.+|++... +.+|+|.+.+ ..+... +.+.+++||||||||++++
T Consensus 136 f~~id~~~l~----------~~gyvG~d~e-------~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~ 198 (412)
T PRK05342 136 FAIADATTLT----------EAGYVGEDVE-------NILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDV 198 (412)
T ss_pred ceecchhhcc----------cCCcccchHH-------HHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCc
Confidence 9999998521 2356665433 222222 3456789999999999975
Q ss_pred ---HHHHHHHhhHhCCc--ccCCCCeEeecCceEEEEccCCCccccccccccccccch-HHHHHHHhhhhhhhhhhhhhh
Q 005186 431 ---HVQNSLSKAIQTGK--LPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFS-EEKIYRAKSRLTQILIEPALV 504 (710)
Q Consensus 431 ---~vqn~LLq~LE~G~--l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~-eeki~~~k~~~l~~~i~~~~~ 504 (710)
.+|+.||++||.+. +++..|+..++.+.++|+|+|+.+-- +..|. -++++..+-
T Consensus 199 s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~--------~Gaf~g~~~~~~~r~------------ 258 (412)
T PRK05342 199 SGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFIC--------GGAFDGLEKIIKQRL------------ 258 (412)
T ss_pred ccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeee--------cccccCcHHHHHHHH------------
Confidence 49999999998443 35678899999999999999985421 11232 122221110
Q ss_pred ccccccccccccccccchhhhhhhhhhccCCCCCCCC----CChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCC
Q 005186 505 NRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQ----HDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRN 580 (710)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~----~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~ 580 (710)
.+ +.+|++..... .......+++. | ++
T Consensus 259 -----------------------~~-~~~gf~~~~~~~~~~~~~~~~~~~~~-----------~----~d---------- 289 (412)
T PRK05342 259 -----------------------GK-KGIGFGAEVKSKKEKRTEGELLKQVE-----------P----ED---------- 289 (412)
T ss_pred -----------------------hh-cccCCccccccccccchhHHHHHhcC-----------H----HH----------
Confidence 00 11121110000 00011111110 0 00
Q ss_pred CCcccccccchhHHhcCcceeeecCCCCHHHHHHHHHH---HHHHHHhhhcC-CCceEEeCHHHHHHHHHhcCCCC-ChH
Q 005186 581 SDSSENTKSWLQDFFNQRVKIVAFKAFNFDALAEKILK---DINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-SNR 655 (710)
Q Consensus 581 d~~~e~~~~f~~efl~RiD~iVvF~PLD~d~Laeiil~---~L~~~~~~~~g-~~i~LeId~eale~La~~~~~~~-GaR 655 (710)
....+|+|||+||||.+|+|+||+.++|.+|+.. .+.+++.+.+. .++.|+++++|+++|++.+|... |||
T Consensus 290 ----L~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR 365 (412)
T PRK05342 290 ----LIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGAR 365 (412)
T ss_pred ----HHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCc
Confidence 1233699999999999999999999999888864 34444444443 68999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 005186 656 VIEDWLEKVLVRGFLDAQEK 675 (710)
Q Consensus 656 ~le~~IE~vl~~~L~el~~~ 675 (710)
+|++.|++++.+.+.++...
T Consensus 366 ~Lrriie~~l~~~~~~~p~~ 385 (412)
T PRK05342 366 GLRSILEEILLDVMFELPSR 385 (412)
T ss_pred hHHHHHHHHhHHHHHhcccc
Confidence 99999999999999988764
No 11
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.4e-28 Score=251.54 Aligned_cols=293 Identities=20% Similarity=0.261 Sum_probs=215.9
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCC--CCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHH--GASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN 368 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~--~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~ 368 (710)
+....+++.+.|++.||||+.|++.++.+++.+...+.... .-..-...++||.||+|+|||.||+.||+.| +.|
T Consensus 48 ~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVP 124 (408)
T COG1219 48 ELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVP 124 (408)
T ss_pred cCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCC
Confidence 56678999999999999999999999999987754333221 1011234599999999999999999999999 899
Q ss_pred eEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHH-------hCCCeEEEEeccccCC------------
Q 005186 369 FICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL-------KKPLSVVYLENVDKAD------------ 429 (710)
Q Consensus 369 fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~-------~~p~sVI~LDEIDKa~------------ 429 (710)
|...|+.. +...||+|-+.. ..+...+. ++..+||+||||||+.
T Consensus 125 FaiADATt----------LTEAGYVGEDVE-------NillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDV 187 (408)
T COG1219 125 FAIADATT----------LTEAGYVGEDVE-------NILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDV 187 (408)
T ss_pred eeeccccc----------hhhccccchhHH-------HHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCccccc
Confidence 99988885 334577776654 34444443 4457899999999975
Q ss_pred --HHHHHHHHhhHhCC--cccCCCCeEeecCceEEEEccCCCccccccccccccccch-HHHHHHHhhhhhhhhhhhhhh
Q 005186 430 --VHVQNSLSKAIQTG--KLPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFS-EEKIYRAKSRLTQILIEPALV 504 (710)
Q Consensus 430 --~~vqn~LLq~LE~G--~l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~-eeki~~~k~~~l~~~i~~~~~ 504 (710)
..||++||++||.- .++...||+..-...|-|-|+|+.+ . -+..|. -++|...+..
T Consensus 188 SGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILF-----I---cgGAF~GlekiI~~R~~----------- 248 (408)
T COG1219 188 SGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILF-----I---CGGAFAGLEKIIKKRLG----------- 248 (408)
T ss_pred CchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeE-----E---eccccccHHHHHHHhcc-----------
Confidence 37999999999843 2445678998888899999999754 1 123453 4555443321
Q ss_pred ccccccccccccccccchhhhhhhhhhccCCCCCCCC----CChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCC
Q 005186 505 NRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQ----HDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRN 580 (710)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~----~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~ 580 (710)
.+.+|++..... ....+..+++ |-||.
T Consensus 249 -------------------------~~~iGF~a~~~~~~~~~~~~~~l~~v---------------epeDL--------- 279 (408)
T COG1219 249 -------------------------KKGIGFGAEVKSKSKKKEEGELLKQV---------------EPEDL--------- 279 (408)
T ss_pred -------------------------CCcccccccccchhhhhhHHHHHHhc---------------ChHHH---------
Confidence 112233222110 0011122222 11222
Q ss_pred CCcccccccchhHHhcCcceeeecCCCCHHHHHHHH---HHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhcCCCC-ChH
Q 005186 581 SDSSENTKSWLQDFFNQRVKIVAFKAFNFDALAEKI---LKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-SNR 655 (710)
Q Consensus 581 d~~~e~~~~f~~efl~RiD~iVvF~PLD~d~Laeii---l~~L~~~~~~~~g-~~i~LeId~eale~La~~~~~~~-GaR 655 (710)
..-+++|||++|+..+..+.+||.++|.+|+ .+.|.++|++.+. .++.|+|+++|+..|+..|.... |||
T Consensus 280 -----vkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGAR 354 (408)
T COG1219 280 -----VKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGAR 354 (408)
T ss_pred -----HHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchh
Confidence 2348999999999999999999999999999 4788888888876 78999999999999999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 005186 656 VIEDWLEKVLVRGFLDAQEKY 676 (710)
Q Consensus 656 ~le~~IE~vl~~~L~el~~~~ 676 (710)
+|+..||++|.+.+.++...-
T Consensus 355 GLRsI~E~~lld~MfelPs~~ 375 (408)
T COG1219 355 GLRSIIEELLLDVMFELPSLE 375 (408)
T ss_pred HHHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999876543
No 12
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.8e-26 Score=245.18 Aligned_cols=313 Identities=18% Similarity=0.208 Sum_probs=206.3
Q ss_pred CCCCCCcccccchHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCC--------------C---------------
Q 005186 280 SSSCPDLNCQFDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHED--------------H--------------- 330 (710)
Q Consensus 280 ~~~~~~~~~~~d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~--------------~--------------- 330 (710)
+.+|+... +....+++.+.|++.|+||+.|++.|+.+++.+...+.. .
T Consensus 124 ~~gg~~~k---~~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~ 200 (564)
T KOG0745|consen 124 RDGGFQLK---PPPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISES 200 (564)
T ss_pred cccccccC---CCCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCccccccccc
Confidence 44554433 677899999999999999999999999888765322111 0
Q ss_pred -------CC----CCCC-------CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccc
Q 005186 331 -------HG----ASPR-------RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVV 392 (710)
Q Consensus 331 -------~~----~~~r-------~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~ 392 (710)
.+ +..+ ...++||.||+|+|||.||+.||+.| +.||...||... ...||
T Consensus 201 ~a~~~~~~r~~~~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtL----------TQAGY 267 (564)
T KOG0745|consen 201 NAQWPNNQRQIAKALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTL----------TQAGY 267 (564)
T ss_pred ccccccccchhcccccccccceeeecccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccch----------hhccc
Confidence 00 0000 12489999999999999999999999 999999999963 23577
Q ss_pred ccccccccccchhhHHHHHH-------HhCCCeEEEEeccccCC--------------HHHHHHHHhhHhCCcccCC--C
Q 005186 393 GGDSVQFRGKTLADYVAWEL-------LKKPLSVVYLENVDKAD--------------VHVQNSLSKAIQTGKLPDS--Y 449 (710)
Q Consensus 393 ~G~~~~f~G~t~~~~L~~al-------~~~p~sVI~LDEIDKa~--------------~~vqn~LLq~LE~G~l~d~--~ 449 (710)
+|.+.. ..|...+ .++..+|||||||||+. ..||+.||+++| |.+..- .
T Consensus 268 VGeDVE-------svi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK 339 (564)
T KOG0745|consen 268 VGEDVE-------SVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEK 339 (564)
T ss_pred ccccHH-------HHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhc-ccEEcccCC
Confidence 777654 3333333 44567899999999975 379999999998 443321 2
Q ss_pred C-eEeecCceEEEEccCCCccccccccccccccc-hHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhh
Q 005186 450 G-REVSVSNAIFVTASSFVEDARILPSEMKDCKF-SEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLL 527 (710)
Q Consensus 450 G-r~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f-~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (710)
| +...-...|.|-|+|+.+-. +..| +-||++..+... -.++.++.. + -
T Consensus 340 ~~~~~~rgd~vqiDTtnILFia--------sGAF~~Ldk~I~rR~~d--~slGFg~~s-----------------~---~ 389 (564)
T KOG0745|consen 340 GSRRKPRGDTVQIDTTNILFIA--------SGAFVGLDKIISRRLDD--KSLGFGAPS-----------------S---K 389 (564)
T ss_pred CCCCCCCCCeEEEeccceEEEe--------cccccchHHHHHHhhcc--hhcccCCCC-----------------C---c
Confidence 2 22233346677777765421 2345 345654322211 122222111 0 0
Q ss_pred hhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCC
Q 005186 528 NKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAF 607 (710)
Q Consensus 528 ~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PL 607 (710)
..|......... ...+.++-. .|+. -|-.| -...+++|||++|+..+|.|.+|
T Consensus 390 ~vr~~~~~~s~~----~~~~~~~~~-----lL~~----~~~~D--------------LisfGmIPEfVGRfPVlVplh~L 442 (564)
T KOG0745|consen 390 GVRANMATKSGV----ENDAEKRDE-----LLEK----VESGD--------------LISFGMIPEFVGRFPVLVPLHSL 442 (564)
T ss_pred cchhhcccccCc----chhHHHHHH-----HHhh----ccccc--------------hhhhcCcHHHhcccceEeecccc
Confidence 111111110000 011111110 0000 00011 13448999999999999999999
Q ss_pred CHHHHHHHH---HHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHH
Q 005186 608 NFDALAEKI---LKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQ 673 (710)
Q Consensus 608 D~d~Laeii---l~~L~~~~~~~~g-~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~ 673 (710)
|.+.|.+++ .+.|-++++++++ .+++|.|+++|++.|+..|.... |||+|+..+|++|..++.++.
T Consensus 443 ~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevP 513 (564)
T KOG0745|consen 443 DEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVP 513 (564)
T ss_pred CHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccCC
Confidence 999999998 5778888888876 78999999999999999999888 999999999999988877754
No 13
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.90 E-value=2.6e-24 Score=212.13 Aligned_cols=117 Identities=34% Similarity=0.492 Sum_probs=93.2
Q ss_pred CCCeEEEEecCCCCchhHHHHHHHHHHc-CCCcceEEecCCCCCCCCCC----CCCccccccccccccccccchhhHHHH
Q 005186 336 RRDIWFNFTGPDLCGKRKIAIALAEIIY-GGKENFICADLCPQDGEMNN----PPKFYHQVVGGDSVQFRGKTLADYVAW 410 (710)
Q Consensus 336 r~~~~lLf~GP~GvGKT~LAraLAe~L~-gs~~~fI~iD~s~~~~e~~~----~~sl~~~~~~G~~~~f~G~t~~~~L~~ 410 (710)
||.++++|+||+|||||+||++||+.++ +...+++++||+.+ .. .+.+. .+.|...+
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~----~~~~~~~~~~~--~l~~~~~~------------ 62 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY----SEGDDVESSVS--KLLGSPPG------------ 62 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH----CSHHHCSCHCH--HHHHHTTC------------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc----cccchHHhhhh--hhhhcccc------------
Confidence 4678999999999999999999999999 89999999999973 32 11111 11111111
Q ss_pred HHHhCCCeEEEEeccccCCH-----------HHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 411 ELLKKPLSVVYLENVDKADV-----------HVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 411 al~~~p~sVI~LDEIDKa~~-----------~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
.+...+.+|||||||||+++ .||+.||++||+|++++.+|+.|+++|+|||||+|.+...
T Consensus 63 ~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~ 133 (171)
T PF07724_consen 63 YVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEE 133 (171)
T ss_dssp HHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHH
T ss_pred eeeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccch
Confidence 11222345999999999999 9999999999999999999999999999999999986543
No 14
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.88 E-value=1e-21 Score=215.14 Aligned_cols=85 Identities=13% Similarity=0.219 Sum_probs=73.8
Q ss_pred chhHHhcCcceeeecCCCCHHHHHHHHH---HHHHHHHhhhcC-CCceEEeCHHHHHHHHHhcCC-----CC-ChHHHHH
Q 005186 590 WLQDFFNQRVKIVAFKAFNFDALAEKIL---KDINASFRKTVG-SECLLEIDRKVMEQLLAAAYL-----SE-SNRVIED 659 (710)
Q Consensus 590 f~~efl~RiD~iVvF~PLD~d~Laeiil---~~L~~~~~~~~g-~~i~LeId~eale~La~~~~~-----~~-GaR~le~ 659 (710)
++|||++|+..++.+.||+.++|.+|+. +.+-+++...+. .++.|+|+++|++.|+..|+. .. |||.|+.
T Consensus 318 lIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrt 397 (443)
T PRK05201 318 LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHT 397 (443)
T ss_pred ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 6899999999999999999999999983 456666666654 699999999999999999886 34 9999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005186 660 WLEKVLVRGFLDAQE 674 (710)
Q Consensus 660 ~IE~vl~~~L~el~~ 674 (710)
.+|++|.....++.-
T Consensus 398 I~E~~L~d~~Fe~p~ 412 (443)
T PRK05201 398 VMEKLLEDISFEAPD 412 (443)
T ss_pred HHHHHHHHHhccCCC
Confidence 999999988887654
No 15
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.87 E-value=5.8e-21 Score=209.10 Aligned_cols=85 Identities=13% Similarity=0.229 Sum_probs=74.1
Q ss_pred chhHHhcCcceeeecCCCCHHHHHHHH---HHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhcCC-----CC-ChHHHHH
Q 005186 590 WLQDFFNQRVKIVAFKAFNFDALAEKI---LKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYL-----SE-SNRVIED 659 (710)
Q Consensus 590 f~~efl~RiD~iVvF~PLD~d~Laeii---l~~L~~~~~~~~g-~~i~LeId~eale~La~~~~~-----~~-GaR~le~ 659 (710)
++|||.+|+..++.+.||+.++|.+|+ .+.|-+++...+. .++.|+|+++|++.|+..|+. .+ |||.|+.
T Consensus 316 lIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrt 395 (441)
T TIGR00390 316 LIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHT 395 (441)
T ss_pred ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 689999999999999999999999998 3456666776664 689999999999999999886 34 9999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005186 660 WLEKVLVRGFLDAQE 674 (710)
Q Consensus 660 ~IE~vl~~~L~el~~ 674 (710)
.+|++|.....++.-
T Consensus 396 ilE~~l~d~~fe~p~ 410 (441)
T TIGR00390 396 VLERLLEDISFEAPD 410 (441)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999988888643
No 16
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.86 E-value=1.5e-21 Score=214.06 Aligned_cols=214 Identities=15% Similarity=0.185 Sum_probs=171.9
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.|||++.|+..+.+.|..... .+..+|++|++||||..+|++|++...+.+.|||.+||+...
T Consensus 224 ~iIG~S~am~~ll~~i~~VA~-----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP------ 286 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVVAK-----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP------ 286 (550)
T ss_pred cceecCHHHHHHHHHHHHHhc-----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc------
Confidence 799999999999999986643 467999999999999999999999999999999999999643
Q ss_pred CCccccccccccccccccchhhHHHHHHHh-------CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC---eEee
Q 005186 385 PKFYHQVVGGDSVQFRGKTLADYVAWELLK-------KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG---REVS 454 (710)
Q Consensus 385 ~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-------~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G---r~vd 454 (710)
.++...++|||+.| .+++++.. +..+.+|||||..++..+|..||++|++|.|..-.| .+||
T Consensus 287 esLlESELFGHeKG--------AFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVD 358 (550)
T COG3604 287 ESLLESELFGHEKG--------AFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVD 358 (550)
T ss_pred hHHHHHHHhccccc--------ccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEE
Confidence 35667789999886 34444443 346799999999999999999999999999987655 3455
Q ss_pred cCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccC
Q 005186 455 VSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIG 534 (710)
Q Consensus 455 ~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~ 534 (710)
++ ||++||.--
T Consensus 359 VR---iIAATNRDL------------------------------------------------------------------ 369 (550)
T COG3604 359 VR---VIAATNRDL------------------------------------------------------------------ 369 (550)
T ss_pred EE---EEeccchhH------------------------------------------------------------------
Confidence 44 999999510
Q ss_pred CCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCC------C
Q 005186 535 RNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAF------N 608 (710)
Q Consensus 535 ~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PL------D 608 (710)
.+.+. + -.|+.||++|++.+-++.|. |
T Consensus 370 -------------~~~V~--------------~--------------------G~FRaDLYyRLsV~Pl~lPPLRER~~D 402 (550)
T COG3604 370 -------------EEMVR--------------D--------------------GEFRADLYYRLSVFPLELPPLRERPED 402 (550)
T ss_pred -------------HHHHH--------------c--------------------CcchhhhhhcccccccCCCCcccCCcc
Confidence 00110 0 17999999999988776665 6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 609 FDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 609 ~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
..-|++.++++++.++.+ ..+.++++|++.|.. |.++|+ |.|++.|++...
T Consensus 403 IplLA~~Fle~~~~~~gr-----~~l~ls~~Al~~L~~--y~wPGNVRELen~veRavl 454 (550)
T COG3604 403 IPLLAGYFLEKFRRRLGR-----AILSLSAEALELLSS--YEWPGNVRELENVVERAVL 454 (550)
T ss_pred HHHHHHHHHHHHHHhcCC-----cccccCHHHHHHHHc--CCCCCcHHHHHHHHHHHHH
Confidence 777899999998877643 258999999999998 566766 999999998863
No 17
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.86 E-value=2.5e-20 Score=222.15 Aligned_cols=243 Identities=15% Similarity=0.203 Sum_probs=180.4
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
+..+++.+++.|.+.++||+++++.|...+...+.... . ....++|+||||||||++|++||+.+ ..+|+
T Consensus 307 ~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~-~------~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~ 376 (775)
T TIGR00763 307 ENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGK-M------KGPILCLVGPPGVGKTSLGKSIAKAL---NRKFV 376 (775)
T ss_pred chhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-C------CCceEEEECCCCCCHHHHHHHHHHHh---cCCeE
Confidence 56678999999999999999999999987765543111 1 11279999999999999999999999 67899
Q ss_pred EecCCCCCCCCCCCCCcc--ccccccccccccccchhhHHHHHHHh--CCCeEEEEeccccCCHHH----HHHHHhhHhC
Q 005186 371 CADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLK--KPLSVVYLENVDKADVHV----QNSLSKAIQT 442 (710)
Q Consensus 371 ~iD~s~~~~e~~~~~sl~--~~~~~G~~~~f~G~t~~~~L~~al~~--~p~sVI~LDEIDKa~~~v----qn~LLq~LE~ 442 (710)
+++++... ....+. ...|+|...+ .+.+++.. ....||||||||++++.. .+.|+++|+.
T Consensus 377 ~i~~~~~~----~~~~i~g~~~~~~g~~~g--------~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~ 444 (775)
T TIGR00763 377 RFSLGGVR----DEAEIRGHRRTYVGAMPG--------RIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDP 444 (775)
T ss_pred EEeCCCcc----cHHHHcCCCCceeCCCCc--------hHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCH
Confidence 99887421 111111 1234443332 23333332 233599999999997644 5899999984
Q ss_pred ---CcccCCC-CeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhcccccccccccccc
Q 005186 443 ---GKLPDSY-GREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETS 518 (710)
Q Consensus 443 ---G~l~d~~-Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~ 518 (710)
+.|.|.. +..+++++++||+|||...
T Consensus 445 ~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~-------------------------------------------------- 474 (775)
T TIGR00763 445 EQNNAFSDHYLDVPFDLSKVIFIATANSID-------------------------------------------------- 474 (775)
T ss_pred HhcCccccccCCceeccCCEEEEEecCCch--------------------------------------------------
Confidence 6788765 6789999999999999410
Q ss_pred ccchhhhhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCc
Q 005186 519 EGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQR 598 (710)
Q Consensus 519 ~~~~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~Ri 598 (710)
.+.+.|++|+
T Consensus 475 ----------------------------------------------------------------------~i~~~L~~R~ 484 (775)
T TIGR00763 475 ----------------------------------------------------------------------TIPRPLLDRM 484 (775)
T ss_pred ----------------------------------------------------------------------hCCHHHhCCe
Confidence 2345788999
Q ss_pred ceeeecCCCCHHHHHHHHHHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhc
Q 005186 599 VKIVAFKAFNFDALAEKILKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKY 676 (710)
Q Consensus 599 D~iVvF~PLD~d~Laeiil~~L~~~~~~~~g-~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~ 676 (710)
+ +|.|.+++.+++.+++.+.+..+..+..| ....+.++++++++|+.. |..+ |+|.|++.|++++.....++...+
T Consensus 485 ~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~-~~~e~g~R~l~r~i~~~~~~~~~~~~~~~ 562 (775)
T TIGR00763 485 E-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKY-YTREAGVRNLERQIEKICRKAAVKLVEQG 562 (775)
T ss_pred e-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHh-cChhcCChHHHHHHHHHHHHHHHHHHhcc
Confidence 5 88999999999999888777554444322 234689999999999994 8887 999999999999988877776544
Q ss_pred C
Q 005186 677 N 677 (710)
Q Consensus 677 ~ 677 (710)
+
T Consensus 563 ~ 563 (775)
T TIGR00763 563 E 563 (775)
T ss_pred C
Confidence 3
No 18
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.85 E-value=3e-21 Score=214.26 Aligned_cols=222 Identities=17% Similarity=0.205 Sum_probs=173.9
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
.+.|+|.+.++..+.+.+++.. +.+..+|+.|++||||..+|++||+..-+.+.|||.+||+..+.
T Consensus 244 f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe--- 309 (560)
T COG3829 244 FDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE--- 309 (560)
T ss_pred hhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH---
Confidence 3579999988877766665543 35779999999999999999999999999999999999997432
Q ss_pred CCCCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC---eEeecCce
Q 005186 383 NPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG---REVSVSNA 458 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G---r~vd~~n~ 458 (710)
.++..++|||..| |.|....|. .+.+..+.++.||||||..|+...|..||++|+++.|..-.| ..||++
T Consensus 310 ---~LlESELFGye~GAFTGA~~~GK-~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVR-- 383 (560)
T COG3829 310 ---TLLESELFGYEKGAFTGASKGGK-PGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVR-- 383 (560)
T ss_pred ---HHHHHHHhCcCCccccccccCCC-CcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEE--
Confidence 4667789999987 555432221 233444567899999999999999999999999999887555 456666
Q ss_pred EEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCC
Q 005186 459 IFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDN 538 (710)
Q Consensus 459 I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~ 538 (710)
||++||..-. ++ | .
T Consensus 384 -IIAATN~nL~----------------~~-----------i----------------------------~---------- 397 (560)
T COG3829 384 -IIAATNRNLE----------------KM-----------I----------------------------A---------- 397 (560)
T ss_pred -EEeccCcCHH----------------HH-----------H----------------------------h----------
Confidence 9999995210 00 0 0
Q ss_pred CCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCC-C-----CHHHH
Q 005186 539 PQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKA-F-----NFDAL 612 (710)
Q Consensus 539 ~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~P-L-----D~d~L 612 (710)
...|+.||++|++.+-++-| | |...|
T Consensus 398 ------------------------------------------------~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L 429 (560)
T COG3829 398 ------------------------------------------------EGTFREDLYYRLNVIPITIPPLRERKEDIPLL 429 (560)
T ss_pred ------------------------------------------------cCcchhhheeeeceeeecCCCcccCcchHHHH
Confidence 01799999999999866655 4 77788
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHH
Q 005186 613 AEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVL 665 (710)
Q Consensus 613 aeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl 665 (710)
++.+++.++.++.+.+ -.|+++|+..|++ |.|+|+ |.|++.||+.+
T Consensus 430 ~~~Fl~k~s~~~~~~v-----~~ls~~a~~~L~~--y~WPGNVRELeNviER~v 476 (560)
T COG3829 430 AEYFLDKFSRRYGRNV-----KGLSPDALALLLR--YDWPGNVRELENVIERAV 476 (560)
T ss_pred HHHHHHHHHHHcCCCc-----ccCCHHHHHHHHh--CCCCchHHHHHHHHHHHH
Confidence 9999999988886542 3489999999999 567766 99999999987
No 19
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.85 E-value=5.9e-21 Score=211.95 Aligned_cols=224 Identities=17% Similarity=0.201 Sum_probs=176.7
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
...++|++.++..+.+.|.+... .+.++|+.|++||||..+|++|++..-+.+.|||.+||+....
T Consensus 140 ~~~liG~S~am~~l~~~i~kvA~-----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~--- 205 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKVAP-----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE--- 205 (464)
T ss_pred cCCceecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH---
Confidence 45799999999999999987653 4679999999999999999999999988899999999997543
Q ss_pred CCCCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEE
Q 005186 383 NPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFV 461 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~I 461 (710)
+++..++|||+.| |.|... .-.+.+..+..+++|||||..|+.++|..||++|++|.|..-.|++.---++.||
T Consensus 206 ---~l~ESELFGhekGAFTGA~~--~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiI 280 (464)
T COG2204 206 ---NLLESELFGHEKGAFTGAIT--RRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRII 280 (464)
T ss_pred ---HHHHHHhhcccccCcCCccc--ccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEE
Confidence 3445689999987 666542 2234566678899999999999999999999999999998876633222345599
Q ss_pred EccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCC
Q 005186 462 TASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQ 541 (710)
Q Consensus 462 lTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~ 541 (710)
.+||..-.
T Consensus 281 aaT~~dL~------------------------------------------------------------------------ 288 (464)
T COG2204 281 AATNRDLE------------------------------------------------------------------------ 288 (464)
T ss_pred eecCcCHH------------------------------------------------------------------------
Confidence 99995110
Q ss_pred CChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCC-C-----CHHHHHHH
Q 005186 542 HDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKA-F-----NFDALAEK 615 (710)
Q Consensus 542 ~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~P-L-----D~d~Laei 615 (710)
+.+. ...|++||++|+..+-+.-| | |...|++.
T Consensus 289 -------~~v~----------------------------------~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~h 327 (464)
T COG2204 289 -------EEVA----------------------------------AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEH 327 (464)
T ss_pred -------HHHH----------------------------------cCCcHHHHHhhhccceecCCcccccchhHHHHHHH
Confidence 0000 01799999999998755555 4 67778999
Q ss_pred HHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHH
Q 005186 616 ILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVL 665 (710)
Q Consensus 616 il~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl 665 (710)
+++++...+... ...|+++|++.|.. |.|+|+ |.|++.||+.+
T Consensus 328 fl~~~~~~~~~~-----~~~~s~~a~~~L~~--y~WPGNVREL~N~ver~~ 371 (464)
T COG2204 328 FLKRFAAELGRP-----PKGFSPEALAALLA--YDWPGNVRELENVVERAV 371 (464)
T ss_pred HHHHHHHHcCCC-----CCCCCHHHHHHHHh--CCCChHHHHHHHHHHHHH
Confidence 999988766432 36799999999998 677876 99999999986
No 20
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.82 E-value=8.3e-19 Score=208.26 Aligned_cols=244 Identities=13% Similarity=0.189 Sum_probs=185.1
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
|..++.+.++.|++.++|++.+++.|.+.+...... ... ....++|+||+|+|||++|+.||+.+ ..+|+
T Consensus 309 ~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~-~~~------~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~ 378 (784)
T PRK10787 309 VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV-NKI------KGPILCLVGPPGVGKTSLGQSIAKAT---GRKYV 378 (784)
T ss_pred ccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc-ccC------CCceEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 566889999999999999999999999888754321 111 11269999999999999999999988 57799
Q ss_pred EecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhC--CCeEEEEeccccCCHHH----HHHHHhhHhCC-
Q 005186 371 CADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK--PLSVVYLENVDKADVHV----QNSLSKAIQTG- 443 (710)
Q Consensus 371 ~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~--p~sVI~LDEIDKa~~~v----qn~LLq~LE~G- 443 (710)
+++++.... . ....|+...|.|.. .+.+..++.+. ...|||||||||++... +++|+++|+.+
T Consensus 379 ~i~~~~~~d----~-----~~i~g~~~~~~g~~-~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~ 448 (784)
T PRK10787 379 RMALGGVRD----E-----AEIRGHRRTYIGSM-PGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQ 448 (784)
T ss_pred EEEcCCCCC----H-----HHhccchhccCCCC-CcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhcccc
Confidence 998885221 1 12223332333321 13445545442 34699999999999876 59999999965
Q ss_pred --cccCCCC-eEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhcccccccccccccccc
Q 005186 444 --KLPDSYG-REVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEG 520 (710)
Q Consensus 444 --~l~d~~G-r~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 520 (710)
.|.|.+. -.+|+++++||+|+|..
T Consensus 449 ~~~~~d~~~~~~~dls~v~~i~TaN~~----------------------------------------------------- 475 (784)
T PRK10787 449 NVAFSDHYLEVDYDLSDVMFVATSNSM----------------------------------------------------- 475 (784)
T ss_pred EEEEecccccccccCCceEEEEcCCCC-----------------------------------------------------
Confidence 5666553 56899999999999841
Q ss_pred chhhhhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcce
Q 005186 521 MSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVK 600 (710)
Q Consensus 521 ~~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~ 600 (710)
.+.+.|++|+.
T Consensus 476 --------------------------------------------------------------------~i~~aLl~R~~- 486 (784)
T PRK10787 476 --------------------------------------------------------------------NIPAPLLDRME- 486 (784)
T ss_pred --------------------------------------------------------------------CCCHHHhccee-
Confidence 12356899995
Q ss_pred eeecCCCCHHHHHHHHHHHHH-HHHhhhcC-CCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcC
Q 005186 601 IVAFKAFNFDALAEKILKDIN-ASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYN 677 (710)
Q Consensus 601 iVvF~PLD~d~Laeiil~~L~-~~~~~~~g-~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~ 677 (710)
+|.|.+|+.+++.+|+.+.+. ++.++. | .+..+.++++|+++|+. +|.++ |+|.|++.|++++...+++...+..
T Consensus 487 ii~~~~~t~eek~~Ia~~~L~~k~~~~~-~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~ 564 (784)
T PRK10787 487 VIRLSGYTEDEKLNIAKRHLLPKQIERN-ALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQLLLDKS 564 (784)
T ss_pred eeecCCCCHHHHHHHHHHhhhHHHHHHh-CCCCCeEEECHHHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 899999999999999988886 344443 3 45689999999999998 68888 9999999999999999999887654
Q ss_pred c
Q 005186 678 L 678 (710)
Q Consensus 678 ~ 678 (710)
.
T Consensus 565 ~ 565 (784)
T PRK10787 565 L 565 (784)
T ss_pred C
Confidence 3
No 21
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.2e-18 Score=195.78 Aligned_cols=244 Identities=15% Similarity=0.213 Sum_probs=190.1
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
|..+++..++.|++.-+|-+++++.|.+.+...+..-.. .-..++|+||||||||.|++.||+.+ +..|+
T Consensus 310 ~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~-------kGpILcLVGPPGVGKTSLgkSIA~al---~Rkfv 379 (782)
T COG0466 310 DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKL-------KGPILCLVGPPGVGKTSLGKSIAKAL---GRKFV 379 (782)
T ss_pred hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccC-------CCcEEEEECCCCCCchhHHHHHHHHh---CCCEE
Confidence 778999999999999999999999999999866542111 12389999999999999999999999 88999
Q ss_pred EecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhC--CCeEEEEeccccCCHH----HHHHHHhhHh---
Q 005186 371 CADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK--PLSVVYLENVDKADVH----VQNSLSKAIQ--- 441 (710)
Q Consensus 371 ~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~--p~sVI~LDEIDKa~~~----vqn~LLq~LE--- 441 (710)
++.++...++ .+..|+...|.|.-. |++...+++. ...|++|||||||..+ -..+||.+||
T Consensus 380 R~sLGGvrDE---------AEIRGHRRTYIGamP-GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQ 449 (782)
T COG0466 380 RISLGGVRDE---------AEIRGHRRTYIGAMP-GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQ 449 (782)
T ss_pred EEecCccccH---------HHhccccccccccCC-hHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhh
Confidence 9999864331 244555555555422 3555555542 2459999999999764 4689999996
Q ss_pred CCcccCCC-CeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhcccccccccccccccc
Q 005186 442 TGKLPDSY-GREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEG 520 (710)
Q Consensus 442 ~G~l~d~~-Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 520 (710)
+..|.|.+ ...+|+++++||+|+|...
T Consensus 450 N~~F~DhYLev~yDLS~VmFiaTANsl~---------------------------------------------------- 477 (782)
T COG0466 450 NNTFSDHYLEVPYDLSKVMFIATANSLD---------------------------------------------------- 477 (782)
T ss_pred cCchhhccccCccchhheEEEeecCccc----------------------------------------------------
Confidence 67888876 4688999999999999410
Q ss_pred chhhhhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcce
Q 005186 521 MSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVK 600 (710)
Q Consensus 521 ~~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~ 600 (710)
.....|++|+.
T Consensus 478 --------------------------------------------------------------------tIP~PLlDRME- 488 (782)
T COG0466 478 --------------------------------------------------------------------TIPAPLLDRME- 488 (782)
T ss_pred --------------------------------------------------------------------cCChHHhccee-
Confidence 23346788885
Q ss_pred eeecCCCCHHHHHHHHHHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhc
Q 005186 601 IVAFKAFNFDALAEKILKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKY 676 (710)
Q Consensus 601 iVvF~PLD~d~Laeiil~~L~~~~~~~~g-~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~ 676 (710)
+|.+..++.++-.+|..+.|-.+.-+..| ..-.|.|+++|+..|+.+ |..+ |.|.|++.|.++......+++.+.
T Consensus 489 iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~-YTREAGVR~LeR~i~ki~RK~~~~i~~~~ 565 (782)
T COG0466 489 VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRY-YTREAGVRNLEREIAKICRKAAKKILLKK 565 (782)
T ss_pred eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHH-HhHhhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999998888887777544444334 445799999999999998 7777 999999999999999999888844
No 22
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.77 E-value=3e-18 Score=185.59 Aligned_cols=223 Identities=15% Similarity=0.158 Sum_probs=159.2
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 385 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~ 385 (710)
++|++.++..+.+.+.+... .+.++||.|++||||+.+|++|+........+|+.+||+....
T Consensus 1 liG~S~~m~~~~~~~~~~a~-----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~------ 63 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE------ 63 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh------
Confidence 58999999999888887743 3458999999999999999999998877789999999996321
Q ss_pred Ccccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEcc
Q 005186 386 KFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTAS 464 (710)
Q Consensus 386 sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTS 464 (710)
+++...+||+..+ |.|... .-.+.+.....++||||||+.++..+|..|+++|++|.+....+...--.++.||+||
T Consensus 64 ~~l~~~lfG~~~g~~~ga~~--~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at 141 (329)
T TIGR02974 64 NLLDSELFGHEAGAFTGAQK--RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCAT 141 (329)
T ss_pred HHHHHHHhccccccccCccc--ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEec
Confidence 2223456776654 333221 1123345566799999999999999999999999999887644433333457799998
Q ss_pred CCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCCCh
Q 005186 465 SFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDT 544 (710)
Q Consensus 465 N~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~~ 544 (710)
|..... ++
T Consensus 142 ~~~l~~---------------------------~~--------------------------------------------- 149 (329)
T TIGR02974 142 NADLPA---------------------------LA--------------------------------------------- 149 (329)
T ss_pred hhhHHH---------------------------Hh---------------------------------------------
Confidence 841000 00
Q ss_pred HHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcce-eeecCCC-----CHHHHHHHHHH
Q 005186 545 SEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVK-IVAFKAF-----NFDALAEKILK 618 (710)
Q Consensus 545 ~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~-iVvF~PL-----D~d~Laeiil~ 618 (710)
....|+++|++|+.. .|...|| |...|++.++.
T Consensus 150 -----------------------------------------~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 150 -----------------------------------------AEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred -----------------------------------------hcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 001688999999965 5777778 34445666666
Q ss_pred HHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 619 DINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 619 ~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
++..++. ..+...|+++|++.|..+ .|+|+ |.|++.|++.+.
T Consensus 189 ~~~~~~~----~~~~~~ls~~a~~~L~~y--~WPGNvrEL~n~i~~~~~ 231 (329)
T TIGR02974 189 RMARELG----LPLFPGFTPQAREQLLEY--HWPGNVRELKNVVERSVY 231 (329)
T ss_pred HHHHHhC----CCCCCCcCHHHHHHHHhC--CCCchHHHHHHHHHHHHH
Confidence 6544432 232257999999999995 56655 899999998765
No 23
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.2e-17 Score=186.66 Aligned_cols=245 Identities=16% Similarity=0.214 Sum_probs=188.9
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
|..++..-++.|.+.-+|-++.++.|.+.|..++....-. --.++|+||||||||.+|+.||+.| +..|.
T Consensus 398 En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~q-------GkIlCf~GPPGVGKTSI~kSIA~AL---nRkFf 467 (906)
T KOG2004|consen 398 ENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQ-------GKILCFVGPPGVGKTSIAKSIARAL---NRKFF 467 (906)
T ss_pred hhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCC-------CcEEEEeCCCCCCcccHHHHHHHHh---CCceE
Confidence 5567777889999999999999999999999887622111 1289999999999999999999999 78899
Q ss_pred EecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhC--CCeEEEEeccccCCH----HHHHHHHhhHh---
Q 005186 371 CADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK--PLSVVYLENVDKADV----HVQNSLSKAIQ--- 441 (710)
Q Consensus 371 ~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~--p~sVI~LDEIDKa~~----~vqn~LLq~LE--- 441 (710)
++..+.. .+.. +..|+...|+|.-. |.+.+.+++. .+.+|+||||||+.. +-..+||.+|+
T Consensus 468 RfSvGG~----tDvA-----eIkGHRRTYVGAMP-GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQ 537 (906)
T KOG2004|consen 468 RFSVGGM----TDVA-----EIKGHRRTYVGAMP-GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQ 537 (906)
T ss_pred EEecccc----ccHH-----hhcccceeeeccCC-hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhh
Confidence 9988863 2222 23344444444321 4666666652 345999999999864 45678999996
Q ss_pred CCcccCCC-CeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhcccccccccccccccc
Q 005186 442 TGKLPDSY-GREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEG 520 (710)
Q Consensus 442 ~G~l~d~~-Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 520 (710)
+..|.|.+ ...+|++.++||+|+|.-.
T Consensus 538 NanFlDHYLdVp~DLSkVLFicTAN~id---------------------------------------------------- 565 (906)
T KOG2004|consen 538 NANFLDHYLDVPVDLSKVLFICTANVID---------------------------------------------------- 565 (906)
T ss_pred ccchhhhccccccchhheEEEEeccccc----------------------------------------------------
Confidence 56777765 4789999999999999510
Q ss_pred chhhhhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcce
Q 005186 521 MSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVK 600 (710)
Q Consensus 521 ~~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~ 600 (710)
...+.|++|+.
T Consensus 566 --------------------------------------------------------------------tIP~pLlDRME- 576 (906)
T KOG2004|consen 566 --------------------------------------------------------------------TIPPPLLDRME- 576 (906)
T ss_pred --------------------------------------------------------------------cCChhhhhhhh-
Confidence 23456778875
Q ss_pred eeecCCCCHHHHHHHHHHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcC
Q 005186 601 IVAFKAFNFDALAEKILKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYN 677 (710)
Q Consensus 601 iVvF~PLD~d~Laeiil~~L~~~~~~~~g-~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~ 677 (710)
+|...-+..++-.+|..+.|..+..+..| ..-.+.|+++|+..|+.+ |.++ |.|.|++.||+++...-.++..+.+
T Consensus 577 vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~-YcrEaGVRnLqk~iekI~Rk~Al~vv~~~~ 654 (906)
T KOG2004|consen 577 VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIER-YCREAGVRNLQKQIEKICRKVALKVVEGEN 654 (906)
T ss_pred eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 78888888888888888888777666655 444699999999999998 6676 9999999999999998888777664
No 24
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.72 E-value=3.2e-17 Score=188.35 Aligned_cols=224 Identities=16% Similarity=0.192 Sum_probs=158.4
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
.+.++|++.++..+.+.+.+... ...+++|+|++||||+.+|++|++...+...+|+.+||+....
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~--- 260 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE--- 260 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH---
Confidence 44789999999999888887643 3458999999999999999999999887888999999996321
Q ss_pred CCCCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEE
Q 005186 383 NPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFV 461 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~I 461 (710)
..+...++|+..+ |.|... .-.+.+.....++||||||+++++.+|..|+++|++|.+....|...--.++.||
T Consensus 261 ---~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 335 (534)
T TIGR01817 261 ---TLLESELFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLV 335 (534)
T ss_pred ---HHHHHHHcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEE
Confidence 2223456676544 222210 0112233445789999999999999999999999999887544422222346699
Q ss_pred EccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCC
Q 005186 462 TASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQ 541 (710)
Q Consensus 462 lTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~ 541 (710)
+||+.....
T Consensus 336 ~~s~~~l~~----------------------------------------------------------------------- 344 (534)
T TIGR01817 336 AATNRDLEE----------------------------------------------------------------------- 344 (534)
T ss_pred EeCCCCHHH-----------------------------------------------------------------------
Confidence 988841100
Q ss_pred CChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCccee-eecCCC-----CHHHHHHH
Q 005186 542 HDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAF-----NFDALAEK 615 (710)
Q Consensus 542 ~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~i-VvF~PL-----D~d~Laei 615 (710)
.+ ....|+++|++|++.+ |...|| |...|++.
T Consensus 345 --------~~----------------------------------~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~ 382 (534)
T TIGR01817 345 --------AV----------------------------------AKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEA 382 (534)
T ss_pred --------HH----------------------------------HcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHH
Confidence 00 0116899999999775 555567 44556666
Q ss_pred HHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 616 ILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 616 il~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
+++++..++ +.. +.|+++|++.|..+ .|+|+ |.|++.|++.+.
T Consensus 383 ~l~~~~~~~----~~~--~~~s~~a~~~L~~~--~WPGNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 383 FLEKFNREN----GRP--LTITPSAIRVLMSC--KWPGNVRELENCLERTAT 426 (534)
T ss_pred HHHHHHHHc----CCC--CCCCHHHHHHHHhC--CCCChHHHHHHHHHHHHH
Confidence 666654433 223 68999999999995 56655 899999998764
No 25
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.72 E-value=7.6e-17 Score=174.45 Aligned_cols=225 Identities=16% Similarity=0.199 Sum_probs=158.5
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
.+.++|.+.++..+.+.+.+... ...++++.|++||||+.+|++|+........+|+.+||+....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~-----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~--- 70 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE--- 70 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH---
Confidence 34689999999999988887743 3458999999999999999999987766778999999996321
Q ss_pred CCCCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC-eEeecCceEE
Q 005186 383 NPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG-REVSVSNAIF 460 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G-r~vd~~n~I~ 460 (710)
..+...++|+..+ |.|... .-.+.+.....++||||||+.+++.+|..|+++|++|.+....+ +.+. .++.|
T Consensus 71 ---~~~~~~lfg~~~~~~~g~~~--~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~-~~~Ri 144 (326)
T PRK11608 71 ---NLLDSELFGHEAGAFTGAQK--RHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQ-VNVRL 144 (326)
T ss_pred ---HHHHHHHccccccccCCccc--ccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceee-ccEEE
Confidence 1222345666543 223211 11233455667999999999999999999999999998765433 2222 35679
Q ss_pred EEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCC
Q 005186 461 VTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQ 540 (710)
Q Consensus 461 IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e 540 (710)
|+||+..... ++
T Consensus 145 I~~s~~~l~~---------------------------l~----------------------------------------- 156 (326)
T PRK11608 145 VCATNADLPA---------------------------MV----------------------------------------- 156 (326)
T ss_pred EEeCchhHHH---------------------------HH-----------------------------------------
Confidence 9988741100 00
Q ss_pred CCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcce-eeecCCC-----CHHHHHH
Q 005186 541 QHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVK-IVAFKAF-----NFDALAE 614 (710)
Q Consensus 541 ~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~-iVvF~PL-----D~d~Lae 614 (710)
....|+++|++|+.. .|...|| |...|++
T Consensus 157 ---------------------------------------------~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~ 191 (326)
T PRK11608 157 ---------------------------------------------AEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAE 191 (326)
T ss_pred ---------------------------------------------HcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHH
Confidence 001688999999954 6777777 4455666
Q ss_pred HHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 615 KILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 615 iil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
.+++++...+. ..+...|+++|++.|.. |.|+|+ |.|++.|++.+.
T Consensus 192 ~fl~~~~~~~~----~~~~~~~s~~al~~L~~--y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 192 HFAIQMCRELG----LPLFPGFTERARETLLN--YRWPGNIRELKNVVERSVY 238 (326)
T ss_pred HHHHHHHHHhC----CCCCCCCCHHHHHHHHh--CCCCcHHHHHHHHHHHHHH
Confidence 66666544432 23335799999999998 566766 899999988764
No 26
>CHL00181 cbbX CbbX; Provisional
Probab=99.72 E-value=4.7e-16 Score=165.46 Aligned_cols=230 Identities=13% Similarity=0.143 Sum_probs=157.6
Q ss_pred cccchHhHHHHHHHhcCcccccHHHHHHHHHHHHHH-------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHH
Q 005186 288 CQFDLSNWKTLFRALTEKIDWQDEAISVISQTIAQR-------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 288 ~~~d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~-------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
..++...++.+.+.|.+.++|++.+++.|.+.+... ..|+..+ ++..+++|+||||||||++|+++|+
T Consensus 7 ~~~~~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~-----~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 7 EEYEKTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSS-----NPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred hhccccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----CCCceEEEECCCCCCHHHHHHHHHH
Confidence 345667889999999999999999998776654321 2233222 2345799999999999999999999
Q ss_pred HHcC----CCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC--------
Q 005186 361 IIYG----GKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-------- 428 (710)
Q Consensus 361 ~L~g----s~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-------- 428 (710)
.++. ...+++.++.+..- ..|+|... ....+.+.+...+||||||++.+
T Consensus 82 ~~~~~g~~~~~~~~~v~~~~l~-----------~~~~g~~~--------~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~ 142 (287)
T CHL00181 82 ILYKLGYIKKGHLLTVTRDDLV-----------GQYIGHTA--------PKTKEVLKKAMGGVLFIDEAYYLYKPDNERD 142 (287)
T ss_pred HHHHcCCCCCCceEEecHHHHH-----------HHHhccch--------HHHHHHHHHccCCEEEEEccchhccCCCccc
Confidence 8863 22346666544210 12333221 12345566667799999999985
Q ss_pred -CHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccc
Q 005186 429 -DVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRS 507 (710)
Q Consensus 429 -~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~ 507 (710)
..++++.|+++|+++. .+++||++++.. ++
T Consensus 143 ~~~e~~~~L~~~me~~~-----------~~~~vI~ag~~~------------------~~-------------------- 173 (287)
T CHL00181 143 YGSEAIEILLQVMENQR-----------DDLVVIFAGYKD------------------RM-------------------- 173 (287)
T ss_pred hHHHHHHHHHHHHhcCC-----------CCEEEEEeCCcH------------------HH--------------------
Confidence 5789999999998643 356787865420 00
Q ss_pred cccccccccccccchhhhhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCccccc
Q 005186 508 SSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENT 587 (710)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~ 587 (710)
.+. +
T Consensus 174 -----------------------------------------~~~-------~---------------------------- 177 (287)
T CHL00181 174 -----------------------------------------DKF-------Y---------------------------- 177 (287)
T ss_pred -----------------------------------------HHH-------H----------------------------
Confidence 000 0
Q ss_pred ccchhHHhcCcceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHH----hcCCCC-C-hHHHHHHH
Q 005186 588 KSWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLA----AAYLSE-S-NRVIEDWL 661 (710)
Q Consensus 588 ~~f~~efl~RiD~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~----~~~~~~-G-aR~le~~I 661 (710)
...|.|..|++.+|.|.|++.+++.+++.+.+.+. . ..+++++.+.|+. ..+... | +|.++++|
T Consensus 178 -~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~-~--------~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 178 -ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ-Q--------YQLTPEAEKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred -hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh-c--------CCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 12378999999999999999999999988877553 1 3345555544444 343333 6 79999999
Q ss_pred HHHHHHHHHHHHHhc
Q 005186 662 EKVLVRGFLDAQEKY 676 (710)
Q Consensus 662 E~vl~~~L~el~~~~ 676 (710)
++.....-.++....
T Consensus 248 e~~~~~~~~r~~~~~ 262 (287)
T CHL00181 248 DRARMRQANRIFESG 262 (287)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999988888877764
No 27
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.71 E-value=1.1e-16 Score=183.04 Aligned_cols=224 Identities=14% Similarity=0.147 Sum_probs=160.8
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
..++|++.++..+.+.+..... .+.++|+.|++||||+.+|++|+......+.+|+.+||+....
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~-----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~---- 251 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAA-----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE---- 251 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh----
Confidence 3699999999999999987643 3458999999999999999999998877788999999997422
Q ss_pred CCCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEE
Q 005186 384 PPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVT 462 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~Il 462 (710)
+++...+||+..+ |.|... .-.+.+.....++||||||+.+++.+|..|+++|++|.+....+....-.++.||+
T Consensus 252 --~~~e~~lfG~~~g~~~ga~~--~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 327 (509)
T PRK05022 252 --SLAESELFGHVKGAFTGAIS--NRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIA 327 (509)
T ss_pred --HHHHHHhcCccccccCCCcc--cCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEE
Confidence 2223456776554 333211 01122344567899999999999999999999999998765433222223466999
Q ss_pred ccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCC
Q 005186 463 ASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQH 542 (710)
Q Consensus 463 TSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~ 542 (710)
|||..... .+ .
T Consensus 328 ~t~~~l~~---------------------------~~----------------------------~-------------- 338 (509)
T PRK05022 328 ATNRDLRE---------------------------EV----------------------------R-------------- 338 (509)
T ss_pred ecCCCHHH---------------------------HH----------------------------H--------------
Confidence 99841100 00 0
Q ss_pred ChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCccee-eecCCC-----CHHHHHHHH
Q 005186 543 DTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAF-----NFDALAEKI 616 (710)
Q Consensus 543 ~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~i-VvF~PL-----D~d~Laeii 616 (710)
...|+++|++|+..+ |...|| |...|++.+
T Consensus 339 --------------------------------------------~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~f 374 (509)
T PRK05022 339 --------------------------------------------AGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYF 374 (509)
T ss_pred --------------------------------------------cCCccHHHHhcccccEeeCCCchhchhhHHHHHHHH
Confidence 016889999999776 666667 455667777
Q ss_pred HHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 617 LKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 617 l~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
++++..++.. -.+.|+++|++.|.. |.|+|+ |.|++.|++.+.
T Consensus 375 l~~~~~~~~~-----~~~~~s~~a~~~L~~--y~WPGNvrEL~~~i~ra~~ 418 (509)
T PRK05022 375 LEQNRARLGL-----RSLRLSPAAQAALLA--YDWPGNVRELEHVISRAAL 418 (509)
T ss_pred HHHHHHHcCC-----CCCCCCHHHHHHHHh--CCCCCcHHHHHHHHHHHHH
Confidence 7776554431 226899999999998 566755 899999998764
No 28
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.70 E-value=1.3e-16 Score=182.07 Aligned_cols=145 Identities=12% Similarity=0.104 Sum_probs=108.9
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.++|++.++..+...+.+... .+.++|+.|++||||+.+|++|+......+.||+.+||+....
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~-----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e---- 276 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR-----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE---- 276 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh----
Confidence 3499999999999888876643 3458999999999999999999998877889999999996322
Q ss_pred CCCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEE
Q 005186 384 PPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVT 462 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~Il 462 (710)
+++...++|+..+ |.|.... .-.+.+.....++||||||+.+++.+|..|+++|+++.+...++...---++.+|+
T Consensus 277 --~lleseLFG~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIa 353 (526)
T TIGR02329 277 --SLLEAELFGYEEGAFTGARRG-GRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVA 353 (526)
T ss_pred --hHHHHHhcCCccccccccccc-ccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEe
Confidence 2334578888776 4443211 11234445567899999999999999999999999998875443221112455999
Q ss_pred ccCC
Q 005186 463 ASSF 466 (710)
Q Consensus 463 TSN~ 466 (710)
|||.
T Consensus 354 at~~ 357 (526)
T TIGR02329 354 ATHC 357 (526)
T ss_pred ccCC
Confidence 8884
No 29
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.9e-16 Score=166.79 Aligned_cols=84 Identities=13% Similarity=0.210 Sum_probs=69.8
Q ss_pred cchhHHhcCcceeeecCCCCHHHHHHHHH---HHHHHHHhhhcC-CCceEEeCHHHHHHHHHhcCCC-----C-ChHHHH
Q 005186 589 SWLQDFFNQRVKIVAFKAFNFDALAEKIL---KDINASFRKTVG-SECLLEIDRKVMEQLLAAAYLS-----E-SNRVIE 658 (710)
Q Consensus 589 ~f~~efl~RiD~iVvF~PLD~d~Laeiil---~~L~~~~~~~~g-~~i~LeId~eale~La~~~~~~-----~-GaR~le 658 (710)
-++|||-+|+.-.|.+.+|+.+++.+|+. ..|-++|...+. .++.|+|+++|++.|+..+|.- + |||.|+
T Consensus 318 DLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLh 397 (444)
T COG1220 318 DLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLH 397 (444)
T ss_pred hcChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHH
Confidence 37899999999999999999999999983 455566666554 6899999999999999999843 2 999999
Q ss_pred HHHHHHHHHHHHHH
Q 005186 659 DWLEKVLVRGFLDA 672 (710)
Q Consensus 659 ~~IE~vl~~~L~el 672 (710)
..+|++|...-.++
T Consensus 398 TvlErlLediSFeA 411 (444)
T COG1220 398 TVLERLLEDISFEA 411 (444)
T ss_pred HHHHHHHHHhCccC
Confidence 99999987655443
No 30
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.69 E-value=1.8e-16 Score=181.05 Aligned_cols=145 Identities=13% Similarity=0.101 Sum_probs=108.6
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHH--------HcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEI--------IYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~--------L~gs~~~fI~iD~s 375 (710)
+.++|++.++..+.+.+.+... .+.++|+.|++||||+.+|++|+.. ....+.||+.+||+
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~-----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCa 287 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR-----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCG 287 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecc
Confidence 4599999999999888876643 3458999999999999999999998 55667899999999
Q ss_pred CCCCCCCCCCCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
.... +++...+|||..+ |.|....+ -.+.+.....++||||||+.+++.+|..|+++|+++.+....|...-
T Consensus 288 al~e------~lleseLFG~~~gaftga~~~~-~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~ 360 (538)
T PRK15424 288 AIAE------SLLEAELFGYEEGAFTGSRRGG-RAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV 360 (538)
T ss_pred cCCh------hhHHHHhcCCccccccCccccc-cCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCcee
Confidence 6322 3345578888776 44432101 12334456679999999999999999999999999988764442211
Q ss_pred cCceEEEEccCC
Q 005186 455 VSNAIFVTASSF 466 (710)
Q Consensus 455 ~~n~I~IlTSN~ 466 (710)
--++.+|++||.
T Consensus 361 ~~dvRiIaat~~ 372 (538)
T PRK15424 361 PVDVRVISATHC 372 (538)
T ss_pred ccceEEEEecCC
Confidence 124569999884
No 31
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.67 E-value=5.7e-16 Score=177.42 Aligned_cols=225 Identities=12% Similarity=0.068 Sum_probs=156.0
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
.+.++|++.++..+...+++... .+.+++++|++||||+.+|++|+........+|+.+||+....
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~-----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~--- 268 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAM-----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD--- 268 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH---
Confidence 34799999999888887776533 2347999999999999999999998887788999999996422
Q ss_pred CCCCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEE
Q 005186 383 NPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFV 461 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~I 461 (710)
+.....++|+..+ |.|.. ....+.+.....++||||||+.+++.+|..|+++|++|.++...+...--.++.||
T Consensus 269 ---~~~e~elFG~~~~~~~~~~--~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI 343 (520)
T PRK10820 269 ---DVVESELFGHAPGAYPNAL--EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 343 (520)
T ss_pred ---HHHHHHhcCCCCCCcCCcc--cCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEE
Confidence 2223356676543 22211 00112344456789999999999999999999999999887644322122346699
Q ss_pred EccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCC
Q 005186 462 TASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQ 541 (710)
Q Consensus 462 lTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~ 541 (710)
+||+..... ++ .
T Consensus 344 ~st~~~l~~---------------------------l~----------------------------~------------- 355 (520)
T PRK10820 344 CATQKNLVE---------------------------LV----------------------------Q------------- 355 (520)
T ss_pred EecCCCHHH---------------------------HH----------------------------H-------------
Confidence 988741100 00 0
Q ss_pred CChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcce-eeecCCC-----CHHHHHHH
Q 005186 542 HDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVK-IVAFKAF-----NFDALAEK 615 (710)
Q Consensus 542 ~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~-iVvF~PL-----D~d~Laei 615 (710)
...|+++|++|+.. .|...|| |...|++.
T Consensus 356 ---------------------------------------------~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~ 390 (520)
T PRK10820 356 ---------------------------------------------KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTEL 390 (520)
T ss_pred ---------------------------------------------cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHH
Confidence 01688899999865 4666667 44456667
Q ss_pred HHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 616 ILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 616 il~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
+++++..++.. ....++++|+++|..+ .|+|+ |.|++.|++.+.
T Consensus 391 fl~~~~~~~g~-----~~~~ls~~a~~~L~~y--~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 391 FVARFADEQGV-----PRPKLAADLNTVLTRY--GWPGNVRQLKNAIYRALT 435 (520)
T ss_pred HHHHHHHHcCC-----CCCCcCHHHHHHHhcC--CCCCHHHHHHHHHHHHHH
Confidence 77766554322 1247999999999884 55655 889988888864
No 32
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.67 E-value=3.9e-16 Score=182.95 Aligned_cols=219 Identities=13% Similarity=0.156 Sum_probs=154.3
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
...++|++.++..+.+.+..... ...+++|.|++||||+.+|++|++.......+|+.+||+....
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~--- 389 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAK-----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD--- 389 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh---
Confidence 45689999999888887776542 3458999999999999999999999877788999999996321
Q ss_pred CCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC---eEeecCceE
Q 005186 383 NPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG---REVSVSNAI 459 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G---r~vd~~n~I 459 (710)
+.+...++|+..+..... ..+.+.....++||||||+.+++.+|..|+++|++|.++..++ +.++ +.
T Consensus 390 ---~~~~~elfg~~~~~~~~~----~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~---~r 459 (638)
T PRK11388 390 ---EALAEEFLGSDRTDSENG----RLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVD---VR 459 (638)
T ss_pred ---HHHHHHhcCCCCcCccCC----CCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEee---EE
Confidence 122335667653211110 1122344567999999999999999999999999998875444 2344 45
Q ss_pred EEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCC
Q 005186 460 FVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNP 539 (710)
Q Consensus 460 ~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~ 539 (710)
||+|||..... ++ .
T Consensus 460 iI~~t~~~l~~---------------------------~~----------------------------~----------- 473 (638)
T PRK11388 460 VIATTTADLAM---------------------------LV----------------------------E----------- 473 (638)
T ss_pred EEEeccCCHHH---------------------------HH----------------------------h-----------
Confidence 99999841100 00 0
Q ss_pred CCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCccee-eecCCC-----CHHHHH
Q 005186 540 QQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAF-----NFDALA 613 (710)
Q Consensus 540 e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~i-VvF~PL-----D~d~La 613 (710)
...|+++|++|+... |...|| |...|+
T Consensus 474 -----------------------------------------------~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~ 506 (638)
T PRK11388 474 -----------------------------------------------QNRFSRQLYYALHAFEITIPPLRMRREDIPALV 506 (638)
T ss_pred -----------------------------------------------cCCChHHHhhhhceeEEeCCChhhhhhHHHHHH
Confidence 016888999999765 555556 444566
Q ss_pred HHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 614 EKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 614 eiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
+.+++++..++ + ..+.|+++|++.|.. |.|+|+ |.|++.|++.+.
T Consensus 507 ~~~l~~~~~~~----~--~~~~~s~~a~~~L~~--y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 507 NNKLRSLEKRF----S--TRLKIDDDALARLVS--YRWPGNDFELRSVIENLAL 552 (638)
T ss_pred HHHHHHHHHHh----C--CCCCcCHHHHHHHHc--CCCCChHHHHHHHHHHHHH
Confidence 66666654433 2 235799999999998 566655 899999998663
No 33
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.66 E-value=6.6e-15 Score=156.50 Aligned_cols=226 Identities=12% Similarity=0.085 Sum_probs=157.0
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHH-------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQR-------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~-------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
+-..++++.+.|.+.++|.+++++.|.+.+... +.|+... .+..+++|+||+|||||++|+++|+.++
T Consensus 9 ~~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~-----~~~~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 9 EASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA-----APTLHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred hhccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-----CCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 344578889999999999999998886654422 2233221 2345899999999999999999999886
Q ss_pred CC----CcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC---------CH
Q 005186 364 GG----KENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA---------DV 430 (710)
Q Consensus 364 gs----~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa---------~~ 430 (710)
.. ..+|+.+++... . ..|+|... ..+.+.+.+...+|||||||+.+ ..
T Consensus 84 ~~g~~~~~~~v~v~~~~l----~-------~~~~g~~~--------~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~ 144 (284)
T TIGR02880 84 RLGYVRKGHLVSVTRDDL----V-------GQYIGHTA--------PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQ 144 (284)
T ss_pred HcCCcccceEEEecHHHH----h-------Hhhcccch--------HHHHHHHHHccCcEEEEechhhhccCCCccchHH
Confidence 32 236777776531 0 12344321 23445566666799999999977 46
Q ss_pred HHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhcccccc
Q 005186 431 HVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQ 510 (710)
Q Consensus 431 ~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~ 510 (710)
.+++.|++.|++++ .+++||++++.. ++
T Consensus 145 ~~~~~Ll~~le~~~-----------~~~~vI~a~~~~------------------~~----------------------- 172 (284)
T TIGR02880 145 EAIEILLQVMENQR-----------DDLVVILAGYKD------------------RM----------------------- 172 (284)
T ss_pred HHHHHHHHHHhcCC-----------CCEEEEEeCCcH------------------HH-----------------------
Confidence 78999999998653 456788876520 00
Q ss_pred ccccccccccchhhhhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccc
Q 005186 511 KLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSW 590 (710)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f 590 (710)
... ...
T Consensus 173 --------------------------------------~~~------------------------------------~~~ 178 (284)
T TIGR02880 173 --------------------------------------DSF------------------------------------FES 178 (284)
T ss_pred --------------------------------------HHH------------------------------------Hhh
Confidence 000 012
Q ss_pred hhHHhcCcceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhc-----CCCCC-hHHHHHHHHHH
Q 005186 591 LQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAA-----YLSES-NRVIEDWLEKV 664 (710)
Q Consensus 591 ~~efl~RiD~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~-----~~~~G-aR~le~~IE~v 664 (710)
.|.|..|++..|.|.||+.+++..++...+.+. . ..+++++++.|..+. ..+.| +|.|++++++.
T Consensus 179 np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~-~--------~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 179 NPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ-Q--------YRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred CHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh-c--------cccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 367899999999999999999999988876552 1 346788888887641 14455 69999999999
Q ss_pred HHHHHHHHHHh
Q 005186 665 LVRGFLDAQEK 675 (710)
Q Consensus 665 l~~~L~el~~~ 675 (710)
+...-.++...
T Consensus 250 ~~~~~~r~~~~ 260 (284)
T TIGR02880 250 RLRQANRLFCD 260 (284)
T ss_pred HHHHHHHHhcC
Confidence 87776666544
No 34
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.65 E-value=2.2e-15 Score=178.10 Aligned_cols=223 Identities=13% Similarity=0.154 Sum_probs=158.1
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.++|++.++..+.+.+..... ...+++++|++||||+.+|++|+......+.+|+.+||.....
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~-----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~----- 440 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQ-----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA----- 440 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-----
Confidence 699999999999888876542 3458999999999999999999998877788999999996322
Q ss_pred CCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEc
Q 005186 385 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 463 (710)
Q Consensus 385 ~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlT 463 (710)
.++...++|+..+ |.|... ...+.+.....++||||||+.+++.+|..|+++|+++.+....+...-..++.+|+|
T Consensus 441 -~~~~~~lfg~~~~~~~g~~~--~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~ 517 (686)
T PRK15429 441 -GLLESDLFGHERGAFTGASA--QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAA 517 (686)
T ss_pred -hHhhhhhcCccccccccccc--chhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEe
Confidence 1223356666543 233210 112334555679999999999999999999999999988764443322345679999
Q ss_pred cCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCCC
Q 005186 464 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 543 (710)
Q Consensus 464 SN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~ 543 (710)
|+..-..
T Consensus 518 t~~~l~~------------------------------------------------------------------------- 524 (686)
T PRK15429 518 TNRDLKK------------------------------------------------------------------------- 524 (686)
T ss_pred CCCCHHH-------------------------------------------------------------------------
Confidence 8841100
Q ss_pred hHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCccee-eecCCC-----CHHHHHHHHH
Q 005186 544 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAF-----NFDALAEKIL 617 (710)
Q Consensus 544 ~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~i-VvF~PL-----D~d~Laeiil 617 (710)
.+ ....|+.+|++|+... |...|| |...|++.++
T Consensus 525 ------~~----------------------------------~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l 564 (686)
T PRK15429 525 ------MV----------------------------------ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFT 564 (686)
T ss_pred ------HH----------------------------------HcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHH
Confidence 00 0016888999999765 666667 4445666666
Q ss_pred HHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 618 KDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 618 ~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
.++..++.+ .+ ..|+++|++.|..+ .|+|+ |.|++.|++.+.
T Consensus 565 ~~~~~~~~~----~~-~~~s~~al~~L~~y--~WPGNvrEL~~~i~~a~~ 607 (686)
T PRK15429 565 FKIARRMGR----NI-DSIPAETLRTLSNM--EWPGNVRELENVIERAVL 607 (686)
T ss_pred HHHHHHcCC----CC-CCcCHHHHHHHHhC--CCCCcHHHHHHHHHHHHH
Confidence 666554432 22 35899999999884 56655 899999998874
No 35
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.64 E-value=1.3e-15 Score=167.06 Aligned_cols=147 Identities=12% Similarity=0.121 Sum_probs=111.5
Q ss_pred HhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC-CCcceEEecCCCCCC
Q 005186 301 ALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG-GKENFICADLCPQDG 379 (710)
Q Consensus 301 ~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g-s~~~fI~iD~s~~~~ 379 (710)
.....+||.+.....+.+.|+... + ...++|+.|++|+||+.+|++|+...-+ .+.|||.+||+.+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~a-----p------~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYA-----P------SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhC-----C------CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 345669999998888888887621 1 2348999999999999999999966655 588999999997432
Q ss_pred CCCCCCCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCce
Q 005186 380 EMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNA 458 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~ 458 (710)
. +....+||+..| |.|.. +.-.+.+.....+++|||||..+++..|..|+++||+|.+..-.+....-.++
T Consensus 144 ----n--~~~~eLFG~~kGaftGa~--~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dV 215 (403)
T COG1221 144 ----N--LQEAELFGHEKGAFTGAQ--GGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDV 215 (403)
T ss_pred ----C--HHHHHHhccccceeeccc--CCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCc
Confidence 2 222348899887 66632 22345566677899999999999999999999999999988655533333455
Q ss_pred EEEEccCC
Q 005186 459 IFVTASSF 466 (710)
Q Consensus 459 I~IlTSN~ 466 (710)
.+|++||.
T Consensus 216 Rli~AT~~ 223 (403)
T COG1221 216 RLICATTE 223 (403)
T ss_pred eeeecccc
Confidence 59999985
No 36
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.63 E-value=7.1e-16 Score=151.82 Aligned_cols=142 Identities=14% Similarity=0.146 Sum_probs=103.9
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 385 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~ 385 (710)
++|.+.++..+.+.++.... .+.++|++|++||||+.+|++|++...+.+.||+.+||+.+..
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~------ 63 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE------ 63 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H------
T ss_pred CEeCCHHHHHHHHHHHHHhC-----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc------
Confidence 58999999998888877643 3468999999999999999999998888889999999997432
Q ss_pred Ccccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEcc
Q 005186 386 KFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTAS 464 (710)
Q Consensus 386 sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTS 464 (710)
+.....+||+..+ |.|... .-.+.+..+..++||||||+.+++.+|..|+++|++|.+....+...--.++.||+||
T Consensus 64 ~~~e~~LFG~~~~~~~~~~~--~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st 141 (168)
T PF00158_consen 64 ELLESELFGHEKGAFTGARS--DKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAST 141 (168)
T ss_dssp HHHHHHHHEBCSSSSTTTSS--EBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEE
T ss_pred chhhhhhhcccccccccccc--ccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeec
Confidence 2224467787654 223211 1125677778899999999999999999999999999987654432222467799999
Q ss_pred CC
Q 005186 465 SF 466 (710)
Q Consensus 465 N~ 466 (710)
|.
T Consensus 142 ~~ 143 (168)
T PF00158_consen 142 SK 143 (168)
T ss_dssp SS
T ss_pred Cc
Confidence 95
No 37
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.63 E-value=2.4e-15 Score=169.75 Aligned_cols=223 Identities=17% Similarity=0.174 Sum_probs=155.9
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.++|...++..+...+..... ...++++.|++|+||+.+|++|+........+|+.+||+....
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~----- 202 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSR-----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK----- 202 (469)
T ss_pred cceecCHHHHHHHHHHHHHhc-----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-----
Confidence 588988888888777764432 3458999999999999999999999887889999999996322
Q ss_pred CCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEc
Q 005186 385 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 463 (710)
Q Consensus 385 ~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlT 463 (710)
..+...++|+..+ |.|... .-.+.+.....+.+|||||+.+++.+|..|+++|++|.+...+|...-..++.||+|
T Consensus 203 -~~~~~~lfg~~~g~~~~~~~--~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~ 279 (469)
T PRK10923 203 -DLIESELFGHEKGAFTGANT--IRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAA 279 (469)
T ss_pred -HHHHHHhcCCCCCCCCCCCc--CCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEe
Confidence 2223455676554 333211 011223445578999999999999999999999999998765553322345679999
Q ss_pred cCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCCC
Q 005186 464 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 543 (710)
Q Consensus 464 SN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~ 543 (710)
|+.....
T Consensus 280 ~~~~l~~------------------------------------------------------------------------- 286 (469)
T PRK10923 280 THQNLEQ------------------------------------------------------------------------- 286 (469)
T ss_pred CCCCHHH-------------------------------------------------------------------------
Confidence 9841100
Q ss_pred hHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCccee-eecCCC-----CHHHHHHHHH
Q 005186 544 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAF-----NFDALAEKIL 617 (710)
Q Consensus 544 ~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~i-VvF~PL-----D~d~Laeiil 617 (710)
.+ ....|+++|++|+..+ |...|| |...|++.++
T Consensus 287 ------~~----------------------------------~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l 326 (469)
T PRK10923 287 ------RV----------------------------------QEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFL 326 (469)
T ss_pred ------HH----------------------------------HcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHH
Confidence 00 0016889999999655 445555 4556677777
Q ss_pred HHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 618 KDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 618 ~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
+++...+.+ . ...++++|++.|..+ .|+|+ |.|++.|++.+.
T Consensus 327 ~~~~~~~~~----~-~~~~~~~a~~~L~~~--~wpgNv~eL~~~i~~~~~ 369 (469)
T PRK10923 327 QVAARELGV----E-AKLLHPETEAALTRL--AWPGNVRQLENTCRWLTV 369 (469)
T ss_pred HHHHHHcCC----C-CCCcCHHHHHHHHhC--CCCChHHHHHHHHHHHHH
Confidence 766554322 1 146899999999984 56655 899999999875
No 38
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.62 E-value=2.9e-14 Score=145.09 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=73.4
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
-++++||++.+..+.-.+..++... .+..+++|+||||+|||+||+.||+.+ +.+|..+.....+.
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIEK--- 88 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--S---
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhhh---
Confidence 4779999999999877777665410 234599999999999999999999998 66666654432100
Q ss_pred CCCCccccccccccccccccchhhHHHHHHHh-CCCeEEEEeccccCCHHHHHHHHhhHhCCccc
Q 005186 383 NPPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 446 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~ 446 (710)
.+.+...+.. .+..|+|||||++++..+|..|+.+||+|.+.
T Consensus 89 ----------------------~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~id 131 (233)
T PF05496_consen 89 ----------------------AGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKID 131 (233)
T ss_dssp ----------------------CHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEE
T ss_pred ----------------------HHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEE
Confidence 0233333333 45679999999999999999999999999863
No 39
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.61 E-value=3.3e-14 Score=149.09 Aligned_cols=218 Identities=14% Similarity=0.144 Sum_probs=144.9
Q ss_pred HhcCcccccHHHHHHHHHHHHHH-------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC----CCcce
Q 005186 301 ALTEKIDWQDEAISVISQTIAQR-------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG----GKENF 369 (710)
Q Consensus 301 ~L~~~ViGQdeAi~~I~~aI~~~-------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g----s~~~f 369 (710)
.|+. ++|++.++..|...+... +.|.... ....+++|+||||||||++|+++|+.++. ....+
T Consensus 4 ~l~~-~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~-----~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~ 77 (261)
T TIGR02881 4 ELSR-MVGLDEVKALIKEIYAWIQINEKRKEEGLKTS-----KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHL 77 (261)
T ss_pred HHHH-hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCce
Confidence 3444 899999988876554332 2232222 23458999999999999999999998753 22356
Q ss_pred EEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC--------HHHHHHHHhhHh
Q 005186 370 ICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD--------VHVQNSLSKAIQ 441 (710)
Q Consensus 370 I~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~--------~~vqn~LLq~LE 441 (710)
+.++++... ..|+|.. ...+.+.+.+...+|||||||+.+. .++++.|++.|+
T Consensus 78 v~~~~~~l~-----------~~~~g~~--------~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e 138 (261)
T TIGR02881 78 IEVERADLV-----------GEYIGHT--------AQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGME 138 (261)
T ss_pred EEecHHHhh-----------hhhccch--------HHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHh
Confidence 666655311 1222221 1234566666677899999999865 468899999998
Q ss_pred CCcccCCCCeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccc
Q 005186 442 TGKLPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGM 521 (710)
Q Consensus 442 ~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 521 (710)
++. .+.++|++++. . ..
T Consensus 139 ~~~-----------~~~~vila~~~-~-~~-------------------------------------------------- 155 (261)
T TIGR02881 139 DNR-----------NEFVLILAGYS-D-EM-------------------------------------------------- 155 (261)
T ss_pred ccC-----------CCEEEEecCCc-c-hh--------------------------------------------------
Confidence 752 23556665431 0 00
Q ss_pred hhhhhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCccee
Q 005186 522 SHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI 601 (710)
Q Consensus 522 ~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~i 601 (710)
.+ . ..+.|.|..|++..
T Consensus 156 -~~--------------------------~------------------------------------~~~~p~L~sRf~~~ 172 (261)
T TIGR02881 156 -DY--------------------------F------------------------------------LSLNPGLRSRFPIS 172 (261)
T ss_pred -HH--------------------------H------------------------------------HhcChHHHhccceE
Confidence 00 0 02346788899889
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhc----C---CCC-ChHHHHHHHHHHHHHHHHHHH
Q 005186 602 VAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAA----Y---LSE-SNRVIEDWLEKVLVRGFLDAQ 673 (710)
Q Consensus 602 VvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~----~---~~~-GaR~le~~IE~vl~~~L~el~ 673 (710)
|.|.+++.+++.+++.+.+.. ..+.++++++++|+... | ... -+|.+++++|..+.+....+.
T Consensus 173 i~f~~~~~~el~~Il~~~~~~---------~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~ 243 (261)
T TIGR02881 173 IDFPDYTVEELMEIAERMVKE---------REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLL 243 (261)
T ss_pred EEECCCCHHHHHHHHHHHHHH---------cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998876643 12568999999986541 2 112 449999999999988877777
Q ss_pred HhcCc
Q 005186 674 EKYNL 678 (710)
Q Consensus 674 ~~~~~ 678 (710)
.....
T Consensus 244 ~~~~~ 248 (261)
T TIGR02881 244 DKSDY 248 (261)
T ss_pred ccCCC
Confidence 65443
No 40
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.59 E-value=1.6e-14 Score=150.81 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=115.1
Q ss_pred hHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC--CcceEE
Q 005186 294 NWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG--KENFIC 371 (710)
Q Consensus 294 ~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs--~~~fI~ 371 (710)
++..|++.|...++||.-|+..|..+|+....... + +++.++-|+|++||||..+++.||+.+|.. ..+++.
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-p-----~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~ 145 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWANPN-P-----RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVH 145 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-C-----CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHH
Confidence 48899999999999999999999999998876432 2 467899999999999999999999999843 344443
Q ss_pred ecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCe
Q 005186 372 ADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGR 451 (710)
Q Consensus 372 iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr 451 (710)
.=.+. .+|.+. .+ -+.|+- .+..++.+.++.++.++++|||+|||++.+.+.|...|+--- ...
T Consensus 146 ~fvat--~hFP~~------~~---ie~Yk~-eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp----~v~ 209 (344)
T KOG2170|consen 146 HFVAT--LHFPHA------SK---IEDYKE-ELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYP----QVS 209 (344)
T ss_pred Hhhhh--ccCCCh------HH---HHHHHH-HHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcccc----ccc
Confidence 21111 001111 00 111211 223456777788999999999999999999999988887532 223
Q ss_pred EeecCceEEEEccCCCcccc
Q 005186 452 EVSVSNAIFVTASSFVEDAR 471 (710)
Q Consensus 452 ~vd~~n~I~IlTSN~g~~~~ 471 (710)
.++++++|||+-||.|.+.+
T Consensus 210 gv~frkaIFIfLSN~gg~eI 229 (344)
T KOG2170|consen 210 GVDFRKAIFIFLSNAGGSEI 229 (344)
T ss_pred cccccceEEEEEcCCcchHH
Confidence 48899999999999887654
No 41
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.58 E-value=2.4e-14 Score=151.95 Aligned_cols=219 Identities=14% Similarity=0.131 Sum_probs=160.4
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
++.+++++..++.+....++... -+.++|+.|++|+||..+|++-+...-+...||+.+||...+.+
T Consensus 203 F~~~v~~S~~mk~~v~qA~k~Am-----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~-- 269 (511)
T COG3283 203 FEQIVAVSPKMKHVVEQAQKLAM-----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED-- 269 (511)
T ss_pred hHHHhhccHHHHHHHHHHHHhhc-----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh--
Confidence 35588888888777665554433 24589999999999999999999988888999999999975442
Q ss_pred CCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC-eEeecCceEEE
Q 005186 383 NPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG-REVSVSNAIFV 461 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G-r~vd~~n~I~I 461 (710)
....++|||.+|-.|+. +.+.....+.||||||..|+|..|..||+.|.+|.|+.-.+ +++. -++.||
T Consensus 270 ----~aEsElFG~apg~~gk~------GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~-vdVRVI 338 (511)
T COG3283 270 ----AAESELFGHAPGDEGKK------GFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVH-VDVRVI 338 (511)
T ss_pred ----HhHHHHhcCCCCCCCcc------chhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEE-EEEEEE
Confidence 23457899988733332 33445567899999999999999999999999999987544 3433 346699
Q ss_pred EccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCC
Q 005186 462 TASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQ 541 (710)
Q Consensus 462 lTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~ 541 (710)
+||-..- ..++ .
T Consensus 339 catq~nL---------------------------~~lv----------------------------~------------- 350 (511)
T COG3283 339 CATQVNL---------------------------VELV----------------------------Q------------- 350 (511)
T ss_pred ecccccH---------------------------HHHH----------------------------h-------------
Confidence 9887411 0111 0
Q ss_pred CChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCccee-eecCCC-----CHHHHHHH
Q 005186 542 HDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAF-----NFDALAEK 615 (710)
Q Consensus 542 ~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~i-VvF~PL-----D~d~Laei 615 (710)
+-.|+.|+++|++.. +...|| |...|++.
T Consensus 351 ---------------------------------------------~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~ 385 (511)
T COG3283 351 ---------------------------------------------KGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAEL 385 (511)
T ss_pred ---------------------------------------------cCchHHHHHHHhheeeecCCccccCcccchHHHHH
Confidence 016888899999764 555556 66788999
Q ss_pred HHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHH
Q 005186 616 ILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVL 665 (710)
Q Consensus 616 il~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl 665 (710)
+.+++++.+... .-.++++.+.+|..+ .|.|+ |.|++.|-+.+
T Consensus 386 Fv~q~s~elg~p-----~pkl~~~~~~~L~~y--~WpGNVRqL~N~iyRA~ 429 (511)
T COG3283 386 FVQQFSDELGVP-----RPKLAADLLTVLTRY--AWPGNVRQLKNAIYRAL 429 (511)
T ss_pred HHHHHHHHhCCC-----CCccCHHHHHHHHHc--CCCccHHHHHHHHHHHH
Confidence 999998876533 245899999999995 55654 67766665553
No 42
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.58 E-value=1.5e-14 Score=161.96 Aligned_cols=223 Identities=16% Similarity=0.195 Sum_probs=154.9
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.++|...++..+...+..... ...++++.|++|+||+.+|++|+........+|+.+||+....
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~----- 203 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAP-----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE----- 203 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-----
Confidence 588898888888777764321 2347889999999999999999998877788999999996321
Q ss_pred CCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEc
Q 005186 385 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 463 (710)
Q Consensus 385 ~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlT 463 (710)
+++...++|+..+ |.|.. ....+.+.....++||||||+.+++.+|..|+++|+++.+....|....-.++.||+|
T Consensus 204 -~~~~~~lfg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~ 280 (445)
T TIGR02915 204 -NLLESELFGYEKGAFTGAV--KQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCA 280 (445)
T ss_pred -HHHHHHhcCCCCCCcCCCc--cCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEe
Confidence 2233456776554 33321 1112334455679999999999999999999999999987654443222235679998
Q ss_pred cCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCCC
Q 005186 464 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 543 (710)
Q Consensus 464 SN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~ 543 (710)
|+.....
T Consensus 281 ~~~~l~~------------------------------------------------------------------------- 287 (445)
T TIGR02915 281 TNQDLKR------------------------------------------------------------------------- 287 (445)
T ss_pred cCCCHHH-------------------------------------------------------------------------
Confidence 8841100
Q ss_pred hHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCccee-eecCCC-----CHHHHHHHHH
Q 005186 544 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAF-----NFDALAEKIL 617 (710)
Q Consensus 544 ~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~i-VvF~PL-----D~d~Laeiil 617 (710)
.+ ....|+++|++|+... |...|| |...|++.++
T Consensus 288 ------~~----------------------------------~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l 327 (445)
T TIGR02915 288 ------MI----------------------------------AEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFL 327 (445)
T ss_pred ------HH----------------------------------HcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHH
Confidence 00 0016788898998654 555566 5556777777
Q ss_pred HHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 618 KDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 618 ~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
+++...+.+. ...++++|++.|..+ .|+|+ |.|++.|++.+.
T Consensus 328 ~~~~~~~~~~-----~~~~~~~a~~~L~~~--~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 328 ERFARELKRK-----TKGFTDDALRALEAH--AWPGNVRELENKVKRAVI 370 (445)
T ss_pred HHHHHHhCCC-----CCCCCHHHHHHHHhC--CCCChHHHHHHHHHHHHH
Confidence 7776544321 256899999999995 45654 899999998874
No 43
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.57 E-value=5.6e-15 Score=167.18 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=106.1
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCC
Q 005186 307 DWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPK 386 (710)
Q Consensus 307 iGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~s 386 (710)
++++..++++.+.+.+.. +.+.++++.|+||+||..+|++|++..- ...||+.+||..+.. +
T Consensus 316 ~~~d~s~a~l~rk~~rv~-----------~~~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~------~ 377 (606)
T COG3284 316 PLLDPSRATLLRKAERVA-----------ATDLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPE------A 377 (606)
T ss_pred cccCHHHHHHHHHHHHHh-----------hcCCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchH------H
Confidence 466655555555554443 2467999999999999999999999886 789999999997543 3
Q ss_pred cccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC--eEeecCceEEEEc
Q 005186 387 FYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG--REVSVSNAIFVTA 463 (710)
Q Consensus 387 l~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G--r~vd~~n~I~IlT 463 (710)
++..++|||..| |.|....++ .+.+...+.+.+|||||..|+...|..||++|++|.++.-.| .+||++ ||.+
T Consensus 378 liesELFGy~~GafTga~~kG~-~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdir---vi~a 453 (606)
T COG3284 378 LIESELFGYVAGAFTGARRKGY-KGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIR---VIAA 453 (606)
T ss_pred hhhHHHhccCccccccchhccc-cccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEE---EEec
Confidence 445688999876 444322222 345566778999999999999999999999999999987666 466766 9998
Q ss_pred cCC
Q 005186 464 SSF 466 (710)
Q Consensus 464 SN~ 466 (710)
|+.
T Consensus 454 th~ 456 (606)
T COG3284 454 THR 456 (606)
T ss_pred cCc
Confidence 884
No 44
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.56 E-value=3e-14 Score=159.98 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=102.7
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.++|+..++..+...+..... ...++++.|++|+||+.+|++|+........+|+.+||.....
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~----- 207 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIAL-----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE----- 207 (457)
T ss_pred ceecccHHHhHHHHHHHHHcC-----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-----
Confidence 488999888888777765543 3458999999999999999999998877788999999996321
Q ss_pred CCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEc
Q 005186 385 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 463 (710)
Q Consensus 385 ~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlT 463 (710)
..+...++|+..+ |.|... .-.+.+.....++||||||+.+++.+|..|+++|+++.+....+...--.++.||+|
T Consensus 208 -~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~ 284 (457)
T PRK11361 208 -SLLESELFGHEKGAFTGAQT--LRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAA 284 (457)
T ss_pred -HHHHHHhcCCCCCCCCCCCC--CCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEe
Confidence 1223345665543 222211 011234455678999999999999999999999999987653332222235679999
Q ss_pred cCC
Q 005186 464 SSF 466 (710)
Q Consensus 464 SN~ 466 (710)
||.
T Consensus 285 t~~ 287 (457)
T PRK11361 285 TNR 287 (457)
T ss_pred CCC
Confidence 984
No 45
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.55 E-value=4e-14 Score=159.33 Aligned_cols=223 Identities=17% Similarity=0.181 Sum_probs=154.7
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.++|...++..+...+..... ...++++.|++|+||+.+|++|+....+...+|+.+||+....
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~-----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~----- 198 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR-----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK----- 198 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC-----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-----
Confidence 488888888888877765322 3458999999999999999999998887889999999996322
Q ss_pred CCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEc
Q 005186 385 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 463 (710)
Q Consensus 385 ~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlT 463 (710)
+.+...++|+..+ |.|.. ....+.+.....++||||||+.+++.+|..|+++|++|.+...+|...--.++.||+|
T Consensus 199 -~~~~~~lfg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~ 275 (463)
T TIGR01818 199 -DLIESELFGHEKGAFTGAN--TRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAA 275 (463)
T ss_pred -HHHHHHhcCCCCCCCCCcc--cCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEe
Confidence 1223345666543 22221 0112233445578999999999999999999999999998765553322335669998
Q ss_pred cCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCCC
Q 005186 464 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 543 (710)
Q Consensus 464 SN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~ 543 (710)
|+.....
T Consensus 276 ~~~~l~~------------------------------------------------------------------------- 282 (463)
T TIGR01818 276 THQNLEA------------------------------------------------------------------------- 282 (463)
T ss_pred CCCCHHH-------------------------------------------------------------------------
Confidence 8741100
Q ss_pred hHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcce-eeecCCCC-----HHHHHHHHH
Q 005186 544 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVK-IVAFKAFN-----FDALAEKIL 617 (710)
Q Consensus 544 ~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~-iVvF~PLD-----~d~Laeiil 617 (710)
.+. ...|+++|++|+.. .|...||. ...|++.++
T Consensus 283 ------~~~----------------------------------~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l 322 (463)
T TIGR01818 283 ------LVR----------------------------------QGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFL 322 (463)
T ss_pred ------HHH----------------------------------cCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHH
Confidence 000 01678899999976 56667774 344566666
Q ss_pred HHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 618 KDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 618 ~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
+++...+.+ . ...|+++|++.|..+ .|+|+ |.|++.|++.+.
T Consensus 323 ~~~~~~~~~----~-~~~~~~~a~~~L~~~--~wpgNvreL~~~~~~~~~ 365 (463)
T TIGR01818 323 ALAARELDV----E-PKLLDPEALERLKQL--RWPGNVRQLENLCRWLTV 365 (463)
T ss_pred HHHHHHhCC----C-CCCcCHHHHHHHHhC--CCCChHHHHHHHHHHHHH
Confidence 665543321 1 146899999999995 55655 899999998874
No 46
>PRK15115 response regulator GlrR; Provisional
Probab=99.54 E-value=9.8e-14 Score=155.47 Aligned_cols=223 Identities=13% Similarity=0.152 Sum_probs=147.7
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.++|...++..+...+.... ....++++.|++|+||+.+|++|+........+|+.+||.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a-----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~----- 198 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA-----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE----- 198 (444)
T ss_pred cccccCHHHHHHHHHHHhhc-----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-----
Confidence 46777766655554443322 12348999999999999999999998877788999999996322
Q ss_pred CCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEc
Q 005186 385 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 463 (710)
Q Consensus 385 ~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlT 463 (710)
.+....++|+..+ |.|... ...+.+.....++||||||+.+++..|..|+++|++|.+....+...--.++.+|+|
T Consensus 199 -~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~ 275 (444)
T PRK15115 199 -QLLESELFGHARGAFTGAVS--NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISA 275 (444)
T ss_pred -HHHHHHhcCCCcCCCCCCcc--CCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEe
Confidence 1222345555433 222110 011223445578999999999999999999999999987543332222235679998
Q ss_pred cCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCCC
Q 005186 464 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 543 (710)
Q Consensus 464 SN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~ 543 (710)
|+..... .+ .
T Consensus 276 ~~~~l~~---------------------------~~----------------------------~--------------- 285 (444)
T PRK15115 276 THRDLPK---------------------------AM----------------------------A--------------- 285 (444)
T ss_pred CCCCHHH---------------------------HH----------------------------H---------------
Confidence 8841000 00 0
Q ss_pred hHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCccee-eecCCC-----CHHHHHHHHH
Q 005186 544 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAF-----NFDALAEKIL 617 (710)
Q Consensus 544 ~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~i-VvF~PL-----D~d~Laeiil 617 (710)
...|+++|++|+... |...|| |...|++.++
T Consensus 286 -------------------------------------------~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l 322 (444)
T PRK15115 286 -------------------------------------------RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLL 322 (444)
T ss_pred -------------------------------------------cCCccHHHHHhhceeeecCCChHhccccHHHHHHHHH
Confidence 015788889998765 444455 5566777777
Q ss_pred HHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 618 KDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 618 ~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
+++...+.+ ....++++|++.|..+ .|+|+ |.|++.|++.+.
T Consensus 323 ~~~~~~~~~-----~~~~~~~~a~~~L~~~--~WpgNvreL~~~i~~~~~ 365 (444)
T PRK15115 323 RQAAERHKP-----FVRAFSTDAMKRLMTA--SWPGNVRQLVNVIEQCVA 365 (444)
T ss_pred HHHHHHhCC-----CCCCcCHHHHHHHHhC--CCCChHHHHHHHHHHHHH
Confidence 776554432 1246899999999985 55655 899999998763
No 47
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.53 E-value=1.3e-13 Score=149.04 Aligned_cols=103 Identities=15% Similarity=0.232 Sum_probs=72.9
Q ss_pred cccccHHHHHH---HHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCC
Q 005186 305 KIDWQDEAISV---ISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 381 (710)
Q Consensus 305 ~ViGQdeAi~~---I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~ 381 (710)
+|+||++.+.. |.++|.. ....+++|+||||||||++|++||... +..|..++....
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~---- 84 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTS---- 84 (436)
T ss_pred HhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccc----
Confidence 48999988743 3333331 134599999999999999999999988 778888776631
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHHh---CCCeEEEEeccccCCHHHHHHHHhhHhCCcc
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK---KPLSVVYLENVDKADVHVQNSLSKAIQTGKL 445 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~---~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l 445 (710)
|. +.+...+.++-.. ....|||||||++.+..-|+.||..||+|.+
T Consensus 85 ------------gv------kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i 133 (436)
T COG2256 85 ------------GV------KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTI 133 (436)
T ss_pred ------------cH------HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeE
Confidence 11 1111122222111 2357999999999999999999999998864
No 48
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.50 E-value=5.6e-13 Score=153.12 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=81.5
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHH-------cCCCcceEEecCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII-------YGGKENFICADLCPQ 377 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L-------~gs~~~fI~iD~s~~ 377 (710)
.++||++++..+..++. . ..+.+++|+||+|||||++|++|++.. +..+.+|+.+||+..
T Consensus 66 ~iiGqs~~i~~l~~al~---~----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~ 132 (531)
T TIGR02902 66 EIIGQEEGIKALKAALC---G----------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTA 132 (531)
T ss_pred HeeCcHHHHHHHHHHHh---C----------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccc
Confidence 59999999988875531 1 123489999999999999999999754 223578999999731
Q ss_pred ---CCCCCCCCCcc----ccccccccc-cccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCccc
Q 005186 378 ---DGEMNNPPKFY----HQVVGGDSV-QFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 446 (710)
Q Consensus 378 ---~~e~~~~~sl~----~~~~~G~~~-~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~ 446 (710)
+..+. +.++ .+.|.|... ++.|.. ....+.+.++..+|||||||+++++..|+.|+++||++++.
T Consensus 133 ~~~~~~~~--~~li~~~~~p~~~~~~~~g~~g~~--~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~ 205 (531)
T TIGR02902 133 RFDERGIA--DPLIGSVHDPIYQGAGPLGIAGIP--QPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVF 205 (531)
T ss_pred cCCccccc--hhhcCCcccchhccccccccCCcc--cccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeee
Confidence 11010 0111 011111110 000100 11234566677899999999999999999999999988643
No 49
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.2e-12 Score=144.87 Aligned_cols=136 Identities=18% Similarity=0.143 Sum_probs=82.2
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~s~~~~e~ 381 (710)
+.|+||++++..|..++...+ -...+||+||+|+|||++|++||+.+.....+ ..+-.|..... +
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r------------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~-i 84 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK------------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE-I 84 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC------------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH-H
Confidence 459999999998888876332 23479999999999999999999998643211 00111110000 0
Q ss_pred CCCCCccccccccccc-cccccchhhHHHHHHH----hCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecC
Q 005186 382 NNPPKFYHQVVGGDSV-QFRGKTLADYVAWELL----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 456 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~-~f~G~t~~~~L~~al~----~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~ 456 (710)
.... ...++-.+. ..+|......+.+.+. ...+.|+||||||.++...+++||+.||+-. .
T Consensus 85 ~~g~---~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp-----------~ 150 (484)
T PRK14956 85 TKGI---SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP-----------A 150 (484)
T ss_pred HccC---CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC-----------C
Confidence 0000 000000000 0112111223333333 2356799999999999999999999998632 4
Q ss_pred ceEEEEccCC
Q 005186 457 NAIFVTASSF 466 (710)
Q Consensus 457 n~I~IlTSN~ 466 (710)
+++||++|+.
T Consensus 151 ~viFILaTte 160 (484)
T PRK14956 151 HIVFILATTE 160 (484)
T ss_pred ceEEEeecCC
Confidence 6789988873
No 50
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.43 E-value=2e-12 Score=144.84 Aligned_cols=146 Identities=19% Similarity=0.098 Sum_probs=102.8
Q ss_pred hHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEE
Q 005186 292 LSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 371 (710)
Q Consensus 292 ~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~ 371 (710)
.+.+..|.+.|.+.|+|++++|+.+..++. ..+++||.||||+|||++|++||..+.+.. +|..
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~ 71 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEY 71 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccC-ccee
Confidence 457889999999999999999988776653 234899999999999999999999875433 6776
Q ss_pred ecCCCCCCCCCCCCCccccccccccccccc---cchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCC
Q 005186 372 ADLCPQDGEMNNPPKFYHQVVGGDSVQFRG---KTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS 448 (710)
Q Consensus 372 iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G---~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~ 448 (710)
+.+.. .. +..++|....+.. +.+.....+.+.. ..|+|+|||.++++.+|+.|+++|+++.++.
T Consensus 72 ~~~~f-----tt-----p~DLfG~l~i~~~~~~g~f~r~~~G~L~~--A~lLfLDEI~rasp~~QsaLLeam~Er~~t~- 138 (498)
T PRK13531 72 LMTRF-----ST-----PEEVFGPLSIQALKDEGRYQRLTSGYLPE--AEIVFLDEIWKAGPAILNTLLTAINERRFRN- 138 (498)
T ss_pred eeeee-----cC-----cHHhcCcHHHhhhhhcCchhhhcCCcccc--ccEEeecccccCCHHHHHHHHHHHHhCeEec-
Confidence 66652 11 2244453211000 0000000111111 1389999999999999999999999999986
Q ss_pred CCeEeecCceEEEEccCC
Q 005186 449 YGREVSVSNAIFVTASSF 466 (710)
Q Consensus 449 ~Gr~vd~~n~I~IlTSN~ 466 (710)
.|+...+.--+||++||-
T Consensus 139 g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 139 GAHEEKIPMRLLVTASNE 156 (498)
T ss_pred CCeEEeCCCcEEEEECCC
Confidence 577777776677777784
No 51
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.5e-12 Score=149.84 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=82.2
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~s~~~~e~ 381 (710)
+.|+||+++++.|..++...+ -...+||+||+|||||++|++||+.+++.... ..+..|..+-. +
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r------------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~-i 82 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR------------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE-I 82 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC------------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH-H
Confidence 459999999999888876432 23478999999999999999999999653110 01111110000 0
Q ss_pred CCCC--CccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeec
Q 005186 382 NNPP--KFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSV 455 (710)
Q Consensus 382 ~~~~--sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~ 455 (710)
.... .++ .+.+.. .++......+.+.+.. .++.||||||+++|+...++.||+.||+-.
T Consensus 83 ~~g~~~Dvi--EidAas--~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP----------- 147 (944)
T PRK14949 83 AQGRFVDLI--EVDAAS--RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP----------- 147 (944)
T ss_pred hcCCCceEE--Eecccc--ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC-----------
Confidence 0000 000 000100 1221222334444433 346899999999999999999999999732
Q ss_pred CceEEEEccC
Q 005186 456 SNAIFVTASS 465 (710)
Q Consensus 456 ~n~I~IlTSN 465 (710)
.+++||++|+
T Consensus 148 ~~vrFILaTT 157 (944)
T PRK14949 148 EHVKFLLATT 157 (944)
T ss_pred CCeEEEEECC
Confidence 3566888766
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4.8e-12 Score=147.22 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=82.7
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC---CCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP---QDG 379 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~---~~~ 379 (710)
.+.|+||+++++.|..+|... +-...+||+||+|||||++|++||+.|+.... .-...|+. +..
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~-~~~~PCG~C~sCr~ 81 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETG-VTSQPCGVCRACRE 81 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccC-CCCCCCcccHHHHH
Confidence 345999999999888887522 22457899999999999999999999964211 00011110 000
Q ss_pred CCCCCCCccccccccccc-cccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 380 EMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~~-~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
+..... ..++-.+. ..+|..-...+.+.+.. ..+.||||||+|.++...+|.||+.||+-.
T Consensus 82 -I~~G~h---~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP---------- 147 (830)
T PRK07003 82 -IDEGRF---VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP---------- 147 (830)
T ss_pred -HhcCCC---ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC----------
Confidence 000000 00100000 01121111223333322 346899999999999999999999999742
Q ss_pred cCceEEEEccCC
Q 005186 455 VSNAIFVTASSF 466 (710)
Q Consensus 455 ~~n~I~IlTSN~ 466 (710)
.+++||++||-
T Consensus 148 -~~v~FILaTtd 158 (830)
T PRK07003 148 -PHVKFILATTD 158 (830)
T ss_pred -CCeEEEEEECC
Confidence 46789999883
No 53
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.41 E-value=1.6e-12 Score=145.26 Aligned_cols=222 Identities=15% Similarity=0.193 Sum_probs=146.6
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 385 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~ 385 (710)
++|...++..+...+.... ....+++++|++|+||+.+|++|+....+...+|+.+||+....
T Consensus 141 lig~s~~~~~~~~~i~~~~-----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~------ 203 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVA-----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE------ 203 (441)
T ss_pred eEecCHHHHHHHHHHhhcc-----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH------
Confidence 5666666666555543321 12357899999999999999999998877789999999996321
Q ss_pred Ccccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEcc
Q 005186 386 KFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTAS 464 (710)
Q Consensus 386 sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTS 464 (710)
+.+...++|+..+ |.|... .-.+.+.....++||||||+.+++.+|..|++++++|.+....+...--.++.+|+||
T Consensus 204 ~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t 281 (441)
T PRK10365 204 SLLESELFGHEKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAAT 281 (441)
T ss_pred HHHHHHhcCCCCCCcCCCCc--CCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeC
Confidence 1223345665443 222110 1112344556799999999999999999999999999876533322112245688888
Q ss_pred CCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCCCh
Q 005186 465 SFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDT 544 (710)
Q Consensus 465 N~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~~ 544 (710)
+..... . +.
T Consensus 282 ~~~~~~---------------------------~----------------------------~~---------------- 290 (441)
T PRK10365 282 HRDLAA---------------------------E----------------------------VN---------------- 290 (441)
T ss_pred CCCHHH---------------------------H----------------------------HH----------------
Confidence 741100 0 00
Q ss_pred HHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCccee-eecCCC-----CHHHHHHHHHH
Q 005186 545 SEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAF-----NFDALAEKILK 618 (710)
Q Consensus 545 ~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~i-VvF~PL-----D~d~Laeiil~ 618 (710)
...|+++|+.|+... |...|| |...|++.+++
T Consensus 291 ------------------------------------------~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~ 328 (441)
T PRK10365 291 ------------------------------------------AGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQ 328 (441)
T ss_pred ------------------------------------------cCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHH
Confidence 015778888888654 445556 55667777777
Q ss_pred HHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 619 DINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 619 ~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
++...+.+ ....++++|++.|..+.| +|+ |.|++.|++.+.
T Consensus 329 ~~~~~~~~-----~~~~~~~~a~~~L~~~~w--pgN~reL~~~~~~~~~ 370 (441)
T PRK10365 329 RFAERNRK-----AVKGFTPQAMDLLIHYDW--PGNIRELENAVERAVV 370 (441)
T ss_pred HHHHHhCC-----CCCCcCHHHHHHHHhCCC--CCHHHHHHHHHHHHHH
Confidence 76554432 124589999999999654 544 899999998653
No 54
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.40 E-value=1.3e-11 Score=131.55 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=73.5
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.++||+++++.|...+...+... .+..+++|+||+|+|||++|++||+.+ ...+..++.....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~~~----- 67 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALE----- 67 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccchhc-----
Confidence 458999999999888886554321 123479999999999999999999987 3334433332100
Q ss_pred CCCccccccccccccccccchhhHHHHHHHh-CCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
. .+.+.+.+.. ....|||||||+++++..+..|+.+|++++
T Consensus 68 ------------~--------~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~ 109 (305)
T TIGR00635 68 ------------K--------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFR 109 (305)
T ss_pred ------------C--------chhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhh
Confidence 0 0122232222 345799999999999999999999998764
No 55
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=5.6e-12 Score=145.04 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=83.8
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc---c-e---EEecCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE---N-F---ICADLC 375 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~---~-f---I~iD~s 375 (710)
.++|+||+++++.|..++...+ -.+.+||+||+|+|||++|++||+.|..... . . -+..|.
T Consensus 15 FddVIGQe~vv~~L~~al~~gR------------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR------------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC------------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 3559999999999988886443 2357899999999999999999999965210 0 0 011111
Q ss_pred CCCCCCCCCCCcccccccccccc-ccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG 450 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G 450 (710)
.+.. +.... .+.++-.+.. .+|..-+..+.+.+.. ..+.|+||||+|.|+...+|.||+.||+--
T Consensus 83 sC~~-I~aG~---hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP------ 152 (700)
T PRK12323 83 ACTE-IDAGR---FVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP------ 152 (700)
T ss_pred HHHH-HHcCC---CCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC------
Confidence 0000 00000 0001100000 1121112233333332 346899999999999999999999999731
Q ss_pred eEeecCceEEEEccCC
Q 005186 451 REVSVSNAIFVTASSF 466 (710)
Q Consensus 451 r~vd~~n~I~IlTSN~ 466 (710)
.+++||++||-
T Consensus 153 -----~~v~FILaTte 163 (700)
T PRK12323 153 -----EHVKFILATTD 163 (700)
T ss_pred -----CCceEEEEeCC
Confidence 46789998883
No 56
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=8.4e-12 Score=143.90 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=80.7
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecC---CCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADL---CPQD 378 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~---s~~~ 378 (710)
+.|+||+++++.|..++... +....+||+||+|+|||++|++||+.+...... -.+-.| ....
T Consensus 15 ddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 45999999999998888632 234589999999999999999999998542110 001111 1100
Q ss_pred -CCCCCCCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEe
Q 005186 379 -GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 379 -~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
+.+.+ ++ .+.+.+ .++..-...+.+.+.. ..+.|+||||+|.++...++.|++.||+..
T Consensus 83 ~g~hpD---vi--EIDAAs--~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP--------- 146 (702)
T PRK14960 83 EGRFID---LI--EIDAAS--RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP--------- 146 (702)
T ss_pred cCCCCc---eE--Eecccc--cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC---------
Confidence 00000 10 000000 0111111222232222 346799999999999999999999999632
Q ss_pred ecCceEEEEccC
Q 005186 454 SVSNAIFVTASS 465 (710)
Q Consensus 454 d~~n~I~IlTSN 465 (710)
.+++||++|+
T Consensus 147 --~~v~FILaTt 156 (702)
T PRK14960 147 --EHVKFLFATT 156 (702)
T ss_pred --CCcEEEEEEC
Confidence 3567888876
No 57
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.37 E-value=6.1e-12 Score=129.23 Aligned_cols=133 Identities=18% Similarity=0.141 Sum_probs=87.4
Q ss_pred hcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCC
Q 005186 302 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 381 (710)
Q Consensus 302 L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~ 381 (710)
-.+.|+||++|+..-. .|..... .|..-..=.+-++||+||+|+|||+||++||... ..||+.+.....-
T Consensus 119 t~ddViGqEeAK~kcr-li~~yLe---nPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~l~vkat~li--- 188 (368)
T COG1223 119 TLDDVIGQEEAKRKCR-LIMEYLE---NPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATELI--- 188 (368)
T ss_pred cHhhhhchHHHHHHHH-HHHHHhh---ChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCceEEechHHHH---
Confidence 3567999999986532 3322211 1100000123489999999999999999999987 7899988777421
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC------------HHHHHHHHhhHhCCcccCCC
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD------------VHVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~------------~~vqn~LLq~LE~G~l~d~~ 449 (710)
.+++|. |...+..+++..++...+||||||+|.+. .++.|+||.-|+.-. .+
T Consensus 189 --------GehVGd-----gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--en- 252 (368)
T COG1223 189 --------GEHVGD-----GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--EN- 252 (368)
T ss_pred --------HHHhhh-----HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cC-
Confidence 123332 22334456666677777999999999864 267888888886322 12
Q ss_pred CeEeecCceEEEEccCC
Q 005186 450 GREVSVSNAIFVTASSF 466 (710)
Q Consensus 450 Gr~vd~~n~I~IlTSN~ 466 (710)
..+..|++||.
T Consensus 253 ------eGVvtIaaTN~ 263 (368)
T COG1223 253 ------EGVVTIAATNR 263 (368)
T ss_pred ------CceEEEeecCC
Confidence 24668888884
No 58
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.1e-11 Score=141.55 Aligned_cols=132 Identities=19% Similarity=0.182 Sum_probs=81.8
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecCCCC----
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADLCPQ---- 377 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~s~~---- 377 (710)
+.|+||+++++.|..++...+ -.+.+||+||+|+|||++|++||+.+...... -.+-.|..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~------------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 83 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY------------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC------------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh
Confidence 459999999999988886432 24579999999999999999999999643211 000111100
Q ss_pred CCCCCCCCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEe
Q 005186 378 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 378 ~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
.+.+.+... +.+. ..+|-.-...+.+.+.. .++.|+||||+|.++...+|+|++.||+--
T Consensus 84 ~g~~~d~~e-----idaa--s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp--------- 147 (509)
T PRK14958 84 EGRFPDLFE-----VDAA--SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP--------- 147 (509)
T ss_pred cCCCceEEE-----Eccc--ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC---------
Confidence 000110000 0000 01111111223333332 346799999999999999999999999731
Q ss_pred ecCceEEEEccC
Q 005186 454 SVSNAIFVTASS 465 (710)
Q Consensus 454 d~~n~I~IlTSN 465 (710)
.+++||++|+
T Consensus 148 --~~~~fIlatt 157 (509)
T PRK14958 148 --SHVKFILATT 157 (509)
T ss_pred --CCeEEEEEEC
Confidence 3577888775
No 59
>PLN03025 replication factor C subunit; Provisional
Probab=99.37 E-value=1e-11 Score=134.12 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=77.1
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCC--cceEEecCCCCCCCCCC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK--ENFICADLCPQDGEMNN 383 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~--~~fI~iD~s~~~~e~~~ 383 (710)
|+||++++..|...+... ...+++|+||+|+|||++|+++|+.+++.. ..++.++.+..
T Consensus 15 ~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~------ 75 (319)
T PLN03025 15 IVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD------ 75 (319)
T ss_pred hcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc------
Confidence 889999988876654321 122699999999999999999999997653 22444443320
Q ss_pred CCCccccccccccccccccchhhHHHHHHH-------hCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecC
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELL-------KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 456 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~-------~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~ 456 (710)
+|......+...+. ...+.||+|||+|.+....|+.|++.||.-. .
T Consensus 76 ----------------~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-----------~ 128 (319)
T PLN03025 76 ----------------RGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS-----------N 128 (319)
T ss_pred ----------------ccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc-----------C
Confidence 11111111111111 1246799999999999999999999998421 2
Q ss_pred ceEEEEccCC
Q 005186 457 NAIFVTASSF 466 (710)
Q Consensus 457 n~I~IlTSN~ 466 (710)
++.||+++|.
T Consensus 129 ~t~~il~~n~ 138 (319)
T PLN03025 129 TTRFALACNT 138 (319)
T ss_pred CceEEEEeCC
Confidence 3568888883
No 60
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.37 E-value=3.2e-11 Score=130.62 Aligned_cols=105 Identities=14% Similarity=0.099 Sum_probs=74.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.++||++.+..+...+...+... .+..+++|+||+|+|||++|+++|+.+ ...+..++.....
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~----- 88 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRG--------EALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALE----- 88 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcC--------CCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEeccccc-----
Confidence 448999999999988887654311 234589999999999999999999988 3344433332100
Q ss_pred CCCccccccccccccccccchhhHHHHHHHh-CCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
.. +.+...+.. ....|||||||+.++...++.|+.+|++..
T Consensus 89 ------------~~--------~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~ 130 (328)
T PRK00080 89 ------------KP--------GDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFR 130 (328)
T ss_pred ------------Ch--------HHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcc
Confidence 00 122222222 356899999999999999999999998764
No 61
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.35 E-value=2.2e-11 Score=127.96 Aligned_cols=132 Identities=16% Similarity=0.232 Sum_probs=87.9
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc---
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE--- 367 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~--- 367 (710)
+.++.+.+. .+.||++++..+..++.+ +. ..++||+||+|||||..|+++|+.+++.+.
T Consensus 28 eKYrPkt~d-----e~~gQe~vV~~L~~a~~~-~~------------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~ 89 (346)
T KOG0989|consen 28 EKYRPKTFD-----ELAGQEHVVQVLKNALLR-RI------------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPC 89 (346)
T ss_pred HHhCCCcHH-----hhcchHHHHHHHHHHHhh-cC------------CceEEeeCCCCCcHhHHHHHHHHHhcCcccccc
Confidence 555555554 499999999999998875 22 238999999999999999999999987211
Q ss_pred ceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHH------HhCCCeEEEEeccccCCHHHHHHHHhhHh
Q 005186 368 NFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL------LKKPLSVVYLENVDKADVHVQNSLSKAIQ 441 (710)
Q Consensus 368 ~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al------~~~p~sVI~LDEIDKa~~~vqn~LLq~LE 441 (710)
.+...+.+...+ .++.+....++ ..+.... ...|+.||+|||.|-|..+.|++|.+.||
T Consensus 90 rvl~lnaSderG-----isvvr~Kik~f----------akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE 154 (346)
T KOG0989|consen 90 RVLELNASDERG-----ISVVREKIKNF----------AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME 154 (346)
T ss_pred chhhhccccccc-----ccchhhhhcCH----------HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh
Confidence 112223332111 11111111111 1111111 12457899999999999999999999999
Q ss_pred CCcccCCCCeEeecCceEEEEccCC
Q 005186 442 TGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 442 ~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
+-. +.++||+-+|.
T Consensus 155 ~~s-----------~~trFiLIcny 168 (346)
T KOG0989|consen 155 DFS-----------RTTRFILICNY 168 (346)
T ss_pred ccc-----------cceEEEEEcCC
Confidence 621 46889999996
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=3.6e-11 Score=132.15 Aligned_cols=132 Identities=17% Similarity=0.149 Sum_probs=79.7
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc----ceE-EecCCCC-
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFI-CADLCPQ- 377 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~----~fI-~iD~s~~- 377 (710)
+.|+||+++++.+..++... +-...++|+||+|+|||++|+++|+.+.+... +.- +..|...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 55999999999888777532 22457899999999999999999999863211 100 0011100
Q ss_pred CCCCCCCCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEe
Q 005186 378 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 378 ~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
.+.+.+ +. .+.+.. ..+......+.+.+... .+.||||||+|+++...++.|++.||+..
T Consensus 84 ~~~~~d---~~--~~~~~~--~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~--------- 147 (363)
T PRK14961 84 KGLCLD---LI--EIDAAS--RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP--------- 147 (363)
T ss_pred cCCCCc---eE--Eecccc--cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC---------
Confidence 000000 00 000000 01111122334444333 35699999999999999999999999732
Q ss_pred ecCceEEEEccC
Q 005186 454 SVSNAIFVTASS 465 (710)
Q Consensus 454 d~~n~I~IlTSN 465 (710)
.+++||++|+
T Consensus 148 --~~~~fIl~t~ 157 (363)
T PRK14961 148 --QHIKFILATT 157 (363)
T ss_pred --CCeEEEEEcC
Confidence 2566888775
No 63
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=2.6e-11 Score=141.11 Aligned_cols=133 Identities=16% Similarity=0.165 Sum_probs=82.6
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc--ceEEecCCC---C
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE--NFICADLCP---Q 377 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~--~fI~iD~s~---~ 377 (710)
.+.|+||+++++.|..++...+ -...+||+||+|+|||++|+++|+.+..... ..-+..|.. .
T Consensus 15 f~divGQe~vv~~L~~~l~~~r------------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR------------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 4569999999998888876432 2347899999999999999999999965311 001111110 0
Q ss_pred -CCCCCCCCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeE
Q 005186 378 -DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 378 -~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
.+.|.+... +.+.. ..+......+.+.+.. .++.|+||||+|+++...+|.||+.||+--
T Consensus 83 ~~g~~~D~ie-----idaas--~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp-------- 147 (647)
T PRK07994 83 EQGRFVDLIE-----IDAAS--RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------- 147 (647)
T ss_pred HcCCCCCcee-----ecccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC--------
Confidence 000111000 00000 1111112233333332 356799999999999999999999999731
Q ss_pred eecCceEEEEccC
Q 005186 453 VSVSNAIFVTASS 465 (710)
Q Consensus 453 vd~~n~I~IlTSN 465 (710)
.+++||++|+
T Consensus 148 ---~~v~FIL~Tt 157 (647)
T PRK07994 148 ---EHVKFLLATT 157 (647)
T ss_pred ---CCeEEEEecC
Confidence 3577888776
No 64
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.9e-11 Score=139.76 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=82.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcce--EEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF--ICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~f--I~iD~s~~~~e~ 381 (710)
+.|+||+++++.|..++... +-.+.+||+||+|+|||++|++||+.++....+- -+-.|..+.. +
T Consensus 13 ~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~-i 79 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVA-L 79 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHH-h
Confidence 45999999999988887632 2345799999999999999999999997432110 1111111000 0
Q ss_pred CC----CCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEe
Q 005186 382 NN----PPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 382 ~~----~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
.. ...++ ..-+.. ..|-.....+.+.+.. .++.||||||++.++...+|.||+.||+--
T Consensus 80 ~~~~~~~~dvi--eidaas--~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp--------- 146 (584)
T PRK14952 80 APNGPGSIDVV--ELDAAS--HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP--------- 146 (584)
T ss_pred hcccCCCceEE--Eecccc--ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC---------
Confidence 00 00010 000100 0121112233333332 457899999999999999999999999721
Q ss_pred ecCceEEEEccC
Q 005186 454 SVSNAIFVTASS 465 (710)
Q Consensus 454 d~~n~I~IlTSN 465 (710)
.+++||++|+
T Consensus 147 --~~~~fIL~tt 156 (584)
T PRK14952 147 --EHLIFIFATT 156 (584)
T ss_pred --CCeEEEEEeC
Confidence 3678888776
No 65
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=1.5e-11 Score=147.06 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=81.6
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecCCCCC---
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADLCPQD--- 378 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~s~~~--- 378 (710)
++||||+++++.|..+|...+ -...+||+||+|||||++|++||+.|+....+ --+-.|..+.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r------------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR------------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 459999999999888876422 23479999999999999999999999642110 0111111100
Q ss_pred C-CCCCCCCccccccccccccccccchhhHHHHHHH----hCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEe
Q 005186 379 G-EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 379 ~-e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~----~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
. .+.. ..++ .+.+... .|...+..+.+.+. ...+.||||||+|+|+...+|.||++||+--
T Consensus 83 ~g~~~~-~dv~--eidaas~--~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP--------- 148 (824)
T PRK07764 83 PGGPGS-LDVT--EIDAASH--GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP--------- 148 (824)
T ss_pred cCCCCC-CcEE--Eeccccc--CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC---------
Confidence 0 0000 0010 0111000 11111122222222 3457899999999999999999999999721
Q ss_pred ecCceEEEEccC
Q 005186 454 SVSNAIFVTASS 465 (710)
Q Consensus 454 d~~n~I~IlTSN 465 (710)
.+++|||+|+
T Consensus 149 --~~~~fIl~tt 158 (824)
T PRK07764 149 --EHLKFIFATT 158 (824)
T ss_pred --CCeEEEEEeC
Confidence 3678888776
No 66
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.34 E-value=2.3e-11 Score=135.88 Aligned_cols=105 Identities=13% Similarity=0.209 Sum_probs=72.2
Q ss_pred cccccHHHHHH---HHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCC
Q 005186 305 KIDWQDEAISV---ISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 381 (710)
Q Consensus 305 ~ViGQdeAi~~---I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~ 381 (710)
.++||++++.. +...+... ...+++|+||+|||||++|++||+.+ ...|+.+++...
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~-------------~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~---- 72 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG-------------RLSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTS---- 72 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC-------------CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccc----
Confidence 49999998766 65555311 22379999999999999999999987 567888776531
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
|.. .. .................|||||||+++....|+.|+..|++|.
T Consensus 73 ------------~~~-~i--r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~ 120 (413)
T PRK13342 73 ------------GVK-DL--REVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT 120 (413)
T ss_pred ------------cHH-HH--HHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc
Confidence 000 00 0001111111122356899999999999999999999998753
No 67
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.7e-11 Score=140.62 Aligned_cols=133 Identities=17% Similarity=0.198 Sum_probs=82.1
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc---------ce-EEe
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE---------NF-ICA 372 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~---------~f-I~i 372 (710)
.+.|+||+++++.|..++...+ -...+||+||+|+|||++|++||+.++.... ++ .+-
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r------------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR------------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 3458999999998888876432 2358999999999999999999999964211 00 000
Q ss_pred cCCCCCCCCCCCCCcccccccccccc-ccccchhhHHHHHHHhCC----CeEEEEeccccCCHHHHHHHHhhHhCCcccC
Q 005186 373 DLCPQDGEMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKP----LSVVYLENVDKADVHVQNSLSKAIQTGKLPD 447 (710)
Q Consensus 373 D~s~~~~e~~~~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p----~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d 447 (710)
.|...+. .. .+.++-.+.. .+|..-...+.+.+...| +.|++|||+|.++...+|.|++.||+--
T Consensus 83 ~C~~i~~-g~------h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP--- 152 (618)
T PRK14951 83 ACRDIDS-GR------FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP--- 152 (618)
T ss_pred HHHHHHc-CC------CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC---
Confidence 1111000 00 0011101100 112111223334443333 6899999999999999999999999731
Q ss_pred CCCeEeecCceEEEEccC
Q 005186 448 SYGREVSVSNAIFVTASS 465 (710)
Q Consensus 448 ~~Gr~vd~~n~I~IlTSN 465 (710)
.+++||++|+
T Consensus 153 --------~~~~fIL~Tt 162 (618)
T PRK14951 153 --------EYLKFVLATT 162 (618)
T ss_pred --------CCeEEEEEEC
Confidence 3567888775
No 68
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=3e-11 Score=138.53 Aligned_cols=135 Identities=15% Similarity=0.131 Sum_probs=80.9
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~s~~~~e~ 381 (710)
+.|+||++++..|..++... +....+||+||+|+|||++|++||+.+...... -.+..|..+.. +
T Consensus 16 ~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~-i 82 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVA-I 82 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH-H
Confidence 45999999999888877532 234579999999999999999999988642110 00111110000 0
Q ss_pred CCCCCccccccccccc-cccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecC
Q 005186 382 NNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 456 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~-~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~ 456 (710)
.... .+.++..+. ...|..-...+.+.+.. ..+.||||||+|+++...++.|++.||+.- .
T Consensus 83 ~~~~---~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-----------~ 148 (546)
T PRK14957 83 NNNS---FIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-----------E 148 (546)
T ss_pred hcCC---CCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC-----------C
Confidence 0000 000000000 01111112233344333 346799999999999999999999999742 3
Q ss_pred ceEEEEccC
Q 005186 457 NAIFVTASS 465 (710)
Q Consensus 457 n~I~IlTSN 465 (710)
.++||++|+
T Consensus 149 ~v~fIL~Tt 157 (546)
T PRK14957 149 YVKFILATT 157 (546)
T ss_pred CceEEEEEC
Confidence 566787775
No 69
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.7e-11 Score=137.23 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=78.6
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC------C
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP------Q 377 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~------~ 377 (710)
+.|+||++++..|..++... +....++|+||+|+|||++|+++|+.+........ ..|.. .
T Consensus 14 ~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~-~pc~~c~~c~~i 80 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGV-EPCNECRACRSI 80 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC-CCCcccHHHHHH
Confidence 44999999988877766532 23357999999999999999999999864321100 00100 0
Q ss_pred C-CCCCCCCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeE
Q 005186 378 D-GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 378 ~-~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
. +.+..... +.+. ..+|......+.+.+... .+.||||||++.+....++.|++.|++..
T Consensus 81 ~~g~~~dv~e-----l~aa--~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~-------- 145 (472)
T PRK14962 81 DEGTFMDVIE-----LDAA--SNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP-------- 145 (472)
T ss_pred hcCCCCccEE-----EeCc--ccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC--------
Confidence 0 00000000 0000 012221122333443333 35799999999999999999999998621
Q ss_pred eecCceEEEEccC
Q 005186 453 VSVSNAIFVTASS 465 (710)
Q Consensus 453 vd~~n~I~IlTSN 465 (710)
.+++||++|+
T Consensus 146 ---~~vv~Ilatt 155 (472)
T PRK14962 146 ---SHVVFVLATT 155 (472)
T ss_pred ---CcEEEEEEeC
Confidence 2466777665
No 70
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.3e-11 Score=140.51 Aligned_cols=135 Identities=17% Similarity=0.169 Sum_probs=82.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc--ceEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE--NFICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~--~fI~iD~s~~~~e~ 381 (710)
+.|+||+.++..|.+++...+ -...+||+||+|+|||++|++||+.++.... ...+-.|..+..-.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r------------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR------------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC------------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 348999999988888876322 2348999999999999999999999964211 00111111000000
Q ss_pred CCCC-CccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecC
Q 005186 382 NNPP-KFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 456 (710)
Q Consensus 382 ~~~~-sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~ 456 (710)
...| .+. .+.+.. .++......|.+.+.. ..+.||||||+|+++...++.|+++||+-. .
T Consensus 84 ~g~hpDv~--eId~a~--~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-----------~ 148 (624)
T PRK14959 84 QGMHVDVV--EIDGAS--NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP-----------A 148 (624)
T ss_pred cCCCCceE--EEeccc--ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-----------C
Confidence 0000 010 001110 1122222334444443 346899999999999999999999999731 3
Q ss_pred ceEEEEccC
Q 005186 457 NAIFVTASS 465 (710)
Q Consensus 457 n~I~IlTSN 465 (710)
+++||++||
T Consensus 149 ~~ifILaTt 157 (624)
T PRK14959 149 RVTFVLATT 157 (624)
T ss_pred CEEEEEecC
Confidence 577888777
No 71
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=3.1e-11 Score=136.66 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=80.9
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcce--EEecCC---CCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF--ICADLC---PQD 378 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~f--I~iD~s---~~~ 378 (710)
+.|+||+++++.+..++... |-...+||+||+|+|||++|++||+.+.....+- .+-.|. ...
T Consensus 13 ~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~ 80 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIK 80 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHh
Confidence 45999999998887776532 2345899999999999999999999884211110 000110 000
Q ss_pred CCCCCCCCccccccccccccccccchhhHHHHHHHhCC----CeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 379 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKP----LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 379 ~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p----~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
. ... ..++ ++-+. ..+|..-...+.+.+...| +.|++|||++.++...+|.|++.||+-.
T Consensus 81 ~-~~~-~Dv~--eidaa--s~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp---------- 144 (491)
T PRK14964 81 N-SNH-PDVI--EIDAA--SNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA---------- 144 (491)
T ss_pred c-cCC-CCEE--EEecc--cCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC----------
Confidence 0 000 0000 00000 0112111233444444443 5799999999999999999999999732
Q ss_pred cCceEEEEccC
Q 005186 455 VSNAIFVTASS 465 (710)
Q Consensus 455 ~~n~I~IlTSN 465 (710)
..++||++|+
T Consensus 145 -~~v~fIlatt 154 (491)
T PRK14964 145 -PHVKFILATT 154 (491)
T ss_pred -CCeEEEEEeC
Confidence 3577888876
No 72
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.33 E-value=6.1e-11 Score=123.53 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=79.7
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.++||+++++.+.-.|+.++... ...-++||+||||.|||+||..||+.| +.++-.......+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~le----- 89 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALE----- 89 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEeccccccc-----
Confidence 458999999999999988776521 244599999999999999999999999 3333222111100
Q ss_pred CCCccccccccccccccccchhhHHHHHHHh-CCCeEEEEeccccCCHHHHHHHHhhHhCCcc
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGKL 445 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l 445 (710)
. -+.|...+.. .++.|+|||||+++++.+-..|+.+||+.++
T Consensus 90 ------------K--------~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~l 132 (332)
T COG2255 90 ------------K--------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRL 132 (332)
T ss_pred ------------C--------hhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeE
Confidence 0 1344555543 6788999999999999999999999998765
No 73
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=7.6e-11 Score=136.33 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=83.6
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCC--C
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG--E 380 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~--e 380 (710)
.+.|+||+++++.+..++... +....+||+||+|+|||++|+.+|+.+.....+- ...|+.+.. .
T Consensus 15 f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-~~pC~~C~~C~~ 81 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-GEPCNECEICKA 81 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCccHHHHH
Confidence 456999999999988887642 2345899999999999999999999986432110 001111000 0
Q ss_pred CCCC--CCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 381 MNNP--PKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 381 ~~~~--~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
+... ..++ .+-+. ...|-.....+.+.+... ++.|++|||+|.+....++.|++.||+-.
T Consensus 82 i~~g~~~dv~--eidaa--s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp---------- 147 (559)
T PRK05563 82 ITNGSLMDVI--EIDAA--SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP---------- 147 (559)
T ss_pred HhcCCCCCeE--Eeecc--ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC----------
Confidence 0000 0000 00000 011212223444544433 46799999999999999999999998641
Q ss_pred cCceEEEEccC
Q 005186 455 VSNAIFVTASS 465 (710)
Q Consensus 455 ~~n~I~IlTSN 465 (710)
.+++||++|+
T Consensus 148 -~~~ifIlatt 157 (559)
T PRK05563 148 -AHVIFILATT 157 (559)
T ss_pred -CCeEEEEEeC
Confidence 3578888776
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=4.9e-11 Score=138.66 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=81.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCC------
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ------ 377 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~------ 377 (710)
+.|+||+++++.|..++... +....+||+||+|+|||++|++||+.+...... ...-|..+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~-~~~pCg~C~sCr~i 82 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ-HGEPCGVCQSCTQI 82 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCCCCcccHHHHHH
Confidence 45999999999988887642 234589999999999999999999998643210 00011110
Q ss_pred C-CCCCCCCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeE
Q 005186 378 D-GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 378 ~-~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
. +.+.+ ++ .+.+. ..+|...+..+.+.+.. ..+.||||||+|+++...++.|++.||+-.
T Consensus 83 ~~g~~~D---vl--EidaA--s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp-------- 147 (709)
T PRK08691 83 DAGRYVD---LL--EIDAA--SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP-------- 147 (709)
T ss_pred hccCccc---eE--EEecc--ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC--------
Confidence 0 00000 00 00000 01121112223332222 346899999999999999999999999621
Q ss_pred eecCceEEEEccC
Q 005186 453 VSVSNAIFVTASS 465 (710)
Q Consensus 453 vd~~n~I~IlTSN 465 (710)
.+++||++||
T Consensus 148 ---~~v~fILaTt 157 (709)
T PRK08691 148 ---EHVKFILATT 157 (709)
T ss_pred ---CCcEEEEEeC
Confidence 3567888886
No 75
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=6.8e-11 Score=137.20 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=83.9
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecCC---CC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADLC---PQ 377 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~s---~~ 377 (710)
.+.|+||+++++.|..++... +-...+||+||+|+|||++|++||+.++..... --+-.|. ..
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 356999999999988887642 234579999999999999999999998643210 0011111 00
Q ss_pred CCCCCCCCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEe
Q 005186 378 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 378 ~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
.. .... .++ .+.|.. ..|-.-...+.+.+... ++.|+||||+|+++...+|.|+++||+--
T Consensus 83 ~~-g~~~-d~~--eid~~s--~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp--------- 147 (576)
T PRK14965 83 TE-GRSV-DVF--EIDGAS--NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP--------- 147 (576)
T ss_pred hc-CCCC-Cee--eeeccC--ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCC---------
Confidence 00 0000 000 011111 11111123444555444 46799999999999999999999999731
Q ss_pred ecCceEEEEccC
Q 005186 454 SVSNAIFVTASS 465 (710)
Q Consensus 454 d~~n~I~IlTSN 465 (710)
.+++||++||
T Consensus 148 --~~~~fIl~t~ 157 (576)
T PRK14965 148 --PHVKFIFATT 157 (576)
T ss_pred --CCeEEEEEeC
Confidence 3678888886
No 76
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.28 E-value=9.4e-11 Score=138.65 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=69.4
Q ss_pred cccccHHHHHH---HHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCC
Q 005186 305 KIDWQDEAISV---ISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 381 (710)
Q Consensus 305 ~ViGQdeAi~~---I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~ 381 (710)
.++||++.+.. +.+.+. . ....+++|+||+|||||++|++||+.+ ...|+.+++...
T Consensus 29 d~vGQe~ii~~~~~L~~~i~---~----------~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~~---- 88 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIK---A----------DRVGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVLA---- 88 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHh---c----------CCCceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhhh----
Confidence 48899998853 333332 1 123489999999999999999999987 566777776521
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHHh-CCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
|... . ......+...+.. ....||||||||.++...|+.|++.+++|.
T Consensus 89 ------------~i~d-i--r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~ 137 (725)
T PRK13341 89 ------------GVKD-L--RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT 137 (725)
T ss_pred ------------hhHH-H--HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce
Confidence 0000 0 0001111111211 245799999999999999999999998653
No 77
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1.7e-10 Score=131.77 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=81.0
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc-----eEEecCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN-----FICADLCPQD 378 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~-----fI~iD~s~~~ 378 (710)
+.|+||++++..+..++...+ -...+||+||+|+|||++|++||+.+++.... ..+-.|....
T Consensus 14 deiiGqe~v~~~L~~~I~~gr------------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR------------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC------------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 349999999998888875322 34578999999999999999999999743211 1111111100
Q ss_pred CCCCCCCCccccccccccccccccchhhHHHHHHHh-------CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCe
Q 005186 379 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK-------KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGR 451 (710)
Q Consensus 379 ~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-------~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr 451 (710)
..+ |. .-+.+.....+|. +.+.+.+.. .++.|++|||+|.++.+.+++|++.||+-.
T Consensus 82 ~~~---h~---dv~eldaas~~gI---d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp------- 145 (535)
T PRK08451 82 ENR---HI---DIIEMDAASNRGI---DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP------- 145 (535)
T ss_pred hcC---CC---eEEEeccccccCH---HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC-------
Confidence 000 00 0000000001121 233333322 346799999999999999999999999731
Q ss_pred EeecCceEEEEccC
Q 005186 452 EVSVSNAIFVTASS 465 (710)
Q Consensus 452 ~vd~~n~I~IlTSN 465 (710)
.+++||++++
T Consensus 146 ----~~t~FIL~tt 155 (535)
T PRK08451 146 ----SYVKFILATT 155 (535)
T ss_pred ----CceEEEEEEC
Confidence 3577888775
No 78
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.26 E-value=7.7e-11 Score=137.69 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=79.1
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC-------CCcceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG-------GKENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g-------s~~~fI~iD~s~ 376 (710)
..++||+.++..+...+. . . .+.+++|+||+|||||++|++|++.... .+.+|+.+||..
T Consensus 154 ~~iiGqs~~~~~l~~~ia---~----~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVA---S----P------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred HhceeCcHHHHHHHHHHh---c----C------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 358999999988755542 1 0 1237999999999999999999987631 246799999875
Q ss_pred CCCCCCCCCCcccccccccccc--ccccc-------hhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcc
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQ--FRGKT-------LADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKL 445 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~--f~G~t-------~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l 445 (710)
.... ...+ ...++|.... +.+.. ......+.+.....+||||||++.+++..|+.|+++|+++++
T Consensus 221 l~~d---~~~i-~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v 294 (615)
T TIGR02903 221 LRWD---PREV-TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRV 294 (615)
T ss_pred ccCC---HHHH-hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeE
Confidence 3210 0000 0112221100 00000 000111223344568999999999999999999999998764
No 79
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=8.3e-11 Score=137.78 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=85.2
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
.+.|+||+.+++.|..++...+ ....+||+||+|+|||++|+++|+.+.........--|..+.. ..
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r------------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~-~~ 83 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK------------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE-NV 83 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH-hh
Confidence 3459999999999888886332 3458999999999999999999999865322111011111100 00
Q ss_pred CCCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCce
Q 005186 383 NPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNA 458 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~ 458 (710)
..+ +.-+.+...+..|......+.+.+... ++.|++|||+|.+....+++|++.||+-. ..+
T Consensus 84 ~~~---~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP-----------~~t 149 (725)
T PRK07133 84 NNS---LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP-----------KHV 149 (725)
T ss_pred cCC---CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC-----------Cce
Confidence 000 000001111112222234555666544 46799999999999999999999999641 356
Q ss_pred EEEEccC
Q 005186 459 IFVTASS 465 (710)
Q Consensus 459 I~IlTSN 465 (710)
+||++|+
T Consensus 150 ifILaTt 156 (725)
T PRK07133 150 IFILATT 156 (725)
T ss_pred EEEEEcC
Confidence 7888775
No 80
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=2.3e-10 Score=130.52 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=80.8
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc----c-----eEEecC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----N-----FICADL 374 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~----~-----fI~iD~ 374 (710)
..++||+++++.+..++... +-...+||+||+|+|||++|++||+.+..... + ..+-.|
T Consensus 21 ~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 34899999999888777532 23458999999999999999999999853211 0 011111
Q ss_pred CCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC
Q 005186 375 CPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG 450 (710)
Q Consensus 375 s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G 450 (710)
..... .... .+. .+.+. ...|..-+..+.+.+... .+.||||||++.++...++.|++.||+..
T Consensus 89 ~~i~~-~~h~-Dv~--eidaa--s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp------ 156 (507)
T PRK06645 89 ISFNN-HNHP-DII--EIDAA--SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP------ 156 (507)
T ss_pred HHHhc-CCCC-cEE--Eeecc--CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC------
Confidence 11100 0000 000 00000 011211122333444333 46799999999999999999999999631
Q ss_pred eEeecCceEEEEccC
Q 005186 451 REVSVSNAIFVTASS 465 (710)
Q Consensus 451 r~vd~~n~I~IlTSN 465 (710)
..++||++|+
T Consensus 157 -----~~~vfI~aTt 166 (507)
T PRK06645 157 -----PHIIFIFATT 166 (507)
T ss_pred -----CCEEEEEEeC
Confidence 3577888775
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.3e-10 Score=130.62 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=81.5
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc-ceEEecCCC---CCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE-NFICADLCP---QDG 379 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~-~fI~iD~s~---~~~ 379 (710)
+.|+||+++++.|..++...+ ....+||+||+|+|||++|+++|+.+...+. ...+..|.. ...
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~------------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~ 81 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR------------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRR 81 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC------------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhc
Confidence 349999999998888876422 2357899999999999999999999863211 111111111 000
Q ss_pred CCCCCCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeec
Q 005186 380 EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSV 455 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~ 455 (710)
.... .+. .+.+. ...+......+.+.+.. ..+.||||||++.+....++.|++.|++..
T Consensus 82 -~~h~-dv~--el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~----------- 144 (504)
T PRK14963 82 -GAHP-DVL--EIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP----------- 144 (504)
T ss_pred -CCCC-ceE--Eeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-----------
Confidence 0000 000 00000 11122222334444443 345799999999999999999999999631
Q ss_pred CceEEEEccC
Q 005186 456 SNAIFVTASS 465 (710)
Q Consensus 456 ~n~I~IlTSN 465 (710)
.+++||+++|
T Consensus 145 ~~t~~Il~t~ 154 (504)
T PRK14963 145 EHVIFILATT 154 (504)
T ss_pred CCEEEEEEcC
Confidence 3567888776
No 82
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.8e-10 Score=128.23 Aligned_cols=133 Identities=15% Similarity=0.139 Sum_probs=79.9
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc----eE---EecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN----FI---CADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~----fI---~iD~s~ 376 (710)
+.|+||+.+++.|..++... +-...+||+||+|+|||++|+++|+.++..... +. .--|+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred hhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 45999999999887777532 234579999999999999999999999653100 00 001111
Q ss_pred C------CCCCCCCCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCccc
Q 005186 377 Q------DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLP 446 (710)
Q Consensus 377 ~------~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~ 446 (710)
+ .. ..+.+ +. .+.|.. ..+...+..+.+.+... ++.||||||+++++...++.|+++||+..
T Consensus 84 c~~c~~~~~-~~~~n-~~--~~~~~~--~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~-- 155 (397)
T PRK14955 84 CESCRDFDA-GTSLN-IS--EFDAAS--NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP-- 155 (397)
T ss_pred CHHHHHHhc-CCCCC-eE--eecccc--cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC--
Confidence 0 00 00000 00 001100 01111122334444333 46799999999999999999999998531
Q ss_pred CCCCeEeecCceEEEEccC
Q 005186 447 DSYGREVSVSNAIFVTASS 465 (710)
Q Consensus 447 d~~Gr~vd~~n~I~IlTSN 465 (710)
..++||++++
T Consensus 156 ---------~~t~~Il~t~ 165 (397)
T PRK14955 156 ---------PHAIFIFATT 165 (397)
T ss_pred ---------CCeEEEEEeC
Confidence 2566777664
No 83
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.24 E-value=3.8e-11 Score=126.25 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=77.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccc----------------
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKT---------------- 403 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t---------------- 403 (710)
+++|.||+|||||++|++||..+ +.+++.++|..... +..++|...++....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~~---------~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAELT---------TSDLVGSYAGYTRKKVHDQFIHNVVKLEDIV 90 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccCC---------HHHHhhhhcccchhhHHHHHHHHhhhhhccc
Confidence 79999999999999999999977 67899998885211 112222211111000
Q ss_pred ----hhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC----eEeec-CceEEEEccCC
Q 005186 404 ----LADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG----REVSV-SNAIFVTASSF 466 (710)
Q Consensus 404 ----~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G----r~vd~-~n~I~IlTSN~ 466 (710)
.-+.+..+..+ .++++||||+++++++|+.|+.+|++|.+.-..+ ..+.. .+..||+|+|.
T Consensus 91 ~~~~~~g~l~~A~~~--g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 91 RQNWVDNRLTLAVRE--GFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred ceeecCchHHHHHHc--CCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 01234444443 4699999999999999999999999998765332 22322 35679999995
No 84
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=2.3e-10 Score=129.18 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=82.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc-----ce-EEecCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE-----NF-ICADLCPQ 377 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~-----~f-I~iD~s~~ 377 (710)
+.|+||+.++..+..++... +-...+||+||+|+|||++|+++|+.+++... +. .+.+|...
T Consensus 17 ~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 45999999999888887532 23458999999999999999999999975321 00 11111111
Q ss_pred CCCCCCCCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEe
Q 005186 378 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 378 ~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
.. ..+. .+. .+.|. ..+|......+.+.+.. .++.||||||+|++....++.|+++||+-.
T Consensus 85 ~~-~~~~-d~~--~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~--------- 149 (451)
T PRK06305 85 SS-GTSL-DVL--EIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP--------- 149 (451)
T ss_pred hc-CCCC-ceE--Eeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC---------
Confidence 00 0000 000 01111 11222222233333332 457899999999999999999999999731
Q ss_pred ecCceEEEEccC
Q 005186 454 SVSNAIFVTASS 465 (710)
Q Consensus 454 d~~n~I~IlTSN 465 (710)
.+++||+++|
T Consensus 150 --~~~~~Il~t~ 159 (451)
T PRK06305 150 --QHVKFFLATT 159 (451)
T ss_pred --CCceEEEEeC
Confidence 2567888776
No 85
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.7e-11 Score=131.09 Aligned_cols=129 Identities=22% Similarity=0.210 Sum_probs=97.8
Q ss_pred cccccHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 305 KIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~--------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.|.|-++.|+.|.++|... ..|+. |+--+||+||||||||.||||+|... +..||++-.++
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~--------PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSE 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGID--------PPKGVLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSE 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCC--------CCCceEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHH
Confidence 3888899999999998643 34443 44479999999999999999999977 88999998885
Q ss_pred CCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----------CHHHHHHHHhhHhCCcc
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGKL 445 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-----------~~~vqn~LLq~LE~G~l 445 (710)
+. +.|+|- |..++..+++..+++..+||||||||.+ +.+||..|+++|..=.=
T Consensus 221 ----lV-------qKYiGE-----GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 221 ----LV-------QKYIGE-----GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred ----HH-------HHHhcc-----chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 21 244543 3445667788888888899999999964 57999999999963211
Q ss_pred cCCCCeEeecCceEEEEccCC
Q 005186 446 PDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 446 ~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
-|.. .|+-|||+||.
T Consensus 285 FD~~------~nvKVI~ATNR 299 (406)
T COG1222 285 FDPR------GNVKVIMATNR 299 (406)
T ss_pred CCCC------CCeEEEEecCC
Confidence 1332 36779999996
No 86
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2e-10 Score=131.94 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=81.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCC--CC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG--EM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~--e~ 381 (710)
+.|+||+++++.+..++...+ ....+||+||+|+|||++|+++|+.++..... ..-.|+.+.. .+
T Consensus 16 ~divGq~~v~~~L~~~i~~~~------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~pcg~C~~C~~i 82 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR------------LHHAYLFTGTRGVGKTTLARILAKSLNCETGV-TATPCGVCSACLEI 82 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCCCCCCHHHHHH
Confidence 458999999999888876422 34578999999999999999999999642110 0001211000 00
Q ss_pred CCCCCcccccccccccc-ccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecC
Q 005186 382 NNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 456 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~ 456 (710)
.... .+.++..+.. ..+......+.+.+... ++.|+||||+|+++...+|.|++.||+-. .
T Consensus 83 ~~~~---~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp-----------~ 148 (527)
T PRK14969 83 DSGR---FVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP-----------E 148 (527)
T ss_pred hcCC---CCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC-----------C
Confidence 0000 0011101100 11111122333433333 35799999999999999999999999731 3
Q ss_pred ceEEEEccC
Q 005186 457 NAIFVTASS 465 (710)
Q Consensus 457 n~I~IlTSN 465 (710)
+++||++|+
T Consensus 149 ~~~fIL~t~ 157 (527)
T PRK14969 149 HVKFILATT 157 (527)
T ss_pred CEEEEEEeC
Confidence 567888775
No 87
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.5e-10 Score=131.65 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=80.8
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc---c-eEE---ecCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE---N-FIC---ADLC 375 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~---~-fI~---iD~s 375 (710)
.+.|+||+.++..|..++...+ -...+||+||+|||||++|++||+.+..... + +.. --|+
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r------------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg 82 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG 82 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc
Confidence 3559999999998877765322 2457999999999999999999999964210 0 000 0111
Q ss_pred CC------CCCCCCCCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcc
Q 005186 376 PQ------DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKL 445 (710)
Q Consensus 376 ~~------~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l 445 (710)
.+ +. ..+.+ +. .+.|. ...+...+..+.+.+.. .++.||||||+|++....++.|+++||+-.
T Consensus 83 ~C~sC~~~~~-g~~~n-~~--~~d~~--s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp- 155 (620)
T PRK14954 83 ECESCRDFDA-GTSLN-IS--EFDAA--SNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP- 155 (620)
T ss_pred cCHHHHHHhc-cCCCC-eE--Eeccc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC-
Confidence 10 00 00000 00 00010 01111112233344433 346799999999999999999999999731
Q ss_pred cCCCCeEeecCceEEEEccC
Q 005186 446 PDSYGREVSVSNAIFVTASS 465 (710)
Q Consensus 446 ~d~~Gr~vd~~n~I~IlTSN 465 (710)
..++||++++
T Consensus 156 ----------~~tv~IL~t~ 165 (620)
T PRK14954 156 ----------PHAIFIFATT 165 (620)
T ss_pred ----------CCeEEEEEeC
Confidence 3567777665
No 88
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.21 E-value=4e-10 Score=128.04 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=80.3
Q ss_pred cccccHHHHHHHHHHHHH-----HhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQ-----RRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG 379 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~-----~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~ 379 (710)
.|.|.+.+++.+...... ...|+. ++..+||+||+|||||.+|++||..+ +.+|+.++++..-
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~--------~pkGILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~- 296 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLP--------TPRGLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLF- 296 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCC--------CCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhc-
Confidence 477777776665543221 122332 33479999999999999999999988 7899999998521
Q ss_pred CCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH------------HHHHHHHhhHhCCcccC
Q 005186 380 EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV------------HVQNSLSKAIQTGKLPD 447 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~------------~vqn~LLq~LE~G~l~d 447 (710)
.+|+|..+. ....+....+....+||||||||++-. .+.+.|+..|++.
T Consensus 297 ----------~~~vGese~-----~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~---- 357 (489)
T CHL00195 297 ----------GGIVGESES-----RMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK---- 357 (489)
T ss_pred ----------ccccChHHH-----HHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----
Confidence 134444322 223344444555679999999998632 2445566666532
Q ss_pred CCCeEeecCceEEEEccCC
Q 005186 448 SYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 448 ~~Gr~vd~~n~I~IlTSN~ 466 (710)
-.+++||+|||.
T Consensus 358 -------~~~V~vIaTTN~ 369 (489)
T CHL00195 358 -------KSPVFVVATANN 369 (489)
T ss_pred -------CCceEEEEecCC
Confidence 135778888884
No 89
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=3e-10 Score=130.84 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=82.7
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~s~~~~e~ 381 (710)
+.|+||+.+++.+..++...+ ....+||+||+|+|||++|+++|+.+...... -.+-.|..+.. +
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r------------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~-i 82 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK------------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES-I 82 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH-H
Confidence 458999999998888775322 23589999999999999999999999643211 11112211000 0
Q ss_pred CCCCCccccccccccc-cccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecC
Q 005186 382 NNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 456 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~-~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~ 456 (710)
.... .+.++-.+. ...|-.-...+.+.+... ++.|++|||+|.++...++.|++.||+.. .
T Consensus 83 ~~~~---h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp-----------~ 148 (605)
T PRK05896 83 NTNQ---SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP-----------K 148 (605)
T ss_pred HcCC---CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC-----------C
Confidence 0000 001110010 011211123344444443 35799999999999999999999999742 3
Q ss_pred ceEEEEccC
Q 005186 457 NAIFVTASS 465 (710)
Q Consensus 457 n~I~IlTSN 465 (710)
+++||++|+
T Consensus 149 ~tvfIL~Tt 157 (605)
T PRK05896 149 HVVFIFATT 157 (605)
T ss_pred cEEEEEECC
Confidence 577888776
No 90
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=4.2e-10 Score=128.12 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=82.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc----ceE-EecCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFI-CADLCPQD 378 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~----~fI-~iD~s~~~ 378 (710)
..|+||+.++..+..++...+ ....+||+||+|+|||++|+++|+.+...+. ++- +.+|...+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~------------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR------------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC------------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 459999999998888875322 3357999999999999999999999863211 111 11221110
Q ss_pred C-CCCCCCCccccccccccccccccchhhHHHHHHHhCC----CeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEe
Q 005186 379 G-EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKP----LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 379 ~-e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p----~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
. .+. .+. ...+. .-+|......+.+.+...| +.|++|||+++++...++.|++.|++..
T Consensus 84 ~g~~~---d~~--eidaa--s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp--------- 147 (486)
T PRK14953 84 KGSFP---DLI--EIDAA--SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP--------- 147 (486)
T ss_pred cCCCC---cEE--EEeCc--cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC---------
Confidence 0 000 000 00000 0122222334555555444 5799999999999999999999998641
Q ss_pred ecCceEEEEccC
Q 005186 454 SVSNAIFVTASS 465 (710)
Q Consensus 454 d~~n~I~IlTSN 465 (710)
..++||++++
T Consensus 148 --~~~v~Il~tt 157 (486)
T PRK14953 148 --PRTIFILCTT 157 (486)
T ss_pred --CCeEEEEEEC
Confidence 2456777665
No 91
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=4.2e-10 Score=130.74 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=83.1
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc-----ce--EEecCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE-----NF--ICADLC 375 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~-----~f--I~iD~s 375 (710)
.+.|+||+.+++.|..++... |....+||+||+|+|||++|++||+.++.... +. .+--|.
T Consensus 23 f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~ 90 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE 90 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH
Confidence 345999999999998888633 23458999999999999999999999864311 00 000010
Q ss_pred CCCCCCCCCCCcccccccccc-ccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC
Q 005186 376 PQDGEMNNPPKFYHQVVGGDS-VQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG 450 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~-~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G 450 (710)
.+.. +.+.. .+.++-.+ ....|-.-+..+.+.+... ++.||||||+|.++...+|.|+++||+--
T Consensus 91 ~C~~-i~~g~---h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp------ 160 (598)
T PRK09111 91 HCQA-IMEGR---HVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPP------ 160 (598)
T ss_pred HHHH-HhcCC---CCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCC------
Confidence 0000 00000 00000000 0111211223344445443 46899999999999999999999999631
Q ss_pred eEeecCceEEEEccC
Q 005186 451 REVSVSNAIFVTASS 465 (710)
Q Consensus 451 r~vd~~n~I~IlTSN 465 (710)
.+++|||+++
T Consensus 161 -----~~~~fIl~tt 170 (598)
T PRK09111 161 -----PHVKFIFATT 170 (598)
T ss_pred -----CCeEEEEEeC
Confidence 3577888775
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.19 E-value=6.9e-10 Score=120.63 Aligned_cols=135 Identities=17% Similarity=0.148 Sum_probs=80.5
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCC--CC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG--EM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~--e~ 381 (710)
+.|+||+++++.+...+... +....+||+||+|+|||++|+++|+.+.+....-. -.|+.+.. .+
T Consensus 14 ~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~-~~c~~c~~c~~~ 80 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDG-EPCNECESCKEI 80 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CCCCCCHHHHHH
Confidence 45899999999988877532 23458999999999999999999999864321100 01110000 00
Q ss_pred CCCCCccccccccccc-cccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecC
Q 005186 382 NNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 456 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~-~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~ 456 (710)
.... .+.+.-.+. ...+......+.+.+... ++.||+|||+|.++...++.|++.|++.. .
T Consensus 81 ~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~-----------~ 146 (355)
T TIGR02397 81 NSGS---SLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-----------E 146 (355)
T ss_pred hcCC---CCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc-----------c
Confidence 0000 000000000 001111122344444443 35699999999999999999999998631 3
Q ss_pred ceEEEEccC
Q 005186 457 NAIFVTASS 465 (710)
Q Consensus 457 n~I~IlTSN 465 (710)
+++||+++|
T Consensus 147 ~~~lIl~~~ 155 (355)
T TIGR02397 147 HVVFILATT 155 (355)
T ss_pred ceeEEEEeC
Confidence 567888775
No 93
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.19 E-value=2.7e-10 Score=126.41 Aligned_cols=137 Identities=19% Similarity=0.144 Sum_probs=88.4
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.|+|.+++++.|...+.........-......++..+||+||+|||||++|+++|..+ ..+|+.++++...
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~l~------ 202 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELV------ 202 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHHHh------
Confidence 4899999999998888543211000000001234579999999999999999999988 5779998887521
Q ss_pred CCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----------CHHHHHHHHhhHhCCcccCCCCeEe
Q 005186 385 PKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 385 ~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-----------~~~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
..|+|... .....+.+.......+||||||||.+ +..++..|++++..-.-..
T Consensus 203 -----~~~~g~~~-----~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~------ 266 (389)
T PRK03992 203 -----QKFIGEGA-----RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD------ 266 (389)
T ss_pred -----HhhccchH-----HHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC------
Confidence 12333221 12233444445556689999999987 4677888888875421111
Q ss_pred ecCceEEEEccCC
Q 005186 454 SVSNAIFVTASSF 466 (710)
Q Consensus 454 d~~n~I~IlTSN~ 466 (710)
...+++||+|||.
T Consensus 267 ~~~~v~VI~aTn~ 279 (389)
T PRK03992 267 PRGNVKIIAATNR 279 (389)
T ss_pred CCCCEEEEEecCC
Confidence 1236789999984
No 94
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.18 E-value=7.7e-11 Score=127.76 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=99.7
Q ss_pred hHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEE
Q 005186 292 LSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 371 (710)
Q Consensus 292 ~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~ 371 (710)
......+...+...++|+++++..+..++.. .+++||.||||||||++|+++|+.+ +.+|++
T Consensus 12 ~~~~~~~~~~~~~~~~g~~~~~~~~l~a~~~---------------~~~vll~G~PG~gKT~la~~lA~~l---~~~~~~ 73 (329)
T COG0714 12 AEILGKIRSELEKVVVGDEEVIELALLALLA---------------GGHVLLEGPPGVGKTLLARALARAL---GLPFVR 73 (329)
T ss_pred hhHHHHHHhhcCCeeeccHHHHHHHHHHHHc---------------CCCEEEECCCCccHHHHHHHHHHHh---CCCeEE
Confidence 3456677788888899999888776666542 2379999999999999999999999 689999
Q ss_pred ecCCCCCCCCCCCCCcccccccccccccc----cc---chhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 372 ADLCPQDGEMNNPPKFYHQVVGGDSVQFR----GK---TLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 372 iD~s~~~~e~~~~~sl~~~~~~G~~~~f~----G~---t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
+.|... .. +...+|....-. .. -.-+.+..+++ .|+|+|||+++++.+|+.|+++|++++
T Consensus 74 i~~t~~----l~-----p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~ 140 (329)
T COG0714 74 IQCTPD----LL-----PSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQ 140 (329)
T ss_pred EecCCC----CC-----HHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcE
Confidence 999851 11 122222211100 00 00022222222 699999999999999999999999998
Q ss_pred ccCCCCeEeecCc-eEEEEccCC
Q 005186 445 LPDSYGREVSVSN-AIFVTASSF 466 (710)
Q Consensus 445 l~d~~Gr~vd~~n-~I~IlTSN~ 466 (710)
++...-.++.+.. .++|+|+|-
T Consensus 141 vtv~~~~~~~~~~~f~viaT~Np 163 (329)
T COG0714 141 VTVPGLTTIRLPPPFIVIATQNP 163 (329)
T ss_pred EEECCcCCcCCCCCCEEEEccCc
Confidence 8764322155554 677778794
No 95
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=6.5e-10 Score=128.49 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=80.7
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~s~~~~e~ 381 (710)
+.|+||+.++..+..++...+ -...+||+||+|+|||++|++||+.+.+...+ ..+-.|..... +
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~-i 82 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK------------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKS-I 82 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC------------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHH-H
Confidence 459999999999888886322 33589999999999999999999999643211 11111110000 0
Q ss_pred CCCCCcccccccccccccccc--chhhHHHH---HHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeE
Q 005186 382 NNPPKFYHQVVGGDSVQFRGK--TLADYVAW---ELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~--t~~~~L~~---al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
....+ ..++- +.|. ...+.+.+ .+.. .++.|++|||++.++...++.|++.||+..
T Consensus 83 ~~~~~---~dv~~----idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp-------- 147 (563)
T PRK06647 83 DNDNS---LDVIE----IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP-------- 147 (563)
T ss_pred HcCCC---CCeEE----ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC--------
Confidence 00000 00000 0011 11122322 2232 456799999999999999999999999621
Q ss_pred eecCceEEEEccC
Q 005186 453 VSVSNAIFVTASS 465 (710)
Q Consensus 453 vd~~n~I~IlTSN 465 (710)
.+++||++++
T Consensus 148 ---~~~vfI~~tt 157 (563)
T PRK06647 148 ---PYIVFIFATT 157 (563)
T ss_pred ---CCEEEEEecC
Confidence 3677888775
No 96
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=8.3e-10 Score=128.89 Aligned_cols=137 Identities=17% Similarity=0.169 Sum_probs=81.3
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc---eEEecCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN---FICADLCPQDG 379 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~---fI~iD~s~~~~ 379 (710)
.+.|+||+++++.|..++... +-...+||+||+|+|||++|+++|+.+...... ..+-.|..+..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~ 83 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVA 83 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHH
Confidence 345999999999988887632 234579999999999999999999998632110 00111110000
Q ss_pred CCCCCCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeec
Q 005186 380 EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSV 455 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~ 455 (710)
+....+.-.-.+.|.+ ..+...+..+.+.+... ++.||+|||+|.++...++.|+++||+--
T Consensus 84 -~~~~~~~n~~~ld~~~--~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp----------- 149 (614)
T PRK14971 84 -FNEQRSYNIHELDAAS--NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP----------- 149 (614)
T ss_pred -HhcCCCCceEEecccc--cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC-----------
Confidence 0000000000011110 01111112222333333 36799999999999999999999999631
Q ss_pred CceEEEEccC
Q 005186 456 SNAIFVTASS 465 (710)
Q Consensus 456 ~n~I~IlTSN 465 (710)
.+++||++|+
T Consensus 150 ~~tifIL~tt 159 (614)
T PRK14971 150 SYAIFILATT 159 (614)
T ss_pred CCeEEEEEeC
Confidence 3577888776
No 97
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.16 E-value=1e-09 Score=118.21 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=82.1
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCC--cceEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK--ENFICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~--~~fI~iD~s~~~~e~ 381 (710)
+.++||++++..+..++... ...+++|+||+|+|||++|+++++.+++.. .+++.++++......
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG 81 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc
Confidence 34789999988887766421 112689999999999999999999997643 467888887421100
Q ss_pred CCCCCcc-ccc---cccccccccccchhhHHHHHHH---h-----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCC
Q 005186 382 NNPPKFY-HQV---VGGDSVQFRGKTLADYVAWELL---K-----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 382 ~~~~sl~-~~~---~~G~~~~f~G~t~~~~L~~al~---~-----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~ 449 (710)
. ..+. .+. +.+.. .-.+....+.+.+.+. . .+..||||||++.++...++.|+++|++..
T Consensus 82 ~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~----- 153 (337)
T PRK12402 82 K--KYLVEDPRFAHFLGTD-KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS----- 153 (337)
T ss_pred h--hhhhcCcchhhhhhhh-hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc-----
Confidence 0 0000 000 00100 0000001122222221 1 345799999999999999999999998532
Q ss_pred CeEeecCceEEEEccC
Q 005186 450 GREVSVSNAIFVTASS 465 (710)
Q Consensus 450 Gr~vd~~n~I~IlTSN 465 (710)
.++.||++++
T Consensus 154 ------~~~~~Il~~~ 163 (337)
T PRK12402 154 ------RTCRFIIATR 163 (337)
T ss_pred ------CCCeEEEEeC
Confidence 2355777766
No 98
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.16 E-value=4.6e-10 Score=134.03 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=89.2
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|.|++.++..|.+.+.........-.+...+++..+||+||+|||||++|++||..+ ..+|+.++++..-
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~fi~v~~~~l~----- 524 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANFIAVRGPEIL----- 524 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHh-----
Confidence 45889999999998887642110000000001234579999999999999999999987 6789998887421
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC------------HHHHHHHHhhHhCCcccCCCCe
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD------------VHVQNSLSKAIQTGKLPDSYGR 451 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~------------~~vqn~LLq~LE~G~l~d~~Gr 451 (710)
..|+|..+. .+..+....+....+||||||||.+. ..+.+.|+..|+.-.
T Consensus 525 ------~~~vGese~-----~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~------- 586 (733)
T TIGR01243 525 ------SKWVGESEK-----AIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ------- 586 (733)
T ss_pred ------hcccCcHHH-----HHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc-------
Confidence 134554432 23445555566677999999999763 245666777776311
Q ss_pred EeecCceEEEEccCC
Q 005186 452 EVSVSNAIFVTASSF 466 (710)
Q Consensus 452 ~vd~~n~I~IlTSN~ 466 (710)
...+++||+|||.
T Consensus 587 --~~~~v~vI~aTn~ 599 (733)
T TIGR01243 587 --ELSNVVVIAATNR 599 (733)
T ss_pred --CCCCEEEEEeCCC
Confidence 1257899999994
No 99
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.15 E-value=3.7e-10 Score=132.60 Aligned_cols=137 Identities=18% Similarity=0.126 Sum_probs=85.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHc--------------------
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY-------------------- 363 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~-------------------- 363 (710)
..|+||++++.++..++... ..+.+||.|++|+|||++|++|+..+-
T Consensus 4 ~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred chhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 46999999887664443211 135799999999999999999999882
Q ss_pred ------------CCCcceEEecCCCCCCCCCCCCCcccccccccccc---c-cccchhhHHHHHHHhCCCeEEEEecccc
Q 005186 364 ------------GGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQ---F-RGKTLADYVAWELLKKPLSVVYLENVDK 427 (710)
Q Consensus 364 ------------gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~---f-~G~t~~~~L~~al~~~p~sVI~LDEIDK 427 (710)
....+|+.+.++. +...++|...- . .|.. ..-.+.+.....+|||||||++
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~-----------t~~~l~G~~d~~~~l~~g~~--~~~~G~L~~A~~GiL~lDEi~~ 137 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGA-----------TEDRVVGSLDIERALREGEK--AFQPGLLAEAHRGILYIDEVNL 137 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCC-----------cHHHcCCcccHHHHhhcCCe--eecCcceeecCCCeEEeChhhh
Confidence 0112333333331 01123333110 0 0100 0012334455678999999999
Q ss_pred CCHHHHHHHHhhHhCCcccC-CCCeEeec-CceEEEEccCC
Q 005186 428 ADVHVQNSLSKAIQTGKLPD-SYGREVSV-SNAIFVTASSF 466 (710)
Q Consensus 428 a~~~vqn~LLq~LE~G~l~d-~~Gr~vd~-~n~I~IlTSN~ 466 (710)
+++.+|+.|+++|++|.+.- ..|....+ .+.++|+|+|.
T Consensus 138 l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np 178 (633)
T TIGR02442 138 LDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNP 178 (633)
T ss_pred CCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCC
Confidence 99999999999999996432 12322222 45789999885
No 100
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=1.5e-09 Score=126.89 Aligned_cols=135 Identities=15% Similarity=0.087 Sum_probs=81.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc-eEEecCCCCC---C
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN-FICADLCPQD---G 379 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~-fI~iD~s~~~---~ 379 (710)
..++||++++..|..++...+ -...+||+||+|+|||++|+++|+.+++.... ...-.|+.++ .
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r------------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR------------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC------------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 459999999999888876432 12479999999999999999999999753210 0000111100 0
Q ss_pred CCCCCCCcccccccccccc-ccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 380 EMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
+.... .+.++..+.. ..+...+..+.+.+.. .++.||||||+|+|+...++.|++.||+--
T Consensus 84 -i~~g~---h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp---------- 149 (620)
T PRK14948 84 -IAAGN---ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP---------- 149 (620)
T ss_pred -HhcCC---CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC----------
Confidence 00000 0001001100 0111112233333332 346799999999999999999999999531
Q ss_pred cCceEEEEccC
Q 005186 455 VSNAIFVTASS 465 (710)
Q Consensus 455 ~~n~I~IlTSN 465 (710)
.+++||++|+
T Consensus 150 -~~tvfIL~t~ 159 (620)
T PRK14948 150 -PRVVFVLATT 159 (620)
T ss_pred -cCeEEEEEeC
Confidence 3577888776
No 101
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.13 E-value=7.2e-11 Score=111.47 Aligned_cols=115 Identities=16% Similarity=0.193 Sum_probs=73.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccccccccccccc-c-hhhHHHHHHHhCCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGK-T-LADYVAWELLKKPL 417 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~-t-~~~~L~~al~~~p~ 417 (710)
+++|.||+|+|||++|+.||+.+ ..+++.+.|+.. .+..+ ++|...---+. . .-+.+..+++ ..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~----~~~~d-----l~g~~~~~~~~~~~~~~~l~~a~~--~~ 66 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSD----TTEED-----LIGSYDPSNGQFEFKDGPLVRAMR--KG 66 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTT----STHHH-----HHCEEET-TTTTCEEE-CCCTTHH--EE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccc----ccccc-----ceeeeeeccccccccccccccccc--ce
Confidence 48999999999999999999999 788888888852 11111 22211100000 0 0022333333 35
Q ss_pred eEEEEeccccCCHHHHHHHHhhHhCCcccCCC-CeEeecC-------ceEEEEccCCCc
Q 005186 418 SVVYLENVDKADVHVQNSLSKAIQTGKLPDSY-GREVSVS-------NAIFVTASSFVE 468 (710)
Q Consensus 418 sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~-Gr~vd~~-------n~I~IlTSN~g~ 468 (710)
.|+|||||+++++.+++.|+.+++++++.... +..+... +.+||+|+|...
T Consensus 67 ~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 67 GILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp EEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred eEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 79999999999999999999999999877433 3344343 388999999643
No 102
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.12 E-value=2.2e-09 Score=115.21 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=83.3
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
++.+++.+.+ |+||+++++.+...+... +.+..++|+||+|+|||++|+++++.+ ..+++
T Consensus 13 ~kyrP~~~~~-----~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~---~~~~~ 72 (316)
T PHA02544 13 QKYRPSTIDE-----CILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEV---GAEVL 72 (316)
T ss_pred eccCCCcHHH-----hcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHh---Cccce
Confidence 4444444433 899999998887777521 234578889999999999999999987 45677
Q ss_pred EecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccC-CHHHHHHHHhhHhCCcc
Q 005186 371 CADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKA-DVHVQNSLSKAIQTGKL 445 (710)
Q Consensus 371 ~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa-~~~vqn~LLq~LE~G~l 445 (710)
.++++. .. .. ...+.+.+.... ..+.||||||+|++ ....++.|..+|++..
T Consensus 73 ~i~~~~-~~-----------------~~----~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~- 129 (316)
T PHA02544 73 FVNGSD-CR-----------------ID----FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS- 129 (316)
T ss_pred EeccCc-cc-----------------HH----HHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC-
Confidence 777663 00 00 000112222211 35689999999999 7788889988888531
Q ss_pred cCCCCeEeecCceEEEEccCC
Q 005186 446 PDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 446 ~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.++.||+|+|.
T Consensus 130 ----------~~~~~Ilt~n~ 140 (316)
T PHA02544 130 ----------KNCSFIITANN 140 (316)
T ss_pred ----------CCceEEEEcCC
Confidence 35679998883
No 103
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1e-09 Score=125.03 Aligned_cols=127 Identities=19% Similarity=0.210 Sum_probs=91.3
Q ss_pred CcccccHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~--------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+.|.|+++.+..|.++|... +.|+. ++-.+||+||||||||++||+||... ..+|+.+-+.
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~--------ppkGVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgp 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGIS--------PPKGVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGP 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCC--------CCceEEEECCCCcchHHHHHHHhhhh---cCCeeeccCH
Confidence 45778888888888887543 34443 34479999999999999999999988 7889988766
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----------CHHHHHHHHhhHhCCc
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGK 444 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-----------~~~vqn~LLq~LE~G~ 444 (710)
+. ...|+|..+. .+..++...+....+||||||||.. ...|.+.||.-|+...
T Consensus 503 EL-----------~sk~vGeSEr-----~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 503 EL-----------FSKYVGESER-----AIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE 566 (693)
T ss_pred HH-----------HHHhcCchHH-----HHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc
Confidence 42 1246666554 2344555555555599999999964 3457777777776332
Q ss_pred ccCCCCeEeecCceEEEEccCC
Q 005186 445 LPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 445 l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
..++++||.+||.
T Consensus 567 ---------~~k~V~ViAATNR 579 (693)
T KOG0730|consen 567 ---------ALKNVLVIAATNR 579 (693)
T ss_pred ---------ccCcEEEEeccCC
Confidence 1268999999995
No 104
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=2e-09 Score=125.35 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=80.9
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc-c-e-EEecCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE-N-F-ICADLCPQDG 379 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~-~-f-I~iD~s~~~~ 379 (710)
.+.|+||+++++.|..++...+ -...+||+||+|+|||++|++||+.+..... + . .+-.|..+..
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~------------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR------------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC------------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 3459999999998877775432 2347899999999999999999999853211 0 0 0001110000
Q ss_pred CCCCCCCccccccccccc-cccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 380 EMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~~-~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
+..... +.++-.+. ...+......+.+.+.. ..+.||||||+|+++...++.|+++||+..
T Consensus 83 -i~~~~~---~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp---------- 148 (585)
T PRK14950 83 -IAEGSA---VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP---------- 148 (585)
T ss_pred -HhcCCC---CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC----------
Confidence 000000 00000000 11121112233444443 346799999999999999999999999742
Q ss_pred cCceEEEEccC
Q 005186 455 VSNAIFVTASS 465 (710)
Q Consensus 455 ~~n~I~IlTSN 465 (710)
.+++||++++
T Consensus 149 -~~tv~Il~t~ 158 (585)
T PRK14950 149 -PHAIFILATT 158 (585)
T ss_pred -CCeEEEEEeC
Confidence 3567887765
No 105
>PRK04195 replication factor C large subunit; Provisional
Probab=99.11 E-value=2e-09 Score=122.71 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=74.7
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 385 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~ 385 (710)
|+||++++..|...+..+..| ++..++||+||+|+|||++|++||+.+ +..++.++++....
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g---------~~~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~------ 77 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKG---------KPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRT------ 77 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEccccccc------
Confidence 899999999999998877643 234589999999999999999999988 56778887774211
Q ss_pred Cccccccccccccccccchhh-HHHHHHH-----hCCCeEEEEeccccCCH----HHHHHHHhhHhC
Q 005186 386 KFYHQVVGGDSVQFRGKTLAD-YVAWELL-----KKPLSVVYLENVDKADV----HVQNSLSKAIQT 442 (710)
Q Consensus 386 sl~~~~~~G~~~~f~G~t~~~-~L~~al~-----~~p~sVI~LDEIDKa~~----~vqn~LLq~LE~ 442 (710)
..... .+..+.. ..+..||+|||+|.++. ..++.|+++++.
T Consensus 78 ----------------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~ 128 (482)
T PRK04195 78 ----------------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK 128 (482)
T ss_pred ----------------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc
Confidence 00001 1111111 12567999999999876 678899999974
No 106
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=2.8e-09 Score=117.08 Aligned_cols=119 Identities=17% Similarity=0.147 Sum_probs=78.0
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc-------ceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE-------NFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~-------~fI~iD~s~ 376 (710)
+.|+||+.+++.+...+... +...+++|+||+|+|||++|+++|+.+..... ++..+++..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 45899999998888887532 13458999999999999999999999864211 111111110
Q ss_pred CCCCCCCCCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeE
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
. ...+......+.+.+.. .++.||+|||++++....++.|++.|++.
T Consensus 85 ------------------~--~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~--------- 135 (367)
T PRK14970 85 ------------------A--SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP--------- 135 (367)
T ss_pred ------------------c--cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC---------
Confidence 0 00111111223333332 23579999999999999999999999862
Q ss_pred eecCceEEEEccC
Q 005186 453 VSVSNAIFVTASS 465 (710)
Q Consensus 453 vd~~n~I~IlTSN 465 (710)
-.+++||++++
T Consensus 136 --~~~~~~Il~~~ 146 (367)
T PRK14970 136 --PAHAIFILATT 146 (367)
T ss_pred --CCceEEEEEeC
Confidence 12467888776
No 107
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.11 E-value=1.9e-09 Score=122.97 Aligned_cols=140 Identities=17% Similarity=0.148 Sum_probs=86.8
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCC---C-
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQD---G- 379 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~---~- 379 (710)
..|+||..+++.+..++ . ....++|.||+|+|||++|++|+..+..... -+.++..... +
T Consensus 192 ~dv~Gq~~~~~al~~aa----~-----------~g~~vlliG~pGsGKTtlar~l~~llp~~~~-~~~le~~~i~s~~g~ 255 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAA----A-----------GGHNLLLFGPPGSGKTMLASRLQGILPPLTN-EEAIETARIWSLVGK 255 (499)
T ss_pred HHhcCcHHHHhhhhhhc----c-----------CCCEEEEEecCCCCHHHHHHHHhcccCCCCC-cEEEeccccccchhh
Confidence 34899999877655443 1 1248999999999999999999987743211 1222322110 0
Q ss_pred ----------CCCCCCC-ccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCC
Q 005186 380 ----------EMNNPPK-FYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS 448 (710)
Q Consensus 380 ----------e~~~~~s-l~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~ 448 (710)
.|..+|. .+....+| |.. ..-.+.+..+..+|+|||||+++++.+|+.|+++||+|.+.-.
T Consensus 256 ~~~~~~~~~~Pf~~p~~s~s~~~~~g------gg~--~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~ 327 (499)
T TIGR00368 256 LIDRKQIKQRPFRSPHHSASKPALVG------GGP--IPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISIS 327 (499)
T ss_pred hccccccccCCccccccccchhhhhC------Ccc--ccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEE
Confidence 0111110 11111222 110 0123456667789999999999999999999999999986422
Q ss_pred -CCeEeec-CceEEEEccCCC
Q 005186 449 -YGREVSV-SNAIFVTASSFV 467 (710)
Q Consensus 449 -~Gr~vd~-~n~I~IlTSN~g 467 (710)
.|..+.+ .+..+|+++|..
T Consensus 328 r~g~~~~~pa~frlIaa~Npc 348 (499)
T TIGR00368 328 RASAKIFYPARFQLVAAMNPC 348 (499)
T ss_pred ecCcceeccCCeEEEEecCCc
Confidence 2322223 467899999963
No 108
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.11 E-value=6.2e-10 Score=126.18 Aligned_cols=135 Identities=19% Similarity=0.222 Sum_probs=87.6
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADLCPQDGE 380 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~s~~~~e 380 (710)
...|+||+..++.|..++...+. ...+||.||.|||||++||.+|+.|.....+ -.+..|..+..
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri------------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~- 81 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRI------------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE- 81 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcc------------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh-
Confidence 45589999999999999986543 3589999999999999999999999533210 11222221100
Q ss_pred CCCC--CCccccccccccccccccchhhHHHHHHHhCC----CeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 381 MNNP--PKFYHQVVGGDSVQFRGKTLADYVAWELLKKP----LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 381 ~~~~--~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p----~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
.... .+++ ++-+.. -+|-.-...|.+.+...| +.|++|||++.+....+|+||+.||+-
T Consensus 82 I~~g~~~Dvi--EiDaAS--n~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP----------- 146 (515)
T COG2812 82 INEGSLIDVI--EIDAAS--NTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP----------- 146 (515)
T ss_pred hhcCCcccch--hhhhhh--ccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC-----------
Confidence 0000 0111 000000 012112234555555444 679999999999999999999999974
Q ss_pred cCceEEEEccC
Q 005186 455 VSNAIFVTASS 465 (710)
Q Consensus 455 ~~n~I~IlTSN 465 (710)
..+++||++|.
T Consensus 147 P~hV~FIlATT 157 (515)
T COG2812 147 PSHVKFILATT 157 (515)
T ss_pred ccCeEEEEecC
Confidence 25788999876
No 109
>PRK06893 DNA replication initiation factor; Validated
Probab=99.10 E-value=2.3e-09 Score=110.60 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=43.1
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 005186 600 KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVL 665 (710)
Q Consensus 600 ~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl 665 (710)
.++.+.|+|.+++.+++.+....+ .+.+++++++||+.. .....|.+...|+++.
T Consensus 154 ~~~~l~~pd~e~~~~iL~~~a~~~---------~l~l~~~v~~~L~~~--~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 154 EIYQLNDLTDEQKIIVLQRNAYQR---------GIELSDEVANFLLKR--LDRDMHTLFDALDLLD 208 (229)
T ss_pred CeeeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHh--ccCCHHHHHHHHHHHH
Confidence 467899999999999987765421 278999999999996 2335688999999874
No 110
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.09 E-value=4.5e-11 Score=112.15 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=66.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccc-hhhHHHHHHHhCCCe
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKT-LADYVAWELLKKPLS 418 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t-~~~~L~~al~~~p~s 418 (710)
++||.|+||+|||++|++||+.+ +..|.+|.+.. .+.|..+.|.... ...+ ......+.+- ..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tp---------dllPsDi~G~~v~-~~~~~~f~~~~GPif---~~ 64 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTP---------DLLPSDILGFPVY-DQETGEFEFRPGPIF---TN 64 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--T---------T--HHHHHEEEEE-ETTTTEEEEEE-TT----SS
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecC---------CCCcccceeeeee-ccCCCeeEeecChhh---hc
Confidence 48999999999999999999998 66788888763 1223344443211 1000 0000001111 25
Q ss_pred EEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCc-eEEEEccCC
Q 005186 419 VVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSN-AIFVTASSF 466 (710)
Q Consensus 419 VI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n-~I~IlTSN~ 466 (710)
|+|+|||.++++.+|.+||++|++++++. .|..+.+.+ .+||+|-|-
T Consensus 65 ill~DEiNrappktQsAlLeam~Er~Vt~-~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 65 ILLADEINRAPPKTQSALLEAMEERQVTI-DGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp EEEEETGGGS-HHHHHHHHHHHHHSEEEE-TTEEEE--SS-EEEEEE-T
T ss_pred eeeecccccCCHHHHHHHHHHHHcCeEEe-CCEEEECCCcEEEEEecCc
Confidence 99999999999999999999999999885 567888876 677778885
No 111
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.08 E-value=8.1e-10 Score=118.12 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=74.4
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
|+-+.+.|.+ ++||++++.. ...|+..... .....++|+||+|||||+||+.|+...-.....||
T Consensus 130 ermRPktL~d-----yvGQ~hlv~q-~gllrs~ieq---------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfv 194 (554)
T KOG2028|consen 130 ERMRPKTLDD-----YVGQSHLVGQ-DGLLRSLIEQ---------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFV 194 (554)
T ss_pred hhcCcchHHH-----hcchhhhcCc-chHHHHHHHc---------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEE
Confidence 5556666655 6677766654 2222222111 12238999999999999999999987743334466
Q ss_pred EecCCCCCCCCCCCCCccccccccccccccccchhhHHHHH----HHhCCCeEEEEeccccCCHHHHHHHHhhHhCCccc
Q 005186 371 CADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWE----LLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 446 (710)
Q Consensus 371 ~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~a----l~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~ 446 (710)
.+....-. . ....+.+..+ ..-+...|+|||||++.+..-|+.||..+|+|.++
T Consensus 195 elSAt~a~----------------t------~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~ 252 (554)
T KOG2028|consen 195 ELSATNAK----------------T------NDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDIT 252 (554)
T ss_pred EEeccccc----------------h------HHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceE
Confidence 65444210 0 0011111111 11234679999999999999999999999988643
No 112
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.08 E-value=5.4e-09 Score=112.77 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=81.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccc--ccc---c-hhhHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQF--RGK---T-LADYVAWELL 413 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f--~G~---t-~~~~L~~al~ 413 (710)
.++|.||+|||||++|+.||+.+ +.++++++++..- .+..++|....- .|. . .-+.|..+.+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l---------~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~ 133 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHV---------SRIDLVGKDAIVLKDGKQITEFRDGILPWALQ 133 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCC---------ChhhcCCCceeeccCCcceeEEecCcchhHHh
Confidence 69999999999999999999999 7899999998521 122344432110 011 0 1134555554
Q ss_pred hCCCeEEEEeccccCCHHHHHHHHhhHh-CCcccC-CCCeEeecC-ceEEEEccCC
Q 005186 414 KKPLSVVYLENVDKADVHVQNSLSKAIQ-TGKLPD-SYGREVSVS-NAIFVTASSF 466 (710)
Q Consensus 414 ~~p~sVI~LDEIDKa~~~vqn~LLq~LE-~G~l~d-~~Gr~vd~~-n~I~IlTSN~ 466 (710)
+ ..++|||||+.+++++++.|..+|| +|.++- ..++.+.-. +.+||+|.|.
T Consensus 134 ~--g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 134 H--NVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred C--CeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 3 3789999999999999999999999 456654 346666444 6779999995
No 113
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.08 E-value=4.1e-09 Score=112.51 Aligned_cols=116 Identities=21% Similarity=0.366 Sum_probs=77.4
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc--ceEEecCCCCCCCCCC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE--NFICADLCPQDGEMNN 383 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~--~fI~iD~s~~~~e~~~ 383 (710)
++||+++++.+...+... ...+++|+||+|+|||++|+++++.+++... .++.++++...
T Consensus 19 ~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~----- 80 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER----- 80 (319)
T ss_pred hcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc-----
Confidence 789999998888777421 1125899999999999999999999876532 34444333200
Q ss_pred CCCccccccccccccccccchhhHHHHHHHh-----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCce
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLK-----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNA 458 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~ 458 (710)
+.+ .....+.+.... .+..||+|||++.+....++.|+++++... .++
T Consensus 81 ----------~~~------~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-----------~~~ 133 (319)
T PRK00440 81 ----------GID------VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-----------QNT 133 (319)
T ss_pred ----------chH------HHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-----------CCC
Confidence 000 011222233222 234699999999999999999999998532 245
Q ss_pred EEEEccCC
Q 005186 459 IFVTASSF 466 (710)
Q Consensus 459 I~IlTSN~ 466 (710)
+||+++|.
T Consensus 134 ~lIl~~~~ 141 (319)
T PRK00440 134 RFILSCNY 141 (319)
T ss_pred eEEEEeCC
Confidence 68887763
No 114
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.08 E-value=5.2e-09 Score=107.18 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=58.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
.+++|+||+|||||+||++|++.++..+.+++.+++..... .+ .. .....
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~---------------------------~~-~~--~~~~~ 92 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL---------------------------AF-DF--DPEAE 92 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH---------------------------HH-hh--cccCC
Confidence 48999999999999999999998877777888888874100 00 00 11246
Q ss_pred EEEEeccccCCHHHHHHHHhhHhC
Q 005186 419 VVYLENVDKADVHVQNSLSKAIQT 442 (710)
Q Consensus 419 VI~LDEIDKa~~~vqn~LLq~LE~ 442 (710)
+|+||||+.++...+..|+.+++.
T Consensus 93 ~liiDdi~~l~~~~~~~L~~~~~~ 116 (227)
T PRK08903 93 LYAVDDVERLDDAQQIALFNLFNR 116 (227)
T ss_pred EEEEeChhhcCchHHHHHHHHHHH
Confidence 899999999999999999999974
No 115
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.05 E-value=2.9e-09 Score=118.43 Aligned_cols=135 Identities=20% Similarity=0.128 Sum_probs=84.0
Q ss_pred cccccHHHHHHHHHHHHHHhcCC--CCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGH--EDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~--~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
.|.|.+.++..|..++....... ...-| -.++..+||+||+|||||++|++||..+ ..+|+.+.++...
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~G--l~~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~l~---- 216 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIG--IDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSEFV---- 216 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcC--CCCCceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHH----
Confidence 48999999999988886432110 00000 1234579999999999999999999987 6778887665311
Q ss_pred CCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----------CHHHHHHHHhhHhCCcccCCCCe
Q 005186 383 NPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGKLPDSYGR 451 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-----------~~~vqn~LLq~LE~G~l~d~~Gr 451 (710)
..|+|... .....+....+....+||||||||.+ +..++..|.+++..-.-.+.
T Consensus 217 -------~k~~ge~~-----~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~--- 281 (398)
T PTZ00454 217 -------QKYLGEGP-----RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ--- 281 (398)
T ss_pred -------HHhcchhH-----HHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC---
Confidence 12333221 12233444555556699999999975 34566666666642110011
Q ss_pred EeecCceEEEEccCC
Q 005186 452 EVSVSNAIFVTASSF 466 (710)
Q Consensus 452 ~vd~~n~I~IlTSN~ 466 (710)
-.+++||+|||.
T Consensus 282 ---~~~v~VI~aTN~ 293 (398)
T PTZ00454 282 ---TTNVKVIMATNR 293 (398)
T ss_pred ---CCCEEEEEecCC
Confidence 135778999884
No 116
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.05 E-value=7.8e-10 Score=102.05 Aligned_cols=99 Identities=22% Similarity=0.210 Sum_probs=70.9
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCC-CeE
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKP-LSV 419 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p-~sV 419 (710)
+||+||+|+|||++|+++|+.+ +.+++.++++.... .+.+.. ......+........ .+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~-----------~~~~~~-----~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELIS-----------SYAGDS-----EQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHT-----------SSTTHH-----HHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---cccccccccccccc-----------cccccc-----cccccccccccccccccee
Confidence 6899999999999999999998 68899999985211 011111 111223333344443 699
Q ss_pred EEEeccccCCHHH-----------HHHHHhhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 420 VYLENVDKADVHV-----------QNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 420 I~LDEIDKa~~~v-----------qn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
|||||+|++.... ++.|+..|++..-. -++++||+|||.
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~ 111 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNS 111 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESS
T ss_pred eeeccchhcccccccccccccccccceeeecccccccc--------cccceeEEeeCC
Confidence 9999999987765 88999999865422 246899999996
No 117
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.05 E-value=1.7e-09 Score=117.99 Aligned_cols=146 Identities=17% Similarity=0.129 Sum_probs=82.8
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCC----cceEEecCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK----ENFICADLCPQDG 379 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~----~~fI~iD~s~~~~ 379 (710)
..|+||++++.+|..++... ..+.++|.||+|+|||++|++|++.+.... .+|. +.....
T Consensus 17 ~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~---~~p~~p 80 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN---SHPSDP 80 (350)
T ss_pred HHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC---CCCCCh
Confidence 45999999988876655421 235799999999999999999999885211 2332 110000
Q ss_pred CCC---------C----------C------CCcccccccccc---ccccccchhhHHHHHHHhCCCeEEEEeccccCCHH
Q 005186 380 EMN---------N----------P------PKFYHQVVGGDS---VQFRGKTLADYVAWELLKKPLSVVYLENVDKADVH 431 (710)
Q Consensus 380 e~~---------~----------~------~sl~~~~~~G~~---~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~ 431 (710)
+.. . . ..+....++|.- ..+.+... ..-.+.+.+...+|||||||+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~-~~~~GlL~~A~~GiL~lDEInrL~~~ 159 (350)
T CHL00081 81 ELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVK-AFEPGLLAKANRGILYVDEVNLLDDH 159 (350)
T ss_pred hhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcc-cccCCeeeecCCCEEEecChHhCCHH
Confidence 000 0 0 000001112210 00000000 00012233455789999999999999
Q ss_pred HHHHHHhhHhCCcccC-CCCeEeec-CceEEEEccCC
Q 005186 432 VQNSLSKAIQTGKLPD-SYGREVSV-SNAIFVTASSF 466 (710)
Q Consensus 432 vqn~LLq~LE~G~l~d-~~Gr~vd~-~n~I~IlTSN~ 466 (710)
+|..|+++|++|..+- ..|..... .+.++|.|.|.
T Consensus 160 ~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np 196 (350)
T CHL00081 160 LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNP 196 (350)
T ss_pred HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCc
Confidence 9999999999976432 22433322 25677777774
No 118
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=1.6e-09 Score=120.35 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=79.9
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCC------
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ------ 377 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~------ 377 (710)
+.|+||+.+++.|..++...+.+..... .+-...+||+||+|+|||.+|+++|+.++..... .-.|+.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~---~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~~~ 79 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAG---SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACRTV 79 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccC---CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHHH
Confidence 4699999999999999986653222111 1235689999999999999999999988654211 0112211
Q ss_pred -CCCCCCCCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCC
Q 005186 378 -DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 378 -~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
.+.+.+.+-+.+.+ ...+...+..+.+.+... ++.|+||||+|++++..+|.|++.||+.
T Consensus 80 ~~~~hpD~~~i~~~~------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 80 LAGTHPDVRVVAPEG------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred hcCCCCCEEEecccc------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 00011000010110 001111123344444443 4579999999999999999999999974
No 119
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.04 E-value=4.1e-09 Score=107.24 Aligned_cols=96 Identities=18% Similarity=0.130 Sum_probs=65.8
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCc
Q 005186 308 WQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKF 387 (710)
Q Consensus 308 GQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl 387 (710)
+++.+++++...+. . +...+++|+||+|||||++|+++++.+.....+++.++|.....
T Consensus 21 ~~~~~~~~l~~~~~---~----------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~-------- 79 (226)
T TIGR03420 21 GNAELLAALRQLAA---G----------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ-------- 79 (226)
T ss_pred CcHHHHHHHHHHHh---c----------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH--------
Confidence 45566666655542 1 12348999999999999999999998876566788888875211
Q ss_pred cccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHH--HHHHHhhHhC
Q 005186 388 YHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHV--QNSLSKAIQT 442 (710)
Q Consensus 388 ~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~v--qn~LLq~LE~ 442 (710)
.. ..+.+.+. ...+|+||||+.++... +..|+.+++.
T Consensus 80 -------~~---------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~ 118 (226)
T TIGR03420 80 -------AD---------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNR 118 (226)
T ss_pred -------hH---------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHH
Confidence 00 01222222 23699999999998744 8888888864
No 120
>PHA02244 ATPase-like protein
Probab=99.04 E-value=1.9e-09 Score=117.63 Aligned_cols=137 Identities=14% Similarity=0.070 Sum_probs=93.7
Q ss_pred hcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCC
Q 005186 302 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 381 (710)
Q Consensus 302 L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~ 381 (710)
+....+|+...+..+...+.++.. ...+++|.||+|||||++|++||..+ +.+|+.++....
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~-----------~~~PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~l~d---- 155 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVN-----------ANIPVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNAIMD---- 155 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHh-----------cCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecChH----
Confidence 345577777777666665554432 12379999999999999999999987 678888874310
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEE
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFV 461 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~I 461 (710)
. ..+.|+... .|...-+.+..+++ ..+++|||||+.++++++..|..+++++.+....++...-.+..+|
T Consensus 156 --~-----~~L~G~i~~-~g~~~dgpLl~A~~--~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlI 225 (383)
T PHA02244 156 --E-----FELKGFIDA-NGKFHETPFYEAFK--KGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVI 225 (383)
T ss_pred --H-----Hhhcccccc-cccccchHHHHHhh--cCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEE
Confidence 0 012222111 11111135666654 4689999999999999999999999988776655543333567899
Q ss_pred EccCC
Q 005186 462 TASSF 466 (710)
Q Consensus 462 lTSN~ 466 (710)
+|+|.
T Consensus 226 ATsN~ 230 (383)
T PHA02244 226 SAGNT 230 (383)
T ss_pred EeeCC
Confidence 99996
No 121
>CHL00176 ftsH cell division protein; Validated
Probab=99.03 E-value=7.5e-09 Score=121.23 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=82.7
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|+|.++++..+...+...+....... ...+.+..+||+||+|||||++|++||..+ ..+|+.++++....
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~-~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~---- 254 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTA-VGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVE---- 254 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhh-ccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHH----
Confidence 5599999999888877754432111000 001234579999999999999999999987 67899988875211
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HH---HHHHHHhhHhCCcccCCC
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VH---VQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~---vqn~LLq~LE~G~l~d~~ 449 (710)
.+.|. +......+.........+||||||||.+. .. +.+.|+..|+. . ..
T Consensus 255 -------~~~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg-~-~~-- 318 (638)
T CHL00176 255 -------MFVGV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG-F-KG-- 318 (638)
T ss_pred -------Hhhhh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc-c-cC--
Confidence 12221 11112333444445556899999999773 33 34444444432 1 11
Q ss_pred CeEeecCceEEEEccCC
Q 005186 450 GREVSVSNAIFVTASSF 466 (710)
Q Consensus 450 Gr~vd~~n~I~IlTSN~ 466 (710)
-.+++||+|||.
T Consensus 319 -----~~~ViVIaaTN~ 330 (638)
T CHL00176 319 -----NKGVIVIAATNR 330 (638)
T ss_pred -----CCCeeEEEecCc
Confidence 135788898884
No 122
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.03 E-value=1.4e-09 Score=126.92 Aligned_cols=53 Identities=26% Similarity=0.303 Sum_probs=42.9
Q ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 296 KTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 296 k~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..+...+.+.|+||++|+..|..++... ..++|+||+|+|||++|+++++.+.
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~~---------------~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQR---------------RHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHhC---------------CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3444567788999999999887766521 1699999999999999999999875
No 123
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.3e-09 Score=122.72 Aligned_cols=146 Identities=16% Similarity=0.209 Sum_probs=98.5
Q ss_pred CcccccHHHHHHHHHHHHHHh-------cCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRR-------TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r-------~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
+.|.|-+..+..++..|...+ .|. +|+-.+||+||||||||.||+|||..+ ..||+.|...+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv--------~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf~~isApe 258 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGV--------RPPRGVLLHGPPGCGKTSLANAIAGEL---GVPFLSISAPE 258 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCC--------CCCCceeeeCCCCccHHHHHHHHhhhc---CCceEeecchh
Confidence 458888888888887776532 233 355579999999999999999999999 89999988775
Q ss_pred CCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH-----------HHHHHHHhhHhCCcc
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV-----------HVQNSLSKAIQTGKL 445 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~-----------~vqn~LLq~LE~G~l 445 (710)
. . .++.|-.+. .++.+++....+..+||||||||.+.| .+...|+..|++=..
T Consensus 259 i----v-------SGvSGESEk-----kiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~ 322 (802)
T KOG0733|consen 259 I----V-------SGVSGESEK-----KIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSN 322 (802)
T ss_pred h----h-------cccCcccHH-----HHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccc
Confidence 2 1 244444432 234444444445569999999998765 456667777775443
Q ss_pred cCCCCeEeecCceEEEEccCCCccccccccccccccch
Q 005186 446 PDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFS 483 (710)
Q Consensus 446 ~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~ 483 (710)
....| ..++||.+||. .+.+..+.. ....|+
T Consensus 323 ~~~~g-----~~VlVIgATnR-PDslDpaLR-RaGRFd 353 (802)
T KOG0733|consen 323 EKTKG-----DPVLVIGATNR-PDSLDPALR-RAGRFD 353 (802)
T ss_pred cccCC-----CCeEEEecCCC-CcccCHHHh-cccccc
Confidence 32223 34889999996 444443332 445565
No 124
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.03 E-value=2.2e-09 Score=120.47 Aligned_cols=137 Identities=18% Similarity=0.126 Sum_probs=81.3
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.|.|.+.++..|..++.........-......++..+||+||+|||||++|++||..+ ..+|+.++.+.. .
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL----~-- 254 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATFLRVVGSEL----I-- 254 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchh----h--
Confidence 4699999999998888643110000000001234478999999999999999999988 567888876642 1
Q ss_pred CCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HHHHHHHHhhHhCCcccCCCCeEe
Q 005186 385 PKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 385 ~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
..|.|... .....+.........+||||||||.+- ..++..|+++|..-.-.+
T Consensus 255 -----~k~~Ge~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~------ 318 (438)
T PTZ00361 255 -----QKYLGDGP-----KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD------ 318 (438)
T ss_pred -----hhhcchHH-----HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc------
Confidence 12333221 122334444445556899999998652 345555555553210000
Q ss_pred ecCceEEEEccCC
Q 005186 454 SVSNAIFVTASSF 466 (710)
Q Consensus 454 d~~n~I~IlTSN~ 466 (710)
.-.+++||+|||.
T Consensus 319 ~~~~V~VI~ATNr 331 (438)
T PTZ00361 319 SRGDVKVIMATNR 331 (438)
T ss_pred ccCCeEEEEecCC
Confidence 1135678888883
No 125
>PRK08727 hypothetical protein; Validated
Probab=99.03 E-value=9.2e-09 Score=106.46 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=48.3
Q ss_pred hHHhcCc--ceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 005186 592 QDFFNQR--VKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGF 669 (710)
Q Consensus 592 ~efl~Ri--D~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~~~L 669 (710)
+++..|+ ..++.|.|++.+++.+++.+....+ .+.++++++++|+..+ ..-.|.+.+.++.+...++
T Consensus 145 ~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~---------~l~l~~e~~~~La~~~--~rd~r~~l~~L~~l~~~~~ 213 (233)
T PRK08727 145 PDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR---------GLALDEAAIDWLLTHG--ERELAGLVALLDRLDRESL 213 (233)
T ss_pred HHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHH
Confidence 4555565 4588999999999999988754331 2789999999999962 2345677778887764343
No 126
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.02 E-value=3.5e-09 Score=115.14 Aligned_cols=148 Identities=18% Similarity=0.136 Sum_probs=83.9
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC------CCcceEEecCCC-
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG------GKENFICADLCP- 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g------s~~~fI~iD~s~- 376 (710)
..|+||++++.++.-++.. . ..+.+||.|++|+|||++|++||..+-. ....++++.+..
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~--~-----------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~ 74 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAID--P-----------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPE 74 (334)
T ss_pred HHhCCHHHHHHHHHHHHhc--c-----------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcc
Confidence 3489999999877654321 1 1247999999999999999999998831 111111111110
Q ss_pred ---CCC-CC-------CCC-CCcccccccccccc---c-cccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhH
Q 005186 377 ---QDG-EM-------NNP-PKFYHQVVGGDSVQ---F-RGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAI 440 (710)
Q Consensus 377 ---~~~-e~-------~~~-~sl~~~~~~G~~~~---f-~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~L 440 (710)
... ++ ... +......++|.-.- . .|.. ..-.+.+.+...+++|||||+.+++.+|+.|+++|
T Consensus 75 ~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~--~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~m 152 (334)
T PRK13407 75 WAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEK--AFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVA 152 (334)
T ss_pred cccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCe--eecCCceEEcCCCeEEecChHhCCHHHHHHHHHHH
Confidence 000 00 000 00111224442110 0 0110 00122333445689999999999999999999999
Q ss_pred hCCcccC-CCCeEeec-CceEEEEccCC
Q 005186 441 QTGKLPD-SYGREVSV-SNAIFVTASSF 466 (710)
Q Consensus 441 E~G~l~d-~~Gr~vd~-~n~I~IlTSN~ 466 (710)
++|.++- ..|....+ ...++|+|.|.
T Consensus 153 ee~~v~v~r~G~~~~~p~rfiviAt~NP 180 (334)
T PRK13407 153 QSGENVVEREGLSIRHPARFVLVGSGNP 180 (334)
T ss_pred HcCCeEEEECCeEEecCCCEEEEecCCc
Confidence 9998431 23333333 25678888774
No 127
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.02 E-value=3e-09 Score=116.95 Aligned_cols=137 Identities=19% Similarity=0.139 Sum_probs=84.3
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.|+|.+++++.|..++.........-......++..+||+||+|||||++|+++|+.+ ..+|+.+..+...
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~~l~------ 193 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELV------ 193 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCEEecchHHHH------
Confidence 5899999999998888643221000000001233469999999999999999999988 5667776554310
Q ss_pred CCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----------CHHHHHHHHhhHhCCcccCCCCeEe
Q 005186 385 PKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 385 ~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-----------~~~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
..|+|... .....+....+....+||||||||.+ ++.++..|.+++..-.-.+
T Consensus 194 -----~~~~g~~~-----~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~------ 257 (364)
T TIGR01242 194 -----RKYIGEGA-----RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD------ 257 (364)
T ss_pred -----HHhhhHHH-----HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC------
Confidence 11222211 11223344444445689999999986 4567777777775321011
Q ss_pred ecCceEEEEccCC
Q 005186 454 SVSNAIFVTASSF 466 (710)
Q Consensus 454 d~~n~I~IlTSN~ 466 (710)
...+++||+|||.
T Consensus 258 ~~~~v~vI~ttn~ 270 (364)
T TIGR01242 258 PRGNVKVIAATNR 270 (364)
T ss_pred CCCCEEEEEecCC
Confidence 1236789999984
No 128
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.01 E-value=6.9e-09 Score=107.52 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=47.8
Q ss_pred hhHHhcCcc--eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 005186 591 LQDFFNQRV--KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVL 665 (710)
Q Consensus 591 ~~efl~RiD--~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl 665 (710)
.|+|..|+. .++.+.|+|.+++.+++.+....+ + +.++++++++|+... ....|.+...++++-
T Consensus 149 ~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~-------~--~~l~~~v~~~L~~~~--~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 149 LPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR-------G--FELPEDVGRFLLKRL--DREMRTLFMTLDQLD 214 (235)
T ss_pred cHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHhh--cCCHHHHHHHHHHHH
Confidence 456777774 588999999999998875544221 2 789999999999962 334678999999864
No 129
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.01 E-value=8.9e-09 Score=112.48 Aligned_cols=146 Identities=14% Similarity=0.098 Sum_probs=84.0
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC------CcceEEecCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG------KENFICADLCP 376 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs------~~~fI~iD~s~ 376 (710)
-+.++|+++.++.|...+..+..+. ....++++||+|+|||.+++++++.+... ...++.+||..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~---------~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGS---------RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCC---------CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4569999999999999998765431 23479999999999999999999877421 14678889875
Q ss_pred CCCCCCCCCCcc---ccccc--cccccccccc---hhhHHHHHHHh-CCCeEEEEeccccCCHHHHHHHHhhHhCCcccC
Q 005186 377 QDGEMNNPPKFY---HQVVG--GDSVQFRGKT---LADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 447 (710)
Q Consensus 377 ~~~e~~~~~sl~---~~~~~--G~~~~f~G~t---~~~~L~~al~~-~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d 447 (710)
... ...++ -..+. |......|.. ....+.+.+.. .+..||+|||+|.+....+..|..+++-.....
T Consensus 85 ~~~----~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~ 160 (365)
T TIGR02928 85 LDT----LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD 160 (365)
T ss_pred CCC----HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC
Confidence 221 11111 00111 2111111211 12334455543 445789999999994322333333332111111
Q ss_pred CCCeEeecCceEEEEccCC
Q 005186 448 SYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 448 ~~Gr~vd~~n~I~IlTSN~ 466 (710)
..-.++++|+++|.
T Consensus 161 -----~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 161 -----LDNAKVGVIGISND 174 (365)
T ss_pred -----CCCCeEEEEEEECC
Confidence 11135678887773
No 130
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.3e-09 Score=115.74 Aligned_cols=133 Identities=18% Similarity=0.186 Sum_probs=87.8
Q ss_pred cCcccccHHHHHHHHHHHHHHhcC--CCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTG--HEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGE 380 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g--~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e 380 (710)
++.|-|-|+|..++.+.+.-.+.- +..-+| |-+--+||.||||+|||.||||+|-.- +.||.+...++.+.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGG---KLPKGVLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEFdE- 375 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGG---KLPKGVLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEFDE- 375 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccC---cCCCceEEeCCCCCchhHHHHHhhccc---CCCeEeccccchhh-
Confidence 678999999998887777544321 111111 223468999999999999999999765 78888876665322
Q ss_pred CCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HHHHHHHHhhHhCCcccCCC
Q 005186 381 MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 381 ~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~vqn~LLq~LE~G~l~d~~ 449 (710)
-|+|. |..-+..|+.+.+.+..+||||||||... ....|.||--|+.-. -+
T Consensus 376 ----------m~VGv-----GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~--qN- 437 (752)
T KOG0734|consen 376 ----------MFVGV-----GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK--QN- 437 (752)
T ss_pred ----------hhhcc-----cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC--cC-
Confidence 23442 33344567777777777999999999653 134455555554221 11
Q ss_pred CeEeecCceEEEEccCC
Q 005186 450 GREVSVSNAIFVTASSF 466 (710)
Q Consensus 450 Gr~vd~~n~I~IlTSN~ 466 (710)
..+|||.+||.
T Consensus 438 ------eGiIvigATNf 448 (752)
T KOG0734|consen 438 ------EGIIVIGATNF 448 (752)
T ss_pred ------CceEEEeccCC
Confidence 25888889995
No 131
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.01 E-value=3.6e-09 Score=115.22 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=84.1
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHc----------C---CCcceE
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY----------G---GKENFI 370 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~----------g---s~~~fI 370 (710)
..|+||++++.++.-++.. + ..+++++.|++|+|||+++++|+..+- + ....++
T Consensus 4 ~~ivgq~~~~~al~~~~~~-------~------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVID-------P------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMM 70 (337)
T ss_pred cccccHHHHHHHHHHHhcC-------C------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcccc
Confidence 4689999998876544431 1 235899999999999999999999882 1 111122
Q ss_pred EecCCCCCCCCCCC----------CCcccc-----cccccccc---c-cccchhhHHHHHHHhCCCeEEEEeccccCCHH
Q 005186 371 CADLCPQDGEMNNP----------PKFYHQ-----VVGGDSVQ---F-RGKTLADYVAWELLKKPLSVVYLENVDKADVH 431 (710)
Q Consensus 371 ~iD~s~~~~e~~~~----------~sl~~~-----~~~G~~~~---f-~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~ 431 (710)
+.+|..... +.+. .. .|. .++|...- . .|... .-.+.+.+...+|+|||||+.+++.
T Consensus 71 ~~~~r~~~~-~~~~~~~~~~~~~~~~-lP~~~t~d~l~G~~d~~~~l~~g~~~--~~~GlL~~A~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 71 CEEVRIRVD-SQEPLSIIKKPVPVVD-LPLGATEDRVCGTLDIERALTEGVKA--FEPGLLARANRGILYIDEVNLLEDH 146 (337)
T ss_pred ChHHhhhhh-cccccccccCCCCcCC-CCCCCcccceecchhHhhHhhcCCEE--eecCcceeccCCEEEecChHhCCHH
Confidence 222221100 0000 00 111 23332110 0 01000 0112334455689999999999999
Q ss_pred HHHHHHhhHhCCcccC-CCCeEeec-CceEEEEccCC
Q 005186 432 VQNSLSKAIQTGKLPD-SYGREVSV-SNAIFVTASSF 466 (710)
Q Consensus 432 vqn~LLq~LE~G~l~d-~~Gr~vd~-~n~I~IlTSN~ 466 (710)
+|+.|+++|++|..+- ..|....+ .+.++|.|.|.
T Consensus 147 ~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np 183 (337)
T TIGR02030 147 LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNP 183 (337)
T ss_pred HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccc
Confidence 9999999999986321 23433333 24677777774
No 132
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.00 E-value=2.3e-09 Score=125.18 Aligned_cols=53 Identities=25% Similarity=0.301 Sum_probs=43.6
Q ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC
Q 005186 297 TLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG 364 (710)
Q Consensus 297 ~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g 364 (710)
.+.+.|.+.|+||++++..+..++... ..++|+||+|+|||++|++|++.+..
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~~---------------~~~ll~G~pG~GKT~la~~la~~l~~ 63 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQK---------------RNVLLIGEPGVGKSMLAKAMAELLPD 63 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHcC---------------CCEEEECCCCCCHHHHHHHHHHHcCc
Confidence 345678999999999998877776521 16889999999999999999998854
No 133
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.00 E-value=7.1e-10 Score=112.20 Aligned_cols=143 Identities=18% Similarity=0.204 Sum_probs=80.2
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
..|+||+.|++++.-+. +| .+.+||.||+|+|||++|++|+..|-. +-.-.+-+... ..+
T Consensus 3 ~dI~GQe~aKrAL~iAA----aG-----------~h~lLl~GppGtGKTmlA~~l~~lLP~----l~~~e~le~~~-i~s 62 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAA----AG-----------GHHLLLIGPPGTGKTMLARRLPSLLPP----LTEEEALEVSK-IYS 62 (206)
T ss_dssp CCSSSTHHHHHHHHHHH----HC-----------C--EEEES-CCCTHHHHHHHHHHCS------CCEECCESS---S-T
T ss_pred hhhcCcHHHHHHHHHHH----cC-----------CCCeEEECCCCCCHHHHHHHHHHhCCC----CchHHHhhhcc-ccc
Confidence 57999999997765544 32 238999999999999999999987731 11111111000 000
Q ss_pred CCCcc-cccccccccccc------------ccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCC-C
Q 005186 384 PPKFY-HQVVGGDSVQFR------------GKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS-Y 449 (710)
Q Consensus 384 ~~sl~-~~~~~G~~~~f~------------G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~-~ 449 (710)
...+. ...+. ...-|+ |... ...-+++..+.++|+||||+-..++.+.+.|++.||+|+++-. .
T Consensus 63 ~~~~~~~~~~~-~~~Pfr~phhs~s~~~liGgg~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~ 140 (206)
T PF01078_consen 63 VAGLGPDEGLI-RQRPFRAPHHSASEAALIGGGR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRA 140 (206)
T ss_dssp T---S---EEE-E---EEEE-TT--HHHHHEEGG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEET
T ss_pred cccCCCCCcee-cCCCcccCCCCcCHHHHhCCCc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEEC
Confidence 00000 00000 000011 1100 0112355667789999999999999999999999999987653 3
Q ss_pred CeEeec-CceEEEEccCCCc
Q 005186 450 GREVSV-SNAIFVTASSFVE 468 (710)
Q Consensus 450 Gr~vd~-~n~I~IlTSN~g~ 468 (710)
|..+.+ .+.++|+|.|-..
T Consensus 141 ~~~~~~Pa~f~lv~a~NPcp 160 (206)
T PF01078_consen 141 GGSVTYPARFLLVAAMNPCP 160 (206)
T ss_dssp TEEEEEB--EEEEEEE-S--
T ss_pred CceEEEecccEEEEEecccc
Confidence 444444 4788999999643
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.00 E-value=6.2e-09 Score=124.34 Aligned_cols=121 Identities=19% Similarity=0.287 Sum_probs=80.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC-------CcceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs-------~~~fI~iD~s~ 376 (710)
+.|+||++.+..+...+.+. ...+++|+||||||||.+|++||+.+... +..++.+|++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~-------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~ 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR-------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC-------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence 57999999888777665321 22378999999999999999999987432 34466677653
Q ss_pred CCCCCCCCCCccccccccccccccccc--hhhHHHHHHHhCCCeEEEEeccccCC---------HHHHHHHHhhHhCCcc
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKT--LADYVAWELLKKPLSVVYLENVDKAD---------VHVQNSLSKAIQTGKL 445 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t--~~~~L~~al~~~p~sVI~LDEIDKa~---------~~vqn~LLq~LE~G~l 445 (710)
.- ....|+|.. ....+.+.+.+....|||||||+.+- .++++.|+.+|++|.
T Consensus 249 l~----------------a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~- 311 (731)
T TIGR02639 249 LL----------------AGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK- 311 (731)
T ss_pred Hh----------------hhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC-
Confidence 10 001123311 11223333344556899999999763 567899999988664
Q ss_pred cCCCCeEeecCceEEEEccCC
Q 005186 446 PDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 446 ~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
..+|.+||.
T Consensus 312 ------------i~~IgaTt~ 320 (731)
T TIGR02639 312 ------------LRCIGSTTY 320 (731)
T ss_pred ------------eEEEEecCH
Confidence 337888873
No 135
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.00 E-value=1.8e-08 Score=107.95 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=51.5
Q ss_pred hcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 302 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 302 L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
..+.++||.+|-++..-.++..+.|--. --.+||.||+|+|||.||-+||+.| |.+.||+.+..++
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~a--------GrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~~isgsE 102 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMA--------GRGILIVGPPGTGKTALAMGIAREL-GEDVPFVAISGSE 102 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCccc--------ccEEEEECCCCCcHHHHHHHHHHHh-CCCCCceeeccce
Confidence 3567999999877655555555554211 1279999999999999999999999 8889999987774
No 136
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.98 E-value=3.6e-08 Score=107.32 Aligned_cols=113 Identities=10% Similarity=0.060 Sum_probs=71.9
Q ss_pred CCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHH--
Q 005186 336 RRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL-- 413 (710)
Q Consensus 336 r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~-- 413 (710)
+++..++|+||+|||||.+|++||..+ +.+|+.++.++.. ..|+|..+. .+...+..|-.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~-----------sk~vGEsEk----~IR~~F~~A~~~a 207 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELE-----------SENAGEPGK----LIRQRYREAADII 207 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhh-----------cCcCCcHHH----HHHHHHHHHHHHh
Confidence 567799999999999999999999999 7789999998632 245554432 22222322321
Q ss_pred --hCCCeEEEEeccccCCH-----------H-HHHHHHhhHhCCcccCCCC---eEeecCceEEEEccCC
Q 005186 414 --KKPLSVVYLENVDKADV-----------H-VQNSLSKAIQTGKLPDSYG---REVSVSNAIFVTASSF 466 (710)
Q Consensus 414 --~~p~sVI~LDEIDKa~~-----------~-vqn~LLq~LE~G~l~d~~G---r~vd~~n~I~IlTSN~ 466 (710)
+...+||||||||.+-+ . +...|+..|+.-...--.| ..-...+++||+|||.
T Consensus 208 ~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr 277 (413)
T PLN00020 208 KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND 277 (413)
T ss_pred hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC
Confidence 23459999999997543 1 2356777776411000000 0012356889999995
No 137
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.98 E-value=8.4e-09 Score=121.21 Aligned_cols=143 Identities=10% Similarity=0.090 Sum_probs=90.0
Q ss_pred hcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC----C---CcceEEecC
Q 005186 302 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG----G---KENFICADL 374 (710)
Q Consensus 302 L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g----s---~~~fI~iD~ 374 (710)
+-+.+.|.++-++.|..+|..+..+.. +...++++|+||||||.+++.+.+.|-. . ...+++|||
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsg--------pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSG--------SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCC--------CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 357799999999999999987765311 2236789999999999999988876631 1 145788999
Q ss_pred CCCCCCCCCCCCcc---cccccccccccccc---chhhHHHHHHHh--CCCeEEEEeccccCCHHHHHHHHhhHhCCccc
Q 005186 375 CPQDGEMNNPPKFY---HQVVGGDSVQFRGK---TLADYVAWELLK--KPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 446 (710)
Q Consensus 375 s~~~~e~~~~~sl~---~~~~~G~~~~f~G~---t~~~~L~~al~~--~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~ 446 (710)
... .....++ ...+.|..+ ..|. ..+..++..+.. ....||+|||||.+...-|..|+++++--...
T Consensus 825 m~L----stp~sIYqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s 899 (1164)
T PTZ00112 825 MNV----VHPNAAYQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKI 899 (1164)
T ss_pred Ccc----CCHHHHHHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhcc
Confidence 642 1121111 111222211 1222 122334444322 23458999999999877788899888742211
Q ss_pred CCCCeEeecCceEEEEccC
Q 005186 447 DSYGREVSVSNAIFVTASS 465 (710)
Q Consensus 447 d~~Gr~vd~~n~I~IlTSN 465 (710)
+ ..++||..+|
T Consensus 900 ---~-----SKLiLIGISN 910 (1164)
T PTZ00112 900 ---N-----SKLVLIAISN 910 (1164)
T ss_pred ---C-----CeEEEEEecC
Confidence 1 2467888888
No 138
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.98 E-value=3.8e-09 Score=103.46 Aligned_cols=131 Identities=21% Similarity=0.256 Sum_probs=77.1
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcce-EEecCCCC---CCCCCC
Q 005186 308 WQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF-ICADLCPQ---DGEMNN 383 (710)
Q Consensus 308 GQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~f-I~iD~s~~---~~e~~~ 383 (710)
||+++++.+...+...+ -+..+||+||+|+||+++|+++|+.+++....- .+-.|... .. ...
T Consensus 1 gq~~~~~~L~~~~~~~~------------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~-~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR------------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEE-GNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHT-T-C
T ss_pred CcHHHHHHHHHHHHcCC------------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHh-ccC
Confidence 89999988888875332 345899999999999999999999998654321 11111100 00 000
Q ss_pred CCCcccccccccccc--ccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCc
Q 005186 384 PPKFYHQVVGGDSVQ--FRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSN 457 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~--f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n 457 (710)
. ++. ++..... ..+......+.+.+.. .++.|++|||+|+|..++||+||+.||+-- .+
T Consensus 68 ~-d~~---~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp-----------~~ 132 (162)
T PF13177_consen 68 P-DFI---IIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPP-----------EN 132 (162)
T ss_dssp T-TEE---EEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT-----------TT
T ss_pred c-ceE---EEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCC-----------CC
Confidence 0 000 0000000 0111111223333332 356799999999999999999999999753 47
Q ss_pred eEEEEccCC
Q 005186 458 AIFVTASSF 466 (710)
Q Consensus 458 ~I~IlTSN~ 466 (710)
++||++|+-
T Consensus 133 ~~fiL~t~~ 141 (162)
T PF13177_consen 133 TYFILITNN 141 (162)
T ss_dssp EEEEEEES-
T ss_pred EEEEEEECC
Confidence 888888874
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.98 E-value=1e-08 Score=124.01 Aligned_cols=121 Identities=19% Similarity=0.226 Sum_probs=78.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCC-------cceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK-------ENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~-------~~fI~iD~s~ 376 (710)
+.|+||++.++.+...+.+. ...+++|+||+|||||.+|+.||+.+.... ..++.+|++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~-------------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~ 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR-------------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC-------------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh
Confidence 56999999887777665321 223789999999999999999999874322 3366677764
Q ss_pred CCCCCCCCCCccccccccccccccccc--hhhHHHHHHHh-CCCeEEEEeccccCC--------HHHHHHHHhhHhCCcc
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKT--LADYVAWELLK-KPLSVVYLENVDKAD--------VHVQNSLSKAIQTGKL 445 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t--~~~~L~~al~~-~p~sVI~LDEIDKa~--------~~vqn~LLq~LE~G~l 445 (710)
... ...|+|.. .+..+.+.+.+ ....|||||||+.+. .++-+.|+.+|+.|.+
T Consensus 254 l~a----------------g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l 317 (852)
T TIGR03345 254 LQA----------------GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGEL 317 (852)
T ss_pred hhc----------------ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCe
Confidence 110 01223221 11223333332 345799999999874 2455678888887753
Q ss_pred cCCCCeEeecCceEEEEccCC
Q 005186 446 PDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 446 ~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.+|.||+.
T Consensus 318 -------------~~IgaTT~ 325 (852)
T TIGR03345 318 -------------RTIAATTW 325 (852)
T ss_pred -------------EEEEecCH
Confidence 38888873
No 140
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.98 E-value=2e-09 Score=100.83 Aligned_cols=112 Identities=18% Similarity=0.274 Sum_probs=80.1
Q ss_pred HhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC--CcceE
Q 005186 293 SNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG--KENFI 370 (710)
Q Consensus 293 ~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs--~~~fI 370 (710)
.++..|++.|++.++||.-|++.|..+|....... .+ +.+.++.|+|++||||+.+++.||+.||.. ..+++
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~-~p-----~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V 87 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP-NP-----RKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFV 87 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC-CC-----CCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCce
Confidence 36789999999999999999999999999887642 23 356899999999999999999999999843 55666
Q ss_pred EecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEE
Q 005186 371 CADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYL 422 (710)
Q Consensus 371 ~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~L 422 (710)
..=.+.. +|..... -..|. ..+...+.+.+...|.++++|
T Consensus 88 ~~f~~~~--hFP~~~~---------v~~Yk-~~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 88 HQFIATH--HFPHNSN---------VDEYK-EQLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred eeecccc--cCCCchH---------HHHHH-HHHHHHHHHHHHhCCcCeeeC
Confidence 5433310 0111110 01111 123356778888899998875
No 141
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1e-08 Score=117.04 Aligned_cols=133 Identities=17% Similarity=0.121 Sum_probs=84.4
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 385 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~ 385 (710)
+.|-+.+...+.+++.........-.....++...+||+||||||||++|+++|..+ +.+|+.++++.+..
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~s------ 314 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLS------ 314 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHhc------
Confidence 455566666666666543221110000011345589999999999999999999977 78999999985321
Q ss_pred CccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HHHHHHHHhhHhCCcccCCCCeEee
Q 005186 386 KFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 386 sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
.|+|-.+. ....+....++...+||||||||++- ..+.+.|+..|+.-. .
T Consensus 315 -----k~vGesek-----~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~ 375 (494)
T COG0464 315 -----KWVGESEK-----NIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------K 375 (494)
T ss_pred -----cccchHHH-----HHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC---------c
Confidence 34443322 22344444455556999999999863 257777777775322 1
Q ss_pred cCceEEEEccCC
Q 005186 455 VSNAIFVTASSF 466 (710)
Q Consensus 455 ~~n~I~IlTSN~ 466 (710)
..++++|.|||.
T Consensus 376 ~~~v~vi~aTN~ 387 (494)
T COG0464 376 AEGVLVIAATNR 387 (494)
T ss_pred cCceEEEecCCC
Confidence 245778888884
No 142
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.7e-09 Score=121.82 Aligned_cols=127 Identities=19% Similarity=0.171 Sum_probs=89.8
Q ss_pred CcccccHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~--------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+.|.++++.-.++..+|.+. +.|+. .+..+||+||||||||.||+|+|+.. ..+||.+-..
T Consensus 511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~--------~PsGvLL~GPPGCGKTLlAKAVANEa---g~NFisVKGP 579 (802)
T KOG0733|consen 511 DDIGALEEVRLELNMAILAPIKRPDLFKALGID--------APSGVLLCGPPGCGKTLLAKAVANEA---GANFISVKGP 579 (802)
T ss_pred hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC--------CCCceEEeCCCCccHHHHHHHHhhhc---cCceEeecCH
Confidence 44778888877777777543 23433 34589999999999999999999987 7889988666
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH-----------HHHHHHHhhHhCCc
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV-----------HVQNSLSKAIQTGK 444 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~-----------~vqn~LLq~LE~G~ 444 (710)
+.- ..|+|-.+. .+..++...+.+..+||||||||.+-| .+.|.||--|+...
T Consensus 580 ELl-----------NkYVGESEr-----AVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~ 643 (802)
T KOG0733|consen 580 ELL-----------NKYVGESER-----AVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE 643 (802)
T ss_pred HHH-----------HHHhhhHHH-----HHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc
Confidence 421 245555442 223344444555569999999998743 68888988887432
Q ss_pred ccCCCCeEeecCceEEEEccCC
Q 005186 445 LPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 445 l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
+ -+++.||.+||.
T Consensus 644 -----~----R~gV~viaATNR 656 (802)
T KOG0733|consen 644 -----E----RRGVYVIAATNR 656 (802)
T ss_pred -----c----ccceEEEeecCC
Confidence 1 146789999996
No 143
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1.3e-08 Score=111.56 Aligned_cols=136 Identities=16% Similarity=0.159 Sum_probs=81.6
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc----ceE-EecCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFI-CADLCPQD 378 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~----~fI-~iD~s~~~ 378 (710)
..|+||++++..+..++...+ -+..+||+||.|+|||++|+.+|+.+..... +.. ...|....
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr------------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~ 90 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK------------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASP 90 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC------------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCH
Confidence 459999999999888876332 3458999999999999999999999976321 110 01111100
Q ss_pred C--CCCCCCCcccccc--ccc--ccc------ccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhC
Q 005186 379 G--EMNNPPKFYHQVV--GGD--SVQ------FRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQT 442 (710)
Q Consensus 379 ~--e~~~~~sl~~~~~--~G~--~~~------f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~ 442 (710)
. .+... ..|.+ +.. +.. ..+-..+..+.+.+.. ..+.||+|||+|+|+...+|.||+.||+
T Consensus 91 ~c~~i~~~---~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE 167 (351)
T PRK09112 91 VWRQIAQG---AHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (351)
T ss_pred HHHHHHcC---CCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc
Confidence 0 00000 01111 000 000 0011111233344432 3567999999999999999999999997
Q ss_pred CcccCCCCeEeecCceEEEEccC
Q 005186 443 GKLPDSYGREVSVSNAIFVTASS 465 (710)
Q Consensus 443 G~l~d~~Gr~vd~~n~I~IlTSN 465 (710)
.. .+++||+.|+
T Consensus 168 pp-----------~~~~fiLit~ 179 (351)
T PRK09112 168 PP-----------ARALFILISH 179 (351)
T ss_pred CC-----------CCceEEEEEC
Confidence 42 3566777665
No 144
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.2e-09 Score=112.10 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=77.3
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKP 416 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p 416 (710)
|+..+|++||||||||+||+++|..- ...||++..++ |. +.|.|..+ ..+..++...+++.
T Consensus 188 pprgvllygppg~gktml~kava~~t---~a~firvvgse----fv-------qkylgegp-----rmvrdvfrlakena 248 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSE----FV-------QKYLGEGP-----RMVRDVFRLAKENA 248 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHH----HH-------HHHhccCc-----HHHHHHHHHHhccC
Confidence 44479999999999999999999866 67899998885 22 23444332 33455666777788
Q ss_pred CeEEEEecccc-----------CCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 417 LSVVYLENVDK-----------ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 417 ~sVI~LDEIDK-----------a~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.+||||||||. ++.+||..|+.+|..= |+.... .|+-+||+||.
T Consensus 249 psiifideidaiatkrfdaqtgadrevqril~ellnqm---dgfdq~---~nvkvimatnr 303 (408)
T KOG0727|consen 249 PSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQM---DGFDQT---TNVKVIMATNR 303 (408)
T ss_pred CcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhc---cCcCcc---cceEEEEecCc
Confidence 89999999995 5679999999998632 111122 35669999996
No 145
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.94 E-value=1e-08 Score=117.28 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=81.3
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.|+|+++++..+...+...+....... ...+.+..+||+||+|||||++|++||..+ ..+|+.++++...
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~-~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~------ 125 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTK-LGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFV------ 125 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHh-cCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHH------
Confidence 489999998888776654321100000 001234479999999999999999999987 6788888776411
Q ss_pred CCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH--------------HHHHHHHhhHhCCcccCCCC
Q 005186 385 PKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV--------------HVQNSLSKAIQTGKLPDSYG 450 (710)
Q Consensus 385 ~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~--------------~vqn~LLq~LE~G~l~d~~G 450 (710)
..+.|.. ......+....+....+||||||||.+.. .+.+.|+..|+.- ..
T Consensus 126 -----~~~~g~~-----~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~--~~--- 190 (495)
T TIGR01241 126 -----EMFVGVG-----ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF--GT--- 190 (495)
T ss_pred -----HHHhccc-----HHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc--cC---
Confidence 1122211 11223344444455568999999998632 3445555555421 11
Q ss_pred eEeecCceEEEEccCC
Q 005186 451 REVSVSNAIFVTASSF 466 (710)
Q Consensus 451 r~vd~~n~I~IlTSN~ 466 (710)
-.+++||.|||.
T Consensus 191 ----~~~v~vI~aTn~ 202 (495)
T TIGR01241 191 ----NTGVIVIAATNR 202 (495)
T ss_pred ----CCCeEEEEecCC
Confidence 134788888985
No 146
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3.1e-08 Score=107.12 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=80.9
Q ss_pred CcccccHHHHHHHHHHHHHH------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQR------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ 377 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~ 377 (710)
..|.|-.+|++.|.+++... ..|++.| =-.+|++||||+|||+||+|+|-.. ..-|..|.-+..
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrP-------WkgvLm~GPPGTGKTlLAKAvATEc---~tTFFNVSsstl 281 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRP-------WKGVLMVGPPGTGKTLLAKAVATEC---GTTFFNVSSSTL 281 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccc-------cceeeeeCCCCCcHHHHHHHHHHhh---cCeEEEechhhh
Confidence 34888899999999988643 3454433 3479999999999999999999876 445554443321
Q ss_pred CCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEecccc------------CCHHHHHHHHhhHh
Q 005186 378 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDK------------ADVHVQNSLSKAIQ 441 (710)
Q Consensus 378 ~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDK------------a~~~vqn~LLq~LE 441 (710)
-..|.|..+ .++..|++..+....++|||||||. ++..|-+.||.-|+
T Consensus 282 -----------tSKwRGeSE-----KlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD 341 (491)
T KOG0738|consen 282 -----------TSKWRGESE-----KLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD 341 (491)
T ss_pred -----------hhhhccchH-----HHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh
Confidence 123334332 3567788888877779999999985 45678899999887
No 147
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.94 E-value=1.6e-08 Score=120.45 Aligned_cols=156 Identities=9% Similarity=0.058 Sum_probs=100.5
Q ss_pred hHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCC----CCCCC----CCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 294 NWKTLFRALTEKIDWQDEAISVISQTIAQRRTGH----EDHHG----ASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 294 ~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~----~~~~~----~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
-+..|.+.+.-.|+|++.++.+|.-++.-..... ..+.+ ..-|.+.++||+|+||+||+.+|+++++...+.
T Consensus 440 i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~ 519 (915)
T PTZ00111 440 IYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRS 519 (915)
T ss_pred HHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcc
Confidence 4556677778889999999888765553221000 00111 223678899999999999999999999865322
Q ss_pred ----CcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHh
Q 005186 366 ----KENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQ 441 (710)
Q Consensus 366 ----~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE 441 (710)
..++..++|..... +.+.. .|.. ..-.+++..+..++++||||++|++..|..|+++||
T Consensus 520 ~ytsG~~~s~vgLTa~~~------------~~d~~---tG~~--~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaME 582 (915)
T PTZ00111 520 IYTSGKSSSSVGLTASIK------------FNESD---NGRA--MIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVME 582 (915)
T ss_pred ccCCCCCCccccccchhh------------hcccc---cCcc--cccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHh
Confidence 24555555543100 00000 0110 011234455667899999999999999999999999
Q ss_pred CCcccCC-CCeEeec-CceEEEEccCC
Q 005186 442 TGKLPDS-YGREVSV-SNAIFVTASSF 466 (710)
Q Consensus 442 ~G~l~d~-~Gr~vd~-~n~I~IlTSN~ 466 (710)
.+.+.-. .|-...+ .++.||+|+|-
T Consensus 583 qqtIsI~KaGi~~tL~ar~rVIAAaNP 609 (915)
T PTZ00111 583 QQTVTIAKAGIVATLKAETAILASCNP 609 (915)
T ss_pred CCEEEEecCCcceecCCCeEEEEEcCC
Confidence 9987532 3433333 36889999996
No 148
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.93 E-value=5.9e-09 Score=118.81 Aligned_cols=138 Identities=19% Similarity=0.145 Sum_probs=77.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC-------CcceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs-------~~~fI~iD~s~ 376 (710)
+.|.|.+..++.|..+|.........-.....+++..+||+||||||||++|+++|+.+... ...|+.+..+.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 34889999999999888642110000000001234479999999999999999999988321 11122222221
Q ss_pred CCCCCCCCCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCH------------HHHHHHHhhH
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADV------------HVQNSLSKAI 440 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~------------~vqn~LLq~L 440 (710)
+. ..|+|... .....+....+. ...+||||||||.+-. .+.+.|+..|
T Consensus 262 ----------Ll-~kyvGete-----~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 262 ----------LL-NKYVGETE-----RQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ----------hc-ccccchHH-----HHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 00 11222211 112233333332 2468999999997621 2345666666
Q ss_pred hCCcccCCCCeEeecCceEEEEccCC
Q 005186 441 QTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 441 E~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
+.-. ...+++||+|||.
T Consensus 326 Dgl~---------~~~~ViVI~ATN~ 342 (512)
T TIGR03689 326 DGVE---------SLDNVIVIGASNR 342 (512)
T ss_pred cccc---------cCCceEEEeccCC
Confidence 5311 1246889999995
No 149
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.89 E-value=3.8e-09 Score=100.27 Aligned_cols=109 Identities=21% Similarity=0.181 Sum_probs=81.8
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCC
Q 005186 307 DWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPK 386 (710)
Q Consensus 307 iGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~s 386 (710)
+|+..+++.+.+.+..... ...+++++|++|+||+.+|++|+........+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~-----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK-----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC-----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHHhC-----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 5888999999999987764 235899999999999999999999776666777777776310
Q ss_pred ccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 387 FYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 387 l~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.+.+.....++|||+|||.+++..|..|+++|+... . .++.+|+||..
T Consensus 62 ----------------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~--~--------~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 ----------------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE--R--------SNVRLIASSSQ 109 (138)
T ss_dssp ----------------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT--T--------TTSEEEEEECC
T ss_pred ----------------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC--C--------CCeEEEEEeCC
Confidence 123334567899999999999999999999998743 1 34569998885
No 150
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.86 E-value=5.8e-08 Score=96.71 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=65.5
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCc----ce-EEecCCCCC-CCCCCCCCccccccccccccccccchhhHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NF-ICADLCPQD-GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAW 410 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~----~f-I~iD~s~~~-~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~ 410 (710)
-...+||+||+|+|||++|+++++.+.+... +. .+.+|.... .++.+.+ ++.....-.+......+.+
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~------~~~~~~~~~~~~~i~~i~~ 86 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH------RLEPEGQSIKVDQVRELVE 86 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE------EeccccCcCCHHHHHHHHH
Confidence 3468999999999999999999999975311 00 001111000 0000000 0000000011111222344
Q ss_pred HHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccC
Q 005186 411 ELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASS 465 (710)
Q Consensus 411 al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN 465 (710)
.+.. .++.||||||+|+++...++.|++.||+.. .+++||+++|
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~-----------~~~~~il~~~ 134 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPP-----------PNTLFILITP 134 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCC-----------CCeEEEEEEC
Confidence 4443 346799999999999999999999998632 3567888776
No 151
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.86 E-value=7e-08 Score=106.65 Aligned_cols=142 Identities=18% Similarity=0.139 Sum_probs=86.8
Q ss_pred hcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC--CcceEEecCCCCCC
Q 005186 302 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG--KENFICADLCPQDG 379 (710)
Q Consensus 302 L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs--~~~fI~iD~s~~~~ 379 (710)
+-+.++|.++-++.|...+.....+. ....++++||+|+|||.+++.+++.+... ...+++++|.....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~---------~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGS---------RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 34668999999999999987664421 22368999999999999999999877432 35688899875221
Q ss_pred CCCCCCCcc---cccccccccccccc---chhhHHHHHHHh-CCCeEEEEeccccCC----HHHHHHHHhhHhCCcccCC
Q 005186 380 EMNNPPKFY---HQVVGGDSVQFRGK---TLADYVAWELLK-KPLSVVYLENVDKAD----VHVQNSLSKAIQTGKLPDS 448 (710)
Q Consensus 380 e~~~~~sl~---~~~~~G~~~~f~G~---t~~~~L~~al~~-~p~sVI~LDEIDKa~----~~vqn~LLq~LE~G~l~d~ 448 (710)
...++ -..+.+.....+|. .....+.+.+.+ ....||+|||||.+. .++...|++.++.-
T Consensus 99 ----~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~----- 169 (394)
T PRK00411 99 ----RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY----- 169 (394)
T ss_pred ----HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-----
Confidence 11111 01111111111221 223444555544 345789999999875 45566666655532
Q ss_pred CCeEeecCceEEEEccCC
Q 005186 449 YGREVSVSNAIFVTASSF 466 (710)
Q Consensus 449 ~Gr~vd~~n~I~IlTSN~ 466 (710)
.+ .++.+|+++|-
T Consensus 170 ~~-----~~v~vI~i~~~ 182 (394)
T PRK00411 170 PG-----ARIGVIGISSD 182 (394)
T ss_pred CC-----CeEEEEEEECC
Confidence 11 25668887773
No 152
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.5e-08 Score=108.25 Aligned_cols=137 Identities=17% Similarity=0.078 Sum_probs=82.0
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEe-----cCCCCC-
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICA-----DLCPQD- 378 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~i-----D~s~~~- 378 (710)
.++++++++..+...+..... .+..+||+||+|+|||.+|.+||+.+++........ .|....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~-----------~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR-----------LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC-----------CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 467777777776666653321 223699999999999999999999998654211110 000000
Q ss_pred CCCCCCCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 379 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 379 ~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
+.+.+...+.+....+.+ .....+..+.+.... .++.||+|||+|.++.+.+|+|++.||+..
T Consensus 71 ~~~~d~lel~~s~~~~~~---i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~---------- 137 (325)
T COG0470 71 GNHPDFLELNPSDLRKID---IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPP---------- 137 (325)
T ss_pred cCCCceEEecccccCCCc---chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCC----------
Confidence 000011111111111111 011112233333322 346899999999999999999999999753
Q ss_pred cCceEEEEccCC
Q 005186 455 VSNAIFVTASSF 466 (710)
Q Consensus 455 ~~n~I~IlTSN~ 466 (710)
.++.||++||.
T Consensus 138 -~~~~~il~~n~ 148 (325)
T COG0470 138 -KNTRFILITND 148 (325)
T ss_pred -CCeEEEEEcCC
Confidence 57889999994
No 153
>PRK05642 DNA replication initiation factor; Validated
Probab=98.83 E-value=1.1e-07 Score=98.63 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=46.5
Q ss_pred hHHhcCcc--eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 005186 592 QDFFNQRV--KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLV 666 (710)
Q Consensus 592 ~efl~RiD--~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~ 666 (710)
+++..|+. .++.+.|++.+++.+++.+....+ + +.++++++++|+.. + ..-.|.++..|+.+-.
T Consensus 149 ~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~-------~--~~l~~ev~~~L~~~-~-~~d~r~l~~~l~~l~~ 214 (234)
T PRK05642 149 PDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR-------G--LHLTDEVGHFILTR-G-TRSMSALFDLLERLDQ 214 (234)
T ss_pred ccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHh-c-CCCHHHHHHHHHHHHH
Confidence 45566662 467789999999999887543221 2 77899999999996 2 3345789999998864
No 154
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.4e-08 Score=111.81 Aligned_cols=139 Identities=15% Similarity=0.141 Sum_probs=82.2
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc-c---eE--------E
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE-N---FI--------C 371 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~-~---fI--------~ 371 (710)
..|+||+++++.+..++...+ -...+||+||+|+||+++|.++|+.++.... . +. +
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r------------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~ 86 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR------------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID 86 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC------------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC
Confidence 359999999999988876433 3458999999999999999999999975331 0 00 0
Q ss_pred ecCCCCC----CCCCCCCCccccccccccccccccchhhHH---HHHHHh----CCCeEEEEeccccCCHHHHHHHHhhH
Q 005186 372 ADLCPQD----GEMNNPPKFYHQVVGGDSVQFRGKTLADYV---AWELLK----KPLSVVYLENVDKADVHVQNSLSKAI 440 (710)
Q Consensus 372 iD~s~~~----~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L---~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~L 440 (710)
-+|.... +.+.+.+.+ .+.+-+....+...-.++.+ .+.+.. ..+.||+|||+|.|++..+|.|++.+
T Consensus 87 ~~c~~c~~i~~~~HPDl~~i-~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~L 165 (365)
T PRK07471 87 PDHPVARRIAAGAHGGLLTL-ERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVL 165 (365)
T ss_pred CCChHHHHHHccCCCCeEEE-ecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHH
Confidence 0111100 000000001 11000000000000012333 333322 34579999999999999999999999
Q ss_pred hCCcccCCCCeEeecCceEEEEccCC
Q 005186 441 QTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 441 E~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
|+-. .+++||++|+.
T Consensus 166 Eepp-----------~~~~~IL~t~~ 180 (365)
T PRK07471 166 EEPP-----------ARSLFLLVSHA 180 (365)
T ss_pred hcCC-----------CCeEEEEEECC
Confidence 9642 35667777764
No 155
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.9e-08 Score=110.43 Aligned_cols=140 Identities=15% Similarity=0.142 Sum_probs=86.0
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC-CcceEEecCC-CCCCC--
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLC-PQDGE-- 380 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs-~~~fI~iD~s-~~~~e-- 380 (710)
.|+||+.|++++.-+ .+| -.++||+||||+|||++|+.|...|--- ...++.+.+= .+..+
T Consensus 180 DV~GQ~~AKrAleiA----AAG-----------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~ 244 (490)
T COG0606 180 DVKGQEQAKRALEIA----AAG-----------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLH 244 (490)
T ss_pred hhcCcHHHHHHHHHH----Hhc-----------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccccc
Confidence 499999999776443 332 2379999999999999999877655210 0001100000 00000
Q ss_pred ----------CCCCC-CccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCC
Q 005186 381 ----------MNNPP-KFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 381 ----------~~~~~-sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~ 449 (710)
|..+| +.+-..++|-.. ....+.+..+.++|+||||+-.....+.+.|.+-||+|++.-+.
T Consensus 245 ~~~~~~~~rPFr~PHHsaS~~aLvGGG~--------~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsR 316 (490)
T COG0606 245 EGCPLKIHRPFRAPHHSASLAALVGGGG--------VPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISR 316 (490)
T ss_pred ccCccceeCCccCCCccchHHHHhCCCC--------CCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEE
Confidence 11111 111222222110 11234555667899999999999999999999999999977543
Q ss_pred --CeEeecCceEEEEccCCC
Q 005186 450 --GREVSVSNAIFVTASSFV 467 (710)
Q Consensus 450 --Gr~vd~~n~I~IlTSN~g 467 (710)
.+.....+.++|+++|..
T Consensus 317 a~~~v~ypa~Fqlv~AmNpc 336 (490)
T COG0606 317 AGSKVTYPARFQLVAAMNPC 336 (490)
T ss_pred cCCeeEEeeeeEEhhhcCCC
Confidence 333444577888889863
No 156
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=2e-08 Score=108.51 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=85.0
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
.+.|+||++++..+..++...+ -...+||+||.|+||+.+|.++|+.+++.+..-.+..|.... ..
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~r------------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~--~~ 68 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNR------------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEE--GN 68 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhccccc--CC
Confidence 4579999999999988886543 235999999999999999999999998654110011111000 11
Q ss_pred CCCCc-cccccc--cccc-----cccc----------cchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhH
Q 005186 383 NPPKF-YHQVVG--GDSV-----QFRG----------KTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAI 440 (710)
Q Consensus 383 ~~~sl-~~~~~~--G~~~-----~f~G----------~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~L 440 (710)
.++-. +.|.+. |... ...| -.....+.+.+... .+.|++||++|+|+...+|+||+.|
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~L 148 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTL 148 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHH
Confidence 11100 111110 1100 0011 11123445555543 4679999999999999999999999
Q ss_pred hCCcccCCCCeEeecCceEEEEccC
Q 005186 441 QTGKLPDSYGREVSVSNAIFVTASS 465 (710)
Q Consensus 441 E~G~l~d~~Gr~vd~~n~I~IlTSN 465 (710)
|+-- +++||++|+
T Consensus 149 EEPp------------~~~fILi~~ 161 (314)
T PRK07399 149 EEPG------------NGTLILIAP 161 (314)
T ss_pred hCCC------------CCeEEEEEC
Confidence 9731 356777776
No 157
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.81 E-value=1.1e-07 Score=103.42 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=48.3
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.+.++||.+|-++..-.+...+.+--. --.+||.||||+|||.||-+||+.| |.+.||+.+..++
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~a--------Gr~iLiaGppGtGKTAlA~~ia~eL-G~~~PF~~isgSE 87 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIA--------GRAILIAGPPGTGKTALAMAIAKEL-GEDVPFVSISGSE 87 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--T--------T-EEEEEE-TTSSHHHHHHHHHHHC-TTTS-EEEEEGGG
T ss_pred cccccChHHHHHHHHHHHHHHhccccc--------CcEEEEeCCCCCCchHHHHHHHHHh-CCCCCeeEcccce
Confidence 347999999988776666666553211 1289999999999999999999988 7889999997774
No 158
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.6e-08 Score=116.67 Aligned_cols=129 Identities=21% Similarity=0.209 Sum_probs=88.6
Q ss_pred CcccccHHHHHHHHHHHHHH-------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQR-------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~-------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
+.|.|-++++.+|..+|... -.|+ |+...+||+||||||||.||||+|-.. .-+|+.+-.-+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssgl--------rkRSGILLYGPPGTGKTLlAKAVATEc---sL~FlSVKGPE 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGL--------RKRSGILLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPE 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccc--------cccceeEEECCCCCchHHHHHHHHhhc---eeeEEeecCHH
Confidence 45889999999999999752 1233 344589999999999999999999877 56677665543
Q ss_pred CCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH-------------HHHHHHHhhHhCC
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV-------------HVQNSLSKAIQTG 443 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~-------------~vqn~LLq~LE~G 443 (710)
. . ..|+|..+. -+..+++..+.+..+||||||+|-+.| .|...||--|| |
T Consensus 741 L----L-------NMYVGqSE~-----NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD-g 803 (953)
T KOG0736|consen 741 L----L-------NMYVGQSEE-----NVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD-G 803 (953)
T ss_pred H----H-------HHHhcchHH-----HHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh-c
Confidence 1 1 235665543 234556666666779999999998766 34444555454 2
Q ss_pred cccCCCCeEeecCceEEEEccCC
Q 005186 444 KLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 444 ~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
- .++ +...++||-+||.
T Consensus 804 l-s~~-----~s~~VFViGATNR 820 (953)
T KOG0736|consen 804 L-SDS-----SSQDVFVIGATNR 820 (953)
T ss_pred c-cCC-----CCCceEEEecCCC
Confidence 2 221 3356888889996
No 159
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.79 E-value=4e-08 Score=90.45 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=81.6
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCC
Q 005186 307 DWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPK 386 (710)
Q Consensus 307 iGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~s 386 (710)
+|++.++..+...+... ...+++++||+|+|||++++.+++.+.....+++.+++..... ...
T Consensus 1 ~~~~~~~~~i~~~~~~~-------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~----~~~ 63 (151)
T cd00009 1 VGQEEAIEALREALELP-------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE----GLV 63 (151)
T ss_pred CchHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh----hhH
Confidence 36666666666555321 1238999999999999999999998866667788888874211 000
Q ss_pred ccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 387 FYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 387 l~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
+. ...+.................+|+|||++.+.+..+..+++.++...... ....++.+|+++|.
T Consensus 64 -----~~----~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~ 129 (151)
T cd00009 64 -----VA----ELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNR 129 (151)
T ss_pred -----HH----HHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCc
Confidence 00 00000000011122223456899999999999889999999998754211 12246778888885
No 160
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.79 E-value=6.3e-08 Score=105.69 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=96.7
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC----CCcceEEecC----CC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG----GKENFICADL----CP 376 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g----s~~~fI~iD~----s~ 376 (710)
.|+|+++++..++..++.+..|...+ .-.++|+||+|+|||++|++|++.+-. .+.++..+.+ +.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~-------r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp 124 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEER-------KQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESP 124 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCC-------CcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCC
Confidence 79999999999999998887664432 237999999999999999999998832 1236666655 21
Q ss_pred CCC----------------CCCCC-----CCcc-------ccccccccccc--------------ccc-------c-hhh
Q 005186 377 QDG----------------EMNNP-----PKFY-------HQVVGGDSVQF--------------RGK-------T-LAD 406 (710)
Q Consensus 377 ~~~----------------e~~~~-----~sl~-------~~~~~G~~~~f--------------~G~-------t-~~~ 406 (710)
... +|.-. ..+. ...|.|.-..+ .|. + -..
T Consensus 125 ~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~ 204 (361)
T smart00763 125 MHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDIS 204 (361)
T ss_pred CccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHH
Confidence 100 01000 0000 00111110000 000 0 000
Q ss_pred HHH----------------------HHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCC-CCeEeecCceEEEEc
Q 005186 407 YVA----------------------WELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS-YGREVSVSNAIFVTA 463 (710)
Q Consensus 407 ~L~----------------------~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~-~Gr~vd~~n~I~IlT 463 (710)
.|+ +.+.+...+|+-|+||.|++.++++.||.++++|.+... .+..+.+. .+||+|
T Consensus 205 ~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d-~liia~ 283 (361)
T smart00763 205 ELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPID-GLIIAH 283 (361)
T ss_pred HHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccc-eEEEEe
Confidence 111 233344457999999999999999999999999999753 33355554 489999
Q ss_pred cCC
Q 005186 464 SSF 466 (710)
Q Consensus 464 SN~ 466 (710)
||-
T Consensus 284 sNe 286 (361)
T smart00763 284 SNE 286 (361)
T ss_pred CCH
Confidence 994
No 161
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.79 E-value=5.6e-08 Score=113.37 Aligned_cols=116 Identities=20% Similarity=0.112 Sum_probs=76.3
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccccccccc---ccccchhhHHHHHHHh
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQ---FRGKTLADYVAWELLK 414 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~---f~G~t~~~~L~~al~~ 414 (710)
.+.+||.|++|+|||++|++||..+-+ ..+|+++.+... +..++|...- +..... ..-.+.+.+
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~t-----------~d~L~G~idl~~~~~~g~~-~~~~G~L~~ 82 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGVT-----------EDRLIGGIDVEESLAGGQR-VTQPGLLDE 82 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCcccc-----------hhhcccchhhhhhhhcCcc-cCCCCCeee
Confidence 569999999999999999999997733 347888876421 1223333110 000000 000123344
Q ss_pred CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCC-CCeEeec-CceEEEEccCC
Q 005186 415 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS-YGREVSV-SNAIFVTASSF 466 (710)
Q Consensus 415 ~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~-~Gr~vd~-~n~I~IlTSN~ 466 (710)
...+|||||||+++++.+|+.|+++|++|.++-. .|..... .++.+|+|+|.
T Consensus 83 A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np 136 (589)
T TIGR02031 83 APRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDP 136 (589)
T ss_pred CCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCC
Confidence 5668999999999999999999999999985432 2322222 25678888884
No 162
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.78 E-value=6.1e-08 Score=117.50 Aligned_cols=121 Identities=22% Similarity=0.288 Sum_probs=80.5
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC-------CcceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs-------~~~fI~iD~s~ 376 (710)
+.|+||++-++.+...+.+. ....++|+||+|||||.+|++||..+... +.+++.+|++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~-------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR-------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC-------------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 56999998877777766432 22378899999999999999999987432 35667777764
Q ss_pred CCCCCCCCCCccccccccccccccccc--hhhHHHHHHHh-CCCeEEEEeccccCC--------HHHHHHHHhhHhCCcc
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKT--LADYVAWELLK-KPLSVVYLENVDKAD--------VHVQNSLSKAIQTGKL 445 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t--~~~~L~~al~~-~p~sVI~LDEIDKa~--------~~vqn~LLq~LE~G~l 445 (710)
.- .| ..|+|.. ....+...+.+ ....|||||||+.+. .++++.|+.+|+.|.+
T Consensus 245 l~--------------ag--~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l 308 (857)
T PRK10865 245 LV--------------AG--AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGEL 308 (857)
T ss_pred hh--------------hc--cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCC
Confidence 10 01 1233321 11222333322 345799999999774 3578899888877653
Q ss_pred cCCCCeEeecCceEEEEccCC
Q 005186 446 PDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 446 ~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
++|.+|+.
T Consensus 309 -------------~~IgaTt~ 316 (857)
T PRK10865 309 -------------HCVGATTL 316 (857)
T ss_pred -------------eEEEcCCC
Confidence 48888885
No 163
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=5.1e-08 Score=100.15 Aligned_cols=130 Identities=22% Similarity=0.221 Sum_probs=90.3
Q ss_pred CcccccHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~--------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+-|.|-+..|+.|.+.|... ..|+..|. .+||+||+|+|||.||+++|..- +..||++..+
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPK--------GvlLygppgtGktLlaraVahht---~c~firvsgs 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK--------GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGS 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCc--------ceEEecCCCCchhHHHHHHHhhc---ceEEEEechH
Confidence 34777888888888887642 23544442 68999999999999999999876 7889998877
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----------CHHHHHHHHhhHhCCc
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGK 444 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-----------~~~vqn~LLq~LE~G~ 444 (710)
+. . +.|+|. |......|+-..++...+|||.||||.+ +.+||..+|.+|..=
T Consensus 216 el----v-------qk~ige-----gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql- 278 (404)
T KOG0728|consen 216 EL----V-------QKYIGE-----GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL- 278 (404)
T ss_pred HH----H-------HHHhhh-----hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc-
Confidence 51 1 233332 2334455555566666799999999975 568999999888521
Q ss_pred ccCCCCeEeecCceEEEEccCC
Q 005186 445 LPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 445 l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
+|-+ ..+|.-+||+||.
T Consensus 279 ----dgfe-atknikvimatnr 295 (404)
T KOG0728|consen 279 ----DGFE-ATKNIKVIMATNR 295 (404)
T ss_pred ----cccc-cccceEEEEeccc
Confidence 1111 1246668998884
No 164
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=3.4e-08 Score=106.46 Aligned_cols=124 Identities=21% Similarity=0.198 Sum_probs=79.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|+||+.+++.+...+... +-...+||+||.|+||+++|+++|+.+++....-...|+-
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~-------- 63 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDII-------- 63 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeE--------
Confidence 46899999999988887432 2345899999999999999999999986432110000110
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceE
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAI 459 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I 459 (710)
.+.+ +.|.. .+...+..+.+.+... .+.|++||++|+++...+|+|++.||+-. .+++
T Consensus 64 --~~~~--~~~~~---i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp-----------~~t~ 125 (313)
T PRK05564 64 --EFKP--INKKS---IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP-----------KGVF 125 (313)
T ss_pred --Eecc--ccCCC---CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCC-----------CCeE
Confidence 0000 00100 1111112223333233 45799999999999999999999999631 3567
Q ss_pred EEEccC
Q 005186 460 FVTASS 465 (710)
Q Consensus 460 ~IlTSN 465 (710)
||++|+
T Consensus 126 ~il~~~ 131 (313)
T PRK05564 126 IILLCE 131 (313)
T ss_pred EEEEeC
Confidence 777775
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.75 E-value=1.2e-07 Score=113.03 Aligned_cols=128 Identities=18% Similarity=0.244 Sum_probs=80.6
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.++|.+..++.+.+.+.+. ...+++|+||+|||||.+|++||..+.....|+...++..+.- .
T Consensus 186 ~~liGR~~ei~~~i~iL~r~-------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l---~ 249 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL---D 249 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec---c
Confidence 56999999998888877642 1236789999999999999999987654444444344442110 0
Q ss_pred CCCccccccccccccccccc--hhhHHHHHHHhCCCeEEEEeccccC---------CHHHHHHHHhhHhCCcccCCCCeE
Q 005186 384 PPKFYHQVVGGDSVQFRGKT--LADYVAWELLKKPLSVVYLENVDKA---------DVHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t--~~~~L~~al~~~p~sVI~LDEIDKa---------~~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
...+ +.| ..|+|.. ....+.+.+.+....|||||||+.+ ..++.+.|..++..|+
T Consensus 250 ~~~l----laG--~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~-------- 315 (758)
T PRK11034 250 IGSL----LAG--TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGK-------- 315 (758)
T ss_pred HHHH----hcc--cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCC--------
Confidence 0011 111 1233321 1123445555666789999999965 3467777888887654
Q ss_pred eecCceEEEEccCC
Q 005186 453 VSVSNAIFVTASSF 466 (710)
Q Consensus 453 vd~~n~I~IlTSN~ 466 (710)
..+|.+||.
T Consensus 316 -----i~vIgATt~ 324 (758)
T PRK11034 316 -----IRVIGSTTY 324 (758)
T ss_pred -----eEEEecCCh
Confidence 448888874
No 166
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.75 E-value=1.3e-07 Score=114.76 Aligned_cols=121 Identities=20% Similarity=0.268 Sum_probs=77.0
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC-------CcceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs-------~~~fI~iD~s~ 376 (710)
+.|+||++.++.+...+.+. ....++|+||+|||||.+|++||..+... +.+++.+|++.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~-------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR-------------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC-------------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH
Confidence 45999999888777766431 22378899999999999999999987432 34566666663
Q ss_pred CCCCCCCCCCccccccccccccccccc--hhhHHHHHHHh-CCCeEEEEeccccCC--------HHHHHHHHhhHhCCcc
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKT--LADYVAWELLK-KPLSVVYLENVDKAD--------VHVQNSLSKAIQTGKL 445 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t--~~~~L~~al~~-~p~sVI~LDEIDKa~--------~~vqn~LLq~LE~G~l 445 (710)
.- ....|+|.. .+..+...+.+ ....|||||||+.+. .++++.|..++..|.
T Consensus 240 l~----------------a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~- 302 (852)
T TIGR03346 240 LI----------------AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGE- 302 (852)
T ss_pred Hh----------------hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCc-
Confidence 10 001122211 11223333333 346899999999764 356777777776554
Q ss_pred cCCCCeEeecCceEEEEccCC
Q 005186 446 PDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 446 ~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
..+|.+||.
T Consensus 303 ------------i~~IgaTt~ 311 (852)
T TIGR03346 303 ------------LHCIGATTL 311 (852)
T ss_pred ------------eEEEEeCcH
Confidence 337777773
No 167
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.75 E-value=2.7e-07 Score=94.80 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=41.5
Q ss_pred chhHHhcCcc--eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 005186 590 WLQDFFNQRV--KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLV 666 (710)
Q Consensus 590 f~~efl~RiD--~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~ 666 (710)
+.+++..|+. .++...|+|.++..+++.+....+ + +.++++++++|+.. + ....|.|+..|.++..
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~-------~--~~l~~~v~~~l~~~-~-~~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKER-------G--IELPEEVIEYLARR-F-RRDVRELEGALNRLDA 214 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHT-------T----S-HHHHHHHHHH-T-TSSHHHHHHHHHHHHH
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHh-------C--CCCcHHHHHHHHHh-h-cCCHHHHHHHHHHHHH
Confidence 3445555553 367788999998888888776431 2 66999999999997 2 3356889999888754
No 168
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.75 E-value=1.9e-07 Score=113.03 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=75.6
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC-------CcceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs-------~~~fI~iD~s~ 376 (710)
+.|+|+++.++.+.+.+.+. ...+++|+||||||||.+|+.||..+... +..++.+|++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~-------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~ 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR-------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc-------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH
Confidence 56999999999988887532 12368999999999999999999987432 34677777763
Q ss_pred CCCCCCCCCCccccccccccccccccc--hhhHHHHHHHhCCCeEEEEeccccCC--------HHHHHHHHhhHhCCcc
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKT--LADYVAWELLKKPLSVVYLENVDKAD--------VHVQNSLSKAIQTGKL 445 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t--~~~~L~~al~~~p~sVI~LDEIDKa~--------~~vqn~LLq~LE~G~l 445 (710)
. . . ...|+|.. .+..+.+.+......|||||||+.+. .++.+.|..+|..|.+
T Consensus 246 l----~----------a--g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l 308 (821)
T CHL00095 246 L----L----------A--GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGEL 308 (821)
T ss_pred H----h----------c--cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCc
Confidence 1 0 0 11233321 12233444455566899999998542 2567888888876653
No 169
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.74 E-value=4e-08 Score=112.85 Aligned_cols=159 Identities=13% Similarity=0.099 Sum_probs=97.5
Q ss_pred hHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 294 NWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 294 ~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
.+..|.+.+...|+|++.++.+|.-++..... .....+...|.+.++||.|++|+|||.+|+++|+.+.+ ..|+...
T Consensus 193 ~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r--~~~~~~~ 269 (509)
T smart00350 193 IYERLSRSLAPSIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR--AVYTTGK 269 (509)
T ss_pred HHHHHHHhhCccccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc--ceEcCCC
Confidence 45677888899999999987766555432110 00011122345679999999999999999999997632 2333211
Q ss_pred CCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCC-CCeE
Q 005186 374 LCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS-YGRE 452 (710)
Q Consensus 374 ~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~-~Gr~ 452 (710)
.....+ +.. ... .+. +.|... .-.+++..+..++++||||+++++..|..|+++||++.++-. .|..
T Consensus 270 ~~~~~~-l~~--~~~------~~~-~~g~~~--~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~ 337 (509)
T smart00350 270 GSSAVG-LTA--AVT------RDP-ETREFT--LEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGIT 337 (509)
T ss_pred CCCcCC-ccc--cce------Ecc-CcceEE--ecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEE
Confidence 011000 000 000 000 011100 011334455678999999999999999999999999987532 3544
Q ss_pred eecC-ceEEEEccCCC
Q 005186 453 VSVS-NAIFVTASSFV 467 (710)
Q Consensus 453 vd~~-n~I~IlTSN~g 467 (710)
..+. ++.||+|+|-.
T Consensus 338 ~~l~~~~~viAa~NP~ 353 (509)
T smart00350 338 TTLNARCSVLAAANPI 353 (509)
T ss_pred EEecCCcEEEEEeCCC
Confidence 4443 57899999963
No 170
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.8e-08 Score=116.19 Aligned_cols=136 Identities=16% Similarity=0.142 Sum_probs=90.0
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
.+.|-|.++|+..|.+.+.-.+....+.+ -..|.+.-+||+||||||||.||+|+|-.- +.||+.+..++ |.
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~-lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSE----Fv 381 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQE-LGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSE----FV 381 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHH-cCCcCcCceEEECCCCCcHHHHHHHHhccc---CCceeeechHH----HH
Confidence 56799999999999888864432111000 011344579999999999999999999876 88999988886 33
Q ss_pred CCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH---------------HHHHHHHhhHhCCcccC
Q 005186 383 NPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV---------------HVQNSLSKAIQTGKLPD 447 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~---------------~vqn~LLq~LE~G~l~d 447 (710)
+ .++|. |...+..|+...+.+..+|||+||||.... ...|.||--|| |..+
T Consensus 382 E-------~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD-gf~~- 447 (774)
T KOG0731|consen 382 E-------MFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD-GFET- 447 (774)
T ss_pred H-------Hhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc-CCcC-
Confidence 2 12221 222334566666666779999999996532 33455554444 2211
Q ss_pred CCCeEeecCceEEEEccCCC
Q 005186 448 SYGREVSVSNAIFVTASSFV 467 (710)
Q Consensus 448 ~~Gr~vd~~n~I~IlTSN~g 467 (710)
. .++||+.+||..
T Consensus 448 ------~-~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 448 ------S-KGVIVLAATNRP 460 (774)
T ss_pred ------C-CcEEEEeccCCc
Confidence 1 578999999963
No 171
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.71 E-value=1.6e-07 Score=117.37 Aligned_cols=122 Identities=10% Similarity=-0.019 Sum_probs=73.6
Q ss_pred CCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC--CCcc---------cccccccc--------
Q 005186 336 RRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP--PKFY---------HQVVGGDS-------- 396 (710)
Q Consensus 336 r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~--~sl~---------~~~~~G~~-------- 396 (710)
+++-.+||+||+|||||+||+|||... ..||+.+.++..-..+... .+.+ .......+
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhh
Confidence 455689999999999999999999988 7899999988521001000 0000 00000000
Q ss_pred ----c--cccc--cchhhHHHHHHHhCCCeEEEEeccccCCHH-----HHHHHHhhHhCCcccCCCCeEeecCceEEEEc
Q 005186 397 ----V--QFRG--KTLADYVAWELLKKPLSVVYLENVDKADVH-----VQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 463 (710)
Q Consensus 397 ----~--~f~G--~t~~~~L~~al~~~p~sVI~LDEIDKa~~~-----vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlT 463 (710)
. .+.+ ...+..+.+..++...+||+|||||.+... ..+.|+..|+...-. .+-+++|||+|
T Consensus 1705 ~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~------~s~~~VIVIAA 1778 (2281)
T CHL00206 1705 MNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER------CSTRNILVIAS 1778 (2281)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc------CCCCCEEEEEe
Confidence 0 0111 111233455556666799999999998753 356777777632111 12357899999
Q ss_pred cCC
Q 005186 464 SSF 466 (710)
Q Consensus 464 SN~ 466 (710)
||.
T Consensus 1779 TNR 1781 (2281)
T CHL00206 1779 THI 1781 (2281)
T ss_pred CCC
Confidence 996
No 172
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.71 E-value=1.3e-07 Score=105.47 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=45.9
Q ss_pred HHhcCcc--eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 005186 593 DFFNQRV--KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLV 666 (710)
Q Consensus 593 efl~RiD--~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~ 666 (710)
.+..|+. .+|.|.|+|.+...+++.+.+.. ..+.++++++++|+.. +.. ..|.|+..|.++..
T Consensus 252 ~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~---------~~~~l~~e~l~~ia~~-~~~-~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 252 RLRSRFEWGLVVDIEPPDLETRLAILQKKAEE---------EGLELPDEVLEFIAKN-IRS-NVRELEGALNRLLA 316 (405)
T ss_pred hhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHh-cCC-CHHHHHHHHHHHHH
Confidence 3455554 47999999999998888876644 1267899999999985 332 34778887777754
No 173
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.71 E-value=4.9e-07 Score=102.17 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=46.4
Q ss_pred HHhcCcc--eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 005186 593 DFFNQRV--KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVL 665 (710)
Q Consensus 593 efl~RiD--~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl 665 (710)
.+..|+. .++.+.|+|.+++..++.+..... + +.++++++++|+.. + ....|.|+..|+.+.
T Consensus 255 rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~-------~--~~l~~evl~~la~~-~-~~dir~L~g~l~~l~ 318 (445)
T PRK12422 255 RLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL-------S--IRIEETALDFLIEA-L-SSNVKSLLHALTLLA 318 (445)
T ss_pred HHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHh-c-CCCHHHHHHHHHHHH
Confidence 4455553 588899999999988887765431 2 77899999999985 2 335678888888885
No 174
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.70 E-value=1.4e-07 Score=107.59 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=86.3
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCC---C--
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQD---G-- 379 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~---~-- 379 (710)
.++||..+++.+.-++. +...++|.||+|+|||++++.|+..+..... -+.++++..- +
T Consensus 192 ~v~Gq~~~~~al~laa~---------------~G~~llliG~~GsGKTtLak~L~gllpp~~g-~e~le~~~i~s~~g~~ 255 (506)
T PRK09862 192 DVIGQEQGKRGLEITAA---------------GGHNLLLIGPPGTGKTMLASRINGLLPDLSN-EEALESAAILSLVNAE 255 (506)
T ss_pred EEECcHHHHhhhheecc---------------CCcEEEEECCCCCcHHHHHHHHhccCCCCCC-cEEEecchhhhhhccc
Confidence 58899887766543321 2248999999999999999999987742211 1223333100 0
Q ss_pred ---------CCCCCCC-ccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCC-
Q 005186 380 ---------EMNNPPK-FYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS- 448 (710)
Q Consensus 380 ---------e~~~~~s-l~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~- 448 (710)
-|..+|. .+...++|- +. ..-.+.+.....+|+|||||+.+++.+|..|++.||+|.++..
T Consensus 256 ~~~~~~~~rPfr~ph~~~s~~~l~GG------g~--~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r 327 (506)
T PRK09862 256 SVQKQWRQRPFRSPHHSASLTAMVGG------GA--IPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSR 327 (506)
T ss_pred cccCCcCCCCccCCCccchHHHHhCC------Cc--eehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEec
Confidence 0111111 111112221 11 0123567777889999999999999999999999999998532
Q ss_pred CCeEe-ecCceEEEEccCC
Q 005186 449 YGREV-SVSNAIFVTASSF 466 (710)
Q Consensus 449 ~Gr~v-d~~n~I~IlTSN~ 466 (710)
.|..+ .-.+..+|+|+|.
T Consensus 328 ~g~~~~~pa~f~lIAa~NP 346 (506)
T PRK09862 328 TRAKITYPARFQLVAAMNP 346 (506)
T ss_pred CCcceeccCCEEEEEeecC
Confidence 23222 2246789999995
No 175
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.69 E-value=3.9e-08 Score=100.24 Aligned_cols=128 Identities=16% Similarity=0.189 Sum_probs=88.3
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC--Ccc
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG--KEN 368 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs--~~~ 368 (710)
+.++...|. .|+|.+++++.+....... ...+++|.||||+|||+-+.+||+.|.|. .+.
T Consensus 19 eKYrP~~l~-----dIVGNe~tv~rl~via~~g-------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~ 80 (333)
T KOG0991|consen 19 EKYRPSVLQ-----DIVGNEDTVERLSVIAKEG-------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEA 80 (333)
T ss_pred HhhCchHHH-----HhhCCHHHHHHHHHHHHcC-------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhH
Confidence 445555444 4999999988876554322 12389999999999999999999999884 344
Q ss_pred eEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHH-------hCCCeEEEEeccccCCHHHHHHHHhhHh
Q 005186 369 FICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL-------KKPLSVVYLENVDKADVHVQNSLSKAIQ 441 (710)
Q Consensus 369 fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~-------~~p~sVI~LDEIDKa~~~vqn~LLq~LE 441 (710)
+..+|.+.. ||-+.+..-...+. ...+.||+|||.|.|....|++|.+.||
T Consensus 81 vLELNASde----------------------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtME 138 (333)
T KOG0991|consen 81 VLELNASDE----------------------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTME 138 (333)
T ss_pred hhhccCccc----------------------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHH
Confidence 666666631 22222211111111 1346799999999999999999999998
Q ss_pred CCcccCCCCeEeecCceEEEEccCCCcc
Q 005186 442 TGKLPDSYGREVSVSNAIFVTASSFVED 469 (710)
Q Consensus 442 ~G~l~d~~Gr~vd~~n~I~IlTSN~g~~ 469 (710)
= .-+.+.|.+++|....
T Consensus 139 i-----------yS~ttRFalaCN~s~K 155 (333)
T KOG0991|consen 139 I-----------YSNTTRFALACNQSEK 155 (333)
T ss_pred H-----------Hcccchhhhhhcchhh
Confidence 2 2245679999996443
No 176
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=5.9e-08 Score=105.56 Aligned_cols=133 Identities=21% Similarity=0.243 Sum_probs=81.2
Q ss_pred Ccccc-cHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc--ceEEecCCCC---
Q 005186 304 EKIDW-QDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE--NFICADLCPQ--- 377 (710)
Q Consensus 304 ~~ViG-QdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~--~fI~iD~s~~--- 377 (710)
+.|+| |+.+++.+...+... +-+..+||+||+|+||+++|+++|+.++..+. ...+-.|...
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~ 72 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHH
Confidence 45677 998998888877532 23458999999999999999999999975421 1111111110
Q ss_pred -CCCCCCCCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeE
Q 005186 378 -DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 378 -~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
.+.+.+.+-+.+. |.. .+..-...+.+.+.. ..+.|++|||+|+++...+|+|++.||+--
T Consensus 73 ~~~~hpD~~~i~~~---~~~---i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp-------- 138 (329)
T PRK08058 73 DSGNHPDVHLVAPD---GQS---IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS-------- 138 (329)
T ss_pred hcCCCCCEEEeccc---ccc---CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC--------
Confidence 0001100000000 100 111111223333332 346799999999999999999999999732
Q ss_pred eecCceEEEEccC
Q 005186 453 VSVSNAIFVTASS 465 (710)
Q Consensus 453 vd~~n~I~IlTSN 465 (710)
.+++||++|+
T Consensus 139 ---~~~~~Il~t~ 148 (329)
T PRK08058 139 ---GGTTAILLTE 148 (329)
T ss_pred ---CCceEEEEeC
Confidence 3677888776
No 177
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.67 E-value=3.7e-07 Score=103.34 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=47.2
Q ss_pred HHhcCcc--eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 005186 593 DFFNQRV--KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVR 667 (710)
Q Consensus 593 efl~RiD--~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~~ 667 (710)
.+..|+. .++.+.|+|.+.+.+++.+.+... .+.++++++++|+... ....|.|+..|.++...
T Consensus 264 ~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~---------~~~l~~e~l~~ia~~~--~~~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 264 RLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE---------GIDLPDEVLEFIAKNI--TSNVRELEGALNRLIAY 329 (450)
T ss_pred HHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHcCc--CCCHHHHHHHHHHHHHH
Confidence 4555663 478999999999999988776541 2678999999999862 33457788887777543
No 178
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.65 E-value=8.1e-07 Score=100.65 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=45.5
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 005186 600 KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRG 668 (710)
Q Consensus 600 ~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~~~ 668 (710)
-++.+.|+|.+++.+++.+.+... ++.+.++++++++|+.. ...-.|.++..+.+++.-+
T Consensus 268 l~~~L~~pd~e~r~~iL~~~~~~~-------gl~~~l~~evl~~Ia~~--~~gd~R~L~gaL~~l~~~a 327 (450)
T PRK14087 268 LSIAIQKLDNKTATAIIKKEIKNQ-------NIKQEVTEEAINFISNY--YSDDVRKIKGSVSRLNFWS 327 (450)
T ss_pred ceeccCCcCHHHHHHHHHHHHHhc-------CCCCCCCHHHHHHHHHc--cCCCHHHHHHHHHHHHHHH
Confidence 477899999999999998887542 33347999999999985 2335688888888876433
No 179
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.65 E-value=1.1e-07 Score=99.63 Aligned_cols=129 Identities=17% Similarity=0.182 Sum_probs=93.9
Q ss_pred HhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHc---CCCcceEEecCCCC
Q 005186 301 ALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY---GGKENFICADLCPQ 377 (710)
Q Consensus 301 ~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~---gs~~~fI~iD~s~~ 377 (710)
.|+..|--...+.+...+.|.+... |...++||.||+|.||+.||+.|-+.-. .-..+|+.+||...
T Consensus 181 ~lksgiatrnp~fnrmieqierva~----------rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatl 250 (531)
T COG4650 181 FLKSGIATRNPHFNRMIEQIERVAI----------RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATL 250 (531)
T ss_pred HHHhcccccChHHHHHHHHHHHHHh----------hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeee
Confidence 4566677777777777777766543 2335899999999999999998765321 22578999999964
Q ss_pred CCCCCCCCCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccC
Q 005186 378 DGEMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 447 (710)
Q Consensus 378 ~~e~~~~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d 447 (710)
.++ .. ...++|+..| |.|.. ..-.+.++....+.+|||||..+..+-|..|++++|+.+|..
T Consensus 251 rgd----~a--msalfghvkgaftga~--~~r~gllrsadggmlfldeigelgadeqamllkaieekrf~p 313 (531)
T COG4650 251 RGD----TA--MSALFGHVKGAFTGAR--ESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYP 313 (531)
T ss_pred cCc----hH--HHHHHhhhccccccch--hhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCC
Confidence 331 11 1246777665 55543 223566777889999999999999999999999999988765
No 180
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.61 E-value=9.4e-07 Score=99.87 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=42.3
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 005186 600 KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLV 666 (710)
Q Consensus 600 ~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~ 666 (710)
.++.+.|+|.+...+++.+..... .+.++++++++|+.. .....|.|+..|.++..
T Consensus 256 l~v~i~~pd~e~r~~IL~~~~~~~---------~~~l~~ev~~~Ia~~--~~~~~R~L~g~l~~l~~ 311 (440)
T PRK14088 256 LVAKLEPPDEETRKKIARKMLEIE---------HGELPEEVLNFVAEN--VDDNLRRLRGAIIKLLV 311 (440)
T ss_pred ceEeeCCCCHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHhc--cccCHHHHHHHHHHHHH
Confidence 477899999999998887665321 266899999999995 23356888888888754
No 181
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=98.60 E-value=1.3e-07 Score=81.98 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=62.9
Q ss_pred CCHHHHHHHH---HHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcCcCCCC
Q 005186 607 FNFDALAEKI---LKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANS 682 (710)
Q Consensus 607 LD~d~Laeii---l~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~~~~~~ 682 (710)
|+.+++.+|+ ++++.+++.+ .++.|+++++++++|++.+|.+. |||+|+++|++.+.++|++.+..+....+.
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~---~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~ 77 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKE---KGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAILSGKIKEGD 77 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHH---TTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCSCTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH---CCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcC
Confidence 4566666666 4555555544 59999999999999999999888 999999999999999999999999999888
Q ss_pred EEEE
Q 005186 683 IVKL 686 (710)
Q Consensus 683 ~v~L 686 (710)
.|++
T Consensus 78 ~v~v 81 (81)
T PF10431_consen 78 TVRV 81 (81)
T ss_dssp EEEE
T ss_pred EeeC
Confidence 8864
No 182
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=5.4e-07 Score=99.38 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=90.3
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCC-cc-eEEecCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK-EN-FICADLCPQDGE 380 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~-~~-fI~iD~s~~~~e 380 (710)
-+++.+.++-++.+...+.....|.. +.+++++||+|||||.+++.+.+.+.... .. ++++||-.+..
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~---------p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t- 85 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGER---------PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT- 85 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCC---------CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCC-
Confidence 44588899999999988877665422 23599999999999999999999986432 22 78999997432
Q ss_pred CCCCCCcccccc--cccccccccc---chhhHHHHHHHh-CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 381 MNNPPKFYHQVV--GGDSVQFRGK---TLADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 381 ~~~~~sl~~~~~--~G~~~~f~G~---t~~~~L~~al~~-~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
...++..-+ +| ..-..|. .....+.+.+.+ ...-||+|||||.+-..-+..|+.++.-..-.
T Consensus 86 ---~~~i~~~i~~~~~-~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~-------- 153 (366)
T COG1474 86 ---PYQVLSKILNKLG-KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN-------- 153 (366)
T ss_pred ---HHHHHHHHHHHcC-CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--------
Confidence 222221100 11 1111222 233456666665 45568999999998766556666666533211
Q ss_pred cCceEEEEccCC
Q 005186 455 VSNAIFVTASSF 466 (710)
Q Consensus 455 ~~n~I~IlTSN~ 466 (710)
-.++++|+.+|-
T Consensus 154 ~~~v~vi~i~n~ 165 (366)
T COG1474 154 KVKVSIIAVSND 165 (366)
T ss_pred ceeEEEEEEecc
Confidence 235668887773
No 183
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=5e-08 Score=102.12 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=91.7
Q ss_pred CcccccHHHHHHHHHHHHHHh--------cCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQRR--------TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r--------~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..|.|-+..|..|.+++.... .|+ +|+-.++|+|+||+|||.||+|+|+.- ..-|+++-.+
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGi--------kpPKGVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGs 253 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGI--------KPPKGVILYGEPGTGKTLLAKAVANQT---SATFLRVVGS 253 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCC--------CCCCeeEEeCCCCCchhHHHHHHhccc---chhhhhhhhH
Confidence 348888888999988886432 233 355578999999999999999999855 4556666555
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HHHHHHHHhhHhCCc
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGK 444 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~vqn~LLq~LE~G~ 444 (710)
+. .+.|.|..+ .++..++....+...+|+||||||.+. .++|..+|.+|..=.
T Consensus 254 eL-----------iQkylGdGp-----klvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQld 317 (440)
T KOG0726|consen 254 EL-----------IQKYLGDGP-----KLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 317 (440)
T ss_pred HH-----------HHHHhccch-----HHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhcc
Confidence 31 134555433 345667777777777999999999763 589999999886322
Q ss_pred ccCCCCeEeecCceEEEEccCC
Q 005186 445 LPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 445 l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
=-|++| ++-|||+||.
T Consensus 318 GFdsrg------DvKvimATnr 333 (440)
T KOG0726|consen 318 GFDSRG------DVKVIMATNR 333 (440)
T ss_pred CccccC------CeEEEEeccc
Confidence 123332 4559999995
No 184
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.59 E-value=2.2e-07 Score=111.29 Aligned_cols=125 Identities=19% Similarity=0.129 Sum_probs=83.5
Q ss_pred ccccHHHHHHHHHHHHHHh--------cCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCC
Q 005186 306 IDWQDEAISVISQTIAQRR--------TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ 377 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r--------~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~ 377 (710)
|+|.++++..|.+.+.... .|. .+...++|+||+|||||++|++||..+ ..+++.+++...
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi--------~~~~giLL~GppGtGKT~laraia~~~---~~~~i~i~~~~i 248 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGI--------EPPKGVLLYGPPGTGKTLLAKAVANEA---GAYFISINGPEI 248 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCC--------CCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEecHHH
Confidence 7899999999888875431 121 233479999999999999999999988 567888887742
Q ss_pred CCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HHHHHHHHhhHhCCccc
Q 005186 378 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKLP 446 (710)
Q Consensus 378 ~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~vqn~LLq~LE~G~l~ 446 (710)
. ..+.|... .....+.+.......+||||||||.+. ..+++.|+..|+.-.
T Consensus 249 ~-----------~~~~g~~~-----~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-- 310 (733)
T TIGR01243 249 M-----------SKYYGESE-----ERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-- 310 (733)
T ss_pred h-----------cccccHHH-----HHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc--
Confidence 1 12222211 112334444444555899999998763 357788888886321
Q ss_pred CCCCeEeecCceEEEEccCC
Q 005186 447 DSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 447 d~~Gr~vd~~n~I~IlTSN~ 466 (710)
. . .+++||.|||.
T Consensus 311 ~-~------~~vivI~atn~ 323 (733)
T TIGR01243 311 G-R------GRVIVIGATNR 323 (733)
T ss_pred c-C------CCEEEEeecCC
Confidence 1 1 24678878885
No 185
>PRK04132 replication factor C small subunit; Provisional
Probab=98.59 E-value=7.1e-07 Score=106.99 Aligned_cols=95 Identities=21% Similarity=0.356 Sum_probs=69.8
Q ss_pred eEEEEec--CCCCchhHHHHHHHHHHcCC--CcceEEecCCCCCCCCCCCCCccccccccccccccccchhhH-HHHHHH
Q 005186 339 IWFNFTG--PDLCGKRKIAIALAEIIYGG--KENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADY-VAWELL 413 (710)
Q Consensus 339 ~~lLf~G--P~GvGKT~LAraLAe~L~gs--~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~-L~~al~ 413 (710)
..-+..| |.+.|||++|++||+.+||. ..+++.+|++.. +|...+.. +.+...
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~----------------------rgid~IR~iIk~~a~ 622 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDE----------------------RGINVIREKVKEFAR 622 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCc----------------------ccHHHHHHHHHHHHh
Confidence 3456678 99999999999999999885 457899998852 11111122 222222
Q ss_pred hC-----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 414 KK-----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 414 ~~-----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.. ++.||||||+|+++...|++|++.||+-. .+++||++||-
T Consensus 623 ~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~-----------~~~~FILi~N~ 669 (846)
T PRK04132 623 TKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-----------SNVRFILSCNY 669 (846)
T ss_pred cCCcCCCCCEEEEEECcccCCHHHHHHHHHHhhCCC-----------CCeEEEEEeCC
Confidence 22 35799999999999999999999999632 36779999984
No 186
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=2e-07 Score=100.98 Aligned_cols=139 Identities=19% Similarity=0.183 Sum_probs=84.8
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCC----CC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ----DG 379 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~----~~ 379 (710)
.-+.||..+.+.+..++...+ -++.+||+||.|+||+.+|.++|+.++..... ..-.|... .+
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~r------------l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~-~~~~c~~c~~~~~g 70 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGR------------LGHGLLICGPEGLGKRAVALALAEHVLASGPD-PAAAQRTRQLIAAG 70 (319)
T ss_pred cccccHHHHHHHHHHHHHcCC------------cceeEeeECCCCCCHHHHHHHHHHHHhCCCCC-CCCcchHHHHHhcC
Confidence 457899999998888876432 34589999999999999999999999764311 00011110 00
Q ss_pred CCCCCCCcc-ccccccccc-cccccchhhHHHHHHHhCC----CeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEe
Q 005186 380 EMNNPPKFY-HQVVGGDSV-QFRGKTLADYVAWELLKKP----LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 380 e~~~~~sl~-~~~~~G~~~-~f~G~t~~~~L~~al~~~p----~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
.+.+.+-+. .++..|... .-.+-..+..+.+.+...| +.|++||++|+|+...+|+||+.||+--
T Consensus 71 ~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp--------- 141 (319)
T PRK08769 71 THPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS--------- 141 (319)
T ss_pred CCCCEEEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC---------
Confidence 011111110 111111100 0011111233444444444 5799999999999999999999999742
Q ss_pred ecCceEEEEccCC
Q 005186 454 SVSNAIFVTASSF 466 (710)
Q Consensus 454 d~~n~I~IlTSN~ 466 (710)
.+++||++|+-
T Consensus 142 --~~~~fiL~~~~ 152 (319)
T PRK08769 142 --PGRYLWLISAQ 152 (319)
T ss_pred --CCCeEEEEECC
Confidence 46778888874
No 187
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.58 E-value=1.2e-06 Score=101.54 Aligned_cols=63 Identities=17% Similarity=0.105 Sum_probs=44.6
Q ss_pred HHhcCc--ceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 005186 593 DFFNQR--VKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLV 666 (710)
Q Consensus 593 efl~Ri--D~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~ 666 (710)
+|..|+ -.++...+.|.+...+++.+.... ..+.+++++++||+.. + ....|.|+..|.++..
T Consensus 430 rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~---------r~l~l~~eVi~yLa~r-~-~rnvR~LegaL~rL~a 494 (617)
T PRK14086 430 RLRNRFEWGLITDVQPPELETRIAILRKKAVQ---------EQLNAPPEVLEFIASR-I-SRNIRELEGALIRVTA 494 (617)
T ss_pred HHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHh-c-cCCHHHHHHHHHHHHH
Confidence 344444 336788889999888888776533 1378899999999996 2 2245788888887753
No 188
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.58 E-value=4.1e-06 Score=87.02 Aligned_cols=120 Identities=12% Similarity=0.023 Sum_probs=85.9
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 385 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~ 385 (710)
++|-+..++.|.+...+...|. +..++||+|+.|||||.+++++........-.+|.++-...
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L-------- 91 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL-------- 91 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh--------
Confidence 7899999999988888877753 44589999999999999999999888665655665533321
Q ss_pred CccccccccccccccccchhhHHHHHHHhCCC-eEEEEecccc-CCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEc
Q 005186 386 KFYHQVVGGDSVQFRGKTLADYVAWELLKKPL-SVVYLENVDK-ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 463 (710)
Q Consensus 386 sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~-sVI~LDEIDK-a~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlT 463 (710)
..+..|.+.++..|+ -|||+|++-- +...-...|..+||.|--.. -.|++|.+|
T Consensus 92 -----------------~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-------P~NvliyAT 147 (249)
T PF05673_consen 92 -----------------GDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-------PDNVLIYAT 147 (249)
T ss_pred -----------------ccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-------CCcEEEEEe
Confidence 012356777776654 5889998763 33455677777777553222 268999999
Q ss_pred cCC
Q 005186 464 SSF 466 (710)
Q Consensus 464 SN~ 466 (710)
||.
T Consensus 148 SNR 150 (249)
T PF05673_consen 148 SNR 150 (249)
T ss_pred cch
Confidence 995
No 189
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.4e-07 Score=96.07 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=91.2
Q ss_pred cccccHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 305 KIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~--------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.|.|-.+.|+.|.+.+... +.|+. |+-.+|++||||+|||.+|+|+|+-- +.-||++=.++
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgid--------ppkgvllygppgtgktl~aravanrt---dacfirvigse 246 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGID--------PPKGVLLYGPPGTGKTLCARAVANRT---DACFIRVIGSE 246 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCC--------CCCceEEeCCCCCchhHHHHHHhccc---CceEEeehhHH
Confidence 3777777777777776532 33443 34479999999999999999999754 67788875553
Q ss_pred CCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----------CHHHHHHHHhhHhCCcc
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGKL 445 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-----------~~~vqn~LLq~LE~G~l 445 (710)
. . +.|+|. |...+..|++..+.+.-+||||||||.. +-+||..+|.++..=.=
T Consensus 247 l----v-------qkyvge-----garmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldg 310 (435)
T KOG0729|consen 247 L----V-------QKYVGE-----GARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG 310 (435)
T ss_pred H----H-------HHHhhh-----hHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccC
Confidence 1 1 234442 3445567888888888899999999975 45899999999863222
Q ss_pred cCCCCeEeecCceEEEEccCC
Q 005186 446 PDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 446 ~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
-|.+| |.-++|+||.
T Consensus 311 fdprg------nikvlmatnr 325 (435)
T KOG0729|consen 311 FDPRG------NIKVLMATNR 325 (435)
T ss_pred CCCCC------CeEEEeecCC
Confidence 24443 5668999995
No 190
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.58 E-value=5.8e-07 Score=106.05 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=80.3
Q ss_pred cccccHHHHHHHHHHHHHHhcC--CCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTG--HEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g--~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
.|.|.+.++..+...+...... ...... +.+..++|+||+|+|||++|+++|..+ ..+|+.++++.+..
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~---~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~--- 223 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGG---KIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVE--- 223 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCC---CCCCcEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHH---
Confidence 4678888877776666543210 000000 122359999999999999999999988 67899988875211
Q ss_pred CCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH--------------HHHHHHHhhHhCCcccCC
Q 005186 383 NPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV--------------HVQNSLSKAIQTGKLPDS 448 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~--------------~vqn~LLq~LE~G~l~d~ 448 (710)
.++|... .....+.........+||||||||.+.. .+.+.||..|+. . ..
T Consensus 224 --------~~~g~~~-----~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg-~-~~- 287 (644)
T PRK10733 224 --------MFVGVGA-----SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG-F-EG- 287 (644)
T ss_pred --------hhhcccH-----HHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc-c-cC-
Confidence 1222211 1123334444555669999999998732 245566655552 1 11
Q ss_pred CCeEeecCceEEEEccCC
Q 005186 449 YGREVSVSNAIFVTASSF 466 (710)
Q Consensus 449 ~Gr~vd~~n~I~IlTSN~ 466 (710)
-.+++||+|||.
T Consensus 288 ------~~~vivIaaTN~ 299 (644)
T PRK10733 288 ------NEGIIVIAATNR 299 (644)
T ss_pred ------CCCeeEEEecCC
Confidence 135789999995
No 191
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.5e-07 Score=102.54 Aligned_cols=134 Identities=13% Similarity=0.054 Sum_probs=84.7
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCC-------
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ------- 377 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~------- 377 (710)
-+.|++.+.+.+...+...+ -.+.+||+||.|+||+.+|.++|+.++.....- .-.|+.+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~r------------l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~-~~~Cg~C~sC~~~~ 69 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGR------------GHHALLIQALPGMGDDALIYALSRWLMCQQPQG-HKSCGHCRGCQLMQ 69 (334)
T ss_pred CCCCChHHHHHHHHHHHcCC------------cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHH
Confidence 46899988888877775432 356999999999999999999999997532110 0022211
Q ss_pred CCCCCCCCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEe
Q 005186 378 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 378 ~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
.+.+.+.+.+.|.+. + ...+-..+..+.+.+... .+.|++||++|+|+...+|+||+.||+--
T Consensus 70 ~g~HPD~~~i~p~~~-~---~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp--------- 136 (334)
T PRK07993 70 AGTHPDYYTLTPEKG-K---SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP--------- 136 (334)
T ss_pred cCCCCCEEEEecccc-c---ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCC---------
Confidence 011111111111100 0 011222223444544443 46799999999999999999999999742
Q ss_pred ecCceEEEEccCC
Q 005186 454 SVSNAIFVTASSF 466 (710)
Q Consensus 454 d~~n~I~IlTSN~ 466 (710)
.+++||++|+-
T Consensus 137 --~~t~fiL~t~~ 147 (334)
T PRK07993 137 --ENTWFFLACRE 147 (334)
T ss_pred --CCeEEEEEECC
Confidence 46788888874
No 192
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=2.6e-07 Score=100.25 Aligned_cols=133 Identities=15% Similarity=0.188 Sum_probs=83.8
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecCCCC----CC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADLCPQ----DG 379 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~s~~----~~ 379 (710)
+.|+..+...+..++...+ -.+.+||.||.|+||+.+|+++|+.+...... -.+-.|..+ .+
T Consensus 4 yPW~~~~~~~l~~~~~~~r------------l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g 71 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGL------------GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAG 71 (325)
T ss_pred CcchHHHHHHHHHHHHcCC------------cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcC
Confidence 5799988888888876433 34689999999999999999999998753211 111112110 00
Q ss_pred CCCCCCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeec
Q 005186 380 EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSV 455 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~ 455 (710)
.+.+.+.+.|. -| ...+-.....+.+.+... ++.|++||++|+|+...+|+||+.||+--
T Consensus 72 ~HPD~~~i~p~--~~---~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp----------- 135 (325)
T PRK06871 72 NHPDFHILEPI--DN---KDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR----------- 135 (325)
T ss_pred CCCCEEEEccc--cC---CCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC-----------
Confidence 01111101110 01 012222223344444443 45799999999999999999999999742
Q ss_pred CceEEEEccCC
Q 005186 456 SNAIFVTASSF 466 (710)
Q Consensus 456 ~n~I~IlTSN~ 466 (710)
.+++||++|+-
T Consensus 136 ~~~~fiL~t~~ 146 (325)
T PRK06871 136 PNTYFLLQADL 146 (325)
T ss_pred CCeEEEEEECC
Confidence 46788888874
No 193
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.55 E-value=2e-06 Score=94.76 Aligned_cols=150 Identities=14% Similarity=0.077 Sum_probs=88.3
Q ss_pred HhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCC
Q 005186 301 ALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGE 380 (710)
Q Consensus 301 ~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e 380 (710)
.+...++||+....+|.... . ++ ..+.+|+.|+.|+|||+++|+||.+|- .--+.++|.....
T Consensus 14 ~pf~aivGqd~lk~aL~l~a----v---~P------~iggvLI~G~kGtaKSt~~Rala~LLp---~~~~V~gc~f~cd- 76 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNA----V---DP------QIGGALIAGEKGTAKSTLARALADLLP---EIEVVIGCPFNCD- 76 (423)
T ss_pred cchhhhcCchHHHHHHhhhh----c---cc------ccceeEEecCCCccHHHHHHHHHHhCC---ccceecCCCCCCC-
Confidence 45777999998766543221 1 11 345899999999999999999999882 2222235532000
Q ss_pred CCCC--------------CCcc-cc---cccccccc-----ccccc-hhhHH--------HHHHHhCCCeEEEEeccccC
Q 005186 381 MNNP--------------PKFY-HQ---VVGGDSVQ-----FRGKT-LADYV--------AWELLKKPLSVVYLENVDKA 428 (710)
Q Consensus 381 ~~~~--------------~sl~-~~---~~~G~~~~-----f~G~t-~~~~L--------~~al~~~p~sVI~LDEIDKa 428 (710)
-.++ ..+. .. .+++...+ -.|.- ....+ .+.|.+...+|+++|||.-+
T Consensus 77 P~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL 156 (423)
T COG1239 77 PDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL 156 (423)
T ss_pred CCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc
Confidence 0000 0000 00 11111111 11110 00001 12334556789999999999
Q ss_pred CHHHHHHHHhhHhCCc-ccCCCCeEeecC-ceEEEEccCCC
Q 005186 429 DVHVQNSLSKAIQTGK-LPDSYGREVSVS-NAIFVTASSFV 467 (710)
Q Consensus 429 ~~~vqn~LLq~LE~G~-l~d~~Gr~vd~~-n~I~IlTSN~g 467 (710)
+..+|+.||.++++|. ...-.|..+... +.++|.|.|--
T Consensus 157 ~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE 197 (423)
T COG1239 157 DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE 197 (423)
T ss_pred cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcc
Confidence 9999999999999993 333456554443 68899999964
No 194
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.53 E-value=5.3e-07 Score=101.05 Aligned_cols=145 Identities=13% Similarity=0.157 Sum_probs=82.8
Q ss_pred hcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCC
Q 005186 302 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 381 (710)
Q Consensus 302 L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~ 381 (710)
+. .+++-++.++.+..++.. ...++|+||+|||||++|++||..+.+. ..+.++++-.....+
T Consensus 174 l~-d~~i~e~~le~l~~~L~~---------------~~~iil~GppGtGKT~lA~~la~~l~~~-~~~~~v~~VtFHpsy 236 (459)
T PRK11331 174 LN-DLFIPETTIETILKRLTI---------------KKNIILQGPPGVGKTFVARRLAYLLTGE-KAPQRVNMVQFHQSY 236 (459)
T ss_pred hh-cccCCHHHHHHHHHHHhc---------------CCCEEEECCCCCCHHHHHHHHHHHhcCC-cccceeeEEeecccc
Confidence 44 367777777777666541 1279999999999999999999998653 233334433210001
Q ss_pred CCCCCc--cccccccccccccccchhhHHHHHHHhC--CCeEEEEeccccCCHH-HHHHHHhhHhCCc------cc----
Q 005186 382 NNPPKF--YHQVVGGDSVQFRGKTLADYVAWELLKK--PLSVVYLENVDKADVH-VQNSLSKAIQTGK------LP---- 446 (710)
Q Consensus 382 ~~~~sl--~~~~~~G~~~~f~G~t~~~~L~~al~~~--p~sVI~LDEIDKa~~~-vqn~LLq~LE~G~------l~---- 446 (710)
.-..-+ ..+...|+... ...+...+.. ...+ ...|||||||++++.. +...|+++||.+. +.
T Consensus 237 SYeDFI~G~rP~~vgy~~~--~G~f~~~~~~-A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~ 313 (459)
T PRK11331 237 SYEDFIQGYRPNGVGFRRK--DGIFYNFCQQ-AKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYS 313 (459)
T ss_pred cHHHHhcccCCCCCCeEec--CchHHHHHHH-HHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecc
Confidence 100000 02222332211 1111222222 2333 3579999999999965 6999999999642 11
Q ss_pred CCCCeEee-cCceEEEEccCC
Q 005186 447 DSYGREVS-VSNAIFVTASSF 466 (710)
Q Consensus 447 d~~Gr~vd-~~n~I~IlTSN~ 466 (710)
...+..+. -.|..||.|.|.
T Consensus 314 e~d~e~f~iP~Nl~IIgTMNt 334 (459)
T PRK11331 314 ENDEERFYVPENVYIIGLMNT 334 (459)
T ss_pred ccccccccCCCCeEEEEecCc
Confidence 11111222 268999999996
No 195
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.3e-07 Score=99.31 Aligned_cols=129 Identities=15% Similarity=0.156 Sum_probs=85.4
Q ss_pred cccccHHHHHHHHHHHHHH------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQR------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQD 378 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~ 378 (710)
.|-|-+.|.++|.+++... ..|-+ +|-..|||+||||+||++||+|+|-.. +.-|..+.-+..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR-------~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDL- 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKR-------KPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL- 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCC-------CcceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeehHHH-
Confidence 3678888888888887543 22221 345589999999999999999999876 456666544421
Q ss_pred CCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HHHHHHHHhhHhCCcccC
Q 005186 379 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKLPD 447 (710)
Q Consensus 379 ~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~vqn~LLq~LE~G~l~d 447 (710)
. ..+.|-.+ .++..|++..+++..+||||||||.+- ..+-..||--|.
T Consensus 203 ---v-------SKWmGESE-----kLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq------ 261 (439)
T KOG0739|consen 203 ---V-------SKWMGESE-----KLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ------ 261 (439)
T ss_pred ---H-------HHHhccHH-----HHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh------
Confidence 1 13344333 355678888899888999999999652 234444443332
Q ss_pred CCCeEeecCceEEEEccCCC
Q 005186 448 SYGREVSVSNAIFVTASSFV 467 (710)
Q Consensus 448 ~~Gr~vd~~n~I~IlTSN~g 467 (710)
|.-.+-..++++-+||+.
T Consensus 262 --GVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 262 --GVGNDNDGVLVLGATNIP 279 (439)
T ss_pred --ccccCCCceEEEecCCCc
Confidence 322333457788888863
No 196
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.2e-07 Score=106.54 Aligned_cols=131 Identities=21% Similarity=0.138 Sum_probs=87.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcC---C-CCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTG---H-EDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG 379 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g---~-~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~ 379 (710)
+.|.|-.+++..+.+.|.....- + ..+ -|-...+||+||||||||+||.++|... +-.||.+-..+.
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~p----lr~~~giLLyGppGcGKT~la~a~a~~~---~~~fisvKGPEl-- 737 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCP----LRLRTGILLYGPPGCGKTLLASAIASNS---NLRFISVKGPEL-- 737 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCC----cccccceEEECCCCCcHHHHHHHHHhhC---CeeEEEecCHHH--
Confidence 45778888888888777533110 0 001 1234589999999999999999999876 677777655531
Q ss_pred CCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH-----------HHHHHHHhhHhCCcccCC
Q 005186 380 EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV-----------HVQNSLSKAIQTGKLPDS 448 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~-----------~vqn~LLq~LE~G~l~d~ 448 (710)
-..|+|..+. .+..+++..+.+..+|+||||+|.+.| .|.|.||.-|+.-
T Consensus 738 ---------L~KyIGaSEq-----~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~----- 798 (952)
T KOG0735|consen 738 ---------LSKYIGASEQ-----NVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGA----- 798 (952)
T ss_pred ---------HHHHhcccHH-----HHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccc-----
Confidence 1246666543 223455555556669999999998754 6888888888632
Q ss_pred CCeEeecCceEEEEccCC
Q 005186 449 YGREVSVSNAIFVTASSF 466 (710)
Q Consensus 449 ~Gr~vd~~n~I~IlTSN~ 466 (710)
+. +..++|+++|..
T Consensus 799 ---Eg-l~GV~i~aaTsR 812 (952)
T KOG0735|consen 799 ---EG-LDGVYILAATSR 812 (952)
T ss_pred ---cc-cceEEEEEecCC
Confidence 22 455667776664
No 197
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=1.1e-06 Score=95.73 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=77.8
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecCCCC----CC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADLCPQ----DG 379 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~s~~----~~ 379 (710)
+.||..+.+.+... | |-...+||+||+|+||+++|+++|+.+...... -.+-.|... .+
T Consensus 5 yPWl~~~~~~~~~~------~---------r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g 69 (328)
T PRK05707 5 YPWQQSLWQQLAGR------G---------RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAG 69 (328)
T ss_pred CCCcHHHHHHHHHC------C---------CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcC
Confidence 57888776665331 1 345689999999999999999999999753211 011111110 00
Q ss_pred CCCCCCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeec
Q 005186 380 EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSV 455 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~ 455 (710)
...+.+.+ .++..+ ...+-..+..+.+.+... ++.|++||++|+|+...+|+||+.||+--
T Consensus 70 ~HPD~~~i-~~~~~~---~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp----------- 134 (328)
T PRK05707 70 SHPDNFVL-EPEEAD---KTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS----------- 134 (328)
T ss_pred CCCCEEEE-eccCCC---CCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCC-----------
Confidence 00000001 110000 011112223344444433 46799999999999999999999999732
Q ss_pred CceEEEEccCC
Q 005186 456 SNAIFVTASSF 466 (710)
Q Consensus 456 ~n~I~IlTSN~ 466 (710)
.+++||++|+-
T Consensus 135 ~~~~fiL~t~~ 145 (328)
T PRK05707 135 GDTVLLLISHQ 145 (328)
T ss_pred CCeEEEEEECC
Confidence 36778888875
No 198
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=4.4e-07 Score=98.26 Aligned_cols=134 Identities=9% Similarity=0.032 Sum_probs=84.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCC------
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ------ 377 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~------ 377 (710)
.-+.|+..+...+..++... |-.+.+||.||.|+||+.+|+++|+.+...+..- .-|+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~------------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~sC~~~ 68 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAG------------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELM 68 (319)
T ss_pred cCcccHHHHHHHHHHHHHcC------------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHHHHHH
Confidence 34689998888888777543 2356999999999999999999999987543211 112211
Q ss_pred -CCCCCCCCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeE
Q 005186 378 -DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 378 -~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
.+.+.+.+.+ .++..| ...+-..+..+.+.+... .+.|++||++|+|+...+|+||+.||+--
T Consensus 69 ~~g~HPD~~~i-~p~~~~---~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------- 136 (319)
T PRK06090 69 QSGNHPDLHVI-KPEKEG---KSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPA-------- 136 (319)
T ss_pred HcCCCCCEEEE-ecCcCC---CcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCC--------
Confidence 0001111001 111001 011111223344444433 36899999999999999999999999742
Q ss_pred eecCceEEEEccCC
Q 005186 453 VSVSNAIFVTASSF 466 (710)
Q Consensus 453 vd~~n~I~IlTSN~ 466 (710)
.+++||++|+-
T Consensus 137 ---~~t~fiL~t~~ 147 (319)
T PRK06090 137 ---PNCLFLLVTHN 147 (319)
T ss_pred ---CCeEEEEEECC
Confidence 46788888774
No 199
>PRK06620 hypothetical protein; Validated
Probab=98.47 E-value=2.5e-06 Score=87.42 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=45.7
Q ss_pred hHHhcCcc--eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 005186 592 QDFFNQRV--KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVL 665 (710)
Q Consensus 592 ~efl~RiD--~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl 665 (710)
+++..|+. .++.++|+|.+.+..++.+.... ..+.++++|+++|+... ..-.|.+...|+.+-
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~---------~~l~l~~ev~~~L~~~~--~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI---------SSVTISRQIIDFLLVNL--PREYSKIIEILENIN 194 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHc--cCCHHHHHHHHHHHH
Confidence 44555553 37889999999877777666543 12779999999999962 335688999999853
No 200
>PRK09087 hypothetical protein; Validated
Probab=98.47 E-value=5e-06 Score=85.92 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=46.5
Q ss_pred hHHhcCcc--eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 005186 592 QDFFNQRV--KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLV 666 (710)
Q Consensus 592 ~efl~RiD--~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~ 666 (710)
+++..|+. .++.+.|+|.+++.+++.+.+... .+.++++++++|+...- ...|.+...|.++..
T Consensus 136 ~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~---------~~~l~~ev~~~La~~~~--r~~~~l~~~l~~L~~ 201 (226)
T PRK09087 136 PDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR---------QLYVDPHVVYYLVSRME--RSLFAAQTIVDRLDR 201 (226)
T ss_pred ccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Confidence 44555553 588999999999999998877551 27799999999999732 234667776666643
No 201
>PRK12377 putative replication protein; Provisional
Probab=98.47 E-value=4.3e-07 Score=95.14 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=67.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
.+++|+||+|||||+||.+|++.+......++.+.+...-. .+ ...|........+.+.+.. ..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~-----------~l---~~~~~~~~~~~~~l~~l~~--~d 165 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS-----------RL---HESYDNGQSGEKFLQELCK--VD 165 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH-----------HH---HHHHhccchHHHHHHHhcC--CC
Confidence 48999999999999999999999876556666665543100 00 0001000011223333433 46
Q ss_pred EEEEecc--ccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 419 VVYLENV--DKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 419 VI~LDEI--DKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
||+|||| +..+...+..|+++|+... .. +.=+|+|||.....
T Consensus 166 LLiIDDlg~~~~s~~~~~~l~~ii~~R~-~~---------~~ptiitSNl~~~~ 209 (248)
T PRK12377 166 LLVLDEIGIQRETKNEQVVLNQIIDRRT-AS---------MRSVGMLTNLNHEA 209 (248)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHHH-hc---------CCCEEEEcCCCHHH
Confidence 9999999 6677888999999998532 11 11178899986544
No 202
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.44 E-value=1.1e-05 Score=84.80 Aligned_cols=50 Identities=10% Similarity=0.203 Sum_probs=40.9
Q ss_pred cchhHHhcCcceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhc
Q 005186 589 SWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAA 648 (710)
Q Consensus 589 ~f~~efl~RiD~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~ 648 (710)
+..+|+++|+- ||.-.+++.++++.|+...... -.|+++++|++.|...+
T Consensus 350 Gip~dllDRl~-Iirt~~y~~~e~r~Ii~~Ra~~---------E~l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 350 GIPPDLLDRLL-IIRTLPYDEEEIRQIIKIRAQV---------EGLQVEEEALDLLAEIG 399 (456)
T ss_pred CCCHHHhhhee-EEeeccCCHHHHHHHHHHHHhh---------hcceecHHHHHHHHhhc
Confidence 67889999996 8888899999999998765422 23889999999998864
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.43 E-value=5.1e-07 Score=81.95 Aligned_cols=121 Identities=16% Similarity=-0.025 Sum_probs=67.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccc-ccccccc-ccccccchhhHHHHHHHhCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYH-QVVGGDS-VQFRGKTLADYVAWELLKKP 416 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~-~~~~G~~-~~f~G~t~~~~L~~al~~~p 416 (710)
..++|+||+|+|||++++.||..+......++.+++..... ...... ..+.... ....+......+...++..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE----EVLDQLLLIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc----cCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 38999999999999999999998865443678888774211 000000 0000000 00111112233444555555
Q ss_pred CeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 417 LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 417 ~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
..||||||++++....+..+........ .........+..+|+++|.
T Consensus 79 ~~viiiDei~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 79 PDVLILDEITSLLDAEQEALLLLLEELR---LLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCEEEEECCcccCCHHHHHHHHhhhhhH---HHHHHHhcCCCEEEEEeCC
Confidence 6999999999998877666554321100 0001112245678898884
No 204
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7.5e-07 Score=94.32 Aligned_cols=137 Identities=16% Similarity=0.102 Sum_probs=85.5
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 385 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~ 385 (710)
|.|--+.+.++.+.|........---+-+-+++-.++|+||+|+|||.+|+++|..+ +.+|+.+-.+....
T Consensus 134 ~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv~------ 204 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALVD------ 204 (388)
T ss_pred hCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhhh------
Confidence 566666666666666543221110001112466789999999999999999999999 78888877775221
Q ss_pred CccccccccccccccccchhhHHHHHHHhCCCeEEEEecccc-----------CCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 386 KFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDK-----------ADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 386 sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDK-----------a~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
.|.|-.. .++...+...+..-.+|||+||||. ++..+|..|+.+++.=.=.| .
T Consensus 205 -----kyiGEsa-----RlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd------~ 268 (388)
T KOG0651|consen 205 -----KYIGESA-----RLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD------T 268 (388)
T ss_pred -----hhcccHH-----HHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch------h
Confidence 3333322 1222222222333349999999996 46789999999997211111 1
Q ss_pred cCceEEEEccCCC
Q 005186 455 VSNAIFVTASSFV 467 (710)
Q Consensus 455 ~~n~I~IlTSN~g 467 (710)
+..+=+|||+|..
T Consensus 269 l~rVk~ImatNrp 281 (388)
T KOG0651|consen 269 LHRVKTIMATNRP 281 (388)
T ss_pred cccccEEEecCCc
Confidence 2346699999963
No 205
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=9.2e-07 Score=101.91 Aligned_cols=136 Identities=15% Similarity=0.131 Sum_probs=88.4
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
+..|.|.++|+..+.+.+.-.+...+... ...+-+--++|.||||+|||.||+++|-.. +.||..+..+. |.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~-lGakiPkGvlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~----FV 220 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQA-LGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSD----FV 220 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHh-cccccccceeEecCCCCCcHHHHHHHhccc---CCCceeccchh----hh
Confidence 56799999999999888865542111100 001233468999999999999999999876 78888877775 33
Q ss_pred CCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH--------------HHHHHHHhhHhCCcccCC
Q 005186 383 NPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV--------------HVQNSLSKAIQTGKLPDS 448 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~--------------~vqn~LLq~LE~G~l~d~ 448 (710)
+ -++|. |...+..+.+.-+++..+||||||||.... ...|.||.-||.-. .+
T Consensus 221 e-------mfVGv-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--~~ 286 (596)
T COG0465 221 E-------MFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--GN 286 (596)
T ss_pred h-------hhcCC-----CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--CC
Confidence 2 23333 333343444444444449999999997642 35666666665221 11
Q ss_pred CCeEeecCceEEEEccCCC
Q 005186 449 YGREVSVSNAIFVTASSFV 467 (710)
Q Consensus 449 ~Gr~vd~~n~I~IlTSN~g 467 (710)
..+|+|.+||.-
T Consensus 287 -------~gviviaaTNRp 298 (596)
T COG0465 287 -------EGVIVIAATNRP 298 (596)
T ss_pred -------CceEEEecCCCc
Confidence 357888899974
No 206
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.4e-06 Score=92.59 Aligned_cols=104 Identities=19% Similarity=0.226 Sum_probs=63.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc-C-----CCcceEEecCCCCCCCCCCCCCccccccccccccccccc---hhhHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY-G-----GKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKT---LADYVA 409 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~-g-----s~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t---~~~~L~ 409 (710)
-.+|++||||+|||.|+++||+.|- + ....+|.+++. +++ ..+|+-. |+. +.+.+.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----------sLF-SKWFsES----gKlV~kmF~kI~ 242 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----------SLF-SKWFSES----GKLVAKMFQKIQ 242 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----------HHH-HHHHhhh----hhHHHHHHHHHH
Confidence 3799999999999999999999882 0 01123333332 222 2333321 221 113344
Q ss_pred HHHHhCCC-eEEEEeccccCC---------------HHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 410 WELLKKPL-SVVYLENVDKAD---------------VHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 410 ~al~~~p~-sVI~LDEIDKa~---------------~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
+.+..... -.|+|||||.+. -.|.|+||.-|+.=+- ..|+++.+|||+
T Consensus 243 ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~---------~~NvliL~TSNl 306 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR---------YPNVLILATSNL 306 (423)
T ss_pred HHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc---------CCCEEEEeccch
Confidence 44443222 247899999653 2588999988874331 258899999996
No 207
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1.8e-06 Score=94.47 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=79.1
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc---ceEEecCCCC----C
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE---NFICADLCPQ----D 378 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~---~fI~iD~s~~----~ 378 (710)
+.||..+.+.+... .+ |-...+||+||+|+||+.+|+++|+.+..... .-.+-.|... .
T Consensus 3 yPW~~~~~~~l~~~-----~~---------rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~ 68 (342)
T PRK06964 3 YPWQTDDWNRLQAL-----RA---------RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQ 68 (342)
T ss_pred CcccHHHHHHHHHh-----cC---------CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence 57888888776653 11 34569999999999999999999998864321 0011122110 1
Q ss_pred CCCCCCCCccccccc------------------ccc-c---cccccchhhHHHHHHHhC----CCeEEEEeccccCCHHH
Q 005186 379 GEMNNPPKFYHQVVG------------------GDS-V---QFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHV 432 (710)
Q Consensus 379 ~e~~~~~sl~~~~~~------------------G~~-~---~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~v 432 (710)
+.+.+.+.+.|.+.. |.. . ...+-.-+..+.+.+... .+.|++||++|+|+...
T Consensus 69 ~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~A 148 (342)
T PRK06964 69 GNHPDYRIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAA 148 (342)
T ss_pred CCCCCEEEEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHH
Confidence 101111111121110 000 0 001111122334444333 46799999999999999
Q ss_pred HHHHHhhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 433 QNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 433 qn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
+|+||+.||+-- .+++||++|+.
T Consensus 149 aNaLLKtLEEPp-----------~~t~fiL~t~~ 171 (342)
T PRK06964 149 ANALLKTLEEPP-----------PGTVFLLVSAR 171 (342)
T ss_pred HHHHHHHhcCCC-----------cCcEEEEEECC
Confidence 999999999632 46778887774
No 208
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.37 E-value=8.7e-06 Score=95.45 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=44.8
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
|+.+++.+.+ |+||++.+..|..++.....+.. +...++|+||+|+|||+++++||..+
T Consensus 76 eKyrP~~lde-----l~~~~~ki~~l~~~l~~~~~~~~--------~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 76 EKYKPETQHE-----LAVHKKKIEEVETWLKAQVLENA--------PKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhCCCCHHH-----hcCcHHHHHHHHHHHHhcccccC--------CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5555555544 99999999998888765433211 22369999999999999999999877
No 209
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.36 E-value=3.7e-05 Score=80.29 Aligned_cols=69 Identities=9% Similarity=0.138 Sum_probs=45.9
Q ss_pred HHhcCcceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 005186 593 DFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRG 668 (710)
Q Consensus 593 efl~RiD~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~~~ 668 (710)
.|..|+...+.+.|++.+++.+.+...+... |......+++++++.|.+.+ ..-.|.|......++..+
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~-----g~~~~~~~~~~~~~~i~~~s--~G~p~~i~~l~~~~~~~a 246 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRLERA-----GNRDAPVFSEGAFDAIHRFS--RGIPRLINILCDRLLLSA 246 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHHHHc-----CCCCCCCcCHHHHHHHHHHc--CCcccHHHHHHHHHHHHH
Confidence 4566777788999999999988888776432 22223568999999998852 222345555555554433
No 210
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.1e-06 Score=90.91 Aligned_cols=127 Identities=21% Similarity=0.233 Sum_probs=79.6
Q ss_pred cccccHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 305 KIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~--------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.|.|-+..|..+.++|... ..|+ +|+-.+|++||||+|||.|||+-|..- +.-|+.+-...
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi--------~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQ 240 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGI--------RPPKGVLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQ 240 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCC--------CCCCceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchH
Confidence 3777787888888887532 2233 355579999999999999999998654 33344332221
Q ss_pred CCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----------CHHHHHHHHhhHhC--C
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQT--G 443 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-----------~~~vqn~LLq~LE~--G 443 (710)
+. +-|+|. |..++..-+...+++..+||||||+|.+ +.+||..+|.+|.. |
T Consensus 241 ----LV-------QMfIGd-----GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG 304 (424)
T KOG0652|consen 241 ----LV-------QMFIGD-----GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 304 (424)
T ss_pred ----HH-------hhhhcc-----hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC
Confidence 00 123332 2233333333344556699999999965 46899999999862 3
Q ss_pred cccCCCCeEeecCceEEEEccCC
Q 005186 444 KLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 444 ~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.-.+ ..+-+|++||.
T Consensus 305 Fss~--------~~vKviAATNR 319 (424)
T KOG0652|consen 305 FSSD--------DRVKVIAATNR 319 (424)
T ss_pred CCCc--------cceEEEeeccc
Confidence 2111 23458999996
No 211
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.3e-06 Score=94.52 Aligned_cols=139 Identities=18% Similarity=0.143 Sum_probs=82.8
Q ss_pred CcccccHHHHHHHHHHHHHHhc--CCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRT--GHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~--g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~ 381 (710)
..|.|-+..+.++.+.+..... .+-. .+.-.++.-.+||+||||||||++|+++|+.. +.+||.+.++....
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~-~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt~-- 165 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFA-KGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLTS-- 165 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhc-ccccccCCccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccch--
Confidence 4466777777777666653211 1111 12223566789999999999999999999988 78999999996321
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC--------H---HHHHHHHhhHhCCcccCCCC
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD--------V---HVQNSLSKAIQTGKLPDSYG 450 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~--------~---~vqn~LLq~LE~G~l~d~~G 450 (710)
.++|..+. ++..+.-.-.+-..+||||||||-+- . -.-+.|+-.. +|-.++.+
T Consensus 166 ---------KWfgE~eK-----lv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~W-DGl~s~~~- 229 (386)
T KOG0737|consen 166 ---------KWFGEAQK-----LVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALW-DGLSSKDS- 229 (386)
T ss_pred ---------hhHHHHHH-----HHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHh-ccccCCCC-
Confidence 34443332 12222222234345899999999642 1 1222222222 24333322
Q ss_pred eEeecCceEEEEccCCCcc
Q 005186 451 REVSVSNAIFVTASSFVED 469 (710)
Q Consensus 451 r~vd~~n~I~IlTSN~g~~ 469 (710)
..++|+.+||..++
T Consensus 230 -----~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 230 -----ERVLVLGATNRPFD 243 (386)
T ss_pred -----ceEEEEeCCCCCcc
Confidence 23778888997654
No 212
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.33 E-value=8e-06 Score=95.73 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=84.3
Q ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 296 KTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 296 k~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..|.+.+.-.|+|.++++++|+-.+.-+-.. ..+.+...|+++++||.|-||+||+.|-+.+++.+.+ ..+...-.+
T Consensus 278 ~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k-~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr--~vytsgkgs 354 (682)
T COG1241 278 DILIKSIAPSIYGHEDVKKAILLQLFGGVKK-NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR--GVYTSGKGS 354 (682)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHhcCCCcc-cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc--eEEEccccc
Confidence 3444556778999999887776555422111 1122333578899999999999999999999987732 112221122
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCC
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS 448 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~ 448 (710)
...+ +. .++......| + | . .=.+++--+..+|..|||+|||+...+++|..+||.+.++-+
T Consensus 355 s~~G-LT--Aav~rd~~tg-e--~---~---LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIa 415 (682)
T COG1241 355 SAAG-LT--AAVVRDKVTG-E--W---V---LEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIA 415 (682)
T ss_pred cccC-ce--eEEEEccCCC-e--E---E---EeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeec
Confidence 1000 00 0000000011 0 0 0 012344455679999999999999999999999998887654
No 213
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=6.6e-06 Score=89.54 Aligned_cols=124 Identities=16% Similarity=0.174 Sum_probs=71.5
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc---ceEEecCCC---C-C
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE---NFICADLCP---Q-D 378 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~---~fI~iD~s~---~-~ 378 (710)
+.|++.+.+.|... .+ |-.+.+||+||+|+||+++|+.+|+.+..... .-.+-.|.. . .
T Consensus 3 yPW~~~~w~~l~~~-----~~---------r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~ 68 (325)
T PRK08699 3 YPWHQEQWRQIAEH-----WE---------RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQ 68 (325)
T ss_pred CCccHHHHHHHHHh-----cC---------CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhc
Confidence 57888887776644 11 24568999999999999999999999863211 001111211 0 0
Q ss_pred CCCCCCCCccccc---cccccccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCC
Q 005186 379 GEMNNPPKFYHQV---VGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 379 ~e~~~~~sl~~~~---~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
+...+.+.+.|.+ -.|......+-..+..+.+.+... .+.|+++|+++.+++..++.|++.||+.
T Consensus 69 ~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep 140 (325)
T PRK08699 69 GSHPDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP 140 (325)
T ss_pred CCCCCEEEEecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC
Confidence 1011111111111 001000001111223344555443 4579999999999999999999999975
No 214
>PRK08116 hypothetical protein; Validated
Probab=98.27 E-value=4.8e-06 Score=88.21 Aligned_cols=108 Identities=9% Similarity=0.118 Sum_probs=69.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
.+++|+|++|+|||+||.+|++.+.....+++.+++...-..+ ...+.+.. ......+.+.+.. ..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i-------~~~~~~~~-----~~~~~~~~~~l~~--~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI-------KSTYKSSG-----KEDENEIIRSLVN--AD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH-------HHHHhccc-----cccHHHHHHHhcC--CC
Confidence 3799999999999999999999987556677777765310000 00010000 0001223444443 35
Q ss_pred EEEEecc--ccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 419 VVYLENV--DKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 419 VI~LDEI--DKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
+|+|||+ ++.....+..|+.+|+.. +. . +..+|+|||.....
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r-~~--~-------~~~~IiTsN~~~~e 224 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSR-YR--K-------GLPTIVTTNLSLEE 224 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHH-HH--C-------CCCEEEECCCCHHH
Confidence 9999999 678888999999999853 21 1 12389999975543
No 215
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=3.2e-06 Score=90.32 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=69.3
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCC-CCCCCCCccccccccccccccccchhhHHHHHHHhC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG-EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK 415 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~-e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~ 415 (710)
-.+.+||.||.|+||+.+|.++|+.++....+- .|..... .+.+.+.+.|.+. + ...+-.....+.+.+...
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c~~~~~~~HPD~~~i~p~~~-~---~~I~idqiR~l~~~~~~~ 90 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPE---AAYKISQKIHPDIHEFSPQGK-G---RLHSIETPRAIKKQIWIH 90 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HHHHHhcCCCCCEEEEecCCC-C---CcCcHHHHHHHHHHHhhC
Confidence 356999999999999999999999997543221 1211000 0111111111110 0 001111223344555444
Q ss_pred C----CeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 416 P----LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 416 p----~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
| +.|++||++|+|+.+.+|+||+.||+-- .+++||+.|+-
T Consensus 91 p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp-----------~~~~fiL~~~~ 134 (290)
T PRK05917 91 PYESPYKIYIIHEADRMTLDAISAFLKVLEDPP-----------QHGVIILTSAK 134 (290)
T ss_pred ccCCCceEEEEechhhcCHHHHHHHHHHhhcCC-----------CCeEEEEEeCC
Confidence 4 5799999999999999999999999732 46778887774
No 216
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.5e-06 Score=91.32 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=61.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHh-CCCe
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLS 418 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-~p~s 418 (710)
.+||+|||||||+.|..|||..| +..+.-+++++.. .+ +.|...+.. .+.+
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~----------------~n---------~dLr~LL~~t~~kS 288 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVK----------------LD---------SDLRHLLLATPNKS 288 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc---CCceEEeeecccc----------------Cc---------HHHHHHHHhCCCCc
Confidence 69999999999999999999999 5666656665411 11 235555555 4578
Q ss_pred EEEEeccccCCH------------------HHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 419 VVYLENVDKADV------------------HVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 419 VI~LDEIDKa~~------------------~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
||+|++||.+-. -....||..++ |--. +.| ..-|||||||.
T Consensus 289 IivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiD-GlwS-scg-----~ERIivFTTNh 347 (457)
T KOG0743|consen 289 ILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLD-GLWS-SCG-----DERIIVFTTNH 347 (457)
T ss_pred EEEEeecccccccccccccccccccCCcceeehHHhhhhhc-cccc-cCC-----CceEEEEecCC
Confidence 999999997611 22344666664 2211 111 23589999995
No 217
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.15 E-value=4.6e-05 Score=80.62 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=51.2
Q ss_pred HhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 301 ALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 301 ~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
+..+..+||-.|-++....++..+.|-- .-..+|+.|+||+|||.+|-.+|+.| |...||..+-.++
T Consensus 37 ~~s~GmVGQ~~AR~Aagvi~kmi~egki--------aGraiLiaG~pgtGKtAiAmg~sksL-G~~tpF~~i~gSE 103 (454)
T KOG2680|consen 37 YVSEGMVGQVKARKAAGVILKMIREGKI--------AGRAILIAGQPGTGKTAIAMGMSKSL-GDDTPFTSISGSE 103 (454)
T ss_pred cccccchhhHHHHHHhHHHHHHHHcCcc--------cceEEEEecCCCCCceeeeeehhhhh-CCCCceeeeecce
Confidence 3467799999988776666666665421 12389999999999999999999988 7778888775553
No 218
>PRK06526 transposase; Provisional
Probab=98.06 E-value=3.3e-06 Score=88.78 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=62.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHh-CCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPL 417 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-~p~ 417 (710)
.+++|+||+|+|||.||.+|+..+...+..++.+.+.. ++..-...... +.+...+.. ...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~----------l~~~l~~~~~~--------~~~~~~l~~l~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ----------WVARLAAAHHA--------GRLQAELVKLGRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH----------HHHHHHHHHhc--------CcHHHHHHHhccC
Confidence 37999999999999999999988754444433333321 00000000000 111222222 345
Q ss_pred eEEEEeccccC--CHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 418 SVVYLENVDKA--DVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 418 sVI~LDEIDKa--~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
.+|+|||++.. ++..++.|+++++... . +.-+|+|||.....
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~-~----------~~s~IitSn~~~~~ 204 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRY-E----------RASLIVTSNKPFGR 204 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHH-h----------cCCEEEEcCCCHHH
Confidence 79999999976 4788889999997421 1 11288899986554
No 219
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=1.9e-05 Score=84.62 Aligned_cols=128 Identities=18% Similarity=0.214 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecCCCC----CCCC
Q 005186 308 WQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADLCPQ----DGEM 381 (710)
Q Consensus 308 GQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~s~~----~~e~ 381 (710)
+|..++..+..++...+ -.+.+||.|| +||+.+|+++|+.++..+.. -.+-.|... .+.+
T Consensus 6 ~q~~~~~~L~~~~~~~r------------l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~H 71 (290)
T PRK07276 6 KQPKVFQRFQTILEQDR------------LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEF 71 (290)
T ss_pred HHHHHHHHHHHHHHcCC------------cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46777777777776433 3468999996 68999999999998754311 111112110 1111
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCc
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSN 457 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n 457 (710)
.+.+-+.|.+ ...+..-+..+...+.. .++.|++||++|+|+...+|+||+.||+-- .+
T Consensus 72 PD~~~i~p~~------~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp-----------~~ 134 (290)
T PRK07276 72 SDVTVIEPQG------QVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQ-----------SE 134 (290)
T ss_pred CCeeeecCCC------CcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCC-----------CC
Confidence 1111111111 01111112334444443 346799999999999999999999999742 46
Q ss_pred eEEEEccCC
Q 005186 458 AIFVTASSF 466 (710)
Q Consensus 458 ~I~IlTSN~ 466 (710)
++||++|+-
T Consensus 135 t~~iL~t~~ 143 (290)
T PRK07276 135 IYIFLLTND 143 (290)
T ss_pred eEEEEEECC
Confidence 788888763
No 220
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.02 E-value=1.6e-05 Score=85.83 Aligned_cols=105 Identities=12% Similarity=0.014 Sum_probs=61.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
..++|+||+|||||+||.|||..+...+.+...+.+...-.++. ..++ . .+ ...+.+.+.+ ..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk--------~~~~--~----~~-~~~~l~~l~~--~d 219 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK--------NSIS--D----GS-VKEKIDAVKE--AP 219 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH--------HHHh--c----Cc-HHHHHHHhcC--CC
Confidence 37999999999999999999999875555555554442100000 0000 0 01 1233344444 35
Q ss_pred EEEEecccc--CCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCcc
Q 005186 419 VVYLENVDK--ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 469 (710)
Q Consensus 419 VI~LDEIDK--a~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~ 469 (710)
||+||||.. +++-+...|+..+=+.++.. +--.|+|||....
T Consensus 220 lLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~---------~~~ti~TSNl~~~ 263 (306)
T PRK08939 220 VLMLDDIGAEQMSSWVRDEVLGVILQYRMQE---------ELPTFFTSNFDFD 263 (306)
T ss_pred EEEEecCCCccccHHHHHHHHHHHHHHHHHC---------CCeEEEECCCCHH
Confidence 999999975 45555555555442233221 1228999997543
No 221
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.8e-05 Score=95.63 Aligned_cols=142 Identities=17% Similarity=0.149 Sum_probs=88.9
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
.+.|.|-+..|..+.+.+.....-...-...+.-|+--+||+||+|+|||.+|++||...-..+.. +.+.|..-.+
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~k-isffmrkgaD--- 339 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRK-ISFFMRKGAD--- 339 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccc-cchhhhcCch---
Confidence 466888888888888877643221000000001133469999999999999999999987543332 3333332000
Q ss_pred CCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEecccc-----------CCHHHHHHHHhhHhCCcccCCCCe
Q 005186 383 NPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDK-----------ADVHVQNSLSKAIQTGKLPDSYGR 451 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDK-----------a~~~vqn~LLq~LE~G~l~d~~Gr 451 (710)
. -..++|..+. .+..+.+..++...+||||||||- .|..+...||-+|+ |- ++.|
T Consensus 340 -~----lskwvgEaER-----qlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmd-Gl--dsRg- 405 (1080)
T KOG0732|consen 340 -C----LSKWVGEAER-----QLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMD-GL--DSRG- 405 (1080)
T ss_pred -h----hccccCcHHH-----HHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhcc-CC--CCCC-
Confidence 0 1234554432 234577777888889999999993 34577888888886 32 3333
Q ss_pred EeecCceEEEEccCCC
Q 005186 452 EVSVSNAIFVTASSFV 467 (710)
Q Consensus 452 ~vd~~n~I~IlTSN~g 467 (710)
.+++|-+||..
T Consensus 406 -----qVvvigATnRp 416 (1080)
T KOG0732|consen 406 -----QVVVIGATNRP 416 (1080)
T ss_pred -----ceEEEcccCCc
Confidence 57788899863
No 222
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.00 E-value=1.6e-05 Score=83.31 Aligned_cols=121 Identities=14% Similarity=0.174 Sum_probs=78.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC---CCCCcc---ccccccccccccccchhhHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN---NPPKFY---HQVVGGDSVQFRGKTLADYVAWEL 412 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~---~~~sl~---~~~~~G~~~~f~G~t~~~~L~~al 412 (710)
.+++|+||+|+||.+.+.+|-+.+||.+..-.+++.......-. +...+. .-+....+.|+......+.+...+
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 38999999999999999999999999766656655543100000 000000 001112233332333344444433
Q ss_pred H---------hCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 413 L---------KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 413 ~---------~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
. ++++.||+|-|+|++..++|.+|.+.||.- -+++.+|+.+|-.+..
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY-----------s~~~RlIl~cns~Sri 170 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKY-----------SSNCRLILVCNSTSRI 170 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHH-----------hcCceEEEEecCcccc
Confidence 3 346889999999999999999999999943 2577899998865543
No 223
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.98 E-value=0.00026 Score=78.95 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=42.3
Q ss_pred eeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 005186 601 IVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGF 669 (710)
Q Consensus 601 iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~~~L 669 (710)
++...|+|.+....++.+... ...++++++++++|+.. +.+ ..|.|+..++++...++
T Consensus 238 ~~~I~~Pd~e~r~aiL~kka~---------~~~~~i~~ev~~~la~~-~~~-nvReLegaL~~l~~~a~ 295 (408)
T COG0593 238 VVEIEPPDDETRLAILRKKAE---------DRGIEIPDEVLEFLAKR-LDR-NVRELEGALNRLDAFAL 295 (408)
T ss_pred EEeeCCCCHHHHHHHHHHHHH---------hcCCCCCHHHHHHHHHH-hhc-cHHHHHHHHHHHHHHHH
Confidence 677788999998888887332 22378999999999986 222 45788888887765544
No 224
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.97 E-value=4.6e-05 Score=79.79 Aligned_cols=106 Identities=9% Similarity=0.126 Sum_probs=66.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccccccccccc-ccchhhHHHHHHHhCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFR-GKTLADYVAWELLKKPL 417 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~-G~t~~~~L~~al~~~p~ 417 (710)
.+++|+|++|+|||+||.+||..+......++.+++...-. .+.+ .|. .......+...+.. .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~-----------~l~~---~~~~~~~~~~~~l~~l~~--~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS-----------AMKD---TFSNSETSEEQLLNDLSN--V 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH-----------HHHH---HHhhccccHHHHHHHhcc--C
Confidence 38999999999999999999999876666777776653100 0000 000 00001233444443 4
Q ss_pred eEEEEeccccCC--HHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 418 SVVYLENVDKAD--VHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 418 sVI~LDEIDKa~--~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
.+|+|||++... .-....|.++++. ++.. +--+|+|||.....
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~-Ry~~---------~~~tiitSNl~~~~ 208 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDR-RSSS---------KRPTGMLTNSNMEE 208 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHH-HHhC---------CCCEEEeCCCCHHH
Confidence 699999998764 3345678888874 3221 12389999986554
No 225
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.4e-05 Score=87.23 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=66.5
Q ss_pred cCcccccHHHHHHHHHHHHHHh------cCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRR------TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r------~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
-..+.|.+.|...+..++.... .|++. +...+||.||+|+|||+|++|||-.. ...|..+..+.
T Consensus 152 ~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~-------p~rglLLfGPpgtGKtmL~~aiAsE~---~atff~iSass 221 (428)
T KOG0740|consen 152 WDDIAGLEDAKQSLKEAVILPLLRPDLFLGLRE-------PVRGLLLFGPPGTGKTMLAKAIATES---GATFFNISASS 221 (428)
T ss_pred ccCCcchhhHHHHhhhhhhhcccchHhhhcccc-------ccchhheecCCCCchHHHHHHHHhhh---cceEeeccHHH
Confidence 3557888888888877765432 22222 34589999999999999999999877 45555544443
Q ss_pred CCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA 428 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa 428 (710)
.. ..|+|..+ .++..+...-+....+|||+||||++
T Consensus 222 Lt-----------sK~~Ge~e-----K~vralf~vAr~~qPsvifidEidsl 257 (428)
T KOG0740|consen 222 LT-----------SKYVGESE-----KLVRALFKVARSLQPSVIFIDEIDSL 257 (428)
T ss_pred hh-----------hhccChHH-----HHHHHHHHHHHhcCCeEEEechhHHH
Confidence 21 23444332 23344555556677899999999863
No 226
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=1.8e-05 Score=83.22 Aligned_cols=113 Identities=15% Similarity=0.046 Sum_probs=70.4
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC---C-CCCCCCCCCccccccccccccccccchhhHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP---Q-DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL 412 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~---~-~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al 412 (710)
+++.+||+||.|+||..+|.++|+.+......-.+-.|.. . .+.+.+.+-+.|.+ .-.+......+.+.+
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~------~~I~id~ir~l~~~l 79 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK------NPIKKEDALSIINKL 79 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc------ccCCHHHHHHHHHHH
Confidence 4579999999999999999999999875432211111111 0 01111111111111 011222223344444
Q ss_pred Hh-----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 413 LK-----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 413 ~~-----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.. ..+.|++|+++|+|+....|+||+.||+-- .+++||++|+-
T Consensus 80 ~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp-----------~~t~fiLit~~ 127 (261)
T PRK05818 80 NRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPP-----------KNTYGIFTTRN 127 (261)
T ss_pred ccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCC-----------CCeEEEEEECC
Confidence 32 346899999999999999999999999742 47888888874
No 227
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.95 E-value=2.5e-05 Score=91.14 Aligned_cols=112 Identities=12% Similarity=-0.018 Sum_probs=74.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccccccccc----ccccchhhHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQ----FRGKTLADYVAWELL 413 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~----f~G~t~~~~L~~al~ 413 (710)
.+-+++.|+.|+||++++++|+..|-. ..||+.+-.+. +...++|--+- -.|... .-.+.|.
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~~-----------t~~~L~Gg~Dl~~~l~~g~~~--~~pGlla 90 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPGI-----------ADDRLLGGLDLAATLRAGRPV--AQRGLLA 90 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCCC-----------cHHHccCCchHHhHhhcCCcC--CCCCcee
Confidence 358999999999999999999998832 34666654442 11234442100 001100 0123445
Q ss_pred hCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCC-CCeEeecC-ceEEEEc
Q 005186 414 KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS-YGREVSVS-NAIFVTA 463 (710)
Q Consensus 414 ~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~-~Gr~vd~~-n~I~IlT 463 (710)
...++||||||+..+++.+++.|+++|++|.++-. .|..+.+. +.++|.|
T Consensus 91 ~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat 142 (584)
T PRK13406 91 EADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVAL 142 (584)
T ss_pred eccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec
Confidence 56679999999999999999999999999987753 34555553 3555554
No 228
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.95 E-value=3.7e-05 Score=83.80 Aligned_cols=107 Identities=13% Similarity=0.114 Sum_probs=67.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
.+++|+||+|+|||+||.+||..+...+..++.+.+...-..+. ...+ +.. ... ....+.+... .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~-------~~~~--~~~---~~~-~~~~~~l~~~--D 248 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR-------EIRF--NND---KEL-EEVYDLLINC--D 248 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH-------HHHh--ccc---hhH-HHHHHHhccC--C
Confidence 47999999999999999999999877666777776653100000 0000 000 000 0112333333 5
Q ss_pred EEEEecc--ccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 419 VVYLENV--DKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 419 VI~LDEI--DKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
+|+||++ +..++..+..|+.+++..... + .-+|+|||.....
T Consensus 249 LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~---~-------k~tIiTSNl~~~e 292 (329)
T PRK06835 249 LLIIDDLGTEKITEFSKSELFNLINKRLLR---Q-------KKMIISTNLSLEE 292 (329)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHHHC---C-------CCEEEECCCCHHH
Confidence 9999999 455778888999998753211 1 1289999986544
No 229
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.94 E-value=6e-06 Score=82.29 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=64.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
.+++|+||+|+|||+||.+|+..+...+.+...+++...-.++. .. +.. .. ...+...+.+. .
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~-------~~---~~~----~~-~~~~~~~l~~~--d 110 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK-------QS---RSD----GS-YEELLKRLKRV--D 110 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH-------CC---HCC----TT-HCHHHHHHHTS--S
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc-------cc---ccc----cc-hhhhcCccccc--c
Confidence 38999999999999999999998877677777776663100000 00 000 01 12344555544 5
Q ss_pred EEEEeccccC--CHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 419 VVYLENVDKA--DVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 419 VI~LDEIDKa--~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
+++|||+... .....+.|+++|+... . ++. .|+|||.....
T Consensus 111 lLilDDlG~~~~~~~~~~~l~~ii~~R~-~---------~~~-tIiTSN~~~~~ 153 (178)
T PF01695_consen 111 LLILDDLGYEPLSEWEAELLFEIIDERY-E---------RKP-TIITSNLSPSE 153 (178)
T ss_dssp CEEEETCTSS---HHHHHCTHHHHHHHH-H---------T-E-EEEEESS-HHH
T ss_pred EecccccceeeecccccccchhhhhHhh-c---------ccC-eEeeCCCchhh
Confidence 9999999865 4567888888887532 1 122 67799986543
No 230
>PF13173 AAA_14: AAA domain
Probab=97.94 E-value=3e-05 Score=72.68 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=55.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 419 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sV 419 (710)
++++.||.|||||++++.+++.+. ....++.+|+..... ..... ......+.+.+ .....+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~-------------~~~~~----~~~~~~~~~~~-~~~~~~ 64 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRD-------------RRLAD----PDLLEYFLELI-KPGKKY 64 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHH-------------HHHhh----hhhHHHHHHhh-ccCCcE
Confidence 799999999999999999998875 456788888875211 00000 00111222221 124579
Q ss_pred EEEeccccCCHHHHHHHHhhHhCC
Q 005186 420 VYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 420 I~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
||||||.+++ +....+..+.+++
T Consensus 65 i~iDEiq~~~-~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 65 IFIDEIQYLP-DWEDALKFLVDNG 87 (128)
T ss_pred EEEehhhhhc-cHHHHHHHHHHhc
Confidence 9999999996 6777777777754
No 231
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.94 E-value=2.8e-05 Score=70.90 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=59.6
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCC-----cceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhC
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGK-----ENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK 415 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~-----~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~ 415 (710)
+.|+||+|+|||.+|+.|++.+...- ..+...+... .+-.+|.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~-----------------~~w~gY~--------------- 48 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD-----------------KFWDGYQ--------------- 48 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc-----------------chhhccC---------------
Confidence 47899999999999999998884211 1111101100 0001111
Q ss_pred CCeEEEEeccccCCHH----HHHHHHhhHhCCcccCCC----CeEeecCceEEEEccCC
Q 005186 416 PLSVVYLENVDKADVH----VQNSLSKAIQTGKLPDSY----GREVSVSNAIFVTASSF 466 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~----vqn~LLq~LE~G~l~d~~----Gr~vd~~n~I~IlTSN~ 466 (710)
...|+++||+...... ....|+++++...+.-.. .+...|.--+||+|||.
T Consensus 49 ~q~vvi~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 49 GQPVVIIDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred CCcEEEEeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 2358999999988754 788899999887765421 11244555789999983
No 232
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0002 Score=78.60 Aligned_cols=26 Identities=31% Similarity=0.160 Sum_probs=23.5
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
+--++||+||||+|||+.|+.||+..
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~S 408 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHS 408 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhc
Confidence 44589999999999999999999876
No 233
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.92 E-value=0.0004 Score=71.86 Aligned_cols=120 Identities=16% Similarity=0.129 Sum_probs=87.2
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 385 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~ 385 (710)
++|-+...+++.+.-.+...|. |..++||+|.-|+||+.++||+...+.+....+|.|+=....
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~------- 125 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA------- 125 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh-------
Confidence 6777888788887777776653 445899999999999999999999987777777776554310
Q ss_pred CccccccccccccccccchhhHHHHHHHhCCCe-EEEEecccc-CCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEc
Q 005186 386 KFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS-VVYLENVDK-ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 463 (710)
Q Consensus 386 sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s-VI~LDEIDK-a~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlT 463 (710)
-+-.|.+.++..|.. |||+|+.-- -+......|.-+||.|.- ++. .|++|.+|
T Consensus 126 ------------------~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve----~rP---~NVl~YAT 180 (287)
T COG2607 126 ------------------TLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVE----GRP---ANVLFYAT 180 (287)
T ss_pred ------------------hHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcc----cCC---CeEEEEEe
Confidence 013577788877755 678887653 345667788888875542 222 68999999
Q ss_pred cCC
Q 005186 464 SSF 466 (710)
Q Consensus 464 SN~ 466 (710)
||.
T Consensus 181 SNR 183 (287)
T COG2607 181 SNR 183 (287)
T ss_pred cCC
Confidence 995
No 234
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.92 E-value=4.3e-06 Score=77.42 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=62.6
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCC-----CcceEEecCCCCCCCCCCCCCcc--cccccccccc--ccccchhhHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGG-----KENFICADLCPQDGEMNNPPKFY--HQVVGGDSVQ--FRGKTLADYV 408 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs-----~~~fI~iD~s~~~~e~~~~~sl~--~~~~~G~~~~--f~G~t~~~~L 408 (710)
...++++||+|+|||.+++.+++.+... ..+++.+++..... ...+. -...++.... .........+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRT----PRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSS----HHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCC----HHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 3589999999999999999999877421 46677787774211 11111 0001111111 0112233567
Q ss_pred HHHHHhCCCeEEEEeccccC-CHHHHHHHHhhHh
Q 005186 409 AWELLKKPLSVVYLENVDKA-DVHVQNSLSKAIQ 441 (710)
Q Consensus 409 ~~al~~~p~sVI~LDEIDKa-~~~vqn~LLq~LE 441 (710)
...+.+....+|+|||+|.+ +..+.+.|..+++
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN 113 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh
Confidence 77777776679999999999 9999999988777
No 235
>PRK08181 transposase; Validated
Probab=97.91 E-value=1.7e-05 Score=84.10 Aligned_cols=103 Identities=11% Similarity=0.066 Sum_probs=63.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 419 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sV 419 (710)
+++|+||+|+|||.||.+|+..+...+..++.+.+... +..-...... .. ...+...+.+ ..+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L----------~~~l~~a~~~----~~-~~~~l~~l~~--~dL 170 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL----------VQKLQVARRE----LQ-LESAIAKLDK--FDL 170 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH----------HHHHHHHHhC----Cc-HHHHHHHHhc--CCE
Confidence 79999999999999999999988655555555555421 0000000000 01 1122333333 469
Q ss_pred EEEeccccCC--HHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 420 VYLENVDKAD--VHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 420 I~LDEIDKa~--~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
|+|||++... ...+..|+++++. +... .-+|+|||.....
T Consensus 171 LIIDDlg~~~~~~~~~~~Lf~lin~-R~~~----------~s~IiTSN~~~~~ 212 (269)
T PRK08181 171 LILDDLAYVTKDQAETSVLFELISA-RYER----------RSILITANQPFGE 212 (269)
T ss_pred EEEeccccccCCHHHHHHHHHHHHH-HHhC----------CCEEEEcCCCHHH
Confidence 9999998764 4667789999973 2111 1189999986554
No 236
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=1.5e-05 Score=89.55 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=66.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHh---CC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK---KP 416 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~---~p 416 (710)
.+||+||||||||.+||.|...|-..+... +|..+ + -..|+|..+.-+.+-+.+.=.+.-+. ..
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKI--VNGPe----------I-L~KYVGeSE~NvR~LFaDAEeE~r~~g~~Sg 324 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKI--VNGPE----------I-LNKYVGESEENVRKLFADAEEEQRRLGANSG 324 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcc--cCcHH----------H-HHHhhcccHHHHHHHHHhHHHHHHhhCccCC
Confidence 699999999999999999999985543332 23332 1 12466665542222111111111111 12
Q ss_pred CeEEEEecccc-------------CCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 417 LSVVYLENVDK-------------ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 417 ~sVI~LDEIDK-------------a~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
--||+|||||. .|..|.|.||.-|+.- -.+.|.++|-.||.
T Consensus 325 LHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV---------eqLNNILVIGMTNR 378 (744)
T KOG0741|consen 325 LHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV---------EQLNNILVIGMTNR 378 (744)
T ss_pred ceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH---------HhhhcEEEEeccCc
Confidence 34999999995 4678999999888621 13678999999996
No 237
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=4.8e-05 Score=90.24 Aligned_cols=114 Identities=22% Similarity=0.284 Sum_probs=82.1
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC-------CcceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs-------~~~fI~iD~s~ 376 (710)
+-|||.++-|+.+.+.|.+.. ..+-+|+|++|||||.++.-||..+... +..++.+||+.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~ 236 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS 236 (786)
T ss_pred CCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH
Confidence 459999988888877775322 2256789999999999999999877543 34477888885
Q ss_pred CCCCCCCCCCcccccccccccccccc--chhhHHHHHHHhCCCeEEEEeccccC---------CHHHHHHHHhhHhCCcc
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGK--TLADYVAWELLKKPLSVVYLENVDKA---------DVHVQNSLSKAIQTGKL 445 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~--t~~~~L~~al~~~p~sVI~LDEIDKa---------~~~vqn~LLq~LE~G~l 445 (710)
. . ....|+|. .-...+.+.+.+.+.-|+|||||+.+ ..++-|.|..+|-.|.+
T Consensus 237 L----v------------AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL 300 (786)
T COG0542 237 L----V------------AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL 300 (786)
T ss_pred H----h------------ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCe
Confidence 2 1 12234442 12234566777777889999999853 26799999999999876
Q ss_pred c
Q 005186 446 P 446 (710)
Q Consensus 446 ~ 446 (710)
.
T Consensus 301 ~ 301 (786)
T COG0542 301 R 301 (786)
T ss_pred E
Confidence 4
No 238
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.84 E-value=4.9e-06 Score=90.77 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=87.2
Q ss_pred HhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEe
Q 005186 293 SNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICA 372 (710)
Q Consensus 293 ~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~i 372 (710)
..+..|.+.+--.|+|.+.++.+|.-.+...... ..+.+...|...++||+|.||+||+.|.+.+++.. ..-++.
T Consensus 13 ~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~-~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~----pr~v~~ 87 (331)
T PF00493_consen 13 NIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEK-NDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA----PRSVYT 87 (331)
T ss_dssp THHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SC-CCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-----SSEEEE
T ss_pred cHHHHHHHHhCCcCcCcHHHHHHHHHHHHhcccc-ccccccccccccceeeccchhhhHHHHHHHHHhhC----CceEEE
Confidence 4567778888889999988776654443322110 01111123567899999999999999999887655 223333
Q ss_pred cCCCCCCCCCCCCCccccccccc---cccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCC
Q 005186 373 DLCPQDGEMNNPPKFYHQVVGGD---SVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 373 D~s~~~~e~~~~~sl~~~~~~G~---~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~ 449 (710)
...... ..|+... +.. .|...+ -.+++-.+..+|++|||+||++...+..|+++||.|.+.-..
T Consensus 88 ~g~~~s----------~~gLta~~~~d~~-~~~~~l--eaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~k 154 (331)
T PF00493_consen 88 SGKGSS----------AAGLTASVSRDPV-TGEWVL--EAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAK 154 (331)
T ss_dssp ECCGST----------CCCCCEEECCCGG-TSSECE--EE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECT
T ss_pred CCCCcc----------cCCccceeccccc-cceeEE--eCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccch
Confidence 333110 0111111 111 111111 124455567799999999999999999999999999987654
Q ss_pred -CeEeec-CceEEEEccCC
Q 005186 450 -GREVSV-SNAIFVTASSF 466 (710)
Q Consensus 450 -Gr~vd~-~n~I~IlTSN~ 466 (710)
|-...+ .++-|++++|.
T Consensus 155 agi~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 155 AGIVTTLNARCSVLAAANP 173 (331)
T ss_dssp SSSEEEEE---EEEEEE--
T ss_pred hhhcccccchhhhHHHHhh
Confidence 333333 24678888885
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.80 E-value=5.1e-05 Score=79.91 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=66.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 419 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sV 419 (710)
.++|+||+|||||.||-||+..+...+.+++.+...+. .. .+.. .+........|...+.+ ..|
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el----~~-------~Lk~---~~~~~~~~~~l~~~l~~--~dl 170 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL----LS-------KLKA---AFDEGRLEEKLLRELKK--VDL 170 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHH----HH-------HHHH---HHhcCchHHHHHHHhhc--CCE
Confidence 89999999999999999999988755566666655531 00 0000 00001122344454444 469
Q ss_pred EEEecccc--CCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCcccc
Q 005186 420 VYLENVDK--ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDAR 471 (710)
Q Consensus 420 I~LDEIDK--a~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~~ 471 (710)
++|||+.. ++....+.|+++|..-.- +... |+|||...+..
T Consensus 171 LIiDDlG~~~~~~~~~~~~~q~I~~r~~----------~~~~-~~tsN~~~~~~ 213 (254)
T COG1484 171 LIIDDIGYEPFSQEEADLLFQLISRRYE----------SRSL-IITSNLSFGEW 213 (254)
T ss_pred EEEecccCccCCHHHHHHHHHHHHHHHh----------hccc-eeecCCChHHH
Confidence 99999987 556678888887764321 1233 89999765543
No 240
>PRK09183 transposase/IS protein; Provisional
Probab=97.74 E-value=4.1e-05 Score=80.78 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=60.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 419 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sV 419 (710)
+++|+||+|+|||+||.+|+..+...+..+..+++...-. .+. ...........+...+ ....+
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~-----------~l~---~a~~~~~~~~~~~~~~--~~~dl 167 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL-----------QLS---TAQRQGRYKTTLQRGV--MAPRL 167 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH-----------HHH---HHHHCCcHHHHHHHHh--cCCCE
Confidence 7899999999999999999887644444444444432100 000 0000001111121212 23469
Q ss_pred EEEecccc--CCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 420 VYLENVDK--ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 420 I~LDEIDK--a~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
++|||++. .+...++.|+++++... . +.. +|+|||.....
T Consensus 168 LiiDdlg~~~~~~~~~~~lf~li~~r~-~---------~~s-~iiTsn~~~~~ 209 (259)
T PRK09183 168 LIIDEIGYLPFSQEEANLFFQVIAKRY-E---------KGS-MILTSNLPFGQ 209 (259)
T ss_pred EEEcccccCCCChHHHHHHHHHHHHHH-h---------cCc-EEEecCCCHHH
Confidence 99999986 45567778999986421 1 112 78899986654
No 241
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=7.7e-05 Score=85.99 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=83.8
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
..+.|-...+..+...+...............+++..+|++||+|+|||.+++++|+.- ...++.+++.+.-
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~---~a~~~~i~~peli----- 255 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY---GAFLFLINGPELI----- 255 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh---CceeEecccHHHH-----
Confidence 45667776677766666543221110001122466689999999999999999999987 5667777776411
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH----------HHHHHHHhhHhCCcccCCCCeEe
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV----------HVQNSLSKAIQTGKLPDSYGREV 453 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~----------~vqn~LLq~LE~G~l~d~~Gr~v 453 (710)
..+.|..+ +.+...+.++......++|||||+|.+-| .+-..|+.+|+.-.
T Consensus 256 ------~k~~gEte----~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~--------- 316 (693)
T KOG0730|consen 256 ------SKFPGETE----SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK--------- 316 (693)
T ss_pred ------HhcccchH----HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc---------
Confidence 11222211 11222334444444479999999997653 56677777776321
Q ss_pred ecCceEEEEccCC
Q 005186 454 SVSNAIFVTASSF 466 (710)
Q Consensus 454 d~~n~I~IlTSN~ 466 (710)
.-+++|+|.++|.
T Consensus 317 ~~~~vivl~atnr 329 (693)
T KOG0730|consen 317 PDAKVIVLAATNR 329 (693)
T ss_pred CcCcEEEEEecCC
Confidence 2257889999985
No 242
>PRK06921 hypothetical protein; Provisional
Probab=97.73 E-value=7.3e-05 Score=79.22 Aligned_cols=103 Identities=11% Similarity=0.078 Sum_probs=61.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCC-CcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 417 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs-~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~ 417 (710)
.+++|+||+|+|||+||.+||..+... ...++.+..... +. .+ ...| + . .....+.+. ..
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l---~~--------~l---~~~~-~-~-~~~~~~~~~--~~ 178 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG---FG--------DL---KDDF-D-L-LEAKLNRMK--KV 178 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH---HH--------HH---HHHH-H-H-HHHHHHHhc--CC
Confidence 489999999999999999999988654 455555544320 00 00 0000 0 0 011222232 34
Q ss_pred eEEEEecccc-------CCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 418 SVVYLENVDK-------ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 418 sVI~LDEIDK-------a~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
.||+|||+.. +....+..|+.+++.-. . .+ .-+|+|||.....
T Consensus 179 dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~-~--~~-------k~tIitsn~~~~e 228 (266)
T PRK06921 179 EVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRY-L--NH-------KPILISSELTIDE 228 (266)
T ss_pred CEEEEeccccccCCCccCCHHHHHHHHHHHHHHH-H--CC-------CCEEEECCCCHHH
Confidence 6999999943 55566778888886432 1 11 1268899976544
No 243
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.70 E-value=0.00012 Score=85.16 Aligned_cols=82 Identities=12% Similarity=0.195 Sum_probs=60.4
Q ss_pred CCCCe-EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHH
Q 005186 335 PRRDI-WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL 413 (710)
Q Consensus 335 ~r~~~-~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~ 413 (710)
.||+. .+||+||+|.|||+||+.||+.. +..++.||.+.... +..+...+..++.
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt---------------------~~~v~~kI~~avq 377 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERT---------------------APMVKEKIENAVQ 377 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhc---CceEEEeccccccc---------------------HHHHHHHHHHHHh
Confidence 34543 89999999999999999999987 78889999885211 0111233444443
Q ss_pred --------hCCCeEEEEeccccCCHHHHHHHHhhHh
Q 005186 414 --------KKPLSVVYLENVDKADVHVQNSLSKAIQ 441 (710)
Q Consensus 414 --------~~p~sVI~LDEIDKa~~~vqn~LLq~LE 441 (710)
.+| .-+++||||-+++.+.+.|+.+++
T Consensus 378 ~~s~l~adsrP-~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 378 NHSVLDADSRP-VCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred hccccccCCCc-ceEEEecccCCcHHHHHHHHHHHH
Confidence 233 346799999999999999999997
No 244
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.69 E-value=0.0025 Score=73.69 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=37.5
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
+.-+..-++.|...+.....+.. +...++|.||+|||||+++++||+.+
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~--------~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSS--------PKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCC--------CcceEEEECCCCCCHHHHHHHHHHHh
Confidence 45556667788888876554321 12389999999999999999999998
No 245
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.68 E-value=0.00064 Score=78.69 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=82.6
Q ss_pred hHHHHHHHhcCcccccHHHHHHHHHHHHHHhcC-CCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEe
Q 005186 294 NWKTLFRALTEKIDWQDEAISVISQTIAQRRTG-HEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICA 372 (710)
Q Consensus 294 ~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g-~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~i 372 (710)
.++.|.+.+.-.|+|.++.++.|.-.+.-.... ..+. ..-|.++++||+|-||+||+.|.+.+++++-++ ++.
T Consensus 419 iy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~--~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg----~yT 492 (804)
T KOG0478|consen 419 IYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKS--GRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG----VYT 492 (804)
T ss_pred HHHHHHHhhchhhhcccchhhhHHHHHhcCCccccccc--ccccccceEEEecCCCcCHHHHHHHHHHhCCcc----eee
Confidence 345566677788999999888776555422111 1111 124678899999999999999999999987321 111
Q ss_pred cCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccC
Q 005186 373 DLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 447 (710)
Q Consensus 373 D~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d 447 (710)
..-. .. .+--..|+-.+.. .+.++ .-.+++--...+|-.|||+|||....++.|.++||...+.-
T Consensus 493 SGkG-----sS--avGLTayVtrd~d--tkqlV-LesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSI 557 (804)
T KOG0478|consen 493 SGKG-----SS--AVGLTAYVTKDPD--TRQLV-LESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSI 557 (804)
T ss_pred cCCc-----cc--hhcceeeEEecCc--cceee-eecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhH
Confidence 1110 00 0000011111111 11110 00233334567889999999999999999999999766543
No 246
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00014 Score=81.83 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=60.9
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKP 416 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p 416 (710)
+...+||.||+|+|||.||..||... +-|||.+ ++ |...+|+.+...-.. ...+.+..-+.|
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S---~FPFvKi-iS-------------pe~miG~sEsaKc~~-i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS---DFPFVKI-IS-------------PEDMIGLSESAKCAH-IKKIFEDAYKSP 598 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc---CCCeEEE-eC-------------hHHccCccHHHHHHH-HHHHHHHhhcCc
Confidence 45699999999999999999999865 8899886 22 334566665421111 123344445678
Q ss_pred CeEEEEeccccC------CHHHHHHHHhhH
Q 005186 417 LSVVYLENVDKA------DVHVQNSLSKAI 440 (710)
Q Consensus 417 ~sVI~LDEIDKa------~~~vqn~LLq~L 440 (710)
-+||++|+||.+ .|.+-|.++|+|
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL 628 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQAL 628 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHH
Confidence 999999999975 466666666666
No 247
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.65 E-value=3.6e-05 Score=82.24 Aligned_cols=121 Identities=20% Similarity=0.151 Sum_probs=75.6
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC---CcceEEecCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG---KENFICADLCPQDGEM 381 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs---~~~fI~iD~s~~~~e~ 381 (710)
.|++|++.+..+.+.+ +.. ..-++||+||||+|||....+.|+.+++. ..-+..++.+...+
T Consensus 42 dv~~~~ei~st~~~~~-----~~~--------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg-- 106 (360)
T KOG0990|consen 42 IVIKQEPIWSTENRYS-----GMP--------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG-- 106 (360)
T ss_pred hHhcCCchhhHHHHhc-----cCC--------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC--
Confidence 3888988887776652 111 11289999999999999999999999873 11133334442111
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHH-------hCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELL-------KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~-------~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
.+-... . -.+....+ ...+..|+|||.|.|..++||+|.+++++-.
T Consensus 107 -----------id~vr~---q---i~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t---------- 159 (360)
T KOG0990|consen 107 -----------IDPVRQ---Q---IHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYT---------- 159 (360)
T ss_pred -----------CcchHH---H---HHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhc----------
Confidence 000000 0 00111111 2367789999999999999999999776432
Q ss_pred cCceEEEEccCCCc
Q 005186 455 VSNAIFVTASSFVE 468 (710)
Q Consensus 455 ~~n~I~IlTSN~g~ 468 (710)
.|+.|++-+|...
T Consensus 160 -~n~rF~ii~n~~~ 172 (360)
T KOG0990|consen 160 -ANTRFATISNPPQ 172 (360)
T ss_pred -cceEEEEeccChh
Confidence 2455777677543
No 248
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.00048 Score=74.25 Aligned_cols=104 Identities=11% Similarity=0.007 Sum_probs=63.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccc-c-ccccchhhHHHHHHHh-
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSV-Q-FRGKTLADYVAWELLK- 414 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~-~-f~G~t~~~~L~~al~~- 414 (710)
.+.+||+|+.|.||+.+|+.+++.++..... ++.. + . |. ..+.-.+. + ..+..-...+.+.+..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~----~~~~--~-~---~p---~n~~~~d~~g~~i~vd~Ir~l~~~~~~~ 84 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQIT----NLNE--Q-E---LP---ANIILFDIFDKDLSKSEFLSAINKLYFS 84 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCC----CCCC--C-C---CC---cceEEeccCCCcCCHHHHHHHHHHhccC
Confidence 4699999999999999999999998532110 0000 0 0 00 00000000 0 0111111222333322
Q ss_pred ----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccC
Q 005186 415 ----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASS 465 (710)
Q Consensus 415 ----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN 465 (710)
.++.|++||++|++....+|+|++.||+-- .+++||++|+
T Consensus 85 ~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp-----------~~t~~il~~~ 128 (299)
T PRK07132 85 SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPP-----------KDTYFLLTTK 128 (299)
T ss_pred CcccCCceEEEEecccccCHHHHHHHHHHhhCCC-----------CCeEEEEEeC
Confidence 256799999999999999999999999731 4678888776
No 249
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.00097 Score=74.61 Aligned_cols=128 Identities=6% Similarity=0.041 Sum_probs=76.7
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHc--CCCcceEEecCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY--GGKENFICADLCPQDGE 380 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~--gs~~~fI~iD~s~~~~e 380 (710)
-..+.|.+.-+..+...+..+..+ +..+.+.+.|-||+|||.+...+-..+- +.....++++|..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s---- 215 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS---- 215 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc----
Confidence 466899999888888888877542 3567999999999999987764433332 2222447888885
Q ss_pred CCCCCCcccc---cc-ccccccccccchhhHHHHHHHhC-CCeEEEEeccccCCHHHHHHHHhhHhCC
Q 005186 381 MNNPPKFYHQ---VV-GGDSVQFRGKTLADYVAWELLKK-PLSVVYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 381 ~~~~~sl~~~---~~-~G~~~~f~G~t~~~~L~~al~~~-p~sVI~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
.....+++.. .+ .+......|......+......+ .--|+++||+|.+...-|..|+.+++=-
T Consensus 216 l~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp 283 (529)
T KOG2227|consen 216 LTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP 283 (529)
T ss_pred ccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc
Confidence 3333344311 11 01100111122223333333333 2458999999998876677777666633
No 250
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.50 E-value=0.00029 Score=80.88 Aligned_cols=163 Identities=18% Similarity=0.172 Sum_probs=99.5
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
+...++.|...|.-.|+|.+.++.-|.-.+.-.-.. ...++..-|++.++++.|.||+||+.+.++.+..+-+ ..+.
T Consensus 332 ~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K-~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR--~vYt 408 (764)
T KOG0480|consen 332 DENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHK-SAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR--SVYT 408 (764)
T ss_pred CchHHHHHHHhhCccccchHHHHhhHHHHHhCCccc-cCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc--ceEe
Confidence 445677788888899999998887776555322110 1112445678999999999999999999999887631 1122
Q ss_pred EecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCC-
Q 005186 371 CADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY- 449 (710)
Q Consensus 371 ~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~- 449 (710)
+-..+.- .-+. ...+-.++. | .+. .=++|+--+..+|-.|||+|||+..-|.+|.++||...+.-..
T Consensus 409 sGkaSSa-------AGLT-aaVvkD~es--g-df~-iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKA 476 (764)
T KOG0480|consen 409 SGKASSA-------AGLT-AAVVKDEES--G-DFT-IEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKA 476 (764)
T ss_pred cCccccc-------ccce-EEEEecCCC--C-cee-eecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheec
Confidence 2222211 1011 000101111 0 000 0123344456789999999999999999999999998877654
Q ss_pred CeEeecC-ceEEEEccCCCc
Q 005186 450 GREVSVS-NAIFVTASSFVE 468 (710)
Q Consensus 450 Gr~vd~~-n~I~IlTSN~g~ 468 (710)
|....++ ++=||+++|--.
T Consensus 477 Gv~aTLnARtSIlAAANPv~ 496 (764)
T KOG0480|consen 477 GVVATLNARTSILAAANPVG 496 (764)
T ss_pred ceEEeecchhhhhhhcCCcC
Confidence 4333332 344677777533
No 251
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.47 E-value=0.00016 Score=83.37 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=46.5
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
++.++|+++++..|...+..+..|+..++ ..++|+||+|+|||+||++||+.+-
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~-------~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKK-------QILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCC-------ceEEEecCCCCCchHHHHHHHHHHH
Confidence 44689999999999999988877775442 3999999999999999999999884
No 252
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0031 Score=73.58 Aligned_cols=75 Identities=21% Similarity=0.227 Sum_probs=50.9
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCC-cceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGK-ENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKP 416 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~-~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p 416 (710)
.++++|.||.|+|||.|+++|+..+.... ..+..++|+...+ ....-.-+.....+.+++...|
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~---------------~~~e~iQk~l~~vfse~~~~~P 495 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDG---------------SSLEKIQKFLNNVFSEALWYAP 495 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccc---------------hhHHHHHHHHHHHHHHHHhhCC
Confidence 35899999999999999999999886332 3355688886322 1111011222344666776666
Q ss_pred CeEEEEeccccC
Q 005186 417 LSVVYLENVDKA 428 (710)
Q Consensus 417 ~sVI~LDEIDKa 428 (710)
+||+||++|-+
T Consensus 496 -SiIvLDdld~l 506 (952)
T KOG0735|consen 496 -SIIVLDDLDCL 506 (952)
T ss_pred -cEEEEcchhhh
Confidence 99999998864
No 253
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.42 E-value=0.00095 Score=67.49 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=57.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCC-CcceEEecCCCCCCCCCCCC--CccccccccccccccccchhhHHHHHHHhC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLCPQDGEMNNPP--KFYHQVVGGDSVQFRGKTLADYVAWELLKK 415 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs-~~~fI~iD~s~~~~e~~~~~--sl~~~~~~G~~~~f~G~t~~~~L~~al~~~ 415 (710)
+.++++||+|+|||+++++|+..+... ...++.+.-.. ++...+ .++...-+|.+ ..++.+.+..+++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~---E~~~~~~~~~i~q~~vg~~----~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI---EFVHESKRSLINQREVGLD----TLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc---cccccCccceeeecccCCC----ccCHHHHHHHHhcCC
Confidence 589999999999999999998877422 22333332221 121111 11111011211 123445667777776
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
| .+|++||+- +++....++++..+|.
T Consensus 75 p-d~ii~gEir--d~e~~~~~l~~a~~G~ 100 (198)
T cd01131 75 P-DVILVGEMR--DLETIRLALTAAETGH 100 (198)
T ss_pred c-CEEEEcCCC--CHHHHHHHHHHHHcCC
Confidence 5 699999994 6667777778777653
No 254
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.37 E-value=0.00099 Score=66.97 Aligned_cols=123 Identities=9% Similarity=0.112 Sum_probs=63.8
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCC--CCC-
Q 005186 307 DWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGE--MNN- 383 (710)
Q Consensus 307 iGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e--~~~- 383 (710)
+|.+.-++.|...+... +...++++||.|+|||.|++.+.+.+-......+.++....... +..
T Consensus 2 ~gR~~el~~l~~~l~~~-------------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLESG-------------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh-------------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 57777777776665432 12489999999999999999999877332222333333210000 000
Q ss_pred ------CCCcc------ccccccc----cccccccchhhHHHHHHHhCC-CeEEEEeccccCC------HHHHHHHHhhH
Q 005186 384 ------PPKFY------HQVVGGD----SVQFRGKTLADYVAWELLKKP-LSVVYLENVDKAD------VHVQNSLSKAI 440 (710)
Q Consensus 384 ------~~sl~------~~~~~G~----~~~f~G~t~~~~L~~al~~~p-~sVI~LDEIDKa~------~~vqn~LLq~L 440 (710)
...+. .+...+. .....-......+.+.+.+.. ..||+|||++.+. ..+...|...+
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~ 148 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLL 148 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHH
Confidence 00000 0000000 000000122244555555532 3899999999988 67777888888
Q ss_pred hC
Q 005186 441 QT 442 (710)
Q Consensus 441 E~ 442 (710)
+.
T Consensus 149 ~~ 150 (234)
T PF01637_consen 149 DS 150 (234)
T ss_dssp HH
T ss_pred hh
Confidence 75
No 255
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.35 E-value=0.00022 Score=81.48 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=94.1
Q ss_pred HHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCC
Q 005186 300 RALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG 379 (710)
Q Consensus 300 k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~ 379 (710)
..+--.|+|...++.+|+-++.-..... ...++.-|+++++||+|-||+||+.+.|..++.. ...++.-..+..
T Consensus 445 aSiaPsIyGh~~VK~AvAlaLfGGv~kn-~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s---~RAV~tTGqGAS-- 518 (854)
T KOG0477|consen 445 ASIAPSIYGHEDVKRAVALALFGGVPKN-PGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS---PRAVFTTGQGAS-- 518 (854)
T ss_pred HhhCchhhchHHHHHHHHHHHhcCCccC-CCCCceeccceeEEEecCCCccHHHHHHHHHhcC---cceeEeccCCcc--
Confidence 3344568999988888877775332210 0012334688999999999999999999998866 233332222110
Q ss_pred CCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCC-CeEeec-Cc
Q 005186 380 EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY-GREVSV-SN 457 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~-Gr~vd~-~n 457 (710)
.--+. .++-.++--+-+++. .+|+--+..+|-+|||+|||..+-...+-.+||...+.-+. |-.-.+ ..
T Consensus 519 ----avGLT--a~v~KdPvtrEWTLE---aGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqAr 589 (854)
T KOG0477|consen 519 ----AVGLT--AYVRKDPVTREWTLE---AGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQAR 589 (854)
T ss_pred ----cccee--EEEeeCCccceeeec---cCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhh
Confidence 00000 011111100111211 23344456789999999999999999999999988776553 322222 35
Q ss_pred eEEEEccCCCccc
Q 005186 458 AIFVTASSFVEDA 470 (710)
Q Consensus 458 ~I~IlTSN~g~~~ 470 (710)
+.+|+++|--.+.
T Consensus 590 ctvIAAanPigGR 602 (854)
T KOG0477|consen 590 CTVIAAANPIGGR 602 (854)
T ss_pred hhhheecCCCCCc
Confidence 7899999974443
No 256
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.34 E-value=0.00059 Score=70.95 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=54.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 419 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sV 419 (710)
.-.+.||.|+|||++++.||+.+ +..++.++|++.-+ + ..+...+.++... .+-
T Consensus 34 ~~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~---------------~------~~l~ril~G~~~~--GaW 87 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMD---------------Y------QSLSRILKGLAQS--GAW 87 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS----------------H------HHHHHHHHHHHHH--T-E
T ss_pred CCCCcCCCCCCchhHHHHHHHHh---CCeEEEeccccccc---------------H------HHHHHHHHHHhhc--Cch
Confidence 34589999999999999999998 78999999996211 1 1122334455443 478
Q ss_pred EEEeccccCCHHHHHHHHhhHh
Q 005186 420 VYLENVDKADVHVQNSLSKAIQ 441 (710)
Q Consensus 420 I~LDEIDKa~~~vqn~LLq~LE 441 (710)
+.|||+++++.+++..+.+.+.
T Consensus 88 ~cfdefnrl~~~vLS~i~~~i~ 109 (231)
T PF12774_consen 88 LCFDEFNRLSEEVLSVISQQIQ 109 (231)
T ss_dssp EEEETCCCSSHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999988877766554
No 257
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.26 E-value=0.00054 Score=72.93 Aligned_cols=118 Identities=15% Similarity=0.165 Sum_probs=67.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
.++||+||+|+|||.+++.+-+.+.....-...++++.... ...+. ..+-..-+.-+|..+ +- ......
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt----s~~~q-~~ie~~l~k~~~~~~-gP-----~~~k~l 102 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT----SNQLQ-KIIESKLEKRRGRVY-GP-----PGGKKL 102 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH----HHHHH-HCCCTTECECTTEEE-EE-----ESSSEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC----HHHHH-HHHhhcEEcCCCCCC-CC-----CCCcEE
Confidence 38999999999999999876554533222344567764211 00000 000000000011110 00 012346
Q ss_pred EEEEeccccCCH------HHHHHHHhhHhCCcccCCCC-eEeecCceEEEEccCCC
Q 005186 419 VVYLENVDKADV------HVQNSLSKAIQTGKLPDSYG-REVSVSNAIFVTASSFV 467 (710)
Q Consensus 419 VI~LDEIDKa~~------~vqn~LLq~LE~G~l~d~~G-r~vd~~n~I~IlTSN~g 467 (710)
|+|||++.-..+ .....|.|+|+.|-+.|... .-..+.++.||++.|-+
T Consensus 103 v~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~ 158 (272)
T PF12775_consen 103 VLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPT 158 (272)
T ss_dssp EEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESST
T ss_pred EEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCC
Confidence 999999986543 46789999999988887543 44677889999988753
No 258
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.16 E-value=0.0035 Score=78.10 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=81.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccccccccc-cccc--chhhHHHHHHHhC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQ-FRGK--TLADYVAWELLKK 415 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~-f~G~--t~~~~L~~al~~~ 415 (710)
.++|+.||+.+|||.|...||+.. +..|++||--+... -++|+|.-.. -.|+ -..|.|.+|+++.
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHTd---------lqeYiGTyvTdd~G~lsFkEGvLVeAlR~G 956 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHTD---------LQEYIGTYVTDDDGSLSFKEGVLVEALRRG 956 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHh---CccEEEecCcccch---------HHHHhhceeecCCCceeeehhHHHHHHhcC
Confidence 589999999999999999999998 78899998765221 2355553211 1121 1136789999864
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHhCCc-cc--CCCCeEeecCceEEEEccC
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQTGK-LP--DSYGREVSVSNAIFVTASS 465 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE~G~-l~--d~~Gr~vd~~n~I~IlTSN 465 (710)
--|+|||..-|+.+|..+|-++|++.+ +. ..+-..+.-.+.++.+|-|
T Consensus 957 --yWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQN 1007 (4600)
T COG5271 957 --YWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQN 1007 (4600)
T ss_pred --cEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecC
Confidence 357899999999999999999999775 22 2222344555677888888
No 259
>PF05729 NACHT: NACHT domain
Probab=97.12 E-value=0.0015 Score=62.26 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=48.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCc------ceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKE------NFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL 413 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~------~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~ 413 (710)
.+++.|++|+|||++++.++..+..... -.+.+.+..... ......+. .-+...... ........+...+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~-~~l~~~~~~-~~~~~~~~~~~~~~ 78 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISD-SNNSRSLA-DLLFDQLPE-SIAPIEELLQELLE 78 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhh-ccccchHH-HHHHHhhcc-chhhhHHHHHHHHH
Confidence 6899999999999999999987753321 123344443211 00000110 000000000 00111112344555
Q ss_pred hCCCeEEEEeccccCCHHH
Q 005186 414 KKPLSVVYLENVDKADVHV 432 (710)
Q Consensus 414 ~~p~sVI~LDEIDKa~~~v 432 (710)
..+..+|+||.+|.+....
T Consensus 79 ~~~~~llilDglDE~~~~~ 97 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQD 97 (166)
T ss_pred cCCceEEEEechHhcccch
Confidence 6777899999999988743
No 260
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.0019 Score=63.39 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.7
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
...+++.|+||+|||+++.-||+.|-
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 45899999999999999999999884
No 261
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.04 E-value=0.0039 Score=69.85 Aligned_cols=99 Identities=18% Similarity=0.108 Sum_probs=62.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHH-HcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEI-IYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 417 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~-L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~ 417 (710)
.++++.||+|||||++|.+|+.. .+-++ . |.....+ +.. ......+.+ ...
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG--------~-----f~T~a~L-----f~~--------L~~~~lg~v--~~~ 261 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG--------G-----TITVAKL-----FYN--------ISTRQIGLV--GRW 261 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC--------C-----cCcHHHH-----HHH--------HHHHHHhhh--ccC
Confidence 48999999999999999998876 22111 0 1111111 100 000111222 235
Q ss_pred eEEEEeccccCC----HHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCC
Q 005186 418 SVVYLENVDKAD----VHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFV 467 (710)
Q Consensus 418 sVI~LDEIDKa~----~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g 467 (710)
.+|+|||+..++ .+..+.|...|+.|.|..+. ..--.++=+||.-|+.
T Consensus 262 DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~--~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 262 DVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGD--ETKSSDASFVFLGNVP 313 (449)
T ss_pred CEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccc--eeeeeeeEEEEEcccC
Confidence 799999999853 46889999999999998643 3333556678877764
No 262
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.04 E-value=0.0085 Score=67.62 Aligned_cols=169 Identities=9% Similarity=0.052 Sum_probs=87.2
Q ss_pred cchHhHHHHHHHhcCcccccH---------HHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHH
Q 005186 290 FDLSNWKTLFRALTEKIDWQD---------EAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 290 ~d~~~lk~L~k~L~~~ViGQd---------eAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
++..-.+.+.+.+.+++.|++ ..++.+.+.+.....+...+-.....++..++|+|++|+|||+++..||.
T Consensus 43 V~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 43 VNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455556666666666666554 34445555554432211111011113457999999999999999999998
Q ss_pred HHcCCCcceEEecCCCCCCCCCCCCCcc-ccccccccc--cccccchhhHHHHHH---HhCCCeEEEEeccccCCH--HH
Q 005186 361 IIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSV--QFRGKTLADYVAWEL---LKKPLSVVYLENVDKADV--HV 432 (710)
Q Consensus 361 ~L~gs~~~fI~iD~s~~~~e~~~~~sl~-~~~~~G~~~--~f~G~t~~~~L~~al---~~~p~sVI~LDEIDKa~~--~v 432 (710)
.+-..+..+..+++..+.. .....+- .....|.+. .+.+........+++ +...+.+||+|=....+. ..
T Consensus 123 ~l~~~G~kV~lV~~D~~R~--aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~l 200 (429)
T TIGR01425 123 YYQRKGFKPCLVCADTFRA--GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSL 200 (429)
T ss_pred HHHHCCCCEEEEcCcccch--hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHH
Confidence 7754445566666664210 0000000 000011100 001112222222233 334678999999988765 34
Q ss_pred HHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 433 QNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 433 qn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
...|.++.+.- .-..+++|+.+..|.+.
T Consensus 201 m~El~~i~~~~----------~p~e~lLVlda~~Gq~a 228 (429)
T TIGR01425 201 FEEMLQVAEAI----------QPDNIIFVMDGSIGQAA 228 (429)
T ss_pred HHHHHHHhhhc----------CCcEEEEEeccccChhH
Confidence 45555544311 12357788877766543
No 263
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.02 E-value=0.0037 Score=68.62 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=58.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCC-CcceEEecCCCCCCCCCCCC--CccccccccccccccccchhhHHHHHHHh
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLCPQDGEMNNPP--KFYHQVVGGDSVQFRGKTLADYVAWELLK 414 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs-~~~fI~iD~s~~~~e~~~~~--sl~~~~~~G~~~~f~G~t~~~~L~~al~~ 414 (710)
.+.++++||+|+|||++.++|.+.+... ...++.+.-.. |+...+ .++ ...+.++...++...+..+++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~---E~~~~~~~~~i----~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPI---EYVHRNKRSLI----NQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCCh---hhhccCccceE----EccccCCCCcCHHHHHHHhhcc
Confidence 3589999999999999999999877421 23344332210 111111 111 0011121123455567777776
Q ss_pred CCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 415 KPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 415 ~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
.| .+|++||+- +++.....+++..+|.
T Consensus 195 ~p-d~i~vgEir--d~~~~~~~l~aa~tGh 221 (343)
T TIGR01420 195 DP-DVILIGEMR--DLETVELALTAAETGH 221 (343)
T ss_pred CC-CEEEEeCCC--CHHHHHHHHHHHHcCC
Confidence 65 899999996 7777777777777663
No 264
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00094 Score=64.57 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=67.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
..+|++|-||||||++|..||+.. .|..++++.+-. .+ .-|.||++.| .
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~-----~~~~i~isd~vk----En----~l~~gyDE~y------------------~ 56 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT-----GLEYIEISDLVK----EN----NLYEGYDEEY------------------K 56 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh-----CCceEehhhHHh----hh----cchhcccccc------------------c
Confidence 389999999999999999999876 345567775211 11 1345666653 2
Q ss_pred EEEEeccccCCHHHHHHHHhhHh-CCcccCCCCeE-ee--cCceEEEEccCCCccccccccccccccchHHHHHHH
Q 005186 419 VVYLENVDKADVHVQNSLSKAIQ-TGKLPDSYGRE-VS--VSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRA 490 (710)
Q Consensus 419 VI~LDEIDKa~~~vqn~LLq~LE-~G~l~d~~Gr~-vd--~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~ 490 (710)
-.+||| ..+.+.|-.+|. .|.+.|-+|-. +. .=+.+||++|-...=. .+-..-+|+|.||-.+
T Consensus 57 c~i~DE-----dkv~D~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~~s~LY----~RL~sRgY~e~Ki~eN 123 (176)
T KOG3347|consen 57 CHILDE-----DKVLDELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTPNSVLY----DRLKSRGYSEKKIKEN 123 (176)
T ss_pred CccccH-----HHHHHHHHHHHhcCCcEEeecccCccchhheeEEEEEecCchHHH----HHHHHcCCCHHHHhhh
Confidence 356777 556666666554 45566666511 11 1135688876532111 1123556888887543
No 265
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.93 E-value=0.0029 Score=63.92 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=51.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHH-----
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL----- 413 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~----- 413 (710)
...++.||+|+|||++.+.+++.+...+..++.+-.+.... ..+. ...|.. ..+ +...+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa-----~~L~--~~~~~~----a~T----i~~~l~~~~~~ 83 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAA-----KELR--EKTGIE----AQT----IHSFLYRIPNG 83 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHH-----HHHH--HHHTS-----EEE----HHHHTTEECCE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHH-----HHHH--HhhCcc----hhh----HHHHHhcCCcc
Confidence 37889999999999999999988865545555443331000 0000 000000 001 111111
Q ss_pred -------hCCCeEEEEeccccCCHHHHHHHHhhHhC
Q 005186 414 -------KKPLSVVYLENVDKADVHVQNSLSKAIQT 442 (710)
Q Consensus 414 -------~~p~sVI~LDEIDKa~~~vqn~LLq~LE~ 442 (710)
..+..||++||+..++......|++++..
T Consensus 84 ~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 84 DDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp ECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred cccccccCCcccEEEEecccccCHHHHHHHHHHHHh
Confidence 22347999999999999999999998875
No 266
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.92 E-value=0.0014 Score=68.85 Aligned_cols=88 Identities=17% Similarity=0.130 Sum_probs=47.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHH--HcCCCcceEEecCCCCCCCCCCCCCcc---ccccccccccc----cccchhhH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEI--IYGGKENFICADLCPQDGEMNNPPKFY---HQVVGGDSVQF----RGKTLADY 407 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~--L~gs~~~fI~iD~s~~~~e~~~~~sl~---~~~~~G~~~~f----~G~t~~~~ 407 (710)
....+.++|+.|+|||+||+.+++. .-..-...+-++++.... ...+. ...+....... .-......
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~----~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPS----LEQLLEQILRQLGEPDSSISDPKDIEELQDQ 93 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SC----CHHHHHHHHHHHTCC-STSSCCSSHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccc----ccccccccccccccccccccccccccccccc
Confidence 3469999999999999999999976 322222344456653211 01111 00000000000 01122345
Q ss_pred HHHHHHhCCCeEEEEeccccCC
Q 005186 408 VAWELLKKPLSVVYLENVDKAD 429 (710)
Q Consensus 408 L~~al~~~p~sVI~LDEIDKa~ 429 (710)
+.+.+..+ ..+|+||+|+...
T Consensus 94 l~~~L~~~-~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 94 LRELLKDK-RCLLVLDDVWDEE 114 (287)
T ss_dssp HHHHHCCT-SEEEEEEEE-SHH
T ss_pred chhhhccc-cceeeeeeecccc
Confidence 66666555 7899999998655
No 267
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.79 E-value=0.001 Score=65.83 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=47.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc-----------------CCCcceEEecCCC-CCCCCCCCCCccccccccc---c-c
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY-----------------GGKENFICADLCP-QDGEMNNPPKFYHQVVGGD---S-V 397 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~-----------------gs~~~fI~iD~s~-~~~e~~~~~sl~~~~~~G~---~-~ 397 (710)
.++++|++|+|||++.+.+.+.+- |...-|..+|+.. ....+.... ......+|. . +
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~-~~~~~~vgky~v~~e 79 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVD-FRSGPRVGKYFVDLE 79 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETT-SS-SCECTTCEE-HH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCcccccccc-ccccccCCCEEEcHH
Confidence 489999999999999998888872 1112233444421 000000000 000000110 0 0
Q ss_pred cccccchhhHHHHHHHhCCCeEEEEeccccC---CHHHHHHHHhhHhC
Q 005186 398 QFRGKTLADYVAWELLKKPLSVVYLENVDKA---DVHVQNSLSKAIQT 442 (710)
Q Consensus 398 ~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa---~~~vqn~LLq~LE~ 442 (710)
.|. ......|..++ ....++++|||.+| .+.++.++..+|+.
T Consensus 80 ~fe-~~~~~~L~~~~--~~~~liviDEIG~mEl~~~~F~~~v~~~l~s 124 (168)
T PF03266_consen 80 SFE-EIGLPALRNAL--SSSDLIVIDEIGKMELKSPGFREAVEKLLDS 124 (168)
T ss_dssp HHH-CCCCCCCHHHH--HCCHEEEE---STTCCC-CHHHHHHHHHHCT
T ss_pred HHH-HHHHHHHHhhc--CCCCEEEEeccchhhhcCHHHHHHHHHHHcC
Confidence 110 00012233444 23469999999987 56899999999983
No 268
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.78 E-value=0.0015 Score=59.77 Aligned_cols=32 Identities=31% Similarity=0.301 Sum_probs=25.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
.+++.|++|+|||++|+.||+.+ +.+++.+|-
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeEEEecc
Confidence 47899999999999999999988 444444443
No 269
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.75 E-value=0.012 Score=67.15 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 311 EAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 311 eAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.-|.+|..++..+.. . .+. -+...+|++||+|||||+..+.|+..+
T Consensus 89 kKI~eVk~WL~~~~~-~-~~~----l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAE-F-TPK----LGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHH-h-ccC----CCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 344666666663322 1 110 123489999999999999999999988
No 270
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.0098 Score=62.14 Aligned_cols=108 Identities=8% Similarity=0.012 Sum_probs=67.4
Q ss_pred CeEEEEecCCC-CchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhC-
Q 005186 338 DIWFNFTGPDL-CGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK- 415 (710)
Q Consensus 338 ~~~lLf~GP~G-vGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~- 415 (710)
...+||.|..+ .||..++.-++..++... +++... .+.+-+.|.+--+......+-.....+.+.+...
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~-----i~~~~H----PD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p 85 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNS-----IPLENN----PDYHFIARETSATSNAKNISIEQIRKLQDFLSKTS 85 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccC-----cccCCC----CCEEEEeccccccccCCcccHHHHHHHHHHHhhCc
Confidence 35899999998 999999999999886532 222221 1111111111000000112222233455555443
Q ss_pred ---CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccC
Q 005186 416 ---PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASS 465 (710)
Q Consensus 416 ---p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN 465 (710)
++.|++|+++|+|...+.|+||+.||+-. .+++||++|+
T Consensus 86 ~~g~~KViII~~ae~mt~~AANALLKtLEEPP-----------~~t~fILit~ 127 (263)
T PRK06581 86 AISGYKVAIIYSAELMNLNAANSCLKILEDAP-----------KNSYIFLITS 127 (263)
T ss_pred ccCCcEEEEEechHHhCHHHHHHHHHhhcCCC-----------CCeEEEEEeC
Confidence 46799999999999999999999999843 4677887665
No 271
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.014 Score=65.13 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=64.5
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHc------CCCcceEEecCCCCCCCCCCCCCcc-ccccccccccccccchhhHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIY------GGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAW 410 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~------gs~~~fI~iD~s~~~~e~~~~~sl~-~~~~~G~~~~f~G~t~~~~L~~ 410 (710)
+..++|+||+|+|||+++.-||..+. |....++.+|+-.... ...+. .....|.+. +.... ...+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa----~eQL~~~a~~lgvpv-~~~~~-~~~l~~ 247 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGA----KKQIQTYGDIMGIPV-KAIES-FKDLKE 247 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHH----HHHHHHHhhcCCcce-EeeCc-HHHHHH
Confidence 46899999999999999998887653 2233455555532100 00000 011122211 11111 133444
Q ss_pred HHHh-CCCeEEEEeccccCCHHHH--HHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 411 ELLK-KPLSVVYLENVDKADVHVQ--NSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 411 al~~-~p~sVI~LDEIDKa~~~vq--n~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
++.+ ..+.+|++|.+.+.+.+.. ..|.++++.... + ..+++|+.++.+...
T Consensus 248 ~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~--------~-~e~~LVlsat~~~~~ 301 (388)
T PRK12723 248 EITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR--------D-AEFHLAVSSTTKTSD 301 (388)
T ss_pred HHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC--------C-CeEEEEEcCCCCHHH
Confidence 4433 4578999999999986543 455555553210 0 146788877765433
No 272
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.71 E-value=0.0052 Score=58.00 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=29.0
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
++++||+|+|||+++..++..+-....+.+.+++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 689999999999999999987754456666666653
No 273
>PHA02774 E1; Provisional
Probab=96.68 E-value=0.0063 Score=70.48 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=57.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
..++|+||+|+|||.+|-+|++.+.|.-..| +|... .|. ++.+. . -.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~f--vN~~s---------------------~Fw----Lqpl~----d--~k 481 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISF--VNSKS---------------------HFW----LQPLA----D--AK 481 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEE--EECcc---------------------ccc----cchhc----c--CC
Confidence 4899999999999999999999985432222 33321 111 01111 1 24
Q ss_pred EEEEeccccC-CHHHHHHHHhhHhCCcccC--CCCeEeecCceEEEEccCCC
Q 005186 419 VVYLENVDKA-DVHVQNSLSKAIQTGKLPD--SYGREVSVSNAIFVTASSFV 467 (710)
Q Consensus 419 VI~LDEIDKa-~~~vqn~LLq~LE~G~l~d--~~Gr~vd~~n~I~IlTSN~g 467 (710)
|++|||+-.. -.-+...|..+|+...+.- .+-..+.+...-+|+|||+.
T Consensus 482 i~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d 533 (613)
T PHA02774 482 IALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNID 533 (613)
T ss_pred EEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCC
Confidence 8999999332 2334445666665442221 12234455556689999964
No 274
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.65 E-value=0.0054 Score=70.15 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=94.1
Q ss_pred HHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCC
Q 005186 298 LFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ 377 (710)
Q Consensus 298 L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~ 377 (710)
|.+.|.-.|+|++..+++|.-.+.-..- ..-.+|.+-|+++++|++|.|.|.|+.|.|.+-+.-- . -|.--....
T Consensus 295 La~SLAPSI~GH~~vKkAillLLlGGvE-k~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAp---l-AI~TTGRGS 369 (818)
T KOG0479|consen 295 LARSLAPSIYGHDYVKKAILLLLLGGVE-KNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAP---L-AIATTGRGS 369 (818)
T ss_pred HhhccCcccccHHHHHHHHHHHHhccce-eccCCCceeccceeEEEecCchHHHHHHHHHHHhccc---c-cccccCCCC
Confidence 3444566799999998887655532211 1122455568899999999999999999987765331 0 010000000
Q ss_pred CCCCCCCCCccccccccccccccccchhhHH-HHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCC-CeEeec
Q 005186 378 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYV-AWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY-GREVSV 455 (710)
Q Consensus 378 ~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L-~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~-Gr~vd~ 455 (710)
.+ ..-...+. .+.. .|. .+| +++.--+..+||.|||+|||+.--.-++-.+||.|+++-.. |-...+
T Consensus 370 SG-VGLTAAVT------tD~e-TGE---RRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasL 438 (818)
T KOG0479|consen 370 SG-VGLTAAVT------TDQE-TGE---RRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASL 438 (818)
T ss_pred CC-ccceeEEe------eccc-cch---hhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhh
Confidence 00 00000000 0000 111 111 22333356799999999999999999999999999988653 433333
Q ss_pred C-ceEEEEccCCCcccc
Q 005186 456 S-NAIFVTASSFVEDAR 471 (710)
Q Consensus 456 ~-n~I~IlTSN~g~~~~ 471 (710)
+ +|=+|+++|-..+..
T Consensus 439 NARCSVlAAANPvyG~Y 455 (818)
T KOG0479|consen 439 NARCSVLAAANPVYGQY 455 (818)
T ss_pred ccceeeeeecCcccccc
Confidence 3 477999999766543
No 275
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0095 Score=70.25 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=80.2
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 385 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~ 385 (710)
..+++.-+..++..+...+. +.+...+....+|++|++|||||++.++.|..+ ..+++.+||.+.-.+ .
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~----~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l---g~h~~evdc~el~~~---s- 471 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQ----PSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL---GLHLLEVDCYELVAE---S- 471 (953)
T ss_pred CccchHHHHHHHHHhCcccC----cchhccccceEEEEeCCCCCChHHHHHHHHHHh---CCceEeccHHHHhhc---c-
Confidence 56667666644444432211 111111234599999999999999999999999 789999999863210 0
Q ss_pred CccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC--------HHHHHHHHhhHhCCcccCCCCeEeecCc
Q 005186 386 KFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD--------VHVQNSLSKAIQTGKLPDSYGREVSVSN 457 (710)
Q Consensus 386 sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~--------~~vqn~LLq~LE~G~l~d~~Gr~vd~~n 457 (710)
.++. .+....++...++.+..||||-++|-+. ..++..+-..|..-.+ ..++..
T Consensus 472 -------~~~~-----etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~------~~~~~~ 533 (953)
T KOG0736|consen 472 -------ASHT-----ETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDF------KFSCPP 533 (953)
T ss_pred -------cchh-----HHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccc------cCCCCc
Confidence 0111 1233455666667778999998887542 3344444444441111 223457
Q ss_pred eEEEEccCC
Q 005186 458 AIFVTASSF 466 (710)
Q Consensus 458 ~I~IlTSN~ 466 (710)
+|||.|++-
T Consensus 534 ~ivv~t~~s 542 (953)
T KOG0736|consen 534 VIVVATTSS 542 (953)
T ss_pred eEEEEeccc
Confidence 899998874
No 276
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.60 E-value=0.0037 Score=64.57 Aligned_cols=85 Identities=9% Similarity=0.011 Sum_probs=45.9
Q ss_pred CCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC-CCCCccccccccccccccccchhhHHHHHHHh
Q 005186 336 RRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN-NPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 414 (710)
Q Consensus 336 r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~-~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~ 414 (710)
+.+..+||+|++|+|||++|+.|+. ..-++..|.+...- +. ....+. -.+....-..+.+.+ .++..
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~-----~~~~~~~d~~~~~l-~g~~~~~v~-----~~d~~~~~~~~~d~l-~~~~~ 77 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG-----KTLVLSFDMSSKVL-IGDENVDIA-----DHDDMPPIQAMVEFY-VMQNI 77 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC-----CCEEEeccccchhc-cCCCCCcee-----ecCCCCCHHHHHHHH-HHHHh
Confidence 3456899999999999999998862 23456666653100 00 000010 000000001111222 23332
Q ss_pred --CCCeEEEEeccccCCHHH
Q 005186 415 --KPLSVVYLENVDKADVHV 432 (710)
Q Consensus 415 --~p~sVI~LDEIDKa~~~v 432 (710)
+++.+||||+|+.+-..+
T Consensus 78 ~~~~ydtVVIDsI~~l~~~~ 97 (220)
T TIGR01618 78 QAVKYDNIVIDNISALQNLW 97 (220)
T ss_pred ccccCCEEEEecHHHHHHHH
Confidence 568999999999975544
No 277
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.59 E-value=0.015 Score=72.89 Aligned_cols=112 Identities=16% Similarity=0.102 Sum_probs=82.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccc----cccccccchhhHHHHHHHh
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGD----SVQFRGKTLADYVAWELLK 414 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~----~~~f~G~t~~~~L~~al~~ 414 (710)
.++++.|+.|+||+.|...|+..+ +..+|.|+.++..+ +.-+.|. .+|-. ....|.|++++..
T Consensus 150 ~pI~l~g~~gsgksfLisel~~~~---G~~iV~Ihl~e~TD---------ak~LiGtYts~KpG~f-Ew~~GvL~~avv~ 216 (4600)
T COG5271 150 VPIYLEGGRGSGKSFLISELCDEG---GQRIVEIHLREITD---------AKVLIGTYTSPKPGDF-EWMKGVLIEAVVS 216 (4600)
T ss_pred cceEEecCccccHHHHHHHHHHHh---CceEEEEecccccC---------chheeeeccCCCCCce-eeccchhhhhhhc
Confidence 479999999999999999999988 57899999997432 1222232 11100 1123567777765
Q ss_pred CCCeEEEEeccccCCHHHHHHHHhhHhCCcccC-CCCeEeecCc-eEEEEccC
Q 005186 415 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD-SYGREVSVSN-AIFVTASS 465 (710)
Q Consensus 415 ~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d-~~Gr~vd~~n-~I~IlTSN 465 (710)
. .-|+|..|||++.+|...|+.+|+..++.- ++|.+|-..+ .-+++||.
T Consensus 217 G--~WILf~~Idkap~~vLs~Ll~llekR~L~ipsrGEtV~A~~~Fqif~Tss 267 (4600)
T COG5271 217 G--DWILFKRIDKAPHGVLSYLLTLLEKRRLLIPSRGETVLAHDNFQIFFTSS 267 (4600)
T ss_pred C--cEEEEeecccCchhHHHHHHHHHHhhhhccCCCCceEEecCCEEEEEecc
Confidence 3 478999999999999999999999999876 7898887665 44555544
No 278
>PRK14974 cell division protein FtsY; Provisional
Probab=96.59 E-value=0.012 Score=64.66 Aligned_cols=120 Identities=16% Similarity=0.119 Sum_probs=63.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcc-cccccccc--ccccccchhhHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDS--VQFRGKTLADYVAWELL 413 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~-~~~~~G~~--~~f~G~t~~~~L~~al~ 413 (710)
.+..++|+||+|+|||+++..||..+......++.+++..+.. .....+. .....|.. ..+.|......+..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~--~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA--GAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH--HHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 3569999999999999999999987754444555555543110 0000000 00011110 11112221122333332
Q ss_pred ---hCCCeEEEEeccccCC--HHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCc
Q 005186 414 ---KKPLSVVYLENVDKAD--VHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVE 468 (710)
Q Consensus 414 ---~~p~sVI~LDEIDKa~--~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~ 468 (710)
...+.+|++|....++ ......|.++.+.-. -..+++|+.+..|.
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~----------pd~~iLVl~a~~g~ 266 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK----------PDLVIFVGDALAGN 266 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhC----------CceEEEeeccccch
Confidence 3446799999999985 566667666554211 12356777666543
No 279
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.58 E-value=0.018 Score=61.02 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=59.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccc-cccccchhhHHHHHHHhCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLKKP 416 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~-~f~G~t~~~~L~~al~~~p 416 (710)
.+.++|.||+|+|||++.+++.+.+......++.+.-.. |+.-. +...... ...|.++...+..+++..|
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~---E~~~~------~~~q~~v~~~~~~~~~~~l~~~lR~~P 150 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPV---EYQIP------GINQVQVNEKAGLTFARGLRAILRQDP 150 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCc---eecCC------CceEEEeCCcCCcCHHHHHHHHhccCC
Confidence 358999999999999999999877754344555553321 11110 1000000 0123345566777777665
Q ss_pred CeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 417 LSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 417 ~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
.+|+++||.. ++....++++..+|.
T Consensus 151 -D~i~vgEiR~--~e~a~~~~~aa~tGh 175 (264)
T cd01129 151 -DIIMVGEIRD--AETAEIAVQAALTGH 175 (264)
T ss_pred -CEEEeccCCC--HHHHHHHHHHHHcCC
Confidence 8899999964 455667778888774
No 280
>PRK04296 thymidine kinase; Provisional
Probab=96.57 E-value=0.011 Score=59.47 Aligned_cols=97 Identities=11% Similarity=-0.043 Sum_probs=50.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHH--hCCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL--KKPL 417 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~--~~p~ 417 (710)
..+++||+|+|||+++..++..+.+.....+.+.-+.... +.. ..+. ...|....-........+...+. ...+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~-~~~-~~i~--~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDR-YGE-GKVV--SRIGLSREAIPVSSDTDIFELIEEEGEKI 79 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccc-ccC-CcEe--cCCCCcccceEeCChHHHHHHHHhhCCCC
Confidence 6789999999999999888876655555555553210000 110 1111 11121110000011122333332 3456
Q ss_pred eEEEEeccccCCHHHHHHHHhhH
Q 005186 418 SVVYLENVDKADVHVQNSLSKAI 440 (710)
Q Consensus 418 sVI~LDEIDKa~~~vqn~LLq~L 440 (710)
.||+|||+.-++.+-...|++.+
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l 102 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVL 102 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHH
Confidence 79999999988776333455554
No 281
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.57 E-value=0.0062 Score=64.14 Aligned_cols=96 Identities=20% Similarity=0.208 Sum_probs=57.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 417 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~ 417 (710)
.+.++|.||+|+|||++.++|.+.+......++.+.-.. |+.-.+. ........-.+.++...+..+++..|
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~---E~~l~~~----~~~~~~~~~~~~~~~~~l~~~LR~~p- 198 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPP---ELRLPGP----NQIQIQTRRDEISYEDLLKSALRQDP- 198 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS----S--SCS----SEEEEEEETTTBSHHHHHHHHTTS---
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEecccc---ceeeccc----ceEEEEeecCcccHHHHHHHHhcCCC-
Confidence 359999999999999999999988755435556554321 1111110 00000000012344456777777776
Q ss_pred eEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 418 SVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 418 sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
.+|++.||-.. ++... ++++.+|.
T Consensus 199 D~iiigEiR~~--e~~~~-~~a~~tGh 222 (270)
T PF00437_consen 199 DVIIIGEIRDP--EAAEA-IQAANTGH 222 (270)
T ss_dssp SEEEESCE-SC--HHHHH-HHHHHTT-
T ss_pred CcccccccCCH--hHHHH-HHhhccCC
Confidence 79999999864 66666 88998874
No 282
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.52 E-value=0.0063 Score=78.01 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=77.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccccc-ccccccccc--hhhHHHHHHHhC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGG-DSVQFRGKT--LADYVAWELLKK 415 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G-~~~~f~G~t--~~~~L~~al~~~ 415 (710)
.++||.||+++|||.+++-+|+.. ..++++++--+... -..|+| |...-.|.. -.+.+.+++++
T Consensus 441 ~pillqG~tssGKtsii~~la~~~---g~~~vrinnhehtd---------~qeyig~y~~~~~g~l~freg~LV~Alr~- 507 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARAT---GKNIVRINNHEHTD---------LQEYIGTYVADDNGDLVFREGVLVQALRN- 507 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHh---ccCceehhccccch---------HHHHHHhhhcCCCCCeeeehhHHHHHHHh-
Confidence 489999999999999999999998 67788876553111 235666 322212221 12567777765
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHhC-CcccCCCC-eEeecC-ceEEEEccCC
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQT-GKLPDSYG-REVSVS-NAIFVTASSF 466 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE~-G~l~d~~G-r~vd~~-n~I~IlTSN~ 466 (710)
...+||||+.-|+.++..+|.+++++ .++.-..+ |.|.-. +-++.+|-|.
T Consensus 508 -G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~ 560 (1856)
T KOG1808|consen 508 -GDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNP 560 (1856)
T ss_pred -CCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccC
Confidence 46899999999999999999999987 44443333 444332 3445555553
No 283
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.46 E-value=0.016 Score=64.55 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=59.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcC--CCcceEEecCCCCCCCCC--CCCCcc--ccccccccccccccchhhHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYG--GKENFICADLCPQDGEMN--NPPKFY--HQVVGGDSVQFRGKTLADYVAWEL 412 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~g--s~~~fI~iD~s~~~~e~~--~~~sl~--~~~~~G~~~~f~G~t~~~~L~~al 412 (710)
+.++++||+|+|||++.++|.+.+.. .....+.+.=. -||. ..+.+. .+.-+|.+. .++...+..++
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp---~E~~~~~~~~~~~~~q~evg~~~----~~~~~~l~~aL 222 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDP---IEYILGSPDDLLPPAQSQIGRDV----DSFANGIRLAL 222 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecC---chhccCCCceeecccccccCCCc----cCHHHHHHHhh
Confidence 47899999999999999999987742 22345554222 1121 111111 011122211 13445566777
Q ss_pred HhCCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 413 LKKPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 413 ~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
+..| .+|++.||- +.+....++++.++|.
T Consensus 223 R~~P-D~I~vGEiR--d~et~~~al~aa~TGH 251 (372)
T TIGR02525 223 RRAP-KIIGVGEIR--DLETFQAAVLAGQSGH 251 (372)
T ss_pred ccCC-CEEeeCCCC--CHHHHHHHHHHHhcCC
Confidence 7766 789999997 5577777889999884
No 284
>PRK10867 signal recognition particle protein; Provisional
Probab=96.44 E-value=0.015 Score=65.93 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=50.2
Q ss_pred cchHhHHHHHHHhcCcccccH---------HHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHH
Q 005186 290 FDLSNWKTLFRALTEKIDWQD---------EAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 290 ~d~~~lk~L~k~L~~~ViGQd---------eAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
+...-.+.+.+.+.+++.|++ ..++.+.+.+.....+...+-.....++..++|+|++|+|||+++.-||.
T Consensus 43 V~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 43 VNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHH
Confidence 344455666666665555543 24444444444332211111001113467999999999999999999998
Q ss_pred HHcCC-CcceEEecCCC
Q 005186 361 IIYGG-KENFICADLCP 376 (710)
Q Consensus 361 ~L~gs-~~~fI~iD~s~ 376 (710)
.+... +..+..+++..
T Consensus 123 ~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 123 YLKKKKKKKVLLVAADV 139 (433)
T ss_pred HHHHhcCCcEEEEEccc
Confidence 77544 45555666664
No 285
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.43 E-value=0.011 Score=63.11 Aligned_cols=86 Identities=10% Similarity=0.060 Sum_probs=50.5
Q ss_pred chHhHHHHHHHhcCcccc-----cHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 291 DLSNWKTLFRALTEKIDW-----QDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViG-----QdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
+.+-.+++.+.+.+++.+ .+...+.+.+.+..........-....++...++|+||+|+|||+++..||..+...
T Consensus 20 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 20 GYEVVEKIIEALKKELKGKKVKDAELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 344445555555444333 345556666666655432211100111345689999999999999999999877554
Q ss_pred CcceEEecCCC
Q 005186 366 KENFICADLCP 376 (710)
Q Consensus 366 ~~~fI~iD~s~ 376 (710)
+..+.-+++..
T Consensus 100 g~~V~li~~D~ 110 (272)
T TIGR00064 100 GKSVLLAAGDT 110 (272)
T ss_pred CCEEEEEeCCC
Confidence 45565566653
No 286
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.42 E-value=0.063 Score=58.54 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=31.1
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
+...++|+||+|+|||+++..||..+-..+..+..+++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 4569999999999999999999988764445555566653
No 287
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.41 E-value=0.016 Score=61.74 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=66.4
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 385 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~ 385 (710)
++=-++|+.-|++..+..+. +.+++||.|..|+||+.+++..|-.. +..+..+.++.
T Consensus 10 lVlf~~ai~hi~ri~RvL~~-----------~~Gh~LLvG~~GsGr~sl~rLaa~i~---~~~~~~i~~~~--------- 66 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLSQ-----------PRGHALLVGVGGSGRQSLARLAAFIC---GYEVFQIEITK--------- 66 (268)
T ss_dssp ----HHHHHHHHHHHHHHCS-----------TTEEEEEECTTTSCHHHHHHHHHHHT---TEEEE-TTTST---------
T ss_pred eeeHHHHHHHHHHHHHHHcC-----------CCCCeEEecCCCccHHHHHHHHHHHh---ccceEEEEeeC---------
Confidence 44456777777766655432 45799999999999999999666443 44555554442
Q ss_pred CccccccccccccccccchhhHHHHHHH----hCCCeEEEEeccccCCHHHHHHHHhhHhCCcccC
Q 005186 386 KFYHQVVGGDSVQFRGKTLADYVAWELL----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 447 (710)
Q Consensus 386 sl~~~~~~G~~~~f~G~t~~~~L~~al~----~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d 447 (710)
||.. ..+...|..++. +....|++|++-+-.+..+...+-.+|.+|.+.+
T Consensus 67 --------~y~~----~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~ 120 (268)
T PF12780_consen 67 --------GYSI----KDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPN 120 (268)
T ss_dssp --------TTHH----HHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TT
T ss_pred --------CcCH----HHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCC
Confidence 1211 122233333332 4456789999988888888888888998887664
No 288
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.34 E-value=0.003 Score=61.58 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=38.5
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
+++|.++.++.+...+. .... .....++++|++|+|||.+.+++...+-....-++.+++..
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~~---------~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQS---------GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTSS--------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred CCCCHHHHHHHHHHHHH-HHHc---------CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 36899999999888886 2211 12348999999999999999988887743322367777764
No 289
>PHA00729 NTP-binding motif containing protein
Probab=96.32 E-value=0.0073 Score=62.60 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=22.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++++|+||||||++|.+|++.+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999987
No 290
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.28 E-value=0.023 Score=62.93 Aligned_cols=97 Identities=16% Similarity=0.092 Sum_probs=58.5
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHc---CCCcceEEecCCCCCCCCCC--C---CCccccccccccccccccchhhHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIY---GGKENFICADLCPQDGEMNN--P---PKFYHQVVGGDSVQFRGKTLADYVA 409 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~---gs~~~fI~iD~s~~~~e~~~--~---~sl~~~~~~G~~~~f~G~t~~~~L~ 409 (710)
.+.++++||+|+|||++.++|.+.+. +....++.+.=. -||.. . ..+..+.-++.. ..++...+.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edp---iE~~~~~~~~~~~~v~Q~~v~~~----~~~~~~~l~ 206 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAP---IEFVYDEIETISASVCQSEIPRH----LNNFAAGVR 206 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCC---ceEeccccccccceeeeeecccc----ccCHHHHHH
Confidence 35899999999999999999998873 222233332111 01110 0 001101111110 123445677
Q ss_pred HHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 410 WELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 410 ~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
.+++..| .++++.|+. +.+.....+++..+|-
T Consensus 207 ~aLR~~P-d~i~vGEiR--d~et~~~al~aa~tGh 238 (358)
T TIGR02524 207 NALRRKP-HAILVGEAR--DAETISAALEAALTGH 238 (358)
T ss_pred HHhccCC-CEEeeeeeC--CHHHHHHHHHHHHcCC
Confidence 7888877 488899875 6788888899999884
No 291
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.28 E-value=0.24 Score=58.44 Aligned_cols=144 Identities=13% Similarity=0.223 Sum_probs=83.3
Q ss_pred HhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHc-----CCCcc--eEEec
Q 005186 301 ALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY-----GGKEN--FICAD 373 (710)
Q Consensus 301 ~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~-----gs~~~--fI~iD 373 (710)
...+.+.+.+.-...|-..+...... . . ....+.+.|-||+|||.+++.+-+.|- +.-.+ ++.||
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~-~-~------~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveIN 464 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISD-Q-G------LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEIN 464 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCC-C-C------CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEc
Confidence 34677888888888887777655432 1 1 123899999999999999988877664 22233 44455
Q ss_pred CCCCCCCCCCCCCcc---ccccccccccccccchhhHHHHHHH----hCCCeEEEEeccccCCHHHHHHHHhhHhCCccc
Q 005186 374 LCPQDGEMNNPPKFY---HQVVGGDSVQFRGKTLADYVAWELL----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 446 (710)
Q Consensus 374 ~s~~~~e~~~~~sl~---~~~~~G~~~~f~G~t~~~~L~~al~----~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~ 446 (710)
.-. +...+.+. -..+-|.... +......|...+. +++..||+|||.|-+=..-|..|+.+++=-.+.
T Consensus 465 gm~----l~~~~~~Y~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~ 538 (767)
T KOG1514|consen 465 GLR----LASPREIYEKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLK 538 (767)
T ss_pred cee----ecCHHHHHHHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCC
Confidence 443 22222221 1112222111 0011112222221 244579999999998887888888888743332
Q ss_pred CCCCeEeecCceEEEEccCC
Q 005186 447 DSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 447 d~~Gr~vd~~n~I~IlTSN~ 466 (710)
. +..+||.-+|.
T Consensus 539 ~--------sKLvvi~IaNT 550 (767)
T KOG1514|consen 539 N--------SKLVVIAIANT 550 (767)
T ss_pred C--------CceEEEEeccc
Confidence 2 34556666663
No 292
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.27 E-value=0.023 Score=61.11 Aligned_cols=139 Identities=10% Similarity=0.024 Sum_probs=74.4
Q ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHc------CCCcce
Q 005186 296 KTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY------GGKENF 369 (710)
Q Consensus 296 k~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~------gs~~~f 369 (710)
..+...-..+.||-..|...+...-.... .|.+. ....+|++|+++.|||++++...+.-- +...|+
T Consensus 26 eRI~~i~~~rWIgY~~A~~~L~~L~~Ll~----~P~~~---Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PV 98 (302)
T PF05621_consen 26 ERIAYIRADRWIGYPRAKEALDRLEELLE----YPKRH---RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPV 98 (302)
T ss_pred HHHHHHhcCCeecCHHHHHHHHHHHHHHh----CCccc---CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccE
Confidence 34445557899999998776654433222 22111 124799999999999999998887432 112367
Q ss_pred EEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC---CHHHHHHHHhhHh
Q 005186 370 ICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA---DVHVQNSLSKAIQ 441 (710)
Q Consensus 370 I~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa---~~~vqn~LLq~LE 441 (710)
+.+.|....++..--.++...-...+................++...-.+|+||||+.+ ...-|..++.+|.
T Consensus 99 v~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK 173 (302)
T PF05621_consen 99 VYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK 173 (302)
T ss_pred EEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH
Confidence 77776532110000000110000111111111111233446666767789999999975 3344555555553
No 293
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.035 Score=62.10 Aligned_cols=144 Identities=10% Similarity=0.036 Sum_probs=75.2
Q ss_pred chHhHHHHHHHhcC-----cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 291 DLSNWKTLFRALTE-----KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 291 d~~~lk~L~k~L~~-----~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
+..-...|.+.+.. ......+++..+...+....... ... ......++|+||+|+|||+++..||..+.+.
T Consensus 193 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 193 EQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTE-NVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHhccc-ccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 33444455444432 22334455666665554432211 100 0123589999999999999999999888765
Q ss_pred CcceEEecCCCCCCCCCCCCCcc-ccccccccccccccchhhHHHHHHHh----CCCeEEEEeccccCC--HHHHHHHHh
Q 005186 366 KENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKAD--VHVQNSLSK 438 (710)
Q Consensus 366 ~~~fI~iD~s~~~~e~~~~~sl~-~~~~~G~~~~f~G~t~~~~L~~al~~----~p~sVI~LDEIDKa~--~~vqn~LLq 438 (710)
...+..+++..+.. .....+. .....|.+.. ...+ ...+..++.. ..+.+||+|-....+ ......|.+
T Consensus 269 GkkVglI~aDt~Ri--aAvEQLk~yae~lgipv~-v~~d-~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~ 344 (436)
T PRK11889 269 KKTVGFITTDHSRI--GTVQQLQDYVKTIGFEVI-AVRD-EAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIE 344 (436)
T ss_pred CCcEEEEecCCcch--HHHHHHHHHhhhcCCcEE-ecCC-HHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHH
Confidence 55666666654210 0000010 0001111110 0111 1234444432 246899999998877 445666777
Q ss_pred hHhC
Q 005186 439 AIQT 442 (710)
Q Consensus 439 ~LE~ 442 (710)
+++.
T Consensus 345 ~lk~ 348 (436)
T PRK11889 345 TMGQ 348 (436)
T ss_pred HHhh
Confidence 7653
No 294
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.22 E-value=0.011 Score=61.07 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=59.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCC-----CcceEEecCCCCCCCCCCCCCcccccccccccccccc--------chh
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGG-----KENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGK--------TLA 405 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs-----~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~--------t~~ 405 (710)
.+.|+.||||||||++.|-||+.+-.. ...+..+|-+. ++ .....|..+-.+|. ...
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EI-ag~~~gvpq~~~g~R~dVld~cpk~ 207 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EI-AGCLNGVPQHGRGRRMDVLDPCPKA 207 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hh-hccccCCchhhhhhhhhhcccchHH
Confidence 367999999999999999999987422 23344455542 11 12334444333332 112
Q ss_pred hHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCC
Q 005186 406 DYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 406 ~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
.-+..+++..-.-|+++|||..... ..+++.+++.|
T Consensus 208 ~gmmmaIrsm~PEViIvDEIGt~~d--~~A~~ta~~~G 243 (308)
T COG3854 208 EGMMMAIRSMSPEVIIVDEIGTEED--ALAILTALHAG 243 (308)
T ss_pred HHHHHHHHhcCCcEEEEeccccHHH--HHHHHHHHhcC
Confidence 3356788877678999999987544 34567777755
No 295
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.18 E-value=0.0057 Score=59.17 Aligned_cols=31 Identities=26% Similarity=0.161 Sum_probs=26.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEE
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 371 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~ 371 (710)
...++|+|++|+|||++|++||+.+ +.+++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l---~~~~~d 34 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL---GYDFID 34 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 3489999999999999999999988 445553
No 296
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.18 E-value=0.024 Score=64.14 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=63.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc--CCCcceEEecCCCCCCCCCCCCCcc-ccccccccccccccchhhHHHHHHHh-
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY--GGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAWELLK- 414 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~--gs~~~fI~iD~s~~~~e~~~~~sl~-~~~~~G~~~~f~G~t~~~~L~~al~~- 414 (710)
..++|.||+|+|||+++..||..+. .....+..+++..+.. .....+. .....|.+. +...+ ...+...+.+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~--~a~eqL~~~a~~~~vp~-~~~~~-~~~l~~~l~~~ 297 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI--GAVEQLKTYAKIMGIPV-EVVYD-PKELAKALEQL 297 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH--HHHHHHHHHHHHhCCce-EccCC-HHhHHHHHHHh
Confidence 4899999999999999998887653 3344555666654210 0000000 001111111 00011 1234444443
Q ss_pred CCCeEEEEeccccCC--HHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCc
Q 005186 415 KPLSVVYLENVDKAD--VHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVE 468 (710)
Q Consensus 415 ~p~sVI~LDEIDKa~--~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~ 468 (710)
..+.+||||-....+ ......|.++++.- +.. -.+++|++++.+.
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~------~~~---~~~~LVl~a~~~~ 344 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFS------GEP---IDVYLVLSATTKY 344 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhcc------CCC---CeEEEEEECCCCH
Confidence 357899999876654 45566777777721 011 2456888887654
No 297
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.053 Score=60.35 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.3
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+++|+||+|+|||+++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999999764
No 298
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.12 E-value=0.032 Score=55.74 Aligned_cols=94 Identities=21% Similarity=0.163 Sum_probs=54.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccc------cccccccchhhHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGD------SVQFRGKTLADYVAWEL 412 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~------~~~f~G~t~~~~L~~al 412 (710)
..++|.||+|+|||+++++|...+. .....+.+.-.. ++...+ +...+. ...+...++...+..++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~~---E~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 97 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP-PDERIITIEDTA---ELQLPH----PNWVRLVTRPGNVEGSGEVTMADLLRSAL 97 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEECCcc---ccCCCC----CCEEEEEEecCCCCCCCccCHHHHHHHHh
Confidence 4899999999999999999998774 233444442211 011110 011110 00111123334555566
Q ss_pred HhCCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 413 LKKPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 413 ~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
+.+| .+|++.||-. +++.. +++++.+|.
T Consensus 98 R~~p-d~i~igEir~--~ea~~-~~~a~~tGh 125 (186)
T cd01130 98 RMRP-DRIIVGEVRG--GEALD-LLQAMNTGH 125 (186)
T ss_pred ccCC-CEEEEEccCc--HHHHH-HHHHHhcCC
Confidence 6665 7888999975 45544 677888774
No 299
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.08 E-value=0.011 Score=64.84 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=51.4
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
...++|-++++..|+..++.+..|+..++ ..++|.||.|.||+++++.|-+.|- ..++..+..+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~k-------rIl~L~GPvg~GKSsl~~~Lk~~le--~y~~Y~l~~~ 123 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERK-------RILLLLGPVGGGKSSLAELLKRGLE--EYPIYTLKGC 123 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccc-------eEEEEECCCCCCHHHHHHHHHHHhh--eEEEEEecCC
Confidence 35799999999999999998888776553 3899999999999999999999883 2355555333
No 300
>PRK08118 topology modulation protein; Reviewed
Probab=96.04 E-value=0.0054 Score=60.46 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=27.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
.++++||+|+|||++|+.|++.+ +.+++.+|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l---~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL---NIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCceecch
Confidence 48999999999999999999988 566666653
No 301
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.04 E-value=0.04 Score=59.54 Aligned_cols=94 Identities=18% Similarity=0.118 Sum_probs=56.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCC--CcceEEecCC-CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGG--KENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK 415 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs--~~~fI~iD~s-~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~ 415 (710)
..++++||+|+|||+++++|...+... ...++.+.-. +.. +...+.+. +-...+ .+ ++.+.+..+++.+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~--~~~~~~v~----~~~~~~-~~-~~~~~l~~aLR~~ 204 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQ--CAAPNVVQ----LRTSDD-AI-SMTRLLKATLRLR 204 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhc--CCCCCEEE----EEecCC-CC-CHHHHHHHHhcCC
Confidence 379999999999999999999887431 3445554322 110 10111110 001111 11 4456677777777
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
| .+|++.||-. +++.. +++++.+|-
T Consensus 205 p-D~iivGEiR~--~ea~~-~l~a~~tGh 229 (299)
T TIGR02782 205 P-DRIIVGEVRG--GEALD-LLKAWNTGH 229 (299)
T ss_pred C-CEEEEeccCC--HHHHH-HHHHHHcCC
Confidence 6 6777999975 45544 689998873
No 302
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.03 E-value=0.016 Score=65.55 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=86.3
Q ss_pred HHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCC
Q 005186 298 LFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ 377 (710)
Q Consensus 298 L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~ 377 (710)
+.+.+.-.|+|.++.+++|+-.+.-... -.-+.|-..|+++++||.|.||+.|+.|.+-+-+.. |....--+.
T Consensus 325 is~sIAPSIfG~~DiKkAiaClLFgGsr-K~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs-----PIaVYTSGK- 397 (729)
T KOG0481|consen 325 ISKSIAPSIFGHEDIKKAIACLLFGGSR-KRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS-----PIAVYTSGK- 397 (729)
T ss_pred HhhccCchhcCchhHHHHHHHHhhcCcc-ccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC-----ceEEEecCC-
Confidence 3344556699999998887655532110 011223334678999999999999999988665533 211111110
Q ss_pred CCCCCCC----CCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCC-CCe-
Q 005186 378 DGEMNNP----PKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS-YGR- 451 (710)
Q Consensus 378 ~~e~~~~----~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~-~Gr- 451 (710)
..+. .++. ..-.+.+-...|+ ++--+..+|+.|||+|||.++-.-++-++||...+.-. .|-
T Consensus 398 ---GSSAAGLTASV~-RD~~tReFylEGG--------AMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGIT 465 (729)
T KOG0481|consen 398 ---GSSAAGLTASVI-RDPSTREFYLEGG--------AMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGIT 465 (729)
T ss_pred ---CcccccceeeEE-ecCCcceEEEecc--------eEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcce
Confidence 0000 0111 0000000000111 22234578999999999999999999999998776543 232
Q ss_pred EeecCceEEEEccCCCccc
Q 005186 452 EVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 452 ~vd~~n~I~IlTSN~g~~~ 470 (710)
++--+++=|++++|-.++.
T Consensus 466 T~LNSRtSVLAAANpvfGR 484 (729)
T KOG0481|consen 466 TTLNSRTSVLAAANPVFGR 484 (729)
T ss_pred eeecchhhhhhhcCCcccc
Confidence 2222345567777765543
No 303
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.02 E-value=0.024 Score=66.41 Aligned_cols=96 Identities=23% Similarity=0.190 Sum_probs=61.0
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccc-cccccchhhHHHHHHHhC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLKK 415 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~-~f~G~t~~~~L~~al~~~ 415 (710)
+.+.++++||+|+|||++..++.+.+......++.+.=. -||.- ++...... .-.|.++...+..+++..
T Consensus 315 ~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdp---vE~~~------~~~~q~~v~~~~g~~~~~~l~~~LR~d 385 (564)
T TIGR02538 315 PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDP---VEINL------PGINQVNVNPKIGLTFAAALRSFLRQD 385 (564)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCC---ceecC------CCceEEEeccccCCCHHHHHHHHhccC
Confidence 346899999999999999887777774333444443111 01111 11111111 012445666777777777
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
| .||++.||- +.+.....+++..+|.
T Consensus 386 P-DvI~vGEiR--d~eta~~a~~aa~tGH 411 (564)
T TIGR02538 386 P-DIIMVGEIR--DLETAEIAIKAAQTGH 411 (564)
T ss_pred C-CEEEeCCCC--CHHHHHHHHHHHHcCC
Confidence 6 899999997 6777788888888885
No 304
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.075 Score=59.95 Aligned_cols=122 Identities=11% Similarity=-0.018 Sum_probs=64.7
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH-cCCCcceEEecCCCCCCCCCCCCCcc-ccccccccccccccchhhHHHHHHHhC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII-YGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAWELLKK 415 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L-~gs~~~fI~iD~s~~~~e~~~~~sl~-~~~~~G~~~~f~G~t~~~~L~~al~~~ 415 (710)
...++|.||+|+|||+++..||... ...+.....+++..+... ....+. .....|.+ +........+.+.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~a--A~eQLk~yAe~lgvp--~~~~~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIA--AIEQLKRYADTMGMP--FYPVKDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhh--HHHHHHHHHHhcCCC--eeehHHHHHHHHHHHhC
Confidence 3579999999999999999999644 333344545555542110 000000 00111111 11000123445556556
Q ss_pred CCeEEEEeccccCC--HHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 416 PLSVVYLENVDKAD--VHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 416 p~sVI~LDEIDKa~--~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
.+.+||||=....+ ......|.++++.....+ -..+++|+.++.+...
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~-------~~e~~LVLsAt~~~~~ 348 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKD-------SVENLLVLSSTSSYHH 348 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCC-------CCeEEEEEeCCCCHHH
Confidence 77899999655543 455666666654321111 1246788888776543
No 305
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.98 E-value=0.022 Score=57.94 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=63.2
Q ss_pred CCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhC
Q 005186 336 RRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK 415 (710)
Q Consensus 336 r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~ 415 (710)
+.+..++|.|+-|+|||+..+.|....|... ... .. .+ .....+..+
T Consensus 50 k~d~~lvl~G~QG~GKStf~~~L~~~~~~d~-------~~~------------------~~----~k----d~~~~l~~~ 96 (198)
T PF05272_consen 50 KNDTVLVLVGKQGIGKSTFFRKLGPEYFSDS-------IND------------------FD----DK----DFLEQLQGK 96 (198)
T ss_pred cCceeeeEecCCcccHHHHHHHHhHHhccCc-------ccc------------------CC----Cc----HHHHHHHHh
Confidence 4567999999999999999999976543211 000 00 01 112223332
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHhCCc--ccCCCCeE-eec-CceEEEEccCC
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQTGK--LPDSYGRE-VSV-SNAIFVTASSF 466 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE~G~--l~d~~Gr~-vd~-~n~I~IlTSN~ 466 (710)
-||.|||++.+...-++.|...|-.-. ++..+|+. ..+ +.++||.|||-
T Consensus 97 --~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~ 149 (198)
T PF05272_consen 97 --WIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTND 149 (198)
T ss_pred --HheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCC
Confidence 489999999999888888888885443 33445532 333 56999999995
No 306
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.97 E-value=0.027 Score=62.36 Aligned_cols=137 Identities=11% Similarity=0.146 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC-----CCCCCCC
Q 005186 309 QDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP-----QDGEMNN 383 (710)
Q Consensus 309 QdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~-----~~~e~~~ 383 (710)
|..+...|..++.. +....+++.||.|||||++.++|...+-.....++.+--+. .++ -..
T Consensus 6 Q~~~~~~v~~~~~~-------------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~-G~T 71 (364)
T PF05970_consen 6 QRRVFDTVIEAIEN-------------EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPG-GRT 71 (364)
T ss_pred HHHHHHHHHHHHHc-------------cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccC-Ccc
Confidence 66666666666542 12348999999999999999999998855434443321111 100 122
Q ss_pred CCCcc--ccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEE
Q 005186 384 PPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFV 461 (710)
Q Consensus 384 ~~sl~--~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~I 461 (710)
.|+.+ +-...... .........+.+.++. -.+|++|||-.++..+...+-+.|..=+-. ......|.+..+|
T Consensus 72 ~hs~f~i~~~~~~~~--~~~~~~~~~~~~~l~~--~~~lIiDEism~~~~~l~~i~~~lr~i~~~--~~~~~pFGG~~vi 145 (364)
T PF05970_consen 72 IHSFFGIPINNNEKS--QCKISKNSRLRERLRK--ADVLIIDEISMVSADMLDAIDRRLRDIRKS--KDSDKPFGGKQVI 145 (364)
T ss_pred hHHhcCccccccccc--cccccccchhhhhhhh--heeeecccccchhHHHHHHHHHhhhhhhcc--cchhhhcCcceEE
Confidence 33333 11111000 0000001123333333 359999999999999888887776532211 0013456666677
Q ss_pred EccC
Q 005186 462 TASS 465 (710)
Q Consensus 462 lTSN 465 (710)
+.-.
T Consensus 146 l~GD 149 (364)
T PF05970_consen 146 LFGD 149 (364)
T ss_pred eehh
Confidence 6443
No 307
>PRK10536 hypothetical protein; Provisional
Probab=95.92 E-value=0.033 Score=58.85 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~ 361 (710)
.+++.||.|||||+||.+++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999984
No 308
>PRK06696 uridine kinase; Validated
Probab=95.90 E-value=0.018 Score=59.12 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 310 DEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 310 deAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.+.+.+|+..+..... ..+..+.+.|++|+|||++|+.|++.+-....+.+.+.+..
T Consensus 4 ~~~~~~la~~~~~~~~----------~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Dd 60 (223)
T PRK06696 4 KQLIKELAEHILTLNL----------TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDD 60 (223)
T ss_pred HHHHHHHHHHHHHhCC----------CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccc
Confidence 3456667666654321 13469999999999999999999999854344666666654
No 309
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.90 E-value=0.052 Score=58.76 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=54.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC-CCCCCCCCCCCccccccccc-cccccccchhhHHHHHHHhCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPPKFYHQVVGGD-SVQFRGKTLADYVAWELLKKP 416 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s-~~~~e~~~~~sl~~~~~~G~-~~~f~G~t~~~~L~~al~~~p 416 (710)
..+++.||+|+|||+++++|...+- .....+.++-. +.. +...+.+. -.... ..+....+....+..+++..|
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~-~~~~iv~ied~~El~--~~~~~~~~--l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIP-KDERIITIEDTREIF--LPHPNYVH--LFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCC-ccccEEEEcCccccC--CCCCCEEE--EEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 4899999999999999999998763 23344454311 110 11111110 00000 011111233455666676665
Q ss_pred CeEEEEeccccCCHHHHHHHHhhHhCC
Q 005186 417 LSVVYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 417 ~sVI~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
.+|++||+-. .++.. +++++.+|
T Consensus 220 -d~ii~gE~r~--~e~~~-~l~a~~~g 242 (308)
T TIGR02788 220 -DRIILGELRG--DEAFD-FIRAVNTG 242 (308)
T ss_pred -CeEEEeccCC--HHHHH-HHHHHhcC
Confidence 7889999985 55554 67777766
No 310
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.89 E-value=0.055 Score=59.37 Aligned_cols=96 Identities=21% Similarity=0.187 Sum_probs=56.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC---CCCcc-ccccccccccccccchhhHHHHHHHh
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN---PPKFY-HQVVGGDSVQFRGKTLADYVAWELLK 414 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~---~~sl~-~~~~~G~~~~f~G~t~~~~L~~al~~ 414 (710)
..++++|++|+|||++.++|...+-. ...++.+.=.. |+.- .+.+. .....+ .+-...++.+.+..+++.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~-~~ri~tiEd~~---El~l~~~~n~~~~~~~~~~--~~~~~~~~~~ll~~~LR~ 234 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPA-IERLITVEDAR---EIVLSNHPNRVHLLASKGG--QGRAKVTTQDLIEACLRL 234 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCC-CCeEEEecCCC---ccccccCCCEEEEEecCCC--CCcCcCcHHHHHHHHhcc
Confidence 48999999999999999999987743 34555552221 1110 11110 000000 010012344566777777
Q ss_pred CCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 415 KPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 415 ~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
+| .+|++.||-- .++. .+++++.+|-
T Consensus 235 ~P-D~IivGEiR~--~ea~-~~l~a~~tGh 260 (332)
T PRK13900 235 RP-DRIIVGELRG--AEAF-SFLRAINTGH 260 (332)
T ss_pred CC-CeEEEEecCC--HHHH-HHHHHHHcCC
Confidence 76 6788999984 4555 4688998874
No 311
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=95.88 E-value=0.025 Score=64.02 Aligned_cols=160 Identities=11% Similarity=0.154 Sum_probs=90.6
Q ss_pred hHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 294 NWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 294 ~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
.+..|.+.+.-+|+|.+++++++.-.+.-... ....+|.--|++++++|.|.||+.|+.|.+.|.+.--++ .+-.--
T Consensus 332 ~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd-~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRg--vYTTGr 408 (721)
T KOG0482|consen 332 FYEKLAASIAPEIYGHEDVKKALLLLLVGGVD-KSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRG--VYTTGR 408 (721)
T ss_pred HHHHHHHhhchhhccchHHHHHHHHHhhCCCC-CCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCccc--ceecCC
Confidence 46778888899999999999887655542211 011012223578899999999999999999998865211 000000
Q ss_pred CCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCC-Ce-
Q 005186 374 LCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY-GR- 451 (710)
Q Consensus 374 ~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~-Gr- 451 (710)
.|+ + ..-..++...-.-| +.-.. .+++--+..+|-.|||+|||+..-..++-++||...+.-+. |-
T Consensus 409 GSS--G-VGLTAAVmkDpvTg-EM~LE--------GGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~ 476 (721)
T KOG0482|consen 409 GSS--G-VGLTAAVMKDPVTG-EMVLE--------GGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGIN 476 (721)
T ss_pred CCC--c-cccchhhhcCCCCC-eeEec--------cceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccc
Confidence 000 0 00000000000000 00000 11222344678899999999999999999999987765432 32
Q ss_pred -EeecCceEEEEccCCCcc
Q 005186 452 -EVSVSNAIFVTASSFVED 469 (710)
Q Consensus 452 -~vd~~n~I~IlTSN~g~~ 469 (710)
..+-+ +-|++++|-..+
T Consensus 477 TtLNAR-~sILaAANPayG 494 (721)
T KOG0482|consen 477 TTLNAR-TSILAAANPAYG 494 (721)
T ss_pred cchhhh-HHhhhhcCcccc
Confidence 22222 335666665443
No 312
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.87 E-value=0.036 Score=55.35 Aligned_cols=99 Identities=19% Similarity=0.075 Sum_probs=62.5
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccch--hhHHHHHHHhC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTL--ADYVAWELLKK 415 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~--~~~L~~al~~~ 415 (710)
..++-|+|.+|+|||++|.+|.+.|+........+|.......+. .-.|++..-|-... ++.+...+..
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~--------~dLgFs~edR~eniRRvaevAkll~d- 93 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN--------RDLGFSREDRIENIRRVAEVAKLLAD- 93 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc--------CCCCCChHHHHHHHHHHHHHHHHHHH-
Confidence 458999999999999999999999998888899999884211010 01233332111111 1223334433
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHhCCccc
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQTGKLP 446 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~ 446 (710)
.++|+|==+=.-.....+.-.+.+.+|.|.
T Consensus 94 -aG~iviva~ISP~r~~R~~aR~~~~~~~Fi 123 (197)
T COG0529 94 -AGLIVIVAFISPYREDRQMARELLGEGEFI 123 (197)
T ss_pred -CCeEEEEEeeCccHHHHHHHHHHhCcCceE
Confidence 366766555444556677777888877654
No 313
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.85 E-value=0.051 Score=59.89 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=54.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC-CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 417 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s-~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~ 417 (710)
..++++||+|+|||+++++|...+-. ...++.+.=. +.. +...+.+. -.+.....+..+.++.+.+..+++.+|
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~-~~rivtiEd~~El~--l~~~~~v~-l~~~~~~~~~~~~t~~~ll~~~LR~~p- 237 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPP-QERLITIEDTLELV--IPHENHVR-LLYSKNGAGLGAVTAEHLLQASLRMRP- 237 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCC-CCCEEEECCCcccc--CCCCCEEE-EEeeccccCcCccCHHHHHHHHhcCCC-
Confidence 48999999999999999999987743 3444543222 110 00001000 000000001111233455666777776
Q ss_pred eEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 418 SVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 418 sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
.+|++-|+-- .++.. +++++.+|-
T Consensus 238 D~IivGEiR~--~ea~~-~l~a~~tGh 261 (344)
T PRK13851 238 DRILLGEMRD--DAAWA-YLSEVVSGH 261 (344)
T ss_pred CeEEEEeeCc--HHHHH-HHHHHHhCC
Confidence 6788999974 45554 678887763
No 314
>PRK13947 shikimate kinase; Provisional
Probab=95.84 E-value=0.0088 Score=58.24 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=27.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
++++.|++|+|||++|+.||+.+ +.+|+..|-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEECch
Confidence 69999999999999999999998 666765443
No 315
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.84 E-value=0.0068 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++++||+|+|||++|+.|++.+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 47999999999999999999877
No 316
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.80 E-value=0.018 Score=63.86 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=60.3
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccccccccccc-ccchhhHHHHHHHhC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFR-GKTLADYVAWELLKK 415 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~-G~t~~~~L~~al~~~ 415 (710)
++..+.|+|+.|+|||.|.-+..+.+-.... .++..-.. +.+.| ..+.. .+ +...+..+...+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k--~R~HFh~F---m~~vh----~~l~~----~~~~~~~l~~va~~l~~~ 127 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK--RRVHFHEF---MLDVH----SRLHQ----LRGQDDPLPQVADELAKE 127 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccc--ccccccHH---HHHHH----HHHHH----HhCCCccHHHHHHHHHhc
Confidence 4558999999999999999988887743211 11111100 00000 01100 01 112223444444432
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCcccc
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDAR 471 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~~ 471 (710)
..||+|||++=-+..-.-.|-++++. -+. +++++|+|||...+.+
T Consensus 128 -~~lLcfDEF~V~DiaDAmil~rLf~~-l~~---------~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 128 -SRLLCFDEFQVTDIADAMILKRLFEA-LFK---------RGVVLVATSNRPPEDL 172 (362)
T ss_pred -CCEEEEeeeeccchhHHHHHHHHHHH-HHH---------CCCEEEecCCCChHHH
Confidence 45999999986655433333333331 011 3578999999987764
No 317
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.77 E-value=0.034 Score=63.16 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=51.2
Q ss_pred cchHhHHHHHHHhcCccccc---------HHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHH
Q 005186 290 FDLSNWKTLFRALTEKIDWQ---------DEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 290 ~d~~~lk~L~k~L~~~ViGQ---------deAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
++..-.+.+.+.+.+++.|+ +..++.+.+.+.....+...+. ....++..++|+|++|+|||+++..||.
T Consensus 39 V~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~-~~~~~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 39 VNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLGEETEPL-VLPLKPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhCCCcccc-ccCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 44455556656555555553 3345555555544332211110 0012457999999999999999999998
Q ss_pred HHcCCCcceEEecCCC
Q 005186 361 IIYGGKENFICADLCP 376 (710)
Q Consensus 361 ~L~gs~~~fI~iD~s~ 376 (710)
.+-..+..+..+++..
T Consensus 118 ~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 118 YFKKKGLKVGLVAADT 133 (437)
T ss_pred HHHHcCCeEEEecCCC
Confidence 7754445566666664
No 318
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=95.71 E-value=0.72 Score=52.13 Aligned_cols=80 Identities=8% Similarity=0.165 Sum_probs=54.4
Q ss_pred hHHhcCcceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChH---HHHHHHHHHHHHH
Q 005186 592 QDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNR---VIEDWLEKVLVRG 668 (710)
Q Consensus 592 ~efl~RiD~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR---~le~~IE~vl~~~ 668 (710)
+.|.|...-+|.+.||+.++|. .+...+...+.... +..-.++++.+..++...+...|++ .-+.+|.+.+ ..
T Consensus 318 ~~~~n~~~pvIrL~~l~~eel~-~l~~klr~i~a~~~--~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik~fv-~~ 393 (416)
T PF10923_consen 318 DGFDNLRAPVIRLQPLTPEELL-ELLEKLRDIYAEAY--GYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIKDFV-DV 393 (416)
T ss_pred ccccCccCceecCCCCCHHHHH-HHHHHHHHHHHhhC--CCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHHHHH-HH
Confidence 3456666678999999999988 56666767677654 4447789999999998876665442 2355565555 44
Q ss_pred HHHHHHh
Q 005186 669 FLDAQEK 675 (710)
Q Consensus 669 L~el~~~ 675 (710)
|..+.++
T Consensus 394 Ld~~~q~ 400 (416)
T PF10923_consen 394 LDILEQN 400 (416)
T ss_pred HHHHHHC
Confidence 4444443
No 319
>PRK03839 putative kinase; Provisional
Probab=95.65 E-value=0.01 Score=58.53 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=25.1
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEe
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICA 372 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~i 372 (710)
.++|.|++|+|||++|+.||+.+ +.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~---~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL---GYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEEeh
Confidence 48999999999999999999988 4555443
No 320
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.62 E-value=0.072 Score=61.36 Aligned_cols=96 Identities=19% Similarity=0.160 Sum_probs=59.6
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccc-cccccchhhHHHHHHHhC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLKK 415 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~-~f~G~t~~~~L~~al~~~ 415 (710)
+.+.++++||+|+|||++..++-..+......++.+.=.. ||.- ++...... .-.|.++...+..+++..
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpv---E~~~------~~~~q~~v~~~~g~~f~~~lr~~LR~d 311 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPV---EYQI------EGIGQIQVNPKIGLTFAAGLRAILRQD 311 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCe---eeec------CCCceEEEccccCccHHHHHHHHHhcC
Confidence 3468999999999999999977666643334455442220 0110 01000000 012445666778888877
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
| .||++.||-. .+.....+++..+|.
T Consensus 312 P-DvI~vGEiRd--~eta~~a~~aa~tGH 337 (486)
T TIGR02533 312 P-DIIMVGEIRD--LETAQIAIQASLTGH 337 (486)
T ss_pred C-CEEEEeCCCC--HHHHHHHHHHHHhCC
Confidence 6 8999999864 456667788888885
No 321
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.60 E-value=0.044 Score=62.06 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=51.1
Q ss_pred cchHhHHHHHHHhcCcccccH---------HHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHH
Q 005186 290 FDLSNWKTLFRALTEKIDWQD---------EAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 290 ~d~~~lk~L~k~L~~~ViGQd---------eAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
++..-.+.+.+.+.+++.|++ ..++.+.+.+....-.....-.....++..++|+|++|+|||++|.-||.
T Consensus 42 V~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 42 VNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHH
Confidence 455555666666666655542 24444444444332111110001112457999999999999999999998
Q ss_pred HHc-CCCcceEEecCCC
Q 005186 361 IIY-GGKENFICADLCP 376 (710)
Q Consensus 361 ~L~-gs~~~fI~iD~s~ 376 (710)
.+. ..+..+..++|..
T Consensus 122 ~l~~~~g~kV~lV~~D~ 138 (428)
T TIGR00959 122 YLKKKQGKKVLLVACDL 138 (428)
T ss_pred HHHHhCCCeEEEEeccc
Confidence 865 2345566667764
No 322
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.59 E-value=0.012 Score=55.98 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=25.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
.++++|++|+|||++|+.||+.+ +.+++..|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l---~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL---GLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh---CCCEEEch
Confidence 37899999999999999999988 45555433
No 323
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.59 E-value=0.059 Score=61.50 Aligned_cols=98 Identities=22% Similarity=0.193 Sum_probs=62.7
Q ss_pred CCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccc-cccccchhhHHHHHHHh
Q 005186 336 RRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLK 414 (710)
Q Consensus 336 r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~-~f~G~t~~~~L~~al~~ 414 (710)
+|.|-+|+.||+|+|||++-.++-..+.....+++.+.=. -||. -++...... .-.|-++...|...+++
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDP---VE~~------~~gI~Q~qVN~k~gltfa~~LRa~LRq 326 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDP---VEYQ------LPGINQVQVNPKIGLTFARALRAILRQ 326 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCC---eeee------cCCcceeecccccCCCHHHHHHHHhcc
Confidence 4667999999999999999998888887665555543111 0011 011111111 12355666666666666
Q ss_pred CCCeEEEEeccccCCHHHHHHHHhhHhCCcc
Q 005186 415 KPLSVVYLENVDKADVHVQNSLSKAIQTGKL 445 (710)
Q Consensus 415 ~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l 445 (710)
.| .||++.||. +.+......|+--+|-+
T Consensus 327 DP-DvImVGEIR--D~ETAeiavqAalTGHL 354 (500)
T COG2804 327 DP-DVIMVGEIR--DLETAEIAVQAALTGHL 354 (500)
T ss_pred CC-CeEEEeccC--CHHHHHHHHHHHhcCCe
Confidence 65 899999996 45666777787778864
No 324
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.59 E-value=0.055 Score=59.07 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=56.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc--CCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY--GGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKP 416 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~--gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p 416 (710)
.++++.|++|+|||+++++|+..+. .....++.+.=.. |+.-.+ +..+.+... ...++.+.+..+++.+|
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~---El~~~~----~~~v~~~~~-~~~~~~~ll~~aLR~~P 220 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTG---EIQCAA----ENYVQYHTS-IDVNMTALLKTTLRMRP 220 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCC---ccccCC----CCEEEEecC-CCCCHHHHHHHHhcCCC
Confidence 4899999999999999999998752 2334445443221 121110 011111000 01234456677777666
Q ss_pred CeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 417 LSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 417 ~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
..|++.||-- .++.. +++++.+|-
T Consensus 221 -D~IivGEiR~--~Ea~~-~l~A~~tGh 244 (319)
T PRK13894 221 -DRILVGEVRG--PEALD-LLMAWNTGH 244 (319)
T ss_pred -CEEEEeccCC--HHHHH-HHHHHHcCC
Confidence 6788999975 35544 689998883
No 325
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.56 E-value=0.024 Score=55.74 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=26.7
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+++.||||+|||.++..++......+.+.+.+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 78999999999999998876655455666666543
No 326
>PRK10436 hypothetical protein; Provisional
Probab=95.53 E-value=0.062 Score=61.48 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=58.5
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccccccccc-ccccchhhHHHHHHHhC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKK 415 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~ 415 (710)
+.+.++++||+|+|||++..++-+.+......++.+.=. -||.- ++....... -.|.++...+...++..
T Consensus 217 ~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDP---vE~~l------~gi~Q~~v~~~~g~~f~~~lr~~LR~d 287 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDP---VEIPL------AGINQTQIHPKAGLTFQRVLRALLRQD 287 (462)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCC---ccccC------CCcceEeeCCccCcCHHHHHHHHhcCC
Confidence 456999999999999998877666664433444443111 01110 111111111 12345666677777777
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
| .||++.||-. .+.....+++..+|.
T Consensus 288 P-DvI~vGEIRD--~eta~~al~AA~TGH 313 (462)
T PRK10436 288 P-DVIMVGEIRD--GETAEIAIKAAQTGH 313 (462)
T ss_pred C-CEEEECCCCC--HHHHHHHHHHHHcCC
Confidence 6 8999999864 556667777887885
No 327
>PRK07261 topology modulation protein; Provisional
Probab=95.50 E-value=0.013 Score=57.90 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=26.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
-++++|++|+|||++|+.|++.+ +.+++.+|.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~---~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY---NCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCCeEecCC
Confidence 48899999999999999999876 456665554
No 328
>PRK00625 shikimate kinase; Provisional
Probab=95.45 E-value=0.015 Score=57.91 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=26.1
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
.++|+|.+|+|||++++.||+.+ +.+++.+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l---~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL---SLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEhh
Confidence 58999999999999999999988 55555444
No 329
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.33 E-value=0.056 Score=54.47 Aligned_cols=38 Identities=26% Similarity=0.122 Sum_probs=31.6
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
...+.|+|++|+|||++|++|+..++......+.+|..
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d 61 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD 61 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence 45899999999999999999999887655556777654
No 330
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.33 E-value=0.042 Score=59.54 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
+...++|+|++|+|||++++.||+.+ +.+|+.+|
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L---g~~~id~D 165 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL---GVPFVELN 165 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc---CCCEEeHH
Confidence 44589999999999999999999988 66777544
No 331
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.29 E-value=0.044 Score=58.42 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..+++.||+|+|||++.++|+..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 3799999999999999999998774
No 332
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.26 E-value=0.13 Score=55.36 Aligned_cols=41 Identities=20% Similarity=0.081 Sum_probs=32.4
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCC---CcceEEecCCCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGG---KENFICADLCPQ 377 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs---~~~fI~iD~s~~ 377 (710)
++.++.|.|+=|+|||++.+.+-+.+-.. ...++.+|.-.+
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~ 62 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEY 62 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccC
Confidence 45699999999999999999999988654 344666766543
No 333
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.23 E-value=0.082 Score=56.59 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=45.3
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC--Ccc
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG--KEN 368 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs--~~~ 368 (710)
+.+-.+.|.+.+.+. ...+.+...+...|.......... .........++|+||+|+|||+++..||..+... ...
T Consensus 149 ~~~la~~L~~~l~~~-~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~ 226 (282)
T TIGR03499 149 SPELARELLEKLPER-ADAEDAWRWLREALEKMLPVKPEE-DEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKK 226 (282)
T ss_pred CHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHhccCCcc-ccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCe
Confidence 333444444444432 233445555666555443211111 0001134589999999999999999999766321 244
Q ss_pred eEEecCCC
Q 005186 369 FICADLCP 376 (710)
Q Consensus 369 fI~iD~s~ 376 (710)
+..+++..
T Consensus 227 V~li~~D~ 234 (282)
T TIGR03499 227 VALITTDT 234 (282)
T ss_pred EEEEECCc
Confidence 55555553
No 334
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.23 E-value=0.014 Score=56.43 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEecCCCCchhHHHHHHHHHH
Q 005186 341 FNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L 362 (710)
++++||+|+|||++|+.|++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999987
No 335
>PRK06217 hypothetical protein; Validated
Probab=95.22 E-value=0.017 Score=57.37 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=25.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
.+++.|++|+|||++|++|++.+ +.+++.+|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l---~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL---DIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEEcC
Confidence 48999999999999999999987 45555443
No 336
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.22 E-value=0.016 Score=52.95 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=20.7
Q ss_pred EEEecCCCCchhHHHHHHHHHH
Q 005186 341 FNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L 362 (710)
+++.|++|+|||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 337
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.17 E-value=0.018 Score=54.91 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.6
Q ss_pred EEEecCCCCchhHHHHHHHHHH
Q 005186 341 FNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L 362 (710)
++|.|++|+|||++|+.|++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999975
No 338
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.17 E-value=0.13 Score=65.36 Aligned_cols=49 Identities=22% Similarity=0.161 Sum_probs=36.8
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
+.++|.++.++.|...+.. .. .....+.++|+.|+|||+||++++..+.
T Consensus 184 ~~~vG~~~~l~~l~~lL~l-----~~------~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHL-----ES------EEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred ccccchHHHHHHHHHHHcc-----cc------CceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 4578999888877665531 11 1234899999999999999999988763
No 339
>PF13479 AAA_24: AAA domain
Probab=95.11 E-value=0.046 Score=55.92 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.0
Q ss_pred CeEEEEecCCCCchhHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIAL 358 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraL 358 (710)
...++++|++|+|||++|..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 468999999999999998877
No 340
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.10 E-value=0.019 Score=56.60 Aligned_cols=32 Identities=16% Similarity=0.056 Sum_probs=26.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.+++.||||+|||++|+.||+.+ .+++++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~-----~~~~is~~d 32 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF-----GFTHLSAGD 32 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-----CCeEEECCh
Confidence 37899999999999999999977 356667663
No 341
>PRK13949 shikimate kinase; Provisional
Probab=95.01 E-value=0.021 Score=56.38 Aligned_cols=31 Identities=29% Similarity=0.253 Sum_probs=25.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
.++|+|++|+|||++++.||+.+ +.+++..|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l---~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL---GLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCCeeccc
Confidence 58999999999999999999988 44554433
No 342
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.01 E-value=0.03 Score=55.08 Aligned_cols=39 Identities=31% Similarity=0.119 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+...++|.|++|+|||++|++|++.+.......+.+|..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d 44 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD 44 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH
Confidence 345899999999999999999999885433445555543
No 343
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.00 E-value=0.033 Score=46.68 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEecCCCCchhHHHHHHHHHH
Q 005186 341 FNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L 362 (710)
+.+.|++|+|||+++++|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 344
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.00 E-value=0.023 Score=53.41 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=24.7
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
+++.|++|+|||++|+.||+.+ +.+++..|
T Consensus 2 I~i~G~~GsGKst~a~~la~~~---~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL---GLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCceeccc
Confidence 6899999999999999999987 45554433
No 345
>PRK13948 shikimate kinase; Provisional
Probab=94.99 E-value=0.028 Score=56.47 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=29.0
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
+...++|.|..|+|||++++.||+.+ +.+|+..|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l---g~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL---MLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc---CCCEEECC
Confidence 45689999999999999999999988 56777554
No 346
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.96 E-value=0.12 Score=56.57 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=54.1
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc--CCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY--GGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 417 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~--gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~ 417 (710)
.++++|++|+|||+++++|...+. .....++.+.=.. |+.-.+ +..+..... .+.++.+.+..+++.+|
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~---El~~~~----~n~v~l~~~-~~~~~~~lv~~aLR~~P- 216 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTA---EIQCAA----ENAVALHTS-DTVDMARLLKSTMRLRP- 216 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCc---ccccCC----CCEEEeccC-CCcCHHHHHHHHhCCCC-
Confidence 799999999999999999998873 1233444443111 111000 000000000 01234455667777666
Q ss_pred eEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 418 SVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 418 sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
.+|++-||-- .++. .+++++.+|-
T Consensus 217 D~IivGEiRg--~ea~-~~l~a~~tGh 240 (323)
T PRK13833 217 DRIIVGEVRD--GAAL-TLLKAWNTGH 240 (323)
T ss_pred CEEEEeecCC--HHHH-HHHHHHcCCC
Confidence 6777999974 3555 4688888773
No 347
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.94 E-value=0.019 Score=57.07 Aligned_cols=31 Identities=32% Similarity=0.286 Sum_probs=26.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
++.|+|+.|+|||++.++||+.| +.+|+-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L---~~~F~D~D 34 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL---NLPFIDTD 34 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHc---CCCcccch
Confidence 79999999999999999999999 56665433
No 348
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.93 E-value=0.1 Score=58.67 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=49.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhC--CC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK--PL 417 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~--p~ 417 (710)
.+++.||-+||||++++.|.+.+.. ..+.++..+... . . ....+.+....... ..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~---~~iy~~~~d~~~---------------~--~---~~l~d~~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE---EIIYINFDDLRL---------------D--R---IELLDLLRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc---ceEEEEecchhc---------------c--h---hhHHHHHHHHHHhhccCC
Confidence 8999999999999999888887732 255555443110 0 0 01111222222112 33
Q ss_pred eEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 418 SVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 418 sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
..||||||..++. -+..|..+.+.|.
T Consensus 96 ~yifLDEIq~v~~-W~~~lk~l~d~~~ 121 (398)
T COG1373 96 SYIFLDEIQNVPD-WERALKYLYDRGN 121 (398)
T ss_pred ceEEEecccCchh-HHHHHHHHHcccc
Confidence 6899999998865 6666666667665
No 349
>PHA01747 putative ATP-dependent protease
Probab=94.92 E-value=0.08 Score=58.39 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=62.2
Q ss_pred CCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhC
Q 005186 336 RRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK 415 (710)
Q Consensus 336 r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~ 415 (710)
++..+++=.||.|||||++-+.|.+.. +... .+. -.. .+.++..... + -.+.+.
T Consensus 188 ~~NyNliELgPRGTGKS~~f~eis~fs-----p~~i--SGG----~~T-----vA~LFyN~~t--~------~~GLVg-- 241 (425)
T PHA01747 188 KRPVHIIELSNRGTGKTTTFVILQELF-----NFRY--YTE----PPT-----YANLVYDAKT--N------ALGLVF-- 241 (425)
T ss_pred CCCeeEEEecCCCCChhhHHHHhhhcC-----Ccee--eCC----CCc-----hHHheEecCC--C------ceeEEe--
Confidence 355799999999999999999886532 1111 110 000 1111111000 0 000111
Q ss_pred CCeEEEEeccccCC----HHHHHHHHhhHhCCcccCCCCeEee----cCceEEEEccCCC
Q 005186 416 PLSVVYLENVDKAD----VHVQNSLSKAIQTGKLPDSYGREVS----VSNAIFVTASSFV 467 (710)
Q Consensus 416 p~sVI~LDEIDKa~----~~vqn~LLq~LE~G~l~d~~Gr~vd----~~n~I~IlTSN~g 467 (710)
-+.+|+||||.... .++.+.|...|+.|.+..+.+...+ -+++=+|+.-|..
T Consensus 242 ~~D~VaFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin 301 (425)
T PHA01747 242 LSNGLIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPD 301 (425)
T ss_pred eccEEEEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCC
Confidence 13589999999864 5799999999999999876542221 1245577777763
No 350
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.89 E-value=0.024 Score=55.84 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=27.1
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
.++|.|++|+|||++|+.|++.+ ..++++++..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~---~~~~~~~~~D 36 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVL---AEPWLHFGVD 36 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---CCCccccCcc
Confidence 79999999999999999999987 3455555544
No 351
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.84 E-value=0.033 Score=54.62 Aligned_cols=38 Identities=21% Similarity=0.134 Sum_probs=34.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
..+.|+|.+|+|||+||++|.+.|+....+.+.+|...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~ 40 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDN 40 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcc
Confidence 48999999999999999999999998888899999885
No 352
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.82 E-value=0.087 Score=53.96 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=18.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
.+.+.||.|||||.||-+.|-.+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v 44 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELV 44 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 789999999999999998885443
No 353
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.76 E-value=0.098 Score=52.12 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=27.5
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
+.+.|++|+|||++|+.|++.+-....+...+.+..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Dd 37 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhh
Confidence 689999999999999999998843334455555553
No 354
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=94.76 E-value=0.21 Score=54.97 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=56.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC-CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 417 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s-~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~ 417 (710)
..+++.|++|+|||++.++|...+.. ....+.+.=. +.. ....+-+.-..-....++--+.++.+.+..+++.+|
T Consensus 179 ~~ili~G~tGsGKTTll~al~~~i~~-~~riv~iEd~~El~--~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~P- 254 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLSALLALVAP-DERIVLVEDAAELR--PDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRP- 254 (340)
T ss_pred CeEEEECCCCCCHHHHHHHHHccCCC-CCcEEEECCcceec--CCCCCeeeEEeccccccCcCccCHHHHHHHHhccCC-
Confidence 48999999999999999999887743 3344444222 211 001111000000000001011244566777888777
Q ss_pred eEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 418 SVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 418 sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
.+|++-||- .+++.. +++++.+|.
T Consensus 255 D~IivGEiR--g~Ea~~-~l~a~~tGh 278 (340)
T TIGR03819 255 DRIVVGEVR--GAEVVD-LLAALNTGH 278 (340)
T ss_pred CeEEEeCcC--cHHHHH-HHHHHHcCC
Confidence 578899997 456654 589998884
No 355
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.72 E-value=0.034 Score=54.28 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=25.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
.++|+|++|+|||++|+.||+.+ +.+|+..|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l---g~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL---GYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEcc
Confidence 58899999999999999999988 45665443
No 356
>PRK14532 adenylate kinase; Provisional
Probab=94.72 E-value=0.03 Score=55.59 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=25.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
.++|.||||+|||++|+.||+.+ .+..++++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~-----g~~~is~~ 32 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER-----GMVQLSTG 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCeEEeCc
Confidence 48999999999999999999876 35566665
No 357
>PRK06762 hypothetical protein; Provisional
Probab=94.70 E-value=0.04 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=22.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|+|++|+|||++|+.|++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378899999999999999999987
No 358
>PRK06547 hypothetical protein; Provisional
Probab=94.69 E-value=0.036 Score=55.07 Aligned_cols=25 Identities=32% Similarity=0.185 Sum_probs=22.7
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...+++.|++|+|||++|+.|++.+
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588889999999999999999986
No 359
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.68 E-value=0.056 Score=51.65 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=22.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.|+.|+|||++++.|++.+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 489999999999999999999987
No 360
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.67 E-value=0.13 Score=62.09 Aligned_cols=92 Identities=17% Similarity=0.118 Sum_probs=50.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCC--cceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHH-------H
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGK--ENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVA-------W 410 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~--~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~-------~ 410 (710)
.+++.|++|||||+++++|.+.+.... ..++.+--+... ...+ .+..|... .|....+. .
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~A-----A~~L--~e~~g~~a----~Tih~lL~~~~~~~~~ 408 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRA-----AKRL--GEVTGLTA----STIHRLLGYGPDTFRH 408 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHH-----HHHH--HHhcCCcc----ccHHHHhhccCCccch
Confidence 799999999999999999988775332 222221111000 0000 00011110 11100000 0
Q ss_pred HHHh--CCCeEEEEeccccCCHHHHHHHHhhHhC
Q 005186 411 ELLK--KPLSVVYLENVDKADVHVQNSLSKAIQT 442 (710)
Q Consensus 411 al~~--~p~sVI~LDEIDKa~~~vqn~LLq~LE~ 442 (710)
.... .+..+|++||+-.++......|++++..
T Consensus 409 ~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~ 442 (720)
T TIGR01448 409 NHLEDPIDCDLLIVDESSMMDTWLALSLLAALPD 442 (720)
T ss_pred hhhhccccCCEEEEeccccCCHHHHHHHHHhCCC
Confidence 0011 2457999999999999999999887653
No 361
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.66 E-value=0.059 Score=55.61 Aligned_cols=37 Identities=8% Similarity=-0.045 Sum_probs=28.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+++.|++|+|||.++..++......+.+.+.+++.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4899999999999999999875543445666666664
No 362
>PRK14530 adenylate kinase; Provisional
Probab=94.54 E-value=0.037 Score=56.43 Aligned_cols=23 Identities=26% Similarity=0.201 Sum_probs=21.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.||||+|||++|+.||+.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 363
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.54 E-value=0.03 Score=56.01 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=25.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
.++|.||||+||+++|+.||+.+ ++.++|-.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~-----~i~hlstg 32 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL-----GLPHLDTG 32 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-----CCcEEcHh
Confidence 48999999999999999999985 55666544
No 364
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=94.52 E-value=0.058 Score=52.10 Aligned_cols=45 Identities=27% Similarity=0.348 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC
Q 005186 308 WQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG 364 (710)
Q Consensus 308 GQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g 364 (710)
.|.+|+..+...+... . ....++|.+|+|+|||.++-.++..++.
T Consensus 7 ~Q~~ai~~i~~~~~~~-----~-------~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 7 YQQEAIARIINSLENK-----K-------EERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHHTT-----S-------GCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc-----C-------CCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 5888888887777643 0 1248999999999999999976666654
No 365
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.49 E-value=0.048 Score=55.19 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=28.2
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
....+.+.|++|+|||+|+++|++.+. ...+..+++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D 41 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQD 41 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCC
Confidence 356899999999999999999999872 2234444444
No 366
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.48 E-value=0.036 Score=54.86 Aligned_cols=30 Identities=23% Similarity=0.154 Sum_probs=24.8
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
++++||+|+|||++|+.||+.+ .+..++++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~-----~~~~i~~~ 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-----GLPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCeEEECc
Confidence 7899999999999999999976 34555555
No 367
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.48 E-value=0.039 Score=54.59 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=26.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
.++|.|++|+|||++++.||+.+ ..+++..|.
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l---~~~~vd~D~ 37 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL---NMEFYDSDQ 37 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc---CCcEEECCc
Confidence 69999999999999999999987 455655554
No 368
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.38 E-value=0.12 Score=56.93 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=22.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+++.|.+|+|||.||-.|+..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 79999999999999999999988
No 369
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.36 E-value=0.14 Score=49.31 Aligned_cols=98 Identities=19% Similarity=0.159 Sum_probs=55.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccccccccccccc-chhhHHHHHHHhCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGK-TLADYVAWELLKKPL 417 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~-t~~~~L~~al~~~p~ 417 (710)
..+.+.||+|+|||++.++|+..+.- ..--+.++.... ...........+++...+.++ ...-.+..++...|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~~----~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~- 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKDI----AKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNP- 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEc----ccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCC-
Confidence 38899999999999999999976532 122233333210 000000001112221112222 11123555555554
Q ss_pred eEEEEeccc-cCCHHHHHHHHhhHhC
Q 005186 418 SVVYLENVD-KADVHVQNSLSKAIQT 442 (710)
Q Consensus 418 sVI~LDEID-Ka~~~vqn~LLq~LE~ 442 (710)
.+++|||.. .++......|.++|..
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 899999998 5788888888888873
No 370
>PRK13764 ATPase; Provisional
Probab=94.34 E-value=0.18 Score=59.43 Aligned_cols=26 Identities=31% Similarity=0.209 Sum_probs=23.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
.++++||||+|||+++++|++.+...
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i~~~ 284 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFYADM 284 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 69999999999999999999988543
No 371
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.31 E-value=0.14 Score=51.23 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=53.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccc-cchhhHHHHHHHhCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRG-KTLADYVAWELLKKPL 417 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G-~t~~~~L~~al~~~p~ 417 (710)
..+.+.||+|+|||+|.++|+-.+.-... -|.++... + +|.-....+.| ....=.+..++...|
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~----------i---~~~~q~~~LSgGq~qrv~laral~~~p- 90 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGD-NDEWDGIT----------P---VYKPQYIDLSGGELQRVAIAAALLRNA- 90 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCc-EEEECCEE----------E---EEEcccCCCCHHHHHHHHHHHHHhcCC-
Confidence 48999999999999999999976532222 23333210 0 00000000111 111123566666665
Q ss_pred eEEEEeccc-cCCHHHHHHHHhhHhC
Q 005186 418 SVVYLENVD-KADVHVQNSLSKAIQT 442 (710)
Q Consensus 418 sVI~LDEID-Ka~~~vqn~LLq~LE~ 442 (710)
.+++|||-- .+++..+..+++++.+
T Consensus 91 ~lllLDEPts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 91 TFYLFDEPSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHH
Confidence 899999987 5788888888887763
No 372
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.24 E-value=0.047 Score=52.66 Aligned_cols=36 Identities=28% Similarity=0.196 Sum_probs=27.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
.++|+|++|+|||++|+.|+..+.......+.+|..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d 36 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGD 36 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 378999999999999999999886433344555543
No 373
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.24 E-value=0.12 Score=50.44 Aligned_cols=99 Identities=14% Similarity=0.030 Sum_probs=57.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccch-hhHHHHHHHhCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTL-ADYVAWELLKKPL 417 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~-~~~L~~al~~~p~ 417 (710)
-.+.|.||+|+|||+|.++|+-.+.-... -+.++...... .. .... ....+|+...+.|+.. .=.+..++-..|
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~v~~~g~~~~~-~~-~~~~-~~~~i~~~~qLS~G~~qrl~laral~~~p- 101 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSG-EILVDGKEVSF-AS-PRDA-RRAGIAMVYQLSVGERQMVEIARALARNA- 101 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEECCc-CC-HHHH-HhcCeEEEEecCHHHHHHHHHHHHHhcCC-
Confidence 38999999999999999999976532222 23343321100 00 0000 0112333222222211 123566666665
Q ss_pred eEEEEeccc-cCCHHHHHHHHhhHhC
Q 005186 418 SVVYLENVD-KADVHVQNSLSKAIQT 442 (710)
Q Consensus 418 sVI~LDEID-Ka~~~vqn~LLq~LE~ 442 (710)
.|++|||-- .+++.....+.++|.+
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 899999987 5788888888888863
No 374
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.22 E-value=0.049 Score=54.56 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.8
Q ss_pred EEEecCCCCchhHHHHHHHHHH
Q 005186 341 FNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L 362 (710)
+.+.||+|+|||++|++|+..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 375
>PRK08233 hypothetical protein; Provisional
Probab=94.21 E-value=0.057 Score=52.75 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=27.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+.+.|++|+|||++|+.|++.+- ...++.+|.-
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCE
Confidence 4788999999999999999999873 2345555554
No 376
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.19 E-value=0.084 Score=55.94 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=58.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC--C----CCcc------ccccccccccccccchhh-
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN--P----PKFY------HQVVGGDSVQFRGKTLAD- 406 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~--~----~sl~------~~~~~G~~~~f~G~t~~~- 406 (710)
.+-+.|++|||||+++|+|....--.... |.++...... +.. . .++. +..+.-|+..|.|+....
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt~G~-i~f~g~~i~~-~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi 118 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGKDITK-LSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRI 118 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCCCce-EEEcCcchhh-cchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhH
Confidence 89999999999999999999877422222 3333221000 000 0 0000 111222344444543222
Q ss_pred HHHHHHHhCCCeEEEEeccccC-CHHHHHHHHhhHhC
Q 005186 407 YVAWELLKKPLSVVYLENVDKA-DVHVQNSLSKAIQT 442 (710)
Q Consensus 407 ~L~~al~~~p~sVI~LDEIDKa-~~~vqn~LLq~LE~ 442 (710)
.++.++.-+| .+|+.||...| +..+|..++.+|.+
T Consensus 119 ~IARALal~P-~liV~DEpvSaLDvSiqaqIlnLL~d 154 (268)
T COG4608 119 GIARALALNP-KLIVADEPVSALDVSVQAQILNLLKD 154 (268)
T ss_pred HHHHHHhhCC-cEEEecCchhhcchhHHHHHHHHHHH
Confidence 2677887777 78889998764 77788888887764
No 377
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.18 E-value=0.069 Score=52.44 Aligned_cols=37 Identities=32% Similarity=0.180 Sum_probs=29.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
-.+.|.|++|+|||++|+.|+..+...+..++.+|..
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 3899999999999999999999885444445666664
No 378
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.17 E-value=0.23 Score=53.32 Aligned_cols=115 Identities=12% Similarity=0.091 Sum_probs=69.0
Q ss_pred HHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 295 WKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 295 lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
++...+.+.+.+.|....+-.++.++.......-. .....+-|+|.+++|||+++++.+ .++|....++. .+
T Consensus 156 le~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~l~------~~~~~~hl~G~Ss~GKTt~~~~a~-Sv~G~p~~l~~-sw 227 (286)
T PF06048_consen 156 LEEWQEMVAALAKGNPRLMLALCAAFAAPLLSLLG------VEGFGFHLYGQSSSGKTTALQLAA-SVWGNPDGLIR-SW 227 (286)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhC------CCceEEEEEeCCCCCHHHHHHHhh-hhCcCchhhhh-cc
Confidence 55566666666777776655555555433221111 134689999999999998888777 46665441111 00
Q ss_pred CCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 375 CPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 375 s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
. .|.. .|..........+++|||+..+++.-...+.-.|-+|+
T Consensus 228 ~--------------------------~T~n-~le~~a~~~nd~~l~lDE~~~~~~~~~~~~iY~l~nG~ 270 (286)
T PF06048_consen 228 N--------------------------STDN-GLERTAAAHNDLPLVLDELSQADPKDVGSIIYMLANGQ 270 (286)
T ss_pred h--------------------------hhHH-HHHHHHHHcCCcceEehhccccchhHHHHHHHHHhCCC
Confidence 0 1111 23344444456789999999999876666666665553
No 379
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=94.17 E-value=0.054 Score=55.71 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=26.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
.+++.||||+|||.+|-+||+.. +.++|..|--
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~---g~pvI~~Dri 35 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKT---GAPVISLDRI 35 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH-----EEEEE-SG
T ss_pred EEEEECCCCCChhHHHHHHHHHh---CCCEEEecce
Confidence 68999999999999999999998 6788887755
No 380
>PLN02200 adenylate kinase family protein
Probab=94.13 E-value=0.06 Score=56.11 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=28.9
Q ss_pred CCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 336 RRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 336 r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
+.+..++++|+||+|||++|+.||+.+ .+.+++++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~-----g~~his~gd 76 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETF-----GFKHLSAGD 76 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh-----CCeEEEccH
Confidence 345689999999999999999999876 345666653
No 381
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.06 E-value=0.35 Score=54.07 Aligned_cols=100 Identities=7% Similarity=-0.012 Sum_probs=54.3
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcc-ccccccccccccccchhhHHHHHHHh-
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAWELLK- 414 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~-~~~~~G~~~~f~G~t~~~~L~~al~~- 414 (710)
+...++|+||+|+|||+++..||..+...+.....+++..+.. .....+. .....|... +...+ ...+..++..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~--gAveQLk~yae~lgvpv-~~~~d-p~dL~~al~~l 280 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS--GAVEQFQGYADKLDVEL-IVATS-PAELEEAVQYM 280 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc--cHHHHHHHHhhcCCCCE-EecCC-HHHHHHHHHHH
Confidence 3458999999999999999999987754445555566654211 0000000 001111110 11111 1234454443
Q ss_pred ---CCCeEEEEeccccCC--HHHHHHHHhhH
Q 005186 415 ---KPLSVVYLENVDKAD--VHVQNSLSKAI 440 (710)
Q Consensus 415 ---~p~sVI~LDEIDKa~--~~vqn~LLq~L 440 (710)
..+.+||+|=....+ ......|..++
T Consensus 281 ~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 281 TYVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred HhcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 346899999998866 33444444444
No 382
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.03 E-value=0.065 Score=52.46 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=30.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.++|.||+|+|||++++.+|..+...+..++.+|+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 5789999999999999999988765556677777774
No 383
>PRK07667 uridine kinase; Provisional
Probab=94.03 E-value=0.11 Score=52.15 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=29.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
..+.+.|++|+|||++|+.|++.+-....+...+++..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 58999999999999999999998854344545555553
No 384
>PRK14531 adenylate kinase; Provisional
Probab=94.00 E-value=0.055 Score=53.85 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=25.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
.++++||||+|||++++.||+.+ + +..++++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~---g--~~~is~g 34 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH---G--LRHLSTG 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCeEecc
Confidence 58999999999999999999987 2 4445554
No 385
>PRK02496 adk adenylate kinase; Provisional
Probab=94.00 E-value=0.055 Score=53.58 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+++.||+|+|||++|+.||+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999877
No 386
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.99 E-value=0.16 Score=48.57 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=54.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccc-cchhhHHHHHHHhCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRG-KTLADYVAWELLKKPL 417 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G-~t~~~~L~~al~~~p~ 417 (710)
-.+.+.||+|+|||+++++|+..+.-... -|.+|... .+++-..+.+ ....=.+..++...|
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~~~~---------------~i~~~~~lS~G~~~rv~laral~~~p- 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEG-IVTWGSTV---------------KIGYFEQLSGGEKMRLALAKLLLENP- 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECCeE---------------EEEEEccCCHHHHHHHHHHHHHhcCC-
Confidence 38899999999999999999876522111 12222210 1111111211 111123566776665
Q ss_pred eEEEEeccc-cCCHHHHHHHHhhHhC
Q 005186 418 SVVYLENVD-KADVHVQNSLSKAIQT 442 (710)
Q Consensus 418 sVI~LDEID-Ka~~~vqn~LLq~LE~ 442 (710)
.+++|||-. .+++.....|.+++.+
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKE 115 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 799999987 5788888899888864
No 387
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.98 E-value=0.093 Score=58.47 Aligned_cols=84 Identities=10% Similarity=0.035 Sum_probs=51.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcc-cccccccccc---ccccchhhHHHHHHHh
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQ---FRGKTLADYVAWELLK 414 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~-~~~~~G~~~~---f~G~t~~~~L~~al~~ 414 (710)
..+++.|++|+|||+++..+|..+.....+.++++..+... .+. ....+|.+.. +...+....+.+.+.+
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~------qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPE------QIKLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHH------HHHHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 48999999999999999999877754445666666542110 000 0011111110 1112234566777776
Q ss_pred CCCeEEEEeccccC
Q 005186 415 KPLSVVYLENVDKA 428 (710)
Q Consensus 415 ~p~sVI~LDEIDKa 428 (710)
....+|+||+|..+
T Consensus 157 ~~~~lVVIDSIq~l 170 (372)
T cd01121 157 LKPDLVIIDSIQTV 170 (372)
T ss_pred cCCcEEEEcchHHh
Confidence 66789999999654
No 388
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.96 E-value=0.064 Score=55.79 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=26.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
..++|.||||+||+++|+.||+.+ + +..++++.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~---g--~~~is~gd 39 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKE---N--LKHINMGN 39 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---C--CcEEECCh
Confidence 459999999999999999999977 3 44555553
No 389
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.94 E-value=0.054 Score=56.53 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=26.6
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
++|+|++|+|||++|+.|++.+......++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999988533344555543
No 390
>PRK13946 shikimate kinase; Provisional
Probab=93.91 E-value=0.053 Score=54.04 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=27.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
..++|.|.+|+|||++++.||+.+ +.+|+..|
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L---g~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML---GLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCeECcC
Confidence 479999999999999999999988 55665444
No 391
>COG1485 Predicted ATPase [General function prediction only]
Probab=93.85 E-value=0.19 Score=55.16 Aligned_cols=150 Identities=13% Similarity=0.062 Sum_probs=78.0
Q ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCC--CC--------CCCCCeEEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 296 KTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHH--GA--------SPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 296 k~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~--~~--------~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
....+.+...-+..|.|-..++.++.++...+..+. +. ...+.-.+.|+|+-|+|||.|.-..-+.+-+.
T Consensus 13 ~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~ 92 (367)
T COG1485 13 ERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGE 92 (367)
T ss_pred HHHHHhcccCCCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCcc
Confidence 344444555555556666666666655533111110 00 01134589999999999999988777766433
Q ss_pred CcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHH---HHHHHHhhHhC
Q 005186 366 KENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVH---VQNSLSKAIQT 442 (710)
Q Consensus 366 ~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~---vqn~LLq~LE~ 442 (710)
...-+.+ -.. +..+|.- -..+.|.. ..+..+...+.+ ...||.|||++=-+.. +...|+..|=
T Consensus 93 ~k~R~HF--h~F---M~~vH~~-l~~l~g~~------dpl~~iA~~~~~-~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf- 158 (367)
T COG1485 93 RKRRLHF--HRF---MARVHQR-LHTLQGQT------DPLPPIADELAA-ETRVLCFDEFEVTDIADAMILGRLLEALF- 158 (367)
T ss_pred ccccccH--HHH---HHHHHHH-HHHHcCCC------CccHHHHHHHHh-cCCEEEeeeeeecChHHHHHHHHHHHHHH-
Confidence 2111111 000 0000000 00111221 222344444443 3579999999865553 4444444441
Q ss_pred CcccCCCCeEeecCceEEEEccCCCcccc
Q 005186 443 GKLPDSYGREVSVSNAIFVTASSFVEDAR 471 (710)
Q Consensus 443 G~l~d~~Gr~vd~~n~I~IlTSN~g~~~~ 471 (710)
. +++++|+|||...++.
T Consensus 159 ---~---------~GV~lvaTSN~~P~~L 175 (367)
T COG1485 159 ---A---------RGVVLVATSNTAPDNL 175 (367)
T ss_pred ---H---------CCcEEEEeCCCChHHh
Confidence 1 3577999999987764
No 392
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.77 E-value=0.11 Score=53.02 Aligned_cols=26 Identities=4% Similarity=-0.084 Sum_probs=20.5
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHh
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQ 441 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE 441 (710)
++.+++|||+-.+++.....|+....
T Consensus 62 ~~~~liiDE~~~~~~g~l~~l~~~~~ 87 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGYLLLLLSLSP 87 (234)
T ss_pred cCCEEEEeccccCChHHHHHHHhhcc
Confidence 47899999999999977777555443
No 393
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.75 E-value=0.062 Score=52.82 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=21.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+++.||+|+|||++|+.|++.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78899999999999999999876
No 394
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.69 E-value=0.051 Score=53.40 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=22.1
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
.+++.||+|+|||+++++|+..+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998863
No 395
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.68 E-value=0.14 Score=52.95 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.6
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYG 364 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~g 364 (710)
+...+.|.||+|+|||+|++.|+..+..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3568999999999999999999998853
No 396
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.67 E-value=0.26 Score=59.40 Aligned_cols=134 Identities=14% Similarity=0.055 Sum_probs=63.4
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHH-cCC-Ccc
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII-YGG-KEN 368 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L-~gs-~~~ 368 (710)
+..-.+.|.+.+.+.. ..++++..+...|........... ........++|+||+|+|||+++..||..+ ... ...
T Consensus 140 ~~~la~~l~~~l~~~~-~~~~~~~~l~~~L~~~l~il~~~~-~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kk 217 (767)
T PRK14723 140 SGQLARALLERLPVGY-DRPAAMAWIRNELATHLPVLRDED-ALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQ 217 (767)
T ss_pred CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhhccCCC-cccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCe
Confidence 3344455555554432 234455555555544322111111 000123589999999999999998888655 222 223
Q ss_pred eEEecCCCCCCCCCCCCCcc-ccccccccccccccchhhHHHHHHHh-CCCeEEEEeccccCCH
Q 005186 369 FICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKADV 430 (710)
Q Consensus 369 fI~iD~s~~~~e~~~~~sl~-~~~~~G~~~~f~G~t~~~~L~~al~~-~p~sVI~LDEIDKa~~ 430 (710)
+..+++..+.- .....+. .....|.+. +...+. ..+.+++.+ ..+.+||||=....+.
T Consensus 218 V~lit~Dt~Ri--gA~eQL~~~a~~~gvpv-~~~~~~-~~l~~al~~~~~~D~VLIDTAGRs~~ 277 (767)
T PRK14723 218 LALLTTDSFRI--GALEQLRIYGRILGVPV-HAVKDA-ADLRFALAALGDKHLVLIDTVGMSQR 277 (767)
T ss_pred EEEecCcccch--HHHHHHHHHHHhCCCCc-cccCCH-HHHHHHHHHhcCCCEEEEeCCCCCcc
Confidence 33444443210 0000000 111122111 111111 235555554 3457999999987653
No 397
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.63 E-value=0.29 Score=59.69 Aligned_cols=86 Identities=20% Similarity=0.163 Sum_probs=47.5
Q ss_pred EEEEecCCCCchhHH-HHHHHHHHcCCCcceEEecCCCC---------CCCCCCCCCcccccccccccccccc----ch-
Q 005186 340 WFNFTGPDLCGKRKI-AIALAEIIYGGKENFICADLCPQ---------DGEMNNPPKFYHQVVGGDSVQFRGK----TL- 404 (710)
Q Consensus 340 ~lLf~GP~GvGKT~L-AraLAe~L~gs~~~fI~iD~s~~---------~~e~~~~~sl~~~~~~G~~~~f~G~----t~- 404 (710)
++++.||||+|||+- -+.|-+..++....+++.+=... ..++.. -..+.+||...|... |.
T Consensus 67 vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~----~~G~~VGY~iRfe~~~s~~Tri 142 (845)
T COG1643 67 VVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGE----KLGETVGYSIRFESKVSPRTRI 142 (845)
T ss_pred EEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCC----CcCceeeEEEEeeccCCCCcee
Confidence 899999999999874 45555655544333332211100 000000 023456665544322 11
Q ss_pred ----hhHHHHHHHh----CCCeEEEEeccccCC
Q 005186 405 ----ADYVAWELLK----KPLSVVYLENVDKAD 429 (710)
Q Consensus 405 ----~~~L~~al~~----~p~sVI~LDEIDKa~ 429 (710)
-|.|...+.. ..+++|+|||++.=+
T Consensus 143 k~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERS 175 (845)
T COG1643 143 KVMTDGILLREIQNDPLLSGYSVVIIDEAHERS 175 (845)
T ss_pred EEeccHHHHHHHhhCcccccCCEEEEcchhhhh
Confidence 2567777764 457999999998643
No 398
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.59 E-value=0.083 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
...+.+.||+|+|||+++++|+..+-
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35889999999999999999998773
No 399
>PLN02165 adenylate isopentenyltransferase
Probab=93.54 E-value=0.068 Score=58.52 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=22.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.||+|+|||.||..||+.+
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHc
Confidence 379999999999999999999987
No 400
>PRK14528 adenylate kinase; Provisional
Probab=93.53 E-value=0.078 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=21.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+++.||||+|||++|+.||+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999877
No 401
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.53 E-value=0.091 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
.+.+.||+|+|||++|+.|+..|-
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 367999999999999999999984
No 402
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.52 E-value=0.086 Score=53.49 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=60.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc--CCCcceEEecCCCCCCCCCCCCCcc-cccccccccc--ccccchhhHHHHH--
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY--GGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQ--FRGKTLADYVAWE-- 411 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~--gs~~~fI~iD~s~~~~e~~~~~sl~-~~~~~G~~~~--f~G~t~~~~L~~a-- 411 (710)
..++|.||+|+|||+.+--||..+- +....++..|...... ...+. .....|.+.. +........+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga----~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGA----VEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHH----HHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccH----HHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 4799999999999998877776553 3334466666543110 00000 0111111100 0001111223233
Q ss_pred -HHhCCCeEEEEeccccCCH--HHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 412 -LLKKPLSVVYLENVDKADV--HVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 412 -l~~~p~sVI~LDEIDKa~~--~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
...+.+.+||+|=..+.+. .....|.++++.- .-..+++|+.++.+...
T Consensus 78 ~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~----------~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL----------NPDEVHLVLSATMGQED 129 (196)
T ss_dssp HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH----------SSSEEEEEEEGGGGGHH
T ss_pred HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc----------CCccceEEEecccChHH
Confidence 3345678999999988774 3445555555422 11357788888875543
No 403
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.49 E-value=0.19 Score=57.86 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=22.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|+||+|+|||+++..||..+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 599999999999999999999765
No 404
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=93.42 E-value=0.37 Score=58.52 Aligned_cols=91 Identities=16% Similarity=0.055 Sum_probs=50.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHH----hC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL----KK 415 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~----~~ 415 (710)
.+++.|++|||||+++++|.+.+-..+..++-+--+... ...+ ....|.. ..|+...+...-. -.
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~A-----a~~L--~~~~g~~----a~Ti~~~~~~~~~~~~~~~ 438 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKA-----AEGL--QAESGIE----SRTLASLEYAWANGRDLLS 438 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHH-----HHHH--HhccCCc----eeeHHHHHhhhccCcccCC
Confidence 789999999999999999988774333333322111000 0000 0001111 1122111111100 12
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHh
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQ 441 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE 441 (710)
+..||++||+-.++......|++...
T Consensus 439 ~~~llIvDEasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 439 DKDVLVIDEAGMVGSRQMARVLKEAE 464 (744)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHHH
Confidence 45799999999999988888887554
No 405
>PHA02624 large T antigen; Provisional
Probab=93.40 E-value=0.15 Score=59.63 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=27.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..++|+||+|+|||+++.+|.+.+-|. .+.+++.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~---vlsVNsP 465 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGK---SLNVNCP 465 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCe---EEEeeCC
Confidence 499999999999999999999999443 4445544
No 406
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.39 E-value=0.27 Score=53.01 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=61.5
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCC-CcceEEecCCCCCCCCC--CCCCccccccccccccccccchhhHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLCPQDGEMN--NPPKFYHQVVGGDSVQFRGKTLADYVAWELL 413 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs-~~~fI~iD~s~~~~e~~--~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~ 413 (710)
+.+-+|..||+|+||++..-++-..+... ....+.+.=. -||. +..+++.+.-+|.+. ..+...|..+++
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDP---IE~vh~skkslI~QREvG~dT----~sF~~aLraALR 196 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDP---IEYVHESKKSLINQREVGRDT----LSFANALRAALR 196 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCc---hHhhhcchHhhhhHHHhcccH----HHHHHHHHHHhh
Confidence 45789999999999988777776666321 1223322111 1122 222333333333332 234456778888
Q ss_pred hCCCeEEEEeccccCCHHHHHHHHhhHhCCccc
Q 005186 414 KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 446 (710)
Q Consensus 414 ~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~ 446 (710)
+.| .|||+=|+- +.+....=+.+-|+|-+.
T Consensus 197 eDP-DVIlvGEmR--D~ETi~~ALtAAETGHLV 226 (353)
T COG2805 197 EDP-DVILVGEMR--DLETIRLALTAAETGHLV 226 (353)
T ss_pred cCC-CEEEEeccc--cHHHHHHHHHHHhcCCEE
Confidence 887 788888864 577788888999999754
No 407
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=93.38 E-value=0.084 Score=57.31 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=27.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..++++||+|+|||.+|..||+.+ +..+|..|.-
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~---~~~iis~Ds~ 38 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRL---NGEIISADSM 38 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhC---CCcEEecccc
Confidence 389999999999999999999987 4455555443
No 408
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.36 E-value=0.33 Score=52.39 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=24.2
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
.+..+.+.||+|+|||++|+.|+..+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999998874
No 409
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.35 E-value=0.34 Score=48.87 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++++||.|+|||++.++|+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHH
Confidence 379999999999999999999644
No 410
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.33 E-value=0.084 Score=52.08 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=24.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 371 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~ 371 (710)
.+.+.||||+|||++|+.||+.+ +.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCceee
Confidence 46789999999999999999998 455543
No 411
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.32 E-value=0.069 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.||+|+|||+++++|+..+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999865
No 412
>PF13245 AAA_19: Part of AAA domain
Probab=93.27 E-value=0.1 Score=44.95 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=17.5
Q ss_pred EEEEecCCCCchh-HHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKR-KIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT-~LAraLAe~L 362 (710)
.+++.||||+||| +++..+++.+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 6777999999999 4555666555
No 413
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.25 E-value=0.18 Score=54.60 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=24.0
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+..+++.|++|+|||++|..||+.+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999988
No 414
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.19 E-value=0.11 Score=52.09 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=17.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++.||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 69999999999998776666655
No 415
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.10 E-value=0.39 Score=55.80 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=46.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCC--CcceEEecCCCCCCCCCCCCCcc-ccccccccccccccchhhHHHHHHHh
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGG--KENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAWELLK 414 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs--~~~fI~iD~s~~~~e~~~~~sl~-~~~~~G~~~~f~G~t~~~~L~~al~~ 414 (710)
...++|+||+|+|||+++..||..+... ...+..+++..+.. .....+. .....|.. +....-...+...+.+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi--gA~EQLk~ya~iLgv~--v~~a~d~~~L~~aL~~ 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV--GGREQLHSYGRQLGIA--VHEADSAESLLDLLER 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc--cHHHHHHHhhcccCce--eEecCcHHHHHHHHHH
Confidence 3589999999999999999988755321 23344445443210 0000000 00111111 0000011234444443
Q ss_pred -CCCeEEEEeccccCCHH
Q 005186 415 -KPLSVVYLENVDKADVH 431 (710)
Q Consensus 415 -~p~sVI~LDEIDKa~~~ 431 (710)
..+.+||||.....+.+
T Consensus 426 l~~~DLVLIDTaG~s~~D 443 (559)
T PRK12727 426 LRDYKLVLIDTAGMGQRD 443 (559)
T ss_pred hccCCEEEecCCCcchhh
Confidence 34689999999876543
No 416
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.08 E-value=0.083 Score=53.66 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=24.4
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
++++||||+||+++|+.||+.+ .+..++++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~-----g~~~is~g 31 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY-----GLPHISTG 31 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCCeeehh
Confidence 7899999999999999999876 24455554
No 417
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.93 E-value=0.1 Score=53.20 Aligned_cols=31 Identities=23% Similarity=0.140 Sum_probs=25.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
.++++||||+|||++|+.||+.+ .+..++++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~-----~~~~is~~ 32 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY-----GIPHISTG 32 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEECC
Confidence 48999999999999999999987 24555655
No 418
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.89 E-value=0.1 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEecCCCCchhHHHHHHHHHHc
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
+.+.||+|+|||++|+.|+..+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999884
No 419
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.88 E-value=0.34 Score=49.20 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
+++|.||+|+|||++.++|+-.+
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 88999999999999999998654
No 420
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.86 E-value=0.11 Score=51.19 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=22.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
-+.|.|++|+|||++++.|++.+-
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 421
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=92.81 E-value=0.097 Score=63.92 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=53.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccc-cchhhHH----HHHHHh
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRG-KTLADYV----AWELLK 414 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G-~t~~~~L----~~al~~ 414 (710)
|+++.||+|+|||..|.+.|..+ +..++.+|.+.....+.....+ |. +.+ ..+.+.. ......
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~---g~~v~E~Nas~~RSk~~l~~~~------~~---~~~s~si~~~~~~~~~~~~~~ 426 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKEL---GFKVVEKNASDVRSKKELLNKL------GN---ATSSHSIKGSKKKKGNRQSLN 426 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhc---ccceeecCccccccccHHHhhh------hc---cccccchhhhhcccccccccc
Confidence 68999999999999999999988 6678888877422211100000 00 000 0000000 000112
Q ss_pred CCCeEEEEeccccCCH---HHHHHHHhhHh
Q 005186 415 KPLSVVYLENVDKADV---HVQNSLSKAIQ 441 (710)
Q Consensus 415 ~p~sVI~LDEIDKa~~---~vqn~LLq~LE 441 (710)
..+.||++||||-+.. ..+..|.+++.
T Consensus 427 ~~~~vil~devD~~~~~dRg~v~~l~~l~~ 456 (871)
T KOG1968|consen 427 SDHFLILMDEVDGMFGEDRGGVSKLSSLCK 456 (871)
T ss_pred cceeEEEEeccccccchhhhhHHHHHHHHH
Confidence 4566999999998866 56666666666
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.80 E-value=0.33 Score=49.80 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
..++|+||.|+|||++.+.|+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 47899999999999999999853
No 423
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.79 E-value=0.4 Score=46.92 Aligned_cols=101 Identities=20% Similarity=0.094 Sum_probs=55.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCC-c---cccccc--cccccccccch-hhHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPK-F---YHQVVG--GDSVQFRGKTL-ADYVAWE 411 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~s-l---~~~~~~--G~~~~f~G~t~-~~~L~~a 411 (710)
..+.+.||+|+|||+|+++|+-.+.-... -+.++....-. |...+. + ...... +....+.|... .=.+..+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~~~~~i~-~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lara 105 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSG-RIGMPEGEDLL-FLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARL 105 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCCceEE-EECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999976532222 12232210000 100000 0 000000 01111222211 1135566
Q ss_pred HHhCCCeEEEEeccc-cCCHHHHHHHHhhHhC
Q 005186 412 LLKKPLSVVYLENVD-KADVHVQNSLSKAIQT 442 (710)
Q Consensus 412 l~~~p~sVI~LDEID-Ka~~~vqn~LLq~LE~ 442 (710)
+...| .+++|||-. .+++..+..|.++|.+
T Consensus 106 l~~~p-~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 106 LLHKP-KFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred HHcCC-CEEEEECCccccCHHHHHHHHHHHHH
Confidence 66555 899999987 5789999999999974
No 424
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.78 E-value=0.16 Score=57.86 Aligned_cols=84 Identities=8% Similarity=0.039 Sum_probs=50.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcc-ccccccccc---cccccchhhHHHHHHHh
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSV---QFRGKTLADYVAWELLK 414 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~-~~~~~G~~~---~f~G~t~~~~L~~al~~ 414 (710)
..+++.|++|+|||+++..++..+-....+.++++..+... .+. .....|.+. .+...+....+.+.+.+
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~------qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESAS------QIKLRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHH------HHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 48999999999999999999877643445667776543110 000 000111110 01111223456677776
Q ss_pred CCCeEEEEeccccC
Q 005186 415 KPLSVVYLENVDKA 428 (710)
Q Consensus 415 ~p~sVI~LDEIDKa 428 (710)
....+|+||+|..+
T Consensus 155 ~~~~lVVIDSIq~l 168 (446)
T PRK11823 155 EKPDLVVIDSIQTM 168 (446)
T ss_pred hCCCEEEEechhhh
Confidence 66789999999755
No 425
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=92.77 E-value=0.5 Score=50.94 Aligned_cols=133 Identities=16% Similarity=0.137 Sum_probs=71.8
Q ss_pred HhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCC
Q 005186 301 ALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGE 380 (710)
Q Consensus 301 ~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e 380 (710)
.|.+-..|..+.+..+.+.+..+..+.. +....++|+|+.|.||+++...|..++ |... +.+..+.
T Consensus 46 ~L~~~~~~d~~~~~~l~~~lg~~L~~~~-------~~~~~~~l~G~g~nGKStl~~~l~~l~-G~~~--~~~~~~~---- 111 (304)
T TIGR01613 46 FLLETFGGDNELIEYLQRVIGYSLTGNY-------TEQKLFFLYGNGGNGKSTFQNLLSNLL-GDYA--TTAVASL---- 111 (304)
T ss_pred HHHHHhCCCHHHHHHHHHHHhHHhcCCC-------CceEEEEEECCCCCcHHHHHHHHHHHh-Chhh--ccCCcch----
Confidence 4454455666677777777776655421 234589999999999999999887654 5422 1111110
Q ss_pred CCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccC--CCCeEeecC-c
Q 005186 381 MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD--SYGREVSVS-N 457 (710)
Q Consensus 381 ~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d--~~Gr~vd~~-n 457 (710)
....+-+. .| .+.. +. ...+++.||+++-...-.+.|..+.....+.- -+...+.+. .
T Consensus 112 -------~~~~~~~~--~f-------~~a~-l~--gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~ 172 (304)
T TIGR01613 112 -------KMNEFQEH--RF-------GLAR-LE--GKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPK 172 (304)
T ss_pred -------hhhhccCC--Cc-------hhhh-hc--CCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEe
Confidence 00000000 00 1111 21 23588999998653333345555543233321 122344554 4
Q ss_pred eEEEEccCC
Q 005186 458 AIFVTASSF 466 (710)
Q Consensus 458 ~I~IlTSN~ 466 (710)
+.+|++||-
T Consensus 173 ~~~i~~tN~ 181 (304)
T TIGR01613 173 FTLVQSTNH 181 (304)
T ss_pred eEEEEEcCC
Confidence 778999995
No 426
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.76 E-value=0.15 Score=51.50 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=31.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..++++||+|+|||.++..++......+...+.+|..
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899999999999999999887776556677777775
No 427
>PRK04182 cytidylate kinase; Provisional
Probab=92.74 E-value=0.093 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+++.|++|+|||++|+.||+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999987
No 428
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.72 E-value=0.45 Score=50.22 Aligned_cols=74 Identities=5% Similarity=-0.007 Sum_probs=51.5
Q ss_pred hHHhcCcceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 005186 592 QDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGFLD 671 (710)
Q Consensus 592 ~efl~RiD~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~~~L~e 671 (710)
.+|-.|++..|...|++.+.....+...|..- +... =-++++++..|..+ -+.+-+.|.++...++..
T Consensus 185 ~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a-----~~~~-~l~~~~a~~~i~~~------sqg~P~lin~~~~~Al~~ 252 (269)
T COG3267 185 RELEQRIDIRIELPPLTEAETGLYLRHRLEGA-----GLPE-PLFSDDALLLIHEA------SQGIPRLINNLATLALDA 252 (269)
T ss_pred HhhhheEEEEEecCCcChHHHHHHHHHHHhcc-----CCCc-ccCChhHHHHHHHH------hccchHHHHHHHHHHHHH
Confidence 46778888779999999998888887776543 1222 23789999988775 223566677777666666
Q ss_pred HHHhcC
Q 005186 672 AQEKYN 677 (710)
Q Consensus 672 l~~~~~ 677 (710)
....++
T Consensus 253 a~~a~~ 258 (269)
T COG3267 253 AYSAGE 258 (269)
T ss_pred HHHcCC
Confidence 665553
No 429
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.66 E-value=0.82 Score=54.27 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=24.3
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHhCC
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
+..||++||+-.++......|++++..+
T Consensus 265 ~~dvlIvDEaSMvd~~lm~~ll~al~~~ 292 (615)
T PRK10875 265 HLDVLVVDEASMVDLPMMARLIDALPPH 292 (615)
T ss_pred CCCeEEEChHhcccHHHHHHHHHhcccC
Confidence 3479999999999999999999998643
No 430
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.64 E-value=0.34 Score=56.94 Aligned_cols=75 Identities=19% Similarity=0.096 Sum_probs=48.0
Q ss_pred HHHHHHHhcCcccccHHHH-HHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC-CCcceEEe
Q 005186 295 WKTLFRALTEKIDWQDEAI-SVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG-GKENFICA 372 (710)
Q Consensus 295 lk~L~k~L~~~ViGQdeAi-~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g-s~~~fI~i 372 (710)
=..+.+.|.+...==+..+ .+|++.|...... + .+....++|+|++|+|||++|++||+.+.. ...+++.+
T Consensus 355 gt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~---r----~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~l 427 (568)
T PRK05537 355 GTELRRRLREGLEIPEWFSFPEVVAELRRTYPP---R----HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLL 427 (568)
T ss_pred HHHHHHHHHCCCCCChhhcHHHHHHHHHHHhcc---c----cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEe
Confidence 3667777776654444433 3444544444321 1 123458899999999999999999998853 34456777
Q ss_pred cCCC
Q 005186 373 DLCP 376 (710)
Q Consensus 373 D~s~ 376 (710)
|...
T Consensus 428 D~D~ 431 (568)
T PRK05537 428 DGDV 431 (568)
T ss_pred CCcH
Confidence 6663
No 431
>PLN02840 tRNA dimethylallyltransferase
Probab=92.62 E-value=0.12 Score=58.31 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=28.7
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
...+++.||+|+|||++|..||+.+ +..+|.+|.-
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~---~~~iis~Ds~ 55 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRL---NGEIISADSV 55 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHC---CCCeEecccc
Confidence 4479999999999999999999988 4456666553
No 432
>PRK14527 adenylate kinase; Provisional
Probab=92.62 E-value=0.11 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=22.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++++||+|+|||++|+.||+.+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 433
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.61 E-value=0.41 Score=47.04 Aligned_cols=101 Identities=19% Similarity=0.237 Sum_probs=53.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCC----CCCCCCCcccc--cccccccc---cccc-chhhHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG----EMNNPPKFYHQ--VVGGDSVQ---FRGK-TLADYVA 409 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~----e~~~~~sl~~~--~~~G~~~~---f~G~-t~~~~L~ 409 (710)
.+.+.||+|+|||+|.++|+-.+.-... -|.+|...... .+...-.+.++ .++..... +-|+ ...=.+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la 108 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSG-RVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLA 108 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHH
Confidence 7899999999999999999976532211 23333221000 00000000000 00000000 1111 1111355
Q ss_pred HHHHhCCCeEEEEeccc-cCCHHHHHHHHhhHhC
Q 005186 410 WELLKKPLSVVYLENVD-KADVHVQNSLSKAIQT 442 (710)
Q Consensus 410 ~al~~~p~sVI~LDEID-Ka~~~vqn~LLq~LE~ 442 (710)
.++...| .|++|||-- .+++..+..|+++|.+
T Consensus 109 ~al~~~p-~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 109 RALYGNP-RILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred HHHhcCC-CEEEEECCccccCHHHHHHHHHHHHH
Confidence 5565554 799999987 5788888888888863
No 434
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=92.58 E-value=0.54 Score=55.16 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=53.0
Q ss_pred EEEEecCCCCchhH-HHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcc----------ccccccccccccc----cch
Q 005186 340 WFNFTGPDLCGKRK-IAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY----------HQVVGGDSVQFRG----KTL 404 (710)
Q Consensus 340 ~lLf~GP~GvGKT~-LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~----------~~~~~G~~~~f~G----~t~ 404 (710)
.+++.|++|+|||+ +-+.|++.-|..... |-|..-.. .. .-++. ..+-+||...|.. .|.
T Consensus 68 vlIviGeTGsGKSTQipQyL~eaG~~~~g~---I~~TQPRR-VA-avslA~RVAeE~~~~lG~~VGY~IRFed~ts~~Tr 142 (674)
T KOG0922|consen 68 VLIVIGETGSGKSTQIPQYLAEAGFASSGK---IACTQPRR-VA-AVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTR 142 (674)
T ss_pred EEEEEcCCCCCccccHhHHHHhcccccCCc---EEeecCch-HH-HHHHHHHHHHHhCCCcCceeeeEEEecccCCCcee
Confidence 89999999999976 778888877755443 22321000 00 00000 1123444333321 111
Q ss_pred -----hhHHHHHHHh----CCCeEEEEecccc--CCHHHHHHHHhhHh
Q 005186 405 -----ADYVAWELLK----KPLSVVYLENVDK--ADVHVQNSLSKAIQ 441 (710)
Q Consensus 405 -----~~~L~~al~~----~p~sVI~LDEIDK--a~~~vqn~LLq~LE 441 (710)
-|.|...+.. ..|+||+|||++. ++.++.=.||+-+-
T Consensus 143 ikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~ 190 (674)
T KOG0922|consen 143 IKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKIL 190 (674)
T ss_pred EEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHH
Confidence 1444444443 3589999999986 45566555555543
No 435
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=92.56 E-value=0.32 Score=57.39 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=24.0
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHhC
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQT 442 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE~ 442 (710)
+..||++||+-.++......|++++..
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al~~ 285 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKALPP 285 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhcCC
Confidence 467999999999999999999998864
No 436
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.54 E-value=0.1 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=22.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.||+|+|||+|++.|+..+
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999999865
No 437
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.45 E-value=0.17 Score=50.13 Aligned_cols=39 Identities=26% Similarity=0.153 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+...+.|.|++|+|||++|+.|+..+.......+.++..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d 55 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD 55 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh
Confidence 345899999999999999999999885444445566554
No 438
>PRK13975 thymidylate kinase; Provisional
Probab=92.34 E-value=0.11 Score=51.82 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=22.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
-+.|.|++|+|||++|+.||+.+
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999988
No 439
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=92.29 E-value=0.12 Score=55.63 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=26.1
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
++++||+|+|||.+|..||+.+ +..+|.+|--
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~---~~~iis~Ds~ 33 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKL---NAEIISVDSM 33 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhC---CCcEEEechh
Confidence 7899999999999999999987 4456655543
No 440
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=92.24 E-value=0.15 Score=55.30 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=28.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
-.++++|||++|||.||-.||+.+ +..+|.+|--
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~---~~eIIs~DSm 37 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRL---GGEIISLDSM 37 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHc---CCcEEecchh
Confidence 379999999999999999999998 5667766644
No 441
>PRK05439 pantothenate kinase; Provisional
Probab=92.24 E-value=0.22 Score=54.14 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+..+.+.|++|+|||++|+.|++.+
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999977
No 442
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.23 E-value=0.17 Score=42.05 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=25.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGK 366 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~ 366 (710)
..+|.||+|+|||+|.-||.-.|++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 799999999999999999999998764
No 443
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.19 E-value=0.11 Score=53.16 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=22.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYG 364 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~g 364 (710)
-++|.|+||+|||++|+.||+.|-.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 4799999999999999999999953
No 444
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=92.16 E-value=0.096 Score=50.19 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=23.4
Q ss_pred EecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 343 FTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 343 f~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+.||||+||+++|+.||+.+ .++.++++
T Consensus 1 i~G~PgsGK~t~~~~la~~~-----~~~~is~~ 28 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY-----GLVHISVG 28 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH-----TSEEEEHH
T ss_pred CcCCCCCChHHHHHHHHHhc-----CcceechH
Confidence 58999999999999999976 45666665
No 445
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.08 E-value=0.13 Score=49.68 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.|++|+|||++|+.||+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999977
No 446
>PRK04040 adenylate kinase; Provisional
Probab=92.05 E-value=0.19 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=22.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++++|++|+|||++++.|++.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999988
No 447
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.04 E-value=0.48 Score=50.01 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..++|.||+|+|||+|++.|++.+.
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 3799999999999999999998774
No 448
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=92.03 E-value=0.67 Score=45.17 Aligned_cols=99 Identities=20% Similarity=0.125 Sum_probs=51.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccc-cccccccccccccchhhHHHHHHHhC--
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYH-QVVGGDSVQFRGKTLADYVAWELLKK-- 415 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~-~~~~G~~~~f~G~t~~~~L~~al~~~-- 415 (710)
...++.||.|+|||.+.++++-.+........+-+-. ..+.+....++.. ....+... |....-.+..++...
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~i~~~~~lS~---G~~~~~~la~~L~~~~~ 97 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGV-KAGCIVAAVSAELIFTRLQLSG---GEKELSALALILALASL 97 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcc-cCCCcceeeEEEEehheeeccc---cHHHHHHHHHHHHhcCC
Confidence 4899999999999999999887665433222220000 0000000000000 00001111 111123455666542
Q ss_pred -CCeEEEEeccccC-CHHHHHHHHhhHh
Q 005186 416 -PLSVVYLENVDKA-DVHVQNSLSKAIQ 441 (710)
Q Consensus 416 -p~sVI~LDEIDKa-~~~vqn~LLq~LE 441 (710)
+..+++|||+.+. ++.-...+.+++.
T Consensus 98 ~~~~llllDEp~~gld~~~~~~l~~~l~ 125 (162)
T cd03227 98 KPRPLYILDEIDRGLDPRDGQALAEAIL 125 (162)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 5689999999874 6666666666664
No 449
>PLN02199 shikimate kinase
Probab=91.96 E-value=0.33 Score=52.47 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=26.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
.++|+|.+|+|||++++.||+.+ +.+|+..|
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~L---g~~fIDtD 134 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVL---GYTFFDCD 134 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEehH
Confidence 79999999999999999999988 56666544
No 450
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.95 E-value=0.1 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=21.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.||+|+|||++++.|++.+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 68999999999999999999865
No 451
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=91.89 E-value=0.17 Score=54.70 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=21.3
Q ss_pred EEEEecCCCCchhHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~ 361 (710)
.++++||||+|||.||-.||+.
T Consensus 6 ii~I~GpTasGKS~LAl~LA~~ 27 (300)
T PRK14729 6 IVFIFGPTAVGKSNILFHFPKG 27 (300)
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 7999999999999999999998
No 452
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.87 E-value=1.6 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
...+.|+||+|+|||++...||..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988864
No 453
>PRK10646 ADP-binding protein; Provisional
Probab=91.83 E-value=0.3 Score=47.80 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 310 DEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 310 deAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++...+.+.|..... +...++|.|+=|+|||+++|+|++.+
T Consensus 11 ~~~t~~l~~~la~~l~-----------~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 11 EQATLDLGARVAKACD-----------GATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred HHHHHHHHHHHHHhCC-----------CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4455666666654432 23489999999999999999999988
No 454
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=91.82 E-value=0.32 Score=45.93 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=23.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...++|.|+=|+|||+++|.|++.+
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3599999999999999999999988
No 455
>PLN02674 adenylate kinase
Probab=91.82 E-value=0.16 Score=53.47 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=27.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
..++|.||||+||+++|+.||+.+ .+..++++.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~-----~~~his~Gd 64 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY-----CLCHLATGD 64 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCcEEchhH
Confidence 468999999999999999999976 356666663
No 456
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.80 E-value=0.23 Score=50.83 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=30.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+++.||+|+|||.+|..+|......+.+.+.+++.
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4899999999999999999987665556677777765
No 457
>PRK15453 phosphoribulokinase; Provisional
Probab=91.77 E-value=0.24 Score=53.21 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=28.9
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
...+.+.|.+|+|||++|++|++.+-..+.....+++..
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~ 43 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDS 43 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 358999999999999999999987743333344455553
No 458
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.70 E-value=0.13 Score=49.01 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEecCCCCchhHHHHHHHHHH
Q 005186 341 FNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L 362 (710)
++|.||+|+|||++++.|++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6789999999999999999865
No 459
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=91.63 E-value=0.2 Score=49.13 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=24.3
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...++++.|++|+||++++++|++.+
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l 36 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEEL 36 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHh
Confidence 45699999999999999999999999
No 460
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.59 E-value=0.39 Score=48.70 Aligned_cols=36 Identities=14% Similarity=0.004 Sum_probs=28.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
.+.+.++|++|.|||+.|-.+|-...|.+.++..+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ 57 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ 57 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 468999999999999999988876666555544443
No 461
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=91.58 E-value=0.25 Score=50.23 Aligned_cols=37 Identities=30% Similarity=0.241 Sum_probs=30.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+++.|++|+|||.+|..+|..+...+.+.+.++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4899999999999999999998775556677777654
No 462
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=91.58 E-value=0.52 Score=53.84 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=28.0
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
.+..++|.|++|+|||++|..||..+- -..++..|.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg--~~~ii~tD~ 289 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLG--ITRIVSTDA 289 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC--CcEEeehhH
Confidence 357999999999999999999999872 122555554
No 463
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=91.56 E-value=0.47 Score=59.05 Aligned_cols=91 Identities=11% Similarity=-0.041 Sum_probs=49.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHH----HhC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL----LKK 415 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al----~~~ 415 (710)
.+++.|++|||||++.+++.+.+-..+..++-+-.+.. ....+ +...+....|+...+...- .-.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGk----------AA~~L-~e~tGi~a~TI~sll~~~~~~~~~l~ 432 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGI----------AAENL-EGGSGIASRTIASLEHGWGQGRDLLT 432 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHH----------HHHHH-hhccCcchhhHHHHHhhhcccccccc
Confidence 67899999999999999887766322222322211100 00000 0001111122211111100 012
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHh
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQ 441 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE 441 (710)
+..|||+||+-.++......|++..+
T Consensus 433 ~~~vlIVDEASMv~~~~m~~LL~~a~ 458 (988)
T PRK13889 433 SRDVLVIDEAGMVGTRQLERVLSHAA 458 (988)
T ss_pred cCcEEEEECcccCCHHHHHHHHHhhh
Confidence 45699999999999998888888664
No 464
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=0.017 Score=70.07 Aligned_cols=111 Identities=24% Similarity=0.358 Sum_probs=77.3
Q ss_pred CCccCCCCCcchhhhhhcCCCCCCCCCccc-ccccchhHHhcCcceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceE
Q 005186 556 TRNLDLNLPAEEDEVLVLDSDDDRNSDSSE-NTKSWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLL 634 (710)
Q Consensus 556 ~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e-~~~~f~~efl~RiD~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~L 634 (710)
..++|||+|++.+|..... ..-.+++... ....|.-++.+|++..|.|+|+|++-.++-+.+.|.++|...++..+.+
T Consensus 762 id~i~lf~~l~~~~~~~i~-~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l~ 840 (898)
T KOG1051|consen 762 IDELDLNLPLDRDELIEIV-NKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALLG 840 (898)
T ss_pred cceeeeecccchhhHhhhh-hhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhee
Confidence 3578999999755322111 0001111111 2224899999999999999999999999999999999999888777779
Q ss_pred EeCHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHH
Q 005186 635 EIDRKVMEQLLAAA-YLSESNRVIEDWLEKVLVRG 668 (710)
Q Consensus 635 eId~eale~La~~~-~~~~GaR~le~~IE~vl~~~ 668 (710)
+|++++...|.... |.. +...+..|++.+..+.
T Consensus 841 ei~~~~~~~i~~~~~~~~-~~e~~~~~l~~~~~~~ 874 (898)
T KOG1051|consen 841 EVEDGLTERILVADGWSQ-GKEVFQPQLETVKKKV 874 (898)
T ss_pred eecCCceEEEEecccccc-chhhhcchhheecccc
Confidence 99999999987764 655 5444455555554333
No 465
>PRK14526 adenylate kinase; Provisional
Probab=91.41 E-value=0.19 Score=51.59 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=21.1
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|+||+|+||+++|+.||+.+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 466
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=91.28 E-value=0.27 Score=52.44 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=24.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
-++++|-||+|||++|+.|++.+-......+.++
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4799999999999999999998865445555555
No 467
>PF12846 AAA_10: AAA-like domain
Probab=91.24 E-value=0.22 Score=52.07 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=32.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+++++|++|+|||.+++.+...+...+..++.+|..
T Consensus 3 h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 799999999999999999998888777888888776
No 468
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.23 E-value=0.18 Score=50.32 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++++|.||||||++++.|+ .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 47899999999999999999 44
No 469
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=91.21 E-value=0.28 Score=55.57 Aligned_cols=101 Identities=12% Similarity=0.014 Sum_probs=59.9
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 417 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~ 417 (710)
..+++=.||.|||||++=+-|+...+ + +..+. . +++.++..... + -.+.+. -+
T Consensus 208 N~NliELgPrGTGKS~vy~eiSp~~~-----l--iSGG~-----~-----T~A~LFyn~~~--~------~~GlV~--~~ 260 (457)
T PF13337_consen 208 NYNLIELGPRGTGKSYVYKEISPYGI-----L--ISGGQ-----V-----TVAKLFYNMST--G------QIGLVG--RW 260 (457)
T ss_pred ccceEEEcCCCCCceeehhhcCcccE-----E--EECCC-----c-----chHHheeeccC--C------cceeee--ec
Confidence 46899999999999998776654321 1 11110 0 01111111100 0 001111 14
Q ss_pred eEEEEeccccCC---HHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCC
Q 005186 418 SVVYLENVDKAD---VHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFV 467 (710)
Q Consensus 418 sVI~LDEIDKa~---~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g 467 (710)
.+|.||||.... ++..+.|..+|+.|.|..+.. + --.++=+||.-|+.
T Consensus 261 D~VafDEv~~i~f~d~d~i~imK~YMesG~fsRG~~-~-i~a~as~vf~GNi~ 311 (457)
T PF13337_consen 261 DVVAFDEVAGIKFKDKDEIQIMKDYMESGSFSRGKE-E-INADASMVFVGNIN 311 (457)
T ss_pred cEEEEEeccCcccCChHHHHHHHHHHhccceeeccc-c-cccceeEEEEcCcC
Confidence 589999999874 677799999999999986542 2 22345577777864
No 470
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=91.18 E-value=0.14 Score=54.56 Aligned_cols=32 Identities=16% Similarity=-0.052 Sum_probs=25.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
.++|.|++|+|||++|+.|++.+. .++.++..
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D 35 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP----KAVNVNRD 35 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC----CCEEEecc
Confidence 688999999999999999999772 34555554
No 471
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.10 E-value=0.2 Score=52.38 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=25.0
Q ss_pred EecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 343 FTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 343 f~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+.||+|+|||++++++++.+...+.+.+.+|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 479999999999999999997766677777776
No 472
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.09 E-value=0.84 Score=47.15 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.||+|.|||++.+.|+...
T Consensus 31 ~~~~l~G~n~~GKstll~~i~~~~ 54 (222)
T cd03285 31 RFLIITGPNMGGKSTYIRQIGVIV 54 (222)
T ss_pred eEEEEECCCCCChHHHHHHHHHHH
Confidence 378999999999999999888654
No 473
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=91.08 E-value=0.23 Score=49.29 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=22.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
-+.|.|++|+|||++++.|++.+-
T Consensus 5 ~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999884
No 474
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=91.01 E-value=0.34 Score=54.04 Aligned_cols=53 Identities=13% Similarity=-0.009 Sum_probs=39.9
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccc
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGD 395 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~ 395 (710)
..+.++++||..+|||+|+..||+.+......+..+|..- .+.++.||+.+..
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDv------GQ~ei~pPg~ISL 124 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADV------GQSEIGPPGFISL 124 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCC------CCcccCCCceEEe
Confidence 4679999999999999999999999976566677777762 1234556665543
No 475
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=90.94 E-value=0.3 Score=41.66 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=26.3
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
+++.|..|+|||+++..||..+-..+.+...+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 678899999999999999998855455555555
No 476
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=90.90 E-value=1.2 Score=45.68 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.||+|.|||++.+.|+-..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHH
Confidence 478999999999999999997533
No 477
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=90.84 E-value=0.22 Score=49.57 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=21.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.|++|+|||+++++|+..+
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999999977
No 478
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=90.81 E-value=0.25 Score=48.53 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=25.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
++..+|+||+|+|||+++.+|.-.|+|.
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L~~~ 46 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYALGGQ 46 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHSS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4689999999999999999999888764
No 479
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.80 E-value=0.16 Score=56.16 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
-+.|.||+|||||++-|+||-..
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57799999999999999999644
No 480
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=90.76 E-value=0.68 Score=46.66 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=19.6
Q ss_pred EEEEecCCCCchhHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe 360 (710)
.++|.||+|+|||++.++|+.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 699999999999999999883
No 481
>PRK12338 hypothetical protein; Provisional
Probab=90.76 E-value=0.21 Score=54.44 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+..+++.|++|+|||++|++||+.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999987
No 482
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=90.72 E-value=0.28 Score=49.41 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=27.9
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.+..+++.|++|+|||+++..+.+.+. ...++.+|...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~ 51 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADE 51 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHH
Confidence 567899999999999999999988764 45677787775
No 483
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=90.64 E-value=0.23 Score=50.14 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEecCCCCchhHHHHHHHHHH
Q 005186 341 FNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L 362 (710)
+.+.|++|+|||++|+.|++.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999987
No 484
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=90.63 E-value=0.55 Score=58.90 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=53.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHH----Hh
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL----LK 414 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al----~~ 414 (710)
...++.|+.|+|||++.+++.+.+-..+..++-+-.+.. . -..+ ....+....|+...+...- .-
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgk-------A---A~~L-~e~~Gi~a~TIas~ll~~~~~~~~l 466 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGK-------A---AEGL-EKEAGIQSRTLSSWELRWNQGRDQL 466 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHH-------H---HHHH-HHhhCCCeeeHHHHHhhhccCccCC
Confidence 378999999999999999999877433333332211100 0 0000 0001111223222111110 01
Q ss_pred CCCeEEEEeccccCCHHHHHHHHhhHh
Q 005186 415 KPLSVVYLENVDKADVHVQNSLSKAIQ 441 (710)
Q Consensus 415 ~p~sVI~LDEIDKa~~~vqn~LLq~LE 441 (710)
.+..||||||+-.++...+..|++.++
T Consensus 467 ~~~~vlVIDEAsMv~~~~m~~Ll~~~~ 493 (1102)
T PRK13826 467 DNKTVFVLDEAGMVASRQMALFVEAVT 493 (1102)
T ss_pred CCCcEEEEECcccCCHHHHHHHHHHHH
Confidence 235699999999999999999999886
No 485
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.59 E-value=0.23 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
...++|+||+|+|||+|+++|.+.
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 358889999999999999999764
No 486
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=90.57 E-value=0.19 Score=48.76 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=18.0
Q ss_pred EEEecCCCCchhHHHHHHHHH
Q 005186 341 FNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~ 361 (710)
+.|+|++|+|||+|++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 487
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=90.55 E-value=0.34 Score=45.00 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=30.0
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
++|.|..|+|||+++..||..+-..+.+.+.+|+.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D 36 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 78999999999999999999886656677777776
No 488
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.54 E-value=0.58 Score=49.95 Aligned_cols=99 Identities=11% Similarity=0.044 Sum_probs=55.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcc-ccccccccccccccchhhHHHHHH---Hh
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAWEL---LK 414 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~-~~~~~G~~~~f~G~t~~~~L~~al---~~ 414 (710)
..++|+||+|+|||++++.|+..+.........+++..+.. .....+. .....|++.. ...+ ...+.+++ .+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri--~~~~ql~~~~~~~~~~~~-~~~~-~~~l~~~l~~l~~ 151 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRI--GTVQQLQDYVKTIGFEVI-AVRD-EAAMTRALTYFKE 151 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHHhhhcCceEE-ecCC-HHHHHHHHHHHHh
Confidence 48999999999999999999988765444444455543210 0000000 0111122111 0111 12233333 22
Q ss_pred -CCCeEEEEeccccCC--HHHHHHHHhhHh
Q 005186 415 -KPLSVVYLENVDKAD--VHVQNSLSKAIQ 441 (710)
Q Consensus 415 -~p~sVI~LDEIDKa~--~~vqn~LLq~LE 441 (710)
..+.+|+||-....+ ......|.++++
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 357899999999885 456666666665
No 489
>PRK01184 hypothetical protein; Provisional
Probab=90.53 E-value=0.26 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=18.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++++|++|+|||++|+ +++.+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHc
Confidence 68999999999999998 56554
No 490
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.50 E-value=0.28 Score=56.18 Aligned_cols=84 Identities=7% Similarity=0.011 Sum_probs=50.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcc-cccccccccc---ccccchhhHHHHHHHh
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQ---FRGKTLADYVAWELLK 414 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~-~~~~~G~~~~---f~G~t~~~~L~~al~~ 414 (710)
..+++.|++|+|||+++..++..+.....+.++++.-+... .+. ...-+|.... +...+....+.+.+.+
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~------qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQ------QIKMRAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHH------HHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 48999999999999999998876654445666665542100 000 0001111110 1111223566677777
Q ss_pred CCCeEEEEeccccC
Q 005186 415 KPLSVVYLENVDKA 428 (710)
Q Consensus 415 ~p~sVI~LDEIDKa 428 (710)
....+|+||.|.-+
T Consensus 169 ~~~~~vVIDSIq~l 182 (454)
T TIGR00416 169 ENPQACVIDSIQTL 182 (454)
T ss_pred cCCcEEEEecchhh
Confidence 66789999998754
No 491
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.49 E-value=0.23 Score=49.98 Aligned_cols=25 Identities=28% Similarity=0.135 Sum_probs=21.9
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...++|+||+|+||++|++.|.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3489999999999999999998754
No 492
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=90.46 E-value=0.33 Score=50.12 Aligned_cols=37 Identities=27% Similarity=0.190 Sum_probs=28.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
...+.+.|++|+|||++|+.|++.+-+....+|+.|.
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~ 44 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDD 44 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccc
Confidence 4689999999999999999999988433233444433
No 493
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=90.44 E-value=3.4 Score=45.07 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=19.6
Q ss_pred CCeEEEEecCCCCchhHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALA 359 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLA 359 (710)
....+++.|.+|+||+.++.+|-
T Consensus 37 ~~~rIllvGktGVGKSSliNsIl 59 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSII 59 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 34589999999999999988765
No 494
>PRK00698 tmk thymidylate kinase; Validated
Probab=90.41 E-value=0.22 Score=49.65 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..+.|.|++|+|||++++.|++.+-
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999873
No 495
>PF05609 LAP1C: Lamina-associated polypeptide 1C (LAP1C); InterPro: IPR008662 This entry contains Rattus norvegicus LAP1C proteins and several uncharacterised highly related sequences from both Mus sp. and humans. Lamina-associated polypeptide 1s (LAP1s), also known as Torsin-1A-interacting protein 1, are type 2 integral membrane proteins with a single membrane-spanning region of the inner nuclear membrane []. LAP1s bind to both A- and B-type lamins and have a putative role in the membrane attachment and assembly of the nuclear lamina [].
Probab=90.37 E-value=2.8 Score=47.99 Aligned_cols=147 Identities=10% Similarity=0.050 Sum_probs=89.6
Q ss_pred chHhHHHHHHHhcCcccccHHH-HHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhH--HHHHHHHHHcC-CC
Q 005186 291 DLSNWKTLFRALTEKIDWQDEA-ISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRK--IAIALAEIIYG-GK 366 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeA-i~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~--LAraLAe~L~g-s~ 366 (710)
-...|....+.|+..+.+|++- .+.+...+..+..+...+ ..+.+|||.+..+.=+|. ||..||.++.. ..
T Consensus 246 ~~~~f~~~~~~Lk~~fp~Q~~~lW~~~~~~l~~hln~~~pr-----~qPavlll~a~~~a~~tl~cLa~~lA~ays~~~~ 320 (465)
T PF05609_consen 246 ALENFQDQIEQLKDKFPSQDEELWKRSRTFLEKHLNASHPR-----TQPAVLLLTAAQDAERTLRCLAEQLADAYSSFRD 320 (465)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCCC-----CCCeEEEEecCCCcchHHHHHHHHHHHHHhhhcC
Confidence 4556778888899999999965 355555555553322221 246788888888766663 55555554421 12
Q ss_pred cceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCccc
Q 005186 367 ENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 446 (710)
Q Consensus 367 ~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~ 446 (710)
...+.||...... .+..-.-..+-..|...+.. ...+.++-.+|++++..--.|+++-|.-
T Consensus 321 ~~~~~Idg~~~~~---------------~dsd~vK~~vD~~l~~~f~~-~~~aavv~~~e~lpp~stlify~YCD~e--- 381 (465)
T PF05609_consen 321 VSAIRIDGADKAH---------------QDSDQVKLEVDNELSSGFEN-GQKAAVVHRFESLPPGSTLIFYKYCDHE--- 381 (465)
T ss_pred CceEEecCccccc---------------cChHHHHHHHHHHHHHHhhC-CCeeEEeehhhhCCCchhHHHHHhccCC---
Confidence 3456666653111 11110001111334555544 3456667999999999999999888632
Q ss_pred CCCCeEeecCceEEEEccCC
Q 005186 447 DSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 447 d~~Gr~vd~~n~I~IlTSN~ 466 (710)
...|+++.+|||--+
T Consensus 382 -----nA~fK~~alilTv~l 396 (465)
T PF05609_consen 382 -----NAAFKDVALILTVLL 396 (465)
T ss_pred -----CccccceEEEEEEEe
Confidence 356899999998765
No 496
>PLN02748 tRNA dimethylallyltransferase
Probab=90.27 E-value=0.26 Score=56.46 Aligned_cols=32 Identities=34% Similarity=0.392 Sum_probs=25.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
..+++.||+|+|||.||..||+.+ +..+|..|
T Consensus 23 ~~i~i~GptgsGKs~la~~la~~~---~~eii~~D 54 (468)
T PLN02748 23 KVVVVMGPTGSGKSKLAVDLASHF---PVEIINAD 54 (468)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc---CeeEEcCc
Confidence 378999999999999999999987 34455444
No 497
>PRK13768 GTPase; Provisional
Probab=90.22 E-value=0.34 Score=51.03 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=30.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.+++.|++|+|||+++..++..+...+.+.+.+|+..
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 6889999999999999999988865556666666653
No 498
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=90.00 E-value=1.1 Score=49.21 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcc--eEEecCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN--FICADLC 375 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~--fI~iD~s 375 (710)
....+.|.|++|+|||+++.+|...+-..+.+ ++.+|.+
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 95 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 45699999999999999999999888644444 4445544
No 499
>PF14516 AAA_35: AAA-like domain
Probab=89.99 E-value=2 Score=47.11 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=33.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ 377 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~ 377 (710)
.-+.+.||..+|||.+...+.+.+-..+...+.+|+...
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 378999999999999999998888766788889999863
No 500
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=89.99 E-value=1.1 Score=44.73 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEecCCCCchhHHHHHHHHHH
Q 005186 341 FNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L 362 (710)
++++||.|.|||++.+.|+-..
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~ 23 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIV 23 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999988433
Done!