Query 005189
Match_columns 709
No_of_seqs 344 out of 2325
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 19:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 3E-132 6E-137 1158.7 67.3 687 4-708 25-718 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 5E-112 1E-116 990.7 68.8 650 13-707 13-677 (831)
3 COG0308 PepN Aminopeptidase N 100.0 2.2E-86 4.9E-91 773.8 58.3 664 9-704 12-697 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 3.4E-84 7.3E-89 745.2 65.9 642 11-688 4-701 (863)
5 PRK14015 pepN aminopeptidase N 100.0 2.8E-83 6E-88 740.0 67.2 645 10-687 15-710 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 1E-77 2.2E-82 674.9 40.6 427 9-465 6-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 1.4E-75 3E-80 639.0 36.9 385 9-395 1-390 (390)
8 KOG1047 Bifunctional leukotrie 100.0 1E-55 2.2E-60 458.2 27.5 430 11-463 13-460 (613)
9 KOG1932 TATA binding protein a 100.0 1.5E-36 3.3E-41 336.9 35.0 428 16-465 27-506 (1180)
10 PF11838 ERAP1_C: ERAP1-like C 100.0 3.9E-30 8.5E-35 273.6 15.1 175 532-708 1-178 (324)
11 COG3975 Predicted protease wit 99.4 5.5E-11 1.2E-15 125.4 20.5 300 158-475 115-447 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.2 2E-11 4.2E-16 110.8 7.2 106 299-418 23-128 (128)
13 PF10460 Peptidase_M30: Peptid 97.5 0.0057 1.2E-07 64.3 17.4 142 298-455 136-285 (366)
14 PF05299 Peptidase_M61: M61 gl 97.2 0.00022 4.7E-09 62.9 3.1 43 301-343 4-57 (122)
15 PF04450 BSP: Peptidase of pla 96.9 0.02 4.3E-07 55.8 13.6 170 237-450 27-204 (205)
16 PF07607 DUF1570: Protein of u 95.9 0.0044 9.6E-08 55.2 2.2 39 303-341 3-43 (128)
17 PF11940 DUF3458: Domain of un 95.1 1.3 2.8E-05 47.5 17.4 208 468-688 6-247 (367)
18 PF10026 DUF2268: Predicted Zn 92.4 0.5 1.1E-05 46.0 7.9 100 239-345 4-113 (195)
19 PRK04860 hypothetical protein; 86.0 1.4 3E-05 41.1 5.2 70 236-314 5-76 (160)
20 PF01863 DUF45: Protein of unk 85.1 5.3 0.00011 39.0 9.2 92 235-353 109-200 (205)
21 COG4324 Predicted aminopeptida 84.1 1 2.2E-05 44.4 3.4 40 299-344 195-234 (376)
22 smart00731 SprT SprT homologue 82.9 1 2.2E-05 41.5 2.9 65 242-315 5-73 (146)
23 PF10023 DUF2265: Predicted am 81.6 1.2 2.6E-05 46.5 3.0 39 300-344 164-202 (337)
24 PF12725 DUF3810: Protein of u 76.4 2.8 6E-05 44.1 3.9 31 301-343 196-226 (318)
25 PF01447 Peptidase_M4: Thermol 73.2 6.4 0.00014 36.4 5.0 75 231-313 67-147 (150)
26 PF03272 Enhancin: Viral enhan 66.9 1.6E+02 0.0035 35.1 15.8 129 303-451 238-377 (775)
27 COG2719 SpoVR Uncharacterized 64.7 38 0.00082 36.4 9.0 33 327-359 269-301 (495)
28 COG4783 Putative Zn-dependent 62.9 8.2 0.00018 42.0 3.9 56 256-316 90-145 (484)
29 PF04234 CopC: CopC domain; I 62.7 42 0.0009 28.4 7.6 62 45-109 18-82 (97)
30 COG0362 Gnd 6-phosphogluconate 62.1 41 0.00089 36.0 8.6 118 566-703 312-443 (473)
31 PF01435 Peptidase_M48: Peptid 57.6 16 0.00035 36.0 4.9 71 241-320 34-108 (226)
32 PRK04351 hypothetical protein; 57.3 12 0.00026 34.5 3.6 16 298-313 58-73 (149)
33 PF06114 DUF955: Domain of unk 57.3 11 0.00024 32.7 3.3 18 301-318 42-59 (122)
34 PF12315 DUF3633: Protein of u 55.9 17 0.00036 35.2 4.3 41 301-343 93-133 (212)
35 COG3227 LasB Zinc metalloprote 55.8 12 0.00026 40.7 3.6 110 228-344 266-381 (507)
36 PF10989 DUF2808: Protein of u 55.7 35 0.00076 31.4 6.4 47 73-120 76-122 (146)
37 COG1451 Predicted metal-depend 53.8 81 0.0018 31.3 9.0 92 235-353 120-211 (223)
38 PF10263 SprT-like: SprT-like 49.6 12 0.00026 34.7 2.3 18 298-315 57-74 (157)
39 PRK03982 heat shock protein Ht 49.5 46 0.001 34.5 6.8 66 240-316 70-140 (288)
40 COG0501 HtpX Zn-dependent prot 48.7 36 0.00078 35.4 6.0 68 244-319 105-175 (302)
41 PRK05457 heat shock protein Ht 47.7 37 0.00079 35.2 5.7 68 240-316 79-149 (284)
42 COG2372 CopC Uncharacterized p 46.6 55 0.0012 29.1 5.7 60 47-109 47-110 (127)
43 PF13699 DUF4157: Domain of un 45.9 30 0.00064 28.1 3.7 63 243-313 6-73 (79)
44 PRK01345 heat shock protein Ht 45.9 44 0.00095 35.2 6.0 68 240-316 69-139 (317)
45 PF08014 DUF1704: Domain of un 43.6 1.2E+02 0.0026 32.4 8.8 83 243-340 118-213 (349)
46 PRK04897 heat shock protein Ht 42.8 53 0.0012 34.2 6.1 68 240-316 82-152 (298)
47 cd04269 ZnMc_adamalysin_II_lik 42.8 86 0.0019 30.1 7.3 14 300-313 130-143 (194)
48 PRK03001 M48 family peptidase; 41.5 42 0.0009 34.7 5.0 66 240-316 69-139 (283)
49 PHA02456 zinc metallopeptidase 41.4 18 0.00039 30.8 1.8 15 300-314 78-92 (141)
50 PF04597 Ribophorin_I: Ribopho 41.3 2.6E+02 0.0057 30.8 11.5 86 24-109 10-103 (432)
51 PF08325 WLM: WLM domain; Int 41.2 19 0.00041 34.7 2.2 21 297-317 78-98 (186)
52 PRK02870 heat shock protein Ht 41.0 64 0.0014 34.2 6.4 64 241-312 118-184 (336)
53 PF13574 Reprolysin_2: Metallo 40.8 18 0.00039 34.3 2.1 13 301-313 111-123 (173)
54 PF12174 RST: RCD1-SRO-TAF4 (R 37.6 60 0.0013 25.7 4.1 46 396-442 12-57 (70)
55 PRK03072 heat shock protein Ht 37.5 69 0.0015 33.2 5.9 69 239-316 71-142 (288)
56 PRK02391 heat shock protein Ht 36.3 83 0.0018 32.8 6.3 68 240-316 78-148 (296)
57 COG3091 SprT Zn-dependent meta 33.4 58 0.0013 29.8 3.8 14 299-312 59-72 (156)
58 cd04279 ZnMc_MMP_like_1 Zinc-d 32.6 1.7E+02 0.0037 27.0 7.2 37 219-255 2-41 (156)
59 PRK01265 heat shock protein Ht 32.3 1E+02 0.0022 32.6 6.1 67 240-315 85-154 (324)
60 PRK10301 hypothetical protein; 31.4 2.7E+02 0.0059 24.7 7.9 26 84-109 84-109 (124)
61 KOG2661 Peptidase family M48 [ 30.4 1.6E+02 0.0035 30.7 6.8 20 298-317 272-291 (424)
62 PF14524 Wzt_C: Wzt C-terminal 30.2 1.2E+02 0.0026 27.0 5.7 25 83-107 83-107 (142)
63 PF14675 FANCI_S1: FANCI solen 29.9 1.8E+02 0.0039 28.9 7.0 116 568-687 4-122 (223)
64 smart00638 LPD_N Lipoprotein N 29.0 3.4E+02 0.0073 31.2 10.4 94 549-642 356-454 (574)
65 PF09836 DUF2063: Uncharacteri 28.4 31 0.00067 28.9 1.3 31 402-432 55-85 (94)
66 PF15641 Tox-MPTase5: Metallop 28.3 99 0.0021 25.2 3.9 18 299-316 62-80 (109)
67 PF13205 Big_5: Bacterial Ig-l 27.2 3.7E+02 0.0081 22.4 8.0 26 83-108 59-85 (107)
68 PF14734 DUF4469: Domain of un 27.1 2.7E+02 0.0059 23.9 6.7 27 83-109 61-89 (102)
69 PF13402 M60-like: Peptidase M 26.6 1.4E+02 0.0029 31.2 6.1 107 232-346 144-259 (307)
70 PF01431 Peptidase_M13: Peptid 25.8 44 0.00096 32.5 2.1 33 287-319 22-54 (206)
71 COG2856 Predicted Zn peptidase 25.6 2.3E+02 0.005 27.9 6.9 39 301-339 72-115 (213)
72 PRK15245 type III effector pho 25.0 1.9E+02 0.0041 28.0 5.8 116 148-284 90-215 (241)
73 PF01421 Reprolysin: Reprolysi 24.3 86 0.0019 30.3 3.8 14 299-312 129-142 (199)
74 PF09768 Peptidase_M76: Peptid 24.3 2.8E+02 0.0061 26.3 7.0 18 298-315 68-85 (173)
75 cd04272 ZnMc_salivary_gland_MP 24.3 1.8E+02 0.004 28.6 6.2 13 301-313 145-157 (220)
76 KOG2653 6-phosphogluconate deh 23.7 2.4E+02 0.0051 30.0 6.7 116 568-703 319-448 (487)
77 TIGR02421 QEGLA conserved hypo 23.6 2.5E+02 0.0053 30.2 7.1 79 245-340 145-236 (366)
78 PF13688 Reprolysin_5: Metallo 23.0 58 0.0012 31.4 2.3 15 299-313 140-154 (196)
79 PF08766 DEK_C: DEK C terminal 22.6 86 0.0019 23.2 2.6 38 408-445 2-39 (54)
80 KOG3607 Meltrins, fertilins an 21.4 2.2E+02 0.0047 33.6 6.8 88 220-312 242-334 (716)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-132 Score=1158.74 Aligned_cols=687 Identities=51% Similarity=0.819 Sum_probs=628.6
Q ss_pred cCCCCcCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCcCEEEEEecCceeeEEEeeeeccCCCccccCceEEEec
Q 005189 4 FKGQPRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVE 83 (709)
Q Consensus 4 ~~~~~rLp~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~~~ 83 (709)
+...+|||.+++|+||+|.|.+++....|.|++.|.+++.++++.|+||+.++.|.++.+....................
T Consensus 25 ~~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (882)
T KOG1046|consen 25 FPNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKEQ 104 (882)
T ss_pred ccccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCccccccccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999865322111111111111111
Q ss_pred CceEEEEEeCCCCCcc-eEEEEEEEEeeeCCCCcceEEeeecc-CCceeeeeecccCcCCCCceeeccCCCCCceEEEEE
Q 005189 84 ADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL-NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKIT 161 (709)
Q Consensus 84 ~~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~-~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l~ 161 (709)
. +.+.+.+++++.+| +|+|+|.|.|.+++++.|||+++|.+ ++.++++++|||||++||++|||||||++||+|+|+
T Consensus 105 ~-~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~It 183 (882)
T KOG1046|consen 105 E-ETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTIT 183 (882)
T ss_pred c-eEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEEE
Confidence 1 78889999999999 89999999999999999999999987 466689999999999999999999999999999999
Q ss_pred EEeCCCCeEeecCcccee-eecCCeEEEEEecCCCccceEEEEEEeeeEEEEeecCCCeEEEEEEeCCccchHHHHHHHH
Q 005189 162 LDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVA 240 (709)
Q Consensus 162 i~~p~~~~aisn~~~~~~-~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~ 240 (709)
|.||++++|+|||+++++ ..++++++++|++||+||||++||+||+|++.+..+.+|+++|+|++|+...+.+++++.+
T Consensus 184 l~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~ 263 (882)
T KOG1046|consen 184 LVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVA 263 (882)
T ss_pred EEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHH
Confidence 999999999999999876 4455599999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 005189 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 320 (709)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~ 320 (709)
.++|++|+++||+|||++|+|+|++|+|..|||||||||+|++..+|+++..++..++++++.+||||+|||||||+|||
T Consensus 264 ~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm 343 (882)
T KOG1046|consen 264 TKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTM 343 (882)
T ss_pred HHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHhhhHHHHHHHHHHhhhCccchhHHHHHHHHH-HHhhccccCCCCceeeecCCcccccccccceeecchhHHH
Q 005189 321 EWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 399 (709)
Q Consensus 321 ~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl 399 (709)
+||+|+|||||||+|+++++++..+|+|..+++++.+.. .++..|++.++||+..++.++.++.+.|+.++|.||++|+
T Consensus 344 ~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvl 423 (882)
T KOG1046|consen 344 KWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVL 423 (882)
T ss_pred hhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHH
Confidence 999999999999999999999999999999999887776 5789999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCceeEEEEEeCcEEEEEEEeeecC
Q 005189 400 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLSS 479 (709)
Q Consensus 400 ~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~~~~~l~Q~rf~~~ 479 (709)
|||+..+|++.|++||+.|+.+|+|+|++++|||++|+...+.+++++|+.|+.|+|||+++|.++++.++++|+||...
T Consensus 424 RML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~~ 503 (882)
T KOG1046|consen 424 RMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLSD 503 (882)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhccC
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred CC--CCCCeeEEEEEEEECccceeeeEEeecceeEEEecccccccccCCCCCCceEEeccCceEEEEEEcCHHHHHHHHH
Q 005189 480 GS--PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGY 557 (709)
Q Consensus 480 ~~--~~~~~w~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~ 557 (709)
.. .....|+||++|.+...+.....++..++..+.++. .+ +||++|.++.|||||+||+++|+.|++
T Consensus 504 ~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~--~wi~~N~~~~g~yRV~Yd~~~w~~l~~ 572 (882)
T KOG1046|consen 504 PDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD--QWIKVNLEQTGYYRVNYDDENWALLIE 572 (882)
T ss_pred CCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--eEEEEeCCcceEEEEEeCHHHHHHHHH
Confidence 64 234599999999887665445577777777777764 33 699999999999999999999999999
Q ss_pred HHHh-cCCChhhHHHHHHHHHHHHHhccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 005189 558 AIEM-KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFI 636 (709)
Q Consensus 558 ~l~~-~~~~~~~r~~li~D~~~la~~g~~~~~~~~~l~~~l~~E~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 636 (709)
+|.. ..+++.+|++||+|+|+|+++|+++++.+|+++.||.+|++|.||..+...|..+.. +.. .+.+..++.|++
T Consensus 573 ~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~--~~~~~~~~~~~~ 649 (882)
T KOG1046|consen 573 QLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LED--TEIYSKFKEFVK 649 (882)
T ss_pred HHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-ccc--chHHHHHHHHHH
Confidence 9987 689999999999999999999999999999999999999999999999999999888 444 458899999999
Q ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcccceeEEEe
Q 005189 637 SLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKVECEF 708 (709)
Q Consensus 637 ~l~~~~~~~lg~~~~~~~~~~~~~~r~~i~~~ac~~~~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~v~~~ 708 (709)
+++.+.++++||.....++ ....+|..++..||..|+++|.+.|.++|++|++. ++.||+++|.+|+|+
T Consensus 650 ~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~--~~~ip~~lr~~vy~~ 718 (882)
T KOG1046|consen 650 KLILPIFEKLGWSDGADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAG--TNPIPPDLREVVYCT 718 (882)
T ss_pred HHHHHHHHHhcCCccccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc--CCCCChhhhhhhhhH
Confidence 9999999999999865444 77899999999999999999999999999999987 677999999998875
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=5.3e-112 Score=990.69 Aligned_cols=650 Identities=25% Similarity=0.363 Sum_probs=542.8
Q ss_pred CceeeeEEEEEEecCCCC--eEEEEEEEEEEEECCcCEEEEEecCceeeEEEeeeeccCCCccccCceEEEecCceEEEE
Q 005189 13 FAVPKRYDIRLTPDLTSC--KFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (709)
Q Consensus 13 ~v~p~~Y~l~l~~~~~~~--~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (709)
.+.+.||+|+|+++.+.. .+.|+++|++++.++++.|.||+.+++|++|++++. .......++ ..|
T Consensus 13 ~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~----------~~~~~~~~~--~~i 80 (831)
T TIGR02412 13 LITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGI----------LDVAPVYDG--SRI 80 (831)
T ss_pred hccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCc----------ccCccccCC--CEE
Confidence 467999999999976554 558999999999888999999999999999998641 111122222 346
Q ss_pred EeCCCCCcceEEEEEEEEeeeCCCCcceEEeeeccCCceeeeeecccCcCCCCceeeccCCCCCceEEEEEEEeCCCCeE
Q 005189 91 EFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVA 170 (709)
Q Consensus 91 ~l~~~l~~g~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~~~~a 170 (709)
.++. |++|.++|+|.|.+.+++.+.|+|+..+..+|+ ++++|||||.+||+||||||||++||+|+++|++|++|+|
T Consensus 81 ~l~~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g~--~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v 157 (831)
T TIGR02412 81 PLPG-LLTGENTLRVEATRAYTNTGEGLHRFVDPVDGE--VYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTV 157 (831)
T ss_pred EccC-CCCCceEEEEEEEEEecCCCceEEEEEeCCCCe--EEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceE
Confidence 6665 777889999999999999999999865544453 7789999999999999999999999999999999999999
Q ss_pred eecCccceeeecCCeEEEEEecCCCccceEEEEEEeeeEEEEeecCCCeEEEEEEeCCccch--HHHHHHHHHHHHHHHH
Q 005189 171 LSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQ--GKFALNVAVKTLELYK 248 (709)
Q Consensus 171 isn~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~--~~~~l~~~~~~l~~~e 248 (709)
+|||++.+....++.++++|+.|||||||++||++|+|...+. ..+|+++++|++|+..+. ++++++.++++|++|+
T Consensus 158 ~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~-~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e 236 (831)
T TIGR02412 158 ISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQD-ESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFH 236 (831)
T ss_pred ECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEee-cCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999987665556678899999999999999999999998874 457899999999987654 5789999999999999
Q ss_pred HHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCccccchhHH
Q 005189 249 EYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWL 328 (709)
Q Consensus 249 ~~fg~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL 328 (709)
++||+|||++|+|+|++|+|..|||||||+|+|++. +++.+. .+...++.+..+|+||+|||||||+|||+||+|+||
T Consensus 237 ~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWL 314 (831)
T TIGR02412 237 RKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWL 314 (831)
T ss_pred HHhCCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhH
Confidence 999999999999999999999999999999999999 555544 334566778999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhCccchhHHHHHHHHH-HHhhccccCCCCceeeecCCcccccccccceeecchhHHHHHHHHhhC
Q 005189 329 NEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 407 (709)
Q Consensus 329 nEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG 407 (709)
|||||+|++++++++.+|++..|.+|..... .++..|+...+||+..++.++.++...|+.++|.||++||+||+..||
T Consensus 315 nEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lG 394 (831)
T TIGR02412 315 NESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVG 394 (831)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHC
Confidence 9999999999999999999988888876544 567889999999999888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCceeEEEEEe--CcEEE-EEEEeeecCCCCCC
Q 005189 408 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVK--EEKLE-LEQSQFLSSGSPGD 484 (709)
Q Consensus 408 ~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~--~~~~~-l~Q~rf~~~~~~~~ 484 (709)
++.|+++||.|+++|+|+|++++|||+++++++|.++++||++|++++|+|+++|+++ ++.++ +.|.+ .+ ..
T Consensus 395 ee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~---~~--~~ 469 (831)
T TIGR02412 395 EEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES---SG--PP 469 (831)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec---CC--CC
Confidence 9999999999999999999999999999999999999999999999999999999875 34444 22321 11 12
Q ss_pred CeeEEEEEEEECccceee-----eEEeecceeEEEecccccccccCCCCCCceEEeccCceEEEEEEcCHHHHHHHHHHH
Q 005189 485 GQWIVPITLCCGSYDVCK-----NFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAI 559 (709)
Q Consensus 485 ~~w~iPl~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~l 559 (709)
..|.|||.+....+.... .+.+...... ++... ..... +||++|.++.|||||+||+++|+.|+++|
T Consensus 470 ~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~--~~v~~N~~~~gyyrv~yd~~~~~~l~~~l 541 (831)
T TIGR02412 470 RPHRIAIGLYDLDRDDLRRTTLVPLTISGERTA--VPQLV----GKRAP--ALVLLNDDDLTYAKVRLDPTSFDTVLAAL 541 (831)
T ss_pred CCeeEEEeeeecCCCcceeeeEEEEEEecCcee--ehhhc----CCCCC--CEEEEeCCCcEEEEEECCHHHHHHHHHHh
Confidence 459999998654332111 1333332221 22110 01233 79999999999999999999999999998
Q ss_pred HhcCCChhhHHHHHHHHHHHHHhccCCHHHHHHHH-HhccCCCcHHHHHHHHHHHH-HHHHHHhccChHHHHHHHHHHHH
Q 005189 560 EMKQLSETDRFGILDDHFALCMARQQTLTSLLTLM-ASYSEETEYTVLSNLITISY-KIGRIAADARPELLDYLKQFFIS 637 (709)
Q Consensus 560 ~~~~~~~~~r~~li~D~~~la~~g~~~~~~~~~l~-~~l~~E~~~~~w~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~ 637 (709)
.. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|+++.||..++..+. .+..++.. ++.+..+++++.+
T Consensus 542 ~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ 618 (831)
T TIGR02412 542 SK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAP--IADRPALLAVAAL 618 (831)
T ss_pred hh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 53 33799999999999999999999999999965 89999999999999999999 88888743 5678899999988
Q ss_pred HHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCcccceeEEE
Q 005189 638 LFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKVECE 707 (709)
Q Consensus 638 l~~~~~~~lg~~~~~~~~~~~~~~r~~i~~~ac~~~~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~v~~ 707 (709)
++.+.... ++++....++. +..+||..|+++|++.++++|+.|+++ ..||||+|.+|++
T Consensus 619 ~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~dlr~~v~~ 677 (831)
T TIGR02412 619 ACRSLRRA-------MESGPDFQLRW-LRALALTATDPDSLRRLLSLLDGKIKG---LALDPDLRWRIIA 677 (831)
T ss_pred HHHHHHhc-------cCCCccHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCCCC---cccCHhHHHHHHH
Confidence 88864432 23223333333 555799999999999999999998754 3699999997764
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-86 Score=773.85 Aligned_cols=664 Identities=33% Similarity=0.529 Sum_probs=535.1
Q ss_pred cCCCCcee-ee--EEEEEEecCC--CCeEEEEEEEEEEE--ECCcCEEEEEecCceeeEEEeeeeccCCCccccCceEEE
Q 005189 9 RLPKFAVP-KR--YDIRLTPDLT--SCKFGGSVAIDVDV--VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL 81 (709)
Q Consensus 9 rLp~~v~p-~~--Y~l~l~~~~~--~~~~~G~v~I~~~~--~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~ 81 (709)
.++..+.| .+ |++.|+++.. ...|+|+++|++.. ..+...|+||+.+|+|.++.+++... .. ...+
T Consensus 12 ~~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~------~~-~~~~ 84 (859)
T COG0308 12 ALSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKAL------TA-WYRL 84 (859)
T ss_pred cccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccc------cc-cccc
Confidence 44455555 77 7777766554 48999999999987 33344499999999999999986321 11 2233
Q ss_pred ecCceEEEEEeCCC--C---CcceEEEEEEEEeeeC-CCCcceEEeeeccCCceeeeeecccCcCCCCceeeccCCCCCc
Q 005189 82 VEADEILVLEFAET--L---PTGMGVLAIGFEGVLN-DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK 155 (709)
Q Consensus 82 ~~~~~~l~i~l~~~--l---~~g~~~l~i~y~g~~~-~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~k 155 (709)
+. +.+.+....+ + .++.+.+.+.+++... +...|+|++.+.. ..+++||||+.+||+||||+|+|+.|
T Consensus 85 ~~--~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~D~P~~k 158 (859)
T COG0308 85 DG--DALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCIDEPDVK 158 (859)
T ss_pred cC--ccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecCCCCCCc
Confidence 33 3333333222 2 2346778888888777 6788999876543 56789999999999999999999999
Q ss_pred eEEEEEEEeCCCCeEeecCccceeee-cCCeEEEEEecCCCccceEEEEEEeeeEEEEeecC---CCeEEEEEEeCCccc
Q 005189 156 ATFKITLDVPSELVALSNMPVIDEKV-DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS---DGIKVRVYCQVGKAN 231 (709)
Q Consensus 156 a~f~l~i~~p~~~~aisn~~~~~~~~-~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~---~g~~v~v~~~~~~~~ 231 (709)
|+|+++|+.++++.++|||+.+.... .+++++++|..++||||||+|+++|+|...+.... +++++++|++++...
T Consensus 159 atf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~ 238 (859)
T COG0308 159 ATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLD 238 (859)
T ss_pred ceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchh
Confidence 99999999999999999999987643 35589999999999999999999999988775442 479999999998889
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHH
Q 005189 232 QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 311 (709)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaH 311 (709)
.++++++.+.++++||+++||+|||+++ ++|++|+|+.|||||||+++|++..++.++..++....++++.+|+||+||
T Consensus 239 ~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaH 317 (859)
T COG0308 239 RAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAH 317 (859)
T ss_pred hhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999998777777788999999999999
Q ss_pred HHhcCCCCccccchhHHhhhHHHHHHHHHHhhhCc-cchhHHHHHHHHHH-HhhccccCCCCceeeecCCcccccccccc
Q 005189 312 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTE-GLRLDGLAESHPIEVEVNHTGEIDEIFDA 389 (709)
Q Consensus 312 qWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~~~~~~pi~~~~~~~~~~~~~f~~ 389 (709)
|||||+||++||+++|||||||+|++....+.+++ .|..|..+...... ++..|+...+||+...+.++.+++..||.
T Consensus 318 qWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~ 397 (859)
T COG0308 318 QWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDA 397 (859)
T ss_pred hcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcch
Confidence 99999999999999999999999999999999999 88888888766554 78889999999999999999999999999
Q ss_pred eeecchhHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCceeEEEEEeCc-E
Q 005189 390 ISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEE-K 468 (709)
Q Consensus 390 i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~~-~ 468 (709)
++|.||++|+|||+..+|++.|++||+.|+++|++++++++|||+++++++|+|++.+|+.|+.|+|+|++.|+...+ .
T Consensus 398 i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~ 477 (859)
T COG0308 398 IVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDDF 477 (859)
T ss_pred hhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887 7
Q ss_pred EEEEEEeeecCCCCCCCeeEEEEEEEECccceeeeEEeecceeEEEecccccccccCCCCCCceEEeccCceEEEEEEcC
Q 005189 469 LELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYD 548 (709)
Q Consensus 469 ~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd 548 (709)
++++|+||...+......|.||+.+.....+......+.....++.+.... ..+- .-+++|....++|++.|+
T Consensus 478 ~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~y~ 550 (859)
T COG0308 478 FKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVG-----IPPF--PSLKVNDSAPVFYRVDYS 550 (859)
T ss_pred EEEEEEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEeccc-----CCcc--ceeeccCCccceEEEecC
Confidence 999999998777334458999999987754422224455555566665421 1111 368899999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhccCCHHHHHHHHHhccCCCcHHHHHH-HHH-HHHHHHHHHhccChH
Q 005189 549 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSN-LIT-ISYKIGRIAADARPE 626 (709)
Q Consensus 549 ~~~w~~l~~~l~~~~~~~~~r~~li~D~~~la~~g~~~~~~~~~l~~~l~~E~~~~~w~~-~~~-~l~~~~~~~~~~~~~ 626 (709)
.+.|..+++.. ..+...+|+.++.|..++.++|..+...+...+...-++....++.. ++. .+..+..... .+
T Consensus 551 ~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 625 (859)
T COG0308 551 DQSLSKLLQHD--PRLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSFAD---LE 625 (859)
T ss_pred HHHHHHHHhhh--hhhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchh---hh
Confidence 99998887763 37889999999999999999999999999988776555444444433 333 2222322211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCCccccee
Q 005189 627 LLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKV 704 (709)
Q Consensus 627 ~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~~r~~i~~~ac~~~~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~ 704 (709)
..+.......+...+.++++....++... ......+ ..+|...+..++..+..+|..+-.. ...++|++|..
T Consensus 626 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 697 (859)
T COG0308 626 --KFIDPDAIDQLRDALVRLGAEAVADDLLA-LYHIGAL-SQSLYEEDASLAALRALRNACLERL--EKQEDPELRSL 697 (859)
T ss_pred --hhcCHHHHHHHHHHHHHHHHHhhcchHHH-HHHhhhh-ccccccccHHHHHHHHHHHHHHhhc--ccccChhHHHH
Confidence 34556666777777777777764333222 2222222 6677778888998888888877543 23366776653
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=3.4e-84 Score=745.19 Aligned_cols=642 Identities=21% Similarity=0.293 Sum_probs=472.6
Q ss_pred CCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCcCEEEEEecCceeeEEEeeeeccCCCccccCceEEEecCceEEEE
Q 005189 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (709)
Q Consensus 11 p~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (709)
|..+...||+|+|+++++...++|+++|+++..++.+.|+||+.+|+|.+|.+++. .+. ...+..+++.++|
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~------~~~--~~~~~~~~~~L~I 75 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGK------PLA--AGDYQLDDETLTI 75 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCE------ecC--cceEEEcCCEEEE
Confidence 56688999999999999999999999999998777778999999999999999652 111 1235556678888
Q ss_pred EeCCCCCcceEEEEEEEEeee--CCCCcceEEeeeccCCceeeeeecccCcCCCCceeeccCCCCCceEEEEEEEeCCC-
Q 005189 91 EFAETLPTGMGVLAIGFEGVL--NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE- 167 (709)
Q Consensus 91 ~l~~~l~~g~~~l~i~y~g~~--~~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~~- 167 (709)
.. + ++.++|+|.|.+.. +.+..|+|++.+ +++|||||.+||++|||+|+|++||+|+++|++|++
T Consensus 76 ~~---~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~ 143 (863)
T TIGR02414 76 AS---V-PESFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKK 143 (863)
T ss_pred ee---C-CccEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCc
Confidence 74 2 25789999997644 456789998753 568999999999999999999999999999999986
Q ss_pred C-eEeecCcccee-eecCCeEEEEEecCCCccceEEEEEEeeeEEEEee----cCCCeEEEEEEeCCccchHHHHHHHHH
Q 005189 168 L-VALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNVAV 241 (709)
Q Consensus 168 ~-~aisn~~~~~~-~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~~~ 241 (709)
| +++|||+++.. ...+++++++|+.++|||+||+||++|+|+.++.. ...++++++|++|+..+.++++++.++
T Consensus 144 y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~ 223 (863)
T TIGR02414 144 YPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLK 223 (863)
T ss_pred ceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHH
Confidence 6 56899988765 33567888999999999999999999999988742 234689999999999889999999999
Q ss_pred HHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 005189 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTME 321 (709)
Q Consensus 242 ~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~ 321 (709)
++|++||++||.|||++|+++|++|+|..||||||||++|++..++.++...+...+..+..+||||+|||||||+||++
T Consensus 224 ~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~ 303 (863)
T TIGR02414 224 KAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCR 303 (863)
T ss_pred HHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeec
Confidence 99999999999999999999999999999999999999999999999887666667778899999999999999999999
Q ss_pred ccchhHHhhhHHHHHHHHHHhhhCccchhHHHHHH-HHH--HHhhccccCCCCceeeecCCcccccccccceeecchhHH
Q 005189 322 WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLD-ECT--EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 398 (709)
Q Consensus 322 ~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~v 398 (709)
||+++|||||||+|++..+.....+... ..+.. ... ..+..|+...+||+.. .+..+++..|+.++|.||++|
T Consensus 304 ~W~~LWLnEGfAty~e~~~~~~~~~~~~--~~~~~~~~lr~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~v 379 (863)
T TIGR02414 304 DWFQLSLKEGLTVFRDQEFSADMTSRAV--KRIEDVRLLRAHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEV 379 (863)
T ss_pred chhhhhhhhhHHHHHHHHHHHHhhhHHH--HHHHHHHHHHhhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHH
Confidence 9999999999999999766555443211 01110 011 2344577777888754 234566788999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCceeEEEEEeC----c--EEEEE
Q 005189 399 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELE 472 (709)
Q Consensus 399 l~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~----~--~~~l~ 472 (709)
+|||+..||++.|+++|+.|+++|++++++++|||+++++++|.|+++|+ +|+.|+|+|+|+|+++. + +++++
T Consensus 380 LrML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~ 458 (863)
T TIGR02414 380 IRMLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVR 458 (863)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999985 89999999999999863 2 45666
Q ss_pred EEeeecCCCCCCCeeEEEEEEEEC--ccce-----------eeeEEeecceeEEEecccccccccCCCCCCceEEeccCc
Q 005189 473 QSQFLSSGSPGDGQWIVPITLCCG--SYDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQ 539 (709)
Q Consensus 473 Q~rf~~~~~~~~~~w~iPl~~~~~--~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~ 539 (709)
|.+....+......|.|||.+..- ++.. ...+.++.+++++.++.+. .. ..+.++.+.
T Consensus 459 Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~-------~~--p~~sl~r~f 529 (863)
T TIGR02414 459 QSTPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIA-------EK--PVPSLLRGF 529 (863)
T ss_pred EeCCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCC-------CC--CeeeecCCC
Confidence 654322223344589999999653 2221 1225677788889888642 22 357788889
Q ss_pred eEEEEEEcCHHHHHHHHHHHHhcCCChhhH---HHHHH-----HHHHHHHhcc-C-CHHHHHHHHHhccCCC--cHHHHH
Q 005189 540 TGFYRVKYDKDLAARLGYAIEMKQLSETDR---FGILD-----DHFALCMARQ-Q-TLTSLLTLMASYSEET--EYTVLS 607 (709)
Q Consensus 540 ~gyyRV~Yd~~~w~~l~~~l~~~~~~~~~r---~~li~-----D~~~la~~g~-~-~~~~~~~l~~~l~~E~--~~~~w~ 607 (709)
+.+-++.|+... +.|+..+..+ -..-+| +|-+- +...-...|. + --..+++.+..+-.+. +...-.
T Consensus 530 sapv~l~~~~~~-~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~a 607 (863)
T TIGR02414 530 SAPVNLEYPYSD-EDLLLLLAHD-SDPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALGKLLNDPHLDAAFKA 607 (863)
T ss_pred CceEEEeCCCCH-HHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 999998776432 2222222211 112222 11111 1111011232 1 1234556665543222 332222
Q ss_pred HHH--HHHHHHHHHHhccChHHHHHHHHHH--------HHHHHHHHHHcCCCC---CCCCChHHHHHHHHHHHHHHhcCC
Q 005189 608 NLI--TISYKIGRIAADARPELLDYLKQFF--------ISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGH 674 (709)
Q Consensus 608 ~~~--~~l~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~lg~~~---~~~~~~~~~~~r~~i~~~ac~~~~ 674 (709)
.++ .....|...+..-+|+....-++++ +..+..+|+++.-.. ...+.--.+.||+.++.++|..+.
T Consensus 608 ~~l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~ 687 (863)
T TIGR02414 608 LLLALPSEAYLAELMENIDPDALHAAREFLRAAIARQLADDLLRLYDALQENGPYSVDPAAAGRRALRNACLSYLSAADD 687 (863)
T ss_pred HHhcCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 221 1112333333222233333333333 344444555542111 111223458999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005189 675 KETLNEASKRFHAF 688 (709)
Q Consensus 675 ~~c~~~a~~~f~~~ 688 (709)
++..+.|.+.|++-
T Consensus 688 ~~~~~~~~~~~~~a 701 (863)
T TIGR02414 688 AEIRNLALEQFKSA 701 (863)
T ss_pred hhHHHHHHHHHHhC
Confidence 99999999988853
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=2.8e-83 Score=739.96 Aligned_cols=645 Identities=22% Similarity=0.302 Sum_probs=468.8
Q ss_pred CCCCceeeeEEEEEEecCCCCeEEEEEEEEEEE-ECCcCEEEEEecCceeeEEEeeeeccCCCccccCceEEEecCceEE
Q 005189 10 LPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEIL 88 (709)
Q Consensus 10 Lp~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~~~~~~~l 88 (709)
-|..+...||+|+|+++++...++|+++|+... .++.+.|+||+.+|+|.+|.+++. .+.+. .+..+++.|
T Consensus 15 ~~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~------~~~~~--~~~~~~~~L 86 (875)
T PRK14015 15 RPPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQ------PLAPS--AYELDEEGL 86 (875)
T ss_pred CCCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCE------EcCcc--ceEEcCCEE
Confidence 355688899999999999999999999999876 456789999999999999998753 11111 344556788
Q ss_pred EEEeCCCCCcceEEEEEEEEeeeC--CCCcceEEeeeccCCceeeeeecccCcCCCCceeeccCCCCCceEEEEEEEeCC
Q 005189 89 VLEFAETLPTGMGVLAIGFEGVLN--DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPS 166 (709)
Q Consensus 89 ~i~l~~~l~~g~~~l~i~y~g~~~--~~~~G~y~~~y~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~ 166 (709)
+|.. + ++.++|+|.|++... ....|+|++.+ +++|||||.+||+||||+|+|+.||+|+++|++|+
T Consensus 87 ~I~~---l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~ 154 (875)
T PRK14015 87 TIEN---L-PDRFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADK 154 (875)
T ss_pred EEec---C-CccEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCCCCCCeeEEEEEEEcc
Confidence 8872 3 235889999987654 44679998642 56899999999999999999999999999999999
Q ss_pred -CC-eEeecCccceee-ecCCeEEEEEecCCCccceEEEEEEeeeEEEEee--c--CCCeEEEEEEeCCccchHHHHHHH
Q 005189 167 -EL-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH--T--SDGIKVRVYCQVGKANQGKFALNV 239 (709)
Q Consensus 167 -~~-~aisn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~--~--~~g~~v~v~~~~~~~~~~~~~l~~ 239 (709)
.| +++|||++++.. ..+++++++|+.++|||+||+||++|+|+.++.. + .+++++++|++|+..+.++++++.
T Consensus 155 ~~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~ 234 (875)
T PRK14015 155 AKYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDS 234 (875)
T ss_pred ccCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHH
Confidence 48 689999988764 4677889999999999999999999999987642 2 235999999999999899999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005189 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (709)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (709)
++++|++||++||.|||++|+++|++|+|..||||||||++|++..++.++...+...+..+..+||||+|||||||+||
T Consensus 235 ~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT 314 (875)
T PRK14015 235 LKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVT 314 (875)
T ss_pred HHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcce
Confidence 99999999999999999999999999999999999999999999989888876666667778999999999999999999
Q ss_pred ccccchhHHhhhHHHHHHHHHHhhhCcc-chhHHHHHHHHHHHhhccccCCCCceeeecCCcccccccccceeecchhHH
Q 005189 320 MEWWTHLWLNEGFATWVSYLAADSLFPE-WKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 398 (709)
Q Consensus 320 ~~~w~d~WLnEGfA~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg~~v 398 (709)
++||+++|||||||+|++..+.....+. +.............+..|+...+||+... +..+++..|+.++|.||++|
T Consensus 315 ~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p~--~~~~i~~~f~~~~Y~KGA~v 392 (875)
T PRK14015 315 CRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRPD--SYIEINNFYTATVYEKGAEV 392 (875)
T ss_pred ecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCCc--chhhHHhcccchhhhHHHHH
Confidence 9999999999999999987765554321 11110000000112444666667777532 33466778999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCCHHHHHHHhhcCCCceeEEEEEeC----c--EEEEE
Q 005189 399 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELE 472 (709)
Q Consensus 399 l~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~----~--~~~l~ 472 (709)
||||+..||++.|+++|+.|+++|++++++++||++++++++|.|+.+|+ +|++|+|+|+++|+++. + +++++
T Consensus 393 LrMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~ 471 (875)
T PRK14015 393 IRMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLS 471 (875)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999986 89999999999999863 3 35666
Q ss_pred EEeeecCCCCCCCeeEEEEEEEECc--cce----------eeeEEeecceeEEEecccccccccCCCCCCceEEeccCce
Q 005189 473 QSQFLSSGSPGDGQWIVPITLCCGS--YDV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 540 (709)
Q Consensus 473 Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 540 (709)
|.+....+......|.|||.+..-+ +.. ...+.++.+++++.++.+. .. ..+.++.+.+
T Consensus 472 Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~-------~~--p~~s~~r~fs 542 (875)
T PRK14015 472 QSTPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVA-------ER--PVPSLLRGFS 542 (875)
T ss_pred EeCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCC-------CC--ceEEecCCCC
Confidence 6543222333445899999996422 221 1235677788889888642 12 3578888888
Q ss_pred EEEEEEcCHHHHHHHHHHHHh--cCCChhhHHHHH-HHHH-HHHHh-cc-CC-HHHHHHHHHhccCC--CcHHHHHHHHH
Q 005189 541 GFYRVKYDKDLAARLGYAIEM--KQLSETDRFGIL-DDHF-ALCMA-RQ-QT-LTSLLTLMASYSEE--TEYTVLSNLIT 611 (709)
Q Consensus 541 gyyRV~Yd~~~w~~l~~~l~~--~~~~~~~r~~li-~D~~-~la~~-g~-~~-~~~~~~l~~~l~~E--~~~~~w~~~~~ 611 (709)
.+-++.|+... +.|+..+.. +.+..-+-+|-| .... .++.. |. +. -..+++.+..+-.+ -+...-..++.
T Consensus 543 apv~~~~~~~~-~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~ 621 (875)
T PRK14015 543 APVKLEYDYSD-EDLLFLMAHDSDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDESLDPAFAAELLT 621 (875)
T ss_pred CcEEEeCCCCH-HHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHcc
Confidence 88888877432 223333321 122211112211 1111 11111 22 11 23455555553222 23322222211
Q ss_pred --HHHHHHHHHhccChHHHHHHHHHHH--------HHHHHHHHHcCCCC---CCCCChHHHHHHHHHHHHHHhcCCHHHH
Q 005189 612 --ISYKIGRIAADARPELLDYLKQFFI--------SLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGHKETL 678 (709)
Q Consensus 612 --~l~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~lg~~~---~~~~~~~~~~~r~~i~~~ac~~~~~~c~ 678 (709)
....|...+..-+|+....-++.++ ..+..+|+++--.. ...+.--.+.||+.++.++|..+.++..
T Consensus 622 lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~ 701 (875)
T PRK14015 622 LPSEAELAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAADDEEAA 701 (875)
T ss_pred CCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHH
Confidence 1123333322222333333333333 33444555542111 0122334589999999999999998888
Q ss_pred HHHHHHHHH
Q 005189 679 NEASKRFHA 687 (709)
Q Consensus 679 ~~a~~~f~~ 687 (709)
+.|.+.|++
T Consensus 702 ~~~~~~~~~ 710 (875)
T PRK14015 702 ELAEAQFDQ 710 (875)
T ss_pred HHHHHHHhh
Confidence 888888884
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=1e-77 Score=674.94 Aligned_cols=427 Identities=24% Similarity=0.395 Sum_probs=349.1
Q ss_pred cCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECC-cCEEEEEecCceeeEEEeeeeccCCCccccCceEEE----ec
Q 005189 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGD-TKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL----VE 83 (709)
Q Consensus 9 rLp~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~-~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~----~~ 83 (709)
.=|..++|.||+|+|++|+++..|+|+|+|++++.++ ++.|+||+.+|+|.+|.+++. ...+.. +.
T Consensus 6 sn~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~---------~~~~~~~~~~~~ 76 (601)
T TIGR02411 6 SNYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGL---------PADFAIGERKEP 76 (601)
T ss_pred cCCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCc---------ccceEeccccCC
Confidence 3477899999999999999999999999999999765 588999999999999988652 112221 23
Q ss_pred CceEEEEEeCCCCCcc-eEEEEEEEEeeeCCCCcceEEeeec-cCCceeeeeecccCcCCCCceeeccCCCCCceEEEEE
Q 005189 84 ADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYE-LNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKIT 161 (709)
Q Consensus 84 ~~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~-~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l~ 161 (709)
.++.|.|.+++++.+| .++|+|.|+|..+ ..|++...+. .+|..+++++|||||.+||+||||||+|++||+|+++
T Consensus 77 ~g~~L~I~l~~~l~~g~~~~l~I~Y~~~~~--~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~ 154 (601)
T TIGR02411 77 LGSPLTISLPIATSKNKELVLNISFSTTPK--CTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAE 154 (601)
T ss_pred CCCeEEEEeCCccCCCceEEEEEEEeecCC--CceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEE
Confidence 4678999999999999 8999999999753 3466544332 3567778889999999999999999999999999999
Q ss_pred EEeCCCCeEeecCccceeeecCCeEEEEEecCCCccceEEEEEEeeeEEEEeecCCCeEEEEEEeCCccchHHHHHH-HH
Q 005189 162 LDVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VA 240 (709)
Q Consensus 162 i~~p~~~~aisn~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~ 240 (709)
|++| +.|++||..+.+.. ++..+++|+.++|||+||+||+||+|+..+ .|.++++|++|+..+.+++++. .+
T Consensus 155 I~~P--~~av~sg~~~~~~~-~~~~~~~F~~t~pmptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~ 227 (601)
T TIGR02411 155 VESP--LPVLMSGIPDGETS-NDPGKYLFKQKVPIPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHDT 227 (601)
T ss_pred EeeC--cceeccCCcccccc-CCCceEEEEeCCCcchhhheeeeccceecc----cCCceEEEccchhHHHHHHHHHHhH
Confidence 9999 88887776554332 345678999999999999999999998654 3678999999998888888888 89
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005189 241 VKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (709)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~kld~v~~-p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (709)
.++++++|+++| |||++|+|+|++ |+|+.||||||| ++|.+..++.+.. ....+||||||||||||+||
T Consensus 228 ~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d~--------s~~~viaHElAHqWfGNlVT 297 (601)
T TIGR02411 228 ENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGDR--------SNVDVIAHELAHSWSGNLVT 297 (601)
T ss_pred HHHHHHHHHhCC-CCcCccceEEEecCccccccccccc-ceeeccccccCCh--------hhhhhHHHHHHhhccCceee
Confidence 999999999877 999999999987 789999999999 5677776765432 23579999999999999999
Q ss_pred ccccchhHHhhhHHHHHHHHHHhhhCccchhH-HHHHH--HHHHHhhccccCCCCceeeecCCcc--cccccccceeecc
Q 005189 320 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIW-TQFLD--ECTEGLRLDGLAESHPIEVEVNHTG--EIDEIFDAISYRK 394 (709)
Q Consensus 320 ~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~d~~~~~~pi~~~~~~~~--~~~~~f~~i~Y~K 394 (709)
++||+|+|||||||+|++.+++++.+|++... ..+.. .....+ +.+...+|+...+.+.. +++..|+.++|.|
T Consensus 298 ~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~K 375 (601)
T TIGR02411 298 NCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGEDPEYTKLVVDLKDNDPDDAFSSVPYEK 375 (601)
T ss_pred cCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcCCCCCCcccccCCCCChhhhccccchhh
Confidence 99999999999999999999999999986431 11111 111122 22333445444333322 5678899999999
Q ss_pred hhHHHHHHHHhhC-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcc-----CCCHHHH-HHHhhcCCCceeEEEEEe
Q 005189 395 GASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----GEPVNKL-MNSWTKQKGYPVISVKVK 465 (709)
Q Consensus 395 g~~vl~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~s-----g~~l~~~-~~~W~~~~G~P~l~v~~~ 465 (709)
|+++|+||+..|| ++.|+++||.|+++|+|++++++||++++.++. +.+++.+ |+.|++++|+|.+.++.+
T Consensus 376 Ga~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 376 GFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 9999999999999 999999999999999999999999999998763 2456666 899999999999876643
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=1.4e-75 Score=638.98 Aligned_cols=385 Identities=46% Similarity=0.823 Sum_probs=342.1
Q ss_pred cCCCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCcCEEEEEecCceeeEEEeeeeccCCCccccCceEEEecCceEE
Q 005189 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEIL 88 (709)
Q Consensus 9 rLp~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~~~~~~~~~~~l 88 (709)
|||+.++|.||+|.|++++++.+|+|+++|++++.++++.|+||+.+++|.++.+.+..... ......+.++.+++.+
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~--~~~~~~~~~~~~~~~l 78 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSS--EYKSSPFEYDDENEKL 78 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSC--TECCEEEEEECCBTEE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccc--cccccceeecccccee
Confidence 89999999999999999999999999999999999999999999999999999997643211 1122237788888899
Q ss_pred EEEeCCCCCcc-eEEEEEEEEeeeCCCCcceEEeeecc--CCceeeeeecccCcCCCCceeeccCCCCCceEEEEEEEeC
Q 005189 89 VLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL--NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVP 165 (709)
Q Consensus 89 ~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~--~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p 165 (709)
.|.+++++.+| .++|+|.|+|.++++..|+|++.|.+ ++...++++||+||.+||+||||||+|.+||+|+++|++|
T Consensus 79 ~I~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p 158 (390)
T PF01433_consen 79 TITLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHP 158 (390)
T ss_dssp EEEEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEE
T ss_pred ehhhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeecc
Confidence 99999999999 79999999999999999999999975 6788899999999999999999999999999999999999
Q ss_pred CCCeEeecCccceee-ecCCeEEEEEecCCCccceEEEEEEeeeEEEEeecCCCeEEEEEEeCCccchHHHHHHHHHHHH
Q 005189 166 SELVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTL 244 (709)
Q Consensus 166 ~~~~aisn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~~~~l 244 (709)
++++|+|||++.+.. .++++++++|..++|||+|++||+||+|..++....+|+++++|++|+..+..+++++.+.+++
T Consensus 159 ~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 238 (390)
T PF01433_consen 159 KDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKAL 238 (390)
T ss_dssp TTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHH
T ss_pred ccceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHH
Confidence 999999999998874 4457999999999999999999999999998866666799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 005189 245 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (709)
Q Consensus 245 ~~~e~~fg~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (709)
++|+++||+|||++|+++|++|+|..|||||||+|+|++..++++++.++...+..+..+||||+|||||||+||++||+
T Consensus 239 ~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~ 318 (390)
T PF01433_consen 239 EYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWS 318 (390)
T ss_dssp HHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGG
T ss_pred HHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccch
Confidence 99999999999999999999999999999999999999999999998888888889999999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHHhhhCccchhHHHHHHHHH-HHhhccccCCCCceeeecCCcccccccccceeecch
Q 005189 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKG 395 (709)
Q Consensus 325 d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~i~Y~Kg 395 (709)
|+||+||||+|++++++++.+|++.++..+..+.+ .++..|+...++|+..++.++.++...|+.++|.||
T Consensus 319 d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 319 DLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 99999999999999999999999888888877665 678999999999999888889999999999999998
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1e-55 Score=458.19 Aligned_cols=430 Identities=26% Similarity=0.394 Sum_probs=339.4
Q ss_pred CCCceeeeEEEEEEecCCCCeEEEEEEEEEEEECCcCEEEEEecCceeeEEEeeeeccCCCccccCc-eEEEecCceEEE
Q 005189 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPT-KVELVEADEILV 89 (709)
Q Consensus 11 p~~v~p~~Y~l~l~~~~~~~~~~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~v~~~~~~~~~~~~~~-~~~~~~~~~~l~ 89 (709)
+..+...|++|++.+|++...++|+|.+++++..+...|.|+.++|.|.+|++++.+. ..... .-.+....+.+.
T Consensus 13 ~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~----~~~i~~~~~~~g~~~~~~ 88 (613)
T KOG1047|consen 13 YRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEP----PFRIGFRQPFLGSGQKLV 88 (613)
T ss_pred hhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCC----CCccCcccCCCCCceEEE
Confidence 4556789999999999999999999999999877766799999999999999976421 11111 112223334455
Q ss_pred EEeCCCCCcc-eEEEEEEEEeeeCCCCcceEEeee-ccCCceeeeeecccCcCCCCceeeccCCCCCceEEEEEEEeCCC
Q 005189 90 LEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE 167 (709)
Q Consensus 90 i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y-~~~g~~~~~~~t~~ep~~Ar~~fPc~DeP~~ka~f~l~i~~p~~ 167 (709)
+..+.+ ++| ...|.|.|.... +..++-.-.. ...|+++.|..+|+|..+||.+|||+|.|+.|.||+..|.+|.+
T Consensus 89 l~~~~~-~a~~~~~l~i~y~Ts~--~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~ 165 (613)
T KOG1047|consen 89 LPAPSS-KAGERLQLLIWYETSP--SATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMG 165 (613)
T ss_pred eccccc-cccCceEEEEEEeccC--CcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCc
Confidence 554433 355 899999998653 2344533222 23477888999999999999999999999999999999999999
Q ss_pred CeEeecCccceee-ecCCeEEEEEecCCCccceEEEEEEeeeEEEEeecCCCeEEEEEEeCCccchHHHHHH-HHHHHHH
Q 005189 168 LVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VAVKTLE 245 (709)
Q Consensus 168 ~~aisn~~~~~~~-~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~~~~l~ 245 (709)
+.+++++-..++. ...++..++|....|+|+||+||++|+....+ -|.+-+||+.|...+.+++-+. .+.++|+
T Consensus 166 l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e----IgpRs~VwaEp~~~~a~~~ef~~~~e~~L~ 241 (613)
T KOG1047|consen 166 LTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE----IGPRSRVWAEPCLLDACQEEFAGETEDFLK 241 (613)
T ss_pred ceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc----cCCccceecchhhhHHHHHHHHhhhHHHHH
Confidence 9999888664443 33447789999999999999999999987655 3667899999998888877776 8999999
Q ss_pred HHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 005189 246 LYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (709)
Q Consensus 246 ~~e~~fg~~yP~~kld~v~~-p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (709)
.-|+.+| ||++.+||++++ |.|++|||||+.|.+.... +|-... ....+|||||||.||||+||...|.
T Consensus 242 ~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr--------sl~~vIaHEIAHSWtGNlVTN~sWe 311 (613)
T KOG1047|consen 242 AAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR--------SLVDVIAHEIAHSWTGNLVTNASWE 311 (613)
T ss_pred HHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc--------chhhHHHHHhhhhhcccccccCccc
Confidence 9999999 999999999998 5899999999988777766 555443 2578999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHHhhhCccchhHHHHHHHHHH-Hh--hccccCCCCceeeecCCc--ccccccccceeecchhHHH
Q 005189 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTE-GL--RLDGLAESHPIEVEVNHT--GEIDEIFDAISYRKGASVI 399 (709)
Q Consensus 325 d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~d~~~~~~pi~~~~~~~--~~~~~~f~~i~Y~Kg~~vl 399 (709)
+.||||||++|++..++..++|+... +|..-... .+ ..|.+...++...-+.+. -+.+..|+.+.|.||..+|
T Consensus 312 hfWLNEGfTvylErrI~g~~~g~~~~--~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll 389 (613)
T KOG1047|consen 312 HFWLNEGFTVYLERRIVGRLYGEAYR--QFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYEKGFALL 389 (613)
T ss_pred hhhhcccchhhhhhhhhhhhcchhHH--HHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchhhhhHHH
Confidence 99999999999999999999987432 22211111 11 235555566654332221 3457789999999999999
Q ss_pred HHHHHhhC-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCC----CH--HHHHHHhhcCCCceeEEEE
Q 005189 400 RMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PV--NKLMNSWTKQKGYPVISVK 463 (709)
Q Consensus 400 ~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~----~l--~~~~~~W~~~~G~P~l~v~ 463 (709)
+.|++.+| ++.|...||.|+++++++.+.++||.+.|-+.... ++ +--++.|++.+|+|...-.
T Consensus 390 ~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~ 460 (613)
T KOG1047|consen 390 FYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPN 460 (613)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCC
Confidence 99999999 77899999999999999999999999999876532 22 2347999999999985443
No 9
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=1.5e-36 Score=336.91 Aligned_cols=428 Identities=19% Similarity=0.263 Sum_probs=315.3
Q ss_pred eeeEEEEEE-ecCCCCeEEEEEEEEEEE-ECCcCEEEEEecCceeeEEEeeeeccCC--------------Cc-cc----
Q 005189 16 PKRYDIRLT-PDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVS--------------SK-AL---- 74 (709)
Q Consensus 16 p~~Y~l~l~-~~~~~~~~~G~v~I~~~~-~~~~~~i~L~~~~l~i~~v~v~~~~~~~--------------~~-~~---- 74 (709)
-.|..+.|. +|+.+.++.|.++|++.. ..+...|.||++++.|.+|.|++..+.. .+ ..
T Consensus 27 ~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred ceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 589999998 999999999999999997 4558999999999999999998752210 00 00
Q ss_pred -----cCceEEEecCceEEEEEeCCCCCc-c----eEEEEEEEEeeeCCCCcceEEeeeccCCceeeeeecccC-cCCCC
Q 005189 75 -----EPTKVELVEADEILVLEFAETLPT-G----MGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFE-PADAR 143 (709)
Q Consensus 75 -----~~~~~~~~~~~~~l~i~l~~~l~~-g----~~~l~i~y~g~~~~~~~G~y~~~y~~~g~~~~~~~t~~e-p~~Ar 143 (709)
...-...+..++.|.|.++++++. | ..+++|+|+..-+..+--|++..|........+.++..+ +.+||
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar 186 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSAR 186 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccc
Confidence 001112344568899999988543 2 456778898755544445777655333333334444444 56799
Q ss_pred ceeeccCCCCCceEEEEEEEeCCCCeEeecCcccee--eecCCeEEEEEecCCCccceEEEEEEeeeEEEEeecCCCeEE
Q 005189 144 RCFPCWDEPACKATFKITLDVPSELVALSNMPVIDE--KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKV 221 (709)
Q Consensus 144 ~~fPc~DeP~~ka~f~l~i~~p~~~~aisn~~~~~~--~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v 221 (709)
.||||.|.+..+++|++++++|+..+++++|.+... ..+-..++++|.-+.|+++..+||+||+|+... ...++++
T Consensus 187 ~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~--~P~~~~i 264 (1180)
T KOG1932|consen 187 SWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYV--EPSMIDI 264 (1180)
T ss_pred eEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccC--CCccCcc
Confidence 999999999999999999999999999999998875 223347899999999999999999999999873 2347899
Q ss_pred EEEEeCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCCcHHHHHHH
Q 005189 222 RVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRV 301 (709)
Q Consensus 222 ~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~ 301 (709)
..|+.|+.....+...-...++++|||+++|..|||+.+.+|++|.-..--|....|.+++.+ +||..+.. +.....
T Consensus 265 ~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~iI--Dq~~~t 341 (1180)
T KOG1932|consen 265 THFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNII--DQTFLT 341 (1180)
T ss_pred eeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhhh--hHHHHH
Confidence 999999998888888888999999999999988999999999999877777777788888877 88887644 334446
Q ss_pred HHHHHHHHHHHHhcCCCCccccchhHHhhhHHHHHHHHHHhhhCccchhHHHHHHHHHHHhhcccc----CCCCceeeec
Q 005189 302 ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGL----AESHPIEVEV 377 (709)
Q Consensus 302 ~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~pi~~~~ 377 (709)
.+.+|-.||.||||-.+++..|+|.||.+|+|.|+..+++++++|+.++..+...+.-..+.+|-. ..+.|+....
T Consensus 342 r~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~ 421 (1180)
T KOG1932|consen 342 RRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSM 421 (1180)
T ss_pred HHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcch
Confidence 788999999999999999999999999999999999999999999876543333322222333321 1122332211
Q ss_pred C----C----------cccccccccceeecchhHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCC
Q 005189 378 N----H----------TGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEP 443 (709)
Q Consensus 378 ~----~----------~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~ 443 (709)
. . ....+..|..-.-.|+..+.+|+++.+|.+-|.+..+..+. .++...
T Consensus 422 k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~-----------------~~~~~~ 484 (1180)
T KOG1932|consen 422 KFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLE-----------------LASKML 484 (1180)
T ss_pred hhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH-----------------hhhhhH
Confidence 1 0 00001111111124777778888888887776665554443 233333
Q ss_pred HHHHHHHhhcCCCceeEEEEEe
Q 005189 444 VNKLMNSWTKQKGYPVISVKVK 465 (709)
Q Consensus 444 l~~~~~~W~~~~G~P~l~v~~~ 465 (709)
++.|++.|++..|+|.+.+...
T Consensus 485 ~k~~~~~Wv~~~g~~~~r~~~~ 506 (1180)
T KOG1932|consen 485 LKSFFQTWVYGLGVPILRLGQR 506 (1180)
T ss_pred HHHHHHHHHhccCCeeEEEEEE
Confidence 5788889999999998887753
No 10
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=99.97 E-value=3.9e-30 Score=273.64 Aligned_cols=175 Identities=34% Similarity=0.559 Sum_probs=150.8
Q ss_pred eEEeccCceEEEEEEcCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhccCCHHHHHHHHHhc-cCCCcHHHHHHHH
Q 005189 532 WIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY-SEETEYTVLSNLI 610 (709)
Q Consensus 532 wi~~N~~~~gyyRV~Yd~~~w~~l~~~l~~~~~~~~~r~~li~D~~~la~~g~~~~~~~~~l~~~l-~~E~~~~~w~~~~ 610 (709)
||++|.+++|||||+||+++|+.|+++|..+.|++.+|++|++|+|+++++|.++++.+|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 999999999999999999999999999987779999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 005189 611 TISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA 690 (709)
Q Consensus 611 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~~r~~i~~~ac~~~~~~c~~~a~~~f~~~~~ 690 (709)
..|..+.+.+...++.....|++|+++++.++++++||+..+++++....+|..++.+|| |+++|+++|.++|++|++
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhc
Confidence 999999977763334444459999999999999999999988899999999999999999 999999999999999998
Q ss_pred CCCC--CCCCcccceeEEEe
Q 005189 691 DRTT--PLLPPDIRKVECEF 708 (709)
Q Consensus 691 ~~~~--~~i~~~lr~~v~~~ 708 (709)
++.. ..||||+|.+|+|+
T Consensus 159 ~~~~~~~~i~~dlr~~v~~~ 178 (324)
T PF11838_consen 159 GNDSPESSIPPDLRWAVYCA 178 (324)
T ss_dssp TTT-TTSTS-HHHHHHHHHH
T ss_pred CCcccccccchHHHHHHHHH
Confidence 7443 37999999987763
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.36 E-value=5.5e-11 Score=125.45 Aligned_cols=300 Identities=15% Similarity=0.187 Sum_probs=180.7
Q ss_pred EEEEEEeCCCCeEeecCccceeeecCCeEEEE---EecCCCccceEEEEEEeeeEEEEeecCCCeEEEEEEeCCc-cchH
Q 005189 158 FKITLDVPSELVALSNMPVIDEKVDGNMKTVS---YQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGK-ANQG 233 (709)
Q Consensus 158 f~l~i~~p~~~~aisn~~~~~~~~~~~~~~~~---f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~-~~~~ 233 (709)
+.+++.-|+ |.+.+..+.+.+.... ..-.. |..+|.+ +|.|...+- ...|.+.++-.+.+. ..+.
T Consensus 115 ~~~~~~~p~-wriAT~L~~~~~~~~~-F~aa~~~~lvDSPve--------~g~~~~~~~-e~~g~ph~~~~~g~~p~~d~ 183 (558)
T COG3975 115 LELTVIPPE-WRIATALPPVATGRFV-FYAASYEELVDSPVE--------AGLFELLDF-EVTGAPHTIALRGELPNFDK 183 (558)
T ss_pred eEEEecCcc-ceeeecCCccccCCce-eecccHHHhcCChhh--------ccccceeee-eccCCceeEEEeeccccccH
Confidence 555555554 8887777655421000 11111 2233332 343333321 122344444333222 2355
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCccEEEe-cCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHH
Q 005189 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (709)
Q Consensus 234 ~~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~-p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (709)
+...+.++++++.-.+.|| +-|+.++.+++. .+-.+||||+-.-.........+ ++....+....+++||..|-
T Consensus 184 ~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~~----~~~~ky~~~l~llsHEyfH~ 258 (558)
T COG3975 184 ERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFGF----TDQDKYQDLLGLLSHEYFHA 258 (558)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceeccccccccccccc----cchhHHHHHHHHHHHHHHHh
Confidence 6677888999999899999 789999887764 55667899985433322222221 11222466789999999999
Q ss_pred HhcCCCCccc-c----------chhHHhhhHHHHHHHHHHhhhCccchhHHHHHH---HHHHHhhccccCCCCceeeecC
Q 005189 313 WFGNLVTMEW-W----------THLWLNEGFATWVSYLAADSLFPEWKIWTQFLD---ECTEGLRLDGLAESHPIEVEVN 378 (709)
Q Consensus 313 WfGnlVt~~~-w----------~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~pi~~~~~ 378 (709)
|-+-.+.+.- | .-+|+.|||++|+..+..-.. +-. ..++|+. +...++..-.....+|+.....
T Consensus 259 WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRs-gl~-~~~~~l~~la~tl~~~~~~~gRl~~~laEsS~ 336 (558)
T COG3975 259 WNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRS-GLI-SLETYLNYLAKTLARYLNTPGRLRQSLAESSF 336 (558)
T ss_pred ccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHh-ccC-cHHHHHHHHHHHHHHHhcCCceeccccccccc
Confidence 9988887754 2 459999999999997754332 110 1123332 2223332222222233332211
Q ss_pred Cc-----ccccccccce--eecchhHHHHHHHHhh-----CHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHhccCCCH
Q 005189 379 HT-----GEIDEIFDAI--SYRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNAKTEDLWAALEEGSGEPV 444 (709)
Q Consensus 379 ~~-----~~~~~~f~~i--~Y~Kg~~vl~mL~~~l-----G~~~F~~~l~~yl~~~~~--~~~~~~dl~~~l~~~sg~~l 444 (709)
++ ..-...-+.+ .|.||++|--+|.-.| |...+...++.+.+.+.. +..+++|+..++++++|.++
T Consensus 337 ~awik~yr~d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~av~~~~tg~dl 416 (558)
T COG3975 337 DAWIKYYRPDENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQAVLENVTGLDL 416 (558)
T ss_pred chhHHhhcccccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhccccH
Confidence 11 0000111222 3899999999988877 466788888888888766 66799999999999999999
Q ss_pred HHHHHHhhcCCCceeEEEEEeCcEEEEEEEe
Q 005189 445 NKLMNSWTKQKGYPVISVKVKEEKLELEQSQ 475 (709)
Q Consensus 445 ~~~~~~W~~~~G~P~l~v~~~~~~~~l~Q~r 475 (709)
..||+..+++..-|.+.---....+++++++
T Consensus 417 ~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~ 447 (558)
T COG3975 417 ATFFDEYIEGTEPPPLNPLLERFGLTFTPKP 447 (558)
T ss_pred HHHHHHHhhcCCCCChhhhhhhcceEEEecC
Confidence 9999999998876665433223456666644
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.22 E-value=2e-11 Score=110.76 Aligned_cols=106 Identities=29% Similarity=0.488 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccchhHHhhhHHHHHHHHHHhhhCccchhHHHHHHHHHHHhhccccCCCCceeeecC
Q 005189 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVN 378 (709)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~ 378 (709)
.....+++||++|+|+++.++.......|++||+|+|++... .. .+.......+..+....-.++.....
T Consensus 23 ~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~----~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (128)
T PF13485_consen 23 DWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRI----ED------EFDEDLKQAIESGSLPPLEPLNSSFD 92 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCc----cc------hhHHHHHHHHHcCCCCChHHHhcccc
Confidence 346689999999999999998777888999999999999331 00 11112222333333333233322111
Q ss_pred CcccccccccceeecchhHHHHHHHHhhCHHHHHHHHHHH
Q 005189 379 HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 418 (709)
Q Consensus 379 ~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~y 418 (709)
. ...+....|.+|.+++++|....|++.|++.|++|
T Consensus 93 ~----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 93 F----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred c----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 33455678999999999999999999999999875
No 13
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.48 E-value=0.0057 Score=64.25 Aligned_cols=142 Identities=17% Similarity=0.167 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCcc--ccchhHHhhhHHHHHHHHHHhhhCccchh-HHHHHHHHHHHhhcc-ccCCCC
Q 005189 298 KQRVATVVAHELAHQWFG--NLVTME--WWTHLWLNEGFATWVSYLAADSLFPEWKI-WTQFLDECTEGLRLD-GLAESH 371 (709)
Q Consensus 298 ~~~~~~~iaHElaHqWfG--nlVt~~--~w~d~WLnEGfA~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d-~~~~~~ 371 (709)
...+..++|||+-|+--- +.|... .-.|.|||||+|.-+|+++..+..+.... ....... +..+ .....+
T Consensus 136 ~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~----y~~~~~~~~~~ 211 (366)
T PF10460_consen 136 PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPY----YNNYTSGNYNC 211 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHH----HhhccccCCCc
Confidence 345788999999997633 234433 23699999999999999887766432211 0000111 1111 111112
Q ss_pred ceeeecCCcccccccccceeecchhHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh-c-cCCCHHHHHH
Q 005189 372 PIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE-G-SGEPVNKLMN 449 (709)
Q Consensus 372 pi~~~~~~~~~~~~~f~~i~Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~-~-sg~~l~~~~~ 449 (709)
.+..- ... .-....|....+++.-|....|.+.+++.|.. ....+.++..+++.+ + .+.++.++|.
T Consensus 212 ~l~~w-~~~-----g~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~ 279 (366)
T PF10460_consen 212 SLTAW-SSF-----GDSLASYSSSYSFGAYLYRQYGGDFYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLR 279 (366)
T ss_pred ceeec-CCC-----ccccccchhHHHHHHHHHHHcChHHHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHH
Confidence 22111 111 11235799999999999988898887766652 134567776666544 4 3678999999
Q ss_pred HhhcCC
Q 005189 450 SWTKQK 455 (709)
Q Consensus 450 ~W~~~~ 455 (709)
+|...-
T Consensus 280 ~w~~A~ 285 (366)
T PF10460_consen 280 RWGVAL 285 (366)
T ss_pred HHHHHH
Confidence 998655
No 14
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.24 E-value=0.00022 Score=62.88 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhcCCCCccc-----------cchhHHhhhHHHHHHHHHHhh
Q 005189 301 VATVVAHELAHQWFGNLVTMEW-----------WTHLWLNEGFATWVSYLAADS 343 (709)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~-----------w~d~WLnEGfA~y~~~~~~~~ 343 (709)
...+++||..|.|-+-.+.|.. -+.+|+-|||++|++.++...
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~R 57 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVR 57 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHH
Confidence 4578999999999976666544 567999999999999886654
No 15
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=96.92 E-value=0.02 Score=55.81 Aligned_cols=170 Identities=18% Similarity=0.238 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHhCCC-CCCCCccEEE--ecCCCCccccc----ccceeeecccccccCCCCcHHHHHHHHHHHHHHH
Q 005189 237 LNVAVKTLELYKEYFAVP-YSLPKLDMIA--IPDFAAGAMEN----YGLVTYRETALLYDDQHSAAANKQRVATVVAHEL 309 (709)
Q Consensus 237 l~~~~~~l~~~e~~fg~~-yP~~kld~v~--~p~~~~gamE~----~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEl 309 (709)
.....+++.+..+.|-.+ .+-+..+.|. +.++..-|--. -.-|.++...+ -.... ....+..+..+|.||+
T Consensus 27 ~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~gd~~~~~I~~S~~~i-~~~~~-~~~~~~Ei~Gvl~HE~ 104 (205)
T PF04450_consen 27 EQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSGDDDHKEIHFSARYI-AKYPA-DGDVRDEIIGVLYHEM 104 (205)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEecCCCccEEEEeHHHH-hhccc-ccchHHHHHHHHHHHH
Confidence 344555566666665533 2223333333 23432111111 13466665533 22111 1223467899999999
Q ss_pred HHHHhcCCCCccccchhHHhhhHHHHHHHHHHhhhCccchhHHHHHHHHHHHhhccccCCCCceeeecCCcccccccccc
Q 005189 310 AHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDA 389 (709)
Q Consensus 310 aHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pi~~~~~~~~~~~~~f~~ 389 (709)
+|-|=.+.-. -.--||-||+|.|.-..+- ..| .....|... ..++
T Consensus 105 ~H~~Q~~~~~---~~P~~liEGIADyVRl~aG--~~~--------------------~~w~~p~~~---------~~wd- 149 (205)
T PF04450_consen 105 VHCWQWDGRG---TAPGGLIEGIADYVRLKAG--YAP--------------------PHWKRPGGG---------DSWD- 149 (205)
T ss_pred HHHhhcCCCC---CCChhheecHHHHHHHHcC--CCC--------------------ccccCCCCC---------CCcc-
Confidence 9976544322 1234999999999975520 000 001111100 1233
Q ss_pred eeecchhHHHHHHHH-hhCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCCHHHHHHH
Q 005189 390 ISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS 450 (709)
Q Consensus 390 i~Y~Kg~~vl~mL~~-~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~~~~~~ 450 (709)
-.|.-.|.+|.-|+. ..|+ .|-+-|.+=+++..| +.+++|+. .+|++++++++.
T Consensus 150 ~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y---~~~~~~~~---l~G~~v~~LW~e 204 (205)
T PF04450_consen 150 DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKY---SSDDFWKE---LLGKPVDELWAE 204 (205)
T ss_pred cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCC---CcHhHHHH---HHCcCHHHHHhh
Confidence 378899999999999 6664 355556666655555 45666654 458889888764
No 16
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.92 E-value=0.0044 Score=55.24 Aligned_cols=39 Identities=28% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCCCc--cccchhHHhhhHHHHHHHHHH
Q 005189 303 TVVAHELAHQWFGNLVTM--EWWTHLWLNEGFATWVSYLAA 341 (709)
Q Consensus 303 ~~iaHElaHqWfGnlVt~--~~w~d~WLnEGfA~y~~~~~~ 341 (709)
.+++||-+||-.-|.=-. -.-.-.||.||||+|+|..-.
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 579999999998774211 111228999999999996644
No 17
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=95.06 E-value=1.3 Score=47.48 Aligned_cols=208 Identities=14% Similarity=0.134 Sum_probs=96.1
Q ss_pred EEEEEEEeeecCCCCCCCeeEEEEEEEECc--cce-----eeeEEeecceeEEEecccccccccCCCCCCceEEeccCce
Q 005189 468 KLELEQSQFLSSGSPGDGQWIVPITLCCGS--YDV-----CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 540 (709)
Q Consensus 468 ~~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~--~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 540 (709)
+++++|..-...+..+...|.|||.+..-+ +.. ...+.++..++++.+.++. .. ....++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~-------~~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVS-------EK--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES----------S----EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCC-------CC--ceeehhcCcc
Confidence 578889876555666667899999985432 222 1225677888999998642 22 5778999999
Q ss_pred EEEEEEcCH--HHHHHHHHHHHhcCCChhhHHH--------HHHHHHHHHHhc-cCCH-HHHHHHHHhc-c-CCCcHHHH
Q 005189 541 GFYRVKYDK--DLAARLGYAIEMKQLSETDRFG--------ILDDHFALCMAR-QQTL-TSLLTLMASY-S-EETEYTVL 606 (709)
Q Consensus 541 gyyRV~Yd~--~~w~~l~~~l~~~~~~~~~r~~--------li~D~~~la~~g-~~~~-~~~~~l~~~l-~-~E~~~~~w 606 (709)
.+-++.||- +.+..|... + -+.-+|.. +|.+...-..+| .... ..+++.++.+ . .+-|...-
T Consensus 77 APV~l~~~~s~~eL~~L~~~---D-~D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~~d~a~~ 152 (367)
T PF11940_consen 77 APVKLEYDYSDEELAFLAAH---D-SDPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDDLDPAFK 152 (367)
T ss_dssp SSSEEE----HHHHHHHHHH-----SSHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SSS-HHHH
T ss_pred cceEecCCCCHHHHHHHHHc---C-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCCCCHHHH
Confidence 999998873 333333332 1 12233321 111111111221 1111 2344444442 2 22222222
Q ss_pred HHHH--HHHHHHHHHHhccChHHHHHHHHHH--------HHHHHHHHHHcCCCC---CCCCChHHHHHHHHHHHHHHhcC
Q 005189 607 SNLI--TISYKIGRIAADARPELLDYLKQFF--------ISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLG 673 (709)
Q Consensus 607 ~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~lg~~~---~~~~~~~~~~~r~~i~~~ac~~~ 673 (709)
..++ ....+|...+..-+|+....-++.+ ...+..+|+++.-.. ...+.--.+.||+.++.+++..+
T Consensus 153 A~~L~LPs~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l~~~l~~~y~~~~~~~~y~~~~~~~g~RaLkn~~L~yL~~~~ 232 (367)
T PF11940_consen 153 ALLLTLPSESELAEQMENIDPDAIHAAREALRRALAQALRDELLALYQALAATGPYSPDAEAAGRRALKNLCLSYLAAAD 232 (367)
T ss_dssp HHHTS---HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHTTTTT-SHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 2221 1222332222211233222222222 334444566651111 11223345899999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 005189 674 HKETLNEASKRFHAF 688 (709)
Q Consensus 674 ~~~c~~~a~~~f~~~ 688 (709)
.++..+.|.+.|+.-
T Consensus 233 ~~~~~~la~~qy~~A 247 (367)
T PF11940_consen 233 DPEAAELAQEQYKSA 247 (367)
T ss_dssp CTHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHhC
Confidence 999999999999864
No 18
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=92.45 E-value=0.5 Score=45.98 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCccEEEecCCCCc-----ccccccceeeecccccc-cCCCCcHHHHHHHHHHHHHHHHHH
Q 005189 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG-----AMENYGLVTYRETALLY-DDQHSAAANKQRVATVVAHELAHQ 312 (709)
Q Consensus 239 ~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~g-----amE~~gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHq 312 (709)
.+.+.+....+.+ |-+.+++..+|.-+.+ .+...|-..+....+++ -+.. .....+..++|||+.|.
T Consensus 4 ~i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~~---~~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPND---YSLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCCc---ccHHHHHHHHHHHHHHH
Confidence 3445555555554 4557888766532222 11123333344443333 2221 23346889999999998
Q ss_pred HhcCCCCc----cccchhHHhhhHHHHHHHHHHhhhC
Q 005189 313 WFGNLVTM----EWWTHLWLNEGFATWVSYLAADSLF 345 (709)
Q Consensus 313 WfGnlVt~----~~w~d~WLnEGfA~y~~~~~~~~~~ 345 (709)
+--..+.. ..--|.-+.||+|.+++.....+..
T Consensus 77 ~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 77 CRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 64333321 1223567899999999977655443
No 19
>PRK04860 hypothetical protein; Provisional
Probab=85.96 E-value=1.4 Score=41.14 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc--ccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHH
Q 005189 236 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN--YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (709)
Q Consensus 236 ~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~--~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (709)
+...+...+..-+++||.|+|.|+..+-. ....||+-. -+-|.+... ++.+ .....+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~--R~rtaG~~~l~~~~I~~Np~--ll~~-----~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQ--RGTSAGTAWLQSNEIRLNPV--LLLE-----NQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEee--cchhhcchhHhcCCeeeCHH--HHhh-----CcHHHHHhHHHHHHHHHH
Confidence 44566677777889999888876654322 222244322 223333322 2222 134567889999999988
Q ss_pred h
Q 005189 314 F 314 (709)
Q Consensus 314 f 314 (709)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 4
No 20
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=85.11 E-value=5.3 Score=39.03 Aligned_cols=92 Identities=21% Similarity=0.333 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHh
Q 005189 235 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (709)
Q Consensus 235 ~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (709)
.+.+.....++.+++.+|.++ +++.+=-.-. ..|....-|.|.+.-..+.+.+. -+..+|+|||||--.
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~--~~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~~--------~idYVvvHEL~Hl~~ 177 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLPP--PKIKIRDMKS-RWGSCSSKGNITLNWRLVMAPPE--------VIDYVVVHELCHLRH 177 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCCc--ceEEEeehhh-ccccCCCCCcEEeecccccCCcc--------HHHHHHHHHHHHhcc
Confidence 345566777788888888643 3443322111 24555556677777663333322 478899999999876
Q ss_pred cCCCCccccchhHHhhhHHHHHHHHHHhhhCccchhHHH
Q 005189 315 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (709)
Q Consensus 315 GnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~ 353 (709)
.|. -...| ..+++..|+|+....
T Consensus 178 ~nH-----s~~Fw-----------~~v~~~~Pd~k~~~~ 200 (205)
T PF01863_consen 178 PNH-----SKRFW-----------ALVEKYMPDYKERRK 200 (205)
T ss_pred CCC-----CHHHH-----------HHHHHHCcCHHHHHH
Confidence 553 33444 345666788655433
No 21
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=84.12 E-value=1 Score=44.41 Aligned_cols=40 Identities=35% Similarity=0.351 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccchhHHhhhHHHHHHHHHHhhh
Q 005189 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (709)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~ 344 (709)
..++.+|-||+|||=|. |. +|.=+||+||+..+...+++.
T Consensus 195 ~~lA~LIFHELAHQk~Y--~~----~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 195 TYLASLIFHELAHQKIY--VN----NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHHHHhhheEe--ec----CcchHhHHHHHHHHHHhHHHH
Confidence 35889999999999765 21 456789999999998877654
No 22
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=82.88 E-value=1 Score=41.53 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=33.7
Q ss_pred HHHHHHH-HHhCCCCCCCCccEEEecCCC--Cccccc-ccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 005189 242 KTLELYK-EYFAVPYSLPKLDMIAIPDFA--AGAMEN-YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (709)
Q Consensus 242 ~~l~~~e-~~fg~~yP~~kld~v~~p~~~--~gamE~-~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (709)
+.++-++ .+|+-++|-++ +....... .|.-.. .+.|.++.. .........+..+|.|||||.+..
T Consensus 5 ~~~~~~n~~~F~~~l~~~~--i~w~~r~~~~~G~~~~~~~~I~ln~~-------l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHPK--VVWNKRLRKTGGRCLLKSAEIRLNPK-------LLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCCE--EEEehhhhhhhHHhhcCCCEEEeCHH-------HHhhccHHHHHhhHHHHHHHHHHH
Confidence 3444455 88987777652 22222211 222221 233444433 111112345778999999999975
No 23
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=81.56 E-value=1.2 Score=46.49 Aligned_cols=39 Identities=36% Similarity=0.423 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCccccchhHHhhhHHHHHHHHHHhhh
Q 005189 300 RVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (709)
Q Consensus 300 ~~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~ 344 (709)
.++.+|-||+|||=+. .+ +|.=+||+||++.+...+.+.
T Consensus 164 ~LA~LIfHELaHq~~Y----v~--~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 164 ELARLIFHELAHQTLY----VK--GDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHHhhceee----cC--CCchhhHHHHHHHHHHHHHHH
Confidence 5899999999999543 11 466789999999998877654
No 24
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=76.45 E-value=2.8 Score=44.15 Aligned_cols=31 Identities=39% Similarity=0.642 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhcCCCCccccchhHHhhhHHHHHHHHHHhh
Q 005189 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343 (709)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~ 343 (709)
.-.++|||+|||= | ...|.=|+|+++++..+
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~ 226 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACIN 226 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhc
Confidence 5578999999995 4 34899999999987654
No 25
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=73.20 E-value=6.4 Score=36.42 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=38.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEEEecCCC---Ccccccccceeeecccc-cccCCCCcHHHHHHHHHH
Q 005189 231 NQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFA---AGAMENYGLVTYRETAL-LYDDQHSAAANKQRVATV 304 (709)
Q Consensus 231 ~~~~~~l~~~~~~l~~~e~~fg~~yP~~k--ld~v~~p~~~---~gamE~~gli~~~e~~l-l~~~~~~~~~~~~~~~~~ 304 (709)
..+..|...+.++.+||.+.|| .=++.. ..++..=.+. ..|.-+-..++|..-.- .+.+- ..-..+
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAfW~g~~m~yGdG~~~~f~~~-------~~~lDV 138 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAFWNGSQMVYGDGDGQIFKPF-------ASSLDV 138 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EEE-SSSEEEE---SSSBS-G-------GG-HHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCccccCCEEEEECCCCcccccC-------ccccce
Confidence 3455677788999999999999 556653 3344332211 12332323333333211 11111 112468
Q ss_pred HHHHHHHHH
Q 005189 305 VAHELAHQW 313 (709)
Q Consensus 305 iaHElaHqW 313 (709)
+||||+|--
T Consensus 139 vaHEltHGV 147 (150)
T PF01447_consen 139 VAHELTHGV 147 (150)
T ss_dssp HHHHHHHHH
T ss_pred eeecccccc
Confidence 999999963
No 26
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=66.86 E-value=1.6e+02 Score=35.12 Aligned_cols=129 Identities=15% Similarity=0.205 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCC-CccccchhHHhhhHHHHHHHHHHhhhCc---cchh---HHHHHHHHHHHhhccccCCCCceee
Q 005189 303 TVVAHELAHQWFGNLV-TMEWWTHLWLNEGFATWVSYLAADSLFP---EWKI---WTQFLDECTEGLRLDGLAESHPIEV 375 (709)
Q Consensus 303 ~~iaHElaHqWfGnlV-t~~~w~d~WLnEGfA~y~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~d~~~~~~pi~~ 375 (709)
..+-|||+|.+=+..+ .-..+.+.| |-=+|.++++..+..... .|-. ........+.+. .+ ...|
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~-i~---~~~~--- 309 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIAL-ID---NNKP--- 309 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHH-Hh---cCCC---
Confidence 5789999999988777 334566888 777888888765542111 1110 000111111110 00 0011
Q ss_pred ecCCccccccccccee-ecchhHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhc-cCCCHHHHHHHh
Q 005189 376 EVNHTGEIDEIFDAIS-YRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNA--KTEDLWAALEEG-SGEPVNKLMNSW 451 (709)
Q Consensus 376 ~~~~~~~~~~~f~~i~-Y~Kg~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~--~~~dl~~~l~~~-sg~~l~~~~~~W 451 (709)
|+... -.|=..+..|+...-|++.|+..=+.|-+. .-.+. ..-++++.+... ++.|+..+++-|
T Consensus 310 -----------~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 310 -----------FDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred -----------cccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 22211 234445555788889999999888887765 22222 222344455555 899999999888
No 27
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=64.71 E-value=38 Score=36.44 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=26.1
Q ss_pred HHhhhHHHHHHHHHHhhhCccchhHHHHHHHHH
Q 005189 327 WLNEGFATWVSYLAADSLFPEWKIWTQFLDECT 359 (709)
Q Consensus 327 WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~ 359 (709)
=+|||.|+|-.+.++.+++.+....+.++.+.+
T Consensus 269 VMNEGWAtfWHytiln~lydE~~~~~~~~lEfL 301 (495)
T COG2719 269 VMNEGWATFWHYTILNHLYDEGKLTERAMLEFL 301 (495)
T ss_pred HhhhhHHHHHHHHHHHhhhhhcccChHHHHHHH
Confidence 589999999999999988887766666655443
No 28
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=62.94 E-value=8.2 Score=42.03 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=35.0
Q ss_pred CCCCccEEEecCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcC
Q 005189 256 SLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (709)
Q Consensus 256 P~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (709)
|-..++++.|-+-...|.-.+|.-++-.+.++...+ +..+++.|||||++|-==++
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae-----~esElagViAHEigHv~qrH 145 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE-----NESELAGVIAHEIGHVAQRH 145 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC-----CHHHHHHHHHHHHHHHhhhh
Confidence 334578888877666666665544444343443322 23468999999999964443
No 29
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=62.70 E-value=42 Score=28.37 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=33.2
Q ss_pred CcCEEEEEec-Cce--eeEEEeeeeccCCCccccCceEEEecCceEEEEEeCCCCCcceEEEEEEEEe
Q 005189 45 DTKFIVLNAA-DLT--INNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEG 109 (709)
Q Consensus 45 ~~~~i~L~~~-~l~--i~~v~v~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~g 109 (709)
+..+|.|... .++ ...+.|.+..+ ..+.......+.....+.+.++.+|++|.|+|.-.--+
T Consensus 18 ~P~~v~L~F~e~v~~~~s~v~v~~~~g---~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 18 APEEVTLTFSEPVEPGFSSVTVTDPDG---KRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVS 82 (97)
T ss_dssp --SSEEEEESS---CCC-EEEEEEEEE---TTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEE
T ss_pred CCCEEEEEeCCCCccCccEEEEEcCCC---ceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEe
Confidence 3456677665 244 66777765432 12233333444456789999999999999988765443
No 30
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=62.09 E-value=41 Score=36.00 Aligned_cols=118 Identities=15% Similarity=0.194 Sum_probs=73.8
Q ss_pred hhhHHHHHHHHHH-HHHhccCCHHHHHHHHHhccCCCcH--------HHHHHHH----HHHHHHHHHHhccChHHHHHHH
Q 005189 566 ETDRFGILDDHFA-LCMARQQTLTSLLTLMASYSEETEY--------TVLSNLI----TISYKIGRIAADARPELLDYLK 632 (709)
Q Consensus 566 ~~~r~~li~D~~~-la~~g~~~~~~~~~l~~~l~~E~~~--------~~w~~~~----~~l~~~~~~~~~~~~~~~~~~~ 632 (709)
+.+|.++|+|+-. |..+..++|..=|.+++.-++|-.+ .+|+... .-|..|...|... |+...
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~-p~l~n--- 387 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDEN-PELAN--- 387 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcC-cchhh---
Confidence 6799999999965 5555568999999999887776554 4565542 2233444444322 22221
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCCCCCCcccce
Q 005189 633 QFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRK 703 (709)
Q Consensus 633 ~~~~~l~~~~~~~lg~~~~~~~~~~~~~~r~~i~~~ac~~~~~-~c~~~a~~~f~~~~~~~~~~~i~~~lr~ 703 (709)
-++.|.|..+- ......+|. ++..|...|.+ +|...|...|+.|.+. .+|++|-.
T Consensus 388 ----Ll~~pyF~~~~-------~~~~~~~R~-vV~~a~~~giP~P~~ssalsy~Dsyr~~----~lpaNLiQ 443 (473)
T COG0362 388 ----LLLAPYFKSIL-------EEYQQSLRR-VVAYAVEAGIPVPAFSSALSYYDSYRTA----RLPANLIQ 443 (473)
T ss_pred ----hhcCHHHHHHH-------HHHHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHhhhc----cccHHHHH
Confidence 23333333321 012345555 56677889987 9999999999999743 46777643
No 31
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=57.55 E-value=16 Score=35.99 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCccccccc----ceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcC
Q 005189 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYG----LVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (709)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~~g----li~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (709)
.+.++-+.+..|.+.|.+++-++-.+. ..|.-..+ .|..... ++.. .+..++..++|||++|-.-++
T Consensus 34 ~~~v~~l~~~~~~~~~~~~v~v~~~~~--~NA~~~g~~~~~~I~v~~~-ll~~------~~~~el~aVlaHElgH~~~~h 104 (226)
T PF01435_consen 34 RRIVEELARRAGLGIPPPRVYVIDSPS--PNAFATGGGPRKRIVVTSG-LLES------LSEDELAAVLAHELGHIKHRH 104 (226)
T ss_dssp HHHHHHHHHHHHCTSS--EEEEE--SS--EEEEEETTTC--EEEEEHH-HHHH------SSHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCC--CcEEEEccCCCcEEEEeCh-hhhc------ccHHHHHHHHHHHHHHHHcCC
Confidence 334444444445566655554444444 33333222 2444444 4421 134468899999999999876
Q ss_pred CCCc
Q 005189 317 LVTM 320 (709)
Q Consensus 317 lVt~ 320 (709)
....
T Consensus 105 ~~~~ 108 (226)
T PF01435_consen 105 ILKS 108 (226)
T ss_dssp CCCC
T ss_pred cchH
Confidence 5544
No 32
>PRK04351 hypothetical protein; Provisional
Probab=57.33 E-value=12 Score=34.50 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 005189 298 KQRVATVVAHELAHQW 313 (709)
Q Consensus 298 ~~~~~~~iaHElaHqW 313 (709)
...+..+|+||++|-.
T Consensus 58 ~~~l~~vv~HElcH~~ 73 (149)
T PRK04351 58 LEELIGIIKHELCHYH 73 (149)
T ss_pred HHHHHhhHHHHHHHHH
Confidence 4568899999999953
No 33
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=57.25 E-value=11 Score=32.71 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 005189 301 VATVVAHELAHQWFGNLV 318 (709)
Q Consensus 301 ~~~~iaHElaHqWfGnlV 318 (709)
...+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 457899999999998544
No 34
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=55.85 E-value=17 Score=35.23 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcCCCCccccchhHHhhhHHHHHHHHHHhh
Q 005189 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343 (709)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~ 343 (709)
...++|||+.|-|.- ..-----+.++-||+.+-+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 457899999999973 11111225789999999999986653
No 35
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=55.76 E-value=12 Score=40.65 Aligned_cols=110 Identities=23% Similarity=0.260 Sum_probs=60.2
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEEEecCCCCcccccccceeeecccccccCCCCcH-HHHHHHHHH
Q 005189 228 GKANQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAA-ANKQRVATV 304 (709)
Q Consensus 228 ~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~k--ld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~-~~~~~~~~~ 304 (709)
+....+..|-..+.+..+||.++|| .-.++. +.++..-.| | -++.-.+.....|+|....... ........+
T Consensus 266 ~~~~a~~dAh~~~g~vyD~yk~~fg-r~S~Dn~g~~l~s~vHy--G--~~ynNAfWdG~qMvyGDGDG~~f~~~S~sLDV 340 (507)
T COG3227 266 SSDEAAVDAHYNAGKVYDYYKNTFG-RNSYDNNGMPLVSTVHY--G--KNYNNAFWDGDQMVYGDGDGSFFTPFSGSLDV 340 (507)
T ss_pred cchhhhHHHHhhcchHHHHHHHHhc-ccCcCCCCCceEEEEee--c--cccccccccCceeEeecCCcceecccccccce
Confidence 3334455667788999999999999 334433 334433222 2 1222223333445554432110 011112468
Q ss_pred HHHHHHHHHhc---CCCCccccchhHHhhhHHHHHHHHHHhhh
Q 005189 305 VAHELAHQWFG---NLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (709)
Q Consensus 305 iaHElaHqWfG---nlVt~~~w~d~WLnEGfA~y~~~~~~~~~ 344 (709)
+||||.|.--+ +++.-..- ==|||+|+.-+.-++....
T Consensus 341 vAHElTHGvtq~tA~L~Y~~qs--GALNEsfSDvfG~~i~~~~ 381 (507)
T COG3227 341 VAHELTHGVTQQTAGLIYRGQS--GALNESFSDVFGTLIEQYV 381 (507)
T ss_pred ehhhhcchhhhhccCceecCCC--CchhhHHHHHHHHHHHHHh
Confidence 99999996554 34433322 2489999999986554433
No 36
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=55.68 E-value=35 Score=31.38 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=32.5
Q ss_pred cccCceEEEecCceEEEEEeCCCCCcceEEEEEEEEeeeCCCCcceEE
Q 005189 73 ALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYR 120 (709)
Q Consensus 73 ~~~~~~~~~~~~~~~l~i~l~~~l~~g~~~l~i~y~g~~~~~~~G~y~ 120 (709)
.+....+..+.++..+.|.+++|++|| -+++|.+.+.-+....|.|.
T Consensus 76 ~ipl~~v~~~~~~~~i~I~f~~PV~pG-~tv~V~l~~v~NP~~~G~Y~ 122 (146)
T PF10989_consen 76 SIPLAEVEWDEDGRTITITFDEPVPPG-TTVTVVLSPVRNPRSGGTYQ 122 (146)
T ss_pred ccCceEEEEcCCCCEEEEEeCCCCCCC-CEEEEEEEeeeCCCCCCeEE
Confidence 344466788889999999999999999 33444444443444556664
No 37
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=53.77 E-value=81 Score=31.33 Aligned_cols=92 Identities=22% Similarity=0.321 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHh
Q 005189 235 FALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (709)
Q Consensus 235 ~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (709)
.+.+.....+..+.+.+|.++.--++. ..-. ..|.--.-|-|.+... +.. .....+..+++||+||-=.
T Consensus 120 ~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~k~-~WGScs~~~~i~~~~~-l~~-------~p~~~i~YVvvHELaHLke 188 (223)
T COG1451 120 ILREILEIRLKEYAKKLGVPPRAIKLK--NMKR-RWGSCSKAGEIRFNWR-LVM-------APEEVIDYVVVHELAHLKE 188 (223)
T ss_pred HHHHHHHHHHHHHHHHhCCCccceeee--eccc-eeeeecCCCcEEeehh-hhc-------CCHHHHHHHHHHHHHHHhh
Confidence 455666777888899999765532222 1111 1232222333333332 111 1233578899999999988
Q ss_pred cCCCCccccchhHHhhhHHHHHHHHHHhhhCccchhHHH
Q 005189 315 GNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (709)
Q Consensus 315 GnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~ 353 (709)
.|. -..+| ..++.++|++.....
T Consensus 189 ~nH-----s~~Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 189 KNH-----SKRFW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhc-----cHHHH-----------HHHHHHCCChHHHHH
Confidence 872 23344 345667788765443
No 38
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=49.61 E-value=12 Score=34.73 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 005189 298 KQRVATVVAHELAHQWFG 315 (709)
Q Consensus 298 ~~~~~~~iaHElaHqWfG 315 (709)
...+..+|.||++|.|..
T Consensus 57 ~~~~~~tL~HEm~H~~~~ 74 (157)
T PF10263_consen 57 EEELIDTLLHEMAHAAAY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 446889999999999984
No 39
>PRK03982 heat shock protein HtpX; Provisional
Probab=49.45 E-value=46 Score=34.52 Aligned_cols=66 Identities=26% Similarity=0.390 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc-----ccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHh
Q 005189 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN-----YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (709)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~-----~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (709)
..+.++-+.+..|+| .+++-++ ++-...|+-. -|.|...+. ++ +. . +..++..++|||++|-=-
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~--~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~~----l-~~~El~AVlAHElgHi~~ 138 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIV--PTQTPNAFATGRDPKHAVVAVTEG-IL-NL----L-NEDELEGVIAHELTHIKN 138 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEE--eCCCcceEEeccCCCCeEEEeehH-HH-hh----C-CHHHHHHHHHHHHHHHHc
Confidence 455566666677764 4565444 3322233221 234444443 32 11 1 345689999999999765
Q ss_pred cC
Q 005189 315 GN 316 (709)
Q Consensus 315 Gn 316 (709)
++
T Consensus 139 ~h 140 (288)
T PRK03982 139 RD 140 (288)
T ss_pred CC
Confidence 54
No 40
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=48.72 E-value=36 Score=35.35 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=40.9
Q ss_pred HHHHHHHhCCCCCCCCccEEEecCCCCcccccc---cceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005189 244 LELYKEYFAVPYSLPKLDMIAIPDFAAGAMENY---GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (709)
Q Consensus 244 l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~~---gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (709)
+.-....-|++ +.+++.++-.|...+-++... |.|...+. ++ +. -+..++..+++||++|.=-++.+.
T Consensus 105 v~~~a~~~~~~-~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll-~~-----l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 105 VAELARQAGIP-HMPEVYILETPQPNAFALGGGPKNGRVVVTTG-LL-DL-----LNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHHHHCCCC-CCCeeEEecCCCccceecCCCCCCeeEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHhcccHHH
Confidence 33344455533 246666666665544455553 67776665 33 21 134468999999999988776554
No 41
>PRK05457 heat shock protein HtpX; Provisional
Probab=47.71 E-value=37 Score=35.18 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCC---CcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcC
Q 005189 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFA---AGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (709)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~---~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (709)
..+.++-+.+..|+ |.|++-++-.+... .|.-.+-+.|.+... ++- . -+..++..++|||++|.=-|+
T Consensus 79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~-~-----L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LLQ-N-----MSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hhh-h-----CCHHHHHHHHHHHHHHHHcCC
Confidence 34556666777775 56777666443222 121122234555443 221 1 123568999999999976654
No 42
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=46.62 E-value=55 Score=29.08 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=35.4
Q ss_pred CEEEEEec---CceeeEEEeeeeccCCCccccCceEEEecCc-eEEEEEeCCCCCcceEEEEEEEEe
Q 005189 47 KFIVLNAA---DLTINNRSVSFTNKVSSKALEPTKVELVEAD-EILVLEFAETLPTGMGVLAIGFEG 109 (709)
Q Consensus 47 ~~i~L~~~---~l~i~~v~v~~~~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~l~~g~~~l~i~y~g 109 (709)
..|.|+.. ...+..+.+.+..+ ..+.......+..+ ..++|.++.+|++|.|+|.-+..+
T Consensus 47 ~~i~L~Fse~ve~~fs~~~l~~~d~---~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 47 AAITLEFSEGVEPGFSGAKLTGPDG---EEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred eeEEEecCCccCCCcceeEEECCCC---CccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 35566654 23345666654322 11222233333333 459999999999999999877654
No 43
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=45.91 E-value=30 Score=28.14 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCCCCCccEEEecCCCC--cccccccceeeecccccccCCC---CcHHHHHHHHHHHHHHHHHHH
Q 005189 243 TLELYKEYFAVPYSLPKLDMIAIPDFAA--GAMENYGLVTYRETALLYDDQH---SAAANKQRVATVVAHELAHQW 313 (709)
Q Consensus 243 ~l~~~e~~fg~~yP~~kld~v~~p~~~~--gamE~~gli~~~e~~ll~~~~~---~~~~~~~~~~~~iaHElaHqW 313 (709)
+...+|..||.+ +.+..+-.=|.-.. ..|. .--++.... +.+.+.. ++. .-..+++||++|-+
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~-A~A~T~G~~-I~f~~g~~~~~s~----~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAASRAAAALG-ARAFTVGND-IYFAPGKYNPDSP----EGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCchhhhhhccC-CeEEEECCE-EEEcCCCcCCCCC----CcchhHhHHHHHHH
Confidence 456789999954 55655543322111 1111 112333333 3332221 111 13478999999965
No 44
>PRK01345 heat shock protein HtpX; Provisional
Probab=45.87 E-value=44 Score=35.19 Aligned_cols=68 Identities=28% Similarity=0.273 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc---ccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcC
Q 005189 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (709)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (709)
..+.++-+.+..|+| .+++-++-.+....-+... -+.|.+... ++-. -+..++..++|||++|.=-++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~~------L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQR------LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 456667777778875 4565444322222112211 123544443 3321 123468999999999986554
No 45
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=43.55 E-value=1.2e+02 Score=32.44 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHH-HHH---------
Q 005189 243 TLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHEL-AHQ--------- 312 (709)
Q Consensus 243 ~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEl-aHq--------- 312 (709)
+=++..+|++ .. --++.+...++..++||-.-+-|.++.+.. -...++..++.||+ .|.
T Consensus 118 ~~~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~~---------fs~~~l~~L~~HEigvH~lt~~Ng~~Q 186 (349)
T PF08014_consen 118 LQERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNAM---------FSERDLEALLHHEIGVHLLTTLNGRAQ 186 (349)
T ss_pred HHHHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCCC---------cCHHHHHHHHHHhhhhhhccccccccC
Confidence 3344556666 22 224555556778788876655555554422 13446889999999 452
Q ss_pred ---HhcCCCCccccchhHHhhhHHHHHHHHH
Q 005189 313 ---WFGNLVTMEWWTHLWLNEGFATWVSYLA 340 (709)
Q Consensus 313 ---WfGnlVt~~~w~d~WLnEGfA~y~~~~~ 340 (709)
|++...-+. .=..||+|.+.|++.
T Consensus 187 Pl~~l~~Glp~~----~~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 187 PLKILSLGLPGY----TPTQEGLAVLSEYLS 213 (349)
T ss_pred CcHHhCCCCCCC----CCCchHHHHHHHHHh
Confidence 333221111 123799999999763
No 46
>PRK04897 heat shock protein HtpX; Provisional
Probab=42.82 E-value=53 Score=34.23 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccc---ccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcC
Q 005189 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAM---ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (709)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gam---E~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (709)
..+.++-+.+..|+ |.|++-++-.+...+-+. .+-+.|.+... ++- .-+..++..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gi--p~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll~------~l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQI--PMPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LLA------IMNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCC--CCCcEEEecCCCCceEEeccCCCCcEEEeehH-HHh------hCCHHHHHHHHHHHHHHHhcCC
Confidence 45666667777776 566776554332111111 12234444433 221 1123568999999999965443
No 47
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=42.77 E-value=86 Score=30.14 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q 005189 300 RVATVVAHELAHQW 313 (709)
Q Consensus 300 ~~~~~iaHElaHqW 313 (709)
..+.++||||+|+.
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 46789999999996
No 48
>PRK03001 M48 family peptidase; Provisional
Probab=41.54 E-value=42 Score=34.74 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc-----cccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHh
Q 005189 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-----NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (709)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE-----~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (709)
..+.++-+.+..|+|. +++-++ ++-...|+- ..+.|...+. ++ +. . +..++..++|||++|-=-
T Consensus 69 L~~~v~~la~~~g~~~--p~v~v~--~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~----l-~~~El~aVlAHElgHi~~ 137 (283)
T PRK03001 69 FYRMVRELAQRAGLPM--PKVYLI--NEDQPNAFATGRNPEHAAVAATTG-IL-RV----L-SEREIRGVMAHELAHVKH 137 (283)
T ss_pred HHHHHHHHHHHcCCCC--CeEEEe--cCCCcceEEecCCCCCeEEEecHH-HH-hh----C-CHHHHHHHHHHHHHHHhC
Confidence 4566666677788654 455443 332112211 1233444444 22 11 1 245689999999999755
Q ss_pred cC
Q 005189 315 GN 316 (709)
Q Consensus 315 Gn 316 (709)
++
T Consensus 138 ~h 139 (283)
T PRK03001 138 RD 139 (283)
T ss_pred CC
Confidence 43
No 49
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=41.38 E-value=18 Score=30.82 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHh
Q 005189 300 RVATVVAHELAHQWF 314 (709)
Q Consensus 300 ~~~~~iaHElaHqWf 314 (709)
....+++||++|-|=
T Consensus 78 GC~~TL~HEL~H~WQ 92 (141)
T PHA02456 78 GCRDTLAHELNHAWQ 92 (141)
T ss_pred chHHHHHHHHHHHHh
Confidence 366789999999993
No 50
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.35 E-value=2.6e+02 Score=30.84 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=45.1
Q ss_pred EecCCCCeEEEEEEEEEEEECC--cCEEEEEec-----CceeeEEEeeeeccCCCccccCceEEEecCceEEEEEeCCCC
Q 005189 24 TPDLTSCKFGGSVAIDVDVVGD--TKFIVLNAA-----DLTINNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETL 96 (709)
Q Consensus 24 ~~~~~~~~~~G~v~I~~~~~~~--~~~i~L~~~-----~l~i~~v~v~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~l 96 (709)
++|+.+....=++.|+++...+ .+...+-.. .+..-++...+.............+.-....+...|.|++||
T Consensus 10 ~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~pl 89 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVNSGSEIKYYEITLPKPL 89 (432)
T ss_pred EEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCccccccccccccccCCCCcceEEEECCCCC
Confidence 4566666666667777776543 444444332 233333333221110000011112222223356899999999
Q ss_pred Ccc-eEEEEEEEEe
Q 005189 97 PTG-MGVLAIGFEG 109 (709)
Q Consensus 97 ~~g-~~~l~i~y~g 109 (709)
+|| +.+|.++|.-
T Consensus 90 ~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 90 APGEKVTLTVEYVL 103 (432)
T ss_pred CCCCEEEEEEEEEe
Confidence 999 8888888764
No 51
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=41.22 E-value=19 Score=34.66 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 005189 297 NKQRVATVVAHELAHQWFGNL 317 (709)
Q Consensus 297 ~~~~~~~~iaHElaHqWfGnl 317 (709)
....+..++.|||||.++|+.
T Consensus 78 ~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 78 PYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred eHHHHHHHHHHHHHhcccCCc
Confidence 445688999999999999873
No 52
>PRK02870 heat shock protein HtpX; Provisional
Probab=41.01 E-value=64 Score=34.21 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc---cccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHH
Q 005189 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (709)
Q Consensus 241 ~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (709)
.++++-+....|+|+ .+++-++-.+...+-++. .-+.|.+.+. ++ +. -+..++..++|||++|-
T Consensus 118 ~~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL-~~-----L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 118 YNVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LL-EK-----LDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hh-hh-----CCHHHHHHHHHHHHHHH
Confidence 345555555567543 345544433322222221 2245555544 33 11 13456899999999996
No 53
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=40.81 E-value=18 Score=34.34 Aligned_cols=13 Identities=46% Similarity=0.527 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 005189 301 VATVVAHELAHQW 313 (709)
Q Consensus 301 ~~~~iaHElaHqW 313 (709)
-..++||||+||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 4567999999998
No 54
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=37.60 E-value=60 Score=25.70 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=38.9
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCC
Q 005189 396 ASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE 442 (709)
Q Consensus 396 ~~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~ 442 (709)
+.++.+|...++.+.+ .-|..++++++-+-++-++|.+.+....|.
T Consensus 12 ~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 12 PMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 5789999999998885 456677778888899999999999998883
No 55
>PRK03072 heat shock protein HtpX; Provisional
Probab=37.46 E-value=69 Score=33.20 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCccEEEecCCC---CcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 005189 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFA---AGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (709)
Q Consensus 239 ~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~---~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (709)
...+.++-+.+..|+ |.|++-++-.+... .|....-+.+..... ++ +. -+..++..++|||++|-=-|
T Consensus 71 ~L~~~v~~la~~~g~--p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQ--PMPRLYISPTAAPNAFATGRNPRNAAVCCTEG-IL-QI-----LNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCC--CCCCEEEecCCCCceEEecCCCCCcEEEecHH-HH-Hh-----CCHHHHHHHHHHHHHHHhcC
Confidence 345667777777886 46676555433221 121111112333332 33 11 12456899999999996544
Q ss_pred C
Q 005189 316 N 316 (709)
Q Consensus 316 n 316 (709)
+
T Consensus 142 d 142 (288)
T PRK03072 142 D 142 (288)
T ss_pred C
Confidence 3
No 56
>PRK02391 heat shock protein HtpX; Provisional
Probab=36.33 E-value=83 Score=32.77 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccc---cccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhcC
Q 005189 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (709)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE---~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (709)
..+.++-+.+..|+| .+++-++-.+....-+.. .-+.|.+.+. ++- . -+..++..++|||++|--=++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~-~-----L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LMR-R-----LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HHh-h-----CCHHHHHHHHHHHHHHHHcCC
Confidence 445556666778764 457665543322211111 1233444433 221 1 123468899999999976654
No 57
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=33.38 E-value=58 Score=29.83 Aligned_cols=14 Identities=50% Similarity=0.674 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q 005189 299 QRVATVVAHELAHQ 312 (709)
Q Consensus 299 ~~~~~~iaHElaHq 312 (709)
..+..+|.|||||-
T Consensus 59 ~f~~~vV~HELaHl 72 (156)
T COG3091 59 DFIEQVVPHELAHL 72 (156)
T ss_pred HHHHHHHHHHHHHH
Confidence 34778899999873
No 58
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=32.57 E-value=1.7e+02 Score=26.96 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=24.3
Q ss_pred eEEEEEEeCCcc---chHHHHHHHHHHHHHHHHHHhCCCC
Q 005189 219 IKVRVYCQVGKA---NQGKFALNVAVKTLELYKEYFAVPY 255 (709)
Q Consensus 219 ~~v~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~fg~~y 255 (709)
.++++|..+... .......+.+.+++..+++..++.+
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~F 41 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLKF 41 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeEE
Confidence 467788777542 2344556778888888888765433
No 59
>PRK01265 heat shock protein HtpX; Provisional
Probab=32.30 E-value=1e+02 Score=32.56 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCccEEEecCCCCccccc---ccceeeecccccccCCCCcHHHHHHHHHHHHHHHHHHHhc
Q 005189 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (709)
Q Consensus 240 ~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~---~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (709)
..+.++-+.+..|+ |.+++-++-.+...+-+... -+-|...+. ++ +. -+..++..++|||++|-=-+
T Consensus 85 L~~~v~~la~~~g~--~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 85 LYSIVAEVAKYNGI--RVPKVYIADVPFPNAFAYGSPIAGKRIAITLP-LL-KI-----LNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHHcCC--CCCeEEEecCCCCCeEEeccCCCCCEEEEehH-HH-hh-----CCHHHHHHHHHHHHHHHHcc
Confidence 34556666677776 45676555433211111111 133444443 22 11 13456889999999995433
No 60
>PRK10301 hypothetical protein; Provisional
Probab=31.43 E-value=2.7e+02 Score=24.75 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=19.6
Q ss_pred CceEEEEEeCCCCCcceEEEEEEEEe
Q 005189 84 ADEILVLEFAETLPTGMGVLAIGFEG 109 (709)
Q Consensus 84 ~~~~l~i~l~~~l~~g~~~l~i~y~g 109 (709)
+...+.+.++.+|++|.|+|+-+--+
T Consensus 84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 84 DQKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred CCcEEEEECCCCCCCccEEEEEEEEe
Confidence 34568888888999999988765544
No 61
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=30.38 E-value=1.6e+02 Score=30.72 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 005189 298 KQRVATVVAHELAHQWFGNL 317 (709)
Q Consensus 298 ~~~~~~~iaHElaHqWfGnl 317 (709)
...++.+++||+|||=-++.
T Consensus 272 ddglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 272 DDGLATVLGHEIAHAVARHA 291 (424)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999987643
No 62
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=30.20 E-value=1.2e+02 Score=27.03 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=17.1
Q ss_pred cCceEEEEEeCCCCCcceEEEEEEE
Q 005189 83 EADEILVLEFAETLPTGMGVLAIGF 107 (709)
Q Consensus 83 ~~~~~l~i~l~~~l~~g~~~l~i~y 107 (709)
.....+.+.++.+|.+|.|.|.+..
T Consensus 83 ~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 4455777788888999999999888
No 63
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=29.92 E-value=1.8e+02 Score=28.92 Aligned_cols=116 Identities=9% Similarity=0.050 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH--
Q 005189 568 DRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEK-- 645 (709)
Q Consensus 568 ~r~~li~D~~~la~~g~~~~~~~~~l~~~l~~E~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 645 (709)
-|.+++.-...+.+.|.++.+.+.+++..|-.|-+..|=.......+.+-..++..+. ....+.+.+=+++..+..+
T Consensus 4 kr~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~-~~~~~ldLlP~~Ls~L~~~~~ 82 (223)
T PF14675_consen 4 KRFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDN-KNGKWLDLLPKCLSALSASES 82 (223)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS----S-STTTTHHHHHHHHHHT-S-
T ss_pred HHHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCc-ccchHHHHHHHHHHHHhcCcc
Confidence 4778888888899999999999999999999999999988888888776666553221 1223333333444433333
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 005189 646 LGWDSKPGESHLDALLRGEIFTALALLGH-KETLNEASKRFHA 687 (709)
Q Consensus 646 lg~~~~~~~~~~~~~~r~~i~~~ac~~~~-~~c~~~a~~~f~~ 687 (709)
+.. .+....-...|..+++-.|...= +.|+-.-..+|++
T Consensus 83 i~~---~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd 122 (223)
T PF14675_consen 83 INY---NGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRD 122 (223)
T ss_dssp -SS---SS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGG
T ss_pred ccc---ccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhc
Confidence 211 12223346778888888887763 3566555556654
No 64
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.97 E-value=3.4e+02 Score=31.19 Aligned_cols=94 Identities=14% Similarity=0.107 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH-hccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHhccChH-
Q 005189 549 KDLAARLGYAIEMKQLSETDRFGILDDHFALCM-ARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPE- 626 (709)
Q Consensus 549 ~~~w~~l~~~l~~~~~~~~~r~~li~D~~~la~-~g~~~~~~~~~l~~~l~~E~~~~~w~~~~~~l~~~~~~~~~~~~~- 626 (709)
......|.+.+..+.++..++++++.-+.++++ .-.--.+.+++|++.=.-..+..+|.+++-.+..+.+......+.
T Consensus 356 ~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~ 435 (574)
T smart00638 356 PPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC 435 (574)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 345667777777788998899999887777764 334445556666655444567788998888888776644332221
Q ss_pred ---HHHHHHHHHHHHHHHH
Q 005189 627 ---LLDYLKQFFISLFQNS 642 (709)
Q Consensus 627 ---~~~~~~~~~~~l~~~~ 642 (709)
....+.+|+...+...
T Consensus 436 ~~~~~~~~~~~l~~~l~~~ 454 (574)
T smart00638 436 PDFVLEELLKYLHELLQQA 454 (574)
T ss_pred ChhhHHHHHHHHHHHHHHH
Confidence 1245555555555543
No 65
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=28.38 E-value=31 Score=28.94 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=22.3
Q ss_pred HHHhhCHHHHHHHHHHHHHHhcCCCCCHHHH
Q 005189 402 LQNYLGAECFQRSLASYIKKYACSNAKTEDL 432 (709)
Q Consensus 402 L~~~lG~~~F~~~l~~yl~~~~~~~~~~~dl 432 (709)
++..||++.|....+.|++++.-.+.+..++
T Consensus 55 ~~~llG~~~f~~la~~y~~~~p~~s~~l~~~ 85 (94)
T PF09836_consen 55 VRALLGEEFFDALARAYIRAHPSRSPDLNDY 85 (94)
T ss_dssp GGGGS-HHHHHHHHHHHHHSGGGG-S-GGGH
T ss_pred HHHHhCHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 4667899999999999999987666554433
No 66
>PF15641 Tox-MPTase5: Metallopeptidase toxin 5
Probab=28.33 E-value=99 Score=25.25 Aligned_cols=18 Identities=28% Similarity=0.768 Sum_probs=12.2
Q ss_pred HHHHHHHHHH-HHHHHhcC
Q 005189 299 QRVATVVAHE-LAHQWFGN 316 (709)
Q Consensus 299 ~~~~~~iaHE-laHqWfGn 316 (709)
..+..++.|| +-|-||--
T Consensus 62 a~lr~~iiheelhhrw~~r 80 (109)
T PF15641_consen 62 AELRNTIIHEELHHRWWKR 80 (109)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456677776 77888853
No 67
>PF13205 Big_5: Bacterial Ig-like domain
Probab=27.16 E-value=3.7e+02 Score=22.44 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.2
Q ss_pred cCceEEEEEeCCCCCcc-eEEEEEEEE
Q 005189 83 EADEILVLEFAETLPTG-MGVLAIGFE 108 (709)
Q Consensus 83 ~~~~~l~i~l~~~l~~g-~~~l~i~y~ 108 (709)
..+..+.|.+.++|.+| .|+|.|.-.
T Consensus 59 ~~~~~~~i~p~~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 59 WDGNTLTITPSQPLKPGTTYTVTIDSG 85 (107)
T ss_pred ccCCEEEEEECCcCCCCCEEEEEECCC
Confidence 56689999999999999 999999554
No 68
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=27.08 E-value=2.7e+02 Score=23.86 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=20.7
Q ss_pred cCceEEEEEeCCCCCcceEEEEEE--EEe
Q 005189 83 EADEILVLEFAETLPTGMGVLAIG--FEG 109 (709)
Q Consensus 83 ~~~~~l~i~l~~~l~~g~~~l~i~--y~g 109 (709)
.....|.+.+|..|.+|+|.|.|. |.+
T Consensus 61 N~ps~l~~~lPa~L~~G~Y~l~V~Tq~~~ 89 (102)
T PF14734_consen 61 NKPSRLIFILPADLAAGEYTLEVRTQYSG 89 (102)
T ss_pred CCCcEEEEECcCccCceEEEEEEEEEecC
Confidence 344578889999999999888774 555
No 69
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=26.55 E-value=1.4e+02 Score=31.16 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCC--------CCCccEEEecCCCCcccc-cccceeeecccccccCCCCcHHHHHHHH
Q 005189 232 QGKFALNVAVKTLELYKEYFAVPYS--------LPKLDMIAIPDFAAGAME-NYGLVTYRETALLYDDQHSAAANKQRVA 302 (709)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~fg~~yP--------~~kld~v~~p~~~~gamE-~~gli~~~e~~ll~~~~~~~~~~~~~~~ 302 (709)
..+..++...++++...++.|.+.+ .++..+|.-.....|.|- ..+-|.+.... .+.- -.......-.
T Consensus 144 d~~~ll~~~D~ii~~~~el~Gl~~~~~~~~~~~~~~~r~v~~v~~~~g~m~a~g~~i~~~~~~--~~~~-l~~~~~~~~~ 220 (307)
T PF13402_consen 144 DPEELLRFWDRIIDAEYELAGLDKSSPGPENNPMPNNRFVFDVQISAGYMHASGYPIGFPPNW--MNEL-LNPNPLRKGG 220 (307)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-BSS--GGGB--S--EEEEEETT----SEEEETTEEEEETT----HHH-H-HHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCccccCcccceEEEeccccccceeecCCcEEeeCcH--Hhcc-cCHhHcCCCC
Confidence 3456677778889999999998773 223367776777667776 33334443320 0000 0001111135
Q ss_pred HHHHHHHHHHHhcCCCCccccchhHHhhhHHHHHHHHHHhhhCc
Q 005189 303 TVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP 346 (709)
Q Consensus 303 ~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~ 346 (709)
-.+.||+.|+-= ..+=.|.. +-|.-.+.++........+
T Consensus 221 WG~~HE~GH~~Q---~~~~~~~g--~~EvTnNi~sl~~~~~~~~ 259 (307)
T PF13402_consen 221 WGPWHELGHNHQ---QGPWTWSG--MGEVTNNIYSLYVQEKFGN 259 (307)
T ss_dssp HHHHHHHHHHH----BGGG--TT---TTTTHHHHHHHHHHHTT-
T ss_pred eeehhhhhhhcC---ccccccCC--CCchhhHHHHHHHHHHHhc
Confidence 679999999852 22111443 6788888888776665543
No 70
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=25.81 E-value=44 Score=32.52 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=19.6
Q ss_pred cccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005189 287 LYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (709)
Q Consensus 287 l~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (709)
+|++........-.+-.+|||||+|-.-...+.
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~~ 54 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGIN 54 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 344444444455567789999999976544433
No 71
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=25.58 E-value=2.3e+02 Score=27.90 Aligned_cols=39 Identities=18% Similarity=-0.014 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhcCCCC-----ccccchhHHhhhHHHHHHHH
Q 005189 301 VATVVAHELAHQWFGNLVT-----MEWWTHLWLNEGFATWVSYL 339 (709)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt-----~~~w~d~WLnEGfA~y~~~~ 339 (709)
-..++||||+|-|+....- ...|...=..|--|++++..
T Consensus 72 ~rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FAa~ 115 (213)
T COG2856 72 KRFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFAAE 115 (213)
T ss_pred HHHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHHHH
Confidence 4578999999999985431 11123333456677776644
No 72
>PRK15245 type III effector phosphothreonine lyase; Provisional
Probab=25.03 E-value=1.9e+02 Score=28.00 Aligned_cols=116 Identities=17% Similarity=0.243 Sum_probs=63.6
Q ss_pred ccCCCCCceEE---EEEEEe-----CCCCeEeecCccceeeecCCeEEEEEecCCCccceEEEEEEeeeEEEEeecCCCe
Q 005189 148 CWDEPACKATF---KITLDV-----PSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGI 219 (709)
Q Consensus 148 c~DeP~~ka~f---~l~i~~-----p~~~~aisn~~~~~~~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~ 219 (709)
|-++|..|..| ++.|.+ |..+.+++.....+...-+.|+.+.-..-+ ... ...-|.
T Consensus 90 ~R~~~q~kGefaGDK~HiSV~~~qv~qAF~als~lLfSeDSPiDKWKVTDM~rv~---------------qqs-RV~~GA 153 (241)
T PRK15245 90 RRESPQSKGDFAGDKFHISVARDQVPQAFQALSGLLFSEDSPVDKWKVTDMERVS---------------QQS-RVGLGA 153 (241)
T ss_pred cccCccccccccCceEEEEecHHHHHHHHHHhhhhhcCCCCCcceeeeccccccC---------------ccc-hhcccc
Confidence 45666555544 444444 445667765444333333344444222211 111 223478
Q ss_pred EEEEEEeCCccc--hHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecc
Q 005189 220 KVRVYCQVGKAN--QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRET 284 (709)
Q Consensus 220 ~v~v~~~~~~~~--~~~~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~~gamE~~gli~~~e~ 284 (709)
.+++|..|+..+ .....+..++..++.+|..++-. - +.==..|.- .-.-|||..+.||.+
T Consensus 154 QfTLYvKpd~edsqYsa~~l~k~r~Fie~lE~~L~~~-g---i~pG~~P~S-DV~pe~W~y~SYRNE 215 (241)
T PRK15245 154 QFTLYVKPDQENSQYSASFLHKTRQFIECLESRLSEN-G---VISGQCPES-DVHPENWKYLSYRNE 215 (241)
T ss_pred eEEEEecCccccccCCHHHHHHHHHHHHHHHHHHHHc-C---CCCCCCCcc-ccCccccceeeehhh
Confidence 999999997753 23455788889999999887611 0 000001221 124589999999977
No 73
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=24.32 E-value=86 Score=30.31 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHH
Q 005189 299 QRVATVVAHELAHQ 312 (709)
Q Consensus 299 ~~~~~~iaHElaHq 312 (709)
...+.++||||+|.
T Consensus 129 ~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 129 LSFAVIIAHELGHN 142 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 35788999999995
No 74
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=24.29 E-value=2.8e+02 Score=26.32 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 005189 298 KQRVATVVAHELAHQWFG 315 (709)
Q Consensus 298 ~~~~~~~iaHElaHqWfG 315 (709)
+..+..+|+|||.|.|=-
T Consensus 68 ~~~l~~~l~HELIHayD~ 85 (173)
T PF09768_consen 68 QGHLEDTLTHELIHAYDH 85 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445789999999998843
No 75
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=24.27 E-value=1.8e+02 Score=28.61 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q 005189 301 VATVVAHELAHQW 313 (709)
Q Consensus 301 ~~~~iaHElaHqW 313 (709)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4689999999985
No 76
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=23.75 E-value=2.4e+02 Score=29.97 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=67.4
Q ss_pred hHHHHHHHHH-HHHHhccCCHHHHHHHHHhccCCCc--------HHHHHHHH----HHHHHHHHHHhccChHHHHHHHHH
Q 005189 568 DRFGILDDHF-ALCMARQQTLTSLLTLMASYSEETE--------YTVLSNLI----TISYKIGRIAADARPELLDYLKQF 634 (709)
Q Consensus 568 ~r~~li~D~~-~la~~g~~~~~~~~~l~~~l~~E~~--------~~~w~~~~----~~l~~~~~~~~~~~~~~~~~~~~~ 634 (709)
++-|+|||+- +|.-+..++|..-|.|+.--..|.. ..+|+-.. .-|..|...+... |+..+
T Consensus 319 ~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~-p~l~n----- 392 (487)
T KOG2653|consen 319 DKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRN-PDLAN----- 392 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcC-ccHhh-----
Confidence 4899999994 5666777899999999876555543 24454331 1123344444332 22211
Q ss_pred HHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCCCCCCcccce
Q 005189 635 FISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRK 703 (709)
Q Consensus 635 ~~~l~~~~~~~lg~~~~~~~~~~~~~~r~~i~~~ac~~~~~-~c~~~a~~~f~~~~~~~~~~~i~~~lr~ 703 (709)
-++.+.|.+.- ...+...|. ++..|...|.+ +|...|...|+-|.+ ..+|+||-.
T Consensus 393 --ll~d~fF~~~v-------~~~q~~wr~-vV~~a~~~gIptP~~st~Lafydgyr~----e~lpaNllQ 448 (487)
T KOG2653|consen 393 --LLLDPFFAKAV-------EEAQDSWRR-VVALAVEAGIPTPAFSTALAFYDGYRS----ERLPANLLQ 448 (487)
T ss_pred --hccCHHHHHHH-------HHHHHHHHH-HHHHHHhcCCCChhHHHHHHHHhhhhh----hcCcHHHHH
Confidence 12222222210 011223444 45677888987 999999999999864 357877754
No 77
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=23.61 E-value=2.5e+02 Score=30.20 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=45.0
Q ss_pred HHHHHHhCCCCCCCCccEEEecCCCCcccccccceeeecccccccCCCCcHHHHHHHHHHHHHHHHH-------------
Q 005189 245 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH------------- 311 (709)
Q Consensus 245 ~~~e~~fg~~yP~~kld~v~~p~~~~gamE~~gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaH------------- 311 (709)
+.+..|++ . .+..+...++..+++|-.-.-|.++.+..+ ....+..++.||+.=
T Consensus 145 ~~~~~y~~-~---~~~~V~~sd~l~a~a~v~~~~l~i~~~a~f---------s~~~l~~L~~HEigvH~~T~~Ng~~Qp~ 211 (366)
T TIGR02421 145 QRLEDYFG-E---ETIRVTLSDDLPAGAMVSGDKLKLNSDAMF---------SERDLEALIHHEIGVHLLTTLNGRAQPL 211 (366)
T ss_pred HHHHHhCC-C---CceEEEECcchhHHHhccCCeEEECCCCCc---------CHHHHHHHHHHhHHhhhhhccccccCch
Confidence 33445555 2 345555557777888877655555544221 233578899999862
Q ss_pred HHhcCCCCccccchhHHhhhHHHHHHHHH
Q 005189 312 QWFGNLVTMEWWTHLWLNEGFATWVSYLA 340 (709)
Q Consensus 312 qWfGnlVt~~~w~d~WLnEGfA~y~~~~~ 340 (709)
.||+...-. ..=..||+|.+.|++.
T Consensus 212 ~~l~~G~p~----~t~tQEGLAvl~E~l~ 236 (366)
T TIGR02421 212 RLLSIGLPG----YTATQEGLAILAEYLA 236 (366)
T ss_pred HHHhcCCCC----CCCccHHHHHHHHHHh
Confidence 233322111 1123799999999763
No 78
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=23.00 E-value=58 Score=31.38 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q 005189 299 QRVATVVAHELAHQW 313 (709)
Q Consensus 299 ~~~~~~iaHElaHqW 313 (709)
.....++||||+|.+
T Consensus 140 ~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 140 YNGAITFAHEIGHNL 154 (196)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CceehhhHHhHHHhc
Confidence 346789999999987
No 79
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=22.60 E-value=86 Score=23.21 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCCHH
Q 005189 408 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVN 445 (709)
Q Consensus 408 ~~~F~~~l~~yl~~~~~~~~~~~dl~~~l~~~sg~~l~ 445 (709)
++..+..++.+++.--..++|..++.+.+++..|.|++
T Consensus 2 d~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~dL~ 39 (54)
T PF08766_consen 2 DEEIREAIREILREADLDTVTKKQVREQLEERFGVDLS 39 (54)
T ss_dssp HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS--S
T ss_pred HHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCCCcH
Confidence 56678899999999888899999999999999998875
No 80
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=21.42 E-value=2.2e+02 Score=33.63 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=43.5
Q ss_pred EEEEEEeCCccchHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEecCCC--Cccccccc-cee--eecccccccCCCCc
Q 005189 220 KVRVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFA--AGAMENYG-LVT--YRETALLYDDQHSA 294 (709)
Q Consensus 220 ~v~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yP~~kld~v~~p~~~--~gamE~~g-li~--~~e~~ll~~~~~~~ 294 (709)
.+.+|..++.....+.+.+.....+.+=..++...-|.+-..++..-.|. ..|+...| +-. ++.....+.++
T Consensus 242 ~lE~Wt~~dki~~~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~~~--- 318 (716)
T KOG3607|consen 242 GLEIWTDGNKIDVSEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFHSD--- 318 (716)
T ss_pred EEEecCCCCeecccccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecCcc---
Confidence 35678888776666556666666666655556533344443333321221 12222222 111 11110111111
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005189 295 AANKQRVATVVAHELAHQ 312 (709)
Q Consensus 295 ~~~~~~~~~~iaHElaHq 312 (709)
.....+.++||||+|-
T Consensus 319 --~~~~~a~v~AhelgH~ 334 (716)
T KOG3607|consen 319 --ILLAFAVVLAHELGHN 334 (716)
T ss_pred --cchhHHHHHHHHHHhh
Confidence 1234788999999996
Done!