Query 005186
Match_columns 710
No_of_seqs 291 out of 2564
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 18:01:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r6b_X CLPA protein; AAA+, N-t 100.0 4.8E-32 1.6E-36 319.8 30.2 294 290-691 444-738 (758)
2 1qvr_A CLPB protein; coiled co 100.0 4.7E-31 1.6E-35 315.6 28.6 297 291-691 545-842 (854)
3 4fcw_A Chaperone protein CLPB; 100.0 2.2E-30 7.4E-35 271.9 29.0 298 291-692 4-302 (311)
4 3pxi_A Negative regulator of g 100.0 2.4E-30 8.2E-35 305.7 27.6 269 291-691 478-747 (758)
5 3hws_A ATP-dependent CLP prote 99.9 8.2E-27 2.8E-31 252.2 11.9 291 293-675 4-329 (363)
6 1um8_A ATP-dependent CLP prote 99.9 2.5E-23 8.6E-28 225.7 19.6 292 291-675 8-346 (376)
7 1ofh_A ATP-dependent HSL prote 99.9 1.1E-20 3.7E-25 197.1 19.9 240 294-671 5-276 (310)
8 1g41_A Heat shock protein HSLU 99.9 8.3E-21 2.8E-25 210.9 19.5 260 294-674 5-413 (444)
9 1ojl_A Transcriptional regulat 99.8 1.4E-18 4.7E-23 184.3 13.3 144 304-466 2-146 (304)
10 2bjv_A PSP operon transcriptio 99.8 2.2E-18 7.6E-23 177.5 13.7 228 304-665 6-237 (265)
11 1ny5_A Transcriptional regulat 99.8 2.1E-18 7.2E-23 188.8 13.6 224 304-666 137-368 (387)
12 3m6a_A ATP-dependent protease 99.8 7E-18 2.4E-22 192.5 18.1 238 295-674 72-321 (543)
13 3dzd_A Transcriptional regulat 99.8 4.6E-18 1.6E-22 185.0 15.2 221 305-665 130-358 (368)
14 3syl_A Protein CBBX; photosynt 99.7 7E-17 2.4E-21 169.1 22.5 232 285-675 12-269 (309)
15 3pfi_A Holliday junction ATP-d 99.6 2.6E-14 8.8E-19 151.8 24.0 195 304-665 29-231 (338)
16 1hqc_A RUVB; extended AAA-ATPa 99.6 1.6E-13 5.5E-18 144.3 21.4 126 304-465 12-146 (324)
17 3pvs_A Replication-associated 99.5 2.9E-13 1E-17 150.9 17.8 189 304-666 26-220 (447)
18 3eie_A Vacuolar protein sortin 99.5 9.2E-13 3.1E-17 140.0 19.7 214 304-675 18-242 (322)
19 2qp9_X Vacuolar protein sortin 99.5 1.6E-12 5.6E-17 140.4 21.2 212 303-675 50-275 (355)
20 1g8p_A Magnesium-chelatase 38 99.5 6E-13 2E-17 141.2 16.4 146 304-466 24-196 (350)
21 1xwi_A SKD1 protein; VPS4B, AA 99.4 1.1E-11 3.7E-16 132.2 25.0 215 304-675 12-237 (322)
22 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 9.8E-13 3.3E-17 148.6 17.7 147 292-466 10-158 (500)
23 3vfd_A Spastin; ATPase, microt 99.4 2E-12 6.8E-17 140.9 19.6 136 304-466 115-261 (389)
24 3t15_A Ribulose bisphosphate c 99.4 1E-12 3.5E-17 138.3 16.6 135 309-466 12-164 (293)
25 3k1j_A LON protease, ATP-depen 99.4 2.4E-13 8.3E-18 156.8 12.6 56 304-374 41-96 (604)
26 3n70_A Transport activator; si 99.4 2.1E-13 7.3E-18 128.4 9.9 114 305-466 2-115 (145)
27 2r44_A Uncharacterized protein 99.4 5.4E-13 1.9E-17 141.5 12.6 138 293-465 16-158 (331)
28 3uk6_A RUVB-like 2; hexameric 99.4 5.2E-12 1.8E-16 135.3 20.1 225 303-667 43-309 (368)
29 2zan_A Vacuolar protein sortin 99.4 1.4E-11 4.9E-16 137.0 24.1 213 304-675 134-359 (444)
30 4b4t_J 26S protease regulatory 99.4 4.6E-12 1.6E-16 139.0 19.6 127 304-466 148-296 (405)
31 3d8b_A Fidgetin-like protein 1 99.4 1.1E-11 3.9E-16 133.7 21.6 149 291-466 63-230 (357)
32 3cf0_A Transitional endoplasmi 99.4 5.6E-12 1.9E-16 132.8 16.4 127 304-466 15-163 (301)
33 4b4t_I 26S protease regulatory 99.4 6.8E-12 2.3E-16 138.3 17.6 127 304-466 182-330 (437)
34 3co5_A Putative two-component 99.4 2.5E-13 8.4E-18 127.8 5.3 112 305-467 5-116 (143)
35 3b9p_A CG5977-PA, isoform A; A 99.4 2.5E-11 8.6E-16 126.4 21.0 137 304-466 21-168 (297)
36 2chg_A Replication factor C sm 99.4 2.3E-11 7.9E-16 118.6 19.1 118 304-466 17-141 (226)
37 3u61_B DNA polymerase accessor 99.4 6.4E-12 2.2E-16 132.7 15.9 115 304-466 26-145 (324)
38 2qz4_A Paraplegin; AAA+, SPG7, 99.4 3.5E-11 1.2E-15 122.4 20.6 137 304-466 6-154 (262)
39 1iqp_A RFCS; clamp loader, ext 99.4 2.2E-11 7.4E-16 127.4 19.2 118 304-466 25-149 (327)
40 4b4t_M 26S protease regulatory 99.4 1.3E-11 4.3E-16 137.0 18.0 127 304-466 181-329 (434)
41 4b4t_H 26S protease regulatory 99.3 2.9E-11 9.9E-16 134.5 20.7 127 304-466 209-357 (467)
42 3h4m_A Proteasome-activating n 99.3 1.7E-11 5.9E-16 126.7 16.4 138 304-466 17-165 (285)
43 2chq_A Replication factor C sm 99.3 1.9E-11 6.4E-16 127.4 16.6 118 304-466 17-141 (319)
44 4b4t_L 26S protease subunit RP 99.3 5.1E-11 1.7E-15 132.3 20.4 127 304-466 181-329 (437)
45 1d2n_A N-ethylmaleimide-sensit 99.3 3.9E-12 1.3E-16 131.3 10.8 134 300-466 29-176 (272)
46 2qby_B CDC6 homolog 3, cell di 99.3 4.2E-12 1.4E-16 136.2 11.4 139 303-466 19-173 (384)
47 3f9v_A Minichromosome maintena 99.3 2.8E-13 9.7E-18 156.1 1.6 156 292-466 283-443 (595)
48 3te6_A Regulatory protein SIR3 99.3 1.4E-11 4.9E-16 131.5 14.3 139 303-466 19-172 (318)
49 4b4t_K 26S protease regulatory 99.3 3.9E-11 1.3E-15 132.9 18.1 127 304-466 172-320 (428)
50 1sxj_D Activator 1 41 kDa subu 99.3 1.8E-11 6.2E-16 129.7 14.9 132 304-465 37-171 (353)
51 1lv7_A FTSH; alpha/beta domain 99.3 1.2E-10 3.9E-15 119.1 18.9 134 304-466 12-159 (257)
52 1fnn_A CDC6P, cell division co 99.3 8.1E-11 2.8E-15 126.1 18.6 143 304-466 17-168 (389)
53 1jr3_A DNA polymerase III subu 99.3 2.7E-10 9.3E-15 121.6 22.5 135 304-465 16-157 (373)
54 1sxj_B Activator 1 37 kDa subu 99.3 1E-10 3.6E-15 122.0 18.3 116 304-465 21-145 (323)
55 1njg_A DNA polymerase III subu 99.3 4E-10 1.4E-14 110.8 20.7 134 304-466 23-165 (250)
56 2c9o_A RUVB-like 1; hexameric 99.2 2E-10 6.7E-15 128.1 20.1 66 302-376 35-100 (456)
57 2v1u_A Cell division control p 99.2 2.5E-11 8.4E-16 129.6 12.0 145 303-466 18-176 (387)
58 1a5t_A Delta prime, HOLB; zinc 99.2 3.4E-10 1.2E-14 121.0 18.3 133 306-466 4-147 (334)
59 2ce7_A Cell division protein F 99.2 5.3E-10 1.8E-14 125.5 20.6 134 304-466 16-163 (476)
60 2r62_A Cell division protease 99.2 7.7E-12 2.6E-16 128.4 4.6 128 304-466 11-160 (268)
61 3hu3_A Transitional endoplasmi 99.2 1.1E-10 3.6E-15 131.7 14.0 135 304-466 204-349 (489)
62 1sxj_C Activator 1 40 kDa subu 99.2 3.5E-10 1.2E-14 120.7 16.4 117 304-466 25-149 (340)
63 1sxj_E Activator 1 40 kDa subu 99.1 6.9E-10 2.4E-14 118.1 17.7 138 304-466 14-173 (354)
64 1l8q_A Chromosomal replication 99.1 5.6E-10 1.9E-14 118.0 16.6 87 339-442 38-126 (324)
65 1sxj_A Activator 1 95 kDa subu 99.1 1.4E-09 4.9E-14 123.0 18.4 129 304-443 39-178 (516)
66 3bos_A Putative DNA replicatio 99.1 3.9E-10 1.3E-14 112.1 11.9 78 339-442 53-132 (242)
67 3pxg_A Negative regulator of g 99.1 3E-10 1E-14 127.2 12.3 114 304-466 180-300 (468)
68 1in4_A RUVB, holliday junction 99.1 9.7E-09 3.3E-13 109.7 23.4 105 304-444 25-130 (334)
69 2gno_A DNA polymerase III, gam 99.1 1.1E-09 3.6E-14 116.3 13.9 114 308-466 1-121 (305)
70 2qby_A CDC6 homolog 1, cell di 99.0 7.1E-10 2.4E-14 118.0 11.6 140 304-466 20-172 (386)
71 2z4s_A Chromosomal replication 99.0 2.3E-09 7.8E-14 119.1 15.7 66 592-668 246-313 (440)
72 2dhr_A FTSH; AAA+ protein, hex 99.0 1.7E-09 5.9E-14 122.0 14.6 132 303-466 30-178 (499)
73 2p65_A Hypothetical protein PF 99.0 4.1E-10 1.4E-14 107.2 6.6 128 297-466 15-161 (187)
74 3cf2_A TER ATPase, transitiona 99.0 3.2E-09 1.1E-13 125.7 14.7 135 304-466 204-349 (806)
75 1qvr_A CLPB protein; coiled co 99.0 6.3E-09 2.2E-13 124.6 16.7 121 303-465 169-307 (854)
76 1ixz_A ATP-dependent metallopr 98.9 1.8E-08 6.3E-13 102.6 16.8 131 304-465 16-162 (254)
77 1jbk_A CLPB protein; beta barr 98.9 1.4E-09 4.9E-14 103.4 7.5 123 302-466 20-160 (195)
78 1r6b_X CLPA protein; AAA+, N-t 98.9 6.3E-09 2.2E-13 122.7 14.3 123 303-465 185-323 (758)
79 3pxi_A Negative regulator of g 98.9 5.8E-09 2E-13 123.2 13.4 114 304-466 180-300 (758)
80 1iy2_A ATP-dependent metallopr 98.9 3.7E-08 1.3E-12 101.9 16.6 103 304-428 40-144 (278)
81 1ypw_A Transitional endoplasmi 98.9 3.2E-10 1.1E-14 135.0 0.8 135 304-466 477-625 (806)
82 3cf2_A TER ATPase, transitiona 98.8 2.4E-09 8.2E-14 126.8 7.2 136 304-467 477-626 (806)
83 3f8t_A Predicted ATPase involv 98.7 8.8E-09 3E-13 114.7 7.2 144 293-467 203-349 (506)
84 2x8a_A Nuclear valosin-contain 98.7 1.2E-07 4.1E-12 98.8 13.9 98 304-428 10-115 (274)
85 1w5s_A Origin recognition comp 98.6 1.2E-07 4.2E-12 102.2 11.7 146 303-465 21-187 (412)
86 1ypw_A Transitional endoplasmi 98.6 9.7E-08 3.3E-12 113.7 10.6 135 304-466 204-349 (806)
87 3ec2_A DNA replication protein 98.4 1.4E-06 4.9E-11 83.8 10.7 104 339-469 39-145 (180)
88 2w58_A DNAI, primosome compone 98.3 3E-07 1E-11 90.0 5.0 104 339-469 55-161 (202)
89 2qgz_A Helicase loader, putati 98.1 1.4E-06 4.7E-11 92.3 3.9 104 339-470 153-261 (308)
90 2kjq_A DNAA-related protein; s 98.0 8.4E-06 2.9E-10 77.2 8.1 89 340-468 38-126 (149)
91 4akg_A Glutathione S-transfera 97.9 3.7E-05 1.3E-09 101.1 13.5 117 340-467 1269-1394(2695)
92 1jr3_D DNA polymerase III, del 97.9 0.00014 4.9E-09 77.1 15.4 91 339-465 19-115 (343)
93 4akg_A Glutathione S-transfera 97.8 7.6E-05 2.6E-09 98.2 12.4 103 340-468 647-758 (2695)
94 1tue_A Replication protein E1; 97.7 5.3E-05 1.8E-09 76.0 7.6 26 339-364 59-84 (212)
95 1u0j_A DNA replication protein 97.6 8.3E-05 2.9E-09 77.3 6.8 93 339-467 105-200 (267)
96 3vkg_A Dynein heavy chain, cyt 97.4 0.00053 1.8E-08 91.2 12.3 104 340-469 606-719 (3245)
97 2fna_A Conserved hypothetical 97.2 0.00074 2.5E-08 70.5 9.1 53 304-376 13-65 (357)
98 2qen_A Walker-type ATPase; unk 97.2 0.00082 2.8E-08 70.1 9.4 52 304-375 12-63 (350)
99 3jvv_A Twitching mobility prot 97.2 0.00093 3.2E-08 72.2 9.9 97 337-443 122-221 (356)
100 3vkg_A Dynein heavy chain, cyt 97.2 4.8E-05 1.7E-09 100.8 -0.8 120 340-467 1306-1432(3245)
101 2eyu_A Twitching motility prot 97.1 0.0019 6.4E-08 66.7 10.7 95 338-442 25-122 (261)
102 3upu_A ATP-dependent DNA helic 97.1 0.0013 4.3E-08 73.1 10.0 106 307-441 28-153 (459)
103 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.001 3.5E-08 71.0 8.8 73 339-430 124-196 (331)
104 2ewv_A Twitching motility prot 96.8 0.0033 1.1E-07 68.1 9.9 96 338-443 136-234 (372)
105 2orw_A Thymidine kinase; TMTK, 96.8 0.00064 2.2E-08 66.4 3.5 98 340-442 5-102 (184)
106 2b8t_A Thymidine kinase; deoxy 96.6 0.0064 2.2E-07 61.4 9.3 98 339-441 13-114 (223)
107 1ye8_A Protein THEP1, hypothet 96.5 0.0049 1.7E-07 59.8 7.7 23 340-362 2-24 (178)
108 3kl4_A SRP54, signal recogniti 96.5 0.0059 2E-07 67.6 9.0 39 337-375 96-134 (433)
109 3dm5_A SRP54, signal recogniti 96.4 0.036 1.2E-06 61.5 14.3 40 337-376 99-138 (443)
110 2r8r_A Sensor protein; KDPD, P 96.3 0.0067 2.3E-07 61.5 7.3 40 336-375 4-43 (228)
111 3trf_A Shikimate kinase, SK; a 96.0 0.0048 1.6E-07 58.8 4.3 30 339-371 6-35 (185)
112 1qhx_A CPT, protein (chloramph 96.0 0.0047 1.6E-07 58.4 4.2 33 340-375 5-37 (178)
113 2a5y_B CED-4; apoptosis; HET: 95.8 0.045 1.5E-06 61.9 12.0 44 307-360 131-174 (549)
114 3cmw_A Protein RECA, recombina 95.8 0.012 4.1E-07 74.8 7.9 84 340-430 1084-1174(1706)
115 3vaa_A Shikimate kinase, SK; s 95.7 0.0068 2.3E-07 59.0 4.3 30 339-371 26-55 (199)
116 3kb2_A SPBC2 prophage-derived 95.7 0.0081 2.8E-07 56.1 4.6 23 340-362 3-25 (173)
117 3e1s_A Exodeoxyribonuclease V, 95.7 0.018 6E-07 66.0 8.2 89 340-443 206-306 (574)
118 2i3b_A HCR-ntpase, human cance 95.6 0.0062 2.1E-07 59.7 3.6 24 340-363 3-26 (189)
119 2rhm_A Putative kinase; P-loop 95.6 0.01 3.4E-07 56.7 4.8 32 338-372 5-36 (193)
120 3iij_A Coilin-interacting nucl 95.5 0.01 3.6E-07 56.4 4.5 24 339-362 12-35 (180)
121 3b9q_A Chloroplast SRP recepto 95.5 0.036 1.2E-06 58.2 9.1 27 337-363 99-125 (302)
122 1xx6_A Thymidine kinase; NESG, 95.4 0.012 4.3E-07 57.8 5.0 99 339-442 9-107 (191)
123 1via_A Shikimate kinase; struc 95.4 0.009 3.1E-07 56.7 3.8 23 340-362 6-28 (175)
124 2ze6_A Isopentenyl transferase 95.4 0.011 3.6E-07 60.4 4.6 32 340-374 3-34 (253)
125 2r2a_A Uncharacterized protein 95.4 0.022 7.7E-07 56.3 6.7 37 339-375 6-48 (199)
126 1zuh_A Shikimate kinase; alpha 95.4 0.01 3.6E-07 55.7 4.1 30 339-371 8-37 (168)
127 1gvn_B Zeta; postsegregational 95.4 0.031 1.1E-06 58.2 8.0 35 338-375 33-67 (287)
128 2pt7_A CAG-ALFA; ATPase, prote 95.3 0.025 8.5E-07 60.2 7.1 92 340-443 173-264 (330)
129 1zu4_A FTSY; GTPase, signal re 95.3 0.038 1.3E-06 58.6 8.4 40 337-376 104-143 (320)
130 2iyv_A Shikimate kinase, SK; t 95.2 0.011 3.8E-07 56.3 3.9 29 340-371 4-32 (184)
131 1kag_A SKI, shikimate kinase I 95.2 0.011 3.7E-07 55.7 3.5 23 340-362 6-28 (173)
132 2og2_A Putative signal recogni 95.1 0.053 1.8E-06 58.6 9.2 27 337-363 156-182 (359)
133 2c95_A Adenylate kinase 1; tra 95.1 0.014 4.9E-07 55.7 4.3 24 339-362 10-33 (196)
134 2cdn_A Adenylate kinase; phosp 95.1 0.016 5.5E-07 56.2 4.7 32 338-372 20-51 (201)
135 1aky_A Adenylate kinase; ATP:A 95.1 0.015 5E-07 57.4 4.3 25 338-362 4-28 (220)
136 1e6c_A Shikimate kinase; phosp 95.1 0.013 4.6E-07 54.9 3.8 23 340-362 4-26 (173)
137 3t61_A Gluconokinase; PSI-biol 95.0 0.017 6E-07 56.0 4.7 24 339-362 19-42 (202)
138 1nks_A Adenylate kinase; therm 95.0 0.017 5.7E-07 54.9 4.4 35 340-374 3-37 (194)
139 2j37_W Signal recognition part 95.0 0.21 7E-06 56.3 13.9 39 337-375 100-138 (504)
140 1tev_A UMP-CMP kinase; ploop, 95.0 0.017 5.7E-07 55.0 4.3 24 339-362 4-27 (196)
141 2p5t_B PEZT; postsegregational 95.0 0.041 1.4E-06 55.8 7.3 37 337-376 31-67 (253)
142 1kht_A Adenylate kinase; phosp 94.9 0.014 4.8E-07 55.4 3.3 23 340-362 5-27 (192)
143 3cmu_A Protein RECA, recombina 94.9 0.042 1.4E-06 70.9 8.5 83 339-428 1428-1517(2050)
144 2pt5_A Shikimate kinase, SK; a 94.8 0.019 6.3E-07 53.7 4.1 23 340-362 2-24 (168)
145 3lw7_A Adenylate kinase relate 94.8 0.016 5.4E-07 53.7 3.5 22 340-362 3-24 (179)
146 1zp6_A Hypothetical protein AT 94.8 0.015 5.2E-07 55.5 3.3 34 339-375 10-43 (191)
147 3uie_A Adenylyl-sulfate kinase 94.8 0.023 8E-07 55.2 4.7 26 338-363 25-50 (200)
148 3e70_C DPA, signal recognition 94.8 0.062 2.1E-06 57.2 8.3 29 337-365 128-156 (328)
149 3cm0_A Adenylate kinase; ATP-b 94.7 0.017 5.8E-07 54.9 3.5 24 339-362 5-28 (186)
150 1knq_A Gluconate kinase; ALFA/ 94.7 0.031 1.1E-06 52.7 5.3 24 339-362 9-32 (175)
151 1y63_A LMAJ004144AAA protein; 94.7 0.017 5.9E-07 55.5 3.5 24 339-362 11-34 (184)
152 2bwj_A Adenylate kinase 5; pho 94.7 0.018 6.2E-07 55.2 3.7 23 340-362 14-36 (199)
153 1rz3_A Hypothetical protein rb 94.6 0.037 1.3E-06 54.0 5.8 38 338-375 22-59 (201)
154 2yhs_A FTSY, cell division pro 94.6 0.057 1.9E-06 60.7 8.0 28 337-364 292-319 (503)
155 3a8t_A Adenylate isopentenyltr 94.6 0.016 5.6E-07 62.1 3.3 34 339-375 41-74 (339)
156 1qf9_A UMP/CMP kinase, protein 94.6 0.022 7.6E-07 54.0 4.0 24 339-362 7-30 (194)
157 1vma_A Cell division protein F 94.6 0.095 3.3E-06 55.2 9.2 39 337-375 103-141 (306)
158 3tlx_A Adenylate kinase 2; str 94.5 0.053 1.8E-06 54.7 6.9 25 338-362 29-53 (243)
159 3fb4_A Adenylate kinase; psych 94.5 0.024 8.1E-07 55.5 4.1 23 340-362 2-24 (216)
160 3c8u_A Fructokinase; YP_612366 94.5 0.033 1.1E-06 54.5 5.2 26 338-363 22-47 (208)
161 2fz4_A DNA repair protein RAD2 94.5 0.052 1.8E-06 54.6 6.7 23 340-362 110-132 (237)
162 1w36_D RECD, exodeoxyribonucle 94.5 0.17 5.8E-06 58.2 11.8 26 416-441 262-287 (608)
163 2pez_A Bifunctional 3'-phospho 94.5 0.03 1E-06 53.2 4.6 37 339-375 6-42 (179)
164 1j8m_F SRP54, signal recogniti 94.4 0.091 3.1E-06 55.1 8.6 39 338-376 98-136 (297)
165 1ukz_A Uridylate kinase; trans 94.4 0.027 9.3E-07 54.4 4.2 25 338-362 15-39 (203)
166 1ak2_A Adenylate kinase isoenz 94.4 0.029 9.8E-07 56.0 4.4 24 339-362 17-40 (233)
167 1zd8_A GTP:AMP phosphotransfer 94.4 0.022 7.6E-07 56.4 3.5 24 339-362 8-31 (227)
168 2xxa_A Signal recognition part 94.3 0.074 2.5E-06 58.8 8.0 40 337-376 99-139 (433)
169 2yvu_A Probable adenylyl-sulfa 94.3 0.036 1.2E-06 53.0 4.8 37 338-374 13-49 (186)
170 3be4_A Adenylate kinase; malar 94.3 0.024 8.3E-07 55.9 3.7 24 339-362 6-29 (217)
171 3dl0_A Adenylate kinase; phosp 94.3 0.024 8.2E-07 55.5 3.6 23 340-362 2-24 (216)
172 4eun_A Thermoresistant glucoki 94.3 0.035 1.2E-06 53.9 4.7 24 339-362 30-53 (200)
173 3crm_A TRNA delta(2)-isopenten 94.3 0.026 8.9E-07 60.1 4.0 32 340-374 7-38 (323)
174 1g5t_A COB(I)alamin adenosyltr 94.2 0.1 3.4E-06 51.7 7.9 36 338-373 28-63 (196)
175 1p9r_A General secretion pathw 94.2 0.18 6.2E-06 55.4 10.6 95 338-443 167-261 (418)
176 1zak_A Adenylate kinase; ATP:A 94.2 0.019 6.6E-07 56.6 2.6 24 339-362 6-29 (222)
177 3a4m_A L-seryl-tRNA(SEC) kinas 94.1 0.037 1.3E-06 56.4 4.7 37 339-375 5-41 (260)
178 1e4v_A Adenylate kinase; trans 94.1 0.032 1.1E-06 54.7 4.0 23 340-362 2-24 (214)
179 1ly1_A Polynucleotide kinase; 94.1 0.029 9.8E-07 52.7 3.5 22 340-361 4-25 (181)
180 2j9r_A Thymidine kinase; TK1, 94.1 0.031 1E-06 56.2 3.8 99 340-443 30-128 (214)
181 2pbr_A DTMP kinase, thymidylat 94.0 0.035 1.2E-06 52.8 4.0 34 340-373 2-35 (195)
182 2vli_A Antibiotic resistance p 94.0 0.027 9.2E-07 53.3 3.1 24 339-362 6-29 (183)
183 2jaq_A Deoxyguanosine kinase; 93.7 0.044 1.5E-06 52.4 4.2 23 340-362 2-24 (205)
184 2xb4_A Adenylate kinase; ATP-b 93.7 0.039 1.3E-06 54.8 3.8 23 340-362 2-24 (223)
185 3foz_A TRNA delta(2)-isopenten 93.7 0.047 1.6E-06 57.9 4.5 34 339-375 11-44 (316)
186 2ffh_A Protein (FFH); SRP54, s 93.7 0.19 6.4E-06 55.5 9.5 40 337-376 97-136 (425)
187 2v3c_C SRP54, signal recogniti 93.6 0.097 3.3E-06 57.8 7.2 39 338-376 99-137 (432)
188 2if2_A Dephospho-COA kinase; a 93.6 0.038 1.3E-06 53.5 3.4 22 340-362 3-24 (204)
189 3nwj_A ATSK2; P loop, shikimat 93.6 0.058 2E-06 55.2 5.0 43 308-362 30-72 (250)
190 2plr_A DTMP kinase, probable t 93.6 0.045 1.5E-06 52.7 3.9 24 339-362 5-28 (213)
191 3hr8_A Protein RECA; alpha and 93.5 0.19 6.4E-06 54.2 9.1 37 339-375 62-98 (356)
192 2qor_A Guanylate kinase; phosp 93.5 0.037 1.3E-06 53.9 3.2 25 338-362 12-36 (204)
193 1rj9_A FTSY, signal recognitio 93.5 0.072 2.5E-06 56.1 5.6 36 338-373 102-137 (304)
194 3tqc_A Pantothenate kinase; bi 93.5 0.13 4.5E-06 54.6 7.6 27 337-363 91-117 (321)
195 2v54_A DTMP kinase, thymidylat 93.3 0.053 1.8E-06 52.1 4.0 32 339-372 5-36 (204)
196 1cke_A CK, MSSA, protein (cyti 93.3 0.053 1.8E-06 53.2 4.0 24 339-362 6-29 (227)
197 1nn5_A Similar to deoxythymidy 93.3 0.051 1.7E-06 52.6 3.8 24 339-362 10-33 (215)
198 1kgd_A CASK, peripheral plasma 93.3 0.04 1.4E-06 52.7 3.0 23 340-362 7-29 (180)
199 2z0h_A DTMP kinase, thymidylat 93.3 0.056 1.9E-06 51.6 4.0 31 340-370 2-32 (197)
200 1odf_A YGR205W, hypothetical 3 93.2 0.13 4.4E-06 53.7 7.0 27 337-363 30-56 (290)
201 1m7g_A Adenylylsulfate kinase; 93.2 0.059 2E-06 52.8 4.1 37 339-375 26-63 (211)
202 3ake_A Cytidylate kinase; CMP 93.2 0.06 2.1E-06 51.8 4.1 23 340-362 4-26 (208)
203 2wwf_A Thymidilate kinase, put 93.2 0.056 1.9E-06 52.3 3.9 24 339-362 11-34 (212)
204 2zr9_A Protein RECA, recombina 93.1 0.068 2.3E-06 57.3 4.8 36 340-375 63-98 (349)
205 3d3q_A TRNA delta(2)-isopenten 93.1 0.053 1.8E-06 58.1 4.0 23 340-362 9-31 (340)
206 3exa_A TRNA delta(2)-isopenten 93.1 0.046 1.6E-06 58.1 3.4 31 340-373 5-35 (322)
207 3sr0_A Adenylate kinase; phosp 93.1 0.068 2.3E-06 53.0 4.5 23 340-362 2-24 (206)
208 3tau_A Guanylate kinase, GMP k 93.1 0.055 1.9E-06 53.1 3.8 24 339-362 9-32 (208)
209 3tr0_A Guanylate kinase, GMP k 93.1 0.052 1.8E-06 52.2 3.5 24 339-362 8-31 (205)
210 2bbw_A Adenylate kinase 4, AK4 93.0 0.058 2E-06 54.2 3.8 24 339-362 28-51 (246)
211 3eph_A TRNA isopentenyltransfe 93.0 0.068 2.3E-06 58.6 4.6 33 339-374 3-35 (409)
212 2px0_A Flagellar biosynthesis 93.0 0.2 7E-06 52.3 8.1 39 338-376 105-144 (296)
213 2bdt_A BH3686; alpha-beta prot 92.9 0.053 1.8E-06 51.8 3.2 23 340-362 4-26 (189)
214 2ga8_A Hypothetical 39.9 kDa p 92.8 0.11 3.8E-06 56.0 5.9 30 339-371 25-54 (359)
215 3umf_A Adenylate kinase; rossm 92.7 0.089 3.1E-06 52.7 4.7 33 338-375 29-61 (217)
216 2j41_A Guanylate kinase; GMP, 92.7 0.052 1.8E-06 52.3 2.9 24 339-362 7-30 (207)
217 1jjv_A Dephospho-COA kinase; P 92.7 0.057 1.9E-06 52.4 3.1 21 340-360 4-24 (206)
218 1vht_A Dephospho-COA kinase; s 92.5 0.083 2.8E-06 51.7 4.1 22 339-360 5-26 (218)
219 3a00_A Guanylate kinase, GMP k 92.5 0.056 1.9E-06 51.9 2.7 23 340-362 3-25 (186)
220 1u94_A RECA protein, recombina 92.4 0.2 6.7E-06 53.9 7.2 37 339-375 64-100 (356)
221 2w0m_A SSO2452; RECA, SSPF, un 92.4 0.076 2.6E-06 51.6 3.7 36 339-374 24-59 (235)
222 2grj_A Dephospho-COA kinase; T 92.4 0.089 3E-06 51.5 4.1 25 338-362 12-36 (192)
223 1uf9_A TT1252 protein; P-loop, 92.4 0.082 2.8E-06 50.6 3.8 24 338-361 8-31 (203)
224 1lvg_A Guanylate kinase, GMP k 92.3 0.068 2.3E-06 52.1 3.2 23 340-362 6-28 (198)
225 3asz_A Uridine kinase; cytidin 92.3 0.084 2.9E-06 51.3 3.8 25 338-362 6-30 (211)
226 1uj2_A Uridine-cytidine kinase 92.3 0.1 3.5E-06 52.7 4.5 25 338-362 22-46 (252)
227 2gza_A Type IV secretion syste 92.3 0.22 7.4E-06 53.5 7.3 94 340-443 177-276 (361)
228 3r20_A Cytidylate kinase; stru 92.2 0.095 3.2E-06 53.2 4.2 25 338-362 9-33 (233)
229 1xp8_A RECA protein, recombina 92.1 0.23 7.7E-06 53.7 7.3 36 340-375 76-111 (366)
230 1qzm_A ATP-dependent protease 92.1 0.59 2E-05 40.9 8.5 67 607-674 3-71 (94)
231 2oap_1 GSPE-2, type II secreti 91.9 0.43 1.5E-05 53.7 9.6 94 340-444 262-358 (511)
232 1htw_A HI0065; nucleotide-bind 91.8 0.13 4.4E-06 48.8 4.3 24 339-362 34-57 (158)
233 4b3f_X DNA-binding protein smu 91.7 0.39 1.3E-05 55.4 9.0 69 340-434 207-275 (646)
234 1znw_A Guanylate kinase, GMP k 91.6 0.091 3.1E-06 51.3 3.1 24 339-362 21-44 (207)
235 1gtv_A TMK, thymidylate kinase 91.5 0.058 2E-06 52.3 1.7 23 340-362 2-24 (214)
236 2dr3_A UPF0273 protein PH0284; 91.2 0.16 5.3E-06 50.1 4.4 37 339-375 24-60 (247)
237 2qmh_A HPR kinase/phosphorylas 91.2 0.1 3.5E-06 52.0 3.0 33 339-375 35-67 (205)
238 3aez_A Pantothenate kinase; tr 91.1 0.31 1.1E-05 51.3 6.9 27 337-363 89-115 (312)
239 4e22_A Cytidylate kinase; P-lo 91.1 0.15 5.1E-06 51.7 4.3 24 339-362 28-51 (252)
240 3p32_A Probable GTPase RV1496/ 91.0 0.36 1.2E-05 51.5 7.4 38 338-375 79-116 (355)
241 2h92_A Cytidylate kinase; ross 90.9 0.13 4.5E-06 50.2 3.5 24 339-362 4-27 (219)
242 2ehv_A Hypothetical protein PH 90.9 0.14 4.9E-06 50.5 3.8 22 339-360 31-52 (251)
243 4a74_A DNA repair and recombin 90.8 0.18 6.2E-06 49.0 4.5 24 339-362 26-49 (231)
244 1svm_A Large T antigen; AAA+ f 90.7 0.28 9.4E-06 53.3 6.1 24 339-362 170-193 (377)
245 1ex7_A Guanylate kinase; subst 90.7 0.12 4.2E-06 50.5 3.0 23 340-362 3-25 (186)
246 2orv_A Thymidine kinase; TP4A 90.7 0.5 1.7E-05 48.0 7.6 95 339-442 20-114 (234)
247 1q3t_A Cytidylate kinase; nucl 90.7 0.19 6.5E-06 50.0 4.5 24 339-362 17-40 (236)
248 2jeo_A Uridine-cytidine kinase 90.6 0.17 5.8E-06 50.8 4.1 24 339-362 26-49 (245)
249 3ney_A 55 kDa erythrocyte memb 90.6 0.14 4.8E-06 50.6 3.4 24 339-362 20-43 (197)
250 1z6g_A Guanylate kinase; struc 90.6 0.12 4.2E-06 51.1 3.0 23 340-362 25-47 (218)
251 3cmu_A Protein RECA, recombina 90.5 0.5 1.7E-05 61.1 9.1 84 339-430 1082-1173(2050)
252 1sq5_A Pantothenate kinase; P- 90.5 0.24 8.2E-06 51.8 5.3 26 338-363 80-105 (308)
253 1n0w_A DNA repair protein RAD5 90.5 0.22 7.5E-06 49.0 4.7 37 339-375 25-67 (243)
254 4eaq_A DTMP kinase, thymidylat 90.4 0.28 9.7E-06 49.1 5.5 25 339-363 27-51 (229)
255 3kta_A Chromosome segregation 90.4 0.17 5.9E-06 47.8 3.8 26 339-364 27-52 (182)
256 2qt1_A Nicotinamide riboside k 90.3 0.16 5.5E-06 49.2 3.5 26 337-362 20-45 (207)
257 1s96_A Guanylate kinase, GMP k 90.3 0.15 5.1E-06 50.9 3.3 24 339-362 17-40 (219)
258 2cvh_A DNA repair and recombin 90.2 0.18 6.1E-06 48.8 3.8 34 339-375 21-54 (220)
259 1ls1_A Signal recognition part 90.2 0.71 2.4E-05 48.1 8.6 38 338-375 98-135 (295)
260 2f6r_A COA synthase, bifunctio 90.2 0.21 7.1E-06 51.6 4.4 23 338-360 75-97 (281)
261 1w4r_A Thymidine kinase; type 90.1 0.26 8.7E-06 48.8 4.7 95 340-443 22-117 (195)
262 4gp7_A Metallophosphoesterase; 90.1 0.2 6.7E-06 47.5 3.8 20 339-358 10-29 (171)
263 1ltq_A Polynucleotide kinase; 89.8 0.17 5.9E-06 51.9 3.5 24 339-362 3-26 (301)
264 3lnc_A Guanylate kinase, GMP k 89.8 0.11 3.9E-06 51.4 2.0 24 339-362 28-52 (231)
265 1x6v_B Bifunctional 3'-phospho 89.6 0.23 8E-06 57.4 4.6 36 339-374 53-88 (630)
266 2wsm_A Hydrogenase expression/ 89.5 0.63 2.1E-05 45.1 7.1 25 339-363 31-55 (221)
267 1yrb_A ATP(GTP)binding protein 89.5 0.43 1.5E-05 47.6 6.0 40 336-376 12-51 (262)
268 1z6t_A APAF-1, apoptotic prote 89.4 0.26 9E-06 55.6 4.8 45 305-360 125-169 (591)
269 1a7j_A Phosphoribulokinase; tr 89.4 0.17 5.7E-06 52.7 2.9 38 339-376 6-43 (290)
270 3zvl_A Bifunctional polynucleo 89.4 0.13 4.6E-06 56.2 2.3 25 338-362 258-282 (416)
271 1xjc_A MOBB protein homolog; s 88.9 0.34 1.2E-05 46.7 4.5 26 339-364 5-30 (169)
272 4edh_A DTMP kinase, thymidylat 88.7 0.35 1.2E-05 48.0 4.6 27 339-365 7-33 (213)
273 1nlf_A Regulatory protein REPA 88.6 0.37 1.3E-05 49.2 4.9 25 339-363 31-55 (279)
274 3cio_A ETK, tyrosine-protein k 88.4 0.79 2.7E-05 47.7 7.3 38 339-376 105-143 (299)
275 1cr0_A DNA primase/helicase; R 88.1 0.38 1.3E-05 49.4 4.6 35 339-373 36-71 (296)
276 2v9p_A Replication protein E1; 87.8 0.33 1.1E-05 51.1 3.9 24 339-362 127-150 (305)
277 1m8p_A Sulfate adenylyltransfe 87.8 0.35 1.2E-05 55.3 4.5 38 338-375 396-434 (573)
278 3fdi_A Uncharacterized protein 87.8 0.34 1.2E-05 47.5 3.8 29 339-370 7-35 (201)
279 3bfv_A CAPA1, CAPB2, membrane 87.6 0.81 2.8E-05 46.9 6.7 38 339-376 83-121 (271)
280 3b85_A Phosphate starvation-in 87.5 0.28 9.7E-06 48.5 3.1 22 340-361 24-45 (208)
281 4ag6_A VIRB4 ATPase, type IV s 87.5 0.41 1.4E-05 51.5 4.6 38 338-375 35-72 (392)
282 2onk_A Molybdate/tungstate ABC 87.4 0.3 1E-05 49.4 3.3 24 339-362 25-48 (240)
283 3hjn_A DTMP kinase, thymidylat 87.3 0.4 1.4E-05 46.9 4.0 30 341-370 3-32 (197)
284 3la6_A Tyrosine-protein kinase 87.3 1.1 3.9E-05 46.3 7.6 58 310-376 73-131 (286)
285 3tif_A Uncharacterized ABC tra 87.2 0.28 9.7E-06 49.3 2.9 24 339-362 32-55 (235)
286 3cmw_A Protein RECA, recombina 87.2 0.75 2.6E-05 58.7 7.3 84 339-429 733-823 (1706)
287 1f2t_A RAD50 ABC-ATPase; DNA d 87.2 0.44 1.5E-05 44.4 4.0 28 338-365 23-50 (149)
288 1g8f_A Sulfate adenylyltransfe 87.0 0.8 2.7E-05 51.6 6.7 25 339-363 396-420 (511)
289 2pcj_A ABC transporter, lipopr 86.9 0.26 8.8E-06 49.2 2.4 23 340-362 32-54 (224)
290 2f1r_A Molybdopterin-guanine d 86.7 0.26 8.8E-06 47.4 2.1 24 340-363 4-27 (171)
291 1tq4_A IIGP1, interferon-induc 86.6 0.67 2.3E-05 50.9 5.6 42 310-362 52-93 (413)
292 2ocp_A DGK, deoxyguanosine kin 86.5 0.37 1.3E-05 48.0 3.3 24 339-362 3-26 (241)
293 3e2i_A Thymidine kinase; Zn-bi 86.4 0.49 1.7E-05 47.5 4.1 99 339-443 29-128 (219)
294 3gmt_A Adenylate kinase; ssgci 86.4 0.38 1.3E-05 48.7 3.3 24 339-362 9-32 (230)
295 2ged_A SR-beta, signal recogni 86.3 0.6 2E-05 43.9 4.5 25 337-361 47-71 (193)
296 1b0u_A Histidine permease; ABC 86.3 0.34 1.2E-05 49.6 2.9 24 339-362 33-56 (262)
297 3v9p_A DTMP kinase, thymidylat 86.2 0.35 1.2E-05 48.7 3.0 25 339-363 26-50 (227)
298 2cbz_A Multidrug resistance-as 86.1 0.35 1.2E-05 48.7 2.9 24 339-362 32-55 (237)
299 1p5z_B DCK, deoxycytidine kina 86.1 0.17 6E-06 51.2 0.6 26 337-362 23-48 (263)
300 2z43_A DNA repair and recombin 86.0 0.61 2.1E-05 49.0 4.8 37 339-375 108-150 (324)
301 2d2e_A SUFC protein; ABC-ATPas 85.9 0.38 1.3E-05 48.8 3.1 22 340-361 31-52 (250)
302 2iut_A DNA translocase FTSK; n 85.9 1.6 5.5E-05 49.8 8.4 38 339-376 215-256 (574)
303 3gfo_A Cobalt import ATP-bindi 85.9 0.32 1.1E-05 50.3 2.5 23 340-362 36-58 (275)
304 3sop_A Neuronal-specific septi 85.8 0.44 1.5E-05 49.0 3.5 24 340-363 4-27 (270)
305 3bh0_A DNAB-like replicative h 85.8 0.73 2.5E-05 48.3 5.2 37 339-375 69-105 (315)
306 1np6_A Molybdopterin-guanine d 85.7 0.49 1.7E-05 45.6 3.5 25 339-363 7-31 (174)
307 1g6h_A High-affinity branched- 85.6 0.34 1.2E-05 49.4 2.6 23 340-362 35-57 (257)
308 1ji0_A ABC transporter; ATP bi 85.5 0.35 1.2E-05 48.8 2.6 23 340-362 34-56 (240)
309 2zu0_C Probable ATP-dependent 85.5 0.46 1.6E-05 48.8 3.4 23 339-361 47-69 (267)
310 3fvq_A Fe(3+) IONS import ATP- 85.4 0.38 1.3E-05 51.8 2.9 24 339-362 31-54 (359)
311 1mv5_A LMRA, multidrug resista 85.4 0.42 1.4E-05 48.2 3.0 24 339-362 29-52 (243)
312 2axn_A 6-phosphofructo-2-kinas 85.3 0.52 1.8E-05 53.2 4.1 25 338-362 35-59 (520)
313 4g1u_C Hemin import ATP-bindin 85.3 0.36 1.2E-05 49.7 2.5 24 339-362 38-61 (266)
314 1lw7_A Transcriptional regulat 85.3 0.4 1.4E-05 51.2 3.0 24 339-362 171-194 (365)
315 2olj_A Amino acid ABC transpor 85.2 0.41 1.4E-05 49.2 2.9 24 339-362 51-74 (263)
316 3cr8_A Sulfate adenylyltranfer 85.2 0.39 1.3E-05 54.7 3.0 25 339-363 370-394 (552)
317 1bif_A 6-phosphofructo-2-kinas 85.1 0.62 2.1E-05 51.5 4.6 36 338-373 39-74 (469)
318 2p67_A LAO/AO transport system 85.1 1.4 4.7E-05 46.7 7.1 26 338-363 56-81 (341)
319 1v5w_A DMC1, meiotic recombina 85.0 0.84 2.9E-05 48.4 5.3 37 339-375 123-165 (343)
320 3qf7_A RAD50; ABC-ATPase, ATPa 84.9 0.59 2E-05 50.1 4.1 27 339-365 24-50 (365)
321 2ff7_A Alpha-hemolysin translo 84.9 0.39 1.3E-05 48.7 2.6 23 340-362 37-59 (247)
322 2pze_A Cystic fibrosis transme 84.8 0.4 1.4E-05 48.0 2.5 23 340-362 36-58 (229)
323 1sgw_A Putative ABC transporte 84.8 0.36 1.2E-05 48.1 2.2 23 340-362 37-59 (214)
324 3lv8_A DTMP kinase, thymidylat 84.6 0.5 1.7E-05 47.8 3.2 25 339-363 28-52 (236)
325 4hlc_A DTMP kinase, thymidylat 84.5 0.54 1.8E-05 46.3 3.3 23 341-363 5-27 (205)
326 2qi9_C Vitamin B12 import ATP- 84.5 0.41 1.4E-05 48.7 2.5 23 340-362 28-50 (249)
327 2ghi_A Transport protein; mult 84.5 0.47 1.6E-05 48.5 2.9 24 339-362 47-70 (260)
328 2ihy_A ABC transporter, ATP-bi 84.5 0.41 1.4E-05 49.6 2.5 23 340-362 49-71 (279)
329 2jlq_A Serine protease subunit 84.5 1.9 6.5E-05 47.3 8.1 24 339-362 20-45 (451)
330 2f9l_A RAB11B, member RAS onco 84.4 0.51 1.7E-05 45.1 3.0 24 339-362 6-29 (199)
331 1oix_A RAS-related protein RAB 84.4 0.49 1.7E-05 45.1 2.9 25 339-363 30-54 (191)
332 2ixe_A Antigen peptide transpo 84.3 0.48 1.6E-05 48.8 2.9 24 339-362 46-69 (271)
333 1z47_A CYSA, putative ABC-tran 84.3 0.49 1.7E-05 50.9 3.1 23 340-362 43-65 (355)
334 1vpl_A ABC transporter, ATP-bi 84.2 0.48 1.7E-05 48.4 2.9 24 339-362 42-65 (256)
335 2yz2_A Putative ABC transporte 84.2 0.49 1.7E-05 48.5 2.9 24 339-362 34-57 (266)
336 4tmk_A Protein (thymidylate ki 84.1 0.55 1.9E-05 46.7 3.2 24 340-363 5-28 (213)
337 2nq2_C Hypothetical ABC transp 84.0 0.45 1.6E-05 48.5 2.6 23 340-362 33-55 (253)
338 1nrj_B SR-beta, signal recogni 83.9 0.66 2.3E-05 44.7 3.6 27 337-363 11-37 (218)
339 2it1_A 362AA long hypothetical 83.9 0.57 1.9E-05 50.5 3.4 24 339-362 30-53 (362)
340 2zts_A Putative uncharacterize 83.9 0.7 2.4E-05 45.3 3.9 36 339-374 31-67 (251)
341 3vkw_A Replicase large subunit 83.9 2.1 7.3E-05 47.3 8.1 95 337-442 160-260 (446)
342 2gks_A Bifunctional SAT/APS ki 83.8 0.73 2.5E-05 52.3 4.5 37 339-375 373-409 (546)
343 3ld9_A DTMP kinase, thymidylat 83.8 0.76 2.6E-05 46.1 4.1 26 338-363 21-46 (223)
344 2yyz_A Sugar ABC transporter, 83.8 0.58 2E-05 50.4 3.5 24 339-362 30-53 (359)
345 3rlf_A Maltose/maltodextrin im 83.7 0.58 2E-05 50.8 3.4 24 339-362 30-53 (381)
346 1upt_A ARL1, ADP-ribosylation 83.7 0.83 2.8E-05 41.7 4.0 24 337-360 6-29 (171)
347 3tmk_A Thymidylate kinase; pho 83.6 0.76 2.6E-05 45.8 4.0 24 339-362 6-29 (216)
348 3hdt_A Putative kinase; struct 83.5 0.79 2.7E-05 45.9 4.1 24 339-362 15-38 (223)
349 1v43_A Sugar-binding transport 83.5 0.61 2.1E-05 50.5 3.4 24 339-362 38-61 (372)
350 1g29_1 MALK, maltose transport 83.4 0.55 1.9E-05 50.8 3.1 23 340-362 31-53 (372)
351 3qks_A DNA double-strand break 83.4 0.75 2.6E-05 45.0 3.8 27 338-364 23-49 (203)
352 3tqf_A HPR(Ser) kinase; transf 83.4 0.59 2E-05 45.6 2.9 22 339-360 17-38 (181)
353 3ug7_A Arsenical pump-driving 83.2 0.89 3E-05 48.4 4.6 39 338-376 26-64 (349)
354 2vp4_A Deoxynucleoside kinase; 83.1 0.46 1.6E-05 47.2 2.1 24 338-361 20-43 (230)
355 3d31_A Sulfate/molybdate ABC t 83.1 0.52 1.8E-05 50.5 2.7 24 339-362 27-50 (348)
356 2hf9_A Probable hydrogenase ni 82.9 1.3 4.3E-05 43.0 5.2 28 338-365 38-65 (226)
357 2pjz_A Hypothetical protein ST 82.8 0.53 1.8E-05 48.4 2.5 23 340-362 32-54 (263)
358 2dyk_A GTP-binding protein; GT 82.8 0.67 2.3E-05 41.8 3.0 21 340-360 3-23 (161)
359 1pzn_A RAD51, DNA repair and r 82.5 1.1 3.8E-05 47.7 5.0 37 339-375 132-174 (349)
360 3io5_A Recombination and repai 82.5 0.83 2.8E-05 48.7 3.9 37 339-375 29-67 (333)
361 2ce2_X GTPase HRAS; signaling 82.4 0.76 2.6E-05 41.3 3.2 23 339-361 4-26 (166)
362 2www_A Methylmalonic aciduria 82.4 3.8 0.00013 43.5 9.1 26 338-363 74-99 (349)
363 2wji_A Ferrous iron transport 82.3 0.75 2.6E-05 42.5 3.2 22 339-360 4-25 (165)
364 1m7b_A RND3/RHOE small GTP-bin 82.2 0.75 2.6E-05 43.1 3.2 25 337-361 6-30 (184)
365 1kao_A RAP2A; GTP-binding prot 82.2 0.81 2.8E-05 41.3 3.3 22 339-360 4-25 (167)
366 1u8z_A RAS-related protein RAL 82.2 0.82 2.8E-05 41.3 3.3 23 338-360 4-26 (168)
367 2nzj_A GTP-binding protein REM 82.1 0.81 2.8E-05 41.9 3.3 23 338-360 4-26 (175)
368 1z2a_A RAS-related protein RAB 82.0 0.83 2.8E-05 41.4 3.3 24 338-361 5-28 (168)
369 1e9r_A Conjugal transfer prote 82.0 0.77 2.6E-05 49.9 3.6 38 338-375 53-90 (437)
370 2zej_A Dardarin, leucine-rich 81.9 0.58 2E-05 44.1 2.3 22 339-360 3-24 (184)
371 2wjg_A FEOB, ferrous iron tran 81.9 1 3.4E-05 42.1 3.9 23 338-360 7-29 (188)
372 3clv_A RAB5 protein, putative; 81.8 1.2 4E-05 41.5 4.4 25 337-361 6-30 (208)
373 3gd7_A Fusion complex of cysti 81.7 0.74 2.5E-05 50.1 3.3 24 339-362 48-71 (390)
374 1ek0_A Protein (GTP-binding pr 81.7 0.77 2.6E-05 41.6 3.0 23 339-361 4-26 (170)
375 1ky3_A GTP-binding protein YPT 81.6 0.86 2.9E-05 41.9 3.3 24 337-360 7-30 (182)
376 1oxx_K GLCV, glucose, ABC tran 81.5 0.55 1.9E-05 50.4 2.1 24 339-362 32-55 (353)
377 2hxs_A RAB-26, RAS-related pro 81.1 1 3.5E-05 41.4 3.6 25 337-361 5-29 (178)
378 2bbs_A Cystic fibrosis transme 81.0 0.72 2.5E-05 48.0 2.8 24 339-362 65-88 (290)
379 3sfz_A APAF-1, apoptotic pepti 81.0 1.2 4E-05 54.3 5.0 47 304-361 124-170 (1249)
380 3h1t_A Type I site-specific re 81.0 1.4 4.7E-05 49.8 5.3 42 308-363 182-223 (590)
381 2qm8_A GTPase/ATPase; G protei 80.8 2.8 9.6E-05 44.3 7.4 26 338-363 55-80 (337)
382 3lda_A DNA repair protein RAD5 80.6 1.3 4.3E-05 48.4 4.6 37 339-375 179-221 (400)
383 3fkq_A NTRC-like two-domain pr 80.5 2.4 8.1E-05 45.3 6.7 37 339-375 145-181 (373)
384 3kjh_A CO dehydrogenase/acetyl 80.5 1.2 4E-05 43.7 4.0 36 341-376 3-38 (254)
385 1z0j_A RAB-22, RAS-related pro 80.4 0.92 3.1E-05 41.2 3.0 24 338-361 6-29 (170)
386 2gj8_A MNME, tRNA modification 80.3 0.96 3.3E-05 42.2 3.2 23 338-360 4-26 (172)
387 1c1y_A RAS-related protein RAP 80.3 1 3.6E-05 40.7 3.3 22 339-360 4-25 (167)
388 4a1f_A DNAB helicase, replicat 80.1 1.3 4.5E-05 47.2 4.5 36 339-374 47-82 (338)
389 1z08_A RAS-related protein RAB 80.1 0.98 3.4E-05 41.1 3.1 24 337-360 5-28 (170)
390 2lkc_A Translation initiation 80.0 1.1 3.9E-05 41.1 3.5 24 337-360 7-30 (178)
391 1g16_A RAS-related protein SEC 79.9 0.94 3.2E-05 41.1 2.9 22 339-360 4-25 (170)
392 3q85_A GTP-binding protein REM 79.9 0.93 3.2E-05 41.3 2.9 21 339-359 3-23 (169)
393 4dsu_A GTPase KRAS, isoform 2B 79.7 1 3.4E-05 41.8 3.1 23 338-360 4-26 (189)
394 1tf7_A KAIC; homohexamer, hexa 79.7 1.4 4.8E-05 49.4 4.8 36 339-374 282-317 (525)
395 3tui_C Methionine import ATP-b 79.7 0.9 3.1E-05 49.1 3.0 24 339-362 55-78 (366)
396 3nh6_A ATP-binding cassette SU 79.6 0.72 2.5E-05 48.5 2.2 24 339-362 81-104 (306)
397 1r2q_A RAS-related protein RAB 79.6 1 3.5E-05 40.8 3.0 23 338-360 6-28 (170)
398 1wms_A RAB-9, RAB9, RAS-relate 79.5 1 3.4E-05 41.4 3.0 23 338-360 7-29 (177)
399 3q72_A GTP-binding protein RAD 79.5 1 3.5E-05 40.9 3.0 21 339-359 3-23 (166)
400 2erx_A GTP-binding protein DI- 79.5 1.1 3.7E-05 40.7 3.1 22 339-360 4-25 (172)
401 3bc1_A RAS-related protein RAB 79.4 1.2 4.1E-05 41.3 3.5 23 338-360 11-33 (195)
402 1r8s_A ADP-ribosylation factor 79.4 1 3.6E-05 40.7 3.0 24 340-363 2-25 (164)
403 2gk6_A Regulator of nonsense t 79.3 1.4 4.8E-05 50.6 4.7 25 340-364 197-221 (624)
404 2a9k_A RAS-related protein RAL 79.2 1.2 4E-05 41.2 3.3 24 337-360 17-40 (187)
405 2fn4_A P23, RAS-related protei 79.2 1 3.4E-05 41.4 2.9 24 338-361 9-32 (181)
406 2r6a_A DNAB helicase, replicat 79.2 1.5 5E-05 48.3 4.7 36 339-374 204-240 (454)
407 2npi_A Protein CLP1; CLP1-PCF1 79.0 0.78 2.7E-05 51.0 2.4 23 340-362 140-162 (460)
408 3con_A GTPase NRAS; structural 78.9 1.1 3.7E-05 42.0 3.0 23 338-360 21-43 (190)
409 1m2o_B GTP-binding protein SAR 78.9 1.1 3.8E-05 42.5 3.1 23 338-360 23-45 (190)
410 2q6t_A DNAB replication FORK h 78.9 1.5 5.1E-05 48.1 4.6 37 339-375 201-238 (444)
411 3cph_A RAS-related protein SEC 78.7 1.3 4.3E-05 42.3 3.5 24 337-360 19-42 (213)
412 1z0f_A RAB14, member RAS oncog 78.7 1.1 3.8E-05 41.0 3.0 24 338-361 15-38 (179)
413 3auy_A DNA double-strand break 78.6 1.3 4.5E-05 47.3 4.0 28 338-365 25-52 (371)
414 1c9k_A COBU, adenosylcobinamid 78.6 0.99 3.4E-05 43.9 2.7 31 341-375 2-32 (180)
415 3kkq_A RAS-related protein M-R 78.6 1.4 4.9E-05 40.8 3.8 25 337-361 17-41 (183)
416 2gf0_A GTP-binding protein DI- 78.6 1.4 4.8E-05 41.3 3.8 24 337-360 7-30 (199)
417 2bov_A RAla, RAS-related prote 78.5 1.4 4.6E-05 41.7 3.6 24 337-360 13-36 (206)
418 1svi_A GTP-binding protein YSX 78.4 1.2 4.1E-05 41.8 3.2 23 338-360 23-45 (195)
419 1nij_A Hypothetical protein YJ 78.3 1.1 3.8E-05 46.9 3.2 25 339-363 5-29 (318)
420 2y8e_A RAB-protein 6, GH09086P 78.3 1.1 3.8E-05 41.0 2.9 23 338-360 14-36 (179)
421 2oil_A CATX-8, RAS-related pro 78.3 1.1 3.9E-05 42.0 3.0 24 338-361 25-48 (193)
422 3bgw_A DNAB-like replicative h 78.1 1.7 5.7E-05 48.0 4.7 37 339-375 198-234 (444)
423 3tw8_B RAS-related protein RAB 78.1 1.1 3.6E-05 41.3 2.7 23 337-359 8-30 (181)
424 3qkt_A DNA double-strand break 78.1 1.4 4.8E-05 46.5 3.9 27 338-364 23-49 (339)
425 2g6b_A RAS-related protein RAB 78.0 1.2 4.1E-05 41.0 3.1 24 337-360 9-32 (180)
426 1ksh_A ARF-like protein 2; sma 78.0 1.3 4.4E-05 41.3 3.3 23 337-359 17-39 (186)
427 2atv_A RERG, RAS-like estrogen 77.9 1.4 4.9E-05 41.6 3.6 24 337-360 27-50 (196)
428 2bme_A RAB4A, RAS-related prot 77.8 1.2 4E-05 41.4 2.9 24 338-361 10-33 (186)
429 1fzq_A ADP-ribosylation factor 77.8 1.4 4.7E-05 41.4 3.4 24 337-360 15-38 (181)
430 1pui_A ENGB, probable GTP-bind 77.8 0.78 2.7E-05 43.8 1.7 23 338-360 26-48 (210)
431 3bwd_D RAC-like GTP-binding pr 77.6 1.4 5E-05 40.5 3.5 23 338-360 8-30 (182)
432 1moz_A ARL1, ADP-ribosylation 77.5 1 3.4E-05 41.8 2.3 23 337-359 17-39 (183)
433 1zj6_A ADP-ribosylation factor 77.5 1.4 4.9E-05 41.2 3.5 24 337-360 15-38 (187)
434 1zd9_A ADP-ribosylation factor 77.4 1.4 4.7E-05 41.5 3.3 24 337-360 21-44 (188)
435 1vt4_I APAF-1 related killer D 77.4 2.1 7.3E-05 52.4 5.6 45 304-360 128-172 (1221)
436 3t1o_A Gliding protein MGLA; G 77.3 1.3 4.4E-05 41.3 3.0 26 337-362 13-38 (198)
437 2yv5_A YJEQ protein; hydrolase 77.3 1.2 4.1E-05 46.4 3.1 22 340-362 167-188 (302)
438 2efe_B Small GTP-binding prote 77.3 1.3 4.5E-05 40.8 3.1 24 337-360 11-34 (181)
439 1q57_A DNA primase/helicase; d 77.2 1.8 6.1E-05 48.1 4.7 37 339-375 243-280 (503)
440 1mh1_A RAC1; GTP-binding, GTPa 77.1 1.3 4.5E-05 40.9 3.0 23 338-360 5-27 (186)
441 1vg8_A RAS-related protein RAB 77.0 1.4 4.9E-05 41.7 3.3 25 337-361 7-31 (207)
442 2iwr_A Centaurin gamma 1; ANK 76.9 1.3 4.3E-05 41.0 2.8 25 337-361 6-30 (178)
443 2p5s_A RAS and EF-hand domain 76.8 1.5 5.3E-05 41.5 3.5 25 337-361 27-51 (199)
444 2woo_A ATPase GET3; tail-ancho 76.8 2.6 8.9E-05 44.3 5.6 38 339-376 20-57 (329)
445 2cxx_A Probable GTP-binding pr 76.8 1.2 4.1E-05 41.4 2.6 21 340-360 3-23 (190)
446 3thx_A DNA mismatch repair pro 76.7 3.7 0.00013 49.6 7.5 23 340-362 664-686 (934)
447 3iqw_A Tail-anchored protein t 76.7 2.7 9.3E-05 44.6 5.7 39 338-376 16-54 (334)
448 2o5v_A DNA replication and rep 76.6 1.7 5.8E-05 46.7 4.1 28 338-365 26-53 (359)
449 2obl_A ESCN; ATPase, hydrolase 76.6 1.2 4.2E-05 47.5 3.0 24 340-363 73-96 (347)
450 1cp2_A CP2, nitrogenase iron p 76.6 2.1 7.2E-05 42.8 4.6 37 340-376 3-39 (269)
451 3ihw_A Centg3; RAS, centaurin, 76.5 1.7 6E-05 40.9 3.8 25 337-361 19-43 (184)
452 2b6h_A ADP-ribosylation factor 76.5 1.6 5.3E-05 41.5 3.4 23 337-359 28-50 (192)
453 3tkl_A RAS-related protein RAB 76.4 1.6 5.6E-05 40.8 3.5 23 338-360 16-38 (196)
454 2i1q_A DNA repair and recombin 76.3 1.4 4.8E-05 45.8 3.3 23 339-361 99-121 (322)
455 1f6b_A SAR1; gtpases, N-termin 76.3 1.4 4.7E-05 42.2 3.0 22 338-359 25-46 (198)
456 3zq6_A Putative arsenical pump 76.2 2.2 7.6E-05 44.7 4.8 39 338-376 14-52 (324)
457 1p6x_A Thymidine kinase; P-loo 76.2 0.99 3.4E-05 48.1 2.1 25 339-363 8-32 (334)
458 3pqc_A Probable GTP-binding pr 76.2 1.6 5.5E-05 40.6 3.4 23 338-360 23-45 (195)
459 2rcn_A Probable GTPase ENGC; Y 76.2 1.3 4.5E-05 47.6 3.0 22 340-361 217-238 (358)
460 2gf9_A RAS-related protein RAB 76.1 1.4 4.9E-05 41.3 3.0 23 338-360 22-44 (189)
461 3c5c_A RAS-like protein 12; GD 76.1 1.6 5.4E-05 41.2 3.3 24 337-360 20-43 (187)
462 1qhl_A Protein (cell division 76.0 0.82 2.8E-05 46.0 1.3 26 340-365 29-54 (227)
463 3end_A Light-independent proto 76.0 2.2 7.4E-05 43.9 4.6 38 339-376 42-79 (307)
464 3euj_A Chromosome partition pr 75.9 1.6 5.6E-05 48.8 3.8 25 339-363 30-54 (483)
465 3oes_A GTPase rhebl1; small GT 75.7 1.6 5.3E-05 41.6 3.2 25 337-361 23-47 (201)
466 1x3s_A RAS-related protein RAB 75.7 1.5 5.1E-05 40.9 3.0 24 338-361 15-38 (195)
467 2a5j_A RAS-related protein RAB 75.6 1.5 5.1E-05 41.3 3.0 23 338-360 21-43 (191)
468 2fh5_B SR-beta, signal recogni 75.6 1.6 5.5E-05 41.8 3.3 26 337-362 6-31 (214)
469 3reg_A RHO-like small GTPase; 75.5 1.6 5.3E-05 41.2 3.1 25 337-361 22-46 (194)
470 4dzz_A Plasmid partitioning pr 75.5 4 0.00014 38.6 6.1 37 340-376 3-40 (206)
471 1z06_A RAS-related protein RAB 75.5 1.7 5.7E-05 40.8 3.3 24 337-360 19-42 (189)
472 3t5g_A GTP-binding protein RHE 75.4 1.4 4.8E-05 40.8 2.7 23 338-360 6-28 (181)
473 3dz8_A RAS-related protein RAB 75.3 1.5 5.1E-05 41.3 2.9 26 338-363 23-48 (191)
474 1u0l_A Probable GTPase ENGC; p 75.0 1.2 4.2E-05 46.2 2.4 23 340-362 171-193 (301)
475 1ihu_A Arsenical pump-driving 75.0 2.3 7.8E-05 48.3 4.8 37 339-375 9-45 (589)
476 2qtf_A Protein HFLX, GTP-bindi 75.0 2.7 9.4E-05 45.0 5.2 21 340-360 181-201 (364)
477 2bcg_Y Protein YP2, GTP-bindin 74.9 1.5 5.2E-05 41.7 2.9 23 338-360 8-30 (206)
478 1zbd_A Rabphilin-3A; G protein 74.8 1.5 5.2E-05 41.5 2.9 23 338-360 8-30 (203)
479 2fg5_A RAB-22B, RAS-related pr 74.6 1.6 5.5E-05 41.2 3.0 25 337-361 22-46 (192)
480 2dpy_A FLII, flagellum-specifi 74.6 1.5 5E-05 48.5 3.0 23 340-362 159-181 (438)
481 3lxx_A GTPase IMAP family memb 74.5 1.7 5.7E-05 43.0 3.1 24 337-360 28-51 (239)
482 2qnr_A Septin-2, protein NEDD5 74.5 1.3 4.3E-05 46.2 2.3 23 339-361 19-41 (301)
483 2q3h_A RAS homolog gene family 74.4 1.8 6.3E-05 40.8 3.3 24 337-360 19-42 (201)
484 1tf7_A KAIC; homohexamer, hexa 74.3 2.1 7.2E-05 48.0 4.3 35 339-375 40-77 (525)
485 3thx_B DNA mismatch repair pro 74.3 3 0.0001 50.3 5.8 23 340-362 675-697 (918)
486 2qag_B Septin-6, protein NEDD5 74.3 1.7 5.7E-05 48.0 3.3 22 341-362 45-66 (427)
487 1gwn_A RHO-related GTP-binding 74.0 1.8 6.2E-05 41.8 3.2 24 338-361 28-51 (205)
488 1yqt_A RNAse L inhibitor; ATP- 73.9 1.6 5.3E-05 49.5 3.0 24 339-362 48-71 (538)
489 3k53_A Ferrous iron transport 73.9 1.8 6.3E-05 43.8 3.3 22 339-360 4-25 (271)
490 2ew1_A RAS-related protein RAB 73.8 1.7 5.8E-05 41.9 2.9 25 338-362 26-50 (201)
491 2wjy_A Regulator of nonsense t 73.7 2.4 8.3E-05 50.3 4.8 25 340-364 373-397 (800)
492 3io3_A DEHA2D07832P; chaperone 73.4 3.5 0.00012 44.0 5.5 38 339-376 19-58 (348)
493 2atx_A Small GTP binding prote 73.1 1.8 6.1E-05 40.7 2.9 24 338-361 18-41 (194)
494 2j1l_A RHO-related GTP-binding 73.1 1.9 6.6E-05 41.6 3.2 24 337-360 33-56 (214)
495 2h17_A ADP-ribosylation factor 73.0 1.8 6.1E-05 40.3 2.8 24 337-360 20-43 (181)
496 2x77_A ADP-ribosylation factor 73.0 1.6 5.3E-05 40.9 2.4 23 337-359 21-43 (189)
497 1e2k_A Thymidine kinase; trans 72.7 1.1 3.9E-05 47.6 1.5 24 340-363 6-29 (331)
498 2o52_A RAS-related protein RAB 72.6 1.8 6.1E-05 41.3 2.7 23 338-360 25-47 (200)
499 2whx_A Serine protease/ntpase/ 72.6 2.4 8.1E-05 48.8 4.2 22 415-436 276-297 (618)
500 2afh_E Nitrogenase iron protei 72.5 2.5 8.6E-05 43.0 4.0 37 340-376 4-40 (289)
No 1
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=4.8e-32 Score=319.84 Aligned_cols=294 Identities=19% Similarity=0.222 Sum_probs=234.7
Q ss_pred cchHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcce
Q 005186 290 FDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 369 (710)
Q Consensus 290 ~d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~f 369 (710)
.|...+..+++.|.+.|+||++++..|..++...+.|+..++ ++.+++||+||+|||||++|++||+.+ +.+|
T Consensus 444 ~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~----~p~~~~ll~G~~GtGKT~la~~la~~l---~~~~ 516 (758)
T 1r6b_X 444 SDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEH----KPVGSFLFAGPTGVGKTEVTVQLSKAL---GIEL 516 (758)
T ss_dssp SHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTT----SCSEEEEEECSTTSSHHHHHHHHHHHH---TCEE
T ss_pred hHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCC----CCceEEEEECCCCCcHHHHHHHHHHHh---cCCE
Confidence 366788999999999999999999999999999999887764 577899999999999999999999999 5789
Q ss_pred EEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCC
Q 005186 370 ICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 370 I~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~ 449 (710)
+++||+.+ .+.+.+ ..++|...+|.|....+.+.++++++|++||||||||++++++++.|+++|++|++++..
T Consensus 517 ~~i~~s~~----~~~~~~--~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~ 590 (758)
T 1r6b_X 517 LRFDMSEY----MERHTV--SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNN 590 (758)
T ss_dssp EEEEGGGC----SSSSCC--SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETT
T ss_pred EEEechhh----cchhhH--hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCC
Confidence 99999973 333333 355666666666555577899999999999999999999999999999999999999999
Q ss_pred CeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhh
Q 005186 450 GREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNK 529 (710)
Q Consensus 450 Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K 529 (710)
|+.++|+|++||+|||.+...+. ....+|..+.
T Consensus 591 g~~~~~~~~~iI~tsN~~~~~~~----~~~~g~~~~~------------------------------------------- 623 (758)
T 1r6b_X 591 GRKADFRNVVLVMTTNAGVRETE----RKSIGLIHQD------------------------------------------- 623 (758)
T ss_dssp TEEEECTTEEEEEEECSSCC------------------------------------------------------------
T ss_pred CCEEecCCeEEEEecCcchhhhh----hcccCccccc-------------------------------------------
Confidence 99999999999999998654321 0111221000
Q ss_pred hhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCH
Q 005186 530 RKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNF 609 (710)
Q Consensus 530 Rk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~ 609 (710)
. ......+....|.|+|++|+|.+|.|.||+.
T Consensus 624 ------------------~------------------------------~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~ 655 (758)
T 1r6b_X 624 ------------------N------------------------------STDAMEEIKKIFTPEFRNRLDNIIWFDHLST 655 (758)
T ss_dssp ----------------------------------------------------CHHHHHHHSCHHHHTTCSEEEECCCCCH
T ss_pred ------------------h------------------------------HHHHHHHHHHhcCHHHHhhCCcceeeCCCCH
Confidence 0 0001122344789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Q 005186 610 DALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKLVA 688 (710)
Q Consensus 610 d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~~~~~~~v~Lv~ 688 (710)
+++..++...+.+...+.-..++.+.++++|+++|+.++|... |+|.|+++|++.+.++|++.+..++...+..|++..
T Consensus 656 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~~~~~~~~~~~~~~ 735 (758)
T 1r6b_X 656 DVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVAL 735 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHHSTTTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEE
Confidence 9887777665543222221246789999999999999999888 999999999999999999999999988888887766
Q ss_pred ecC
Q 005186 689 CEG 691 (710)
Q Consensus 689 ~~~ 691 (710)
.++
T Consensus 736 ~~~ 738 (758)
T 1r6b_X 736 DKE 738 (758)
T ss_dssp EGG
T ss_pred eCC
Confidence 543
No 2
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.98 E-value=4.7e-31 Score=315.64 Aligned_cols=297 Identities=19% Similarity=0.259 Sum_probs=225.1
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
+...+..+++.|.+.|+||++++..|..++...+.|+..++ ++.+++||+||+|||||++|++||+.+++.+.+|+
T Consensus 545 ~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~----~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i 620 (854)
T 1qvr_A 545 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPN----RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 620 (854)
T ss_dssp HHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSS----SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEE
T ss_pred HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCC----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEE
Confidence 44556667788889999999999999999999998877664 46789999999999999999999999999889999
Q ss_pred EecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC
Q 005186 371 CADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG 450 (710)
Q Consensus 371 ~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G 450 (710)
.+||+.+ .+.+.+ ..++|...+|.|....+.++++++.+|++|||||||+++++.+|+.|+++|++|+++++.|
T Consensus 621 ~i~~~~~----~~~~~~--s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g 694 (854)
T 1qvr_A 621 RIDMTEY----MEKHAV--SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHG 694 (854)
T ss_dssp EECTTTC----CSSGGG--GGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSS
T ss_pred EEechhc----cchhHH--HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCC
Confidence 9999974 322221 2334444444444333678899999999999999999999999999999999999999999
Q ss_pred eEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhh
Q 005186 451 REVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKR 530 (710)
Q Consensus 451 r~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KR 530 (710)
+.++|+|++||+|||.+...+. ... + .
T Consensus 695 ~~vd~~~~iiI~tsn~~~~~~~----------------~~~--------~----~------------------------- 721 (854)
T 1qvr_A 695 RTVDFRNTVIILTSNLGSPLIL----------------EGL--------Q----K------------------------- 721 (854)
T ss_dssp CCEECTTEEEEEECCTTHHHHH----------------HHH--------H----T-------------------------
T ss_pred CEeccCCeEEEEecCcChHHHh----------------hhc--------c----c-------------------------
Confidence 9999999999999998653321 000 0 0
Q ss_pred hccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCHH
Q 005186 531 KLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFD 610 (710)
Q Consensus 531 k~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~d 610 (710)
. ..+..+...+. ......|+|+|++|+|.+|+|.||+.+
T Consensus 722 -----~-----~~~~~l~~~v~-------------------------------~~~~~~f~~~l~~Rl~~~i~~~pl~~e 760 (854)
T 1qvr_A 722 -----G-----WPYERIRDEVF-------------------------------KVLQQHFRPEFLNRLDEIVVFRPLTKE 760 (854)
T ss_dssp -----T-----CCHHHHHHHHH-------------------------------HHHHTTSCHHHHHTCSBCCBCCCCCHH
T ss_pred -----c-----cchHHHHHHHH-------------------------------HHHHhhCCHHHHHhcCeEEeCCCCCHH
Confidence 0 00111111210 112337999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEEEe
Q 005186 611 ALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKLVAC 689 (710)
Q Consensus 611 ~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~~~~~~~v~Lv~~ 689 (710)
++..++...+.+...+....++.+.|+++|+++|+.++|.+. |+|.|++.|++.+..++++.+..+.+..+.+|++...
T Consensus 761 di~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 840 (854)
T 1qvr_A 761 QIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVG 840 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHTSSCSSCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEEE
Confidence 887777655543322221236779999999999999999877 8899999999999999999999999888888866554
Q ss_pred cC
Q 005186 690 EG 691 (710)
Q Consensus 690 ~~ 691 (710)
++
T Consensus 841 ~~ 842 (854)
T 1qvr_A 841 PA 842 (854)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 3
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.97 E-value=2.2e-30 Score=271.85 Aligned_cols=298 Identities=18% Similarity=0.238 Sum_probs=232.8
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
+.+.+..|++.|.+.++||+.+++.|..++...+.++..+. ++..+++|+||+|||||++|++||+.+.+...+++
T Consensus 4 ~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~----~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 4 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPN----RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp HHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTT----SCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCC----CCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 67789999999999999999999999999999988776664 56789999999999999999999999988888999
Q ss_pred EecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC
Q 005186 371 CADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG 450 (710)
Q Consensus 371 ~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G 450 (710)
.+||+.... ... ...++|...++.|....+.+.+++...+++||||||||++++.+|+.|+++|+++.+.+..|
T Consensus 80 ~~~~~~~~~----~~~--~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~ 153 (311)
T 4fcw_A 80 RIDMTEYME----KHA--VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHG 153 (311)
T ss_dssp EEEGGGCCS----TTH--HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTS
T ss_pred Eeecccccc----ccc--HHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCC
Confidence 999986322 111 12345555555554433678899999999999999999999999999999999999999889
Q ss_pred eEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhh
Q 005186 451 REVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKR 530 (710)
Q Consensus 451 r~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KR 530 (710)
+.+++++++||+|||.+...+.... + .
T Consensus 154 ~~~~~~~~iiI~ttn~~~~~i~~~~----------------~-----------------------------------~-- 180 (311)
T 4fcw_A 154 RTVDFRNTVIIMTSNLGSPLILEGL----------------Q-----------------------------------K-- 180 (311)
T ss_dssp CEEECTTEEEEEEESTTHHHHHTTT----------------T-----------------------------------S--
T ss_pred CEEECCCcEEEEecccCHHHHHhhh----------------c-----------------------------------c--
Confidence 9999999999999998653321000 0 0
Q ss_pred hccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCHH
Q 005186 531 KLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFD 610 (710)
Q Consensus 531 k~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~d 610 (710)
.. . +..+.+.+. ......|.++|++|++.++.|.|++.+
T Consensus 181 -----~~--~---~~~l~~~~~-------------------------------~~~~~~~~~~l~~R~~~~~~~~p~~~~ 219 (311)
T 4fcw_A 181 -----GW--P---YERIRDEVF-------------------------------KVLQQHFRPEFLNRLDEIVVFRPLTKE 219 (311)
T ss_dssp -----CC--C---SSTHHHHTH-------------------------------HHHHHHSCHHHHTTCSEEEECCCCCHH
T ss_pred -----cc--c---HHHHHHHHH-------------------------------HHHHHhCCHHHHhcCCeEEEeCCCCHH
Confidence 00 0 001111110 012337899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEEEe
Q 005186 611 ALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKLVAC 689 (710)
Q Consensus 611 ~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~~~~~~~v~Lv~~ 689 (710)
++..++...+.+.....-..+..+.++++++++|+.++|... +.|.|+++|++.+..++++.+..+....+..|++..-
T Consensus 220 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~i~i~~~ 299 (311)
T 4fcw_A 220 QIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVG 299 (311)
T ss_dssp HHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHTSSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEE
Confidence 887777665544222221135679999999999999999866 8899999999999999999999999888888877666
Q ss_pred cCC
Q 005186 690 EGH 692 (710)
Q Consensus 690 ~~~ 692 (710)
++.
T Consensus 300 ~~~ 302 (311)
T 4fcw_A 300 PAG 302 (311)
T ss_dssp SSS
T ss_pred CCe
Confidence 543
No 4
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.97 E-value=2.4e-30 Score=305.68 Aligned_cols=269 Identities=23% Similarity=0.326 Sum_probs=214.2
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
+...+..+++.|.+.|+||++++..|..++...+.+...+. ++.+++||+||+|||||++|++||+.+++.+.+|+
T Consensus 478 ~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~----~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i 553 (758)
T 3pxi_A 478 ETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPK----RPIGSFIFLGPTGVGKTELARALAESIFGDEESMI 553 (758)
T ss_dssp HHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTT----SCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEE
T ss_pred HHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCC----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceE
Confidence 44556778899999999999999999999999998877664 56779999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCC
Q 005186 371 CADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG 450 (710)
Q Consensus 371 ~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~G 450 (710)
++||+.+.. .+.. . .+.++++++..|++||||||||++++.+|+.|+++|++|++++..|
T Consensus 554 ~i~~s~~~~----~~~~-------~---------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g 613 (758)
T 3pxi_A 554 RIDMSEYME----KHST-------S---------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKG 613 (758)
T ss_dssp EEEGGGGCS----SCCC-------C------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC----
T ss_pred EEechhccc----cccc-------c---------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCC
Confidence 999997422 1111 1 1457788889999999999999999999999999999999999999
Q ss_pred eEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhh
Q 005186 451 REVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKR 530 (710)
Q Consensus 451 r~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KR 530 (710)
+.+++.+++||+|||.+.... +. +
T Consensus 614 ~~~~~~~~~iI~ttn~~~~~~-------------~~------------~------------------------------- 637 (758)
T 3pxi_A 614 RTVDFRNTILIMTSNVGASEK-------------DK------------V------------------------------- 637 (758)
T ss_dssp -CCBCTTCEEEEEESSSTTCC-------------HH------------H-------------------------------
T ss_pred CEeccCCeEEEEeCCCChhhH-------------HH------------H-------------------------------
Confidence 999999999999999754210 00 0
Q ss_pred hccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCHH
Q 005186 531 KLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFD 610 (710)
Q Consensus 531 k~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~d 610 (710)
.. .....|+|+|++|+|.+|.|.||+.+
T Consensus 638 -----------------~~-----------------------------------~~~~~f~p~l~~Rl~~~i~~~~l~~~ 665 (758)
T 3pxi_A 638 -----------------MG-----------------------------------ELKRAFRPEFINRIDEIIVFHSLEKK 665 (758)
T ss_dssp -----------------HH-----------------------------------HHHHHSCHHHHTTSSEEEECC--CHH
T ss_pred -----------------HH-----------------------------------HHHhhCCHHHHhhCCeEEecCCCCHH
Confidence 00 01126899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEEEe
Q 005186 611 ALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKLVAC 689 (710)
Q Consensus 611 ~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~~~~~~~~~~v~Lv~~ 689 (710)
++.+++...+.....+....++.+.++++|+++|+..+|.+. |+|.|+++|++.+..++++.++.+....+..|++...
T Consensus 666 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~~~~~~~~~~~~~~ 745 (758)
T 3pxi_A 666 HLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVE 745 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTTCSCSSSEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEE
Confidence 887777655544322222236789999999999999999998 8999999999999999999999999988888877665
Q ss_pred cC
Q 005186 690 EG 691 (710)
Q Consensus 690 ~~ 691 (710)
.+
T Consensus 746 ~~ 747 (758)
T 3pxi_A 746 DG 747 (758)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 5
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.94 E-value=8.2e-27 Score=252.15 Aligned_cols=291 Identities=16% Similarity=0.227 Sum_probs=180.3
Q ss_pred HhHHHHHHHhcCcccccHHHHHHHHHHHHHHh----cCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcc
Q 005186 293 SNWKTLFRALTEKIDWQDEAISVISQTIAQRR----TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN 368 (710)
Q Consensus 293 ~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r----~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~ 368 (710)
..+..|.+.|.+.|+||+++++.|..++.... .+..... ...+..++||+||+|||||++|++||+.+ +.+
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~--~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~ 78 (363)
T 3hws_A 4 PTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNG--VELGKSNILLIGPTGSGKTLLAETLARLL---DVP 78 (363)
T ss_dssp CCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSS--CCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCC
T ss_pred CCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhcccccccc--ccCCCCeEEEECCCCCCHHHHHHHHHHHc---CCC
Confidence 35678899999999999999999999885443 2221111 11245689999999999999999999998 689
Q ss_pred eEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHH-------hCCCeEEEEeccccCCHH----------
Q 005186 369 FICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL-------KKPLSVVYLENVDKADVH---------- 431 (710)
Q Consensus 369 fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~-------~~p~sVI~LDEIDKa~~~---------- 431 (710)
|+.++|+.. ...+|+|+... +.+.+.+. ..+.+||||||||++++.
T Consensus 79 ~~~~~~~~l----------~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~ 141 (363)
T 3hws_A 79 FTMADATTL----------TEAGYVGEDVE-------NIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDV 141 (363)
T ss_dssp EEEEEHHHH----------TTCHHHHHHHT-------HHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHH
T ss_pred EEEechHHh----------cccccccccHH-------HHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccccccccc
Confidence 999999852 12345554322 33444433 235679999999999876
Q ss_pred ----HHHHHHhhHhCCcc---cCCCCeEeecCceEEEEccCCCccccccccccccccc-hHHHHHHHhhhhhhhhhhhhh
Q 005186 432 ----VQNSLSKAIQTGKL---PDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKF-SEEKIYRAKSRLTQILIEPAL 503 (710)
Q Consensus 432 ----vqn~LLq~LE~G~l---~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f-~eeki~~~k~~~l~~~i~~~~ 503 (710)
+|+.|+++|| |.+ .+..|+.+++.++++|+|||...-. ...| +.+++.+.+-.. ...++...
T Consensus 142 ~~~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~--------~g~~~~l~~~i~~~~~~-~~~~gf~~ 211 (363)
T 3hws_A 142 SGEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFIC--------GGAFAGLDKVISHRVET-GSGIGFGA 211 (363)
T ss_dssp HHHHHHHHHHHHHH-CC----------------CCCCCTTSSEEEE--------EECCTTHHHHHHHHHCC-CC------
T ss_pred chHHHHHHHHHHhc-CceeeccCccccccCCCceEEEECCCceEEe--------cCCcHHHHHHHHHhhhc-cccCCccc
Confidence 9999999999 653 5567788888888888888862210 0112 112221110000 00000000
Q ss_pred hccccccccccccccccchhhhhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCc
Q 005186 504 VNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDS 583 (710)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~ 583 (710)
.. ....+......+.+.+. .
T Consensus 212 ~~------------------------------~~~~~~~~~~~l~~~v~------------------------------~ 231 (363)
T 3hws_A 212 TV------------------------------KAKSDKASEGELLAQVE------------------------------P 231 (363)
T ss_dssp ------------------------------------CCSCHHHHHHTCC------------------------------H
T ss_pred cc------------------------------cccccchhhHHHHHhCC------------------------------H
Confidence 00 00000000111111110 0
Q ss_pred cc-ccccchhHHhcCcceeeecCCCCHHHHHHHHHH---HHHHHHhhhcC-CCceEEeCHHHHHHHHHhcCCCC-ChHHH
Q 005186 584 SE-NTKSWLQDFFNQRVKIVAFKAFNFDALAEKILK---DINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-SNRVI 657 (710)
Q Consensus 584 ~e-~~~~f~~efl~RiD~iVvF~PLD~d~Laeiil~---~L~~~~~~~~g-~~i~LeId~eale~La~~~~~~~-GaR~l 657 (710)
.+ ....|+|+|++||+.+++|.|++.+++.+++.. .+..++.+.++ .++.+.++++|+++|+.++|.+. |+|.|
T Consensus 232 ~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L 311 (363)
T 3hws_A 232 EDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGL 311 (363)
T ss_dssp HHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTH
T ss_pred HHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHH
Confidence 01 123599999999999999999999988777754 23333443332 47789999999999999889888 89999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005186 658 EDWLEKVLVRGFLDAQEK 675 (710)
Q Consensus 658 e~~IE~vl~~~L~el~~~ 675 (710)
+++||+.+.+.+.++...
T Consensus 312 ~~~ie~~~~~~l~~~~~~ 329 (363)
T 3hws_A 312 RSIVEAALLDTMYDLPSM 329 (363)
T ss_dssp HHHHHHHHHHHHHSTTTC
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 999999999999876444
No 6
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.90 E-value=2.5e-23 Score=225.67 Aligned_cols=292 Identities=15% Similarity=0.184 Sum_probs=170.1
Q ss_pred chHhHHHHHHHhcCcccccHHHHHHHHHHHH----HHhcCC-------CCCCC------CCCCCCeEEEEecCCCCchhH
Q 005186 291 DLSNWKTLFRALTEKIDWQDEAISVISQTIA----QRRTGH-------EDHHG------ASPRRDIWFNFTGPDLCGKRK 353 (710)
Q Consensus 291 d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~----~~r~g~-------~~~~~------~~~r~~~~lLf~GP~GvGKT~ 353 (710)
+..+++.|.+.|.+.|+||++|++.|..++. +.+.|. ..+++ ...++..+++|+||+|||||+
T Consensus 8 ~~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~ 87 (376)
T 1um8_A 8 YIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTL 87 (376)
T ss_dssp CCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHH
T ss_pred CCCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHH
Confidence 3456789999999999999999999998883 333221 00000 001245689999999999999
Q ss_pred HHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHH-------HhCCCeEEEEeccc
Q 005186 354 IAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL-------LKKPLSVVYLENVD 426 (710)
Q Consensus 354 LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al-------~~~p~sVI~LDEID 426 (710)
+|++||+.+ +.+|+.++|.... +.+|+|.... +.+.+.+ ...+.+|||||||+
T Consensus 88 la~~la~~l---~~~~~~~~~~~~~----------~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~vl~iDEi~ 147 (376)
T 1um8_A 88 MAQTLAKHL---DIPIAISDATSLT----------EAGYVGEDVE-------NILTRLLQASDWNVQKAQKGIVFIDEID 147 (376)
T ss_dssp HHHHHHHHT---TCCEEEEEGGGCC------------------CT-------HHHHHHHHHTTTCHHHHTTSEEEEETGG
T ss_pred HHHHHHHHh---CCCEEEecchhhh----------hcCcCCccHH-------HHHHHHHhhccchhhhcCCeEEEEcCHH
Confidence 999999988 6789999998521 1244454322 2333332 23467899999999
Q ss_pred cCCHH--------------HHHHHHhhHhCCc--ccCCCCeEeecCceEEEEccCCCccccccccccccccchHHHHHHH
Q 005186 427 KADVH--------------VQNSLSKAIQTGK--LPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRA 490 (710)
Q Consensus 427 Ka~~~--------------vqn~LLq~LE~G~--l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~ 490 (710)
+++.. +|+.|+++|+++. +.+..|+.....++++|.|+|+..-. . + .|. .+..
T Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~---~----~-~~~--~l~~- 216 (376)
T 1um8_A 148 KISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFIC---A----G-AFD--GLAE- 216 (376)
T ss_dssp GC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEE---E----E-CCT--THHH-
T ss_pred HHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEe---c----C-CHH--HHHH-
Confidence 99988 9999999999875 45556666555566666666642100 0 0 010 0000
Q ss_pred hhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhh
Q 005186 491 KSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEV 570 (710)
Q Consensus 491 k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~ 570 (710)
. +. |+... .++-++.++.+.
T Consensus 217 -------~----------------------------l~-~R~~~------------------------~~~g~~~~~~~~ 236 (376)
T 1um8_A 217 -------I----------------------------IK-KRTTQ------------------------NVLGFTQEKMSK 236 (376)
T ss_dssp -------H----------------------------TT-TSCSS------------------------CCCSCCCSSCCT
T ss_pred -------H----------------------------HH-HHhcc------------------------cccCCCchhhhc
Confidence 0 00 00000 000001000000
Q ss_pred hhcCCCCCCCCCcc-c-ccccchhHHhcCcceeeecCCCCHHHHHHHHHH---HHHHHHhhhc-CCCceEEeCHHHHHHH
Q 005186 571 LVLDSDDDRNSDSS-E-NTKSWLQDFFNQRVKIVAFKAFNFDALAEKILK---DINASFRKTV-GSECLLEIDRKVMEQL 644 (710)
Q Consensus 571 ~~~d~~~~~~d~~~-e-~~~~f~~efl~RiD~iVvF~PLD~d~Laeiil~---~L~~~~~~~~-g~~i~LeId~eale~L 644 (710)
... ......... + ....|.|+|++|++.+|.|.||+.+++.+++.. .+..++.+.+ ..+..+.++++|+++|
T Consensus 237 ~~~--~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 314 (376)
T 1um8_A 237 KEQ--EAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEI 314 (376)
T ss_dssp TTT--TTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred cch--hHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHH
Confidence 000 000000000 0 133689999999999999999999999888752 3333333322 2366799999999999
Q ss_pred HHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHh
Q 005186 645 LAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEK 675 (710)
Q Consensus 645 a~~~~~~~-GaR~le~~IE~vl~~~L~el~~~ 675 (710)
+.++|... |+|.|+++|++++...+.++...
T Consensus 315 ~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~ 346 (376)
T 1um8_A 315 AQLALERKTGARGLRAIIEDFCLDIMFDLPKL 346 (376)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGG
T ss_pred HHHhcccccCcHHHHHHHHHHHHHHHhhccCC
Confidence 99998766 88999999999999998876643
No 7
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.86 E-value=1.1e-20 Score=197.09 Aligned_cols=240 Identities=13% Similarity=0.191 Sum_probs=170.7
Q ss_pred hHHHHHHHhcCcccccHHHHHHHHHHHHHHhc--CCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEE
Q 005186 294 NWKTLFRALTEKIDWQDEAISVISQTIAQRRT--GHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 371 (710)
Q Consensus 294 ~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~--g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~ 371 (710)
.+.+|.+.|.+.|+||+++++.|..++..... ++..... ..+...+++|+||+|||||++|++||+.+ +.+++.
T Consensus 5 ~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~ 80 (310)
T 1ofh_A 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIK 80 (310)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHH-HHCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred CHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhccccc-ccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 46788999999999999999999998876321 1110000 00134589999999999999999999998 678999
Q ss_pred ecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHH-------h-CCCeEEEEeccccCCHHH-----------
Q 005186 372 ADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL-------K-KPLSVVYLENVDKADVHV----------- 432 (710)
Q Consensus 372 iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~-------~-~p~sVI~LDEIDKa~~~v----------- 432 (710)
++|+.... .+|+|.+.. ..+.+.+. . .+.+||||||||++++..
T Consensus 81 i~~~~~~~----------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~ 143 (310)
T 1ofh_A 81 VEATKFTE----------VGYVGKEVD-------SIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREG 143 (310)
T ss_dssp EEGGGGSS----------CCSGGGSTT-------HHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHH
T ss_pred Ecchhccc----------CCccCccHH-------HHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHH
Confidence 99986311 134443321 12222221 1 235899999999998654
Q ss_pred -HHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccc
Q 005186 433 -QNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQK 511 (710)
Q Consensus 433 -qn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~ 511 (710)
++.|+++|+++.+....| .+...+++||+++|....
T Consensus 144 ~~~~Ll~~le~~~~~~~~~-~~~~~~~~~i~~~~~~~~------------------------------------------ 180 (310)
T 1ofh_A 144 VQRDLLPLVEGSTVSTKHG-MVKTDHILFIASGAFQVA------------------------------------------ 180 (310)
T ss_dssp HHHHHHHHHHCCEEEETTE-EEECTTCEEEEEECCSSS------------------------------------------
T ss_pred HHHHHHHHhcCCeEecccc-cccCCcEEEEEcCCcccC------------------------------------------
Confidence 999999999887766544 556678888888763100
Q ss_pred cccccccccchhhhhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccch
Q 005186 512 LSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWL 591 (710)
Q Consensus 512 ~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~ 591 (710)
. ...+.
T Consensus 181 -----------~---------------------------------------------------------------~~~l~ 186 (310)
T 1ofh_A 181 -----------R---------------------------------------------------------------PSDLI 186 (310)
T ss_dssp -----------C---------------------------------------------------------------GGGSC
T ss_pred -----------C---------------------------------------------------------------cccCC
Confidence 0 00355
Q ss_pred hHHhcCcceeeecCCCCHHHHHHHHHH---HHHHHHhhhcC-CCceEEeCHHHHHHHHHhcCC------CCChHHHHHHH
Q 005186 592 QDFFNQRVKIVAFKAFNFDALAEKILK---DINASFRKTVG-SECLLEIDRKVMEQLLAAAYL------SESNRVIEDWL 661 (710)
Q Consensus 592 ~efl~RiD~iVvF~PLD~d~Laeiil~---~L~~~~~~~~g-~~i~LeId~eale~La~~~~~------~~GaR~le~~I 661 (710)
++|++|++.+|.|.|++.+++.+++.+ .+..++.+.+. .+..+.++++++++|+..+|. ..+.|.+.+.+
T Consensus 187 ~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l 266 (310)
T 1ofh_A 187 PELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVM 266 (310)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHH
T ss_pred HHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHH
Confidence 789999998899999999998888763 23222322221 366789999999999999886 34789999999
Q ss_pred HHHHHHHHHH
Q 005186 662 EKVLVRGFLD 671 (710)
Q Consensus 662 E~vl~~~L~e 671 (710)
++++.....+
T Consensus 267 ~~~~~~~~~~ 276 (310)
T 1ofh_A 267 ERLMDKISFS 276 (310)
T ss_dssp HHHSHHHHHH
T ss_pred HHHHHhhhcC
Confidence 9998776544
No 8
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.85 E-value=8.3e-21 Score=210.89 Aligned_cols=260 Identities=12% Similarity=0.176 Sum_probs=179.1
Q ss_pred hHHHHHHHhcCcccccHHHHHHHHHHHHHHh--cCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEE
Q 005186 294 NWKTLFRALTEKIDWQDEAISVISQTIAQRR--TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 371 (710)
Q Consensus 294 ~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r--~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~ 371 (710)
..+++.+.|.+.|+||++|++.|..++.... .+....-+ ...+...+||+||+|||||++|++||..+ +.+|+.
T Consensus 5 tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~ 80 (444)
T 1g41_A 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIK 80 (444)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTT-TTCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEE
T ss_pred CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccc-cccCCceEEEEcCCCCCHHHHHHHHHHHc---CCCcee
Confidence 4688999999999999999999998886532 11111100 00134579999999999999999999998 779999
Q ss_pred ecCCCCCC-CCCCCC--Ccc------------------------------------------------------------
Q 005186 372 ADLCPQDG-EMNNPP--KFY------------------------------------------------------------ 388 (710)
Q Consensus 372 iD~s~~~~-e~~~~~--sl~------------------------------------------------------------ 388 (710)
+|++.... .|.... .++
T Consensus 81 v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld 160 (444)
T 1g41_A 81 VEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFR 160 (444)
T ss_dssp EEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC----------------------------------------
T ss_pred ecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHH
Confidence 99874211 011110 000
Q ss_pred ----cccc------cccccc-------c--c-----c------------c-------------------------chhhH
Q 005186 389 ----HQVV------GGDSVQ-------F--R-----G------------K-------------------------TLADY 407 (710)
Q Consensus 389 ----~~~~------~G~~~~-------f--~-----G------------~-------------------------t~~~~ 407 (710)
.++. ++.+.. | . | + ..-..
T Consensus 161 ~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~ 240 (444)
T 1g41_A 161 KKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEEL 240 (444)
T ss_dssp -----------------------------------------------------------------CCGGGSCSSCCHHHH
T ss_pred HHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHH
Confidence 0000 000000 0 0 0 0 00001
Q ss_pred HHHHHHhC-CCeEEEEeccccCCH------------HHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccccccc
Q 005186 408 VAWELLKK-PLSVVYLENVDKADV------------HVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 474 (710)
Q Consensus 408 L~~al~~~-p~sVI~LDEIDKa~~------------~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~ 474 (710)
..+++.+. +++|+++|||||+.. .||+.||++||.......+ ..++.++++||+|..
T Consensus 241 ~~~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~-~~~d~~~ilfI~~ga--------- 310 (444)
T 1g41_A 241 KQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH-GMVKTDHILFIASGA--------- 310 (444)
T ss_dssp HHHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETT-EEEECTTCEEEEEEC---------
T ss_pred HHHHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccccc-ceecCCcEEEEeccc---------
Confidence 23344444 678999999999863 3899999999977655533 678999999998743
Q ss_pred cccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCCChHHHHHhhccC
Q 005186 475 SEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRS 554 (710)
Q Consensus 475 ~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~ 554 (710)
|. + . ++
T Consensus 311 -------f~---------------~----~------------------~~------------------------------ 316 (444)
T 1g41_A 311 -------FQ---------------V----A------------------RP------------------------------ 316 (444)
T ss_dssp -------CS---------------S----C------------------CG------------------------------
T ss_pred -------cc---------------c----C------------------Ch------------------------------
Confidence 10 0 0 00
Q ss_pred CCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCHHHHHHHH---HHHHHHHHhhhcC-C
Q 005186 555 PTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFDALAEKI---LKDINASFRKTVG-S 630 (710)
Q Consensus 555 s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~d~Laeii---l~~L~~~~~~~~g-~ 630 (710)
..++|+|++|++.+|.|.+|+.+++.+|+ .+.+.+++.+.++ .
T Consensus 317 ---------------------------------~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~ 363 (444)
T 1g41_A 317 ---------------------------------SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE 363 (444)
T ss_dssp ---------------------------------GGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTT
T ss_pred ---------------------------------hhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhccc
Confidence 02568999999999999999999999999 4566666666554 6
Q ss_pred CceEEeCHHHHHHHHHhcCC-----CC-ChHHHHHHHHHHHHHHHHHHHH
Q 005186 631 ECLLEIDRKVMEQLLAAAYL-----SE-SNRVIEDWLEKVLVRGFLDAQE 674 (710)
Q Consensus 631 ~i~LeId~eale~La~~~~~-----~~-GaR~le~~IE~vl~~~L~el~~ 674 (710)
++.|+|+++|+++|+..++. .+ |+|.|++.||+++.....++..
T Consensus 364 ~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~ 413 (444)
T 1g41_A 364 GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD 413 (444)
T ss_dssp TCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGG
T ss_pred CceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhccc
Confidence 88999999999999998663 55 9999999999999999888754
No 9
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.77 E-value=1.4e-18 Score=184.27 Aligned_cols=144 Identities=14% Similarity=0.128 Sum_probs=103.9
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.++|++.++..+...+..... ...++||+||+|||||++|++||+.+.....+|+.+||+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~---- 66 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE---- 66 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH----
T ss_pred CCcEECCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh----
Confidence 4689999999999888876632 2358999999999999999999998877778999999996321
Q ss_pred CCCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEE
Q 005186 384 PPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVT 462 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~Il 462 (710)
.++...++|+..+ |.|... ...+.+.....++||||||+.++..+|..|+++|+++.+....+....-.++.||+
T Consensus 67 --~l~~~~lfg~~~g~~tg~~~--~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~ 142 (304)
T 1ojl_A 67 --SLLESELFGHEKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIA 142 (304)
T ss_dssp --HHHHHHHTCCCSSCCC---C--CCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEE
T ss_pred --HHHHHHhcCccccccCchhh--hhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEE
Confidence 2223455666544 333211 01122233346899999999999999999999999998765444332234577999
Q ss_pred ccCC
Q 005186 463 ASSF 466 (710)
Q Consensus 463 TSN~ 466 (710)
|||.
T Consensus 143 atn~ 146 (304)
T 1ojl_A 143 ATHR 146 (304)
T ss_dssp EESS
T ss_pred ecCc
Confidence 9995
No 10
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.76 E-value=2.2e-18 Score=177.47 Aligned_cols=228 Identities=14% Similarity=0.145 Sum_probs=147.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.++|++.++..+...+..... ...+++|+||+|||||++|++||+.+.....+|+.++|+....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~---- 70 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE---- 70 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH----
T ss_pred ccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh----
Confidence 4588999999998888876532 2248999999999999999999998876678999999996311
Q ss_pred CCCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEE
Q 005186 384 PPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVT 462 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~Il 462 (710)
.++...++|+..+ |.|... ...+.+.....+|||||||+++++.+|..|+++|+++.+....+....-.++.||+
T Consensus 71 --~~~~~~l~g~~~~~~~g~~~--~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~ 146 (265)
T 2bjv_A 71 --NLLDSELFGHEAGAFTGAQK--RHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVC 146 (265)
T ss_dssp --HHHHHHHHCCC-----------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEE
T ss_pred --hHHHHHhcCCcccccccccc--cccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEE
Confidence 1111233444322 222110 01122334456899999999999999999999999998876544333335678999
Q ss_pred ccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCC
Q 005186 463 ASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQH 542 (710)
Q Consensus 463 TSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~ 542 (710)
|||..... + + .
T Consensus 147 atn~~~~~----------------~-----------~----------------------------~-------------- 157 (265)
T 2bjv_A 147 ATNADLPA----------------M-----------V----------------------------N-------------- 157 (265)
T ss_dssp EESSCHHH----------------H-----------H----------------------------H--------------
T ss_pred ecCcCHHH----------------H-----------H----------------------------H--------------
Confidence 99952100 0 0 0
Q ss_pred ChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcce-eeecCCCCH--HHHHHHHHHH
Q 005186 543 DTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVK-IVAFKAFNF--DALAEKILKD 619 (710)
Q Consensus 543 ~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~-iVvF~PLD~--d~Laeiil~~ 619 (710)
...|.++|++|++. .|.+.||+. +++..++...
T Consensus 158 --------------------------------------------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~ 193 (265)
T 2bjv_A 158 --------------------------------------------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYF 193 (265)
T ss_dssp --------------------------------------------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHH
T ss_pred --------------------------------------------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHH
Confidence 01577899999964 578888864 5555444433
Q ss_pred HHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 005186 620 INASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVL 665 (710)
Q Consensus 620 L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl 665 (710)
+... .+..+......++++++++|..+.| +...|.|++.|+..+
T Consensus 194 l~~~-~~~~~~~~~~~~~~~a~~~L~~~~~-~gn~reL~~~l~~~~ 237 (265)
T 2bjv_A 194 AIQM-CREIKLPLFPGFTERARETLLNYRW-PGNIRELKNVVERSV 237 (265)
T ss_dssp HHHH-HHHTTCSSCCCBCHHHHHHHHHSCC-TTHHHHHHHHHHHHH
T ss_pred HHHH-HHHhCCCcccCcCHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Confidence 3332 2222222223789999999998665 224589999998875
No 11
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.76 E-value=2.1e-18 Score=188.81 Aligned_cols=224 Identities=17% Similarity=0.250 Sum_probs=163.5
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
..++|++.++..+...+..... .+.++++.|++|+||+.+|++|+........+|+.+||+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~---- 201 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISC-----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR---- 201 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTT-----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH----
T ss_pred hhhhhccHHhhHHHHHHHHhcC-----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH----
Confidence 4689999999988888876432 3457899999999999999999999877789999999996322
Q ss_pred CCCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEE
Q 005186 384 PPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVT 462 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~Il 462 (710)
.++...++|+..+ |.|... ...+.+.....++||||||+.+++.+|..|+++|++|++....|......++.||+
T Consensus 202 --~~~~~elfg~~~g~~tga~~--~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~ 277 (387)
T 1ny5_A 202 --DIFEAELFGYEKGAFTGAVS--SKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILA 277 (387)
T ss_dssp --HHHHHHHHCBCTTSSTTCCS--CBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEE
T ss_pred --HHHHHHhcCCCCCCCCCccc--ccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEE
Confidence 2334567887765 444321 11234455667999999999999999999999999999987666544445677999
Q ss_pred ccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCC
Q 005186 463 ASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQH 542 (710)
Q Consensus 463 TSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~ 542 (710)
|||..... .+ .
T Consensus 278 at~~~l~~---------------------------~~----------------------------~-------------- 288 (387)
T 1ny5_A 278 ATNRNIKE---------------------------LV----------------------------K-------------- 288 (387)
T ss_dssp EESSCHHH---------------------------HH----------------------------H--------------
T ss_pred eCCCCHHH---------------------------HH----------------------------H--------------
Confidence 99952110 00 0
Q ss_pred ChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCccee-eecCCC-----CHHHHHHHH
Q 005186 543 DTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAF-----NFDALAEKI 616 (710)
Q Consensus 543 ~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~i-VvF~PL-----D~d~Laeii 616 (710)
...|+++|++|+..+ |...|| |...|++.+
T Consensus 289 --------------------------------------------~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~ 324 (387)
T 1ny5_A 289 --------------------------------------------EGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHF 324 (387)
T ss_dssp --------------------------------------------TTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHH
T ss_pred --------------------------------------------cCCccHHHHHhhcCCeecCCcchhccccHHHHHHHH
Confidence 016899999999765 556667 334456666
Q ss_pred HHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHHH
Q 005186 617 LKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 666 (710)
Q Consensus 617 l~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl~ 666 (710)
++++..++.+ . ...++++|++.|..+.| +|+ |.|++.|++.+.
T Consensus 325 l~~~~~~~~~----~-~~~~~~~a~~~l~~~~w--pGNvreL~~~i~~~~~ 368 (387)
T 1ny5_A 325 LKKFSRKYAK----E-VEGFTKSAQELLLSYPW--YGNVRELKNVIERAVL 368 (387)
T ss_dssp HHHHHHHTTC----C-CCEECHHHHHHHHHSCC--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC----C-CCCCCHHHHHHHHhCCC--CcHHHHHHHHHHHHHH
Confidence 6666554432 1 25799999999999654 655 999999998764
No 12
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.76 E-value=7e-18 Score=192.45 Aligned_cols=238 Identities=14% Similarity=0.189 Sum_probs=162.2
Q ss_pred HHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 295 WKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 295 lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
+..+.+.|.+.++|+++++..+...+......... +...++|+||+|||||++|++||..+ ..+++.++|
T Consensus 72 ~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~-------~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~ 141 (543)
T 3m6a_A 72 LKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL-------KGPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISL 141 (543)
T ss_dssp TTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC-------CSCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEECC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC-------CCCEEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEe
Confidence 34455667888999999999998777655443222 22489999999999999999999999 678999999
Q ss_pred CCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhC--CCeEEEEeccccCCHH----HHHHHHhhHhCCc---c
Q 005186 375 CPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK--PLSVVYLENVDKADVH----VQNSLSKAIQTGK---L 445 (710)
Q Consensus 375 s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~--p~sVI~LDEIDKa~~~----vqn~LLq~LE~G~---l 445 (710)
+.... . ..++|+...|.|... +.+...+... ...|+||||||++++. .++.|+++|+.+. +
T Consensus 142 ~~~~~----~-----~~~~g~~~~~ig~~~-~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~ 211 (543)
T 3m6a_A 142 GGVRD----E-----SEIRGHRRTYVGAMP-GRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSF 211 (543)
T ss_dssp CC------------------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBC
T ss_pred cccch----h-----hhhhhHHHHHhccCc-hHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhccee
Confidence 85321 1 122333333333211 2233333332 4569999999999988 5699999998764 3
Q ss_pred cCC-CCeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhh
Q 005186 446 PDS-YGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQ 524 (710)
Q Consensus 446 ~d~-~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (710)
.+. .+..+++.+++||+|||...
T Consensus 212 ~~~~~~~~~~~~~v~iI~ttN~~~-------------------------------------------------------- 235 (543)
T 3m6a_A 212 SDHYIEETFDLSKVLFIATANNLA-------------------------------------------------------- 235 (543)
T ss_dssp CCSSSCCCCBCSSCEEEEECSSTT--------------------------------------------------------
T ss_pred ecccCCeeecccceEEEeccCccc--------------------------------------------------------
Confidence 333 34678889999999999410
Q ss_pred hhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeec
Q 005186 525 KLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAF 604 (710)
Q Consensus 525 ~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF 604 (710)
.+.+.|++|++ +|.|
T Consensus 236 ----------------------------------------------------------------~l~~aL~~R~~-vi~~ 250 (543)
T 3m6a_A 236 ----------------------------------------------------------------TIPGPLRDRME-IINI 250 (543)
T ss_dssp ----------------------------------------------------------------TSCHHHHHHEE-EEEC
T ss_pred ----------------------------------------------------------------cCCHHHHhhcc-eeee
Confidence 24467888995 7899
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHH
Q 005186 605 KAFNFDALAEKILKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQE 674 (710)
Q Consensus 605 ~PLD~d~Laeiil~~L~~~~~~~~g-~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~ 674 (710)
.+++.++..+++.+.+..++.+..+ ....+.++++++++|+.. |.++ |.|.|++.|+.++.....+++.
T Consensus 251 ~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~-~~~~~~vR~L~~~i~~~~~~aa~~~~~ 321 (543)
T 3m6a_A 251 AGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY-YTREAGVRSLERQLAAICRKAAKAIVA 321 (543)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHh-CChhhchhHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888777555444433 223689999999999884 5665 8899999999999876666554
No 13
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.76 E-value=4.6e-18 Score=185.04 Aligned_cols=221 Identities=16% Similarity=0.194 Sum_probs=159.4
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.++|++.++..+...+..... ...++++.|++|+||+.+|++|+...... ..|+.+||+....
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~-~~fv~vnc~~~~~----- 192 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRK-GAFVDLNCASIPQ----- 192 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCC-SCEEEEESSSSCT-----
T ss_pred cccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhcccc-CCcEEEEcccCCh-----
Confidence 478999999888888776543 24579999999999999999999987544 4499999997432
Q ss_pred CCcccccccccccc-ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEc
Q 005186 385 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 463 (710)
Q Consensus 385 ~sl~~~~~~G~~~~-f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlT 463 (710)
++....++|+..+ |.|... .-.+.+.....++||||||+.+++.+|..|+++|++|.+....|...-..++.+|++
T Consensus 193 -~~~~~~lfg~~~g~~tga~~--~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~a 269 (368)
T 3dzd_A 193 -ELAESELFGHEKGAFTGALT--RKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISA 269 (368)
T ss_dssp -TTHHHHHHEECSCSSSSCCC--CEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEE
T ss_pred -HHHHHHhcCccccccCCccc--ccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEe
Confidence 2334567888765 444321 111233445678999999999999999999999999998876554333345669999
Q ss_pred cCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCCC
Q 005186 464 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 543 (710)
Q Consensus 464 SN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~ 543 (710)
||..... . +.
T Consensus 270 t~~~l~~---------------------------~----------------------------v~--------------- 279 (368)
T 3dzd_A 270 TNKNLEE---------------------------E----------------------------IK--------------- 279 (368)
T ss_dssp ESSCHHH---------------------------H----------------------------HH---------------
T ss_pred cCCCHHH---------------------------H----------------------------HH---------------
Confidence 9941100 0 00
Q ss_pred hHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCccee-eecCCCC-----HHHHHHHHH
Q 005186 544 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAFN-----FDALAEKIL 617 (710)
Q Consensus 544 ~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~i-VvF~PLD-----~d~Laeiil 617 (710)
...|+++|++|+..+ |.+.||. ...|++.++
T Consensus 280 -------------------------------------------~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l 316 (368)
T 3dzd_A 280 -------------------------------------------KGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFL 316 (368)
T ss_dssp -------------------------------------------TTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHH
T ss_pred -------------------------------------------cCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHH
Confidence 016999999999875 6677783 345566666
Q ss_pred HHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCCh-HHHHHHHHHHH
Q 005186 618 KDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVL 665 (710)
Q Consensus 618 ~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~Ga-R~le~~IE~vl 665 (710)
+++...+.+ ..+.++++|++.|..+ .|+|+ |.|++.||+.+
T Consensus 317 ~~~~~~~~~-----~~~~~~~~a~~~L~~~--~wpGNvreL~n~i~~~~ 358 (368)
T 3dzd_A 317 KKFAKEYKK-----NCFELSEETKEYLMKQ--EWKGNVRELKNLIERAV 358 (368)
T ss_dssp HHHHHHTTC-----CCCCBCHHHHHHHHTC--CCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-----CCCCcCHHHHHHHHhC--CCCcHHHHHHHHHHHHH
Confidence 666554432 2367999999999985 55665 89999999876
No 14
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.75 E-value=7e-17 Score=169.12 Aligned_cols=232 Identities=14% Similarity=0.115 Sum_probs=169.4
Q ss_pred CcccccchHhHHHHHHHhcCcccccHHHHHHHHHHHHHHh-------cCCCCCCCCCCCCCeEEEEecCCCCchhHHHHH
Q 005186 285 DLNCQFDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRR-------TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIA 357 (710)
Q Consensus 285 ~~~~~~d~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r-------~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAra 357 (710)
++...++...+.++.+.|.+.|+||+++++.|...+.... .|+... ++..+++|+||+|||||++|++
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-----~~~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 12 DLRAEYEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-----TPTLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-----CCCCEEEEEECTTSSHHHHHHH
T ss_pred CCChhhccccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-----CCCceEEEECCCCCCHHHHHHH
Confidence 4556667778899999999999999999999987776432 233322 3456899999999999999999
Q ss_pred HHHHHcCC----CcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----
Q 005186 358 LAEIIYGG----KENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA----- 428 (710)
Q Consensus 358 LAe~L~gs----~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa----- 428 (710)
||+.+... ..+++.++++... ..++|... ..+.+.+.....+||||||||.+
T Consensus 87 la~~l~~~~~~~~~~~~~~~~~~l~-----------~~~~g~~~--------~~~~~~~~~~~~~vl~iDEid~l~~~~~ 147 (309)
T 3syl_A 87 MAGLLHRLGYVRKGHLVSVTRDDLV-----------GQYIGHTA--------PKTKEVLKRAMGGVLFIDEAYYLYRPDN 147 (309)
T ss_dssp HHHHHHHTTSSSSCCEEEECGGGTC-----------CSSTTCHH--------HHHHHHHHHHTTSEEEEETGGGSCCCC-
T ss_pred HHHHHHhcCCcCCCcEEEEcHHHhh-----------hhcccccH--------HHHHHHHHhcCCCEEEEEChhhhccCCC
Confidence 99988532 3478888877521 12333322 23445555556789999999976
Q ss_pred ----CHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhh
Q 005186 429 ----DVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALV 504 (710)
Q Consensus 429 ----~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~ 504 (710)
+..+++.|+++|+++. .+++||+|+|... +
T Consensus 148 ~~~~~~~~~~~Ll~~l~~~~-----------~~~~~i~~~~~~~------------------~----------------- 181 (309)
T 3syl_A 148 ERDYGQEAIEILLQVMENNR-----------DDLVVILAGYADR------------------M----------------- 181 (309)
T ss_dssp --CCTHHHHHHHHHHHHHCT-----------TTCEEEEEECHHH------------------H-----------------
T ss_pred cccccHHHHHHHHHHHhcCC-----------CCEEEEEeCChHH------------------H-----------------
Confidence 8999999999999753 4678999888310 0
Q ss_pred ccccccccccccccccchhhhhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcc
Q 005186 505 NRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSS 584 (710)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~ 584 (710)
.. .-
T Consensus 182 ------------------~~-----------------------~~----------------------------------- 185 (309)
T 3syl_A 182 ------------------EN-----------------------FF----------------------------------- 185 (309)
T ss_dssp ------------------HH-----------------------HH-----------------------------------
T ss_pred ------------------HH-----------------------HH-----------------------------------
Confidence 00 00
Q ss_pred cccccchhHHhcCcceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhc-----CCCCC-hHHHH
Q 005186 585 ENTKSWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAA-----YLSES-NRVIE 658 (710)
Q Consensus 585 e~~~~f~~efl~RiD~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~-----~~~~G-aR~le 658 (710)
...|.|..|++.+|.|.|++.+++.+++...+... .+.++++++++|+... +.+.| .|.+.
T Consensus 186 ----~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~ 252 (309)
T 3syl_A 186 ----QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ---------NYQMTPEAETALRAYIGLRRNQPHFANARSIR 252 (309)
T ss_dssp ----HHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT---------TCEECHHHHHHHHHHHHHHTTSSSCCHHHHHH
T ss_pred ----hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 11256788999999999999999998887776441 2678999999998852 13445 69999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005186 659 DWLEKVLVRGFLDAQEK 675 (710)
Q Consensus 659 ~~IE~vl~~~L~el~~~ 675 (710)
+.+++.+.....++...
T Consensus 253 ~~l~~a~~~~~~r~~~~ 269 (309)
T 3syl_A 253 NALDRARLRQANRLFTA 269 (309)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999998877777663
No 15
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.63 E-value=2.6e-14 Score=151.81 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=142.9
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
..++|++.++..+...+...+... ++..+++|+||+|||||++|++||+.+ ..+|+.+++.....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~--------~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~---- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRN--------ECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIEK---- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTT--------SCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCCS----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcC--------CCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhccc----
Confidence 459999999999999988765411 234579999999999999999999987 67899988874210
Q ss_pred CCCccccccccccccccccchhhHHHHHHHh-CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCC-------CCeEeec
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS-------YGREVSV 455 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~-------~Gr~vd~ 455 (710)
.+.+...+.. ...+|||||||+.+++.+|+.|+++|+++.+... ....+++
T Consensus 94 ---------------------~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 94 ---------------------SGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp ---------------------HHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred ---------------------hhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 1234444543 5678999999999999999999999999875432 1122344
Q ss_pred CceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCC
Q 005186 456 SNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGR 535 (710)
Q Consensus 456 ~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~ 535 (710)
.+++||++||..
T Consensus 153 ~~~~~i~atn~~-------------------------------------------------------------------- 164 (338)
T 3pfi_A 153 PKFTLIGATTRA-------------------------------------------------------------------- 164 (338)
T ss_dssp CCCEEEEEESCG--------------------------------------------------------------------
T ss_pred CCeEEEEeCCCc--------------------------------------------------------------------
Confidence 457777777730
Q ss_pred CCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCHHHHHHH
Q 005186 536 NDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFDALAEK 615 (710)
Q Consensus 536 ~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~d~Laei 615 (710)
..+.++|+.|++.++.|.|++.+++.++
T Consensus 165 ----------------------------------------------------~~l~~~L~~R~~~~i~l~~~~~~e~~~i 192 (338)
T 3pfi_A 165 ----------------------------------------------------GMLSNPLRDRFGMQFRLEFYKDSELALI 192 (338)
T ss_dssp ----------------------------------------------------GGSCHHHHTTCSEEEECCCCCHHHHHHH
T ss_pred ----------------------------------------------------cccCHHHHhhcCEEeeCCCcCHHHHHHH
Confidence 0244678899999999999999999887
Q ss_pred HHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 005186 616 ILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVL 665 (710)
Q Consensus 616 il~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl 665 (710)
+.+.+.. ..+.++++++++|+. .|. ...|.+.+.++.+.
T Consensus 193 l~~~~~~---------~~~~~~~~~~~~l~~-~~~-G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 193 LQKAALK---------LNKTCEEKAALEIAK-RSR-STPRIALRLLKRVR 231 (338)
T ss_dssp HHHHHHH---------TTCEECHHHHHHHHH-TTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHh---------cCCCCCHHHHHHHHH-HHC-cCHHHHHHHHHHHH
Confidence 7655432 126789999999988 342 24477777777754
No 16
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.56 E-value=1.6e-13 Score=144.26 Aligned_cols=126 Identities=10% Similarity=0.099 Sum_probs=91.6
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.++|++.++..+...+....... +...+++|+||+|||||++|++||+.+ ..+++.++++....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~--------~~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~---- 76 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK--------EPLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEK---- 76 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC--------SCCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCS----
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC--------CCCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCC----
Confidence 458999999999988887654311 123489999999999999999999988 57888888874210
Q ss_pred CCCccccccccccccccccchhhHHHHHHHh--CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCC-------CeEee
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLK--KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY-------GREVS 454 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~--~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~-------Gr~vd 454 (710)
.+.+.+.+.. ...++||||||+.++...|+.|+++|+++.+..-. .....
T Consensus 77 ---------------------~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~ 135 (324)
T 1hqc_A 77 ---------------------PGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLE 135 (324)
T ss_dssp ---------------------HHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEE
T ss_pred ---------------------hHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccC
Confidence 1234445544 45689999999999999999999999988644211 11223
Q ss_pred cCceEEEEccC
Q 005186 455 VSNAIFVTASS 465 (710)
Q Consensus 455 ~~n~I~IlTSN 465 (710)
..++++|++||
T Consensus 136 ~~~~~~i~~t~ 146 (324)
T 1hqc_A 136 LPRFTLIGATT 146 (324)
T ss_dssp CCCCEEEEEES
T ss_pred CCCEEEEEeCC
Confidence 34566777776
No 17
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.50 E-value=2.9e-13 Score=150.91 Aligned_cols=189 Identities=11% Similarity=0.127 Sum_probs=128.2
Q ss_pred CcccccHHHH---HHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCC
Q 005186 304 EKIDWQDEAI---SVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGE 380 (710)
Q Consensus 304 ~~ViGQdeAi---~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e 380 (710)
+.|+||++++ ..|...+...+ ..+++|+||+|||||++|++||+.+ ..+|+.+++...
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~-------------~~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~--- 86 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH-------------LHSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTS--- 86 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC-------------CCEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTC---
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC-------------CcEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccC---
Confidence 5699999999 67777775432 1489999999999999999999988 677888876531
Q ss_pred CCCCCCccccccccccccccccchhhHHHH---HHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCc
Q 005186 381 MNNPPKFYHQVVGGDSVQFRGKTLADYVAW---ELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSN 457 (710)
Q Consensus 381 ~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~---al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n 457 (710)
|.. .+...+.. ........|||||||+.++...|+.|++.|++|.
T Consensus 87 -------------~~~------~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~------------- 134 (447)
T 3pvs_A 87 -------------GVK------EIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT------------- 134 (447)
T ss_dssp -------------CHH------HHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS-------------
T ss_pred -------------CHH------HHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc-------------
Confidence 000 01111111 1123457899999999999999999999999753
Q ss_pred eEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhccCCCC
Q 005186 458 AIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRND 537 (710)
Q Consensus 458 ~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d 537 (710)
++||++|+....
T Consensus 135 v~lI~att~n~~-------------------------------------------------------------------- 146 (447)
T 3pvs_A 135 ITFIGATTENPS-------------------------------------------------------------------- 146 (447)
T ss_dssp CEEEEEESSCGG--------------------------------------------------------------------
T ss_pred eEEEecCCCCcc--------------------------------------------------------------------
Confidence 457766652000
Q ss_pred CCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCHHHHHHHHH
Q 005186 538 NPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFDALAEKIL 617 (710)
Q Consensus 538 ~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~d~Laeiil 617 (710)
..+.+.|+.|+. ++.|.|++.+++..++.
T Consensus 147 --------------------------------------------------~~l~~aL~sR~~-v~~l~~l~~edi~~il~ 175 (447)
T 3pvs_A 147 --------------------------------------------------FELNSALLSRAR-VYLLKSLSTEDIEQVLT 175 (447)
T ss_dssp --------------------------------------------------GSSCHHHHTTEE-EEECCCCCHHHHHHHHH
T ss_pred --------------------------------------------------cccCHHHhCcee-EEeeCCcCHHHHHHHHH
Confidence 023456777876 78899999999999888
Q ss_pred HHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 005186 618 KDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLV 666 (710)
Q Consensus 618 ~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~ 666 (710)
+.+...... + ....+.++++++++|+.. | ....|.+.+.++.++.
T Consensus 176 ~~l~~~~~~-~-~~~~~~i~~~al~~L~~~-~-~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 176 QAMEDKTRG-Y-GGQDIVLPDETRRAIAEL-V-NGDARRALNTLEMMAD 220 (447)
T ss_dssp HHHHCTTTS-S-TTSSEECCHHHHHHHHHH-H-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhh-h-ccccCcCCHHHHHHHHHH-C-CCCHHHHHHHHHHHHH
Confidence 877542221 1 124588999999999997 3 2355888888888763
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.48 E-value=9.2e-13 Score=140.02 Aligned_cols=214 Identities=13% Similarity=0.075 Sum_probs=146.0
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|+|++++++.|..++.........-.+ ..++...+||+||+|||||++|++||+.+ +.+|+.++++....
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~---- 89 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVS---- 89 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHT----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhh----
Confidence 45999999999999888654321100000 11355689999999999999999999998 77899998874211
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH-----------HHHHHHHhhHhCCcccCCCCeE
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV-----------HVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~-----------~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
.++|... .....+.........+||||||||.+.. .+++.|+..|+.-.- .
T Consensus 90 -------~~~g~~~-----~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~----- 151 (322)
T 3eie_A 90 -------KWMGESE-----KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN-D----- 151 (322)
T ss_dssp -------TTGGGHH-----HHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT-S-----
T ss_pred -------cccchHH-----HHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc-c-----
Confidence 2223221 1223455555666679999999998753 568888888874211 1
Q ss_pred eecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhc
Q 005186 453 VSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKL 532 (710)
Q Consensus 453 vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~ 532 (710)
-.+++||+|||...
T Consensus 152 --~~~v~vi~atn~~~---------------------------------------------------------------- 165 (322)
T 3eie_A 152 --SQGVLVLGATNIPW---------------------------------------------------------------- 165 (322)
T ss_dssp --CCCEEEEEEESCGG----------------------------------------------------------------
T ss_pred --CCceEEEEecCChh----------------------------------------------------------------
Confidence 13578888988410
Q ss_pred cCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCHHHH
Q 005186 533 IGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFDAL 612 (710)
Q Consensus 533 ~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~d~L 612 (710)
.+.+.|+.|++..+.|.+++.++.
T Consensus 166 --------------------------------------------------------~ld~al~~Rf~~~i~~~~p~~~~r 189 (322)
T 3eie_A 166 --------------------------------------------------------QLDSAIRRRFERRIYIPLPDLAAR 189 (322)
T ss_dssp --------------------------------------------------------GSCHHHHHHCCEEEECCCCCHHHH
T ss_pred --------------------------------------------------------hCCHHHHcccCeEEEeCCCCHHHH
Confidence 112345668888999999999988
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 005186 613 AEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGFLDAQEK 675 (710)
Q Consensus 613 aeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~~~L~el~~~ 675 (710)
.+++...+. ...+.+++..++.|+.... ..-.+.|+..+.+....++.+....
T Consensus 190 ~~il~~~~~---------~~~~~~~~~~l~~la~~t~-g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 190 TTMFEINVG---------DTPCVLTKEDYRTLGAMTE-GYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp HHHHHHHHT---------TCCCCCCHHHHHHHHHTTT-TCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred HHHHHHHhc---------cCCCCCCHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 877765432 2235578999999988632 1234678888888888888887665
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.48 E-value=1.6e-12 Score=140.38 Aligned_cols=212 Identities=12% Similarity=0.062 Sum_probs=143.5
Q ss_pred cCcccccHHHHHHHHHHHHHHhc---CCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRT---GHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG 379 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~---g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~ 379 (710)
.+.|+|++++++.|..++..... .+... .++...+||+||+|||||++|++||+.+ ..+|+.++++...
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~----~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~- 121 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGN----RKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLV- 121 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSS----CCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHH-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcC----CCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHh-
Confidence 35699999999999888864411 01111 1345589999999999999999999998 6789999887421
Q ss_pred CCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH-----------HHHHHHHhhHhCCcccCC
Q 005186 380 EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV-----------HVQNSLSKAIQTGKLPDS 448 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~-----------~vqn~LLq~LE~G~l~d~ 448 (710)
..++|... .....+.........+||||||||.+.+ .+++.|+..|+.-.-
T Consensus 122 ----------~~~~g~~~-----~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~--- 183 (355)
T 2qp9_X 122 ----------SKWMGESE-----KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN--- 183 (355)
T ss_dssp ----------SCC---CH-----HHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----
T ss_pred ----------hhhcchHH-----HHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc---
Confidence 12233221 1223344555555679999999999863 468888888873211
Q ss_pred CCeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhh
Q 005186 449 YGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLN 528 (710)
Q Consensus 449 ~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (710)
...+++||+|||...
T Consensus 184 -----~~~~v~vI~atn~~~------------------------------------------------------------ 198 (355)
T 2qp9_X 184 -----DSQGVLVLGATNIPW------------------------------------------------------------ 198 (355)
T ss_dssp -------CCEEEEEEESCGG------------------------------------------------------------
T ss_pred -----cCCCeEEEeecCCcc------------------------------------------------------------
Confidence 124688999998410
Q ss_pred hhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCC
Q 005186 529 KRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFN 608 (710)
Q Consensus 529 KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD 608 (710)
.+.+.++.|++..+.+.+++
T Consensus 199 ------------------------------------------------------------~ld~al~rRf~~~i~i~~P~ 218 (355)
T 2qp9_X 199 ------------------------------------------------------------QLDSAIRRRFERRIYIPLPD 218 (355)
T ss_dssp ------------------------------------------------------------GSCHHHHHTCCEEEECCCCC
T ss_pred ------------------------------------------------------------cCCHHHHcccCEEEEeCCcC
Confidence 11134556888899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 005186 609 FDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGFLDAQEK 675 (710)
Q Consensus 609 ~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~~~L~el~~~ 675 (710)
.++..+++...+. ...+.+++..++.|+.... ..-.+.|+..+.+.+..++.+....
T Consensus 219 ~~~r~~il~~~l~---------~~~~~~~~~~l~~la~~t~-G~sg~dl~~l~~~A~~~a~~~~~~~ 275 (355)
T 2qp9_X 219 LAARTTMFEINVG---------DTPSVLTKEDYRTLGAMTE-GYSGSDIAVVVKDALMQPIRKIQSA 275 (355)
T ss_dssp HHHHHHHHHHHHT---------TSCBCCCHHHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh---------hCCCCCCHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9887777655432 1224568999999988632 1235789999999998888876654
No 20
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.46 E-value=6e-13 Score=141.23 Aligned_cols=146 Identities=12% Similarity=-0.013 Sum_probs=78.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC----CcceEEecCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG----KENFICADLCPQDG 379 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs----~~~fI~iD~s~~~~ 379 (710)
+.|+||+.++..+..++. . ....++||+||+|||||++|++||+.+... ..+ ++|.....
T Consensus 24 ~~i~G~~~~~~~l~~~~~---~----------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~~~~~~~ 87 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAV---D----------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VSSPNVEM 87 (350)
T ss_dssp GGSCSCHHHHHHHHHHHH---C----------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TCCSSGGG
T ss_pred hhccChHHHHHHHHHHhh---C----------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccc---cccccccc
Confidence 348999987765433221 1 012369999999999999999999987320 122 23332110
Q ss_pred CCCCC--C----------------Cccccccccccc---cccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHh
Q 005186 380 EMNNP--P----------------KFYHQVVGGDSV---QFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSK 438 (710)
Q Consensus 380 e~~~~--~----------------sl~~~~~~G~~~---~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq 438 (710)
++... . ......++|... .+.+... ....+.+.....+|||||||+++++.+|+.|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~-~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~ 166 (350)
T 1g8p_A 88 IPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEK-AFEPGLLARANRGYLYIDECNLLEDHIVDLLLD 166 (350)
T ss_dssp SCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGG-GEECCHHHHHTTEEEEETTGGGSCHHHHHHHHH
T ss_pred ccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCce-eecCceeeecCCCEEEEeChhhCCHHHHHHHHH
Confidence 00000 0 000001112100 0000000 000011122236899999999999999999999
Q ss_pred hHhCCc--ccCCCCeEeecCceEEEEccCC
Q 005186 439 AIQTGK--LPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 439 ~LE~G~--l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
+|++|. +....+....-.+++||+|+|.
T Consensus 167 ~le~~~~~~~~~g~~~~~~~~~~li~~~n~ 196 (350)
T 1g8p_A 167 VAQSGENVVERDGLSIRHPARFVLVGSGNP 196 (350)
T ss_dssp HHHHSEEEECCTTCCEEEECCEEEEEEECS
T ss_pred HHhcCceEEEecceEEeeCCceEEEEEeCC
Confidence 999985 3332222111236778888883
No 21
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.1e-11 Score=132.18 Aligned_cols=215 Identities=12% Similarity=0.024 Sum_probs=144.1
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|+|++++++.|.+++.........-.+ ..++...+||+||+|||||++|++||+.+. ..+|+.++++....
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~---- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVS---- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHh----
Confidence 46999999999999888653211000000 012446899999999999999999999873 46889998885211
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HHHHHHHHhhHhCCcccCCCCeE
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
.++|... .....+.+..+....+||||||||.+. ..+++.|+..|+.-..
T Consensus 85 -------~~~g~~~-----~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~------- 145 (322)
T 1xwi_A 85 -------KWLGESE-----KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV------- 145 (322)
T ss_dssp -------SSCCSCH-----HHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS-------
T ss_pred -------hhhhHHH-----HHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc-------
Confidence 2333322 122345555556667999999999872 3567788888874221
Q ss_pred eecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhc
Q 005186 453 VSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKL 532 (710)
Q Consensus 453 vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~ 532 (710)
.-.+++||+|||...
T Consensus 146 -~~~~v~vI~atn~~~---------------------------------------------------------------- 160 (322)
T 1xwi_A 146 -DNDGILVLGATNIPW---------------------------------------------------------------- 160 (322)
T ss_dssp -CCTTEEEEEEESCTT----------------------------------------------------------------
T ss_pred -cCCCEEEEEecCCcc----------------------------------------------------------------
Confidence 124688999998410
Q ss_pred cCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCHHHH
Q 005186 533 IGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFDAL 612 (710)
Q Consensus 533 ~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~d~L 612 (710)
.+.+.|+.|++..+.+.+.+.+..
T Consensus 161 --------------------------------------------------------~ld~al~rRf~~~i~i~~P~~~~r 184 (322)
T 1xwi_A 161 --------------------------------------------------------VLDSAIRRRFEKRIYIPLPEPHAR 184 (322)
T ss_dssp --------------------------------------------------------TSCHHHHHTCCEEEECCCCCHHHH
T ss_pred --------------------------------------------------------cCCHHHHhhcCeEEEeCCcCHHHH
Confidence 011345668888999999998887
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 005186 613 AEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGFLDAQEK 675 (710)
Q Consensus 613 aeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~~~L~el~~~ 675 (710)
.+++...+. ...+.+++..++.|+.... ..-.+.|+..+.+....++.+....
T Consensus 185 ~~il~~~l~---------~~~~~l~~~~l~~la~~t~-G~sgadl~~l~~~A~~~a~r~~~~~ 237 (322)
T 1xwi_A 185 AAMFKLHLG---------TTQNSLTEADFRELGRKTD-GYSGADISIIVRDALMQPVRKVQSA 237 (322)
T ss_dssp HHHHHHHHT---------TCCBCCCHHHHHHHHHTCT-TCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred HHHHHHHHh---------cCCCCCCHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 777655432 2224568999999988632 2235689999999988888887653
No 22
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.45 E-value=9.8e-13 Score=148.55 Aligned_cols=147 Identities=17% Similarity=0.046 Sum_probs=100.6
Q ss_pred hHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEE
Q 005186 292 LSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 371 (710)
Q Consensus 292 ~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~ 371 (710)
.+.+..|.+.|...|+||+++++.+..++.. ..++||+||||||||++|++||..+ +...+|..
T Consensus 10 ~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~ 73 (500)
T 3nbx_X 10 AERISRLSSSLEKGLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAF-QNARAFEY 73 (500)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGB-SSCCEEEE
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHH-hhhhHHHH
Confidence 4578899999999999999999877666542 1389999999999999999999877 44567777
Q ss_pred ecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhC--CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCC
Q 005186 372 ADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK--PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 372 iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~--p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~ 449 (710)
+++.. .. +..++|...++... ..+.+..+.... ..+|+|||||+++++.+|+.|+++|++|.+.. .
T Consensus 74 ~~~~~-----~t-----~~dL~G~~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i-~ 141 (500)
T 3nbx_X 74 LMTRF-----ST-----PEEVFGPLSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN-G 141 (500)
T ss_dssp ECCTT-----CC-----HHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC-S
T ss_pred HHHhc-----CC-----HHHhcCcccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC-C
Confidence 77762 11 12333321111000 000110000000 14699999999999999999999999999876 4
Q ss_pred CeEeecCceEEEEccCC
Q 005186 450 GREVSVSNAIFVTASSF 466 (710)
Q Consensus 450 Gr~vd~~n~I~IlTSN~ 466 (710)
|....+..-++|+|||.
T Consensus 142 G~~~~~~~~~iI~ATN~ 158 (500)
T 3nbx_X 142 AHVEKIPMRLLVAASNE 158 (500)
T ss_dssp SSEEECCCCEEEEEESS
T ss_pred CCcCCcchhhhhhcccc
Confidence 55566665567888884
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.45 E-value=2e-12 Score=140.95 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=89.6
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|+|++.++..|...+.........-.+ ...+...+||+||+|||||++|++||+.+ +.+|+.++|+....
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~---- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTG-LRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTS---- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCG-GGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcc-cCCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhc----
Confidence 45999999999999888654321110000 00234589999999999999999999987 68999999985321
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----------CHHHHHHHHhhHhCCcccCCCCeE
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-----------~~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
.|.|... .....+.+.......+||||||||.+ ...+++.|+..|+...-.
T Consensus 187 -------~~~g~~~-----~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------ 248 (389)
T 3vfd_A 187 -------KYVGEGE-----KLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA------ 248 (389)
T ss_dssp ------------CH-----HHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--------
T ss_pred -------cccchHH-----HHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc------
Confidence 2233221 12234455555566689999999988 467788888888732211
Q ss_pred eecCceEEEEccCC
Q 005186 453 VSVSNAIFVTASSF 466 (710)
Q Consensus 453 vd~~n~I~IlTSN~ 466 (710)
.-.+++||+|||.
T Consensus 249 -~~~~v~vI~atn~ 261 (389)
T 3vfd_A 249 -GDDRVLVMGATNR 261 (389)
T ss_dssp ----CEEEEEEESC
T ss_pred -CCCCEEEEEecCC
Confidence 1136789999984
No 24
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.45 E-value=1e-12 Score=138.28 Aligned_cols=135 Identities=9% Similarity=0.043 Sum_probs=81.3
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcc
Q 005186 309 QDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY 388 (710)
Q Consensus 309 QdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~ 388 (710)
-+..+..++..+.+....... .+++..+||+||||||||++|++||+.+ +.+|+.++++....
T Consensus 12 ~~~~~~~~~~~~~k~~l~~~~-----~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~--------- 74 (293)
T 3t15_A 12 APAFMDKLVVHITKNFLKLPN-----IKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELES--------- 74 (293)
T ss_dssp CHHHHHHHHHHHHHTTSCCTT-----CCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHC---------
T ss_pred CHHHHHHHHHHHHHHHHhcCC-----CCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhh---------
Confidence 344445555555444332221 1345689999999999999999999999 78999999985211
Q ss_pred ccccccccccccccchhhHHHHH---HHhCCCeEEEEeccccCCH-------------HHHHHHHhhHhCCcccCCCC--
Q 005186 389 HQVVGGDSVQFRGKTLADYVAWE---LLKKPLSVVYLENVDKADV-------------HVQNSLSKAIQTGKLPDSYG-- 450 (710)
Q Consensus 389 ~~~~~G~~~~f~G~t~~~~L~~a---l~~~p~sVI~LDEIDKa~~-------------~vqn~LLq~LE~G~l~d~~G-- 450 (710)
.|+|...+ .+...+..+ ++....+||||||||++.+ .+++.|+++|+...+....|
T Consensus 75 --~~~g~~~~----~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~ 148 (293)
T 3t15_A 75 --GNAGEPAK----LIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 148 (293)
T ss_dssp --C---HHHH----HHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC--------
T ss_pred --ccCchhHH----HHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhcccccccccccc
Confidence 23333221 111112111 2455779999999998865 47799999999776543322
Q ss_pred eEeecCceEEEEccCC
Q 005186 451 REVSVSNAIFVTASSF 466 (710)
Q Consensus 451 r~vd~~n~I~IlTSN~ 466 (710)
......+++||+|||.
T Consensus 149 ~~~~~~~v~vI~ttN~ 164 (293)
T 3t15_A 149 NKQENARVPIIVTGND 164 (293)
T ss_dssp ---CCCCCCEEEECSS
T ss_pred ccccCCCcEEEEecCC
Confidence 4456678999999995
No 25
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.44 E-value=2.4e-13 Score=156.81 Aligned_cols=56 Identities=21% Similarity=0.168 Sum_probs=42.7
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
..++||+.+++.|..++.. ...++|+||+|+|||++|++||..+.......+.+++
T Consensus 41 ~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred ceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 4599999999888777652 1279999999999999999999988544433444433
No 26
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.44 E-value=2.1e-13 Score=128.38 Aligned_cols=114 Identities=12% Similarity=0.019 Sum_probs=86.7
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.++|++.++..+...+..... ...+++|+||+|||||++|++||+.....+.+|+ ++|+.....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 589999999999988876632 2348999999999999999999998877778999 999863210
Q ss_pred CCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEcc
Q 005186 385 PKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTAS 464 (710)
Q Consensus 385 ~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTS 464 (710)
..+.+.+.....++|||||||.+++.+|..|+++|+... .++.+|+||
T Consensus 66 ---------------------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~-----------~~~~~I~~t 113 (145)
T 3n70_A 66 ---------------------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-----------RPFRLIGIG 113 (145)
T ss_dssp ---------------------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSSS-----------CSSCEEEEE
T ss_pred ---------------------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhcC-----------CCEEEEEEC
Confidence 012233333356899999999999999999999994321 234599999
Q ss_pred CC
Q 005186 465 SF 466 (710)
Q Consensus 465 N~ 466 (710)
|.
T Consensus 114 ~~ 115 (145)
T 3n70_A 114 DT 115 (145)
T ss_dssp SS
T ss_pred Cc
Confidence 96
No 27
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.42 E-value=5.4e-13 Score=141.51 Aligned_cols=138 Identities=13% Similarity=0.126 Sum_probs=96.0
Q ss_pred HhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEe
Q 005186 293 SNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICA 372 (710)
Q Consensus 293 ~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~i 372 (710)
..+..+...+...|+||++++..+..++... .+++|+||+|||||++|++||+.+ ..+++.+
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~---------------~~vll~G~pGtGKT~la~~la~~~---~~~~~~i 77 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTG---------------GHILLEGVPGLAKTLSVNTLAKTM---DLDFHRI 77 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT---------------CCEEEESCCCHHHHHHHHHHHHHT---TCCEEEE
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHcC---------------CeEEEECCCCCcHHHHHHHHHHHh---CCCeEEE
Confidence 3567788889999999999998887766531 279999999999999999999988 5678888
Q ss_pred cCCCCCCCCCCCCCcccccccccccc--ccccc-h-hhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCC
Q 005186 373 DLCPQDGEMNNPPKFYHQVVGGDSVQ--FRGKT-L-ADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS 448 (710)
Q Consensus 373 D~s~~~~e~~~~~sl~~~~~~G~~~~--f~G~t-~-~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~ 448 (710)
+|... . .+..+.|.... ..|.. + .+.+ ..+|+|||||+++++.+++.|+++|+++.+..
T Consensus 78 ~~~~~----~-----~~~~l~g~~~~~~~~~~~~~~~g~l-------~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~- 140 (331)
T 2r44_A 78 QFTPD----L-----LPSDLIGTMIYNQHKGNFEVKKGPV-------FSNFILADEVNRSPAKVQSALLECMQEKQVTI- 140 (331)
T ss_dssp ECCTT----C-----CHHHHHEEEEEETTTTEEEEEECTT-------CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE-
T ss_pred ecCCC----C-----ChhhcCCceeecCCCCceEeccCcc-------cccEEEEEccccCCHHHHHHHHHHHhcCceee-
Confidence 87531 0 01111221100 00000 0 0001 13799999999999999999999999998776
Q ss_pred CCeEeecC-ceEEEEccC
Q 005186 449 YGREVSVS-NAIFVTASS 465 (710)
Q Consensus 449 ~Gr~vd~~-n~I~IlTSN 465 (710)
.|..+... +.+||+|+|
T Consensus 141 ~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 141 GDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp TTEEEECCSSCEEEEEEC
T ss_pred CCEEEECCCCEEEEEecC
Confidence 35555444 466777777
No 28
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.42 E-value=5.2e-12 Score=135.26 Aligned_cols=225 Identities=12% Similarity=0.073 Sum_probs=135.5
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
.+.++||+.++..+...+.....+.. +...+||+||+|+|||++|++||+.+. ...+++.+++...-..+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~--------~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~ 113 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKI--------AGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSEIFSLEM 113 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC--------TTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGGGSCSSS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCC--------CCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchhhhhccc
Confidence 34699999999887766666554321 234899999999999999999999983 345788887664110000
Q ss_pred CCCCc-------------------------------cccccccccccccc---cchhhHHHHHHH----hCC----CeEE
Q 005186 383 NPPKF-------------------------------YHQVVGGDSVQFRG---KTLADYVAWELL----KKP----LSVV 420 (710)
Q Consensus 383 ~~~sl-------------------------------~~~~~~G~~~~f~G---~t~~~~L~~al~----~~p----~sVI 420 (710)
..... .+.++.+.-.+..| ......+..+.. ... .+||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl 193 (368)
T 3uk6_A 114 SKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVL 193 (368)
T ss_dssp CHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEE
T ss_pred chhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceE
Confidence 00000 00111111111111 011112222221 111 3699
Q ss_pred EEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhh
Q 005186 421 YLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIE 500 (710)
Q Consensus 421 ~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~ 500 (710)
|||||+.+++.+++.|++++++... . ++|+++|.+... |.
T Consensus 194 ~IDEi~~l~~~~~~~L~~~le~~~~-----------~-~~ii~t~~~~~~----------------------------i~ 233 (368)
T 3uk6_A 194 FIDEVHMLDIESFSFLNRALESDMA-----------P-VLIMATNRGITR----------------------------IR 233 (368)
T ss_dssp EEESGGGSBHHHHHHHHHHTTCTTC-----------C-EEEEEESCSEEE----------------------------CB
T ss_pred EEhhccccChHHHHHHHHHhhCcCC-----------C-eeeeecccceee----------------------------ee
Confidence 9999999999999999999986431 2 355555533111 00
Q ss_pred hhhhccccccccccccccccchhhhhhhhhhccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCC
Q 005186 501 PALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRN 580 (710)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KRk~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~ 580 (710)
. . . .|
T Consensus 234 ~---------------------t------------~------------------------~~------------------ 238 (368)
T 3uk6_A 234 G---------------------T------------S------------------------YQ------------------ 238 (368)
T ss_dssp T---------------------S------------S------------------------CE------------------
T ss_pred c---------------------c------------C------------------------CC------------------
Confidence 0 0 0 00
Q ss_pred CCcccccccchhHHhcCcceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHH
Q 005186 581 SDSSENTKSWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDW 660 (710)
Q Consensus 581 d~~~e~~~~f~~efl~RiD~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~ 660 (710)
....+.+.|+.|+.. |.|.|++.+++.+++...+... + +.++++++++|+..+|. ...|.+.+.
T Consensus 239 -----~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~~-------~--~~~~~~~l~~l~~~~~~-G~~r~~~~l 302 (368)
T 3uk6_A 239 -----SPHGIPIDLLDRLLI-VSTTPYSEKDTKQILRIRCEEE-------D--VEMSEDAYTVLTRIGLE-TSLRYAIQL 302 (368)
T ss_dssp -----EETTCCHHHHTTEEE-EEECCCCHHHHHHHHHHHHHHT-------T--CCBCHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred -----CcccCCHHHHhhccE-EEecCCCHHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHHhcC-CCHHHHHHH
Confidence 001456788999975 7999999999999887765431 2 56899999999997642 335677777
Q ss_pred HHHHHHH
Q 005186 661 LEKVLVR 667 (710)
Q Consensus 661 IE~vl~~ 667 (710)
++.....
T Consensus 303 l~~a~~~ 309 (368)
T 3uk6_A 303 ITAASLV 309 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
No 29
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.42 E-value=1.4e-11 Score=136.99 Aligned_cols=213 Identities=11% Similarity=0.022 Sum_probs=142.8
Q ss_pred CcccccHHHHHHHHHHHHHHhc--CCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRT--GHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~--g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~ 381 (710)
+.|+|+++++..|..++..... ...... .++...+||+||+|||||++|++||..+. ..+|+.++++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~---~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~--- 205 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGK---RTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLV--- 205 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGG---GCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhcc---CCCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHH---
Confidence 4599999999999888754321 000000 12446899999999999999999999873 4689999888521
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HHHHHHHHhhHhCCcccCCCC
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKLPDSYG 450 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~vqn~LLq~LE~G~l~d~~G 450 (710)
..++|.... ....+.........+||||||||.+. ..+++.|+..|+.-..
T Consensus 206 --------~~~~g~~~~-----~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~----- 267 (444)
T 2zan_A 206 --------SKWLGESEK-----LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV----- 267 (444)
T ss_dssp --------------CCC-----THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC-----
T ss_pred --------hhhcchHHH-----HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc-----
Confidence 123333222 22445555566667999999999882 4678888888764221
Q ss_pred eEeecCceEEEEccCCCccccccccccccccchHHHHHHHhhhhhhhhhhhhhhccccccccccccccccchhhhhhhhh
Q 005186 451 REVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKR 530 (710)
Q Consensus 451 r~vd~~n~I~IlTSN~g~~~~~~~~~~~~~~f~eeki~~~k~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KR 530 (710)
.-.+++||+|||...
T Consensus 268 ---~~~~v~vI~atn~~~-------------------------------------------------------------- 282 (444)
T 2zan_A 268 ---DNDGILVLGATNIPW-------------------------------------------------------------- 282 (444)
T ss_dssp ---CCSSCEEEEEESCGG--------------------------------------------------------------
T ss_pred ---CCCCEEEEecCCCcc--------------------------------------------------------------
Confidence 124688999998410
Q ss_pred hccCCCCCCCCCChHHHHHhhccCCCCccCCCCCcchhhhhhcCCCCCCCCCcccccccchhHHhcCcceeeecCCCCHH
Q 005186 531 KLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFD 610 (710)
Q Consensus 531 k~~~~~d~~e~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~d~~~~~~d~~~e~~~~f~~efl~RiD~iVvF~PLD~d 610 (710)
.+.+.|+.|++.++.+.+.+.+
T Consensus 283 ----------------------------------------------------------~ld~al~rRf~~~i~i~~P~~~ 304 (444)
T 2zan_A 283 ----------------------------------------------------------VLDSAIRRRFEKRIYIPLPEAH 304 (444)
T ss_dssp ----------------------------------------------------------GSCHHHHTTCCEEEECCCCCHH
T ss_pred ----------------------------------------------------------ccCHHHHhhcceEEEeCCcCHH
Confidence 1123466688888889888988
Q ss_pred HHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 005186 611 ALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGFLDAQEK 675 (710)
Q Consensus 611 ~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~~~L~el~~~ 675 (710)
...+++...+. ...+.+++..++.|+... ...-.+.|+..+.+.+..++.++...
T Consensus 305 ~r~~il~~~l~---------~~~~~l~~~~l~~la~~t-~G~sgadl~~l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 305 ARAAMFRLHLG---------STQNSLTEADFQELGRKT-DGYSGADISIIVRDALMQPVRKVQSA 359 (444)
T ss_dssp HHHHHHHHHHT---------TSCEECCHHHHHHHHHHT-TTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHh---------cCCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 87776655432 223567899999998863 22245789999999998888887654
No 30
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=4.6e-12 Score=138.98 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=90.1
Q ss_pred CcccccHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~--------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+.|.|.+++++.|.++|... +.|.. ++..+||+||||||||++|+|||..+ +.+|+.++++
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~--------~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s 216 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIA--------QPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGA 216 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC--------CCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC--------CCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhH
Confidence 45999999999998888652 22333 33479999999999999999999999 7899999998
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH--------------HHHHHHHhhHh
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV--------------HVQNSLSKAIQ 441 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~--------------~vqn~LLq~LE 441 (710)
..- ..|+|..+ ..+..+....+....+||||||||.+-+ .+.+.||..|+
T Consensus 217 ~l~-----------sk~vGese-----~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 280 (405)
T 4b4t_J 217 ELV-----------QKYIGEGS-----RMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLD 280 (405)
T ss_dssp GGS-----------CSSTTHHH-----HHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHH
T ss_pred Hhh-----------ccccchHH-----HHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhh
Confidence 521 13344322 2234455555666679999999997632 24566666666
Q ss_pred CCcccCCCCeEeecCceEEEEccCC
Q 005186 442 TGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 442 ~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.-. . -.+++||+|||.
T Consensus 281 g~~---~------~~~V~vIaATNr 296 (405)
T 4b4t_J 281 GFE---T------SKNIKIIMATNR 296 (405)
T ss_dssp TTT---C------CCCEEEEEEESC
T ss_pred ccC---C------CCCeEEEeccCC
Confidence 321 1 146889999995
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.41 E-value=1.1e-11 Score=133.71 Aligned_cols=149 Identities=11% Similarity=0.095 Sum_probs=96.1
Q ss_pred chHhHHHHHHHhc--------CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 291 DLSNWKTLFRALT--------EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 291 d~~~lk~L~k~L~--------~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
+......+.+.+. +.|+|++++++.|...+.........-.+ ..++...+||+||+|||||++|++||+.+
T Consensus 63 ~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTG-LRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCG-GGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhh-ccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4444455555553 56999999999999888753211000000 01234589999999999999999999987
Q ss_pred cCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HH
Q 005186 363 YGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VH 431 (710)
Q Consensus 363 ~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~ 431 (710)
+.+|+.++++.... .+.|... .....+.........+||||||||.+. ..
T Consensus 142 ---~~~~~~i~~~~l~~-----------~~~g~~~-----~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 202 (357)
T 3d8b_A 142 ---GATFFSISASSLTS-----------KWVGEGE-----KMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRR 202 (357)
T ss_dssp ---TCEEEEEEGGGGCC-----------SSTTHHH-----HHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHH
T ss_pred ---CCeEEEEehHHhhc-----------cccchHH-----HHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHH
Confidence 67899999985211 1222211 112334455555667999999998762 36
Q ss_pred HHHHHHhhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 432 VQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 432 vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
+++.|+..|+...... -.+++||+|||.
T Consensus 203 ~~~~lL~~l~~~~~~~-------~~~v~vI~atn~ 230 (357)
T 3d8b_A 203 IKTEFLVQLDGATTSS-------EDRILVVGATNR 230 (357)
T ss_dssp HHHHHHHHHHC----C-------CCCEEEEEEESC
T ss_pred HHHHHHHHHhcccccC-------CCCEEEEEecCC
Confidence 7888888888543211 136789999984
No 32
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.38 E-value=5.6e-12 Score=132.85 Aligned_cols=127 Identities=18% Similarity=0.187 Sum_probs=88.4
Q ss_pred CcccccHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~--------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+.|+|++++++.|...+... ..+. ++...++|+||+|||||++|++||..+ ..+|+.++++
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~--------~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM--------TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC--------CCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC--------CCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhH
Confidence 35999999999999888653 1222 233489999999999999999999988 6789999887
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH--------------HHHHHHHhhHh
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV--------------HVQNSLSKAIQ 441 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~--------------~vqn~LLq~LE 441 (710)
... ..++|.... ....+.........+||||||||.+.+ .+++.|++.|+
T Consensus 84 ~l~-----------~~~~g~~~~-----~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 84 ELL-----------TMWFGESEA-----NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 147 (301)
T ss_dssp HHH-----------HHHHTTCTT-----HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH
T ss_pred HHH-----------hhhcCchHH-----HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh
Confidence 421 123333221 122334444445569999999997654 35788999998
Q ss_pred CCcccCCCCeEeecCceEEEEccCC
Q 005186 442 TGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 442 ~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.-. . -.+++||+|||.
T Consensus 148 ~~~--~-------~~~v~vi~atn~ 163 (301)
T 3cf0_A 148 GMS--T-------KKNVFIIGATNR 163 (301)
T ss_dssp SSC--T-------TSSEEEEEEESC
T ss_pred ccc--C-------CCCEEEEEecCC
Confidence 421 1 146889999984
No 33
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.38 E-value=6.8e-12 Score=138.32 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=88.4
Q ss_pred CcccccHHHHHHHHHHHHHHh--------cCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQRR--------TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r--------~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+.|.|.+++++.|.+.|.... .|. +++-.+||+||||||||++|+|||..+ +.+|+.++++
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi--------~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s 250 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGI--------KPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGS 250 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC--------CCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESG
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC--------CCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHH
Confidence 459999999999999886531 232 234579999999999999999999999 7899999988
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HH---HHHHHHhhHh
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VH---VQNSLSKAIQ 441 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~---vqn~LLq~LE 441 (710)
..- ..|+|..+ ..+..+....++...+||||||||.+- .. +.+.||..|+
T Consensus 251 ~l~-----------sk~vGese-----k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 251 ELI-----------QKYLGDGP-----RLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp GGC-----------CSSSSHHH-----HHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred Hhh-----------hccCchHH-----HHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 521 13344322 223445555566666999999999752 23 3445555555
Q ss_pred CCcccCCCCeEeecCceEEEEccCC
Q 005186 442 TGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 442 ~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.- +. -.+++||+|||.
T Consensus 315 g~---~~------~~~ViVIaATNr 330 (437)
T 4b4t_I 315 GF---DD------RGDVKVIMATNK 330 (437)
T ss_dssp HC---CC------SSSEEEEEEESC
T ss_pred Cc---CC------CCCEEEEEeCCC
Confidence 21 11 246899999995
No 34
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.37 E-value=2.5e-13 Score=127.81 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=85.3
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~ 384 (710)
.++|++++++.+.+.+..... ...+++|+||+|||||++|++||+.. . +|+.++|+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~---~-~~~~~~~~~~~~----- 64 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNG---T-PWVSPARVEYLI----- 64 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTT---S-CEECCSSTTHHH-----
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhC---C-CeEEechhhCCh-----
Confidence 589999999999888876642 23479999999999999999999866 2 899999885210
Q ss_pred CCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEcc
Q 005186 385 PKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTAS 464 (710)
Q Consensus 385 ~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTS 464 (710)
....+.+.....++|||||||.+++..|..|+++|+++. -.++.+|+||
T Consensus 65 ---------------------~~~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~----------~~~~~iI~~t 113 (143)
T 3co5_A 65 ---------------------DMPMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE----------RCRVRVIASC 113 (143)
T ss_dssp ---------------------HCHHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT----------TTTCEEEEEE
T ss_pred ---------------------HhhhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC----------CCCEEEEEec
Confidence 012334445557899999999999999999999999763 1356799999
Q ss_pred CCC
Q 005186 465 SFV 467 (710)
Q Consensus 465 N~g 467 (710)
|..
T Consensus 114 n~~ 116 (143)
T 3co5_A 114 SYA 116 (143)
T ss_dssp EEC
T ss_pred CCC
Confidence 963
No 35
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.37 E-value=2.5e-11 Score=126.41 Aligned_cols=137 Identities=15% Similarity=0.116 Sum_probs=89.0
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|+|++++++.|...+.........-.+ ...+...++|+||+|||||++|++||..+ ..+|+.++++....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~---- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTG-LRAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTS---- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCG-GGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSS----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhc-CCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhh----
Confidence 45999999999998888654320000000 00234589999999999999999999988 67899999985321
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----------CHHHHHHHHhhHhCCcccCCCCeE
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-----------~~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
.+.|.. ......+.........+||||||||.+ ...+++.|+..++......
T Consensus 93 -------~~~~~~-----~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~----- 155 (297)
T 3b9p_A 93 -------KYVGDG-----EKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP----- 155 (297)
T ss_dssp -------SSCSCH-----HHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------
T ss_pred -------cccchH-----HHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC-----
Confidence 122221 112233444455566799999999887 3567788888887533211
Q ss_pred eecCceEEEEccCC
Q 005186 453 VSVSNAIFVTASSF 466 (710)
Q Consensus 453 vd~~n~I~IlTSN~ 466 (710)
.-.+++||+|||.
T Consensus 156 -~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 156 -DGDRIVVLAATNR 168 (297)
T ss_dssp ----CEEEEEEESC
T ss_pred -CCCcEEEEeecCC
Confidence 1135788888884
No 36
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.37 E-value=2.3e-11 Score=118.61 Aligned_cols=118 Identities=21% Similarity=0.376 Sum_probs=81.9
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC--CcceEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG--KENFICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs--~~~fI~iD~s~~~~e~ 381 (710)
..++|++++++.+...+... ...+++|+||+|+|||++|+++++.+... ...++.++++....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 81 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG-- 81 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC--
T ss_pred HHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC--
Confidence 45899999998888777531 11259999999999999999999987432 34567776653100
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHH-----hCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecC
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELL-----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 456 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~-----~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~ 456 (710)
.. .....+..... .....||||||++.++...++.|++++++.. .
T Consensus 82 -------------~~------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-----------~ 131 (226)
T 2chg_A 82 -------------ID------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-----------K 131 (226)
T ss_dssp -------------HH------HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-----------T
T ss_pred -------------hH------HHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcC-----------C
Confidence 00 01112222222 2456899999999999999999999998631 3
Q ss_pred ceEEEEccCC
Q 005186 457 NAIFVTASSF 466 (710)
Q Consensus 457 n~I~IlTSN~ 466 (710)
+++||+|+|.
T Consensus 132 ~~~~i~~~~~ 141 (226)
T 2chg_A 132 SCRFILSCNY 141 (226)
T ss_dssp TEEEEEEESC
T ss_pred CCeEEEEeCC
Confidence 5678888873
No 37
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.36 E-value=6.4e-12 Score=132.69 Aligned_cols=115 Identities=10% Similarity=0.072 Sum_probs=85.5
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.++||++++..+...+... +.+..+||.||+|+|||++|++||+.+ ..+++.++++...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~------------~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~----- 85 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG------------KIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCK----- 85 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT------------CCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCC-----
T ss_pred HHHhCcHHHHHHHHHHHHcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccC-----
Confidence 56899999998888887621 233578999999999999999999988 6788888877410
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhC----CCeEEEEeccccCC-HHHHHHHHhhHhCCcccCCCCeEeecCce
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKAD-VHVQNSLSKAIQTGKLPDSYGREVSVSNA 458 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~-~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~ 458 (710)
. ......+.+..... .+.||||||||.+. ...++.|+++|++.. .++
T Consensus 86 -------------~----~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~-----------~~~ 137 (324)
T 3u61_B 86 -------------I----DFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS-----------SNC 137 (324)
T ss_dssp -------------H----HHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG-----------GGC
T ss_pred -------------H----HHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC-----------CCc
Confidence 0 01112233333322 46899999999999 999999999998632 457
Q ss_pred EEEEccCC
Q 005186 459 IFVTASSF 466 (710)
Q Consensus 459 I~IlTSN~ 466 (710)
+||+|+|.
T Consensus 138 ~iI~~~n~ 145 (324)
T 3u61_B 138 SIIITANN 145 (324)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 79999984
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.36 E-value=3.5e-11 Score=122.36 Aligned_cols=137 Identities=15% Similarity=0.206 Sum_probs=79.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|+|++++++.|...+.......... ....+....++|+||+|||||++|++||+.+ ..+++.++++....
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~---- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFL-QLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVE---- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC-------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSS----
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHH-HcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHh----
Confidence 569999999999988776543211100 0001234579999999999999999999988 67899999985211
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC------------CHHHHHHHHhhHhCCcccCCCCe
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA------------DVHVQNSLSKAIQTGKLPDSYGR 451 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa------------~~~vqn~LLq~LE~G~l~d~~Gr 451 (710)
.+.|.. ......+.........+||||||||.+ +...+..|.++++. +.. .+
T Consensus 78 -------~~~~~~-----~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~-~~- 141 (262)
T 2qz4_A 78 -------VIGGLG-----AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVE--MDG-MG- 141 (262)
T ss_dssp -------SSTTHH-----HHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHH--HHT-CC-
T ss_pred -------hccChh-----HHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHH--hhC-cC-
Confidence 111111 111223344444455699999999998 33344444444431 000 00
Q ss_pred EeecCceEEEEccCC
Q 005186 452 EVSVSNAIFVTASSF 466 (710)
Q Consensus 452 ~vd~~n~I~IlTSN~ 466 (710)
.-.+++||+|||.
T Consensus 142 --~~~~~~vi~~tn~ 154 (262)
T 2qz4_A 142 --TTDHVIVLASTNR 154 (262)
T ss_dssp --TTCCEEEEEEESC
T ss_pred --CCCCEEEEecCCC
Confidence 0136789999884
No 39
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=2.2e-11 Score=127.41 Aligned_cols=118 Identities=19% Similarity=0.332 Sum_probs=82.9
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCC--cceEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK--ENFICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~--~~fI~iD~s~~~~e~ 381 (710)
+.++||+++++.+...+...+ ..+++|+||+|+|||++|+++|+.+.+.. ..++.++++...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~-------------~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~--- 88 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS-------------MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER--- 88 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC-------------CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH---
T ss_pred HHhhCCHHHHHHHHHHHHcCC-------------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC---
Confidence 459999999999887776421 12599999999999999999999885432 346667665310
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHHh-----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecC
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK-----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 456 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~ 456 (710)
|.+ .....+.+.... ..+.||||||+|.++...++.|+++|++.. .
T Consensus 89 ------------~~~------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-----------~ 139 (327)
T 1iqp_A 89 ------------GIN------VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-----------S 139 (327)
T ss_dssp ------------HHH------TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-----------T
T ss_pred ------------chH------HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcC-----------C
Confidence 000 001122222222 346899999999999999999999999642 3
Q ss_pred ceEEEEccCC
Q 005186 457 NAIFVTASSF 466 (710)
Q Consensus 457 n~I~IlTSN~ 466 (710)
+++||+++|.
T Consensus 140 ~~~~i~~~~~ 149 (327)
T 1iqp_A 140 NVRFILSCNY 149 (327)
T ss_dssp TEEEEEEESC
T ss_pred CCeEEEEeCC
Confidence 5678888873
No 40
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.3e-11 Score=137.00 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=87.1
Q ss_pred CcccccHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~--------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+.|.|.+++++.|.+.|... +.|. +++..+||+||||||||++|+|||..+ +.+|+.++++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~--------~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s 249 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGI--------RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAP 249 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC--------CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC--------CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehh
Confidence 45999999999998887643 2233 234589999999999999999999999 7899999998
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----------CHH---HHHHHHhhHh
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVH---VQNSLSKAIQ 441 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-----------~~~---vqn~LLq~LE 441 (710)
..- ..|+|..+ ..+..+....+....+||||||||.+ +.. +.+.||..|+
T Consensus 250 ~l~-----------~~~vGese-----~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 250 QLV-----------QMYIGEGA-----KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp GGC-----------SSCSSHHH-----HHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred hhh-----------hcccchHH-----HHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 521 13344322 22344555455555699999999964 123 3455666665
Q ss_pred CCcccCCCCeEeecCceEEEEccCC
Q 005186 442 TGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 442 ~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.-. + -.+++||+|||.
T Consensus 314 g~~---~------~~~ViVIaaTNr 329 (434)
T 4b4t_M 314 GFS---S------DDRVKVLAATNR 329 (434)
T ss_dssp TSC---S------SCSSEEEEECSS
T ss_pred ccC---C------CCCEEEEEeCCC
Confidence 321 1 136889999995
No 41
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.35 E-value=2.9e-11 Score=134.46 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=88.3
Q ss_pred CcccccHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~--------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+.|.|.+++++.|.+.|... +.|+. ++-.+||+||||||||++|++||..+ +.+|+.++++
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~--------pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s 277 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGID--------PPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGS 277 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC--------CCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC--------CCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhH
Confidence 45999999999998887542 23332 34589999999999999999999999 7899999988
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------H---HHHHHHHhhHh
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------V---HVQNSLSKAIQ 441 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~---~vqn~LLq~LE 441 (710)
..- ..|+|..+ ..+..+....+....+||||||||.+- . .+.+.||..|+
T Consensus 278 ~L~-----------sk~vGese-----k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 341 (467)
T 4b4t_H 278 ELV-----------QKYVGEGA-----RMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLD 341 (467)
T ss_dssp GGC-----------CCSSSHHH-----HHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHH
T ss_pred Hhh-----------cccCCHHH-----HHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhh
Confidence 521 13344322 223345555555666999999999763 1 24555666665
Q ss_pred CCcccCCCCeEeecCceEEEEccCC
Q 005186 442 TGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 442 ~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
... .-.+++||+|||.
T Consensus 342 g~~---------~~~~ViVIaATNr 357 (467)
T 4b4t_H 342 GFD---------PRGNIKVMFATNR 357 (467)
T ss_dssp SSC---------CTTTEEEEEECSC
T ss_pred ccC---------CCCcEEEEeCCCC
Confidence 321 1246889999995
No 42
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.33 E-value=1.7e-11 Score=126.74 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=89.1
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|+|++++++.|...+.........-.....++...++|+||+|||||++|++||+.+ +.+++.++++....
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~---- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVK---- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHH----
Confidence 45999999999998888654211000000000133479999999999999999999988 67899988875211
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----------CHHHHHHHHhhHhCCcccCCCCeE
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-----------~~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
.+.|... .....+.........+||||||||.+ +...+..|+++++...-....
T Consensus 90 -------~~~~~~~-----~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--- 154 (285)
T 3h4m_A 90 -------KFIGEGA-----SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR--- 154 (285)
T ss_dssp -------CSTTHHH-----HHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS---
T ss_pred -------hccchHH-----HHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC---
Confidence 1222211 11233444455556689999999987 667788888877642211111
Q ss_pred eecCceEEEEccCC
Q 005186 453 VSVSNAIFVTASSF 466 (710)
Q Consensus 453 vd~~n~I~IlTSN~ 466 (710)
.+++||+|||.
T Consensus 155 ---~~~~vI~ttn~ 165 (285)
T 3h4m_A 155 ---GDVKIIGATNR 165 (285)
T ss_dssp ---SSEEEEEECSC
T ss_pred ---CCEEEEEeCCC
Confidence 36889999984
No 43
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.33 E-value=1.9e-11 Score=127.44 Aligned_cols=118 Identities=22% Similarity=0.378 Sum_probs=82.1
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCC--cceEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK--ENFICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~--~~fI~iD~s~~~~e~ 381 (710)
+.++||+++++.+...+.. . +. .+++|+||+|+|||++|+++|+.+.+.. .+++.++++...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~-------~-----~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER-------K-----NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG-- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT-------T-----CC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC--
T ss_pred HHHhCCHHHHHHHHHHHhC-------C-----CC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC--
Confidence 3489999988877666532 1 11 2499999999999999999999986543 3578888774211
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHH-----hCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecC
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELL-----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 456 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~-----~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~ 456 (710)
.+. ....+..... ..++.||||||+|.++...++.|+++|++.. .
T Consensus 82 -------------~~~------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-----------~ 131 (319)
T 2chq_A 82 -------------IDV------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-----------K 131 (319)
T ss_dssp -------------TTT------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSS-----------S
T ss_pred -------------hHH------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcC-----------C
Confidence 000 0011222221 2346899999999999999999999998621 3
Q ss_pred ceEEEEccCC
Q 005186 457 NAIFVTASSF 466 (710)
Q Consensus 457 n~I~IlTSN~ 466 (710)
+++||+++|.
T Consensus 132 ~~~~i~~~~~ 141 (319)
T 2chq_A 132 SCRFILSCNY 141 (319)
T ss_dssp SEEEEEEESC
T ss_pred CCeEEEEeCC
Confidence 6778888873
No 44
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.32 E-value=5.1e-11 Score=132.25 Aligned_cols=127 Identities=18% Similarity=0.177 Sum_probs=89.5
Q ss_pred CcccccHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~--------r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+.|.|.++++..|.++|... +.|. +++-.+||+||||||||++|++||..+ +.+|+.++++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~--------~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s 249 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGI--------KPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPAS 249 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC--------CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC--------CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehh
Confidence 45899999999998888653 1233 244589999999999999999999999 7899999998
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------H---HHHHHHHhhHh
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------V---HVQNSLSKAIQ 441 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~---~vqn~LLq~LE 441 (710)
..- ..|+|... .....+....+....+||||||||.+- . .+.+.||..|+
T Consensus 250 ~l~-----------sk~~Gese-----~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 313 (437)
T 4b4t_L 250 GIV-----------DKYIGESA-----RIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMD 313 (437)
T ss_dssp GTC-----------CSSSSHHH-----HHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHH
T ss_pred hhc-----------cccchHHH-----HHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhh
Confidence 521 12333221 223445555556667999999999752 1 34566777776
Q ss_pred CCcccCCCCeEeecCceEEEEccCC
Q 005186 442 TGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 442 ~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.-. + ..+++||+|||.
T Consensus 314 g~~---~------~~~vivI~ATNr 329 (437)
T 4b4t_L 314 GFD---N------LGQTKIIMATNR 329 (437)
T ss_dssp SSS---C------TTSSEEEEEESS
T ss_pred ccc---C------CCCeEEEEecCC
Confidence 321 1 246889999995
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.32 E-value=3.9e-12 Score=131.34 Aligned_cols=134 Identities=15% Similarity=0.107 Sum_probs=85.4
Q ss_pred HHhcCcccccHHHHHHHHHH----HHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 300 RALTEKIDWQDEAISVISQT----IAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 300 k~L~~~ViGQdeAi~~I~~a----I~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+...++|++.++..+... +...+... . ++...+||+||+|||||++|++||+.+ +.+|+.++++
T Consensus 29 ~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~-~------~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~ 98 (272)
T 1d2n_A 29 SYIMNGIIKWGDPVTRVLDDGELLVQQTKNSD-R------TPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSP 98 (272)
T ss_dssp TTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCS-S------CSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECG
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHhccC-C------CCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCH
Confidence 34556789999988877764 22222110 1 245699999999999999999999987 6789998887
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC----------CHHHHHHHHhhHhCCcc
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA----------DVHVQNSLSKAIQTGKL 445 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa----------~~~vqn~LLq~LE~G~l 445 (710)
. .++|+.... .......+.+.....+.+||||||||.+ ...+++.|...++...
T Consensus 99 ~--------------~~~g~~~~~-~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~- 162 (272)
T 1d2n_A 99 D--------------KMIGFSETA-KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP- 162 (272)
T ss_dssp G--------------GCTTCCHHH-HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC-
T ss_pred H--------------HhcCCchHH-HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc-
Confidence 3 233332210 0011122333334466799999999987 4556666666554321
Q ss_pred cCCCCeEeecCceEEEEccCC
Q 005186 446 PDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 446 ~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
. . -.+++||+|||.
T Consensus 163 -~-~-----~~~~~ii~ttn~ 176 (272)
T 1d2n_A 163 -P-Q-----GRKLLIIGTTSR 176 (272)
T ss_dssp -S-T-----TCEEEEEEEESC
T ss_pred -C-C-----CCCEEEEEecCC
Confidence 1 1 135778898884
No 46
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=4.2e-12 Score=136.21 Aligned_cols=139 Identities=15% Similarity=0.108 Sum_probs=87.7
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC--------CcceEEecC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG--------KENFICADL 374 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs--------~~~fI~iD~ 374 (710)
-+.++|+++.++.+...+..+..+ .....++|+||+|+|||++|+++++.+... ..+++.++|
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 478999999999999998877553 123489999999999999999999987433 567888888
Q ss_pred CCCCCCCCCCCCcc---cccccccccccccc---chhhHHHHHHHhCCCeEEEEeccccCCHH-HHHH-HHhhHhCCccc
Q 005186 375 CPQDGEMNNPPKFY---HQVVGGDSVQFRGK---TLADYVAWELLKKPLSVVYLENVDKADVH-VQNS-LSKAIQTGKLP 446 (710)
Q Consensus 375 s~~~~e~~~~~sl~---~~~~~G~~~~f~G~---t~~~~L~~al~~~p~sVI~LDEIDKa~~~-vqn~-LLq~LE~G~l~ 446 (710)
..... ....+. ...+.|....+.|. .....+.+.+...+. ||||||||.+... .++. |..+++..
T Consensus 90 ~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~--- 162 (384)
T 2qby_B 90 REVGG---TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSD--- 162 (384)
T ss_dssp HHHCS---CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTSS---
T ss_pred ccCCC---CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeHHHHhcCC---
Confidence 74210 000000 01111222222222 122344455544433 9999999998654 2444 44444322
Q ss_pred CCCCeEeecCceEEEEccCC
Q 005186 447 DSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 447 d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.+++||+|||.
T Consensus 163 ---------~~~~iI~~t~~ 173 (384)
T 2qby_B 163 ---------ANISVIMISND 173 (384)
T ss_dssp ---------SCEEEEEECSS
T ss_pred ---------cceEEEEEECC
Confidence 46789998884
No 47
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=2.8e-13 Score=156.10 Aligned_cols=156 Identities=12% Similarity=0.075 Sum_probs=96.3
Q ss_pred hHhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCC-CCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 292 LSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDH-HGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 292 ~~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~-~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
...+..|.+.|...|+||++++.+|..++.. |..+. .....+.+.++||+||||||||.+|++||+.+. ..+.
T Consensus 283 ~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~---g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~---r~~~ 356 (595)
T 3f9v_A 283 PWIRDRIISSIAPSIYGHWELKEALALALFG---GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP---RAVY 356 (595)
T ss_dssp TTGGGTHHHHTSSTTSCCHHHHHHHTTTTTC---CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS---CEEC
T ss_pred cHHHHHHHHhhcchhcChHHHHHHHHHHHhC---CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC---Ccee
Confidence 3456778889999999999988776544321 11000 001113456999999999999999999998772 2222
Q ss_pred EecCCCCCCCCCCCCCcccccccccccc--ccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccC-
Q 005186 371 CADLCPQDGEMNNPPKFYHQVVGGDSVQ--FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD- 447 (710)
Q Consensus 371 ~iD~s~~~~e~~~~~sl~~~~~~G~~~~--f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d- 447 (710)
..+... . ..++.+.... +.|... .-.+++..+..+|+|||||+++++.+|+.|+++||+|.++.
T Consensus 357 ~~~~~~------~-----~~~l~~~~~~~~~~g~~~--~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~ 423 (595)
T 3f9v_A 357 TTGKGS------T-----AAGLTAAVVREKGTGEYY--LEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIA 423 (595)
T ss_dssp CCTTCS------T-----TTTSEEECSSGGGTSSCS--EEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEE
T ss_pred cCCCcc------c-----cccccceeeecccccccc--ccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEe
Confidence 211110 0 0111111100 111100 00112223356899999999999999999999999999863
Q ss_pred CCCeEeec-CceEEEEccCC
Q 005186 448 SYGREVSV-SNAIFVTASSF 466 (710)
Q Consensus 448 ~~Gr~vd~-~n~I~IlTSN~ 466 (710)
..|....+ .+++||+|+|.
T Consensus 424 ~~g~~~~~~~~~~vIaatNp 443 (595)
T 3f9v_A 424 KAGIVAKLNARAAVIAAGNP 443 (595)
T ss_dssp SSSSEEEECCCCEEEEEECC
T ss_pred cCCcEEEecCceEEEEEcCC
Confidence 33444444 46889999996
No 48
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.4e-11 Score=131.52 Aligned_cols=139 Identities=12% Similarity=0.083 Sum_probs=86.8
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC-------CcceEEecCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLC 375 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs-------~~~fI~iD~s 375 (710)
.+.+.|.++-+..|...|..+..+. ....++|+||||||||.+++++++.+... ...++.+||.
T Consensus 19 ~~~L~~Re~E~~~i~~~L~~~i~~~---------~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~ 89 (318)
T 3te6_A 19 RELLKSQVEDFTRIFLPIYDSLMSS---------QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL 89 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT---------CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence 3448899999999999998876531 33589999999999999999999988522 2357889987
Q ss_pred CCCCCCCCCCCcc---ccccccccccccccchhhHHHHHHH-----hCCCeEEEEeccccCCHHHHHHHHhhHhCCcccC
Q 005186 376 PQDGEMNNPPKFY---HQVVGGDSVQFRGKTLADYVAWELL-----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 447 (710)
Q Consensus 376 ~~~~e~~~~~sl~---~~~~~G~~~~f~G~t~~~~L~~al~-----~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d 447 (710)
... ....++ ...+.|.... .+. ....+...+. .....||||||||.+. -|+.|+.+++-...
T Consensus 90 ~~~----t~~~~~~~I~~~L~g~~~~-~~~-~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~-- 159 (318)
T 3te6_A 90 ELA----GMDALYEKIWFAISKENLC-GDI-SLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISS-- 159 (318)
T ss_dssp CCC------HHHHHHHHHHHSCCC---CCC-CHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHC--
T ss_pred ccC----CHHHHHHHHHHHhcCCCCC-chH-HHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccc--
Confidence 522 111111 1112222111 011 1122322222 3445799999999997 57777777752111
Q ss_pred CCCeEeecCceEEEEccCC
Q 005186 448 SYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 448 ~~Gr~vd~~n~I~IlTSN~ 466 (710)
.-.+.+||+++|.
T Consensus 160 ------~~s~~~vI~i~n~ 172 (318)
T 3te6_A 160 ------KNSKLSIICVGGH 172 (318)
T ss_dssp ------SSCCEEEEEECCS
T ss_pred ------cCCcEEEEEEecC
Confidence 1245788998884
No 49
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.30 E-value=3.9e-11 Score=132.92 Aligned_cols=127 Identities=17% Similarity=0.138 Sum_probs=89.3
Q ss_pred CcccccHHHHHHHHHHHHHHh--------cCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQRR--------TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r--------~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+.|.|.+++++.|.+.|.... .|.. ++-.+||+||||||||++|++||..+ +.+|+.++++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~--------~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~ 240 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGID--------PPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGS 240 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC--------CCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC--------CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecc
Confidence 459999999999988886431 2332 33479999999999999999999999 7899999998
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC-----------C---HHHHHHHHhhHh
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------D---VHVQNSLSKAIQ 441 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa-----------~---~~vqn~LLq~LE 441 (710)
..-. .|+|..+ ..+..++...+....+||||||||.+ + ..+.+.||..|+
T Consensus 241 ~l~~-----------~~~Ge~e-----~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ld 304 (428)
T 4b4t_K 241 EFVH-----------KYLGEGP-----RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMD 304 (428)
T ss_dssp GTCC-----------SSCSHHH-----HHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHH
T ss_pred hhhc-----------cccchhH-----HHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhh
Confidence 5211 2334322 22344555555666699999999953 1 235667777776
Q ss_pred CCcccCCCCeEeecCceEEEEccCC
Q 005186 442 TGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 442 ~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.-. ...+++||+|||.
T Consensus 305 g~~---------~~~~v~vI~aTN~ 320 (428)
T 4b4t_K 305 GFD---------QSTNVKVIMATNR 320 (428)
T ss_dssp HSC---------SSCSEEEEEEESC
T ss_pred CCC---------CCCCEEEEEecCC
Confidence 321 1246889999995
No 50
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=1.8e-11 Score=129.75 Aligned_cols=132 Identities=19% Similarity=0.253 Sum_probs=79.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC---CCcceEEecCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG---GKENFICADLCPQDGE 380 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g---s~~~fI~iD~s~~~~e 380 (710)
+.++||+++++.|..++... ...+++|+||+|+|||++|++||+.+.+ ....++.++++....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~- 102 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG- 102 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC-
T ss_pred HHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc-
Confidence 56999999988877665311 1124999999999999999999998742 234567777664110
Q ss_pred CCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEE
Q 005186 381 MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIF 460 (710)
Q Consensus 381 ~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~ 460 (710)
. ..+......+........ ............+.||||||++.+++..++.|+++|++.. .+++|
T Consensus 103 ---~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-----------~~~~~ 166 (353)
T 1sxj_D 103 ---I-SIVREKVKNFARLTVSKP-SKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-----------GVTRF 166 (353)
T ss_dssp ---H-HHHTTHHHHHHHSCCCCC-CTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-----------TTEEE
T ss_pred ---h-HHHHHHHHHHhhhccccc-chhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-----------CCceE
Confidence 0 000000000000000000 0000000011345799999999999999999999999753 25667
Q ss_pred EEccC
Q 005186 461 VTASS 465 (710)
Q Consensus 461 IlTSN 465 (710)
|+++|
T Consensus 167 il~~~ 171 (353)
T 1sxj_D 167 CLICN 171 (353)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 88776
No 51
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.28 E-value=1.2e-10 Score=119.15 Aligned_cols=134 Identities=14% Similarity=0.100 Sum_probs=85.0
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|+|++++++.+...+.......... ....+.+..++|+||+|+|||++|++||..+ ..+++.++++....
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~---- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQ-KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVE---- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTT----
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHH-HcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHH----
Confidence 469999999999888776533210000 0001233469999999999999999999988 56899999885311
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH--------------HHHHHHHhhHhCCcccCCC
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV--------------HVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~--------------~vqn~LLq~LE~G~l~d~~ 449 (710)
.+.|... .....+.+.......+|+||||||.+.. ..++.|+..|+.-. .
T Consensus 84 -------~~~~~~~-----~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~-- 147 (257)
T 1lv7_A 84 -------MFVGVGA-----SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--G-- 147 (257)
T ss_dssp -------SCCCCCH-----HHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC--S--
T ss_pred -------HhhhhhH-----HHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc--c--
Confidence 1222211 1122333444444568999999986542 45667777776321 1
Q ss_pred CeEeecCceEEEEccCC
Q 005186 450 GREVSVSNAIFVTASSF 466 (710)
Q Consensus 450 Gr~vd~~n~I~IlTSN~ 466 (710)
-.+++||+|||.
T Consensus 148 -----~~~~~vI~~tn~ 159 (257)
T 1lv7_A 148 -----NEGIIVIAATNR 159 (257)
T ss_dssp -----SSCEEEEEEESC
T ss_pred -----CCCEEEEEeeCC
Confidence 135788898884
No 52
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.28 E-value=8.1e-11 Score=126.05 Aligned_cols=143 Identities=8% Similarity=0.024 Sum_probs=93.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCe--EEEEecCCCCchhHHHHHHHHHHcCC-CcceEEecCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDI--WFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLCPQDGE 380 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~--~lLf~GP~GvGKT~LAraLAe~L~gs-~~~fI~iD~s~~~~e 380 (710)
+.++|+++.+..|...+.....+. ... .++|+||+|+|||++++++++.+... ...++.++|.....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~---------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~- 86 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNP---------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN- 86 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHST---------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS-
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC-
Confidence 569999999999999998775531 123 79999999999999999999998655 46788999875211
Q ss_pred CCCCCCcccc--ccccccccccc---cchhhHHHHHHHh-CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 381 MNNPPKFYHQ--VVGGDSVQFRG---KTLADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 381 ~~~~~sl~~~--~~~G~~~~f~G---~t~~~~L~~al~~-~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
...+... ..+|......+ ......+...+.. ....||||||++.++..++..|++++++..-..
T Consensus 87 ---~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~------- 156 (389)
T 1fnn_A 87 ---FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLG------- 156 (389)
T ss_dssp ---HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHS-------
T ss_pred ---HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCC-------
Confidence 0011100 01111111111 1122344444444 335799999999999999999999997532000
Q ss_pred cCceEEEEccCC
Q 005186 455 VSNAIFVTASSF 466 (710)
Q Consensus 455 ~~n~I~IlTSN~ 466 (710)
-.++.||+++|.
T Consensus 157 ~~~~~iI~~~~~ 168 (389)
T 1fnn_A 157 AFRIALVIVGHN 168 (389)
T ss_dssp SCCEEEEEEESS
T ss_pred cCCEEEEEEECC
Confidence 025668888873
No 53
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.28 E-value=2.7e-10 Score=121.59 Aligned_cols=135 Identities=15% Similarity=0.115 Sum_probs=81.2
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCC--CC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG--EM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~--e~ 381 (710)
+.++||+++++.+..++...+ ....++|+||+|+|||++|+++|+.+.... ......|..... .+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR------------IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREI 82 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC------------CCSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSCSSCCSSSHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCCCcccHHHHHH
Confidence 459999999999988886421 234799999999999999999999885321 111111111000 00
Q ss_pred CCCCCccccccccccc-cccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecC
Q 005186 382 NNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 456 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~-~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~ 456 (710)
.... .+.++..+. ...+......+.+.+... .+.||||||+|.++...++.|++++++. -.
T Consensus 83 ~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~-----------~~ 148 (373)
T 1jr3_A 83 EQGR---FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PE 148 (373)
T ss_dssp HTSC---CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC-----------CS
T ss_pred hccC---CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC-----------CC
Confidence 0000 000110000 001111123344444432 3579999999999999999999999862 13
Q ss_pred ceEEEEccC
Q 005186 457 NAIFVTASS 465 (710)
Q Consensus 457 n~I~IlTSN 465 (710)
+++||+++|
T Consensus 149 ~~~~Il~~~ 157 (373)
T 1jr3_A 149 HVKFLLATT 157 (373)
T ss_dssp SEEEEEEES
T ss_pred ceEEEEEeC
Confidence 577888877
No 54
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=1e-10 Score=121.98 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=81.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCC--cceEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK--ENFICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~--~~fI~iD~s~~~~e~ 381 (710)
+.++||+++++.+...+... +.. .++|+||+|+|||++|+++++.+.+.. ..++.++++...
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--- 84 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------------NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR--- 84 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------------CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC---
T ss_pred HHHHCCHHHHHHHHHHHHcC------------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc---
Confidence 45899999999888776421 122 399999999999999999999875422 346667665310
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHH-------hCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELL-------KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~-------~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
+ ......+.+.+. ...+.||||||+|+++...++.|++++++..
T Consensus 85 ------------~-------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~---------- 135 (323)
T 1sxj_B 85 ------------G-------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYS---------- 135 (323)
T ss_dssp ------------S-------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTT----------
T ss_pred ------------C-------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccC----------
Confidence 0 001111222222 2236899999999999999999999999642
Q ss_pred cCceEEEEccC
Q 005186 455 VSNAIFVTASS 465 (710)
Q Consensus 455 ~~n~I~IlTSN 465 (710)
.+++||++||
T Consensus 136 -~~~~~il~~~ 145 (323)
T 1sxj_B 136 -NSTRFAFACN 145 (323)
T ss_dssp -TTEEEEEEES
T ss_pred -CCceEEEEeC
Confidence 3577888887
No 55
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.25 E-value=4e-10 Score=110.80 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=79.5
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCC--CC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG--EM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~--e~ 381 (710)
+.++|++++++.|...+...+ ....++|+||+|+|||++|+++++.+.... .++...|..... .+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~------------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 89 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR------------IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREI 89 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC------------CCSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCSSCCSCSHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHH
Confidence 458999999999888876421 234899999999999999999999874321 111111110000 00
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHHh-------CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK-------KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-------~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
... . ...+++.... +....+.+.+.+.. ....||||||++.+++..++.|++.+++.
T Consensus 90 ~~~-~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~----------- 153 (250)
T 1njg_A 90 EQG-R--FVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP----------- 153 (250)
T ss_dssp HTT-C--CSSEEEEETT--CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-----------
T ss_pred hcc-C--CcceEEecCc--ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-----------
Confidence 000 0 0011111100 00111223333332 23579999999999999999999999853
Q ss_pred cCceEEEEccCC
Q 005186 455 VSNAIFVTASSF 466 (710)
Q Consensus 455 ~~n~I~IlTSN~ 466 (710)
-.++++|+|||.
T Consensus 154 ~~~~~~i~~t~~ 165 (250)
T 1njg_A 154 PEHVKFLLATTD 165 (250)
T ss_dssp CTTEEEEEEESC
T ss_pred CCceEEEEEeCC
Confidence 135778888873
No 56
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.24 E-value=2e-10 Score=128.08 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=53.8
Q ss_pred hcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 302 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 302 L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
+.+.|+||+++++.+...+...+.+.. +...+||+||||||||++|++||+.+ +...+|+.++++.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~--------~~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~~ 100 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKM--------AGRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGSE 100 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCC--------TTCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGGG
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCC--------CCCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHHH
Confidence 356799999999998888877765432 33479999999999999999999998 3347899998874
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.24 E-value=2.5e-11 Score=129.60 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=87.4
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC------CCcceEEecCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG------GKENFICADLCP 376 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g------s~~~fI~iD~s~ 376 (710)
.+.++|+++.+..+...+.....+ .....++|+||+|+|||++|+++++.+.. ....++.++|..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRG---------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSS---------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 367999999999888877544221 12348999999999999999999998743 257788999875
Q ss_pred CCCCCCCCCCccc--ccccccccccccc---chhhHHHHHHHhC-CCeEEEEeccccCCHH--HHHHHHhhHhCCcccCC
Q 005186 377 QDGEMNNPPKFYH--QVVGGDSVQFRGK---TLADYVAWELLKK-PLSVVYLENVDKADVH--VQNSLSKAIQTGKLPDS 448 (710)
Q Consensus 377 ~~~e~~~~~sl~~--~~~~G~~~~f~G~---t~~~~L~~al~~~-p~sVI~LDEIDKa~~~--vqn~LLq~LE~G~l~d~ 448 (710)
... ...+.. -...|....+.|. .....+...+... ...|||||||+.+... .+..|.++++......
T Consensus 89 ~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~- 163 (387)
T 2v1u_A 89 RET----PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG- 163 (387)
T ss_dssp SCS----HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC--
T ss_pred CCC----HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC-
Confidence 211 000000 0001111111221 1223444455433 2569999999999876 7777777776321110
Q ss_pred CCeEeecCceEEEEccCC
Q 005186 449 YGREVSVSNAIFVTASSF 466 (710)
Q Consensus 449 ~Gr~vd~~n~I~IlTSN~ 466 (710)
+ -.+++||++||.
T Consensus 164 ----~-~~~~~~I~~t~~ 176 (387)
T 2v1u_A 164 ----D-RVWVSLVGITNS 176 (387)
T ss_dssp ---------CEEEEECSC
T ss_pred ----C-CceEEEEEEECC
Confidence 0 135678888884
No 58
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.20 E-value=3.4e-10 Score=120.96 Aligned_cols=133 Identities=13% Similarity=0.131 Sum_probs=81.1
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCC------CC
Q 005186 306 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ------DG 379 (710)
Q Consensus 306 ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~------~~ 379 (710)
+.||+++++.+..++... +....+||+||+|+|||++|+++|+.+......- ..-|+.+ ..
T Consensus 4 ~pw~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~~~ 70 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKSCGHCRGCQLMQA 70 (334)
T ss_dssp CGGGHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBCCSCSHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhc
Confidence 679999998888877532 2345899999999999999999999996432110 0001100 00
Q ss_pred CCCCCCCcccccccccc-ccccccchhhHHHHHHHhC----CCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEee
Q 005186 380 EMNNPPKFYHQVVGGDS-VQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 454 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~-~~f~G~t~~~~L~~al~~~----p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd 454 (710)
.... .+. .+.+.. ....+......+.+.+... .+.||+|||+|+++...+|.|++.||+..
T Consensus 71 -~~~~-d~~--~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~---------- 136 (334)
T 1a5t_A 71 -GTHP-DYY--TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPP---------- 136 (334)
T ss_dssp -TCCT-TEE--EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCC----------
T ss_pred -CCCC-CEE--EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCC----------
Confidence 0000 000 000000 0011111122344444433 36899999999999999999999999742
Q ss_pred cCceEEEEccCC
Q 005186 455 VSNAIFVTASSF 466 (710)
Q Consensus 455 ~~n~I~IlTSN~ 466 (710)
.+++||++||.
T Consensus 137 -~~~~~Il~t~~ 147 (334)
T 1a5t_A 137 -AETWFFLATRE 147 (334)
T ss_dssp -TTEEEEEEESC
T ss_pred -CCeEEEEEeCC
Confidence 46889998873
No 59
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.20 E-value=5.3e-10 Score=125.54 Aligned_cols=134 Identities=14% Similarity=0.113 Sum_probs=87.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|+|+++++..+...+...+...... ....+.+..++|+||+|+|||++|++||..+ +.+|+.++++....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~-~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~---- 87 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFN-RIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVE---- 87 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHH-TTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHh-hcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHH----
Confidence 459999999999988876543200000 0001233469999999999999999999988 68899999885211
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH--------------HHHHHHHhhHhCCcccCCC
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV--------------HVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~--------------~vqn~LLq~LE~G~l~d~~ 449 (710)
.++|.. ......+.........+||||||||.+.. .+++.|+..|+.-. .
T Consensus 88 -------~~~g~~-----~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~--~-- 151 (476)
T 2ce7_A 88 -------LFVGVG-----AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD--S-- 151 (476)
T ss_dssp -------CCTTHH-----HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC--G--
T ss_pred -------HHhccc-----HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC--C--
Confidence 123321 11112233333444569999999998743 46788888887311 0
Q ss_pred CeEeecCceEEEEccCC
Q 005186 450 GREVSVSNAIFVTASSF 466 (710)
Q Consensus 450 Gr~vd~~n~I~IlTSN~ 466 (710)
-.+++||+|||.
T Consensus 152 -----~~~viVIaaTn~ 163 (476)
T 2ce7_A 152 -----KEGIIVMAATNR 163 (476)
T ss_dssp -----GGTEEEEEEESC
T ss_pred -----CCCEEEEEecCC
Confidence 136889999995
No 60
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.19 E-value=7.7e-12 Score=128.39 Aligned_cols=128 Identities=15% Similarity=0.123 Sum_probs=80.3
Q ss_pred CcccccHHHHHHHHHHHHHHhc-------CCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRT-------GHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~-------g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
+.++|++++++.|...+..... +. +....++|+||+|||||++|++||+.+ ..+++.++++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~ 79 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGA--------KIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSS 79 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSC--------CCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCT
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCC--------CCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHH
Confidence 4589999999888877764321 11 123358999999999999999999988 56788888875
Q ss_pred CCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHH---------------HHHHHHhhHh
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVH---------------VQNSLSKAIQ 441 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~---------------vqn~LLq~LE 441 (710)
... .+.|.... .. ..+.+.......+||||||||.+... +++.|+..|+
T Consensus 80 ~~~-----------~~~~~~~~----~~-~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (268)
T 2r62_A 80 FIE-----------MFVGLGAS----RV-RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMD 143 (268)
T ss_dssp TTT-----------SCSSSCSS----SS-STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTT
T ss_pred HHH-----------hhcchHHH----HH-HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhh
Confidence 221 12222211 11 12233334445689999999998653 3445555554
Q ss_pred CCcccCCCCeEeecCceEEEEccCC
Q 005186 442 TGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 442 ~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.-. -.-.+++||+|||.
T Consensus 144 ~~~--------~~~~~v~vi~ttn~ 160 (268)
T 2r62_A 144 GFG--------SENAPVIVLAATNR 160 (268)
T ss_dssp CSS--------CSCSCCEEEECBSC
T ss_pred Ccc--------cCCCCEEEEEecCC
Confidence 211 01134678888874
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.18 E-value=1.1e-10 Score=131.71 Aligned_cols=135 Identities=15% Similarity=0.123 Sum_probs=90.1
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|+|++.++..|...+.........-.....+++..+||+||+|||||++|++||..+ +.+|+.++|+...
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~----- 275 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM----- 275 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhh-----
Confidence 46999999999998888754110000000000234589999999999999999999987 7899999998521
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HHHHHHHHhhHhCCcccCCCCeE
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
..|+|...+ .+.+.+..+ .....+||||||||.+. ..+++.|++.|+.-..
T Consensus 276 ------~~~~g~~~~----~~~~~f~~A-~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~------- 337 (489)
T 3hu3_A 276 ------SKLAGESES----NLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ------- 337 (489)
T ss_dssp ------TSCTTHHHH----HHHHHHHHH-HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT-------
T ss_pred ------hhhcchhHH----HHHHHHHHH-HhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc-------
Confidence 123333221 112233333 34445899999997553 4789999999984321
Q ss_pred eecCceEEEEccCC
Q 005186 453 VSVSNAIFVTASSF 466 (710)
Q Consensus 453 vd~~n~I~IlTSN~ 466 (710)
-.+++||+|||.
T Consensus 338 --~~~v~vIaaTn~ 349 (489)
T 3hu3_A 338 --RAHVIVMAATNR 349 (489)
T ss_dssp --TSCEEEEEEESC
T ss_pred --CCceEEEEecCC
Confidence 136889999994
No 62
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=3.5e-10 Score=120.69 Aligned_cols=117 Identities=21% Similarity=0.342 Sum_probs=80.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc--ceEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE--NFICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~--~fI~iD~s~~~~e~ 381 (710)
..++||+++++.|...+... +.+ +++|+||+|+|||++|++||+.+++... .++.++.+..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------------~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~---- 87 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------------KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD---- 87 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------------CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC----
T ss_pred HHhcCcHHHHHHHHHHHhcC------------CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc----
Confidence 34889999999888777531 112 4999999999999999999999876432 3455554420
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHH--h----CCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeec
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELL--K----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSV 455 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~--~----~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~ 455 (710)
+|......+.+.+. . ..+.|++|||+|.+....++.|+++||+..
T Consensus 88 ------------------~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~----------- 138 (340)
T 1sxj_C 88 ------------------RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYT----------- 138 (340)
T ss_dssp ------------------CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-----------
T ss_pred ------------------ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCC-----------
Confidence 01100111111122 1 236899999999999999999999999642
Q ss_pred CceEEEEccCC
Q 005186 456 SNAIFVTASSF 466 (710)
Q Consensus 456 ~n~I~IlTSN~ 466 (710)
.+++||+++|.
T Consensus 139 ~~~~~il~~n~ 149 (340)
T 1sxj_C 139 KNTRFCVLANY 149 (340)
T ss_dssp TTEEEEEEESC
T ss_pred CCeEEEEEecC
Confidence 35678888874
No 63
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=6.9e-10 Score=118.10 Aligned_cols=138 Identities=12% Similarity=0.162 Sum_probs=74.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCC---C
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG---E 380 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~---e 380 (710)
+.++||+++++.+..++. ... +.+. ++|+||+|+|||+++++||..+++....-+.++...... .
T Consensus 14 ~~~vg~~~~~~~l~~~~~------~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSD------QPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp GGCCSCHHHHHHHHTTTT------CTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred HHhcCCHHHHHHHHHHHh------hCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 458899998877665541 111 2233 999999999999999999997765433222222110000 0
Q ss_pred -----CCCCCCccccccccccccccccchhhHHHHHHH--------------hCCCeEEEEeccccCCHHHHHHHHhhHh
Q 005186 381 -----MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL--------------KKPLSVVYLENVDKADVHVQNSLSKAIQ 441 (710)
Q Consensus 381 -----~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~--------------~~p~sVI~LDEIDKa~~~vqn~LLq~LE 441 (710)
+......+ .+.+...+.........+.+.+. ...+.||+|||++.+++..++.|++.|+
T Consensus 82 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 82 KLELNVVSSPYHL--EITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp ----CCEECSSEE--EECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred cceeeeecccceE--EecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 00000000 00000000000000111222221 1245699999999999999999999999
Q ss_pred CCcccCCCCeEeecCceEEEEccCC
Q 005186 442 TGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 442 ~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
+-. .+++||++||.
T Consensus 160 ~~~-----------~~~~~Il~t~~ 173 (354)
T 1sxj_E 160 KYS-----------KNIRLIMVCDS 173 (354)
T ss_dssp HST-----------TTEEEEEEESC
T ss_pred hhc-----------CCCEEEEEeCC
Confidence 631 34678888873
No 64
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.14 E-value=5.6e-10 Score=118.01 Aligned_cols=87 Identities=11% Similarity=-0.046 Sum_probs=58.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
.+++|+||+|+|||++|++|++.+...+.+++.+++..... .+.+... ......+.+.+.. ..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~----~~~~~~~~~~~~~--~~ 100 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ-----------AMVEHLK----KGTINEFRNMYKS--VD 100 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH-----------HHHHHHH----HTCHHHHHHHHHT--CS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-----------HHHHHHH----cCcHHHHHHHhcC--CC
Confidence 47999999999999999999998865567788888764100 0100000 0011223333332 57
Q ss_pred EEEEeccccCCH--HHHHHHHhhHhC
Q 005186 419 VVYLENVDKADV--HVQNSLSKAIQT 442 (710)
Q Consensus 419 VI~LDEIDKa~~--~vqn~LLq~LE~ 442 (710)
|||||||+.+.. ..|..|+.+++.
T Consensus 101 vL~iDEi~~l~~~~~~~~~l~~~l~~ 126 (324)
T 1l8q_A 101 LLLLDDVQFLSGKERTQIEFFHIFNT 126 (324)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHH
T ss_pred EEEEcCcccccCChHHHHHHHHHHHH
Confidence 999999999876 788888888763
No 65
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=1.4e-09 Score=123.02 Aligned_cols=129 Identities=11% Similarity=0.063 Sum_probs=78.3
Q ss_pred CcccccHHHHHHHHHHHHHHh----cCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRR----TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG 379 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r----~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~ 379 (710)
+.|+|++++++.|...+..+. .+...++.....+...++|+||+|||||++|++||+.+ +.+++.++++....
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRS 115 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcch
Confidence 459999999999999987653 22222211001133589999999999999999999998 67899999985211
Q ss_pred CCCCCCCccccccccccccccccchhhHHHHH----HHhCCCeEEEEeccccCCHHH---HHHHHhhHhCC
Q 005186 380 EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWE----LLKKPLSVVYLENVDKADVHV---QNSLSKAIQTG 443 (710)
Q Consensus 380 e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~a----l~~~p~sVI~LDEIDKa~~~v---qn~LLq~LE~G 443 (710)
. .+.......... .....+.+..+ .......||||||||.+.... .+.|+++++++
T Consensus 116 ----~-~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~ 178 (516)
T 1sxj_A 116 ----K-TLLNAGVKNALD---NMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT 178 (516)
T ss_dssp ----H-HHHHHTGGGGTT---BCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC
T ss_pred ----H-HHHHHHHHHHhc---cccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc
Confidence 0 000000000000 00000001000 112456899999999997644 48888888763
No 66
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.09 E-value=3.9e-10 Score=112.08 Aligned_cols=78 Identities=12% Similarity=0.117 Sum_probs=56.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
.+++|+||+|+|||++|++|++.+.....+++.+++......+ . . .+ ..+ ....
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~-~--------~~-~~~--~~~~ 106 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS--------------T-A--------LL-EGL--EQFD 106 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC--------------G-G--------GG-TTG--GGSS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--------------H-H--------HH-Hhc--cCCC
Confidence 4899999999999999999999886656778888877421100 0 0 00 011 2247
Q ss_pred EEEEeccccCCHHH--HHHHHhhHhC
Q 005186 419 VVYLENVDKADVHV--QNSLSKAIQT 442 (710)
Q Consensus 419 VI~LDEIDKa~~~v--qn~LLq~LE~ 442 (710)
||||||++.+.... ++.|+++++.
T Consensus 107 vliiDe~~~~~~~~~~~~~l~~~l~~ 132 (242)
T 3bos_A 107 LICIDDVDAVAGHPLWEEAIFDLYNR 132 (242)
T ss_dssp EEEEETGGGGTTCHHHHHHHHHHHHH
T ss_pred EEEEeccccccCCHHHHHHHHHHHHH
Confidence 99999999997655 8888888864
No 67
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.09 E-value=3e-10 Score=127.18 Aligned_cols=114 Identities=17% Similarity=0.218 Sum_probs=71.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC-------CcceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs-------~~~fI~iD~s~ 376 (710)
+.|+||++.++.+...+.+ +...++||+||+|||||.+|++||..+... +.+++.+|++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred CCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc
Confidence 4599999999988877653 123478999999999999999999988542 44567777651
Q ss_pred CCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecC
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 456 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~ 456 (710)
.|.|... .....+.+.+......||||| ...++++.|+++|+.|
T Consensus 247 --------------~~~g~~e-----~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g------------- 290 (468)
T 3pxg_A 247 --------------KYRGEFE-----DRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG------------- 290 (468)
T ss_dssp --------------------C-----TTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS-------------
T ss_pred --------------cccchHH-----HHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC-------------
Confidence 1122111 112345566666677899999 6778999999999866
Q ss_pred ceEEEEccCC
Q 005186 457 NAIFVTASSF 466 (710)
Q Consensus 457 n~I~IlTSN~ 466 (710)
+.++|.+||.
T Consensus 291 ~v~vI~at~~ 300 (468)
T 3pxg_A 291 ELQCIGATTL 300 (468)
T ss_dssp SCEEEEECCT
T ss_pred CEEEEecCCH
Confidence 3558888884
No 68
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.09 E-value=9.7e-09 Score=109.67 Aligned_cols=105 Identities=15% Similarity=0.136 Sum_probs=72.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.++||+.++..+...+...+... ++...++|+||+|+|||+||++||..+ +.++........
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~--------~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~~~sg~~~------ 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRG--------EVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVL------ 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHT--------CCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTC------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEechHh------
Confidence 347899999999988887653210 123479999999999999999999988 333333222210
Q ss_pred CCCccccccccccccccccchhhHHHHHHHh-CCCeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~-~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
..+ ..+...+.. ....|+||||++.+.+.+++.|+.+++.+.
T Consensus 88 ---------------~~~----~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~ 130 (334)
T 1in4_A 88 ---------------VKQ----GDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQ 130 (334)
T ss_dssp ---------------CSH----HHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSC
T ss_pred ---------------cCH----HHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcc
Confidence 001 122222222 346799999999999999999999888653
No 69
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=1.1e-09 Score=116.30 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=78.3
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHc--C-CCcceEEecCCCCCCCCCCC
Q 005186 308 WQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY--G-GKENFICADLCPQDGEMNNP 384 (710)
Q Consensus 308 GQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~--g-s~~~fI~iD~s~~~~e~~~~ 384 (710)
||+++++.|...|... + ...+||+||+|+|||++|++||+... . ....++.++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-------- 59 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-------- 59 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------
Confidence 7899999888887532 1 34899999999999999999998631 1 123444444331
Q ss_pred CCccccccccccccccccchhhHHHHHHHhCC----CeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEE
Q 005186 385 PKFYHQVVGGDSVQFRGKTLADYVAWELLKKP----LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIF 460 (710)
Q Consensus 385 ~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p----~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~ 460 (710)
..++......+.+.+...| +.||||||+|.+....+|+|++.||+.. .+++|
T Consensus 60 -------------~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~-----------~~t~f 115 (305)
T 2gno_A 60 -------------ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPP-----------EYAVI 115 (305)
T ss_dssp -------------SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCC-----------TTEEE
T ss_pred -------------CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCC-----------CCeEE
Confidence 0112112234555555555 5799999999999999999999999752 46788
Q ss_pred EEccCC
Q 005186 461 VTASSF 466 (710)
Q Consensus 461 IlTSN~ 466 (710)
|++||.
T Consensus 116 Il~t~~ 121 (305)
T 2gno_A 116 VLNTRR 121 (305)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 988874
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.03 E-value=7.1e-10 Score=118.00 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=86.0
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC---CcceEEecCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG---KENFICADLCPQDGE 380 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs---~~~fI~iD~s~~~~e 380 (710)
+.++|+++.++.|...+.....+ .....++|+||+|+|||++++++++.+... ...++.++|.....
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~- 89 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT- 89 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS-
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC-
Confidence 56899999998888777644322 123489999999999999999999987432 45788888763110
Q ss_pred CCCCCCccc--ccccccccccccc---chhhHHHHHHHhCC-CeEEEEeccccCC----HHHHHHHHhhHhCCcccCCCC
Q 005186 381 MNNPPKFYH--QVVGGDSVQFRGK---TLADYVAWELLKKP-LSVVYLENVDKAD----VHVQNSLSKAIQTGKLPDSYG 450 (710)
Q Consensus 381 ~~~~~sl~~--~~~~G~~~~f~G~---t~~~~L~~al~~~p-~sVI~LDEIDKa~----~~vqn~LLq~LE~G~l~d~~G 450 (710)
...+.. -..+|......|. .....+.+.+.... ..||||||++.+. ..++..|++.++.. .
T Consensus 90 ---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~---~--- 160 (386)
T 2qby_A 90 ---PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV---N--- 160 (386)
T ss_dssp ---HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC---C---
T ss_pred ---HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc---C---
Confidence 000000 0001111111121 12234555555443 6799999999875 56777888887653 1
Q ss_pred eEeecCceEEEEccCC
Q 005186 451 REVSVSNAIFVTASSF 466 (710)
Q Consensus 451 r~vd~~n~I~IlTSN~ 466 (710)
-.++++|+++|.
T Consensus 161 ----~~~~~~I~~~~~ 172 (386)
T 2qby_A 161 ----KSKISFIGITND 172 (386)
T ss_dssp ----C--EEEEEEESC
T ss_pred ----CCeEEEEEEECC
Confidence 135678888873
No 71
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.03 E-value=2.3e-09 Score=119.14 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=48.2
Q ss_pred hHHhcCcc--eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q 005186 592 QDFFNQRV--KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRG 668 (710)
Q Consensus 592 ~efl~RiD--~iVvF~PLD~d~Laeiil~~L~~~~~~~~g~~i~LeId~eale~La~~~~~~~GaR~le~~IE~vl~~~ 668 (710)
+.++.|+. .++.+.|++.+++.+++.+.+... + +.++++++++|+.. + ....|.++..++.+..-+
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~-------~--~~i~~e~l~~la~~-~-~gn~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE-------H--GELPEEVLNFVAEN-V-DDNLRRLRGAIIKLLVYK 313 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHH-------T--CCCCTTHHHHHHHH-C-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHH
Confidence 44566664 578899999999988887765421 2 56899999999875 2 335588999888887544
No 72
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.02 E-value=1.7e-09 Score=122.02 Aligned_cols=132 Identities=17% Similarity=0.135 Sum_probs=82.5
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 382 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~ 382 (710)
.+.|+|+++++..+...+.......... ....+.+..++|+||+|+|||+||++||..+ ..+|+.++++....
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~-~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFH-EMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVE--- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTT-TTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTS---
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhh-hccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHH---
Confidence 3569999999999888776543210000 0001222359999999999999999999987 57899998875211
Q ss_pred CCCCccccccccccccccccchhhHHHHHHHh---CCCeEEEEeccccCCH--------------HHHHHHHhhHhCCcc
Q 005186 383 NPPKFYHQVVGGDSVQFRGKTLADYVAWELLK---KPLSVVYLENVDKADV--------------HVQNSLSKAIQTGKL 445 (710)
Q Consensus 383 ~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~---~p~sVI~LDEIDKa~~--------------~vqn~LLq~LE~G~l 445 (710)
.++|.. ...+...+.. ...+|+||||||.+.. ...+.|+..|+.+.-
T Consensus 103 --------~~~g~~--------~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 103 --------MFVGVG--------AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp --------SCTTHH--------HHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred --------hhhhhH--------HHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 112211 0122233322 2348999999997632 455667776765431
Q ss_pred cCCCCeEeecCceEEEEccCC
Q 005186 446 PDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 446 ~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
-+.+|+|+++|.
T Consensus 167 ---------~~~viviAatn~ 178 (499)
T 2dhr_A 167 ---------DTAIVVMAATNR 178 (499)
T ss_dssp ---------SCCCEEEECCSC
T ss_pred ---------CccEEEEEecCC
Confidence 135678888874
No 73
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.98 E-value=4.1e-10 Score=107.24 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=83.0
Q ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC-------CCcce
Q 005186 297 TLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG-------GKENF 369 (710)
Q Consensus 297 ~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g-------s~~~f 369 (710)
.+...-.+.++|+++++..+...+.. .....++|+||+|+|||++|+++++.+.. ...++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred HHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 33344456799999988887766632 12347899999999999999999998854 24456
Q ss_pred EEecCCCCCCCCCCCCCcccccccccccccccc--chhhHHHHHHHhC-CCeEEEEeccccCC---------HHHHHHHH
Q 005186 370 ICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGK--TLADYVAWELLKK-PLSVVYLENVDKAD---------VHVQNSLS 437 (710)
Q Consensus 370 I~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~--t~~~~L~~al~~~-p~sVI~LDEIDKa~---------~~vqn~LL 437 (710)
+.+++.... .+ ..+.|. .....+...+... ...||||||++.+. ..+++.|.
T Consensus 82 ~~~~~~~~~--------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~ 145 (187)
T 2p65_A 82 VSLDLSSLI--------------AG--AKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILK 145 (187)
T ss_dssp EEECHHHHH--------------HH--CCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHH
T ss_pred EEEeHHHhh--------------cC--CCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHH
Confidence 666554210 00 001111 1112233333333 45799999999987 67888888
Q ss_pred hhHhCCcccCCCCeEeecCceEEEEccCC
Q 005186 438 KAIQTGKLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 438 q~LE~G~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
.+++++ +++||+++|.
T Consensus 146 ~~~~~~-------------~~~ii~~~~~ 161 (187)
T 2p65_A 146 PMLARG-------------ELRCIGATTV 161 (187)
T ss_dssp HHHHTT-------------CSCEEEEECH
T ss_pred HHHhcC-------------CeeEEEecCH
Confidence 888753 3558888884
No 74
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.97 E-value=3.2e-09 Score=125.72 Aligned_cols=135 Identities=15% Similarity=0.110 Sum_probs=89.8
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|.|.++++..|.+.|.........-.+-..+++..+||+||+|||||+||++||..+ +.+|+.++++....
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~~l~s---- 276 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS---- 276 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHHHHHS----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhHHhhc----
Confidence 45899999999998888653211000001112456689999999999999999999988 78899999885211
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HHHHHHHHhhHhCCcccCCCCeE
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
.|+|..+ ..+..+.+..+++..+||||||||.+- ..+.+.|+..|+.-.
T Consensus 277 -------k~~gese-----~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-------- 336 (806)
T 3cf2_A 277 -------KLAGESE-----SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 336 (806)
T ss_dssp -------SCTTHHH-----HHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC--------
T ss_pred -------ccchHHH-----HHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc--------
Confidence 2233221 222344444455667999999999763 356777888776421
Q ss_pred eecCceEEEEccCC
Q 005186 453 VSVSNAIFVTASSF 466 (710)
Q Consensus 453 vd~~n~I~IlTSN~ 466 (710)
.-.+++||.|||.
T Consensus 337 -~~~~V~VIaaTN~ 349 (806)
T 3cf2_A 337 -QRAHVIVMAATNR 349 (806)
T ss_dssp -GGGCEEEEEECSS
T ss_pred -ccCCEEEEEecCC
Confidence 1135788999984
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.95 E-value=6.3e-09 Score=124.55 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=70.5
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC-------CCcceEEecCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG-------GKENFICADLC 375 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g-------s~~~fI~iD~s 375 (710)
.+.|+|+++.+..+...+.+ +...+++|+||+|||||++|++||..+.. .+.+++.+|++
T Consensus 169 ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 235 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG 235 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred CcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH
Confidence 45699999988888777632 12236899999999999999999998743 25678888887
Q ss_pred CCCCCCCCCCCccccccccccccccccc--hhhHHHHHHHhC-CCeEEEEeccccCC--------HHHHHHHHhhHhCCc
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKT--LADYVAWELLKK-PLSVVYLENVDKAD--------VHVQNSLSKAIQTGK 444 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t--~~~~L~~al~~~-p~sVI~LDEIDKa~--------~~vqn~LLq~LE~G~ 444 (710)
.... | ..|+|.. ....+...+... ...|||||||+.+. .++++.|..+++.|.
T Consensus 236 ~l~~--------------g--~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~ 299 (854)
T 1qvr_A 236 SLLA--------------G--AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGE 299 (854)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTC
T ss_pred Hhhc--------------c--CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCC
Confidence 5210 0 1122211 112233444433 45799999999987 677888999997653
Q ss_pred ccCCCCeEeecCceEEEEccC
Q 005186 445 LPDSYGREVSVSNAIFVTASS 465 (710)
Q Consensus 445 l~d~~Gr~vd~~n~I~IlTSN 465 (710)
.++|+++|
T Consensus 300 -------------i~~I~at~ 307 (854)
T 1qvr_A 300 -------------LRLIGATT 307 (854)
T ss_dssp -------------CCEEEEEC
T ss_pred -------------eEEEEecC
Confidence 33777777
No 76
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.93 E-value=1.8e-08 Score=102.57 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=74.9
Q ss_pred CcccccHHHHHHHHHHHHHHhcC--CCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTG--HEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g--~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~ 381 (710)
+.|+|+++++..+...+...... +..-+ .+....++|+||+|+|||+++++|+..+ ..+++.+++.....
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~~~-- 87 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMG---ARIPKGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVE-- 87 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTT---CCCCSEEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHH--
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcC---CCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHHHH--
Confidence 34788888887776665543210 00000 0111239999999999999999999987 46788877653110
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC--------------HHHHHHHHhhHhCCcccC
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD--------------VHVQNSLSKAIQTGKLPD 447 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~--------------~~vqn~LLq~LE~G~l~d 447 (710)
.+.|.. ......+.+.......+++||||||.+. ...++.|+..|+.|.-.
T Consensus 88 ---------~~~~~~-----~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~- 152 (254)
T 1ixz_A 88 ---------MFVGVG-----AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD- 152 (254)
T ss_dssp ---------SCTTHH-----HHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT-
T ss_pred ---------HHhhHH-----HHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC-
Confidence 011110 1112233343333345899999998642 13456666666654311
Q ss_pred CCCeEeecCceEEEEccC
Q 005186 448 SYGREVSVSNAIFVTASS 465 (710)
Q Consensus 448 ~~Gr~vd~~n~I~IlTSN 465 (710)
+.+++++++|
T Consensus 153 --------~~~i~~a~t~ 162 (254)
T 1ixz_A 153 --------TAIVVMAATN 162 (254)
T ss_dssp --------CCEEEEEEES
T ss_pred --------CCEEEEEccC
Confidence 2356666666
No 77
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.92 E-value=1.4e-09 Score=103.37 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=80.0
Q ss_pred hcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcC-------CCcceEEecC
Q 005186 302 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG-------GKENFICADL 374 (710)
Q Consensus 302 L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~g-------s~~~fI~iD~ 374 (710)
-.+.++|++++++.+...+.. +....++|+||+|+|||++|+++++.+.. ...+++.+++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred cccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 356799999988887776532 12347899999999999999999998853 2456677776
Q ss_pred CCCCCCCCCCCCcccccccccccccccc--chhhHHHHHH-HhCCCeEEEEeccccCC--------HHHHHHHHhhHhCC
Q 005186 375 CPQDGEMNNPPKFYHQVVGGDSVQFRGK--TLADYVAWEL-LKKPLSVVYLENVDKAD--------VHVQNSLSKAIQTG 443 (710)
Q Consensus 375 s~~~~e~~~~~sl~~~~~~G~~~~f~G~--t~~~~L~~al-~~~p~sVI~LDEIDKa~--------~~vqn~LLq~LE~G 443 (710)
..... +. .+.|. .....+...+ ......||||||+|.+. ..+++.|..+++.+
T Consensus 87 ~~~~~--------------~~--~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~ 150 (195)
T 1jbk_A 87 GALVA--------------GA--KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG 150 (195)
T ss_dssp HHHHT--------------TT--CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT
T ss_pred HHHhc--------------cC--CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC
Confidence 53100 00 01111 1112233333 23446799999999985 45588888888654
Q ss_pred cccCCCCeEeecCceEEEEccCC
Q 005186 444 KLPDSYGREVSVSNAIFVTASSF 466 (710)
Q Consensus 444 ~l~d~~Gr~vd~~n~I~IlTSN~ 466 (710)
+.++|+++|.
T Consensus 151 -------------~~~~i~~~~~ 160 (195)
T 1jbk_A 151 -------------ELHCVGATTL 160 (195)
T ss_dssp -------------SCCEEEEECH
T ss_pred -------------CeEEEEeCCH
Confidence 3458888873
No 78
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.91 E-value=6.3e-09 Score=122.70 Aligned_cols=123 Identities=16% Similarity=0.182 Sum_probs=79.9
Q ss_pred cCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC-------CcceEEecCC
Q 005186 303 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLC 375 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs-------~~~fI~iD~s 375 (710)
.+.|+|+++.++.+...+.+ +...+++|+||+|||||++|++||..+... +..++.+|++
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~ 251 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred CCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHH
Confidence 45699999998887776642 123478999999999999999999987432 3345666665
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC---------CHHHHHHHHhhHhCCccc
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA---------DVHVQNSLSKAIQTGKLP 446 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa---------~~~vqn~LLq~LE~G~l~ 446 (710)
.... ...+.|..+ .....+.+.+......|||||||+.+ ..++++.|.+++++|
T Consensus 252 ~l~~---------~~~~~g~~e-----~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~--- 314 (758)
T 1r6b_X 252 SLLA---------GTKYRGDFE-----KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--- 314 (758)
T ss_dssp ---C---------CCCCSSCHH-----HHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC---
T ss_pred HHhc---------cccccchHH-----HHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCC---
Confidence 3110 011122111 11223444555556799999999988 467788888877654
Q ss_pred CCCCeEeecCceEEEEccC
Q 005186 447 DSYGREVSVSNAIFVTASS 465 (710)
Q Consensus 447 d~~Gr~vd~~n~I~IlTSN 465 (710)
+.++|.++|
T Consensus 315 ----------~~~~I~at~ 323 (758)
T 1r6b_X 315 ----------KIRVIGSTT 323 (758)
T ss_dssp ----------CCEEEEEEC
T ss_pred ----------CeEEEEEeC
Confidence 345788777
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.90 E-value=5.8e-09 Score=123.19 Aligned_cols=114 Identities=17% Similarity=0.218 Sum_probs=70.1
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCC-------CcceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs-------~~~fI~iD~s~ 376 (710)
+.|+|+++.++.+...+.+ +...++||+||+|||||.+|++||+.+... +..++.+|++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~ 246 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT 246 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred CCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc
Confidence 4599999999988877652 123479999999999999999999998543 33444444411
Q ss_pred CCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecC
Q 005186 377 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 456 (710)
Q Consensus 377 ~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~ 456 (710)
.|.|..+ .....+.+.+.....+||||| ...++++.|+++|+.|
T Consensus 247 --------------~~~G~~e-----~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~------------- 290 (758)
T 3pxi_A 247 --------------KYRGEFE-----DRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG------------- 290 (758)
T ss_dssp --------------------C-----TTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS-------------
T ss_pred --------------cccchHH-----HHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcC-------------
Confidence 1222111 112345555566677899999 6678999999999865
Q ss_pred ceEEEEccCC
Q 005186 457 NAIFVTASSF 466 (710)
Q Consensus 457 n~I~IlTSN~ 466 (710)
++++|.+||.
T Consensus 291 ~v~~I~at~~ 300 (758)
T 3pxi_A 291 ELQCIGATTL 300 (758)
T ss_dssp SCEEEEECCT
T ss_pred CEEEEeCCCh
Confidence 3558888884
No 80
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.86 E-value=3.7e-08 Score=101.95 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=61.4
Q ss_pred CcccccHHHHHHHHHHHHHHhcC--CCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTG--HEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 381 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g--~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~ 381 (710)
+.|+|+++++..+...+...... +..-+ -+....++|+||+|+|||+|+++|+..+ ..+++.+++.....
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~---~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~~~~~-- 111 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMG---ARIPKGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVE-- 111 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTT---CCCCCEEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHH--
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcC---CCCCCeEEEECCCcChHHHHHHHHHHHc---CCCEEEecHHHHHH--
Confidence 45889998888877666543210 00000 0111239999999999999999999987 46788877653110
Q ss_pred CCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC
Q 005186 382 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA 428 (710)
Q Consensus 382 ~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa 428 (710)
.+.|. .......+.+.......+++||||||.+
T Consensus 112 ---------~~~~~-----~~~~i~~~~~~~~~~~~~i~~iDeid~l 144 (278)
T 1iy2_A 112 ---------MFVGV-----GAARVRDLFETAKRHAPCIVFIDEIDAV 144 (278)
T ss_dssp ---------STTTH-----HHHHHHHHHHHHHTSCSEEEEEETHHHH
T ss_pred ---------HHhhH-----HHHHHHHHHHHHHhcCCcEEehhhhHhh
Confidence 01111 0111233444444344589999999854
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.86 E-value=3.2e-10 Score=135.05 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=86.9
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.++|++++++.|...+.........-.....++...+||+||+|||||++|++||..+ ..+|+.++++...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~----- 548 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELL----- 548 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH---TCCCCCCCCSSST-----
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh---CCCEEEEechHhh-----
Confidence 45788998888887766432110000000011244579999999999999999999998 5778888887521
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC--------------CHHHHHHHHhhHhCCcccCCC
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA--------------DVHVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa--------------~~~vqn~LLq~LE~G~l~d~~ 449 (710)
..|+|.... ....+....+....+||||||||++ ...+++.|++.|+...
T Consensus 549 ------~~~~g~~~~-----~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~----- 612 (806)
T 1ypw_A 549 ------TMWFGESEA-----NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS----- 612 (806)
T ss_dssp ------TCCTTTSSH-----HHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------
T ss_pred ------hhhcCccHH-----HHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-----
Confidence 134443322 1234455555555689999999974 3467788888887431
Q ss_pred CeEeecCceEEEEccCC
Q 005186 450 GREVSVSNAIFVTASSF 466 (710)
Q Consensus 450 Gr~vd~~n~I~IlTSN~ 466 (710)
...+++||+|||.
T Consensus 613 ----~~~~v~vI~tTN~ 625 (806)
T 1ypw_A 613 ----TKKNVFIIGATNR 625 (806)
T ss_dssp -------CCBCCCCCBS
T ss_pred ----ccCCeEEEEecCC
Confidence 2257889999996
No 82
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.84 E-value=2.4e-09 Score=126.77 Aligned_cols=136 Identities=16% Similarity=0.139 Sum_probs=90.2
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
..|.|.+++++.|.+++.........-.+...+++..+||+||||||||++|++||..+ +.+|+.++.+..-
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~~l~----- 548 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELL----- 548 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCEEEECCHHHHH-----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCceEEeccchhh-----
Confidence 34778888888888777543211000000011345579999999999999999999988 7899998877421
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCCH--------------HHHHHHHhhHhCCcccCCC
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV--------------HVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~--------------~vqn~LLq~LE~G~l~d~~ 449 (710)
..|+|..+. .+..++...++...+||||||||.+-+ .+.+.||..|+.-.
T Consensus 549 ------s~~vGese~-----~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~----- 612 (806)
T 3cf2_A 549 ------TMWFGESEA-----NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS----- 612 (806)
T ss_dssp ------TTTCSSCHH-----HHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-----
T ss_pred ------ccccchHHH-----HHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-----
Confidence 134554332 234556666666679999999997632 36788888887421
Q ss_pred CeEeecCceEEEEccCCC
Q 005186 450 GREVSVSNAIFVTASSFV 467 (710)
Q Consensus 450 Gr~vd~~n~I~IlTSN~g 467 (710)
...+++||.|||.-
T Consensus 613 ----~~~~V~vi~aTN~p 626 (806)
T 3cf2_A 613 ----TKKNVFIIGATNRP 626 (806)
T ss_dssp ----SSSSEEEECC-CCS
T ss_pred ----CCCCEEEEEeCCCc
Confidence 12468899999963
No 83
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.74 E-value=8.8e-09 Score=114.70 Aligned_cols=144 Identities=10% Similarity=0.084 Sum_probs=95.0
Q ss_pred HhHHHHHHHhcCcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHH-HHHHcCCCcceEE
Q 005186 293 SNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIAL-AEIIYGGKENFIC 371 (710)
Q Consensus 293 ~~lk~L~k~L~~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraL-Ae~L~gs~~~fI~ 371 (710)
..+..|.+.+.. |+||++++.+|.-++ .|.... .|.+.++||.|+||+ ||.+|++| +..+- ...|..
T Consensus 203 ~~~~~l~~sIap-I~G~e~vK~aLll~L----~GG~~k----~rgdihVLL~G~PGt-KS~Lar~i~~~i~p--R~~ft~ 270 (506)
T 3f8t_A 203 DPLTTFARAIAP-LPGAEEVGKMLALQL----FSCVGK----NSERLHVLLAGYPVV-CSEILHHVLDHLAP--RGVYVD 270 (506)
T ss_dssp CHHHHHHHHHCC-STTCHHHHHHHHHHH----TTCCSS----GGGCCCEEEESCHHH-HHHHHHHHHHHTCS--SEEEEE
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHHH----cCCccc----cCCceeEEEECCCCh-HHHHHHHHHHHhCC--CeEEec
Confidence 446778888999 999998876655444 332211 145679999999999 99999999 87652 122322
Q ss_pred ecCCCCCCCCCCCCCccccccccc--cccccccchhhHHHHHHHhCCCeEEEEeccccCCHHHHHHHHhhHhCCcccCCC
Q 005186 372 ADLCPQDGEMNNPPKFYHQVVGGD--SVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY 449 (710)
Q Consensus 372 iD~s~~~~e~~~~~sl~~~~~~G~--~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d~~ 449 (710)
..++.. .++.+. +. .|.. .-.+++..+..+|+|||||+++++..|.+|+++||+|.++-.
T Consensus 271 g~~ss~------------~gLt~s~r~~--tG~~---~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~- 332 (506)
T 3f8t_A 271 LRRTEL------------TDLTAVLKED--RGWA---LRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD- 332 (506)
T ss_dssp GGGCCH------------HHHSEEEEES--SSEE---EEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET-
T ss_pred CCCCCc------------cCceEEEEcC--CCcc---cCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC-
Confidence 222210 011111 00 0100 012334445679999999999999999999999999998876
Q ss_pred CeEeecCceEEEEccCCC
Q 005186 450 GREVSVSNAIFVTASSFV 467 (710)
Q Consensus 450 Gr~vd~~n~I~IlTSN~g 467 (710)
|..+. .++.||+|+|-.
T Consensus 333 G~~lp-arf~VIAA~NP~ 349 (506)
T 3f8t_A 333 GIALN-ARCAVLAAINPG 349 (506)
T ss_dssp TEEEE-CCCEEEEEECCC
T ss_pred CEEcC-CCeEEEEEeCcc
Confidence 66322 458899999963
No 84
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.70 E-value=1.2e-07 Score=98.80 Aligned_cols=98 Identities=20% Similarity=0.195 Sum_probs=61.5
Q ss_pred CcccccHHHHHHHHHHHHHHh--------cCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQRR--------TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r--------~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+.|.|.+++++.|.+.+.... .++.- +. .++|+||+|+|||+||++||..+ ...++.++..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~-------~~-GvlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~ 78 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVT-------PA-GVLLAGPPGCGKTLLAKAVANES---GLNFISVKGP 78 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCC-------CS-EEEEESSTTSCHHHHHHHHHHHT---TCEEEEEETT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC-------CC-eEEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcH
Confidence 457888888888776653221 12221 22 39999999999999999999987 4578888876
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccC
Q 005186 376 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA 428 (710)
Q Consensus 376 ~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa 428 (710)
.... .+.|.. ....+.+.........+|+|+||||.+
T Consensus 79 ~l~~-----------~~~~~~-----~~~i~~vf~~a~~~~p~i~~~Deid~~ 115 (274)
T 2x8a_A 79 ELLN-----------MYVGES-----ERAVRQVFQRAKNSAPCVIFFDEVDAL 115 (274)
T ss_dssp TTCS-----------STTHHH-----HHHHHHHHHHHHHTCSEEEEEETCTTT
T ss_pred HHHh-----------hhhhHH-----HHHHHHHHHHHHhcCCCeEeeehhhhh
Confidence 4211 111111 111234444443445689999999975
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.62 E-value=1.2e-07 Score=102.19 Aligned_cols=146 Identities=13% Similarity=0.079 Sum_probs=86.6
Q ss_pred cCcccccHHHHHHHHHHH-HHHhcCCCCCCCCCCCCCeEEEE--ecCCCCchhHHHHHHHHHHcC------CCcceEEec
Q 005186 303 TEKIDWQDEAISVISQTI-AQRRTGHEDHHGASPRRDIWFNF--TGPDLCGKRKIAIALAEIIYG------GKENFICAD 373 (710)
Q Consensus 303 ~~~ViGQdeAi~~I~~aI-~~~r~g~~~~~~~~~r~~~~lLf--~GP~GvGKT~LAraLAe~L~g------s~~~fI~iD 373 (710)
...++|+++.++.|...+ .....+... ....+++ +||+|+|||++++++++.+.. ....++.++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~-------~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGL-------SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCB-------CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCC-------CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 366999999999999888 766543111 2347888 999999999999999987742 135677888
Q ss_pred CCCCCCCCCCCCCcccc--cccccccccccc---chhhHHHHHHHh-CCCeEEEEeccccCC------HHHHHHHHhhHh
Q 005186 374 LCPQDGEMNNPPKFYHQ--VVGGDSVQFRGK---TLADYVAWELLK-KPLSVVYLENVDKAD------VHVQNSLSKAIQ 441 (710)
Q Consensus 374 ~s~~~~e~~~~~sl~~~--~~~G~~~~f~G~---t~~~~L~~al~~-~p~sVI~LDEIDKa~------~~vqn~LLq~LE 441 (710)
|.... ....+... ...|......+. .....+...+.. ....||+|||++.+. ..++..|++.++
T Consensus 94 ~~~~~----~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 94 AFNAP----NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHE 169 (412)
T ss_dssp GGGCC----SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHH
T ss_pred CCCCC----CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHH
Confidence 75311 11011100 001111000111 122344444442 345799999999874 578888888887
Q ss_pred CCcccCCCCeEeecCceEEEEccC
Q 005186 442 TGKLPDSYGREVSVSNAIFVTASS 465 (710)
Q Consensus 442 ~G~l~d~~Gr~vd~~n~I~IlTSN 465 (710)
+...... -.++.||+|+|
T Consensus 170 ~~~~~~~------~~~v~lI~~~~ 187 (412)
T 1w5s_A 170 EIPSRDG------VNRIGFLLVAS 187 (412)
T ss_dssp HSCCTTS------CCBEEEEEEEE
T ss_pred hcccCCC------CceEEEEEEec
Confidence 5321000 13566888776
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.59 E-value=9.7e-08 Score=113.72 Aligned_cols=135 Identities=14% Similarity=0.100 Sum_probs=87.1
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 383 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~ 383 (710)
+.|+|++++++.|.+.+.........-..-..++...++|+||+|||||++|++||..+ ..+++.+++.....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~i~v~~~~l~~---- 276 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS---- 276 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEEEEEEHHHHSS----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcEEEEEchHhhh----
Confidence 45999999999999888763221000000001234589999999999999999999987 67889998874211
Q ss_pred CCCccccccccccccccccchhhHHHHHHHhCCCeEEEEeccccCC-----------HHHHHHHHhhHhCCcccCCCCeE
Q 005186 384 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKLPDSYGRE 452 (710)
Q Consensus 384 ~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sVI~LDEIDKa~-----------~~vqn~LLq~LE~G~l~d~~Gr~ 452 (710)
.+.|... . ....+.+.......+|+|||||+.+. ..+++.|+..|+.-.-
T Consensus 277 -------~~~g~~~----~-~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~------- 337 (806)
T 1ypw_A 277 -------KLAGESE----S-NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ------- 337 (806)
T ss_dssp -------SSTTHHH----H-HHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-------
T ss_pred -------hhhhhHH----H-HHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-------
Confidence 1112111 1 12233333334445899999998653 3578888888874321
Q ss_pred eecCceEEEEccCC
Q 005186 453 VSVSNAIFVTASSF 466 (710)
Q Consensus 453 vd~~n~I~IlTSN~ 466 (710)
-.++++|+|||.
T Consensus 338 --~~~v~vI~atn~ 349 (806)
T 1ypw_A 338 --RAHVIVMAATNR 349 (806)
T ss_dssp --TSCCEEEEECSC
T ss_pred --cccEEEecccCC
Confidence 136788889886
No 87
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.37 E-value=1.4e-06 Score=83.82 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=62.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc-CCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY-GGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 417 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~-gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~ 417 (710)
..++|+||+|+|||+|+++|+..+. ..+..++.+++...-. .+.. .+..... ..+...+.. .
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~-----------~~~~---~~~~~~~-~~~~~~~~~--~ 101 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF-----------RLKH---LMDEGKD-TKFLKTVLN--S 101 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH-----------HHHH---HHHHTCC-SHHHHHHHT--C
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH-----------HHHH---HhcCchH-HHHHHHhcC--C
Confidence 3899999999999999999999885 2223334444432100 0000 0000000 122333332 4
Q ss_pred eEEEEeccc--cCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCcc
Q 005186 418 SVVYLENVD--KADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 469 (710)
Q Consensus 418 sVI~LDEID--Ka~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~ 469 (710)
.+|+|||++ .+++..+..|.++++.-. . .+..+|+|||....
T Consensus 102 ~llilDE~~~~~~~~~~~~~l~~ll~~~~-~---------~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 102 PVLVLDDLGSERLSDWQRELISYIITYRY-N---------NLKSTIITTNYSLQ 145 (180)
T ss_dssp SEEEEETCSSSCCCHHHHHHHHHHHHHHH-H---------TTCEEEEECCCCSC
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHHHH-H---------cCCCEEEEcCCChh
Confidence 699999998 678888888888886421 0 23458889997543
No 88
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.33 E-value=3e-07 Score=89.99 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=60.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
.+++|+||+|+|||++|++|+..+.....+++.+++..... .+... +.... ...+.+.+... .
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~-~~~~~~~~~~~--~ 117 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR-----------ELKHS---LQDQT-MNEKLDYIKKV--P 117 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH-----------HHHHC------CC-CHHHHHHHHHS--S
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH-----------HHHHH---hccch-HHHHHHHhcCC--C
Confidence 48999999999999999999998876667777777763100 00000 00001 12233444443 4
Q ss_pred EEEEeccccCCH--HHHHHHH-hhHhCCcccCCCCeEeecCceEEEEccCCCcc
Q 005186 419 VVYLENVDKADV--HVQNSLS-KAIQTGKLPDSYGREVSVSNAIFVTASSFVED 469 (710)
Q Consensus 419 VI~LDEIDKa~~--~vqn~LL-q~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~ 469 (710)
+||||||+.... ..+..|+ .+++.. +. .+..+|+|||....
T Consensus 118 ~lilDei~~~~~~~~~~~~ll~~~l~~~-~~---------~~~~~i~tsn~~~~ 161 (202)
T 2w58_A 118 VLMLDDLGAEAMSSWVRDDVFGPILQYR-MF---------ENLPTFFTSNFDMQ 161 (202)
T ss_dssp EEEEEEECCC---CCGGGTTHHHHHHHH-HH---------TTCCEEEEESSCHH
T ss_pred EEEEcCCCCCcCCHHHHHHHHHHHHHHH-Hh---------CCCCEEEEcCCCHH
Confidence 999999976443 3355344 355432 11 12358999997443
No 89
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.09 E-value=1.4e-06 Score=92.27 Aligned_cols=104 Identities=12% Similarity=-0.028 Sum_probs=58.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc-CCCcceEEecCCCCCCCCCCCCCcccccccc-ccccccccchhhHHHHHHHhCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY-GGKENFICADLCPQDGEMNNPPKFYHQVVGG-DSVQFRGKTLADYVAWELLKKP 416 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~-gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G-~~~~f~G~t~~~~L~~al~~~p 416 (710)
.+++|+||+|||||.||++||..+. ..+.+++.+.+...-. .+.+ ...+ .. ..+.+.+...
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~-----------~l~~~~~~~----~~-~~~~~~~~~~- 215 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI-----------DVKNAISNG----SV-KEEIDAVKNV- 215 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHH-----------HHHCCCC---------CCTTHHHHTS-
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHH-----------HHHHHhccc----hH-HHHHHHhcCC-
Confidence 4899999999999999999999886 5556676666552100 0000 0000 00 1122333333
Q ss_pred CeEEEEeccccC--CHHHHHHHH-hhHhCCcccCCCCeEeecCceEEEEccCCCccc
Q 005186 417 LSVVYLENVDKA--DVHVQNSLS-KAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 470 (710)
Q Consensus 417 ~sVI~LDEIDKa--~~~vqn~LL-q~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~~~ 470 (710)
.|||||||+.. +...+..|+ .+|+... . .+..+|+|||.....
T Consensus 216 -~lLiiDdig~~~~~~~~~~~ll~~ll~~r~-~---------~~~~~IitSN~~~~~ 261 (308)
T 2qgz_A 216 -PVLILDDIGAEQATSWVRDEVLQVILQYRM-L---------EELPTFFTSNYSFAD 261 (308)
T ss_dssp -SEEEEETCCC------CTTTTHHHHHHHHH-H---------HTCCEEEEESSCHHH
T ss_pred -CEEEEcCCCCCCCCHHHHHHHHHHHHHHHH-H---------CCCcEEEECCCCHHH
Confidence 59999999654 444444343 3555321 1 123489999975543
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.05 E-value=8.4e-06 Score=77.15 Aligned_cols=89 Identities=12% Similarity=0.099 Sum_probs=61.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 419 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sV 419 (710)
.++|+||+|+|||+|+++|+..+.......+.++...... . . +.. ...|
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~---------------~--~-------------~~~-~~~l 86 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPL---------------T--D-------------AAF-EAEY 86 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCC---------------C--G-------------GGG-GCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhH---------------H--H-------------HHh-CCCE
Confidence 7999999999999999999998864444466666653100 0 0 011 2369
Q ss_pred EEEeccccCCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccCCCc
Q 005186 420 VYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVE 468 (710)
Q Consensus 420 I~LDEIDKa~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN~g~ 468 (710)
|+|||++.+....+..|+++|+.-. . . ..+++|+|||...
T Consensus 87 LilDE~~~~~~~~~~~l~~li~~~~--~-~------g~~~iiits~~~p 126 (149)
T 2kjq_A 87 LAVDQVEKLGNEEQALLFSIFNRFR--N-S------GKGFLLLGSEYTP 126 (149)
T ss_dssp EEEESTTCCCSHHHHHHHHHHHHHH--H-H------TCCEEEEEESSCT
T ss_pred EEEeCccccChHHHHHHHHHHHHHH--H-c------CCcEEEEECCCCH
Confidence 9999999998877888999886321 1 1 1234777888644
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.92 E-value=3.7e-05 Score=101.09 Aligned_cols=117 Identities=11% Similarity=0.049 Sum_probs=69.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcc--ccccccccccccccchhhHHHHHHHhCCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPL 417 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~--~~~~~G~~~~f~G~t~~~~L~~al~~~p~ 417 (710)
++||+||||||||.+|+.+...+ ....++.++++.... ...+. ...+......-.|.. .+.......
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~--~~~~~~~infsa~ts----~~~~~~~i~~~~~~~~~~~g~~-----~~P~~~gk~ 1337 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNS--SLYDVVGINFSKDTT----TEHILSALHRHTNYVTTSKGLT-----LLPKSDIKN 1337 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--SSCEEEEEECCTTCC----HHHHHHHHHHHBCCEEETTTEE-----EEEBSSSSC
T ss_pred eEEEECCCCCCHHHHHHHHHhcC--CCCceEEEEeecCCC----HHHHHHHHHHHhhhccccCCcc-----ccCCCCCce
Confidence 89999999999999995444333 245677788875311 00000 000000000000000 000001123
Q ss_pred eEEEEeccccCCH------HHHHHHHhhHhCCcccCCC-CeEeecCceEEEEccCCC
Q 005186 418 SVVYLENVDKADV------HVQNSLSKAIQTGKLPDSY-GREVSVSNAIFVTASSFV 467 (710)
Q Consensus 418 sVI~LDEIDKa~~------~vqn~LLq~LE~G~l~d~~-Gr~vd~~n~I~IlTSN~g 467 (710)
.|||||||+.... .+...|.|.||.|.+.+.. +..+.+.++.||+|+|..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp 1394 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPP 1394 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCT
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCC
Confidence 6999999886543 4889999999998877643 455667889999999963
No 92
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.90 E-value=0.00014 Score=77.09 Aligned_cols=91 Identities=8% Similarity=0.027 Sum_probs=60.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCC-cceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHh---
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGK-ENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK--- 414 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~-~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~--- 414 (710)
..++|+||.|.||++.+++|++.+...+ .++..+.... . . + ...+.+.+..
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------~-~-----~-~~~l~~~~~~~pl 73 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP------------------N-T-----D-WNAIFSLCQAMSL 73 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT------------------T-C-----C-HHHHHHHHHHHHH
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC------------------C-C-----C-HHHHHHHhcCcCC
Confidence 4899999999999999999999875321 1211111110 0 0 0 1233333332
Q ss_pred -CCCeEEEEecccc-CCHHHHHHHHhhHhCCcccCCCCeEeecCceEEEEccC
Q 005186 415 -KPLSVVYLENVDK-ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASS 465 (710)
Q Consensus 415 -~p~sVI~LDEIDK-a~~~vqn~LLq~LE~G~l~d~~Gr~vd~~n~I~IlTSN 465 (710)
.++.||+|||++. +....++.|++++++-- .+++||++++
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~-----------~~~~~il~~~ 115 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLH-----------DDLLLIVRGN 115 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCB-----------TTEEEEEEES
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCC-----------CCeEEEEEcC
Confidence 4578999999999 99999999999998521 3566777665
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.77 E-value=7.6e-05 Score=98.24 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=74.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 419 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sV 419 (710)
..++.||+|||||+++++||+.+ +.++++++|+..-. + ..+...+.+++.. ...
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~l---g~~~v~~nc~e~ld---------------~------~~lg~~~~g~~~~--Gaw 700 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNL---GRVVVVFNCDDSFD---------------Y------QVLSRLLVGITQI--GAW 700 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT---TCCCEEEETTSSCC---------------H------HHHHHHHHHHHHH--TCE
T ss_pred CCcccCCCCCCcHHHHHHHHHHh---CCcEEEEECCCCCC---------------h------hHhhHHHHHHHhc--CCE
Confidence 67899999999999999999999 78999999995211 0 1112344555544 379
Q ss_pred EEEeccccCCHHHHHHH-------HhhHhCCcc-cCCCCeEeecC-ceEEEEccCCCc
Q 005186 420 VYLENVDKADVHVQNSL-------SKAIQTGKL-PDSYGREVSVS-NAIFVTASSFVE 468 (710)
Q Consensus 420 I~LDEIDKa~~~vqn~L-------Lq~LE~G~l-~d~~Gr~vd~~-n~I~IlTSN~g~ 468 (710)
++||||++++++++..| ..++.++.. ....|..+.+. ++.|++|.|-|.
T Consensus 701 ~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy 758 (2695)
T 4akg_A 701 GCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGY 758 (2695)
T ss_dssp EEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCS
T ss_pred eeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCc
Confidence 99999999999999988 455555541 12346667665 477889999653
No 94
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.71 E-value=5.3e-05 Score=75.98 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYG 364 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~g 364 (710)
..++|+||+|+|||++|.+||+.+.|
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 37999999999999999999999854
No 95
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.57 E-value=8.3e-05 Score=77.32 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=54.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCC-
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL- 417 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~- 417 (710)
..++|+||+|||||++|.+||..+. -...++.+. . .|.. ...+.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~----l~G~vn~~~--~------------------~f~l-----------~~~~~k 149 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP----FYGCVNWTN--E------------------NFPF-----------NDCVDK 149 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS----CEEECCTTC--S------------------SCTT-----------GGGSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc----ccceeeccc--c------------------cccc-----------cccccc
Confidence 4799999999999999999998641 112222221 0 0100 00011
Q ss_pred eEEEEeccccCCHHHHHHHHhhHhCCcccC-C-CCeEeecCceEEEEccCCC
Q 005186 418 SVVYLENVDKADVHVQNSLSKAIQTGKLPD-S-YGREVSVSNAIFVTASSFV 467 (710)
Q Consensus 418 sVI~LDEIDKa~~~vqn~LLq~LE~G~l~d-~-~Gr~vd~~n~I~IlTSN~g 467 (710)
.|+++||. .+..+.++.+..+++.+.+.- . +.....+..+-||+|||..
T Consensus 150 ~i~l~Ee~-~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~ 200 (267)
T 1u0j_A 150 MVIWWEEG-KMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTN 200 (267)
T ss_dssp SEEEECSC-CEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSC
T ss_pred EEEEeccc-cchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCC
Confidence 35555555 455567777888886544332 2 2223455677899999973
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.38 E-value=0.00053 Score=91.22 Aligned_cols=104 Identities=13% Similarity=0.006 Sum_probs=73.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 419 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sV 419 (710)
...+.||+|||||++++.||+.+ +.+++.++|+..-. + . .....+.+++.. ++.
T Consensus 606 gg~~~GPaGtGKTet~k~La~~l---gr~~~vfnC~~~~d---------------~--~----~~g~i~~G~~~~--GaW 659 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQL---GRFVLVFCCDEGFD---------------L--Q----AMSRIFVGLCQC--GAW 659 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT---TCCEEEEECSSCCC---------------H--H----HHHHHHHHHHHH--TCE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHh---CCeEEEEeCCCCCC---------------H--H----HHHHHHhhHhhc--CcE
Confidence 44788999999999999999999 78899999985211 0 0 111234555443 467
Q ss_pred EEEeccccCCHHHHHHHHhhHh---------CCcccCCCCeEeecC-ceEEEEccCCCcc
Q 005186 420 VYLENVDKADVHVQNSLSKAIQ---------TGKLPDSYGREVSVS-NAIFVTASSFVED 469 (710)
Q Consensus 420 I~LDEIDKa~~~vqn~LLq~LE---------~G~l~d~~Gr~vd~~-n~I~IlTSN~g~~ 469 (710)
.+||||++++++++..+.+.|. ..++.-..|+.+.+. ++.|++|.|.|..
T Consensus 660 ~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~ 719 (3245)
T 3vkg_A 660 GCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYA 719 (3245)
T ss_dssp EEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGG
T ss_pred EEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCcc
Confidence 8999999999999999888665 334443337777776 4788999997653
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.22 E-value=0.00074 Score=70.50 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=40.3
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
..++|.++.++.|.. +.. ..++++||.|+|||+|++.+++.+ ....+.+++..
T Consensus 13 ~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~ 65 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRK 65 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred HHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchh
Confidence 347898877776655 421 289999999999999999999887 23467777764
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.22 E-value=0.00082 Score=70.09 Aligned_cols=52 Identities=17% Similarity=0.045 Sum_probs=41.5
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..++|.++.++.|...+.. + ..++++||.|+|||+|++.+++.+ . .+.+++.
T Consensus 12 ~~~~gR~~el~~L~~~l~~---~------------~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~ 63 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN---Y------------PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCR 63 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH---C------------SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHH
T ss_pred HhcCChHHHHHHHHHHHhc---C------------CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEee
Confidence 3488999888888877753 1 289999999999999999999875 2 6677765
No 99
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.21 E-value=0.00093 Score=72.16 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=60.4
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCC-CcceEEecCCCCCCCCCCCC--CccccccccccccccccchhhHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLCPQDGEMNNPP--KFYHQVVGGDSVQFRGKTLADYVAWELL 413 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs-~~~fI~iD~s~~~~e~~~~~--sl~~~~~~G~~~~f~G~t~~~~L~~al~ 413 (710)
+.+.++++||+|+|||++.++|+..+... ...++.+.-.. ++...+ .++....++ ....++...+..+++
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~---e~~~~~~~~~v~q~~~~----~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI---EFVHESKKCLVNQREVH----RDTLGFSEALRSALR 194 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC---CSCCCCSSSEEEEEEBT----TTBSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH---Hhhhhccccceeeeeec----cccCCHHHHHHHHhh
Confidence 34589999999999999999999887432 23333322111 121111 111111111 112344556778887
Q ss_pred hCCCeEEEEeccccCCHHHHHHHHhhHhCC
Q 005186 414 KKPLSVVYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 414 ~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
..| .||++||+- +.+....++++.++|
T Consensus 195 ~~P-dvillDEp~--d~e~~~~~~~~~~~G 221 (356)
T 3jvv_A 195 EDP-DIILVGEMR--DLETIRLALTAAETG 221 (356)
T ss_dssp SCC-SEEEESCCC--SHHHHHHHHHHHHTT
T ss_pred hCc-CEEecCCCC--CHHHHHHHHHHHhcC
Confidence 766 799999997 688888888887765
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.17 E-value=4.8e-05 Score=100.83 Aligned_cols=120 Identities=11% Similarity=0.114 Sum_probs=71.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 419 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sV 419 (710)
++||+||+|||||.++......+. +.+++.++++.+.. ...+. +.+.....++.....|.+..........|
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~--~~~~~~infS~~Tt----a~~l~--~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFP--DFEVVSLNFSSATT----PELLL--KTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCT--TEEEEEECCCTTCC----HHHHH--HHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhCC--CCceEEEEeeCCCC----HHHHH--HHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 799999999999977654333332 45678899986321 11110 00000000000000000001101112359
Q ss_pred EEEeccccCCHH------HHHHHHhhHhCCcccCC-CCeEeecCceEEEEccCCC
Q 005186 420 VYLENVDKADVH------VQNSLSKAIQTGKLPDS-YGREVSVSNAIFVTASSFV 467 (710)
Q Consensus 420 I~LDEIDKa~~~------vqn~LLq~LE~G~l~d~-~Gr~vd~~n~I~IlTSN~g 467 (710)
+|||||+.+.++ +...|.++||.|.+.+. .+..+.+.+..||+|.|..
T Consensus 1378 lFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp 1432 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPP 1432 (3245)
T ss_dssp EEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCT
T ss_pred EEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCC
Confidence 999999987754 89999999999888875 4456677899999999864
No 101
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.12 E-value=0.0019 Score=66.69 Aligned_cols=95 Identities=20% Similarity=0.222 Sum_probs=55.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCC-CcceEEecCCCCCCCCCCCC--CccccccccccccccccchhhHHHHHHHh
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLCPQDGEMNNPP--KFYHQVVGGDSVQFRGKTLADYVAWELLK 414 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs-~~~fI~iD~s~~~~e~~~~~--sl~~~~~~G~~~~f~G~t~~~~L~~al~~ 414 (710)
...++++||+|+|||++.++|+..+... ...++..+-. . +|.... .++.+..+|.+. ..+...+..++..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i--~~~~~~~~~~v~q~~~gl~~----~~l~~~la~aL~~ 97 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-I--EYVFKHKKSIVNQREVGEDT----KSFADALRAALRE 97 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-C--CSCCCCSSSEEEEEEBTTTB----SCHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-c--eeecCCcceeeeHHHhCCCH----HHHHHHHHHHHhh
Confidence 3589999999999999999999877422 2233222211 1 011111 111121222211 2344567788887
Q ss_pred CCCeEEEEeccccCCHHHHHHHHhhHhC
Q 005186 415 KPLSVVYLENVDKADVHVQNSLSKAIQT 442 (710)
Q Consensus 415 ~p~sVI~LDEIDKa~~~vqn~LLq~LE~ 442 (710)
.| .+|++||.- ++.....+++..++
T Consensus 98 ~p-~illlDEp~--D~~~~~~~l~~~~~ 122 (261)
T 2eyu_A 98 DP-DVIFVGEMR--DLETVETALRAAET 122 (261)
T ss_dssp CC-SEEEESCCC--SHHHHHHHHHHHHT
T ss_pred CC-CEEEeCCCC--CHHHHHHHHHHHcc
Confidence 65 799999997 66655555555443
No 102
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.11 E-value=0.0013 Score=73.09 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=63.9
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHcCCCc-ceEEecCCCCCCCCCCCC
Q 005186 307 DWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE-NFICADLCPQDGEMNNPP 385 (710)
Q Consensus 307 iGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~-~fI~iD~s~~~~e~~~~~ 385 (710)
-+|.+|+..+...|.. +.+.+++.|++|||||+++.+++..+..... .++.+-.+.... .
T Consensus 28 ~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa-----~ 88 (459)
T 3upu_A 28 EGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAK-----K 88 (459)
T ss_dssp HHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHH-----H
T ss_pred HHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHH-----H
Confidence 3788888877766642 1238999999999999999999988864433 333321110000 0
Q ss_pred CccccccccccccccccchhhHHHHHHH-------------------hCCCeEEEEeccccCCHHHHHHHHhhHh
Q 005186 386 KFYHQVVGGDSVQFRGKTLADYVAWELL-------------------KKPLSVVYLENVDKADVHVQNSLSKAIQ 441 (710)
Q Consensus 386 sl~~~~~~G~~~~f~G~t~~~~L~~al~-------------------~~p~sVI~LDEIDKa~~~vqn~LLq~LE 441 (710)
.+ ....|. .+.++ ...+. ...+.+|++||+..++...+..|++.+.
T Consensus 89 ~l--~~~~~~----~~~T~----h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 89 IL--SKLSGK----EASTI----HSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP 153 (459)
T ss_dssp HH--HHHHSS----CEEEH----HHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred HH--Hhhhcc----chhhH----HHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc
Confidence 00 000000 00010 11111 1246799999999999999999999886
No 103
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.11 E-value=0.001 Score=70.99 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=45.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
..++|+||+|+|||+||.++|.. .|....|+.+...+. . . . +.. ........+.+.+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~~~eE~----v---~----~---~~~--~le~~l~~i~~~l~~~~-- 184 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-LGGKDKYATVRFGEP----L---S----G---YNT--DFNVFVDDIARAMLQHR-- 184 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEEEBSCS----S---T----T---CBC--CHHHHHHHHHHHHHHCS--
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEecchhh----h---h----h---hhc--CHHHHHHHHHHHHhhCC--
Confidence 36799999999999999999987 344445666533321 0 0 0 110 01122344556666655
Q ss_pred EEEEeccccCCH
Q 005186 419 VVYLENVDKADV 430 (710)
Q Consensus 419 VI~LDEIDKa~~ 430 (710)
+||||+|..+..
T Consensus 185 LLVIDsI~aL~~ 196 (331)
T 2vhj_A 185 VIVIDSLKNVIG 196 (331)
T ss_dssp EEEEECCTTTC-
T ss_pred EEEEeccccccc
Confidence 999999998754
No 104
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.82 E-value=0.0033 Score=68.11 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=55.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCC-CcceEEecCCCCCCCCCCCC--CccccccccccccccccchhhHHHHHHHh
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLCPQDGEMNNPP--KFYHQVVGGDSVQFRGKTLADYVAWELLK 414 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs-~~~fI~iD~s~~~~e~~~~~--sl~~~~~~G~~~~f~G~t~~~~L~~al~~ 414 (710)
...++++||+|+|||++.++|+..+... ...++.++-.. ++.... .++++..+|.+. ..+...+..+++.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~---e~~~~~~~~~v~Q~~~g~~~----~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI---EYVFKHKKSIVNQREVGEDT----KSFADALRAALRE 208 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC---CSCCCCSSSEEEEEEBTTTB----SCSHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH---hhhhccCceEEEeeecCCCH----HHHHHHHHHHhhh
Confidence 3589999999999999999999877432 23343443221 111111 111221122111 2344567777777
Q ss_pred CCCeEEEEeccccCCHHHHHHHHhhHhCC
Q 005186 415 KPLSVVYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 415 ~p~sVI~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
.| .+|++||+- +++....++++...|
T Consensus 209 ~p-d~illdE~~--d~e~~~~~l~~~~~g 234 (372)
T 2ewv_A 209 DP-DVIFVGEMR--DLETVETALRAAETG 234 (372)
T ss_dssp CC-SEEEESCCC--SHHHHHHHHHHHTTT
T ss_pred Cc-CEEEECCCC--CHHHHHHHHHHHhcC
Confidence 65 699999996 555544455555433
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.78 E-value=0.00064 Score=66.38 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=49.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 419 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sV 419 (710)
.++++||+|+|||+++..++..+.+.+...+.+....... +.. ..+. ...|.............+.+.+. .+..+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r-~~~-~~i~--s~~g~~~~~~~~~~~~~~~~~~~-~~~dv 79 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSR-YHS-TMIV--SHSGNGVEAHVIERPEEMRKYIE-EDTRG 79 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CC-CEEC--C----CEECEEESSGGGGGGGCC-TTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccc-cCc-ccEE--ecCCCceeeEEECCHHHHHHHhc-CCCCE
Confidence 6889999999999998666554433333333332211000 110 0110 00111100000000111222221 24679
Q ss_pred EEEeccccCCHHHHHHHHhhHhC
Q 005186 420 VYLENVDKADVHVQNSLSKAIQT 442 (710)
Q Consensus 420 I~LDEIDKa~~~vqn~LLq~LE~ 442 (710)
|+||||..++++++..|.++.+.
T Consensus 80 viIDE~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 80 VFIDEVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp EEECCGGGSCTTHHHHHHHHHHT
T ss_pred EEEECcccCCHHHHHHHHHHHHC
Confidence 99999999988888888778775
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.57 E-value=0.0064 Score=61.45 Aligned_cols=98 Identities=12% Similarity=0.025 Sum_probs=54.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHh----
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK---- 414 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~---- 414 (710)
..++++||+|+|||+++..++..+.+.....+.+....... ....+. .. .|.............+.+.+..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r---~~~~i~-sr-lG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---SIRNIQ-SR-TGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG---GCSSCC-CC-CCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch---HHHHHH-Hh-cCCCccccccCCHHHHHHHHHHHhhC
Confidence 57888999999999999877776654444555543221000 000111 00 1211100001111345555554
Q ss_pred CCCeEEEEeccccCCHHHHHHHHhhHh
Q 005186 415 KPLSVVYLENVDKADVHVQNSLSKAIQ 441 (710)
Q Consensus 415 ~p~sVI~LDEIDKa~~~vqn~LLq~LE 441 (710)
.++.+|+|||+.-++.+....|..+.+
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~L~~ 114 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANILAE 114 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHHHHH
T ss_pred CCCCEEEEecCccCcHHHHHHHHHHHh
Confidence 346899999999998876666655444
No 107
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.51 E-value=0.0049 Score=59.77 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=21.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.|.||+|+|||+|++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999887
No 108
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.47 E-value=0.0059 Score=67.63 Aligned_cols=39 Identities=15% Similarity=-0.071 Sum_probs=30.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+...++|.||+|+|||+++..||..+-.....+..+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 457999999999999999999998876545555555555
No 109
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.35 E-value=0.036 Score=61.53 Aligned_cols=40 Identities=13% Similarity=-0.027 Sum_probs=33.1
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
++..++|+|++|+|||+++..||..+...+..+..+++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3579999999999999999999998876666666677764
No 110
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.27 E-value=0.0067 Score=61.54 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=31.4
Q ss_pred CCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 336 RRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 336 r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
|....++|.|++|||||++|-.+|..+...+..++.+|+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 3557899999999999999999998876555555555664
No 111
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.95 E-value=0.0048 Score=58.85 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=25.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEE
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 371 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~ 371 (710)
..++|+|++|+|||++|+.||+.+ +.+++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l---~~~~i~ 35 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT---KRILYD 35 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH---CCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 378999999999999999999988 455554
No 112
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.95 E-value=0.0047 Score=58.42 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=27.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
.++|+|++|+|||++|++|++.+ ..+++.++..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 68999999999999999999988 4567765543
No 113
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.78 E-value=0.045 Score=61.89 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=34.7
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHH
Q 005186 307 DWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 307 iGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
+|.+..++.|...+..... ....++.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~----------~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD----------LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT----------SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC----------CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5888888888888754311 1235899999999999999999996
No 114
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.78 E-value=0.012 Score=74.79 Aligned_cols=84 Identities=12% Similarity=0.137 Sum_probs=50.1
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccccccccc-cc------ccchhhHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQ-FR------GKTLADYVAWEL 412 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~-f~------G~t~~~~L~~al 412 (710)
.++++||+|||||.||++++...-..+.+.+.+++.... ..+. ...+|.+.. +. +...+..+....
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~------~~~~-~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a 1156 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL------DPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALA 1156 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC------CHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccch------HHHH-HHHhCCCHHHHhhccccchHHHHHHHHHHH
Confidence 699999999999999999887554335565666654310 0111 012333221 11 222334444445
Q ss_pred HhCCCeEEEEeccccCCH
Q 005186 413 LKKPLSVVYLENVDKADV 430 (710)
Q Consensus 413 ~~~p~sVI~LDEIDKa~~ 430 (710)
+....++||+|+|+.+-|
T Consensus 1157 r~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1157 RSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHTCCSEEEESCGGGCCC
T ss_pred HhcCCeEEEeCchHhcCc
Confidence 566789999999985443
No 115
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.73 E-value=0.0068 Score=59.04 Aligned_cols=30 Identities=27% Similarity=0.280 Sum_probs=25.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEE
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 371 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~ 371 (710)
..++|+||+|+|||++|++||+.+ +.+++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l---~~~~i~ 55 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL---NVPFID 55 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH---TCCEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc---CCCEEc
Confidence 389999999999999999999988 445543
No 116
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.71 E-value=0.0081 Score=56.09 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.|++|+|||++|+.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 117
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.69 E-value=0.018 Score=66.02 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=52.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHH-------
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL------- 412 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al------- 412 (710)
.+++.||+|||||+++.+|+..+.....+++.+--+.... ..+ ....|.. ..+ +...+
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa-----~~L--~e~~~~~----a~T----ih~ll~~~~~~~ 270 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAA-----RRL--GEVTGRT----AST----VHRLLGYGPQGF 270 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHH-----HHH--HHHHTSC----EEE----HHHHTTEETTEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHH-----HHh--Hhhhccc----HHH----HHHHHcCCcchh
Confidence 8999999999999999999987754444443321110000 000 0000000 000 11111
Q ss_pred -----HhCCCeEEEEeccccCCHHHHHHHHhhHhCC
Q 005186 413 -----LKKPLSVVYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 413 -----~~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
...+..+|++||+..++...+..|++++..|
T Consensus 271 ~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 271 RHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPG 306 (574)
T ss_dssp SCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSCTT
T ss_pred hhhhcccccCCEEEEcCccCCCHHHHHHHHHhCcCC
Confidence 1124679999999999999999999887643
No 118
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.62 E-value=0.0062 Score=59.74 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
.+.|+||+|+|||++.+.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 588999999999999999998774
No 119
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.56 E-value=0.01 Score=56.70 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=26.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEe
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICA 372 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~i 372 (710)
...++|.|++|+|||++|+.|++.+ +.+++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l---~~~~i~~ 36 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL---RLPLLSK 36 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH---TCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CCeEecH
Confidence 3579999999999999999999987 3445543
No 120
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.48 E-value=0.01 Score=56.40 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=22.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|+|++|+|||+++++|++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999988
No 121
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.47 E-value=0.036 Score=58.25 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
+...++|.||+|+|||++++.||..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999998774
No 122
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.44 E-value=0.012 Score=57.81 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=51.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
-..+++||.|+|||+.+..++....+.....+.+....... +.+ ..+. . ..|......+..-...+.+.+. .++.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r-~~~-~~i~-s-~~g~~~~a~~~~~~~~i~~~~~-~~~d 83 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNR-YSK-EDVV-S-HMGEKEQAVAIKNSREILKYFE-EDTE 83 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------CEEE-C-TTSCEEECEEESSSTHHHHHCC-TTCS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCcc-chH-HHHH-h-hcCCceeeEeeCCHHHHHHHHh-ccCC
Confidence 37889999999999888777766544444444443221010 111 1111 0 0121110000000123333332 2468
Q ss_pred EEEEeccccCCHHHHHHHHhhHhC
Q 005186 419 VVYLENVDKADVHVQNSLSKAIQT 442 (710)
Q Consensus 419 VI~LDEIDKa~~~vqn~LLq~LE~ 442 (710)
+|+|||+..++++....|..+.+.
T Consensus 84 vViIDEaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 84 VIAIDEVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp EEEECSGGGSCTHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 999999999988776666555543
No 123
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.42 E-value=0.009 Score=56.67 Aligned_cols=23 Identities=35% Similarity=0.271 Sum_probs=21.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.|++|+|||++|++||+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999988
No 124
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.41 E-value=0.011 Score=60.41 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=26.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
.+++.||+|+|||++|++||+.+ +..++..|-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~---~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET---GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC---CCeEEeccH
Confidence 58999999999999999999988 455665544
No 125
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.38 E-value=0.022 Score=56.30 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=25.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc-----CCC-cceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY-----GGK-ENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~-----gs~-~~fI~iD~s 375 (710)
...+++|++|+|||++|..++.... ..+ .++...++.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 4788999999999999988765442 223 455445554
No 126
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.37 E-value=0.01 Score=55.72 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=25.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEE
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 371 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~ 371 (710)
.+++|.|++|+|||++|+.||+.+ +.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l---g~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL---KLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 489999999999999999999988 455554
No 127
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.35 E-value=0.031 Score=58.18 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=28.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
...++|.||+|+|||++|+.|++.+ ...++.++..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D 67 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND 67 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Confidence 4589999999999999999999876 2345666653
No 128
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.26 E-value=0.025 Score=60.19 Aligned_cols=92 Identities=17% Similarity=0.133 Sum_probs=54.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 419 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sV 419 (710)
.+++.||+|+|||++.++|+..+.. ....|.++-.. ++.-. . ....+++-.+ -|.+....+..++..+| .+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~---e~~~~-~--~~~~i~~~~g-gg~~~r~~la~aL~~~p-~i 243 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTE---EIVFK-H--HKNYTQLFFG-GNITSADCLKSCLRMRP-DR 243 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSC---CCCCS-S--CSSEEEEECB-TTBCHHHHHHHHTTSCC-SE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCee---ccccc-c--chhEEEEEeC-CChhHHHHHHHHhhhCC-CE
Confidence 7999999999999999999987633 34455655331 11100 0 0111111101 13344456777777665 78
Q ss_pred EEEeccccCCHHHHHHHHhhHhCC
Q 005186 420 VYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 420 I~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
|+|||+-. .+++. +++.+.+|
T Consensus 244 lildE~~~--~e~~~-~l~~~~~g 264 (330)
T 2pt7_A 244 IILGELRS--SEAYD-FYNVLCSG 264 (330)
T ss_dssp EEECCCCS--THHHH-HHHHHHTT
T ss_pred EEEcCCCh--HHHHH-HHHHHhcC
Confidence 99999876 34555 44555544
No 129
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.25 E-value=0.038 Score=58.65 Aligned_cols=40 Identities=18% Similarity=0.039 Sum_probs=31.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
+...++|+||+|+|||+++..||..+-.....+..+|+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4568999999999999999999988764455666666663
No 130
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.25 E-value=0.011 Score=56.31 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=24.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 371 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~ 371 (710)
.++|.|++|+|||++|+.||+.+ +.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL---GVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCCEEe
Confidence 58999999999999999999987 445544
No 131
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.18 E-value=0.011 Score=55.66 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=21.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.|+||+|+|||++++.||..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999987
No 132
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.14 E-value=0.053 Score=58.55 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=24.1
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
+...++|+||+|+|||++++.||..+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 446999999999999999999998774
No 133
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.14 E-value=0.014 Score=55.74 Aligned_cols=24 Identities=13% Similarity=-0.003 Sum_probs=22.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.|++|+|||++|+.||+.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 134
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.11 E-value=0.016 Score=56.16 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=26.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEe
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICA 372 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~i 372 (710)
...++|.|++|+|||++|+.|++.+ +.+++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l---~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL---GIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---TCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCcEEeh
Confidence 3479999999999999999999987 3445443
No 135
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.09 E-value=0.015 Score=57.39 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=23.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...++|.|++|+|||++|+.||+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3479999999999999999999988
No 136
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.07 E-value=0.013 Score=54.86 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.|++|+|||++|+.||+.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 137
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.05 E-value=0.017 Score=55.96 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=22.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|+|++|+|||++|+.|++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 138
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.04 E-value=0.017 Score=54.87 Aligned_cols=35 Identities=20% Similarity=0.056 Sum_probs=27.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
.++|.|++|+|||++|+.|++.+-....++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 58999999999999999999988433333555543
No 139
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.03 E-value=0.21 Score=56.35 Aligned_cols=39 Identities=15% Similarity=-0.057 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+...++|+|++|+|||+++..||..+-..+.....+++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 456899999999999999999998775333445555554
No 140
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.00 E-value=0.017 Score=54.95 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=22.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.|++|+|||++|+.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999987
No 141
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.97 E-value=0.041 Score=55.80 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=28.9
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.+..++|.|++|+|||++|+.|++.+ ...++.+|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~ 67 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS 67 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence 34689999999999999999999987 23445555553
No 142
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.86 E-value=0.014 Score=55.42 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=22.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.|++|+|||++++.|++.+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999987
No 143
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.86 E-value=0.042 Score=70.86 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=49.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccccccc-------ccccccchhhHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDS-------VQFRGKTLADYVAWE 411 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~-------~~f~G~t~~~~L~~a 411 (710)
..++|+||+|||||+||.+++..........+.+++...-. .+. ....|.+ ....+......+...
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~------~l~-a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD------PIY-ARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC------HHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccC------HHH-HHHcCCCchhceeecCChHHHHHHHHHHH
Confidence 48999999999999999999887765555666666653100 000 0011100 000112233444455
Q ss_pred HHhCCCeEEEEeccccC
Q 005186 412 LLKKPLSVVYLENVDKA 428 (710)
Q Consensus 412 l~~~p~sVI~LDEIDKa 428 (710)
++.....+||||+|+-.
T Consensus 1501 vr~~~~~lVVIDsi~al 1517 (2050)
T 3cmu_A 1501 ARSGAVDVIVVDSVAAL 1517 (2050)
T ss_dssp HHHTCCSEEEESCGGGC
T ss_pred HhcCCCCEEEEcChhHh
Confidence 56667789999999733
No 144
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.84 E-value=0.019 Score=53.71 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=21.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.|++|+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 145
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.84 E-value=0.016 Score=53.74 Aligned_cols=22 Identities=27% Similarity=0.140 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.||+|+|||++|+.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 6899999999999999999 554
No 146
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.77 E-value=0.015 Score=55.54 Aligned_cols=34 Identities=24% Similarity=0.091 Sum_probs=27.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+.|.||+|+|||+++++|+..+ ....+.+|..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d 43 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSD 43 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc---CCCeEEEccc
Confidence 479999999999999999999863 3445666654
No 147
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.76 E-value=0.023 Score=55.22 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.6
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
...+.|.||+|+|||+++++|+..+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999885
No 148
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.76 E-value=0.062 Score=57.23 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=24.9
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
+...++|.||+|+|||++++.||..+-..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45699999999999999999999877533
No 149
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.73 E-value=0.017 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=22.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.|++|+|||++|+.||+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999877
No 150
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.71 E-value=0.031 Score=52.73 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=22.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|+||+|+|||++++.|+..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 489999999999999999999876
No 151
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.69 E-value=0.017 Score=55.47 Aligned_cols=24 Identities=29% Similarity=0.273 Sum_probs=22.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|+|++|+|||++++.||+.+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAEL 34 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999999984
No 152
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.69 E-value=0.018 Score=55.15 Aligned_cols=23 Identities=22% Similarity=0.086 Sum_probs=22.1
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.|++|+|||++|+.|++.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999987
No 153
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.63 E-value=0.037 Score=53.99 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=28.5
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
...+.+.|++|+|||++++.|+..+......++.+++.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 45899999999999999999999874323344444443
No 154
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.62 E-value=0.057 Score=60.72 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=24.3
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYG 364 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~g 364 (710)
+...++|+||+|+|||++++.|+..+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3458999999999999999999987753
No 155
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.59 E-value=0.016 Score=62.06 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=27.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+++.||+|+|||+||..||+.+ +..+|..|--
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF---PLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS---CEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC---CCcEEccccc
Confidence 479999999999999999999987 4456555443
No 156
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.58 E-value=0.022 Score=54.00 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=22.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.|++|+|||++|+.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 157
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.58 E-value=0.095 Score=55.21 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
+...++|+||+|+|||+++..||..+-.....+..+++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 446899999999999999999998775434445555554
No 158
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.54 E-value=0.053 Score=54.70 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=23.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
+..++|.||+|+|||++|+.|++.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999887
No 159
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.54 E-value=0.024 Score=55.47 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=21.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.||+|+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 160
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.51 E-value=0.033 Score=54.53 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.5
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
...+.+.||+|+|||+|+++|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999999884
No 161
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.51 E-value=0.052 Score=54.65 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=20.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++++||+|+|||.+|.+++..+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 48999999999999998888765
No 162
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.49 E-value=0.17 Score=58.20 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCeEEEEeccccCCHHHHHHHHhhHh
Q 005186 416 PLSVVYLENVDKADVHVQNSLSKAIQ 441 (710)
Q Consensus 416 p~sVI~LDEIDKa~~~vqn~LLq~LE 441 (710)
+..+|++||++.++......|++.+.
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~ 287 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALP 287 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCC
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCC
Confidence 45799999999999888888888764
No 163
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.46 E-value=0.03 Score=53.19 Aligned_cols=37 Identities=22% Similarity=0.097 Sum_probs=29.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+.|.|++|+|||++++.|++.+...+.+++.+|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 4788999999999999999999874334567766643
No 164
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.45 E-value=0.091 Score=55.05 Aligned_cols=39 Identities=15% Similarity=-0.101 Sum_probs=30.8
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
...+++.|++|+|||+++..||..+-........+|+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 458888999999999999999988754455566666663
No 165
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.40 E-value=0.027 Score=54.44 Aligned_cols=25 Identities=16% Similarity=-0.064 Sum_probs=22.7
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...++|.|++|+|||++|+.|++.+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999876
No 166
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.38 E-value=0.029 Score=56.01 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=22.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.|++|+|||++|+.||+.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999988
No 167
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.36 E-value=0.022 Score=56.42 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=22.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.|++|+|||++|+.||+.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999877
No 168
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.35 E-value=0.074 Score=58.78 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=32.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCC-CcceEEecCCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLCP 376 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs-~~~fI~iD~s~ 376 (710)
+...++|+|+.|+|||+++..||..+-.. +..+..+|+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 45689999999999999999999888654 56677778774
No 169
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.33 E-value=0.036 Score=52.99 Aligned_cols=37 Identities=27% Similarity=0.189 Sum_probs=28.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
...++|.|++|+|||++++.|++.+......++.+|.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 3588999999999999999999988533334444543
No 170
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.32 E-value=0.024 Score=55.89 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=22.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.|++|+|||++|+.||+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999988
No 171
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.31 E-value=0.024 Score=55.49 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=21.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.||+|+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 172
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.26 E-value=0.035 Score=53.90 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=22.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||+++++|+..+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999999887
No 173
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.26 E-value=0.026 Score=60.12 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=26.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
.++++||+|+|||++|+.||+.+ +..++.+|-
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l---~~~iis~Ds 38 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL---PCELISVDS 38 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEeccc
Confidence 78999999999999999999987 455555553
No 174
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.25 E-value=0.1 Score=51.73 Aligned_cols=36 Identities=17% Similarity=-0.024 Sum_probs=28.7
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
.+.+++++.+|.|||++|-.+|--..|.+..+..+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 458999999999999999999977766666655553
No 175
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.18 E-value=0.18 Score=55.44 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=53.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 417 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~ 417 (710)
.+.++++||+|+|||++.++|+..+......++.+.-.. ++...+ +. ...++. -.|..+...+..+++..|
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i---e~~~~~-~~-q~~v~~---~~g~~f~~~lr~~Lrq~p- 237 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI---EFDIDG-IG-QTQVNP---RVDMTFARGLRAILRQDP- 237 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC---CSCCSS-SE-EEECBG---GGTBCHHHHHHHHGGGCC-
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc---hhccCC-cc-eEEEcc---ccCcCHHHHHHHHhccCC-
Confidence 358999999999999999999998854434444432211 011000 00 000110 123344456677777776
Q ss_pred eEEEEeccccCCHHHHHHHHhhHhCC
Q 005186 418 SVVYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 418 sVI~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
.++++.||.. .......+++..+|
T Consensus 238 d~i~vgEiRd--~et~~~~l~a~~tG 261 (418)
T 1p9r_A 238 DVVMVGEIRD--LETAQIAVQASLTG 261 (418)
T ss_dssp SEEEESCCCS--HHHHHHHHHHHHTT
T ss_pred CeEEEcCcCC--HHHHHHHHHHHHhC
Confidence 6788888753 33333344555555
No 176
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.17 E-value=0.019 Score=56.62 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=22.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.||+|+|||++|+.||+.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999988
No 177
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.14 E-value=0.037 Score=56.42 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=28.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..++|+|++|+|||++|+.|++.+...+.+++.++..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 4799999999999999999999863234556655544
No 178
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.07 E-value=0.032 Score=54.71 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=21.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.|++|+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 179
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.06 E-value=0.029 Score=52.67 Aligned_cols=22 Identities=18% Similarity=-0.014 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~ 361 (710)
.++|.|++|+|||++|+.|++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 6899999999999999999983
No 180
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.06 E-value=0.031 Score=56.19 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=48.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 419 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sV 419 (710)
..+++||.|+|||+.+..++....+.....+.+....... |.+. .+. .. .|....-.+......+.+.+. .++.+
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R-~ge~-~i~-s~-~g~~~~a~~~~~~~~~~~~~~-~~~dv 104 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNR-YSEE-DVV-SH-NGLKVKAVPVSASKDIFKHIT-EEMDV 104 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC---------------------CCEEECSSGGGGGGGCC-SSCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCc-chHH-HHH-hh-cCCeeEEeecCCHHHHHHHHh-cCCCE
Confidence 5568999999999888777765555555555554331111 1111 111 00 011100000000011222221 24789
Q ss_pred EEEeccccCCHHHHHHHHhhHhCC
Q 005186 420 VYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 420 I~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
|+|||+.-++++....|..+.+.|
T Consensus 105 ViIDEaQF~~~~~V~~l~~l~~~~ 128 (214)
T 2j9r_A 105 IAIDEVQFFDGDIVEVVQVLANRG 128 (214)
T ss_dssp EEECCGGGSCTTHHHHHHHHHHTT
T ss_pred EEEECcccCCHHHHHHHHHHhhCC
Confidence 999999999877666655555443
No 181
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.02 E-value=0.035 Score=52.77 Aligned_cols=34 Identities=24% Similarity=0.097 Sum_probs=26.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
.+.|.|++|+|||++|+.|++.+-..+.+++..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4789999999999999999998732234455443
No 182
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.96 E-value=0.027 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=18.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.|++|+|||++|+.|++.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999999999887
No 183
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.75 E-value=0.044 Score=52.44 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=21.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.|.|++|+|||++++.||+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58899999999999999999988
No 184
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.70 E-value=0.039 Score=54.79 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=21.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.|++|+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 185
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.66 E-value=0.047 Score=57.91 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=27.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+++.||+|+|||+||..||+.+ +..+|..|--
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~ 44 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL---PVELISVDSA 44 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS---CEEEEECCTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhC---CCcEEecccc
Confidence 478899999999999999999987 4456555543
No 186
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.65 E-value=0.19 Score=55.46 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=32.2
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
+...++|.|+.|+|||+++..||..+-.....+..+|+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 3458888999999999999999998865556666677764
No 187
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.64 E-value=0.097 Score=57.81 Aligned_cols=39 Identities=18% Similarity=-0.014 Sum_probs=30.7
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
...++|+|++|+|||+++..||..+...+.....+++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 458999999999999999999987753334566677764
No 188
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.59 E-value=0.038 Score=53.49 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.|++|+|||++++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 589999999999999999998 5
No 189
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.58 E-value=0.058 Score=55.19 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 308 WQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 308 GQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
+...+++.+...|.....| ..+.|.|++|+|||+++++||+.+
T Consensus 30 ~~~~~l~~~~~~i~~~l~g------------~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNG------------RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTT------------CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCC------------CEEEEECCCCCCHHHHHHHHHHhc
Confidence 4445667766666543321 279999999999999999999988
No 190
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.56 E-value=0.045 Score=52.74 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=22.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.|++|+|||++|+.|++.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999987
No 191
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.53 E-value=0.19 Score=54.16 Aligned_cols=37 Identities=14% Similarity=-0.002 Sum_probs=29.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+++.||+|+|||+|+..++..+-......+++|..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 4899999999999999999998765444566677665
No 192
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.48 E-value=0.037 Score=53.90 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=22.6
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...++|+||+|+|||++++.|++.+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3479999999999999999999876
No 193
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.47 E-value=0.072 Score=56.06 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=27.5
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
...+.|.||+|+|||++++.||..+-.....+...+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 358999999999999999999988754434433333
No 194
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.46 E-value=0.13 Score=54.62 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=24.2
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
.+..+.+.||+|+|||++++.|+..+-
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999998873
No 195
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.35 E-value=0.053 Score=52.15 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=25.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICA 372 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~i 372 (710)
..+.|.|++|+|||++++.|++.+ + +.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l-~-g~~~~~~ 36 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI-P-ANTIKYL 36 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS-C-GGGEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH-C-CCceEEE
Confidence 379999999999999999999976 1 2345544
No 196
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.34 E-value=0.053 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=22.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||++++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999877
No 197
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.30 E-value=0.051 Score=52.63 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=22.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.|++|+|||++|+.|++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 198
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.29 E-value=0.04 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=21.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.|+||+|+|||+|+++|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 79999999999999999999865
No 199
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.26 E-value=0.056 Score=51.58 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=24.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
-+.|.|++|+|||++++.|++.+-..+.+++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4789999999999999999998743233444
No 200
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.21 E-value=0.13 Score=53.68 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=24.0
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
+...+.+.||+|+|||++|+.|++.+-
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346899999999999999999999883
No 201
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.18 E-value=0.059 Score=52.79 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=28.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc-CCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY-GGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~-gs~~~fI~iD~s 375 (710)
..++|.|++|+|||++++.|++.+. ..+.+++.+|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 4789999999999999999999874 222346666643
No 202
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.18 E-value=0.06 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=22.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.|++|+|||++|+.||+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999987
No 203
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.15 E-value=0.056 Score=52.29 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.|++|+|||++|+.|++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 204
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.14 E-value=0.068 Score=57.33 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=28.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
.+++.||+|+|||+||..++..+.......+.++..
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 799999999999999999986654444556666654
No 205
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.14 E-value=0.053 Score=58.12 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=22.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+++.||+|+|||++|+.||+.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 78999999999999999999987
No 206
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.14 E-value=0.046 Score=58.10 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=25.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
.+++.||+|+|||+||..||+.+ +..+|..|
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~---~~~iis~D 35 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL---NGEVISGD 35 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT---TEEEEECC
T ss_pred EEEEECCCcCCHHHHHHHHHHhC---ccceeecC
Confidence 68899999999999999999977 34455444
No 207
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.13 E-value=0.068 Score=53.01 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=21.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|.||||+||++.|+.||+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999987
No 208
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.10 E-value=0.055 Score=53.07 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|+||+|+|||++++.|++.+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 378999999999999999999865
No 209
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.06 E-value=0.052 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||+++++|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 378999999999999999999874
No 210
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.99 E-value=0.058 Score=54.16 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=22.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|+||+|+|||+++++|++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999877
No 211
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.97 E-value=0.068 Score=58.62 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=26.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
..+++.||+|+|||+||..||+.+ +..+|..|-
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~---~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF---NGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH---TEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHC---CCeEeecCc
Confidence 378999999999999999999988 344555443
No 212
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.97 E-value=0.2 Score=52.31 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=30.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcC-CCcceEEecCCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYG-GKENFICADLCP 376 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~g-s~~~fI~iD~s~ 376 (710)
...++|+||+|+|||+++..||..+.. .+..+..+++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 458999999999999999999987752 344555566653
No 213
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.92 E-value=0.053 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.|+||+|+|||+++++|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 68899999999999999999744
No 214
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.81 E-value=0.11 Score=55.97 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=25.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEE
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 371 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~ 371 (710)
..++|.||+|+|||+++++||..+ ..+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l---~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII---NEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---HHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh---CCCeee
Confidence 479999999999999999999988 345543
No 215
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.74 E-value=0.089 Score=52.74 Aligned_cols=33 Identities=15% Similarity=0.004 Sum_probs=26.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
.-.++|.||||+||++.|+.||+.+ .+..++.+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~-----g~~hIstG 61 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSG 61 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH-----CCEEECHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-----CCceEcHH
Confidence 3478889999999999999999987 34555444
No 216
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.71 E-value=0.052 Score=52.27 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=22.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|+||+|+|||++++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 379999999999999999999876
No 217
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.65 E-value=0.057 Score=52.35 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe 360 (710)
.+.|.||+|+|||++++.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999997
No 218
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.49 E-value=0.083 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=20.8
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe 360 (710)
..+.|.|++|+|||++++.|++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999998
No 219
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.45 E-value=0.056 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=21.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.|.||+|+|||+++++|+..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999876
No 220
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.43 E-value=0.2 Score=53.94 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=29.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+++.|++|+|||++|..++..+.....+.+.+|..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3799999999999999999887665444567777764
No 221
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.40 E-value=0.076 Score=51.65 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=26.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
..+++.||+|+|||++++.|+..+.......+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 378999999999999999999665433334444443
No 222
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.37 E-value=0.089 Score=51.55 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.8
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...+.++|++|+|||++|+.|++.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999976
No 223
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.37 E-value=0.082 Score=50.64 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.9
Q ss_pred CeEEEEecCCCCchhHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
...+.+.|++|+|||++|+.||+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999985
No 224
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.35 E-value=0.068 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=21.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.|+||+|+|||+|++.|+..+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999999876
No 225
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.32 E-value=0.084 Score=51.28 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.9
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...+.+.||+|+|||++++.|+..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999987
No 226
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.29 E-value=0.1 Score=52.67 Aligned_cols=25 Identities=12% Similarity=0.385 Sum_probs=22.9
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...+.+.|++|+|||++|+.|++.+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999976
No 227
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.27 E-value=0.22 Score=53.51 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=52.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCC--CCcccccccc-cccc---ccccchhhHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP--PKFYHQVVGG-DSVQ---FRGKTLADYVAWELL 413 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~--~sl~~~~~~G-~~~~---f~G~t~~~~L~~al~ 413 (710)
.+++.||+|+|||+++++|+..+-. ....|.++-.. ++... .... +++- .+.. +.+.+....+..+++
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~~~---e~~~~~~~~~v--~~v~~q~~~~~~~~~~t~~~~i~~~l~ 250 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDVP---ELFLPDHPNHV--HLFYPSEAKEEENAPVTAATLLRSCLR 250 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESSS---CCCCTTCSSEE--EEECC----------CCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECCcc---ccCccccCCEE--EEeecCccccccccccCHHHHHHHHHh
Confidence 7999999999999999999986632 34456665321 11110 0000 1111 0000 112344455666666
Q ss_pred hCCCeEEEEeccccCCHHHHHHHHhhHhCC
Q 005186 414 KKPLSVVYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 414 ~~p~sVI~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
..| .+++++|+..+ .+.. +++.+.+|
T Consensus 251 ~~p-d~~l~~e~r~~--~~~~-~l~~l~~g 276 (361)
T 2gza_A 251 MKP-TRILLAELRGG--EAYD-FINVAASG 276 (361)
T ss_dssp SCC-SEEEESCCCST--HHHH-HHHHHHTT
T ss_pred cCC-CEEEEcCchHH--HHHH-HHHHHhcC
Confidence 555 57889998753 3444 56777776
No 228
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.20 E-value=0.095 Score=53.17 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=23.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...+.+.||+|+|||++|+.||+.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999988
No 229
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.12 E-value=0.23 Score=53.68 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=27.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
.+++.||+|+|||++|..++..+.....+++.++..
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 788899999999999998887664334566666665
No 230
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=92.07 E-value=0.59 Score=40.87 Aligned_cols=67 Identities=12% Similarity=0.095 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHH
Q 005186 607 FNFDALAEKILKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQE 674 (710)
Q Consensus 607 LD~d~Laeiil~~L~~~~~~~~g-~~i~LeId~eale~La~~~~~~~-GaR~le~~IE~vl~~~L~el~~ 674 (710)
++.++-.+|..+.|-.+.-+..| ..-.+.|+++|+..|+.. |..+ |.|.|++.|.++......++..
T Consensus 3 Yt~~EK~~IAk~~LiPkql~~~GL~~~~~~i~d~al~~iI~~-YTREaGVRnLer~i~~i~RK~a~~i~~ 71 (94)
T 1qzm_A 3 YTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRY-YTREAGVRGLEREISKLCRKAVKQLLL 71 (94)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHTTCCTTTEEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhccHHHHHHhCCChhhceECHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHHHH
Confidence 56677677776666544333334 445799999999999998 6676 9999999999999998888764
No 231
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.94 E-value=0.43 Score=53.74 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=53.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC-CCCCCCCCCCCc--cccccccccccccccchhhHHHHHHHhCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPPKF--YHQVVGGDSVQFRGKTLADYVAWELLKKP 416 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s-~~~~e~~~~~sl--~~~~~~G~~~~f~G~t~~~~L~~al~~~p 416 (710)
.++++||+|+|||++.++|+..+. .....+.++-. +.. ....+.+ .....++. .+.++.+.+..+++..|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~-~~~giitied~~E~~--~~~~~~v~~~~r~~~~~----~~~~~~~~l~~~LR~~P 334 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIP-PDAKVVSIEDTREIK--LYHENWIAEVTRTGMGE----GEIDMYDLLRAALRQRP 334 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSC-TTCCEEEEESSCCCC--CCCSSEEEEECBCCSSS----CCBCHHHHHHTTGGGCC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC-CCCCEEEEcCccccc--CCCCCeEEEEeeccccc----CCcCHHHHHHHhhccCC
Confidence 699999999999999999998763 34455665433 111 0011100 00000110 11233445666677776
Q ss_pred CeEEEEeccccCCHHHHHHHHhhHhCCc
Q 005186 417 LSVVYLENVDKADVHVQNSLSKAIQTGK 444 (710)
Q Consensus 417 ~sVI~LDEIDKa~~~vqn~LLq~LE~G~ 444 (710)
.++++.|+--. ++. .+++++.+|.
T Consensus 335 -D~iivgEir~~--E~~-~~l~a~~tGh 358 (511)
T 2oap_1 335 -DYIIVGEVRGR--EAQ-TLFQAMSTGH 358 (511)
T ss_dssp -SEEEESCCCST--HHH-HHHHHHHTTC
T ss_pred -CeEEeCCcCHH--HHH-HHHHhhcCCC
Confidence 56778998653 344 4577777663
No 232
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.78 E-value=0.13 Score=48.84 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=22.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||.|+|||+|.++|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 489999999999999999999987
No 233
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.66 E-value=0.39 Score=55.40 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=39.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCeE
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 419 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~sV 419 (710)
..|+.||||||||+++-.+...+...+..++.+--+ ...++.+.+.+......+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T--------------------------N~AvD~i~erL~~~~~~i 260 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS--------------------------NIAVDNLVERLALCKQRI 260 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS--------------------------HHHHHHHHHHHHHTTCCE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc--------------------------hHHHHHHHHHHHhcCCce
Confidence 689999999999986554444443333333222111 012355666666655666
Q ss_pred EEEeccccCCHHHHH
Q 005186 420 VYLENVDKADVHVQN 434 (710)
Q Consensus 420 I~LDEIDKa~~~vqn 434 (710)
+-+-.-.++.+.++.
T Consensus 261 lRlG~~~r~~~~~~~ 275 (646)
T 4b3f_X 261 LRLGHPARLLESIQQ 275 (646)
T ss_dssp EECSCCSSCCHHHHT
T ss_pred EEecchhhhhhhhhh
Confidence 666666666655543
No 234
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.57 E-value=0.091 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
-.+.|.||+|+|||+|+++|+..+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 389999999999999999999876
No 235
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.54 E-value=0.058 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.|.|++|+|||++++.|++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999988
No 236
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.21 E-value=0.16 Score=50.08 Aligned_cols=37 Identities=16% Similarity=-0.111 Sum_probs=27.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+++.||+|+|||++|..++..+.....+.+.++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3899999999999999988876654334455555544
No 237
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.20 E-value=0.1 Score=51.99 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=25.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..++|.||+|+|||++|..|++..+ .+|..|.-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~----~iIsdDs~ 67 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH----RLIADDRV 67 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC----EEEESSEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC----eEEecchh
Confidence 3689999999999999999998652 55554433
No 238
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.12 E-value=0.31 Score=51.28 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.9
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
+...+.+.||+|+|||+|++.|+..+-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 345899999999999999999999874
No 239
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.12 E-value=0.15 Score=51.67 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=22.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||++++.||+.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999999877
No 240
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.01 E-value=0.36 Score=51.45 Aligned_cols=38 Identities=16% Similarity=0.038 Sum_probs=30.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
...+.|+|++|+|||+++..|+..+...+..+..+++.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 45899999999999999999998886555555555554
No 241
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.91 E-value=0.13 Score=50.18 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.|++|+|||++++.|++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999999977
No 242
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.90 E-value=0.14 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=20.2
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe 360 (710)
..+.|.||+|+|||+|+++|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3899999999999999999984
No 243
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.83 E-value=0.18 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||+|++.|+..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999754
No 244
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.73 E-value=0.28 Score=53.25 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=22.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|+||+|+|||+++++|+..+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 389999999999999999999876
No 245
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.69 E-value=0.12 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
+++|.||+|+||++|++.|.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999987765
No 246
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.68 E-value=0.5 Score=47.97 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=45.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
...+++||.|+|||+.+..++....+.+...+.+.-..... |. ..+.. . .|....-.+-.....+.+.+ .++.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~R-yg--~~i~s-r-~G~~~~a~~i~~~~di~~~~--~~~d 92 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTR-YS--SSFCT-H-DRNTMEALPACLLRDVAQEA--LGVA 92 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCC-C---------------CEEEEESSGGGGHHHH--TTCS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCcc-ch--HHHHh-h-cCCeeEEEecCCHHHHHHHh--ccCC
Confidence 37788999999999665544443434444444443221111 22 11210 0 01111100000012233333 4578
Q ss_pred EEEEeccccCCHHHHHHHHhhHhC
Q 005186 419 VVYLENVDKADVHVQNSLSKAIQT 442 (710)
Q Consensus 419 VI~LDEIDKa~~~vqn~LLq~LE~ 442 (710)
+|+|||+.-+.. ...|.+.+++
T Consensus 93 vViIDEaQF~~~--v~el~~~l~~ 114 (234)
T 2orv_A 93 VIGIDEGQFFPD--IVEFCEAMAN 114 (234)
T ss_dssp EEEESSGGGCTT--HHHHHHHHHH
T ss_pred EEEEEchhhhhh--HHHHHHHHHh
Confidence 999999999974 4455566643
No 247
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.65 E-value=0.19 Score=50.03 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=22.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.|++|+|||++++.||+.+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999977
No 248
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.64 E-value=0.17 Score=50.79 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=22.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||++++.|+..+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999877
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.61 E-value=0.14 Score=50.61 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=21.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||+|+++|++..
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 378999999999999999999864
No 250
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.61 E-value=0.12 Score=51.13 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=21.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.|+||+|+|||+|+++|+..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999999865
No 251
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.51 E-value=0.5 Score=61.13 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=50.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCcccccccccccc-c------cccchhhHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQ-F------RGKTLADYVAWE 411 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~-f------~G~t~~~~L~~a 411 (710)
..++|+||+|+|||+||.+++........+.+.+++..... .+. ....|.+.. + .+.. ...+.+.
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~------~L~-a~~~G~dl~~l~~~~pd~~e~-~~~i~~~ 1153 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD------PIY-ARKLGVDIDNLLCSQPDTGEQ-ALEICDA 1153 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC------HHH-HHHTTCCTTTCEEECCSSHHH-HHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHH------HHH-HHHcCCChhHheeecCcchHH-HHHHHHH
Confidence 48999999999999999998876666667777777774211 111 011111100 0 1111 1234444
Q ss_pred HH-hCCCeEEEEeccccCCH
Q 005186 412 LL-KKPLSVVYLENVDKADV 430 (710)
Q Consensus 412 l~-~~p~sVI~LDEIDKa~~ 430 (710)
+. .....+|+||++..+.+
T Consensus 1154 l~~~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1154 LARSGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HHHHTCCSEEEESCGGGCCC
T ss_pred HHHhCCCCEEEECCcccccc
Confidence 43 35578999999998844
No 252
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.51 E-value=0.24 Score=51.78 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.3
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
...+.|.||+|+|||++++.|+..+-
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999998873
No 253
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.49 E-value=0.22 Score=48.97 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=28.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH-cC-----CCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII-YG-----GKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L-~g-----s~~~fI~iD~s 375 (710)
..++|+||+|+|||++++.|+... .. .....+.++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 389999999999999999999753 21 13456666655
No 254
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.45 E-value=0.28 Score=49.06 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=23.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..+.|.||+|+|||++++.|++.+-
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999884
No 255
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.41 E-value=0.17 Score=47.78 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYG 364 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~g 364 (710)
+..+|+||+|+|||+++++|+-.+++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 48899999999999999999988754
No 256
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.33 E-value=0.16 Score=49.24 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
+...+.+.|++|+|||++|+.|++.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34588999999999999999999754
No 257
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.27 E-value=0.15 Score=50.91 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=22.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||+|.++|+..+
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 489999999999999999999876
No 258
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.23 E-value=0.18 Score=48.82 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=27.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+++.||+|+|||++++.|+. .. ..+.+.++..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~~--~~~v~~i~~~ 54 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-LS--GKKVAYVDTE 54 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-HH--CSEEEEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHH-Hc--CCcEEEEECC
Confidence 3899999999999999999998 32 4556666654
No 259
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.22 E-value=0.71 Score=48.05 Aligned_cols=38 Identities=18% Similarity=0.072 Sum_probs=29.7
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
...+.++|++|+|||+++..||..+-.....+..+|+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 34788889999999999999998775444555666665
No 260
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.16 E-value=0.21 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...+.|.|++|+|||++|+.|++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999995
No 261
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=90.08 E-value=0.26 Score=48.77 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=48.7
Q ss_pred EEEEecCCCCchh-HHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCCe
Q 005186 340 WFNFTGPDLCGKR-KIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 418 (710)
Q Consensus 340 ~lLf~GP~GvGKT-~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~s 418 (710)
-++++||.|+||| +|.+++.+..... ...+.+.-...+. |. ..+.. . .|......-......+.+..+ +..
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~-~kvl~~kp~~D~R-~~--~~i~S-~-~g~~~~A~~~~~~~d~~~~~~--~~D 93 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIKYAKDTR-YS--SSFCT-H-DRNTMEALPACLLRDVAQEAL--GVA 93 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEETTCCC-GG--GSCCH-H-HHHHSEEEEESSGGGGHHHHH--TCS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEccccCcc-ch--hhhhh-c-cCCcccceecCCHHHHHHhcc--CCC
Confidence 6778999999999 8999999887654 3444443221111 22 11110 0 000000000000122333333 357
Q ss_pred EEEEeccccCCHHHHHHHHhhHhCC
Q 005186 419 VVYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 419 VI~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
||+|||+.-+ ++....+..+.+.|
T Consensus 94 vIlIDEaQFf-k~~ve~~~~L~~~g 117 (195)
T 1w4r_A 94 VIGIDEGQFF-PDIVEFCEAMANAG 117 (195)
T ss_dssp EEEESSGGGC-TTHHHHHHHHHHTT
T ss_pred EEEEEchhhh-HHHHHHHHHHHHCC
Confidence 9999999999 66444444434433
No 262
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.07 E-value=0.2 Score=47.54 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=18.0
Q ss_pred eEEEEecCCCCchhHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIAL 358 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraL 358 (710)
-.+.|+||+|+|||++++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999963
No 263
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.84 E-value=0.17 Score=51.92 Aligned_cols=24 Identities=17% Similarity=-0.081 Sum_probs=21.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|.|++|+|||++|+.|++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999999853
No 264
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.84 E-value=0.11 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=15.7
Q ss_pred eEEEEecCCCCchhHHHHHHH-HHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALA-EII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLA-e~L 362 (710)
..+.|+||+|+|||+++++|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999999 765
No 265
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.63 E-value=0.23 Score=57.36 Aligned_cols=36 Identities=22% Similarity=0.129 Sum_probs=30.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
..++|+|.+|+|||++|++|++.+...+.+++.+|.
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 479999999999999999999998654556777764
No 266
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.50 E-value=0.63 Score=45.06 Aligned_cols=25 Identities=24% Similarity=0.107 Sum_probs=22.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..++|.|++|+|||+++..|+..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999998774
No 267
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.46 E-value=0.43 Score=47.63 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=33.1
Q ss_pred CCCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 336 RRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 336 r~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
+....+++.|..|+|||+++..||..+. .+.....+|+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 4557999999999999999999999887 666666677664
No 268
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=89.42 E-value=0.26 Score=55.56 Aligned_cols=45 Identities=18% Similarity=0.329 Sum_probs=34.5
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHH
Q 005186 305 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 305 ~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
.++|.+..+..|...+.... .....+.++||.|+|||+||+.+++
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLK-----------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTST-----------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred eecccHHHHHHHHHHHhccc-----------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 48899988888877764210 1234899999999999999998863
No 269
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.38 E-value=0.17 Score=52.73 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=25.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
..+.+.||+|+|||++|+.|++.+-.....+..+++..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~ 43 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 43 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch
Confidence 37999999999999999999997621122345566664
No 270
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.36 E-value=0.13 Score=56.19 Aligned_cols=25 Identities=12% Similarity=-0.154 Sum_probs=22.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...++|+|++|+|||++|+.|++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999865
No 271
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.92 E-value=0.34 Score=46.68 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=23.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYG 364 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~g 364 (710)
..+.|.|++|+|||+++..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37999999999999999999988753
No 272
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.67 E-value=0.35 Score=48.04 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
.-+.|.|++|+|||++++.|++.+-..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 378899999999999999999988533
No 273
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.56 E-value=0.37 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..+++.||+|+|||+|++.|+..+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3899999999999999999997654
No 274
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=88.35 E-value=0.79 Score=47.73 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=30.4
Q ss_pred eEEEEecC-CCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 339 IWFNFTGP-DLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 339 ~~lLf~GP-~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
..++|+|+ +|+|||++|..||..+-..+..++.||+..
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 37888886 799999999999988765566777788774
No 275
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.10 E-value=0.38 Score=49.43 Aligned_cols=35 Identities=14% Similarity=-0.164 Sum_probs=26.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCC-CcceEEec
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGG-KENFICAD 373 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs-~~~fI~iD 373 (710)
..+++.||+|+|||+|++.||..+... ..+++.++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 389999999999999999999877532 22444443
No 276
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.80 E-value=0.33 Score=51.15 Aligned_cols=24 Identities=25% Similarity=0.438 Sum_probs=22.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|+||+|+|||+|+++|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 389999999999999999999987
No 277
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.79 E-value=0.35 Score=55.28 Aligned_cols=38 Identities=21% Similarity=-0.015 Sum_probs=29.6
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCC-cceEEecCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGK-ENFICADLC 375 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~-~~fI~iD~s 375 (710)
...++|.|++|+|||++|++|++.+...+ .+++.+|..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 35799999999999999999999885212 456666644
No 278
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.75 E-value=0.34 Score=47.50 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=25.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
..+.+.|+.|+|||++|+.||+.| +.+|+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l---g~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY---NIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT---TCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh---CcCEE
Confidence 379999999999999999999998 45554
No 279
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.59 E-value=0.81 Score=46.93 Aligned_cols=38 Identities=21% Similarity=-0.006 Sum_probs=30.5
Q ss_pred eEEEEecC-CCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 339 IWFNFTGP-DLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 339 ~~lLf~GP-~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
..++|+|+ +|+|||++|..||..+-..+...+.+|+..
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 37778776 799999999999988865566777888874
No 280
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.54 E-value=0.28 Score=48.52 Aligned_cols=22 Identities=32% Similarity=0.190 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~ 361 (710)
.+.+.||+|+|||+|.++|+-.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7889999999999999999976
No 281
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.53 E-value=0.41 Score=51.46 Aligned_cols=38 Identities=18% Similarity=0.006 Sum_probs=31.5
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+++++||+|+|||++++.|+..+...+..++.+|-.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45899999999999999999988776666677777765
No 282
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.45 E-value=0.3 Score=49.40 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.+.||+|+|||+|.++|+-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999765
No 283
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.31 E-value=0.4 Score=46.88 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=24.3
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceE
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFI 370 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI 370 (710)
+.|.|++|+|||+.++.|++.|-..+.+++
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 578999999999999999999854444443
No 284
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=87.26 E-value=1.1 Score=46.29 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEec-CCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 310 DEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTG-PDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 310 deAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~G-P~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.++++.|...|.....+ ++.-.++|+| -.|+|||++|..||..+-..+...+-||+..
T Consensus 73 ~Ea~r~lrt~l~~~~~~---------~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 131 (286)
T 3la6_A 73 IEAIRSLRTSLHFAMMQ---------AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDM 131 (286)
T ss_dssp HHHHHHHHHHHHHHSTT---------TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred HHHHHHHHHHHhhhccC---------CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccC
Confidence 35666666666543321 1122555555 5799999999999998876667788888874
No 285
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.24 E-value=0.28 Score=49.33 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=21.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
-.+.+.||+|+|||+|.++|+-.+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 389999999999999999998654
No 286
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.23 E-value=0.75 Score=58.75 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=49.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccc-------cccccchhhHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSV-------QFRGKTLADYVAWE 411 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~-------~f~G~t~~~~L~~a 411 (710)
..++|.||+|+|||+||..+|..+.....+++.+++-.... .+. ....|.+. ......+...+...
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~------ql~-A~~lGvd~~~L~i~~~~~leei~~~l~~l 805 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD------PIY-ARKLGVDIDNLLCSQPDTGEQALEICDAL 805 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC------HHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHH------HHH-HHHcCCChhheEEecCCcHHHHHHHHHHH
Confidence 48999999999999999999887754445666666653110 000 01112110 00111122233333
Q ss_pred HHhCCCeEEEEeccccCC
Q 005186 412 LLKKPLSVVYLENVDKAD 429 (710)
Q Consensus 412 l~~~p~sVI~LDEIDKa~ 429 (710)
+++....+|+||.|.-+.
T Consensus 806 v~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 806 ARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp HHHTCCSEEEESCSTTCC
T ss_pred HHccCCCEEEEechhhhc
Confidence 445667899999999876
No 287
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.18 E-value=0.44 Score=44.39 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=24.8
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
++..+++||+|+|||.+..||.-.++|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~g~ 50 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLYWP 50 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3578999999999999999999888764
No 288
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=86.96 E-value=0.8 Score=51.62 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=23.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..+.|.|.+|+|||++|++||+.|.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999994
No 289
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.91 E-value=0.26 Score=49.22 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.||+|+|||+|.++|+-.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998654
No 290
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=86.66 E-value=0.26 Score=47.39 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=22.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
.+.+.|++|+|||+|++.|+..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999999874
No 291
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.57 E-value=0.67 Score=50.86 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 310 DEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 310 deAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++...|.+++..... ..+.+.|.||+|+|||+|.++|+..+
T Consensus 52 ~~~~~~i~~~L~~~~~-----------~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 52 QLTNSAISDALKEIDS-----------SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HHHHHHHHHHHHHHHH-----------CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cccchhhhhhhhhccc-----------CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455666666665543 23589999999999999999998643
No 292
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.46 E-value=0.37 Score=48.00 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=22.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.|++|+|||++++.|++.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999987
No 293
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.44 E-value=0.49 Score=47.55 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=49.1
Q ss_pred eEEEEecCCCCchhH-HHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccccccccccccchhhHHHHHHHhCCC
Q 005186 339 IWFNFTGPDLCGKRK-IAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 417 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~-LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~G~~~~f~G~t~~~~L~~al~~~p~ 417 (710)
...+++||-|+|||+ |.+.+.+..... ...+.+.....+. |.+. .+.. -.|....-.--.....+.+.+ ..+.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g-~kvli~kp~~D~R-~~~~-~I~S--r~G~~~~a~~v~~~~di~~~i-~~~~ 102 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAK-QKVVVFKPAIDDR-YHKE-KVVS--HNGNAIEAINISKASEIMTHD-LTNV 102 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEEC-------------C--BTTBCCEEEEESSGGGGGGSC-CTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC-CceEEEEeccCCc-chhh-hHHH--hcCCceeeEEeCCHHHHHHHH-hcCC
Confidence 367889999999998 556665555433 3333332221011 1110 1110 001100000000001222222 2356
Q ss_pred eEEEEeccccCCHHHHHHHHhhHhCC
Q 005186 418 SVVYLENVDKADVHVQNSLSKAIQTG 443 (710)
Q Consensus 418 sVI~LDEIDKa~~~vqn~LLq~LE~G 443 (710)
.+|+|||+.-+++++...|.++.+.|
T Consensus 103 dvV~IDEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 103 DVIGIDEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp SEEEECCGGGSCTHHHHHHHHHHHTT
T ss_pred CEEEEechhcCCHHHHHHHHHHHHCC
Confidence 79999999999998888887777644
No 294
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=86.36 E-value=0.38 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=22.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+-|.|++|+||+++|+.|++.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999987
No 295
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.31 E-value=0.6 Score=43.93 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
....++++|++|+|||+|..+|...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998764
No 296
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.25 E-value=0.34 Score=49.63 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=21.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.+.||+|+|||+|.++|+-.+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 388999999999999999998654
No 297
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.25 E-value=0.35 Score=48.70 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=19.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
.-+.|.|++|+|||++++.|++.+-
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999883
No 298
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.12 E-value=0.35 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.+.||+|+|||+|.++|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999998765
No 299
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.06 E-value=0.17 Score=51.18 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=23.2
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...-+.|.|++|+|||++|+.|++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34588999999999999999999877
No 300
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.97 E-value=0.61 Score=48.97 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=28.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCC------CcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGG------KENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs------~~~fI~iD~s 375 (710)
..++++||+|+|||.+|..|+...... ....++++..
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 389999999999999999998765321 3456666665
No 301
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.91 E-value=0.38 Score=48.80 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.7
Q ss_pred EEEEecCCCCchhHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~ 361 (710)
.+.+.||+|+|||+|.++|+-.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8899999999999999999975
No 302
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.87 E-value=1.6 Score=49.83 Aligned_cols=38 Identities=18% Similarity=-0.002 Sum_probs=29.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCC----CcceEEecCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGG----KENFICADLCP 376 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs----~~~fI~iD~s~ 376 (710)
.++|+.|.+|+|||.+.+.|...+... +..|+.+|...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 489999999999999999876655322 34588888873
No 303
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.85 E-value=0.32 Score=50.33 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=21.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.||+|+|||+|.++|+-.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 89999999999999999999755
No 304
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.76 E-value=0.44 Score=49.04 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=21.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
.+.++||+|+|||+|.++|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998764
No 305
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.76 E-value=0.73 Score=48.26 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=27.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+++.|+||+|||.+|..+|..+...+.+.+.+.+-
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 4899999999999999999987654333555555443
No 306
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.69 E-value=0.49 Score=45.59 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=22.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..+.|.|++|+|||++++.|...+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 3789999999999999999998763
No 307
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=85.59 E-value=0.34 Score=49.35 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=21.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.||+|+|||+|.++|+-.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 88999999999999999998655
No 308
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.52 E-value=0.35 Score=48.77 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.||+|+|||+|.++|+-.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 88999999999999999998654
No 309
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.48 E-value=0.46 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=21.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
..+.+.||+|+|||+|.++|+-.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999975
No 310
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.44 E-value=0.38 Score=51.82 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
-.+.|.||+|+|||+|.++||-.+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 388999999999999999999765
No 311
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.36 E-value=0.42 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
-.+.+.||+|+|||+|.++|+-.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999765
No 312
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=85.33 E-value=0.52 Score=53.19 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=23.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...++|+|.+|+|||++|+.||+.+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999987
No 313
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.31 E-value=0.36 Score=49.65 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
-.+.+.||+|+|||+|.++|+-.+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 388999999999999999998654
No 314
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.29 E-value=0.4 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=22.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.++||+|+|||+|+++|+..+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 315
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.23 E-value=0.41 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=21.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||+|.++|+-.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 389999999999999999998654
No 316
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.17 E-value=0.39 Score=54.71 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=23.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..+.|+|++|+|||+++++||..+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4899999999999999999999885
No 317
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=85.13 E-value=0.62 Score=51.53 Aligned_cols=36 Identities=14% Similarity=-0.061 Sum_probs=27.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEec
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 373 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD 373 (710)
...++|+|.+|+|||++++.|++.+.-...+...++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 458999999999999999999998742223334433
No 318
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=85.12 E-value=1.4 Score=46.68 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=23.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
...+.|.|++|+|||+++.+|+..+.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35889999999999999999998774
No 319
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=84.97 E-value=0.84 Score=48.44 Aligned_cols=37 Identities=16% Similarity=0.003 Sum_probs=28.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcC------CCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYG------GKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~g------s~~~fI~iD~s 375 (710)
..++++||+|+|||.+|..||....- .....++++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 48899999999999999999876321 24566666665
No 320
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=84.91 E-value=0.59 Score=50.14 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=24.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
+.++++||+|+|||+|..+|+-.+||.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~al~g~ 50 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFALFGN 50 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHSC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 478899999999999999999999875
No 321
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.90 E-value=0.39 Score=48.74 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=21.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.||+|+|||+|.++|+..+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998765
No 322
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=84.76 E-value=0.4 Score=48.00 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=21.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.||+|+|||+|.++|+-.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999765
No 323
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.76 E-value=0.36 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.||+|+|||+|.++|+-.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78899999999999999998654
No 324
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=84.60 E-value=0.5 Score=47.81 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=22.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
.-+.|.|++|+|||++++.|++.+-
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999884
No 325
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=84.50 E-value=0.54 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEecCCCCchhHHHHHHHHHHc
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
+.|.|++|+|||+.++.|++.|-
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999883
No 326
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=84.48 E-value=0.41 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.||+|+|||+|.++|+-.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999998655
No 327
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.48 E-value=0.47 Score=48.53 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.+.||+|+|||+|.++|+..+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 389999999999999999999755
No 328
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=84.47 E-value=0.41 Score=49.59 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=21.1
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.||+|+|||+|.++|+-.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999998655
No 329
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=84.45 E-value=1.9 Score=47.26 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=17.7
Q ss_pred eEEEEecCCCCchhH--HHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRK--IAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~--LAraLAe~L 362 (710)
..+++.+|||+|||. +.-+|.+.+
T Consensus 20 ~~~lv~a~TGsGKT~~~~~~~l~~~~ 45 (451)
T 2jlq_A 20 RLTIMDLHPGAGKTKRILPSIVREAL 45 (451)
T ss_dssp CEEEECCCTTSSCCTTHHHHHHHHHH
T ss_pred CeEEEECCCCCCHhhHHHHHHHHHHH
Confidence 377999999999998 444444444
No 330
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.42 E-value=0.51 Score=45.09 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..++|+|++|+|||+|.++|+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999998654
No 331
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=84.39 E-value=0.49 Score=45.14 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=22.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..+.|+|++|+|||+|.++|+...+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999987553
No 332
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=84.26 E-value=0.48 Score=48.78 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
-.+.+.||+|+|||+|.++|+-.+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999998755
No 333
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=84.26 E-value=0.49 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.|.||+|+|||+|.++||-.+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999765
No 334
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.22 E-value=0.48 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.+.||+|+|||+|.++|+-.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999998654
No 335
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.18 E-value=0.49 Score=48.51 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.+.||+|+|||+|.++|+-.+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 388999999999999999999755
No 336
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=84.10 E-value=0.55 Score=46.68 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=22.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
-+.|.|++|+|||+.++.|++.+-
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999884
No 337
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=83.96 E-value=0.45 Score=48.45 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.||+|+|||+|.++|+-.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999765
No 338
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.92 E-value=0.66 Score=44.71 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.1
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
....++|+|++|+|||+|..+|....+
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345899999999999999999987554
No 339
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=83.90 E-value=0.57 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||+|.++||-.+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 378999999999999999999765
No 340
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.89 E-value=0.7 Score=45.31 Aligned_cols=36 Identities=19% Similarity=0.008 Sum_probs=24.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHH-HcCCCcceEEecC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEI-IYGGKENFICADL 374 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~-L~gs~~~fI~iD~ 374 (710)
..+++.|+||+|||.+|..+|.. ......+.+.+.+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 48999999999999999877643 3222344444433
No 341
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=83.89 E-value=2.1 Score=47.31 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=50.0
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCCCCCCCCCCCCccccccc--cc--cccccccchhhHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVG--GD--SVQFRGKTLADYVAWEL 412 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~~~~e~~~~~sl~~~~~~--G~--~~~f~G~t~~~~L~~al 412 (710)
.....++.|++|+|||++.+.+++. ...+.+-.... . ..++. ..+. |. ....+-.|+-..|....
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~-----~~~lVlTpT~~---a--a~~l~-~kl~~~~~~~~~~~~V~T~dsfL~~~~ 228 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF-----EEDLILVPGRQ---A--AEMIR-RRANASGIIVATKDNVRTVDSFLMNYG 228 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT-----TTCEEEESCHH---H--HHHHH-HHHTTTSCCCCCTTTEEEHHHHHHTTT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc-----CCeEEEeCCHH---H--HHHHH-HHhhhcCccccccceEEEeHHhhcCCC
Confidence 3458899999999999998776642 12222211100 0 00000 0000 11 01112223322222111
Q ss_pred Hh--CCCeEEEEeccccCCHHHHHHHHhhHhC
Q 005186 413 LK--KPLSVVYLENVDKADVHVQNSLSKAIQT 442 (710)
Q Consensus 413 ~~--~p~sVI~LDEIDKa~~~vqn~LLq~LE~ 442 (710)
.. .+..+|++||+-.++......|+.++..
T Consensus 229 ~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~ 260 (446)
T 3vkw_A 229 KGARCQFKRLFIDEGLMLHTGCVNFLVEMSLC 260 (446)
T ss_dssp SSCCCCCSEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred CCCCCcCCEEEEeCcccCCHHHHHHHHHhCCC
Confidence 10 1267999999999999999988887754
No 342
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=83.82 E-value=0.73 Score=52.29 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=28.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..++|+|++|+|||++|+.|++.+.....++..+|..
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 5799999999999999999999874333445555543
No 343
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=83.79 E-value=0.76 Score=46.13 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..-+.|.|++|+|||++++.|++.+-
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34789999999999999999999883
No 344
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=83.79 E-value=0.58 Score=50.36 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||+|.++||-.+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 378999999999999999999765
No 345
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=83.73 E-value=0.58 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
-.+.|.||+|+|||+|.++||-.+
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 388999999999999999999765
No 346
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=83.68 E-value=0.83 Score=41.65 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....+++.|++|+|||+|..+|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998864
No 347
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=83.62 E-value=0.76 Score=45.84 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=22.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.-+.|.|++|+|||++++.|++.+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999998
No 348
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=83.50 E-value=0.79 Score=45.91 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=22.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.+.|+.|+|||++|+.||+.+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999988
No 349
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=83.46 E-value=0.61 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||+|.++||-.+
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 388999999999999999999765
No 350
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=83.44 E-value=0.55 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=21.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.|.||+|+|||+|.++||-.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 78999999999999999999765
No 351
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=83.40 E-value=0.75 Score=44.97 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=24.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYG 364 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~g 364 (710)
++..+|+||+|+|||++..||.-.++|
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 358899999999999999999988876
No 352
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=83.38 E-value=0.59 Score=45.58 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe 360 (710)
..++|.|++|+||+++|.+|.+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999887
No 353
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=83.16 E-value=0.89 Score=48.40 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=32.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
...+++.|..|+|||++|.+||..+-..+...+.+|+..
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 458889999999999999999988765566777777763
No 354
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=83.14 E-value=0.46 Score=47.17 Aligned_cols=24 Identities=13% Similarity=-0.010 Sum_probs=21.6
Q ss_pred CeEEEEecCCCCchhHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
...+.|.|++|+|||++++.|+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999875
No 355
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=83.09 E-value=0.52 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||+|.++||-.+
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 388999999999999999999765
No 356
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=82.90 E-value=1.3 Score=43.04 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=24.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
...++|+|.+|+|||+|+..|+...+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3578999999999999999999887643
No 357
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=82.85 E-value=0.53 Score=48.36 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.3
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.||+|+|||+|.++|+-.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999765
No 358
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=82.84 E-value=0.67 Score=41.83 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=19.2
Q ss_pred EEEEecCCCCchhHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe 360 (710)
.+++.|++|+|||+|..+|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998875
No 359
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.53 E-value=1.1 Score=47.70 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=27.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCC------CcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGG------KENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs------~~~fI~iD~s 375 (710)
..+.++||+|+|||+|++.|+..+-.. ....+++|..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 489999999999999999999765210 2345677664
No 360
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.51 E-value=0.83 Score=48.66 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=27.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcC--CCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYG--GKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~g--s~~~fI~iD~s 375 (710)
+.+++.||+|+|||+|+..++..... .....+.+|.-
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 47899999999999998766554432 24567777765
No 361
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=82.41 E-value=0.76 Score=41.29 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
..+++.|++|+|||+|..+|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999988753
No 362
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=82.39 E-value=3.8 Score=43.53 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=23.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
...+.|.|++|+|||+|..+|...+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999998664
No 363
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=82.28 E-value=0.75 Score=42.46 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=19.9
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe 360 (710)
..+.|.|++|+|||+|.++|+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999875
No 364
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=82.23 E-value=0.75 Score=43.11 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
....++++|++|+|||+|..+|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998763
No 365
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=82.22 E-value=0.81 Score=41.26 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.8
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe 360 (710)
..+++.|++|+|||+|..++..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999988875
No 366
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=82.15 E-value=0.82 Score=41.25 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...+++.|++|+|||+|..+|..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999998875
No 367
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=82.09 E-value=0.81 Score=41.91 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++++|++|+|||+|..+|..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45899999999999999988763
No 368
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=82.03 E-value=0.83 Score=41.41 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=21.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
...++++|++|+|||+|..+|...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 458999999999999999998753
No 369
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.98 E-value=0.77 Score=49.90 Aligned_cols=38 Identities=16% Similarity=0.039 Sum_probs=31.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..++++.|++|+|||.+++.|...+...+.+++.+|..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45899999999999999887776665556778888876
No 370
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=81.94 E-value=0.58 Score=44.05 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=19.5
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe 360 (710)
.-+++.|++|||||+|.+.|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998874
No 371
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=81.88 E-value=1 Score=42.06 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++|+|++|+|||+|..+|+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999874
No 372
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=81.78 E-value=1.2 Score=41.54 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
....++++|++|+|||+|..+|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999988763
No 373
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=81.74 E-value=0.74 Score=50.09 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
-.+.|.||+|+|||+|.++|+-.+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 389999999999999999999754
No 374
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.71 E-value=0.77 Score=41.65 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
..+++.|++|+|||+|..+|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999988753
No 375
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=81.63 E-value=0.86 Score=41.92 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....++++|++|+|||+|..+|..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999998875
No 376
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=81.54 E-value=0.55 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.6
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.|.||+|+|||+|.++||-.+
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999999755
No 377
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=81.06 E-value=1 Score=41.44 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
....++++|++|+|||+|..+|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999988743
No 378
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=81.02 E-value=0.72 Score=48.04 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
..+.+.||+|+|||+|.++|+-.+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 388999999999999999998765
No 379
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=80.98 E-value=1.2 Score=54.25 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=35.8
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHH
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
..++|.++.++.|...+.... .....+.++|+.|+|||+||+.+++.
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred ceeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 348899988888887774221 12348999999999999999888754
No 380
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=80.98 E-value=1.4 Score=49.82 Aligned_cols=42 Identities=21% Similarity=0.171 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 308 WQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 308 GQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
-|.+|+..+...+.. ....+++++|+|+|||.+|-.++..+.
T Consensus 182 ~Q~~ai~~~~~~~~~--------------~~~~~ll~~~TGsGKT~~~~~~~~~l~ 223 (590)
T 3h1t_A 182 YQQIAINRAVQSVLQ--------------GKKRSLITMATGTGKTVVAFQISWKLW 223 (590)
T ss_dssp HHHHHHHHHHHHHHT--------------TCSEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--------------CCCceEEEecCCCChHHHHHHHHHHHH
Confidence 477777776665532 112578999999999999888877664
No 381
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=80.78 E-value=2.8 Score=44.32 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.3
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
...+.|.||+|+|||+|.++|+..+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 35899999999999999999998775
No 382
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=80.57 E-value=1.3 Score=48.43 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=27.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc-----C-CCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY-----G-GKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~-----g-s~~~fI~iD~s 375 (710)
..++|+||+|+|||+|++.|+-... | .....++++..
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4899999999999999997764332 1 23456777665
No 383
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=80.53 E-value=2.4 Score=45.34 Aligned_cols=37 Identities=11% Similarity=-0.046 Sum_probs=28.4
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
...+..|--|+|||++|..||..+-..+.+.+.+|+.
T Consensus 145 vIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 145 VVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3444456889999999999998775555677888887
No 384
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=80.49 E-value=1.2 Score=43.67 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=30.9
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
+.|.|..|+|||++|..||..+-..+...+.+|+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 455899999999999999999976677888888885
No 385
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=80.39 E-value=0.92 Score=41.21 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
...++++|++|+|||+|..+|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 468999999999999999998753
No 386
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=80.34 E-value=0.96 Score=42.24 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++|.|++|+|||+|..+|+.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999874
No 387
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=80.29 E-value=1 Score=40.70 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.9
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe 360 (710)
..++++|++|+|||+|..+|..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999998875
No 388
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=80.09 E-value=1.3 Score=47.17 Aligned_cols=36 Identities=8% Similarity=0.052 Sum_probs=26.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
..+++.|+||+|||.+|..+|..+...+.++..+.+
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 489999999999999999998766433445444433
No 389
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=80.06 E-value=0.98 Score=41.10 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....+++.|++|+|||+|..++..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999998875
No 390
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=80.04 E-value=1.1 Score=41.10 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.7
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....+++.|++|+|||+|..+|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999998864
No 391
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=79.92 E-value=0.94 Score=41.15 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.8
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe 360 (710)
..++++|++|+|||+|..+|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4799999999999999998874
No 392
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=79.87 E-value=0.93 Score=41.32 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=18.9
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALA 359 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLA 359 (710)
..+++.|++|+|||+|..++.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999886
No 393
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=79.72 E-value=1 Score=41.82 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++|.|++|+|||+|..+|..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999875
No 394
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.71 E-value=1.4 Score=49.44 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=27.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 374 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~ 374 (710)
..+++.||+|+|||+|++.|+..+.......+.+..
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 489999999999999999999876544444555544
No 395
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=79.69 E-value=0.9 Score=49.08 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
-.+.+.||+|+|||+|.++|+-.+
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 389999999999999999999765
No 396
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=79.65 E-value=0.72 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
-.+.++||+|+|||+|+++|+..+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 389999999999999999999765
No 397
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=79.59 E-value=1 Score=40.80 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++++|++|+|||+|..+|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999998875
No 398
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=79.52 E-value=1 Score=41.41 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++++|++|+|||+|..+|..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999998874
No 399
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=79.52 E-value=1 Score=40.90 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=18.6
Q ss_pred eEEEEecCCCCchhHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALA 359 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLA 359 (710)
..++++|++|+|||+|..++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999998774
No 400
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=79.49 E-value=1.1 Score=40.74 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=19.7
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe 360 (710)
..+++.|++|+|||+|..+|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999998874
No 401
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=79.45 E-value=1.2 Score=41.35 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.8
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++|+|++|+|||+|..+|..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998875
No 402
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=79.39 E-value=1 Score=40.74 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
.+++.|++|+|||.|..++...-+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~ 25 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc
Confidence 489999999999999999876443
No 403
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=79.27 E-value=1.4 Score=50.58 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=20.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYG 364 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~g 364 (710)
.+++.||+|||||+++..+...+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999988877766653
No 404
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=79.22 E-value=1.2 Score=41.21 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
+...++|+|++|+|||+|..+|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999998875
No 405
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=79.21 E-value=1 Score=41.42 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
...++++|++|+|||+|..+|...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999999988764
No 406
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=79.18 E-value=1.5 Score=48.32 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=26.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcC-CCcceEEecC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYG-GKENFICADL 374 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~g-s~~~fI~iD~ 374 (710)
..+++.|+||+|||+++..||..+.. .+.+++.+++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 38999999999999999999986642 2335555443
No 407
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=78.97 E-value=0.78 Score=50.96 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=21.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++++||+|+|||+|+++|+..+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 79999999999999999999865
No 408
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=78.89 E-value=1.1 Score=42.00 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++++|++|+|||+|+.+|..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECcCCCCHHHHHHHHHc
Confidence 35899999999999999999875
No 409
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=78.88 E-value=1.1 Score=42.49 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...+++.|++|+|||+|..++..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998875
No 410
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=78.87 E-value=1.5 Score=48.10 Aligned_cols=37 Identities=14% Similarity=-0.030 Sum_probs=27.8
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc-CCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY-GGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~-gs~~~fI~iD~s 375 (710)
..+++.|+||+|||.+|..+|..+. +.+.+++.+++-
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899999999999999999987654 234455555443
No 411
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=78.72 E-value=1.3 Score=42.27 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=20.6
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....++++|++|+|||+|..+|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999998874
No 412
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=78.66 E-value=1.1 Score=40.99 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=21.2
Q ss_pred CeEEEEecCCCCchhHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
...++++|++|+|||+|..+|...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998753
No 413
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=78.64 E-value=1.3 Score=47.31 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=25.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
++..+|+||+|+|||.+..||.-.++|.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~~l~g~ 52 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFFALFGA 52 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3689999999999999999999888875
No 414
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=78.59 E-value=0.99 Score=43.90 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=24.8
Q ss_pred EEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 341 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
++++|++|+|||.+|..|+.. ..+.++++-+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecC
Confidence 689999999999999999864 2456666654
No 415
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=78.59 E-value=1.4 Score=40.76 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
+...++|+|++|+|||+|..+|...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4468999999999999999988753
No 416
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=78.56 E-value=1.4 Score=41.33 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....++++|++|+|||+|..+|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 456899999999999999999875
No 417
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=78.52 E-value=1.4 Score=41.72 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
+...++|+|++|+|||+|..+|..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 446899999999999999988874
No 418
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=78.36 E-value=1.2 Score=41.79 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++++|++|+|||+|..+|..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998864
No 419
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=78.29 E-value=1.1 Score=46.87 Aligned_cols=25 Identities=16% Similarity=-0.069 Sum_probs=22.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..+++.|+.|+|||++.+.|.....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~ 29 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQH 29 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcC
Confidence 4789999999999999999997653
No 420
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=78.27 E-value=1.1 Score=40.99 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++++|++|+|||+|..+|..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999998874
No 421
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=78.25 E-value=1.1 Score=42.00 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
...++|+|++|+|||+|..+|...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999988763
No 422
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=78.11 E-value=1.7 Score=48.00 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=28.2
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
..+++.|+||+|||.+|..+|..+...+.+++.+.+-
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 4899999999999999998887664334555555443
No 423
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=78.08 E-value=1.1 Score=41.25 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.0
Q ss_pred CCeEEEEecCCCCchhHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALA 359 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLA 359 (710)
....++++|++|+|||+|..+|.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999998875
No 424
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=78.08 E-value=1.4 Score=46.46 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=23.8
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYG 364 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~g 364 (710)
++..+|+||+|+|||.+..||.-.+++
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l~~ 49 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 357899999999999999999887765
No 425
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=78.03 E-value=1.2 Score=40.98 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....++++|++|+|||+|..+|..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 446899999999999999998865
No 426
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=77.98 E-value=1.3 Score=41.28 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.1
Q ss_pred CCeEEEEecCCCCchhHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALA 359 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLA 359 (710)
+...+++.|++|+|||+|..++.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHT
T ss_pred CeeEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999988776
No 427
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.92 E-value=1.4 Score=41.61 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
+...++++|++|+|||+|..+|..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999998875
No 428
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=77.82 E-value=1.2 Score=41.43 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=21.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
...++++|++|+|||+|..+|...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999988753
No 429
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=77.80 E-value=1.4 Score=41.38 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.6
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....+++.|++|+|||+|..+|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999988753
No 430
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=77.77 E-value=0.78 Score=43.84 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...+.|.|++|+|||+|.++|+.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999988763
No 431
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=77.65 E-value=1.4 Score=40.52 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++++|++|+|||+|..++..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999988875
No 432
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.54 E-value=1 Score=41.76 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALA 359 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLA 359 (710)
....++++|++|+|||+|..++.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999987765
No 433
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=77.53 E-value=1.4 Score=41.16 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....++++|++|+|||+|..+|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998873
No 434
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=77.39 E-value=1.4 Score=41.53 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....++++|++|+|||.|..+|..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999999998875
No 435
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=77.38 E-value=2.1 Score=52.36 Aligned_cols=45 Identities=13% Similarity=-0.011 Sum_probs=35.0
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCeEEEEecCCCCchhHHHHHHHH
Q 005186 304 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 304 ~~ViGQdeAi~~I~~aI~~~r~g~~~~~~~~~r~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
+..+|.++.+..|...+.... ....+.++|+.|+|||+||+.++.
T Consensus 128 k~~VGRe~eLeeL~elL~~~d------------~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR------------PAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC------------SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC------------CCeEEEEEcCCCccHHHHHHHHHH
Confidence 335899988888888775311 123899999999999999998884
No 436
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=77.29 E-value=1.3 Score=41.33 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
....++++|++|+|||.|.+.|....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999998776543
No 437
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=77.28 E-value=1.2 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.|.||+|+|||+|.++|+ .+
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 78999999999999999999 44
No 438
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=77.25 E-value=1.3 Score=40.75 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....++++|++|+|||+|..+|..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999998875
No 439
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=77.21 E-value=1.8 Score=48.15 Aligned_cols=37 Identities=11% Similarity=-0.277 Sum_probs=28.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCC-CcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs-~~~fI~iD~s 375 (710)
..+++.|+||+|||.+|..+|..+... +.+++.+++-
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 488999999999999999999877543 4455555543
No 440
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=77.13 E-value=1.3 Score=40.89 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++++|++|+|||+|..++..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999998875
No 441
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=77.00 E-value=1.4 Score=41.67 Aligned_cols=25 Identities=12% Similarity=0.003 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
....++++|++|+|||+|..+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4568999999999999999988753
No 442
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=76.85 E-value=1.3 Score=40.97 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
+...++++|++|+|||.|...+...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999988753
No 443
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=76.82 E-value=1.5 Score=41.55 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
....++++|++|+|||.|..+|...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999988753
No 444
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=76.79 E-value=2.6 Score=44.32 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=32.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
..+++.|..|+|||++|..||..+-..+.....+|+..
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 47889999999999999999998876666777777763
No 445
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=76.77 E-value=1.2 Score=41.44 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=18.8
Q ss_pred EEEEecCCCCchhHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe 360 (710)
.++++|++|+|||+|..+|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999988863
No 446
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=76.70 E-value=3.7 Score=49.56 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++|+||+|+|||++.+.|+-..
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999986543
No 447
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=76.67 E-value=2.7 Score=44.56 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=33.0
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
...+++.|..|+|||++|.+||..+-..+...+.+|+..
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 348899999999999999999998876667778888873
No 448
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=76.64 E-value=1.7 Score=46.67 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=24.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
.+..+|+||+|+|||.+..+|+-.++|.
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~~~~~g~ 53 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAYLALTGQ 53 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHSC
T ss_pred CCeEEEECCCCCChhHHHHHHHHhccCC
Confidence 3589999999999999999999877653
No 449
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=76.58 E-value=1.2 Score=47.51 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=22.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
.+.|.||+|+|||+|.+.|+..+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 899999999999999999999873
No 450
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=76.57 E-value=2.1 Score=42.82 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=30.5
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.+.|.|.-|+|||++|..||..+-..+...+.+|+..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 3555799999999999999998876667788888885
No 451
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=76.54 E-value=1.7 Score=40.92 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
+...++|+|++|+|||+|...+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999887753
No 452
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=76.50 E-value=1.6 Score=41.49 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCCchhHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALA 359 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLA 359 (710)
....++++|++|+|||.|..++.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999998875
No 453
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=76.38 E-value=1.6 Score=40.76 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++|+|++|+|||+|..+|..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 46899999999999999998875
No 454
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=76.29 E-value=1.4 Score=45.83 Aligned_cols=23 Identities=22% Similarity=0.054 Sum_probs=21.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
..++++||+|+|||.+|..+|..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999875
No 455
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=76.26 E-value=1.4 Score=42.15 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.6
Q ss_pred CeEEEEecCCCCchhHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALA 359 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLA 359 (710)
...+++.|++|+|||+|..++.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999999875
No 456
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=76.21 E-value=2.2 Score=44.65 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=32.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
...+++.|..|+|||++|.+||..+-..+...+.+|+..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 458899999999999999999988765566777777763
No 457
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=76.19 E-value=0.99 Score=48.13 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=22.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
.-|.|.|+.|+|||++++.|++.+.
T Consensus 8 ~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4788999999999999999999884
No 458
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=76.17 E-value=1.6 Score=40.61 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=19.8
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...+++.|++|+|||+|..+|..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999988753
No 459
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=76.16 E-value=1.3 Score=47.63 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~ 361 (710)
.+.|+||+|+|||+|.++|+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 7899999999999999998843
No 460
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=76.15 E-value=1.4 Score=41.25 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++|+|++|+|||+|..+|..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999998875
No 461
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=76.08 E-value=1.6 Score=41.19 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....++++|++|+|||.|...+..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHh
Confidence 346899999999999999988875
No 462
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=75.98 E-value=0.82 Score=45.98 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=22.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGG 365 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs 365 (710)
.+.++||+|+|||+|.++|+-.++..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccccC
Confidence 34578999999999999999988643
No 463
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=75.95 E-value=2.2 Score=43.92 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=31.1
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
-.+.+.|--|+|||++|..||..+-..+..++.+|+..
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35666699999999999999988866567788888884
No 464
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=75.87 E-value=1.6 Score=48.78 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=23.0
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
..+.|.||+|+|||+|.++|+-.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 5899999999999999999998774
No 465
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=75.71 E-value=1.6 Score=41.58 Aligned_cols=25 Identities=24% Similarity=0.122 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
....++|+|++|+|||+|..+|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3468999999999999999988853
No 466
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=75.70 E-value=1.5 Score=40.91 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
...++++|++|+|||+|..+|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999988754
No 467
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=75.61 E-value=1.5 Score=41.26 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++++|++|+|||+|..+|..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 45899999999999999998875
No 468
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=75.59 E-value=1.6 Score=41.80 Aligned_cols=26 Identities=19% Similarity=0.038 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
....+++.|++|+|||.|..+|...-
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999988644
No 469
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=75.54 E-value=1.6 Score=41.19 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
....++|+|++|+|||.|..++...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 4568999999999999999988753
No 470
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=75.48 E-value=4 Score=38.64 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=28.9
Q ss_pred EEEEe-cCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 340 WFNFT-GPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 340 ~lLf~-GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.+.|. +-.|+|||++|..||..+-..+...+.+|+..
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34454 66789999999999988866667788888874
No 471
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=75.46 E-value=1.7 Score=40.76 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....++|+|++|+|||+|..+|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999998875
No 472
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=75.43 E-value=1.4 Score=40.75 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++|+|++|+|||+|..+|..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45899999999999999998874
No 473
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=75.34 E-value=1.5 Score=41.31 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=22.3
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHHc
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
...++|+|++|+|||+|..+|...-+
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCC
Confidence 35899999999999999999886543
No 474
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=75.02 E-value=1.2 Score=46.23 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.4
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.|.||+|+|||+|.++|+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 78999999999999999998543
No 475
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=74.97 E-value=2.3 Score=48.27 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=30.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s 375 (710)
.++++.|..|+|||++|-+||..+-..+...+.+|+.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 4889999999999999999998876556666777776
No 476
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=74.97 E-value=2.7 Score=45.00 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=19.2
Q ss_pred EEEEecCCCCchhHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe 360 (710)
.+.|+|++|+|||+|..+|+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 489999999999999999874
No 477
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=74.93 E-value=1.5 Score=41.68 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++|+|++|+|||+|..+|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998875
No 478
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=74.76 E-value=1.5 Score=41.47 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++|+|++|+|||+|..+|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999988764
No 479
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=74.64 E-value=1.6 Score=41.17 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCCchhHHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
....++++|++|+|||+|..+|...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999988753
No 480
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=74.55 E-value=1.5 Score=48.46 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=21.9
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.+.+.||+|+|||+|.++|+...
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999999999999876
No 481
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=74.49 E-value=1.7 Score=42.97 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....++|+|++|+|||+|..+|..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 346899999999999999988874
No 482
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=74.45 E-value=1.3 Score=46.20 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=19.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
..++++||+|+|||+|.++|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998753
No 483
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=74.43 E-value=1.8 Score=40.83 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=20.5
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....++++|++|+|||.|..++..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999988874
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=74.35 E-value=2.1 Score=47.97 Aligned_cols=35 Identities=17% Similarity=0.052 Sum_probs=24.9
Q ss_pred eEEEEecCCCCchhHHHHH--HHHHHc-CCCcceEEecCC
Q 005186 339 IWFNFTGPDLCGKRKIAIA--LAEIIY-GGKENFICADLC 375 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAra--LAe~L~-gs~~~fI~iD~s 375 (710)
..++++||+|+|||+|++. ++-.+. +. .-+.++..
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~--g~i~v~g~ 77 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDE--PGVFVTFE 77 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCC--CEEEEESS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCC--CEEEEEEe
Confidence 3899999999999999999 444443 32 34555543
No 485
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=74.34 E-value=3 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhHHHHHHHHHH
Q 005186 340 WFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L 362 (710)
.++++||+|+|||++.+.|+-..
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHH
Confidence 78999999999999999988644
No 486
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=74.32 E-value=1.7 Score=47.95 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=20.0
Q ss_pred EEEecCCCCchhHHHHHHHHHH
Q 005186 341 FNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 341 lLf~GP~GvGKT~LAraLAe~L 362 (710)
+.|+||+|+|||+|.++|+...
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 8999999999999999998653
No 487
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=74.05 E-value=1.8 Score=41.77 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.3
Q ss_pred CeEEEEecCCCCchhHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
...++|+|++|+|||+|...|...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998864
No 488
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=73.90 E-value=1.6 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
-.+.|+||+|+|||+|.++|+-.+
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999755
No 489
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=73.88 E-value=1.8 Score=43.78 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=19.8
Q ss_pred eEEEEecCCCCchhHHHHHHHH
Q 005186 339 IWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe 360 (710)
..+.|.|++|+|||+|..+|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999864
No 490
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=73.76 E-value=1.7 Score=41.91 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=21.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEII 362 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~L 362 (710)
...++|+|++|+|||+|..+|....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3589999999999999999887643
No 491
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=73.74 E-value=2.4 Score=50.27 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=21.1
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYG 364 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~g 364 (710)
.+++.||+|||||+++..++..+..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999988877776653
No 492
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=73.38 E-value=3.5 Score=43.96 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=32.5
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHc--CCCcceEEecCCC
Q 005186 339 IWFNFTGPDLCGKRKIAIALAEIIY--GGKENFICADLCP 376 (710)
Q Consensus 339 ~~lLf~GP~GvGKT~LAraLAe~L~--gs~~~fI~iD~s~ 376 (710)
.++++.|..|+|||++|.+||..+- ..+...+.+|+..
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 4899999999999999999998886 6667778888873
No 493
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=73.14 E-value=1.8 Score=40.66 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCchhHHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAEI 361 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe~ 361 (710)
...++++|++|+|||.|..+|...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998854
No 494
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=73.11 E-value=1.9 Score=41.59 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....++++|++|+|||+|..+|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999998874
No 495
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=73.00 E-value=1.8 Score=40.34 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.6
Q ss_pred CCeEEEEecCCCCchhHHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLAe 360 (710)
....++++|++|+|||.|..+|..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998874
No 496
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=72.99 E-value=1.6 Score=40.92 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=19.8
Q ss_pred CCeEEEEecCCCCchhHHHHHHH
Q 005186 337 RDIWFNFTGPDLCGKRKIAIALA 359 (710)
Q Consensus 337 ~~~~lLf~GP~GvGKT~LAraLA 359 (710)
+...++++|++|+|||+|..+|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999988773
No 497
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=72.69 E-value=1.1 Score=47.61 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHHc
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIY 363 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~ 363 (710)
-|.|.|+.|+|||++++.|++.+.
T Consensus 6 fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999999874
No 498
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=72.62 E-value=1.8 Score=41.31 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=20.4
Q ss_pred CeEEEEecCCCCchhHHHHHHHH
Q 005186 338 DIWFNFTGPDLCGKRKIAIALAE 360 (710)
Q Consensus 338 ~~~lLf~GP~GvGKT~LAraLAe 360 (710)
...++|+|++|+|||+|..+|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999998864
No 499
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=72.55 E-value=2.4 Score=48.80 Aligned_cols=22 Identities=5% Similarity=0.080 Sum_probs=16.5
Q ss_pred CCCeEEEEeccccCCHHHHHHH
Q 005186 415 KPLSVVYLENVDKADVHVQNSL 436 (710)
Q Consensus 415 ~p~sVI~LDEIDKa~~~vqn~L 436 (710)
....+|+|||+|.++......+
T Consensus 276 ~~~~~iViDEah~~~~~~~~~~ 297 (618)
T 2whx_A 276 PNYNLIVMDEAHFTDPCSVAAR 297 (618)
T ss_dssp CCCSEEEEESTTCCSHHHHHHH
T ss_pred cCCeEEEEECCCCCCccHHHHH
Confidence 4568999999999987654333
No 500
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=72.55 E-value=2.5 Score=43.00 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=30.0
Q ss_pred EEEEecCCCCchhHHHHHHHHHHcCCCcceEEecCCC
Q 005186 340 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 376 (710)
Q Consensus 340 ~lLf~GP~GvGKT~LAraLAe~L~gs~~~fI~iD~s~ 376 (710)
.+.|.|.-|+|||++|..||..+-..+...+.+|+..
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4555799999999999999988865566777888875
Done!