BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005191
(709 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 105/170 (61%), Gaps = 6/170 (3%)
Query: 2 ASCKYDVFLSFRGEDTRDNFLSHLVVALQEKKIKTFIDE-ELTRGDQISPALVKAIEESM 60
+ KYDVFLSFRG DTR NF+S L L + I+TF D+ EL G + SP L IE S
Sbjct: 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSR 64
Query: 61 ISVIIFSKNYASSKWCLDELVKILKCHKKNIQLVIPIFYNVDPSVVRNQTGSFKDAFVKH 120
+V++ S+NYA+S WCLDELV I+ KK V+PIFY V+P+ VR QTG + F KH
Sbjct: 65 FAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKH 124
Query: 121 DKQFNKKMPEKVQKWRAVLTEASNLSGWDSNTTRPDAKLVKEITADILEK 170
+++ PEKV KWR LT + LSG + D+KLV +I +I K
Sbjct: 125 A---SREDPEKVLKWRQALTNFAQLSG--DCSGDDDSKLVDKIANEISNK 169
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 1 MASCKYDVFLSFRGEDTRDNFLSHLVVALQEKKIKTFIDE-ELTRGDQISPALVKAIEES 59
S +Y+VFLSFRG DTR+ F L +L+ KI TF D+ EL +G +I P L++AI++S
Sbjct: 31 FPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQS 90
Query: 60 MISVIIFSKNYASSKWCLDELVKILKCHKKNI-QLVIPIFYNVDPSVVRNQTGSFKDAFV 118
I V I S YA SKWCL EL +I++ +++ ++++PIFY VDPS VR+QTG +K AF
Sbjct: 91 KIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFR 150
Query: 119 KHDKQFNKKMPEKVQKWRAVLTEASNLSGWDSNTTRPDAKLVKEITADILEKLEK 173
KH +F+ + +Q W+ L + +L GW + +++ADI + K
Sbjct: 151 KHANKFDGQT---IQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISK 202
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 138/329 (41%), Gaps = 58/329 (17%)
Query: 208 VGIWGMGGIGKTTIAGVVFNQFS---QKFEGKYFMANVREESEKCGGLVHLRNQVLSKLL 264
V I+GM G GK+ +A S F G ++ ++ +K G L+ L+N +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ-DKSGLLMKLQNLCMRLDQ 208
Query: 265 GENFDIGTPKIPQYIRDRLQRM------KVFIVLDDVNKYGQLEYFDGGLDRFGPGSRII 318
E+F P + +DRL+ + + ++LDDV L+ FD +I+
Sbjct: 209 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDN-------QCQIL 261
Query: 319 VTTRDKTILER-YGTHRIYEVE-GLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAK 376
+TTRDK++ + G + VE GL + L + + N EDL + + K
Sbjct: 262 LTTRDKSVTDSVMGPKHVVPVESGLGREKGLEIL---SLFVNMKKEDLPAEAHSIIKECK 318
Query: 377 GNPLALQVLGSSFHRKSKPDWVNTLNNL-----KRISDSDIYG------VLKIGYDELSW 425
G+PL + ++G+ R W L L KRI S Y + I + L
Sbjct: 319 GSPLVVSLIGALL-RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE 377
Query: 426 EEKNLFLDIACFFNGDDREH-----VMWILNDDYYSVQYGLNVLVNKSLIKISYNK---- 476
+ K+ + D++ D + V+W L + V+ L VNKSL+ + N
Sbjct: 378 DIKDYYTDLS-ILQKDVKVPTKVLCVLWDLETE--EVEDILQEFVNKSLLFCNRNGKSFC 434
Query: 477 LQMHDL------------LQEMGREIVCQ 493
+HDL LQ++ R++V Q
Sbjct: 435 YYLHDLQVDFLTEKNRSQLQDLHRKMVTQ 463
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 137/329 (41%), Gaps = 58/329 (17%)
Query: 208 VGIWGMGGIGKTTIAGVVFNQFS---QKFEGKYFMANVREESEKCGGLVHLRNQVLSKLL 264
V I+GM G GK+ +A S F G ++ ++ +K G L+ L+N +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ-DKSGLLMKLQNLCMRLDQ 215
Query: 265 GENFDIGTPKIPQYIRDRLQRM------KVFIVLDDVNKYGQLEYFDGGLDRFGPGSRII 318
E+F P + +DRL+ + + ++LDDV L+ FD +I+
Sbjct: 216 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDN-------QCQIL 268
Query: 319 VTTRDKTILER-YGTHRIYEVE-GLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAK 376
+TT DK++ + G + VE GL + L + + N EDL + + K
Sbjct: 269 LTTSDKSVTDSVMGPKHVVPVESGLGREKGLEIL---SLFVNMKKEDLPAEAHSIIKECK 325
Query: 377 GNPLALQVLGSSFHRKSKPDWVNTLNNL-----KRISDSDIYG------VLKIGYDELSW 425
G+PL + ++G+ R W L L KRI S Y + I + L
Sbjct: 326 GSPLVVSLIGALL-RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE 384
Query: 426 EEKNLFLDIACFFNGDDREH-----VMWILNDDYYSVQYGLNVLVNKSLIKISYNK---- 476
+ K+ + D++ D + V+W L + V+ L VNKSL+ + N
Sbjct: 385 DIKDYYTDLS-ILQKDVKVPTKVLCVLWDLETE--EVEDILQEFVNKSLLFCNRNGKSFC 441
Query: 477 LQMHDL------------LQEMGREIVCQ 493
+HDL LQ++ R++V Q
Sbjct: 442 YYLHDLQVDFLTEKNRSQLQDLHRKMVTQ 470
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 143/349 (40%), Gaps = 54/349 (15%)
Query: 208 VGIWGMGGIGKTTIAGVVFNQFSQK---FEGKYFMANVREESEKCGGLVHLRNQVLSKLL 264
V I GM G GK+ +A S F G +V ++ +K G L+ L+N
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQ 214
Query: 265 GENFDIGTPKIPQYIRDRLQRM------KVFIVLDDVNKYGQLEYFDGGLDRFGPGSRII 318
E+F P + +DRL+ + + ++LDDV L+ FD +I+
Sbjct: 215 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQ-------CQIL 267
Query: 319 VTTRDKTILER-YGTHRIYEVE-------GLNCNEALRLFCSCAFKENHCPEDLLKHSET 370
+TTRDK++ + G + VE GL E L LF N DL + + +
Sbjct: 268 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGL---EILSLFV------NMKKADLPEQAHS 318
Query: 371 AAHYAKGNPLALQVLGSSFHRKSKPDWVNTLNNL-----KRISDSDIYG------VLKIG 419
KG+PL + ++G+ R W L L KRI S Y + I
Sbjct: 319 IIKECKGSPLVVSLIGALL-RDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS 377
Query: 420 YDELSWEEKNLFLDIACFFNGDDR--EHVMWILND-DYYSVQYGLNVLVNKSLIKISYN- 475
+ L + K+ + D++ D + V+ IL D + V+ L VNKSL+ N
Sbjct: 378 VEMLREDIKDYYTDLS-ILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNG 436
Query: 476 ---KLQMHDLLQEMGREIVCQEFREKPEKRSRLWDHKDVCHVLEKNKED 521
+ +HDL + E C + ++ +K + H L ++ED
Sbjct: 437 KSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQED 485
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 143/349 (40%), Gaps = 54/349 (15%)
Query: 208 VGIWGMGGIGKTTIAGVVFNQFSQK---FEGKYFMANVREESEKCGGLVHLRNQVLSKLL 264
V I GM G GK+ +A S F G +V ++ +K G L+ L+N
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQ 208
Query: 265 GENFDIGTPKIPQYIRDRLQRM------KVFIVLDDVNKYGQLEYFDGGLDRFGPGSRII 318
E+F P + +DRL+ + + ++LDDV L+ FD +I+
Sbjct: 209 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQ-------CQIL 261
Query: 319 VTTRDKTILER-YGTHRIYEVE-------GLNCNEALRLFCSCAFKENHCPEDLLKHSET 370
+TTRDK++ + G + VE GL E L LF N DL + + +
Sbjct: 262 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGL---EILSLFV------NMKKADLPEQAHS 312
Query: 371 AAHYAKGNPLALQVLGSSFHRKSKPDWVNTLNNL-----KRISDSDIYG------VLKIG 419
KG+PL + ++G+ R W L L KRI S Y + I
Sbjct: 313 IIKECKGSPLVVSLIGALL-RDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS 371
Query: 420 YDELSWEEKNLFLDIACFFNGDDR--EHVMWILND-DYYSVQYGLNVLVNKSLIKISYN- 475
+ L + K+ + D++ D + V+ IL D + V+ L VNKSL+ N
Sbjct: 372 VEMLREDIKDYYTDLS-ILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNG 430
Query: 476 ---KLQMHDLLQEMGREIVCQEFREKPEKRSRLWDHKDVCHVLEKNKED 521
+ +HDL + E C + ++ +K + H L ++ED
Sbjct: 431 KSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQED 479
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 6 YDVFLSFRGEDTRDNFLSHLVVALQEKKIKTFIDE-ELTRGDQISPALVKAIEESMISVI 64
+D+F+S ED D F+ L L+ + + D+ L GD + ++ K + S ++
Sbjct: 21 HDIFISHAWEDKAD-FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIV 79
Query: 65 IFSKNYASSKWCLDELVKILKCHKKNIQLVIPIFYNVDPSVVRNQTGSFKD 115
+ S ++ +W EL + + ++PI++ V V + + + D
Sbjct: 80 VLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 25/123 (20%)
Query: 192 EQVRSLLAIGLPDVRL-----VGIWGMGGIGKTTIAGVVFNQFSQKFEGKY--FMANVRE 244
+Q+R + +I P R + I+G+ G GKT + V ++ +KF GK+ N R+
Sbjct: 27 DQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86
Query: 245 ESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRM---------KVFIVLDDV 295
+ +VL+ LL E+ D+ P I + +R+ +V IVLD++
Sbjct: 87 --------IDTPYRVLADLL-ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEI 137
Query: 296 NKY 298
+ +
Sbjct: 138 DAF 140
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 26/120 (21%)
Query: 202 LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFM--ANVREESEKCGGLVHLRNQV 259
+P + V + G G GK+TIA ++ +F EG+ M ++RE + L LRNQV
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLI-TRFYDIDEGEILMDGHDLREYT-----LASLRNQV 419
Query: 260 LSKLLGENF---------DIGTPKIPQYIRDRLQR-MKVFIVLDDVNKYGQLEYFDGGLD 309
L+ +N +I + QY R++++ ++ +D +NK D GLD
Sbjct: 420 --ALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINK------MDNGLD 471
>pdb|2Z72|A Chain A, New Structure Of Cold-Active Protein Tyrosine Phosphatase
At 1.1 Angstrom
Length = 342
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 155 PDAKL---VKEITADILEKLEKLSAAISDSDGLIGLESHVEQVRSLLAIGLPDVRLV--- 208
P+ KL +K+I D ++K+ A+SD G Q LL + L +++
Sbjct: 51 PETKLSSEIKQIMPDTYLGIKKV-VALSDVHG---------QYDVLLTL-LKKQKIIDSD 99
Query: 209 GIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHL 255
G W G G + G +F++ Q E +FM + +++ GG+VHL
Sbjct: 100 GNWAFGE-GHMVMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHL 145
>pdb|1V73|A Chain A, Crystal Structure Of Cold-Active Protein-Tyrosine
Phosphatase Of A Psychrophile Shewanella Sp
Length = 342
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 155 PDAKL---VKEITADILEKLEKLSAAISDSDGLIGLESHVEQVRSLLAIGLPDVRLV--- 208
P+ KL +K+I D ++K+ A+SD G Q LL + L +++
Sbjct: 51 PETKLSSEIKQIMPDTYLGIKKV-VALSDVHG---------QYDVLLTL-LKKQKIIDSD 99
Query: 209 GIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHL 255
G W G G + G +F++ Q E +FM + +++ GG+VHL
Sbjct: 100 GNWAFGE-GHMVMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHL 145
>pdb|3QTP|A Chain A, Crystal Structure Analysis Of Entamoeba Histolytica
Enolase
pdb|3QTP|B Chain B, Crystal Structure Analysis Of Entamoeba Histolytica
Enolase
Length = 441
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 6 YDVFLSFRGEDTRDNFLSHLVVALQEKKIKTFI---DEELTRGDQISPALVKAIEESMIS 62
+ V S R +T D F++ LVV L K+IKT E L + +Q+ IEE + +
Sbjct: 374 WGVMASHRSGETEDTFIADLVVGLNCKQIKTGAPCRSERLCKYNQL-----MRIEEELGN 428
Query: 63 VIIFSKNYASS 73
+ KN+ +S
Sbjct: 429 IPYAGKNWRNS 439
>pdb|2ZBM|A Chain A, Crystal Structure Of I115m Mutant Cold-Active Protein
Tyrosine Phosphatase
Length = 336
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 155 PDAKL---VKEITADILEKLEKLSAAISDSDGLIGLESHVEQVRSLLAIGLPDVRLV--- 208
P+ KL +K+I D ++K+ A+SD G Q LL + L +++
Sbjct: 51 PETKLSSEIKQIMPDTYLGIKKV-VALSDVHG---------QYDVLLTL-LKKQKIIDSD 99
Query: 209 GIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHL 255
G W G G + G +F++ Q E +FM + +++ GG+VHL
Sbjct: 100 GNWAFGE-GHMVMTGDMFDRGHQVNEVLWFMYQLDQQARDAGGMVHL 145
>pdb|3TQP|A Chain A, Structure Of An Enolase (Eno) From Coxiella Burnetii
pdb|3TQP|B Chain B, Structure Of An Enolase (Eno) From Coxiella Burnetii
Length = 428
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 3 SCKYDVFLSFRGEDTRDNFLSHLVVALQEKKIKTFIDEELTRGDQIS 49
S KY V +S R +T D ++ L VA ++IKT L R D+++
Sbjct: 356 SNKYGVIISHRSGETEDTTIADLAVATDARQIKTG---SLCRSDRVA 399
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 26/120 (21%)
Query: 202 LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFM--ANVREESEKCGGLVHLRNQV 259
+P + V + G G GK+TIA ++ +F EG M ++RE + L LRNQV
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLI-TRFYDIDEGHILMDGHDLREYT-----LASLRNQV 419
Query: 260 LSKLLGENF---------DIGTPKIPQYIRDRLQR-MKVFIVLDDVNKYGQLEYFDGGLD 309
L+ +N +I + +Y R++++ ++ +D +NK D GLD
Sbjct: 420 --ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINK------MDNGLD 471
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
pdb|2O95|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
Length = 187
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 368 SETAAHYAKGNPLALQVLGSSFHRKSKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEE 427
E A +PL L + F+R K + N KR+ GVL +G SW++
Sbjct: 3 PELAVQKVVVHPLVLLSVVDHFNRIGK------VGNQKRV-----VGVL-LG----SWQK 46
Query: 428 KNLFLD--IACFFNGDDREHVMWILNDDYYSVQYGLNVLVN 466
K L + A F+ DD++ +W L+ DY YG+ VN
Sbjct: 47 KVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVN 87
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
pdb|2O96|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
Length = 178
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 368 SETAAHYAKGNPLALQVLGSSFHRKSKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEE 427
E A +PL L + F+R K + N KR+ GVL +G SW++
Sbjct: 3 PELAVQKVVVHPLVLLSVVDHFNRIGK------VGNQKRV-----VGVL-LG----SWQK 46
Query: 428 KNLFLD--IACFFNGDDREHVMWILNDDYYSVQYGLNVLVN 466
K L + A F+ DD++ +W L+ DY YG+ VN
Sbjct: 47 KVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVN 87
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 16/105 (15%)
Query: 208 VGIWGMGGIGKTTIAGVVFNQFSQKF-----------EGKYFMANVREES-EKCGGLVHL 255
+GI+ G+GK+T+ G++ N S E F+A + + + KC +V
Sbjct: 74 IGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133
Query: 256 RNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYGQ 300
++ + + F T I +Y RD Q V +++D V +Y +
Sbjct: 134 SDRPALERMKAAFTATT--IAEYFRD--QGKNVLLMMDSVTRYAR 174
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 26/187 (13%)
Query: 77 LDELVKILKCHKKNIQLVIPIFYNVDPSVVRNQTGSFKDAFVKHDKQFNKKMPEKVQKWR 136
L ++ L+ + +LV+ + ++ S VR + V+ K + P ++
Sbjct: 21 LPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGP 80
Query: 137 AVLTEASNLSGWDSNTTRPDAKLVKEITADILEKLEKLSAAISDSDGLIGLESHVEQVRS 196
L N+ G + P K ++ +A +++ + E VEQ
Sbjct: 81 ETLGRIMNVIGEPIDERGPI-------------KTKQFAAIHAEAPEFV--EMSVEQ--E 123
Query: 197 LLAIGLPDVRL---------VGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE 247
+L G+ V L +G++G G+GKT + + N ++ G A V E +
Sbjct: 124 ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 183
Query: 248 KCGGLVH 254
+ L H
Sbjct: 184 EGNDLYH 190
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 208 VGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVH 254
+G++G G+GKT + + N +Q+ G A V E + + L H
Sbjct: 147 IGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGERTREGNDLYH 193
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 26/187 (13%)
Query: 77 LDELVKILKCHKKNIQLVIPIFYNVDPSVVRNQTGSFKDAFVKHDKQFNKKMPEKVQKWR 136
L ++ L+ + +LV+ + ++ S VR + V+ K + P ++
Sbjct: 33 LPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGP 92
Query: 137 AVLTEASNLSGWDSNTTRPDAKLVKEITADILEKLEKLSAAISDSDGLIGLESHVEQVRS 196
L N+ G + P K ++ +A +++ + E VEQ
Sbjct: 93 ETLGRIMNVIGEPIDERGPI-------------KTKQFAAIHAEAPEFV--EMSVEQ--E 135
Query: 197 LLAIGLPDVRL---------VGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE 247
+L G+ V L +G++G G+GKT + + N ++ G A V E +
Sbjct: 136 ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 195
Query: 248 KCGGLVH 254
+ L H
Sbjct: 196 EGNDLYH 202
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 26/187 (13%)
Query: 77 LDELVKILKCHKKNIQLVIPIFYNVDPSVVRNQTGSFKDAFVKHDKQFNKKMPEKVQKWR 136
L ++ L+ + +LV+ + ++ S VR + V+ K + P ++
Sbjct: 31 LPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGP 90
Query: 137 AVLTEASNLSGWDSNTTRPDAKLVKEITADILEKLEKLSAAISDSDGLIGLESHVEQVRS 196
L N+ G + P K ++ +A +++ + E VEQ
Sbjct: 91 ETLGRIMNVIGEPIDERGPI-------------KTKQFAAIHAEAPEFV--EMSVEQ--E 133
Query: 197 LLAIGLPDVRL---------VGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE 247
+L G+ V L +G++G G+GKT + + N ++ G A V E +
Sbjct: 134 ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 193
Query: 248 KCGGLVH 254
+ L H
Sbjct: 194 EGNDLYH 200
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 26/187 (13%)
Query: 77 LDELVKILKCHKKNIQLVIPIFYNVDPSVVRNQTGSFKDAFVKHDKQFNKKMPEKVQKWR 136
L ++ L+ + +LV+ + ++ S VR + V+ K + P ++
Sbjct: 33 LPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGP 92
Query: 137 AVLTEASNLSGWDSNTTRPDAKLVKEITADILEKLEKLSAAISDSDGLIGLESHVEQVRS 196
L N+ G + P K ++ +A +++ + E VEQ
Sbjct: 93 ETLGRIMNVIGEPIDERGPI-------------KTKQFAAIHAEAPEFV--EMSVEQ--E 135
Query: 197 LLAIGLPDVRL---------VGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE 247
+L G+ V L +G++G G+GKT + + N ++ G A V E +
Sbjct: 136 ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 195
Query: 248 KCGGLVH 254
+ L H
Sbjct: 196 EGNDLYH 202
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 26/187 (13%)
Query: 77 LDELVKILKCHKKNIQLVIPIFYNVDPSVVRNQTGSFKDAFVKHDKQFNKKMPEKVQKWR 136
L ++ L+ + +LV+ + ++ S VR + V+ K + P ++
Sbjct: 79 LPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGP 138
Query: 137 AVLTEASNLSGWDSNTTRPDAKLVKEITADILEKLEKLSAAISDSDGLIGLESHVEQVRS 196
L N+ G + P K ++ +A +++ + E VEQ
Sbjct: 139 ETLGRIMNVIGEPIDERGPI-------------KTKQFAAIHAEAPEFV--EMSVEQ--E 181
Query: 197 LLAIGLPDVRL---------VGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE 247
+L G+ V L +G++G G+GKT + + N ++ G A V E +
Sbjct: 182 ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 241
Query: 248 KCGGLVH 254
+ L H
Sbjct: 242 EGNDLYH 248
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 26/187 (13%)
Query: 77 LDELVKILKCHKKNIQLVIPIFYNVDPSVVRNQTGSFKDAFVKHDKQFNKKMPEKVQKWR 136
L ++ L+ + +LV+ + ++ S VR + V+ K + P ++
Sbjct: 33 LPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGP 92
Query: 137 AVLTEASNLSGWDSNTTRPDAKLVKEITADILEKLEKLSAAISDSDGLIGLESHVEQVRS 196
L N+ G + P K ++ +A +++ + E VEQ
Sbjct: 93 ETLGRIMNVIGEPIDERGPI-------------KTKQFAAIHAEAPEFV--EMSVEQ--E 135
Query: 197 LLAIGLPDVRL---------VGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE 247
+L G+ V L +G++G G+GKT + + N ++ G A V E +
Sbjct: 136 ILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 195
Query: 248 KCGGLVH 254
+ L H
Sbjct: 196 EGNDLYH 202
>pdb|1V29|B Chain B, Crystal Structure Of Nitrile Hydratase From A Thermophile
Bacillus Smithii
Length = 229
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 456 SVQYGLNVLVNKSLIKISYNKLQMHDLLQEMGREIVCQEFREKPEKRSRLWDHKDVCHVL 515
V Y + + ++YN L+ +L E E Q F EKP+ + + W++ + V+
Sbjct: 64 PVDYLTSSYYGHWIATVAYNLLET-GVLDEKELEDRTQAFMEKPDTKIQRWENPKLVKVV 122
Query: 516 EKNKEDSYSP 525
EK + SP
Sbjct: 123 EKALLEGLSP 132
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 28/188 (14%)
Query: 77 LDELVKILKCHKKNIQLVIPIFYNVDPSVVRNQTGSFKDAFVKHDKQFNKKMPEKVQKWR 136
L ++ L+ + +LV+ + ++ S VR + V+ K + P K+
Sbjct: 29 LPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGP 88
Query: 137 AVLTEASNLSGWDSNTTRP-DAKLVKEITADILEKLEKLSAAISDSDGLIGLESHVEQVR 195
L N+ G + P K I A+ E +E VEQ
Sbjct: 89 ETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEM----------------SVEQ-- 130
Query: 196 SLLAIGLPDVRL---------VGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREES 246
+L G+ V L +G++G G+GKT + + N ++ G A V E +
Sbjct: 131 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 190
Query: 247 EKCGGLVH 254
+ L H
Sbjct: 191 REGNDLYH 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,815,260
Number of Sequences: 62578
Number of extensions: 956745
Number of successful extensions: 2366
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2353
Number of HSP's gapped (non-prelim): 40
length of query: 709
length of database: 14,973,337
effective HSP length: 106
effective length of query: 603
effective length of database: 8,340,069
effective search space: 5029061607
effective search space used: 5029061607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)