Query 005191
Match_columns 709
No_of_seqs 602 out of 3385
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 19:33:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4.1E-89 8.9E-94 837.0 51.1 528 2-537 9-547 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 6.3E-49 1.4E-53 460.0 25.6 413 185-612 161-618 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.3E-37 2.8E-42 327.9 16.4 266 187-457 1-283 (287)
4 PLN03194 putative disease resi 100.0 1.8E-37 3.8E-42 291.9 15.2 153 3-173 24-179 (187)
5 PF01582 TIR: TIR domain; Int 99.8 4.7E-20 1E-24 172.9 4.6 133 8-140 1-140 (141)
6 smart00255 TIR Toll - interleu 99.8 1.6E-18 3.5E-23 162.2 11.4 136 5-143 1-138 (140)
7 PRK04841 transcriptional regul 99.6 5.2E-14 1.1E-18 171.7 26.3 297 176-494 8-335 (903)
8 PF13676 TIR_2: TIR domain; PD 99.5 3.6E-15 7.9E-20 131.6 2.8 87 8-100 1-87 (102)
9 COG3899 Predicted ATPase [Gene 99.4 1.5E-12 3.2E-17 154.6 17.5 325 183-520 1-407 (849)
10 PRK00411 cdc6 cell division co 99.4 1.4E-10 3.1E-15 127.9 25.7 284 178-473 26-358 (394)
11 COG2909 MalT ATP-dependent tra 99.3 1.7E-10 3.8E-15 130.5 20.1 295 176-495 13-342 (894)
12 TIGR02928 orc1/cdc6 family rep 99.2 2.8E-09 6E-14 116.4 26.7 284 178-473 11-350 (365)
13 PF01637 Arch_ATPase: Archaeal 99.2 1.9E-11 4E-16 124.1 8.3 196 184-385 1-234 (234)
14 TIGR00635 ruvB Holliday juncti 99.2 3.3E-10 7.1E-15 120.5 17.9 263 182-473 4-289 (305)
15 PRK00080 ruvB Holliday junctio 99.2 2E-10 4.3E-15 123.3 15.4 273 178-473 21-310 (328)
16 TIGR03015 pepcterm_ATPase puta 99.1 3.8E-09 8.2E-14 110.2 17.2 179 204-389 42-242 (269)
17 COG3903 Predicted ATPase [Gene 99.1 1E-10 2.2E-15 123.2 4.8 281 204-494 13-317 (414)
18 PF05729 NACHT: NACHT domain 99.0 2.9E-09 6.3E-14 102.0 11.2 143 206-354 1-163 (166)
19 COG2256 MGS1 ATPase related to 98.8 8.1E-08 1.8E-12 101.0 12.9 235 182-450 30-289 (436)
20 PRK13342 recombination factor 98.7 9.9E-07 2.1E-11 97.8 19.6 180 179-388 9-199 (413)
21 PRK06893 DNA replication initi 98.7 2.6E-07 5.7E-12 93.9 13.4 154 205-389 39-207 (229)
22 PTZ00112 origin recognition co 98.6 1.2E-06 2.5E-11 100.7 18.9 244 178-436 751-1031(1164)
23 TIGR03420 DnaA_homol_Hda DnaA 98.6 8.7E-07 1.9E-11 89.8 13.9 176 181-389 14-205 (226)
24 PRK07471 DNA polymerase III su 98.5 6E-06 1.3E-10 89.4 20.0 201 177-386 14-239 (365)
25 COG1474 CDC6 Cdc6-related prot 98.5 1E-05 2.2E-10 87.6 20.4 282 177-473 12-334 (366)
26 PF13173 AAA_14: AAA domain 98.5 8.3E-07 1.8E-11 81.6 10.4 120 205-346 2-127 (128)
27 PRK07003 DNA polymerase III su 98.5 3.1E-06 6.7E-11 96.9 17.0 193 179-384 13-220 (830)
28 PRK14961 DNA polymerase III su 98.5 5.1E-06 1.1E-10 90.5 17.7 193 179-384 13-219 (363)
29 PRK12402 replication factor C 98.5 3.8E-06 8.2E-11 90.6 16.5 199 179-384 12-225 (337)
30 PF14516 AAA_35: AAA-like doma 98.5 7E-05 1.5E-09 80.4 25.7 281 177-483 6-324 (331)
31 PRK00440 rfc replication facto 98.5 5E-06 1.1E-10 88.8 16.8 183 180-384 15-202 (319)
32 PRK04195 replication factor C 98.4 5.2E-06 1.1E-10 93.9 17.5 186 178-389 10-206 (482)
33 PRK12323 DNA polymerase III su 98.4 6.1E-06 1.3E-10 93.4 17.6 200 178-385 12-225 (700)
34 PRK14963 DNA polymerase III su 98.4 7.7E-06 1.7E-10 92.2 18.5 189 179-383 11-215 (504)
35 KOG3678 SARM protein (with ste 98.4 4.1E-07 9E-12 96.0 7.5 92 1-98 608-708 (832)
36 PTZ00202 tuzin; Provisional 98.4 1.2E-05 2.7E-10 86.3 17.7 166 176-354 256-434 (550)
37 PLN03025 replication factor C 98.4 7.5E-06 1.6E-10 87.6 16.4 184 178-382 9-197 (319)
38 PF05496 RuvB_N: Holliday junc 98.4 2.9E-06 6.3E-11 83.9 11.6 181 178-390 20-226 (233)
39 PF13191 AAA_16: AAA ATPase do 98.4 5.9E-07 1.3E-11 87.8 6.6 50 183-232 1-51 (185)
40 PRK14960 DNA polymerase III su 98.3 1.7E-05 3.6E-10 90.2 17.8 192 179-383 12-217 (702)
41 TIGR01242 26Sp45 26S proteasom 98.3 4.8E-06 1.1E-10 90.8 13.2 175 179-379 119-328 (364)
42 PRK08903 DnaA regulatory inact 98.3 4.9E-06 1.1E-10 84.5 12.4 174 180-389 16-203 (227)
43 PRK09112 DNA polymerase III su 98.3 6.8E-06 1.5E-10 88.5 13.8 197 177-386 18-241 (351)
44 TIGR02397 dnaX_nterm DNA polym 98.3 1.3E-05 2.8E-10 87.1 15.8 185 179-387 11-220 (355)
45 PRK08727 hypothetical protein; 98.3 8.6E-06 1.9E-10 83.0 13.4 169 181-382 18-201 (233)
46 PRK05564 DNA polymerase III su 98.3 1.7E-05 3.8E-10 84.6 16.1 178 182-385 4-190 (313)
47 PF13401 AAA_22: AAA domain; P 98.3 3.2E-06 6.9E-11 77.7 9.1 113 204-323 3-125 (131)
48 cd00009 AAA The AAA+ (ATPases 98.3 6.2E-06 1.3E-10 76.4 11.2 122 185-324 1-130 (151)
49 PRK08691 DNA polymerase III su 98.3 1.1E-05 2.4E-10 92.3 15.0 195 178-385 12-220 (709)
50 PF00308 Bac_DnaA: Bacterial d 98.3 1.4E-05 3.1E-10 80.5 14.0 163 204-388 33-211 (219)
51 PRK14949 DNA polymerase III su 98.3 1.1E-05 2.3E-10 94.4 14.6 190 179-384 13-219 (944)
52 PRK14956 DNA polymerase III su 98.2 2E-05 4.3E-10 87.1 15.0 191 179-382 15-219 (484)
53 PRK07940 DNA polymerase III su 98.2 2.4E-05 5.3E-10 85.4 15.6 186 182-385 5-213 (394)
54 PRK14951 DNA polymerase III su 98.2 5.6E-05 1.2E-09 86.7 18.9 199 179-385 13-225 (618)
55 PRK05642 DNA replication initi 98.2 2.2E-05 4.8E-10 80.0 13.6 154 205-389 45-212 (234)
56 PRK14962 DNA polymerase III su 98.2 5.7E-05 1.2E-09 84.5 18.0 197 178-387 10-221 (472)
57 PRK13341 recombination factor 98.2 1.5E-05 3.2E-10 93.4 13.7 173 179-382 25-214 (725)
58 PRK06645 DNA polymerase III su 98.2 5E-05 1.1E-09 85.4 17.3 193 178-382 17-226 (507)
59 PRK14087 dnaA chromosomal repl 98.2 2E-05 4.4E-10 87.9 14.0 167 205-389 141-323 (450)
60 PRK14957 DNA polymerase III su 98.2 2.5E-05 5.5E-10 88.3 14.7 182 179-385 13-221 (546)
61 PRK09087 hypothetical protein; 98.2 2.3E-05 5.1E-10 79.3 12.8 143 205-389 44-199 (226)
62 PRK07994 DNA polymerase III su 98.2 2E-05 4.2E-10 90.6 13.6 194 179-385 13-220 (647)
63 PRK14964 DNA polymerase III su 98.2 6.2E-05 1.3E-09 84.0 17.1 191 179-382 10-214 (491)
64 PRK08084 DNA replication initi 98.1 3.3E-05 7.1E-10 78.9 13.7 155 204-389 44-213 (235)
65 TIGR00678 holB DNA polymerase 98.1 7.2E-05 1.6E-09 73.6 15.6 158 194-380 4-186 (188)
66 KOG2028 ATPase related to the 98.1 3.3E-05 7.2E-10 80.1 13.3 173 181-379 137-330 (554)
67 PRK05896 DNA polymerase III su 98.1 7.3E-05 1.6E-09 84.8 17.0 192 178-382 12-217 (605)
68 PRK14958 DNA polymerase III su 98.1 5.9E-05 1.3E-09 85.3 16.0 183 178-384 12-219 (509)
69 PRK09111 DNA polymerase III su 98.1 6.6E-05 1.4E-09 86.2 16.3 201 178-386 20-234 (598)
70 PRK03992 proteasome-activating 98.1 2.3E-05 4.9E-10 86.1 11.9 173 180-378 129-336 (389)
71 PRK00149 dnaA chromosomal repl 98.1 0.00019 4.2E-09 80.5 19.5 178 205-404 148-349 (450)
72 PRK14088 dnaA chromosomal repl 98.1 7.5E-05 1.6E-09 83.2 15.5 161 205-386 130-306 (440)
73 PRK14950 DNA polymerase III su 98.1 8.2E-05 1.8E-09 86.0 16.4 198 179-388 13-224 (585)
74 TIGR03345 VI_ClpV1 type VI sec 98.0 7.1E-05 1.5E-09 89.7 16.0 177 179-378 184-389 (852)
75 PRK14969 DNA polymerase III su 98.0 5.9E-05 1.3E-09 85.8 14.0 191 179-382 13-217 (527)
76 TIGR02639 ClpA ATP-dependent C 98.0 6.3E-05 1.4E-09 89.4 14.8 155 179-354 179-358 (731)
77 PRK14955 DNA polymerase III su 98.0 0.00014 3E-09 80.2 16.5 200 178-384 12-227 (397)
78 PRK07764 DNA polymerase III su 98.0 0.00011 2.3E-09 87.4 16.3 190 179-382 12-218 (824)
79 TIGR02903 spore_lon_C ATP-depe 98.0 0.00016 3.4E-09 83.9 17.4 205 178-388 150-398 (615)
80 TIGR02881 spore_V_K stage V sp 98.0 4.5E-05 9.7E-10 79.2 11.6 130 204-354 41-191 (261)
81 PRK14970 DNA polymerase III su 98.0 0.00013 2.8E-09 79.8 15.3 184 178-384 13-208 (367)
82 PRK14952 DNA polymerase III su 98.0 0.0002 4.4E-09 81.8 17.3 194 179-385 10-220 (584)
83 PF08937 DUF1863: MTH538 TIR-l 98.0 1.2E-05 2.7E-10 74.0 5.9 88 6-98 1-106 (130)
84 TIGR00362 DnaA chromosomal rep 97.9 0.00011 2.4E-09 81.3 14.3 160 205-386 136-311 (405)
85 PRK14953 DNA polymerase III su 97.9 0.00071 1.5E-08 76.2 19.7 190 179-386 13-221 (486)
86 COG1373 Predicted ATPase (AAA+ 97.9 0.00092 2E-08 73.6 19.4 223 207-473 39-270 (398)
87 COG2255 RuvB Holliday junction 97.9 0.00041 9E-09 70.3 15.0 255 178-476 22-315 (332)
88 PRK14959 DNA polymerase III su 97.9 0.0003 6.6E-09 80.3 15.9 198 179-389 13-225 (624)
89 PRK14954 DNA polymerase III su 97.9 0.00026 5.7E-09 81.5 15.5 197 179-382 13-225 (620)
90 CHL00095 clpC Clp protease ATP 97.9 0.00011 2.3E-09 88.5 13.0 151 181-352 178-352 (821)
91 PRK07133 DNA polymerase III su 97.8 0.00024 5.2E-09 82.4 14.7 190 178-382 14-216 (725)
92 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00055 1.2E-08 82.7 18.3 154 179-353 170-348 (852)
93 PHA02544 44 clamp loader, smal 97.8 0.00017 3.6E-09 77.1 12.3 150 178-352 17-171 (316)
94 PRK08451 DNA polymerase III su 97.8 0.0013 2.9E-08 74.2 19.7 191 179-385 11-218 (535)
95 PRK05707 DNA polymerase III su 97.8 0.00055 1.2E-08 73.2 15.9 93 287-385 107-203 (328)
96 PRK10865 protein disaggregatio 97.8 0.00052 1.1E-08 82.7 17.4 51 179-231 175-225 (857)
97 PRK06305 DNA polymerase III su 97.8 0.00035 7.6E-09 78.1 14.5 192 179-382 14-219 (451)
98 PRK14086 dnaA chromosomal repl 97.8 0.00036 7.8E-09 79.4 14.6 159 205-385 314-488 (617)
99 PRK12422 chromosomal replicati 97.8 0.00036 7.8E-09 77.7 14.4 153 205-379 141-307 (445)
100 PRK14948 DNA polymerase III su 97.8 0.0011 2.3E-08 76.9 18.7 198 179-387 13-224 (620)
101 PRK06620 hypothetical protein; 97.8 0.00012 2.5E-09 73.6 9.4 137 206-386 45-190 (214)
102 TIGR03689 pup_AAA proteasome A 97.8 0.00014 3E-09 81.6 10.8 157 180-354 180-378 (512)
103 PTZ00454 26S protease regulato 97.7 0.00029 6.3E-09 77.3 12.8 175 179-379 142-351 (398)
104 PRK06647 DNA polymerase III su 97.7 0.0016 3.5E-08 74.6 19.2 195 178-385 12-220 (563)
105 KOG0989 Replication factor C, 97.7 0.00015 3.3E-09 74.1 9.5 184 178-379 32-224 (346)
106 KOG2227 Pre-initiation complex 97.7 0.0011 2.4E-08 71.6 16.3 205 179-389 147-372 (529)
107 PRK05563 DNA polymerase III su 97.7 0.00069 1.5E-08 77.8 16.0 193 178-383 12-218 (559)
108 PF00004 AAA: ATPase family as 97.7 0.00019 4E-09 65.7 9.1 23 208-230 1-23 (132)
109 PTZ00361 26 proteosome regulat 97.7 0.00026 5.6E-09 78.3 11.7 173 181-379 182-389 (438)
110 TIGR02880 cbbX_cfxQ probable R 97.7 0.0007 1.5E-08 71.1 14.1 129 206-354 59-208 (284)
111 PRK07399 DNA polymerase III su 97.7 0.002 4.3E-08 68.6 17.6 194 182-387 4-223 (314)
112 PRK11034 clpA ATP-dependent Cl 97.6 0.00022 4.8E-09 84.0 10.8 153 181-354 185-362 (758)
113 PF05673 DUF815: Protein of un 97.6 0.0019 4.2E-08 65.0 15.7 55 178-232 23-79 (249)
114 PRK14971 DNA polymerase III su 97.6 0.0028 6E-08 73.5 19.0 182 179-384 14-221 (614)
115 PRK08116 hypothetical protein; 97.6 0.00032 7E-09 72.9 9.8 102 206-324 115-221 (268)
116 PRK14965 DNA polymerase III su 97.6 0.0014 3E-08 75.6 15.8 195 178-385 12-221 (576)
117 PRK09376 rho transcription ter 97.6 0.00015 3.3E-09 77.8 7.0 91 204-297 168-267 (416)
118 CHL00176 ftsH cell division pr 97.5 0.00071 1.5E-08 78.4 12.5 173 180-377 181-386 (638)
119 TIGR01241 FtsH_fam ATP-depende 97.5 0.00059 1.3E-08 77.6 11.6 173 181-378 54-259 (495)
120 PF05621 TniB: Bacterial TniB 97.5 0.0015 3.3E-08 67.7 13.5 200 182-385 34-261 (302)
121 CHL00181 cbbX CbbX; Provisiona 97.5 0.0027 5.9E-08 66.7 15.6 130 205-354 59-209 (287)
122 cd01128 rho_factor Transcripti 97.5 0.00021 4.5E-09 73.3 6.8 91 204-297 15-114 (249)
123 PF10443 RNA12: RNA12 protein; 97.4 0.011 2.4E-07 64.1 19.1 101 287-391 149-284 (431)
124 COG1222 RPT1 ATP-dependent 26S 97.4 0.0027 5.9E-08 66.5 13.5 172 182-379 151-357 (406)
125 TIGR00767 rho transcription te 97.4 0.00046 1E-08 74.4 8.1 91 204-297 167-266 (415)
126 KOG2543 Origin recognition com 97.4 0.0059 1.3E-07 64.6 15.8 166 181-354 5-193 (438)
127 COG0593 DnaA ATPase involved i 97.4 0.0031 6.8E-08 68.5 14.3 132 204-354 112-257 (408)
128 COG3267 ExeA Type II secretory 97.4 0.0062 1.3E-07 61.3 15.2 179 203-388 49-248 (269)
129 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0014 3E-08 73.7 11.8 176 181-379 227-429 (489)
130 PRK08769 DNA polymerase III su 97.3 0.0057 1.2E-07 65.0 15.8 93 286-386 113-209 (319)
131 PRK12377 putative replication 97.3 0.0039 8.4E-08 63.9 14.1 36 205-240 101-136 (248)
132 smart00382 AAA ATPases associa 97.3 0.00083 1.8E-08 61.3 7.9 35 206-240 3-37 (148)
133 PF08357 SEFIR: SEFIR domain; 97.3 0.00028 6.1E-09 66.6 4.7 64 7-70 2-70 (150)
134 PRK08181 transposase; Validate 97.3 0.0011 2.4E-08 68.8 9.3 35 206-240 107-141 (269)
135 TIGR01243 CDC48 AAA family ATP 97.3 0.0024 5.1E-08 76.3 13.2 172 182-379 453-657 (733)
136 PRK10536 hypothetical protein; 97.2 0.0012 2.6E-08 67.2 8.5 137 181-324 54-213 (262)
137 TIGR01243 CDC48 AAA family ATP 97.2 0.002 4.3E-08 76.9 11.7 174 181-379 177-381 (733)
138 PRK06090 DNA polymerase III su 97.2 0.018 3.9E-07 61.2 17.1 90 286-385 108-201 (319)
139 KOG0741 AAA+-type ATPase [Post 97.1 0.0086 1.9E-07 65.6 14.5 130 203-353 536-685 (744)
140 TIGR00602 rad24 checkpoint pro 97.1 0.0013 2.8E-08 75.9 8.9 53 178-230 80-135 (637)
141 TIGR02639 ClpA ATP-dependent C 97.1 0.0042 9.2E-08 74.0 13.4 49 181-229 453-508 (731)
142 PRK06964 DNA polymerase III su 97.1 0.011 2.4E-07 63.4 15.1 91 286-386 132-226 (342)
143 PRK09183 transposase/IS protei 97.1 0.0015 3.2E-08 67.6 8.2 28 205-232 102-129 (259)
144 PRK06871 DNA polymerase III su 97.1 0.017 3.6E-07 61.6 16.2 173 192-382 12-200 (325)
145 PRK07993 DNA polymerase III su 97.1 0.013 2.8E-07 62.9 15.5 174 192-383 12-202 (334)
146 COG0542 clpA ATP-binding subun 97.1 0.011 2.4E-07 68.9 15.7 153 180-353 168-345 (786)
147 PRK11331 5-methylcytosine-spec 97.1 0.0013 2.7E-08 72.2 7.4 55 182-240 175-231 (459)
148 PRK06526 transposase; Provisio 97.1 0.0011 2.3E-08 68.3 6.6 28 205-232 98-125 (254)
149 PRK07952 DNA replication prote 97.0 0.0028 6E-08 64.8 9.2 36 205-240 99-134 (244)
150 PF01695 IstB_IS21: IstB-like 97.0 0.00055 1.2E-08 66.6 3.6 36 205-240 47-82 (178)
151 COG2812 DnaX DNA polymerase II 97.0 0.018 4E-07 64.5 15.8 188 179-379 13-214 (515)
152 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0053 1.1E-07 68.3 10.8 93 181-296 189-292 (802)
153 PRK08058 DNA polymerase III su 96.9 0.016 3.6E-07 62.2 14.6 156 184-353 7-181 (329)
154 COG0466 Lon ATP-dependent Lon 96.9 0.0034 7.4E-08 71.3 9.5 160 182-355 323-509 (782)
155 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0046 1E-07 74.8 10.9 51 181-231 564-621 (852)
156 cd01131 PilT Pilus retraction 96.8 0.0032 7E-08 62.4 7.7 111 206-327 2-112 (198)
157 COG2607 Predicted ATPase (AAA+ 96.8 0.013 2.7E-07 58.4 11.3 57 179-235 57-115 (287)
158 PF07728 AAA_5: AAA domain (dy 96.8 0.0011 2.4E-08 61.5 4.0 22 208-229 2-23 (139)
159 PRK06921 hypothetical protein; 96.8 0.0017 3.6E-08 67.5 5.6 36 205-240 117-153 (266)
160 KOG0744 AAA+-type ATPase [Post 96.8 0.0045 9.7E-08 63.9 8.5 36 205-240 177-216 (423)
161 PF13177 DNA_pol3_delta2: DNA 96.8 0.015 3.2E-07 55.7 11.7 137 187-342 2-162 (162)
162 COG1484 DnaC DNA replication p 96.8 0.0039 8.4E-08 64.3 8.1 74 204-296 104-177 (254)
163 PRK08939 primosomal protein Dn 96.8 0.0052 1.1E-07 65.1 9.1 99 205-323 156-260 (306)
164 KOG0735 AAA+-type ATPase [Post 96.8 0.012 2.6E-07 66.6 12.2 161 205-385 431-616 (952)
165 TIGR02640 gas_vesic_GvpN gas v 96.8 0.023 5.1E-07 58.9 13.7 24 206-229 22-45 (262)
166 CHL00095 clpC Clp protease ATP 96.8 0.0076 1.7E-07 72.7 11.5 133 181-323 508-661 (821)
167 COG0542 clpA ATP-binding subun 96.7 0.0056 1.2E-07 71.3 9.6 118 182-310 491-619 (786)
168 PRK06835 DNA replication prote 96.7 0.0037 8E-08 66.8 7.5 35 206-240 184-218 (329)
169 PRK10865 protein disaggregatio 96.7 0.0072 1.6E-07 73.0 10.9 51 181-231 567-624 (857)
170 COG0470 HolB ATPase involved i 96.7 0.014 3E-07 62.4 11.6 146 184-346 3-173 (325)
171 PF02562 PhoH: PhoH-like prote 96.7 0.0059 1.3E-07 60.4 7.8 127 187-324 5-156 (205)
172 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0091 2E-07 72.0 10.8 50 182-231 566-622 (852)
173 PRK04132 replication factor C 96.6 0.11 2.4E-06 62.0 19.3 155 211-386 570-732 (846)
174 PRK09361 radB DNA repair and r 96.6 0.0065 1.4E-07 61.5 8.1 48 193-240 11-58 (225)
175 PRK08699 DNA polymerase III su 96.6 0.021 4.6E-07 61.0 12.1 85 287-381 114-202 (325)
176 PF13207 AAA_17: AAA domain; P 96.6 0.0018 3.9E-08 58.4 3.4 23 207-229 1-23 (121)
177 KOG2004 Mitochondrial ATP-depe 96.6 0.0062 1.3E-07 69.0 8.0 52 182-233 411-466 (906)
178 KOG2228 Origin recognition com 96.6 0.024 5.1E-07 59.2 11.6 174 180-354 22-219 (408)
179 PRK12608 transcription termina 96.6 0.0098 2.1E-07 63.9 9.3 100 193-296 122-230 (380)
180 PRK08118 topology modulation p 96.6 0.0045 9.8E-08 59.6 6.2 32 207-238 3-37 (167)
181 PRK04296 thymidine kinase; Pro 96.5 0.0038 8.2E-08 61.5 5.4 109 206-324 3-116 (190)
182 PRK10787 DNA-binding ATP-depen 96.5 0.048 1E-06 65.1 15.6 159 182-354 322-506 (784)
183 PRK11034 clpA ATP-dependent Cl 96.5 0.0088 1.9E-07 70.8 9.3 49 182-230 458-513 (758)
184 PRK00771 signal recognition pa 96.5 0.046 1E-06 60.7 14.3 29 204-232 94-122 (437)
185 PRK14974 cell division protein 96.5 0.06 1.3E-06 57.7 14.5 29 204-232 139-167 (336)
186 TIGR02237 recomb_radB DNA repa 96.4 0.0078 1.7E-07 60.1 7.3 44 197-240 4-47 (209)
187 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0026 5.6E-08 68.0 3.9 51 181-231 50-104 (361)
188 cd01133 F1-ATPase_beta F1 ATP 96.4 0.0057 1.2E-07 63.2 6.2 91 204-297 68-174 (274)
189 TIGR00763 lon ATP-dependent pr 96.4 0.025 5.3E-07 68.0 12.5 51 182-232 320-374 (775)
190 PRK06067 flagellar accessory p 96.4 0.01 2.2E-07 60.5 8.1 48 193-240 13-60 (234)
191 cd01120 RecA-like_NTPases RecA 96.4 0.0046 1E-07 58.4 5.2 34 207-240 1-34 (165)
192 PRK11889 flhF flagellar biosyn 96.4 0.075 1.6E-06 57.5 14.4 37 204-240 240-276 (436)
193 PRK10733 hflB ATP-dependent me 96.3 0.02 4.3E-07 67.2 10.8 128 206-355 186-336 (644)
194 KOG0730 AAA+-type ATPase [Post 96.3 0.012 2.6E-07 66.3 8.5 151 203-379 466-637 (693)
195 COG1618 Predicted nucleotide k 96.3 0.0041 8.9E-08 58.1 4.0 35 205-239 5-40 (179)
196 cd01394 radB RadB. The archaea 96.3 0.019 4E-07 57.8 9.2 49 192-240 6-54 (218)
197 PRK06696 uridine kinase; Valid 96.3 0.0063 1.4E-07 61.6 5.8 46 187-232 3-49 (223)
198 PRK07261 topology modulation p 96.3 0.016 3.5E-07 56.0 8.3 23 207-229 2-24 (171)
199 cd01393 recA_like RecA is a b 96.3 0.018 3.9E-07 58.2 9.1 48 193-240 7-60 (226)
200 PRK07667 uridine kinase; Provi 96.3 0.0084 1.8E-07 59.2 6.3 42 191-232 3-44 (193)
201 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.014 3.1E-07 55.4 7.4 116 206-324 3-138 (159)
202 PF00448 SRP54: SRP54-type pro 96.3 0.0091 2E-07 59.0 6.5 87 205-295 1-92 (196)
203 PHA00729 NTP-binding motif con 96.2 0.02 4.3E-07 57.5 8.7 27 204-230 16-42 (226)
204 PF04665 Pox_A32: Poxvirus A32 96.2 0.0027 5.8E-08 64.3 2.4 36 205-240 13-48 (241)
205 PLN00020 ribulose bisphosphate 96.2 0.0093 2E-07 63.6 6.4 29 204-232 147-175 (413)
206 KOG1514 Origin recognition com 96.2 0.11 2.3E-06 59.4 14.8 166 180-354 394-589 (767)
207 cd00544 CobU Adenosylcobinamid 96.2 0.0042 9.2E-08 59.8 3.5 79 208-295 2-82 (169)
208 PRK11608 pspF phage shock prot 96.1 0.013 2.9E-07 62.8 7.6 47 182-228 6-52 (326)
209 TIGR02902 spore_lonB ATP-depen 96.1 0.024 5.3E-07 64.9 10.0 47 181-229 64-110 (531)
210 TIGR00064 ftsY signal recognit 96.1 0.026 5.6E-07 58.8 9.3 36 204-239 71-106 (272)
211 TIGR01420 pilT_fam pilus retra 96.1 0.012 2.6E-07 63.6 7.0 109 205-324 122-230 (343)
212 TIGR01817 nifA Nif-specific re 96.0 0.046 1E-06 62.9 11.9 51 179-229 193-243 (534)
213 COG1066 Sms Predicted ATP-depe 96.0 0.02 4.4E-07 61.4 8.1 96 191-295 79-177 (456)
214 PF14532 Sigma54_activ_2: Sigm 96.0 0.0043 9.4E-08 57.6 2.8 44 185-228 1-44 (138)
215 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.024 5.1E-07 53.2 7.7 112 204-338 25-140 (144)
216 cd03214 ABC_Iron-Siderophores_ 96.0 0.028 6E-07 54.8 8.5 121 204-328 24-162 (180)
217 KOG0991 Replication factor C, 96.0 0.024 5.2E-07 56.1 7.7 51 178-230 23-73 (333)
218 cd01121 Sms Sms (bacterial rad 96.0 0.022 4.7E-07 62.1 8.2 49 192-240 69-117 (372)
219 TIGR00959 ffh signal recogniti 95.8 0.22 4.8E-06 55.2 15.4 27 204-230 98-124 (428)
220 PRK05022 anaerobic nitric oxid 95.8 0.17 3.6E-06 57.9 15.0 50 180-229 185-234 (509)
221 PF01583 APS_kinase: Adenylyls 95.8 0.014 3E-07 55.2 5.1 36 205-240 2-37 (156)
222 cd01123 Rad51_DMC1_radA Rad51_ 95.8 0.022 4.7E-07 58.0 7.0 47 194-240 8-60 (235)
223 PRK05541 adenylylsulfate kinas 95.8 0.012 2.6E-07 57.1 4.8 37 204-240 6-42 (176)
224 KOG0733 Nuclear AAA ATPase (VC 95.8 0.033 7.1E-07 62.3 8.5 127 205-354 545-692 (802)
225 PF13238 AAA_18: AAA domain; P 95.7 0.0079 1.7E-07 54.5 3.2 22 208-229 1-22 (129)
226 cd03223 ABCD_peroxisomal_ALDP 95.7 0.033 7.2E-07 53.5 7.6 127 204-338 26-160 (166)
227 cd03247 ABCC_cytochrome_bd The 95.7 0.048 1E-06 52.9 8.9 125 204-339 27-170 (178)
228 KOG0743 AAA+-type ATPase [Post 95.7 0.12 2.7E-06 56.2 12.5 150 205-389 235-413 (457)
229 cd01129 PulE-GspE PulE/GspE Th 95.7 0.034 7.5E-07 57.7 8.0 102 191-307 69-170 (264)
230 PRK10867 signal recognition pa 95.7 0.25 5.5E-06 54.7 15.2 29 204-232 99-127 (433)
231 PRK14722 flhF flagellar biosyn 95.6 0.11 2.4E-06 56.3 12.0 87 204-296 136-225 (374)
232 COG0464 SpoVK ATPases of the A 95.6 0.038 8.1E-07 63.0 8.9 151 204-377 275-445 (494)
233 COG2884 FtsE Predicted ATPase 95.6 0.058 1.3E-06 52.0 8.5 55 275-331 144-204 (223)
234 KOG0731 AAA+-type ATPase conta 95.6 0.12 2.5E-06 60.3 12.4 180 179-382 308-521 (774)
235 PRK15455 PrkA family serine pr 95.5 0.014 3E-07 65.8 4.7 51 182-232 76-130 (644)
236 TIGR01425 SRP54_euk signal rec 95.5 0.3 6.6E-06 53.9 14.9 29 204-232 99-127 (429)
237 PRK15429 formate hydrogenlyase 95.5 0.049 1.1E-06 64.6 9.4 49 181-229 375-423 (686)
238 TIGR02012 tigrfam_recA protein 95.5 0.031 6.8E-07 59.3 6.9 48 193-240 42-90 (321)
239 cd00983 recA RecA is a bacter 95.5 0.035 7.5E-07 59.0 7.2 48 193-240 42-90 (325)
240 PF00485 PRK: Phosphoribulokin 95.5 0.012 2.6E-07 58.1 3.6 26 207-232 1-26 (194)
241 COG1223 Predicted ATPase (AAA+ 95.4 0.06 1.3E-06 54.2 8.2 170 182-378 121-318 (368)
242 TIGR02655 circ_KaiC circadian 95.4 0.032 7E-07 63.2 7.2 51 190-240 248-298 (484)
243 PF03308 ArgK: ArgK protein; 95.4 0.04 8.8E-07 56.0 7.0 43 190-232 14-56 (266)
244 PF13604 AAA_30: AAA domain; P 95.4 0.089 1.9E-06 52.0 9.4 113 191-324 7-131 (196)
245 cd03238 ABC_UvrA The excision 95.3 0.082 1.8E-06 51.3 8.8 127 204-339 20-162 (176)
246 cd03222 ABC_RNaseL_inhibitor T 95.3 0.049 1.1E-06 52.9 7.2 115 204-339 24-146 (177)
247 PF10137 TIR-like: Predicted n 95.3 0.036 7.8E-07 50.3 5.8 60 7-69 1-61 (125)
248 cd03228 ABCC_MRP_Like The MRP 95.3 0.047 1E-06 52.6 7.0 128 204-338 27-167 (171)
249 KOG0739 AAA+-type ATPase [Post 95.2 0.27 5.9E-06 50.6 12.2 172 182-379 133-335 (439)
250 COG4088 Predicted nucleotide k 95.2 0.055 1.2E-06 52.7 7.0 28 206-233 2-29 (261)
251 PRK08233 hypothetical protein; 95.2 0.015 3.4E-07 56.3 3.4 26 205-230 3-28 (182)
252 cd03216 ABC_Carb_Monos_I This 95.2 0.03 6.6E-07 53.6 5.4 117 204-328 25-146 (163)
253 TIGR00708 cobA cob(I)alamin ad 95.2 0.17 3.7E-06 48.7 10.4 117 206-324 6-140 (173)
254 cd01125 repA Hexameric Replica 95.2 0.14 3E-06 52.3 10.6 24 207-230 3-26 (239)
255 TIGR02974 phageshock_pspF psp 95.2 0.06 1.3E-06 57.8 8.2 45 184-228 1-45 (329)
256 PRK09354 recA recombinase A; P 95.2 0.045 9.7E-07 58.7 7.1 48 193-240 47-95 (349)
257 PRK05480 uridine/cytidine kina 95.2 0.018 3.9E-07 57.6 3.9 27 203-229 4-30 (209)
258 PRK11823 DNA repair protein Ra 95.2 0.059 1.3E-06 60.3 8.3 50 191-240 66-115 (446)
259 PF08433 KTI12: Chromatin asso 95.2 0.036 7.9E-07 57.6 6.2 27 206-232 2-28 (270)
260 PRK06762 hypothetical protein; 95.2 0.017 3.7E-07 55.3 3.5 25 205-229 2-26 (166)
261 PRK12727 flagellar biosynthesi 95.2 0.19 4.1E-06 56.5 12.0 29 204-232 349-377 (559)
262 TIGR00416 sms DNA repair prote 95.1 0.055 1.2E-06 60.6 7.9 50 191-240 80-129 (454)
263 cd03230 ABC_DR_subfamily_A Thi 95.1 0.078 1.7E-06 51.2 8.0 125 204-338 25-168 (173)
264 cd03115 SRP The signal recogni 95.1 0.12 2.6E-06 49.8 9.3 26 207-232 2-27 (173)
265 cd02027 APSK Adenosine 5'-phos 95.1 0.082 1.8E-06 49.8 7.9 25 207-231 1-25 (149)
266 PF13671 AAA_33: AAA domain; P 95.1 0.018 3.9E-07 53.5 3.3 24 207-230 1-24 (143)
267 PTZ00301 uridine kinase; Provi 95.1 0.019 4.2E-07 57.3 3.7 29 205-233 3-31 (210)
268 PF00910 RNA_helicase: RNA hel 95.1 0.014 3.1E-07 51.6 2.5 26 208-233 1-26 (107)
269 PF00437 T2SE: Type II/IV secr 95.0 0.017 3.7E-07 60.2 3.3 128 182-324 104-232 (270)
270 cd03246 ABCC_Protease_Secretio 95.0 0.087 1.9E-06 50.9 8.0 128 204-338 27-168 (173)
271 KOG0734 AAA+-type ATPase conta 95.0 0.049 1.1E-06 60.0 6.6 48 182-229 304-361 (752)
272 COG0468 RecA RecA/RadA recombi 95.0 0.052 1.1E-06 56.4 6.5 46 195-240 50-95 (279)
273 KOG2035 Replication factor C, 95.0 0.11 2.4E-06 52.9 8.5 208 182-404 13-258 (351)
274 PRK09270 nucleoside triphospha 95.0 0.032 6.9E-07 56.7 4.9 31 202-232 30-60 (229)
275 KOG0728 26S proteasome regulat 94.9 0.48 1E-05 47.6 12.7 125 204-354 180-331 (404)
276 cd02019 NK Nucleoside/nucleoti 94.9 0.02 4.3E-07 46.3 2.7 23 207-229 1-23 (69)
277 PRK13531 regulatory ATPase Rav 94.9 0.034 7.3E-07 61.8 5.3 46 182-231 20-65 (498)
278 KOG1970 Checkpoint RAD17-RFC c 94.9 0.32 6.9E-06 54.2 12.6 42 188-229 88-134 (634)
279 TIGR00235 udk uridine kinase. 94.9 0.026 5.5E-07 56.4 4.0 28 203-230 4-31 (207)
280 KOG1969 DNA replication checkp 94.9 0.07 1.5E-06 61.0 7.6 26 203-228 324-349 (877)
281 PRK03839 putative kinase; Prov 94.9 0.021 4.6E-07 55.5 3.2 24 207-230 2-25 (180)
282 PRK11388 DNA-binding transcrip 94.8 0.53 1.2E-05 55.5 15.3 49 181-229 324-372 (638)
283 PRK00131 aroK shikimate kinase 94.8 0.024 5.2E-07 54.5 3.4 25 205-229 4-28 (175)
284 PRK12723 flagellar biosynthesi 94.8 0.14 3E-06 56.0 9.6 27 204-230 173-199 (388)
285 PF07726 AAA_3: ATPase family 94.8 0.019 4.1E-07 52.1 2.3 28 208-235 2-29 (131)
286 TIGR03499 FlhF flagellar biosy 94.8 0.11 2.5E-06 54.4 8.6 29 204-232 193-221 (282)
287 TIGR00150 HI0065_YjeE ATPase, 94.7 0.036 7.9E-07 50.9 4.2 40 190-229 7-46 (133)
288 CHL00206 ycf2 Ycf2; Provisiona 94.7 0.18 3.8E-06 64.0 11.2 26 204-229 1629-1654(2281)
289 PRK04040 adenylate kinase; Pro 94.7 0.029 6.2E-07 55.2 3.8 25 206-230 3-27 (188)
290 PRK12726 flagellar biosynthesi 94.7 0.19 4.1E-06 54.3 10.1 37 204-240 205-241 (407)
291 TIGR02238 recomb_DMC1 meiotic 94.7 0.15 3.3E-06 54.2 9.4 37 192-228 83-119 (313)
292 COG1875 NYN ribonuclease and A 94.7 0.2 4.3E-06 53.1 9.7 135 183-324 225-388 (436)
293 TIGR03878 thermo_KaiC_2 KaiC d 94.6 0.054 1.2E-06 56.1 5.7 38 203-240 34-71 (259)
294 KOG1051 Chaperone HSP104 and r 94.6 0.22 4.7E-06 59.3 11.1 103 182-297 562-671 (898)
295 TIGR02858 spore_III_AA stage I 94.6 0.069 1.5E-06 55.5 6.3 117 204-327 110-232 (270)
296 PRK00889 adenylylsulfate kinas 94.6 0.047 1E-06 52.8 4.9 28 204-231 3-30 (175)
297 cd03233 ABC_PDR_domain1 The pl 94.6 0.2 4.4E-06 49.7 9.5 27 204-230 32-58 (202)
298 COG0572 Udk Uridine kinase [Nu 94.6 0.038 8.2E-07 54.9 4.1 30 203-232 6-35 (218)
299 cd01122 GP4d_helicase GP4d_hel 94.5 0.23 5E-06 51.6 10.3 37 204-240 29-66 (271)
300 TIGR01360 aden_kin_iso1 adenyl 94.5 0.031 6.7E-07 54.6 3.4 26 204-229 2-27 (188)
301 PTZ00494 tuzin-like protein; P 94.5 2.4 5.1E-05 46.6 17.5 165 177-354 366-544 (664)
302 COG1136 SalX ABC-type antimicr 94.5 0.2 4.4E-06 50.3 9.1 62 275-339 149-216 (226)
303 PRK06547 hypothetical protein; 94.5 0.036 7.8E-07 53.6 3.7 27 203-229 13-39 (172)
304 cd01130 VirB11-like_ATPase Typ 94.5 0.04 8.6E-07 54.0 4.1 93 204-305 24-119 (186)
305 TIGR02236 recomb_radA DNA repa 94.4 0.12 2.5E-06 55.1 8.0 48 193-240 83-136 (310)
306 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.07 1.5E-06 54.5 6.0 48 193-240 9-56 (237)
307 PRK00625 shikimate kinase; Pro 94.4 0.03 6.4E-07 54.2 3.1 24 207-230 2-25 (173)
308 PF08423 Rad51: Rad51; InterP 94.4 0.049 1.1E-06 56.3 4.8 37 193-229 26-62 (256)
309 cd03281 ABC_MSH5_euk MutS5 hom 94.4 0.062 1.3E-06 53.9 5.4 23 205-227 29-51 (213)
310 PRK10463 hydrogenase nickel in 94.4 0.1 2.2E-06 54.4 7.0 35 203-237 102-136 (290)
311 COG4608 AppF ABC-type oligopep 94.4 0.13 2.8E-06 52.6 7.6 125 204-331 38-177 (268)
312 COG0467 RAD55 RecA-superfamily 94.4 0.065 1.4E-06 55.5 5.7 45 196-240 14-58 (260)
313 cd02028 UMPK_like Uridine mono 94.4 0.046 1E-06 53.2 4.2 26 207-232 1-26 (179)
314 PRK11174 cysteine/glutathione 94.4 0.098 2.1E-06 61.0 7.7 26 204-229 375-400 (588)
315 PF03266 NTPase_1: NTPase; In 94.3 0.05 1.1E-06 52.4 4.3 24 208-231 2-25 (168)
316 COG1121 ZnuC ABC-type Mn/Zn tr 94.3 0.095 2.1E-06 53.4 6.4 53 275-329 146-204 (254)
317 PRK07132 DNA polymerase III su 94.3 4 8.6E-05 43.2 18.8 153 205-384 18-184 (299)
318 cd03237 ABC_RNaseL_inhibitor_d 94.3 0.21 4.5E-06 51.4 9.1 26 204-229 24-49 (246)
319 cd00227 CPT Chloramphenicol (C 94.3 0.036 7.9E-07 53.7 3.3 24 206-229 3-26 (175)
320 PF10236 DAP3: Mitochondrial r 94.3 0.27 5.8E-06 52.3 10.1 48 335-382 258-306 (309)
321 cd03232 ABC_PDR_domain2 The pl 94.3 0.16 3.4E-06 50.0 7.8 25 204-228 32-56 (192)
322 cd00267 ABC_ATPase ABC (ATP-bi 94.2 0.057 1.2E-06 51.2 4.5 124 205-338 25-153 (157)
323 COG1703 ArgK Putative periplas 94.2 0.076 1.6E-06 54.8 5.5 42 192-233 38-79 (323)
324 PLN03187 meiotic recombination 94.2 0.22 4.7E-06 53.6 9.2 48 193-240 114-167 (344)
325 PF03969 AFG1_ATPase: AFG1-lik 94.2 0.084 1.8E-06 57.3 6.1 102 204-324 61-167 (362)
326 PRK13947 shikimate kinase; Pro 94.2 0.036 7.8E-07 53.3 3.0 24 207-230 3-26 (171)
327 TIGR01359 UMP_CMP_kin_fam UMP- 94.2 0.032 6.9E-07 54.3 2.7 23 207-229 1-23 (183)
328 PF00158 Sigma54_activat: Sigm 94.2 0.05 1.1E-06 52.4 3.9 45 184-228 1-45 (168)
329 PRK03846 adenylylsulfate kinas 94.2 0.067 1.5E-06 53.0 5.0 38 203-240 22-59 (198)
330 COG1102 Cmk Cytidylate kinase 94.1 0.038 8.3E-07 51.8 2.9 24 207-230 2-25 (179)
331 COG2401 ABC-type ATPase fused 94.1 0.11 2.4E-06 55.7 6.7 131 205-335 409-579 (593)
332 KOG0736 Peroxisome assembly fa 94.1 1.4 3.1E-05 51.1 15.6 93 183-297 673-775 (953)
333 cd03240 ABC_Rad50 The catalyti 94.1 0.24 5.2E-06 49.3 8.8 59 279-339 132-196 (204)
334 TIGR03600 phage_DnaB phage rep 94.1 0.83 1.8E-05 50.9 14.0 72 184-263 174-246 (421)
335 PRK05439 pantothenate kinase; 94.1 0.094 2E-06 55.5 6.0 30 202-231 83-112 (311)
336 KOG0735 AAA+-type ATPase [Post 94.0 0.66 1.4E-05 53.2 12.7 151 205-381 701-872 (952)
337 TIGR01069 mutS2 MutS2 family p 94.0 0.089 1.9E-06 62.8 6.5 110 285-404 401-520 (771)
338 COG0529 CysC Adenylylsulfate k 94.0 0.078 1.7E-06 50.5 4.7 36 204-239 22-57 (197)
339 PRK12724 flagellar biosynthesi 94.0 0.27 5.8E-06 53.9 9.5 25 205-229 223-247 (432)
340 TIGR02524 dot_icm_DotB Dot/Icm 94.0 0.074 1.6E-06 57.7 5.2 95 205-305 134-231 (358)
341 PTZ00088 adenylate kinase 1; P 94.0 0.07 1.5E-06 54.1 4.8 23 207-229 8-30 (229)
342 COG0396 sufC Cysteine desulfur 94.0 0.63 1.4E-05 46.5 11.1 62 275-336 151-216 (251)
343 PRK05986 cob(I)alamin adenolsy 94.0 0.14 3E-06 50.1 6.5 118 205-324 22-158 (191)
344 KOG0729 26S proteasome regulat 94.0 0.2 4.4E-06 50.6 7.7 53 183-240 178-241 (435)
345 COG5635 Predicted NTPase (NACH 94.0 0.28 6.1E-06 59.4 10.7 225 205-437 222-482 (824)
346 PRK13543 cytochrome c biogenes 93.9 0.3 6.6E-06 48.9 9.3 25 204-228 36-60 (214)
347 TIGR03881 KaiC_arch_4 KaiC dom 93.9 0.1 2.2E-06 52.8 6.0 48 193-240 8-55 (229)
348 cd03213 ABCG_EPDR ABCG transpo 93.9 0.2 4.3E-06 49.4 7.8 26 204-229 34-59 (194)
349 PF06745 KaiC: KaiC; InterPro 93.9 0.062 1.3E-06 54.3 4.3 48 193-240 7-55 (226)
350 COG2274 SunT ABC-type bacterio 93.9 0.3 6.6E-06 57.6 10.4 24 204-227 498-521 (709)
351 PF00625 Guanylate_kin: Guanyl 93.9 0.065 1.4E-06 52.3 4.2 35 205-239 2-36 (183)
352 cd03215 ABC_Carb_Monos_II This 93.8 0.2 4.3E-06 48.8 7.6 26 204-229 25-50 (182)
353 TIGR02322 phosphon_PhnN phosph 93.8 0.048 1E-06 52.9 3.2 25 206-230 2-26 (179)
354 COG1428 Deoxynucleoside kinase 93.8 0.047 1E-06 53.6 3.1 26 205-230 4-29 (216)
355 PRK10416 signal recognition pa 93.8 0.14 3E-06 54.7 6.8 29 204-232 113-141 (318)
356 TIGR02525 plasmid_TraJ plasmid 93.8 0.097 2.1E-06 56.9 5.7 94 206-306 150-245 (372)
357 PRK06217 hypothetical protein; 93.8 0.045 9.8E-07 53.5 2.9 23 207-229 3-25 (183)
358 PRK14738 gmk guanylate kinase; 93.8 0.053 1.2E-06 54.1 3.5 29 200-228 8-36 (206)
359 cd02021 GntK Gluconate kinase 93.8 0.042 9.1E-07 51.6 2.6 23 207-229 1-23 (150)
360 cd03285 ABC_MSH2_euk MutS2 hom 93.8 0.078 1.7E-06 53.6 4.7 24 204-227 29-52 (222)
361 cd01124 KaiC KaiC is a circadi 93.8 0.07 1.5E-06 52.0 4.2 33 208-240 2-34 (187)
362 cd02023 UMPK Uridine monophosp 93.8 0.041 8.9E-07 54.4 2.6 23 207-229 1-23 (198)
363 TIGR02788 VirB11 P-type DNA tr 93.7 0.1 2.2E-06 55.5 5.8 110 204-324 143-253 (308)
364 cd02020 CMPK Cytidine monophos 93.7 0.046 1E-06 50.8 2.8 23 207-229 1-23 (147)
365 PRK15115 response regulator Gl 93.7 1.2 2.6E-05 49.9 14.6 47 182-228 134-180 (444)
366 PRK05973 replicative DNA helic 93.7 0.1 2.3E-06 53.0 5.4 37 204-240 63-99 (237)
367 PF00406 ADK: Adenylate kinase 93.7 0.053 1.1E-06 51.1 3.1 88 210-306 1-94 (151)
368 cd02024 NRK1 Nicotinamide ribo 93.7 0.045 9.7E-07 53.6 2.6 23 207-229 1-23 (187)
369 PRK09435 membrane ATPase/prote 93.7 0.14 3E-06 54.7 6.6 40 193-232 44-83 (332)
370 cd03217 ABC_FeS_Assembly ABC-t 93.7 0.22 4.8E-06 49.3 7.6 25 204-228 25-49 (200)
371 COG3854 SpoIIIAA ncharacterize 93.7 0.14 3.1E-06 50.8 6.0 108 206-323 138-252 (308)
372 TIGR00455 apsK adenylylsulfate 93.6 0.23 4.9E-06 48.5 7.6 28 204-231 17-44 (184)
373 TIGR00390 hslU ATP-dependent p 93.6 0.095 2.1E-06 57.2 5.2 50 183-232 13-74 (441)
374 cd03287 ABC_MSH3_euk MutS3 hom 93.6 0.068 1.5E-06 53.9 3.9 116 204-329 30-159 (222)
375 PRK10820 DNA-binding transcrip 93.6 0.2 4.2E-06 57.4 8.0 50 179-228 201-250 (520)
376 PF03215 Rad17: Rad17 cell cyc 93.6 0.071 1.5E-06 60.5 4.4 57 182-240 19-78 (519)
377 cd00071 GMPK Guanosine monopho 93.6 0.048 1E-06 50.6 2.5 26 207-232 1-26 (137)
378 cd02025 PanK Pantothenate kina 93.5 0.048 1E-06 55.0 2.7 25 207-231 1-25 (220)
379 smart00534 MUTSac ATPase domai 93.5 0.038 8.2E-07 54.1 1.9 21 207-227 1-21 (185)
380 PRK04328 hypothetical protein; 93.5 0.13 2.7E-06 53.0 5.8 48 193-240 11-58 (249)
381 cd00464 SK Shikimate kinase (S 93.5 0.059 1.3E-06 50.6 3.1 22 208-229 2-23 (154)
382 cd03369 ABCC_NFT1 Domain 2 of 93.4 0.64 1.4E-05 46.2 10.6 25 204-228 33-57 (207)
383 PF12799 LRR_4: Leucine Rich r 93.4 0.029 6.2E-07 41.0 0.6 29 575-605 12-40 (44)
384 PF06068 TIP49: TIP49 C-termin 93.4 0.1 2.2E-06 55.7 4.9 57 180-236 22-81 (398)
385 cd01858 NGP_1 NGP-1. Autoanti 93.4 0.45 9.8E-06 45.0 9.0 24 205-228 102-125 (157)
386 PRK08533 flagellar accessory p 93.4 0.094 2E-06 53.3 4.5 47 194-240 13-59 (230)
387 COG4618 ArpD ABC-type protease 93.4 0.1 2.3E-06 57.4 5.0 23 205-227 362-384 (580)
388 PRK10751 molybdopterin-guanine 93.4 0.089 1.9E-06 50.7 4.0 29 204-232 5-33 (173)
389 PRK05201 hslU ATP-dependent pr 93.4 0.11 2.5E-06 56.7 5.3 50 183-232 16-77 (443)
390 PRK12339 2-phosphoglycerate ki 93.3 0.071 1.5E-06 52.7 3.5 25 205-229 3-27 (197)
391 PF03205 MobB: Molybdopterin g 93.3 0.11 2.3E-06 48.5 4.5 35 206-240 1-36 (140)
392 PRK13948 shikimate kinase; Pro 93.3 0.072 1.6E-06 52.0 3.4 27 204-230 9-35 (182)
393 PRK13949 shikimate kinase; Pro 93.3 0.065 1.4E-06 51.7 3.0 24 207-230 3-26 (169)
394 PRK13765 ATP-dependent proteas 93.3 0.12 2.6E-06 60.1 5.6 77 177-263 26-103 (637)
395 KOG0652 26S proteasome regulat 93.2 0.98 2.1E-05 45.7 11.1 52 182-233 171-233 (424)
396 COG0714 MoxR-like ATPases [Gen 93.2 0.083 1.8E-06 56.8 4.0 48 182-233 24-71 (329)
397 TIGR01650 PD_CobS cobaltochela 93.2 0.12 2.7E-06 54.7 5.2 48 181-232 44-91 (327)
398 COG0563 Adk Adenylate kinase a 93.2 0.068 1.5E-06 52.0 3.0 23 207-229 2-24 (178)
399 TIGR03574 selen_PSTK L-seryl-t 93.2 0.086 1.9E-06 54.2 4.0 26 207-232 1-26 (249)
400 PHA02244 ATPase-like protein 93.2 0.081 1.8E-06 56.9 3.8 50 181-230 95-144 (383)
401 KOG0058 Peptide exporter, ABC 93.2 0.16 3.5E-06 58.4 6.3 52 275-328 611-668 (716)
402 COG3910 Predicted ATPase [Gene 93.2 0.63 1.4E-05 45.0 9.2 24 204-227 36-59 (233)
403 COG1936 Predicted nucleotide k 93.1 0.068 1.5E-06 50.8 2.8 20 207-226 2-21 (180)
404 PF13481 AAA_25: AAA domain; P 93.1 0.47 1E-05 46.4 9.0 27 205-231 32-58 (193)
405 PRK00409 recombination and DNA 93.1 0.1 2.2E-06 62.5 4.9 110 285-404 406-525 (782)
406 PRK05537 bifunctional sulfate 93.1 0.11 2.4E-06 59.9 5.0 51 181-231 368-418 (568)
407 PRK15453 phosphoribulokinase; 93.1 0.13 2.8E-06 53.3 5.0 28 204-231 4-31 (290)
408 TIGR01313 therm_gnt_kin carboh 93.1 0.058 1.3E-06 51.4 2.4 22 208-229 1-22 (163)
409 PRK05703 flhF flagellar biosyn 93.1 0.29 6.2E-06 54.4 8.1 36 205-240 221-258 (424)
410 TIGR02782 TrbB_P P-type conjug 93.1 0.16 3.5E-06 53.7 5.9 88 206-304 133-222 (299)
411 cd03250 ABCC_MRP_domain1 Domai 93.1 0.67 1.4E-05 45.9 10.1 26 204-229 30-55 (204)
412 PF00154 RecA: recA bacterial 93.1 0.33 7.1E-06 51.6 8.1 48 193-240 40-88 (322)
413 PF03193 DUF258: Protein of un 93.0 0.11 2.5E-06 49.3 4.1 35 189-228 24-58 (161)
414 COG3640 CooC CO dehydrogenase 93.0 0.14 3E-06 51.1 4.9 34 207-240 2-35 (255)
415 PRK13975 thymidylate kinase; P 93.0 0.084 1.8E-06 52.0 3.4 26 206-231 3-28 (196)
416 TIGR03156 GTP_HflX GTP-binding 93.0 0.33 7.1E-06 52.6 8.2 179 22-228 19-212 (351)
417 TIGR03263 guanyl_kin guanylate 93.0 0.068 1.5E-06 51.8 2.7 24 206-229 2-25 (180)
418 PRK09280 F0F1 ATP synthase sub 93.0 0.44 9.5E-06 53.0 9.2 91 204-297 143-249 (463)
419 PRK14530 adenylate kinase; Pro 93.0 0.078 1.7E-06 53.2 3.2 23 207-229 5-27 (215)
420 PRK00300 gmk guanylate kinase; 93.0 0.08 1.7E-06 52.6 3.2 26 204-229 4-29 (205)
421 PRK12597 F0F1 ATP synthase sub 92.9 0.32 7E-06 54.2 8.1 90 204-296 142-247 (461)
422 TIGR00764 lon_rel lon-related 92.9 0.12 2.7E-06 60.0 5.1 58 181-242 17-75 (608)
423 PF13245 AAA_19: Part of AAA d 92.9 0.15 3.2E-06 42.1 4.2 24 205-228 10-33 (76)
424 PRK14737 gmk guanylate kinase; 92.9 0.085 1.8E-06 51.7 3.2 26 204-229 3-28 (186)
425 PRK10923 glnG nitrogen regulat 92.9 0.25 5.4E-06 55.9 7.5 47 182-228 138-184 (469)
426 PLN03186 DNA repair protein RA 92.9 0.43 9.4E-06 51.3 8.8 37 192-228 110-146 (342)
427 COG0003 ArsA Predicted ATPase 92.9 0.18 3.8E-06 53.7 5.8 36 205-240 2-37 (322)
428 COG0194 Gmk Guanylate kinase [ 92.9 0.11 2.3E-06 50.2 3.7 25 205-229 4-28 (191)
429 COG1224 TIP49 DNA helicase TIP 92.9 0.17 3.7E-06 53.4 5.4 56 179-234 36-94 (450)
430 PRK13657 cyclic beta-1,2-gluca 92.8 0.26 5.5E-06 57.5 7.7 25 204-228 360-384 (588)
431 COG1419 FlhF Flagellar GTP-bin 92.8 0.43 9.4E-06 51.7 8.6 36 205-240 203-240 (407)
432 cd03243 ABC_MutS_homologs The 92.8 0.08 1.7E-06 52.6 3.0 22 206-227 30-51 (202)
433 PRK13946 shikimate kinase; Pro 92.8 0.083 1.8E-06 51.6 3.1 25 205-229 10-34 (184)
434 TIGR00073 hypB hydrogenase acc 92.8 0.14 3E-06 51.1 4.6 29 203-231 20-48 (207)
435 PRK05917 DNA polymerase III su 92.8 2.6 5.5E-05 44.2 14.1 126 192-341 7-154 (290)
436 PF08298 AAA_PrkA: PrkA AAA do 92.7 0.11 2.5E-06 55.2 4.1 52 181-232 60-115 (358)
437 PF06414 Zeta_toxin: Zeta toxi 92.7 0.13 2.8E-06 50.9 4.4 99 203-308 13-115 (199)
438 TIGR00750 lao LAO/AO transport 92.7 0.21 4.6E-06 52.9 6.2 31 202-232 31-61 (300)
439 PRK12678 transcription termina 92.7 0.21 4.6E-06 56.3 6.3 91 204-297 415-514 (672)
440 PRK14527 adenylate kinase; Pro 92.7 0.1 2.2E-06 51.3 3.4 26 204-229 5-30 (191)
441 TIGR01193 bacteriocin_ABC ABC- 92.7 0.31 6.8E-06 58.2 8.2 25 204-228 499-523 (708)
442 TIGR03880 KaiC_arch_3 KaiC dom 92.6 0.21 4.5E-06 50.4 5.8 47 194-240 5-51 (224)
443 KOG3928 Mitochondrial ribosome 92.6 1.1 2.4E-05 48.3 11.1 54 333-389 403-460 (461)
444 PRK14493 putative bifunctional 92.6 0.14 3E-06 53.4 4.5 34 206-240 2-35 (274)
445 TIGR02533 type_II_gspE general 92.6 0.32 7E-06 55.0 7.8 89 205-305 242-330 (486)
446 KOG3347 Predicted nucleotide k 92.6 0.089 1.9E-06 48.6 2.6 24 205-228 7-30 (176)
447 PRK04301 radA DNA repair and r 92.6 0.31 6.7E-06 52.1 7.2 49 192-240 89-143 (317)
448 PRK14529 adenylate kinase; Pro 92.6 0.37 8.1E-06 48.5 7.4 91 208-305 3-96 (223)
449 KOG0727 26S proteasome regulat 92.6 0.13 2.8E-06 51.5 3.9 51 183-233 156-217 (408)
450 PF13086 AAA_11: AAA domain; P 92.5 0.19 4.2E-06 50.4 5.4 36 190-229 6-41 (236)
451 PF13521 AAA_28: AAA domain; P 92.5 0.093 2E-06 50.1 2.9 21 208-228 2-22 (163)
452 COG0465 HflB ATP-dependent Zn 92.5 0.63 1.4E-05 53.2 9.9 177 180-381 148-357 (596)
453 TIGR01039 atpD ATP synthase, F 92.5 0.43 9.3E-06 52.9 8.4 91 204-297 142-248 (461)
454 TIGR03375 type_I_sec_LssB type 92.5 0.38 8.3E-06 57.3 8.6 25 204-228 490-514 (694)
455 PRK13768 GTPase; Provisional 92.4 0.17 3.6E-06 52.3 4.8 27 206-232 3-29 (253)
456 PRK04182 cytidylate kinase; Pr 92.4 0.1 2.3E-06 50.3 3.2 23 207-229 2-24 (180)
457 TIGR00958 3a01208 Conjugate Tr 92.4 0.45 9.8E-06 56.8 9.2 25 204-228 506-530 (711)
458 PRK05057 aroK shikimate kinase 92.4 0.11 2.3E-06 50.3 3.2 25 205-229 4-28 (172)
459 PF08477 Miro: Miro-like prote 92.4 0.11 2.3E-06 46.4 3.0 21 208-228 2-22 (119)
460 KOG1532 GTPase XAB1, interacts 92.4 0.16 3.4E-06 51.6 4.3 38 204-242 18-55 (366)
461 PLN02200 adenylate kinase fami 92.4 0.12 2.6E-06 52.7 3.6 26 204-229 42-67 (234)
462 TIGR02173 cyt_kin_arch cytidyl 92.4 0.11 2.4E-06 49.8 3.2 23 207-229 2-24 (171)
463 cd01983 Fer4_NifH The Fer4_Nif 92.4 0.16 3.4E-06 43.1 3.9 25 207-231 1-25 (99)
464 PF02374 ArsA_ATPase: Anion-tr 92.4 0.18 4E-06 53.4 5.2 35 206-240 2-36 (305)
465 TIGR02868 CydC thiol reductant 92.3 0.27 5.7E-06 56.6 6.9 25 204-228 360-384 (529)
466 PRK11176 lipid transporter ATP 92.3 0.27 5.9E-06 57.2 7.0 25 204-228 368-392 (582)
467 COG0488 Uup ATPase components 92.3 0.42 9E-06 54.5 8.2 61 276-339 161-224 (530)
468 TIGR00176 mobB molybdopterin-g 92.3 0.15 3.2E-06 48.4 3.9 26 207-232 1-26 (155)
469 COG0703 AroK Shikimate kinase 92.3 0.11 2.4E-06 49.7 3.0 28 206-233 3-30 (172)
470 cd03284 ABC_MutS1 MutS1 homolo 92.2 0.28 6.1E-06 49.3 6.1 22 206-227 31-52 (216)
471 PRK10078 ribose 1,5-bisphospho 92.2 0.1 2.2E-06 51.1 2.8 24 206-229 3-26 (186)
472 PRK05800 cobU adenosylcobinami 92.2 0.42 9.1E-06 46.1 7.0 23 207-229 3-25 (170)
473 cd03289 ABCC_CFTR2 The CFTR su 92.2 0.53 1.2E-05 49.2 8.3 26 204-229 29-54 (275)
474 PF06309 Torsin: Torsin; Inte 92.1 0.2 4.4E-06 45.3 4.3 47 183-229 26-77 (127)
475 TIGR01818 ntrC nitrogen regula 92.1 0.54 1.2E-05 53.0 8.9 48 182-229 134-181 (463)
476 COG0378 HypB Ni2+-binding GTPa 92.1 0.2 4.3E-06 48.7 4.4 38 205-242 13-50 (202)
477 PRK05342 clpX ATP-dependent pr 92.1 0.21 4.5E-06 55.2 5.3 48 183-230 72-133 (412)
478 TIGR01287 nifH nitrogenase iro 92.1 0.16 3.6E-06 52.9 4.3 27 206-232 1-27 (275)
479 PRK09519 recA DNA recombinatio 92.1 0.33 7.1E-06 57.4 7.1 49 192-240 46-95 (790)
480 cd01428 ADK Adenylate kinase ( 92.1 0.11 2.5E-06 50.8 3.0 22 208-229 2-23 (194)
481 smart00072 GuKc Guanylate kina 92.0 0.13 2.7E-06 50.4 3.2 26 205-230 2-27 (184)
482 PRK14532 adenylate kinase; Pro 92.0 0.11 2.5E-06 50.7 2.9 22 208-229 3-24 (188)
483 PF12775 AAA_7: P-loop contain 92.0 0.11 2.5E-06 54.1 3.0 26 205-230 33-58 (272)
484 TIGR00554 panK_bact pantothena 92.0 0.15 3.3E-06 53.5 3.9 28 203-230 60-87 (290)
485 PLN02318 phosphoribulokinase/u 92.0 0.16 3.5E-06 57.7 4.3 32 198-229 58-89 (656)
486 KOG0651 26S proteasome regulat 92.0 0.33 7.3E-06 50.3 6.2 30 204-233 165-194 (388)
487 PF07693 KAP_NTPase: KAP famil 92.0 0.46 9.9E-06 50.7 7.8 45 188-232 2-47 (325)
488 PLN02348 phosphoribulokinase 92.0 0.24 5.2E-06 53.7 5.5 30 202-231 46-75 (395)
489 COG1124 DppF ABC-type dipeptid 92.0 0.14 3E-06 51.5 3.4 24 204-227 32-55 (252)
490 PRK03731 aroL shikimate kinase 92.0 0.13 2.7E-06 49.5 3.1 23 207-229 4-26 (171)
491 TIGR00665 DnaB replicative DNA 92.0 1.4 2.9E-05 49.4 11.8 71 185-263 176-247 (434)
492 cd01672 TMPK Thymidine monopho 91.9 0.2 4.4E-06 49.0 4.6 25 207-231 2-26 (200)
493 PRK06761 hypothetical protein; 91.9 0.18 3.8E-06 52.6 4.3 27 206-232 4-30 (282)
494 COG2019 AdkA Archaeal adenylat 91.9 0.17 3.7E-06 47.8 3.6 25 205-229 4-28 (189)
495 cd00820 PEPCK_HprK Phosphoenol 91.8 0.15 3.3E-06 44.9 3.2 23 204-226 14-36 (107)
496 PRK14531 adenylate kinase; Pro 91.8 0.14 3E-06 50.0 3.3 24 206-229 3-26 (183)
497 TIGR03796 NHPM_micro_ABC1 NHPM 91.8 0.38 8.3E-06 57.5 7.7 25 204-228 504-528 (710)
498 PRK07276 DNA polymerase III su 91.8 5.3 0.00011 42.0 15.1 66 285-351 103-172 (290)
499 PHA02530 pseT polynucleotide k 91.8 0.14 3E-06 54.2 3.4 24 206-229 3-26 (300)
500 COG0488 Uup ATPase components 91.7 0.36 7.9E-06 55.0 6.8 134 204-340 347-511 (530)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.1e-89 Score=837.03 Aligned_cols=528 Identities=39% Similarity=0.658 Sum_probs=477.3
Q ss_pred CCCcceEEecCCcccccCchHHHHHHHHHhCCCceEEcCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhHHHHH
Q 005191 2 ASCKYDVFLSFRGEDTRDNFLSHLVVALQEKKIKTFIDEELTRGDQISPALVKAIEESMISVIIFSKNYASSKWCLDELV 81 (709)
Q Consensus 2 ~~~~ydvFiS~~~~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~wc~~El~ 81 (709)
+.++|||||||||+|+|.+|++||+++|.++||.+|+|+++++|+.|.+++.+||++|+++|||||++|++|.||++||+
T Consensus 9 ~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~ 88 (1153)
T PLN03210 9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88 (1153)
T ss_pred CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCceeEeEEeecCCCcccccCCchhhhhhhhhhhhccchhHHHHHHHHHHHhhhccCCCCCCCCcchhhhHH
Q 005191 82 KILKCHKKNIQLVIPIFYNVDPSVVRNQTGSFKDAFVKHDKQFNKKMPEKVQKWRAVLTEASNLSGWDSNTTRPDAKLVK 161 (709)
Q Consensus 82 ~~~~~~~~~~~~vlPvf~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~v~~w~~aL~~v~~~~g~~~~~~~~e~~~i~ 161 (709)
+|++|+++.++.|+||||+|+|++||+|+|.|+++|.+++.+... +++++||+||++++++.||++..+.+|+++|+
T Consensus 89 ~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~---~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~ 165 (1153)
T PLN03210 89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTE---DEKIQWKQALTDVANILGYHSQNWPNEAKMIE 165 (1153)
T ss_pred HHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccch---hHHHHHHHHHHHHhCcCceecCCCCCHHHHHH
Confidence 999999999999999999999999999999999999998876554 78999999999999999999998899999999
Q ss_pred HHHHHHHhhhhcccCCCCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEee
Q 005191 162 EITADILEKLEKLSAAISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMAN 241 (709)
Q Consensus 162 ~i~~~i~~~l~~~~~~~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~ 241 (709)
+|+.+|.+++.. .++...+.+|||+.+++++..+|..+.+++++|+|+||||+||||||+++|+++..+|+..+|+..
T Consensus 166 ~Iv~~v~~~l~~--~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 166 EIANDVLGKLNL--TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HHHHHHHHhhcc--ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 999999999987 677788999999999999999998777789999999999999999999999999999999988864
Q ss_pred e--cccc---c-----ccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChhhhhhhhcCCCCC
Q 005191 242 V--REES---E-----KCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYGQLEYFDGGLDRF 311 (709)
Q Consensus 242 ~--~~~~---~-----~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~l~~~l~~~ 311 (709)
. .... . .......++.+++..+.... ... ......+++.+.++|+||||||||+..+|+.+.....++
T Consensus 244 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~-~~~-~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~ 321 (1153)
T PLN03210 244 AFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKK-DIK-IYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWF 321 (1153)
T ss_pred cccccchhhcccccccccchhHHHHHHHHHHHhCCC-Ccc-cCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccC
Confidence 2 1110 0 00112345566666653221 111 112356888899999999999999999999999888888
Q ss_pred CCCeEEEEEcCchhhhhhcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhcC
Q 005191 312 GPGSRIIVTTRDKTILERYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFHR 391 (709)
Q Consensus 312 ~~gsrIIvTTR~~~v~~~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~ 391 (709)
++||+||||||+..++..++..++|+++.|+.++|++||+++||+...+++.+.+++.+|+++|+|+||||+++|++|++
T Consensus 322 ~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~ 401 (1153)
T PLN03210 322 GSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRG 401 (1153)
T ss_pred CCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC
Confidence 99999999999999998777788999999999999999999999887778888999999999999999999999999999
Q ss_pred CChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCH-HHHHHHHhccccccCcchhHHHHHHhcCCchHHHHHHHHHhCCCe
Q 005191 392 KSKPDWVNTLNNLKRISDSDIYGVLKIGYDELSW-EEKNLFLDIACFFNGDDREHVMWILNDDYYSVQYGLNVLVNKSLI 470 (709)
Q Consensus 392 ~~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~-~~k~~fl~lA~Fp~~~~~~~l~~l~~~~g~~~~~~l~~L~~rsLI 470 (709)
++..+|+..+++++...+.++..+|+.||+.|++ .+|.||+++|||+.+.+.+.+..++...++.++..++.|+++|||
T Consensus 402 k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi 481 (1153)
T PLN03210 402 RDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLI 481 (1153)
T ss_pred CCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCE
Confidence 9999999999999988888999999999999986 599999999999999999888888888888888899999999999
Q ss_pred EEeCCEEEEcHHHHHHHHHHHhhhcccCCCceecccchhhHHHHHhcCCCCCcccEEEeecCCCccc
Q 005191 471 KISYNKLQMHDLLQEMGREIVCQEFREKPEKRSRLWDHKDVCHVLEKNKEDSYSPAIFFGVGCKFGF 537 (709)
Q Consensus 471 ~~~~~~~~mHdlvr~~a~~~~~~e~~~~~~~~~rl~~~~~~~~~L~~~~~~~~v~~i~ld~~~~~~~ 537 (709)
+...+++.|||++|+||++++++++ ..|++|+|+|.+.++++++.+++++..+++|++|++.+..+
T Consensus 482 ~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 482 HVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred EEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 9998999999999999999999987 67999999999999999999999999999999998877643
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-49 Score=459.97 Aligned_cols=413 Identities=22% Similarity=0.258 Sum_probs=317.4
Q ss_pred cccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH---hhhcccceEEEeeecccccccCCHHHHHHHHHH
Q 005191 185 IGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ---FSQKFEGKYFMANVREESEKCGGLVHLRNQVLS 261 (709)
Q Consensus 185 vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~ 261 (709)
||.+..++.+.+.|..++. .+++|+||||+||||||++++++ +..+|+..+|+. +++. +....++.+++.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~-f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKE-FTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Eccc-ccHHhHHHHHHH
Confidence 9999999999999986543 89999999999999999999995 567899999998 3444 888999999999
Q ss_pred HhcCCCCCCCC---CChhHHHHHHHccCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchhhhhh-cCcceEEE
Q 005191 262 KLLGENFDIGT---PKIPQYIRDRLQRMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKTILER-YGTHRIYE 337 (709)
Q Consensus 262 ~l~~~~~~~~~---~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~-~~~~~~~~ 337 (709)
.++........ .+....+.+.|.++|+||||||||+..+|+.+..+++...+||+|++|||+..|+.. ++....++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 88553333222 237888999999999999999999999999999999988889999999999999998 77788999
Q ss_pred ecCCChHHHHHHhhhcccccC-CCChhhHHHHHHHHHHhcCCchHHHHHhhhhcCC-ChhhHHHHHHHhhcC-------C
Q 005191 338 VEGLNCNEALRLFCSCAFKEN-HCPEDLLKHSETAAHYAKGNPLALQVLGSSFHRK-SKPDWVNTLNNLKRI-------S 408 (709)
Q Consensus 338 L~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~~-~~~ew~~~L~~L~~~-------~ 408 (709)
++.|+.+|||.||++.+|... ...+..++++++++++|+|+|||++++|+.|+.+ +..+|+.+.+.+... .
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 999999999999999998763 3335588999999999999999999999999986 567999999987654 1
Q ss_pred CCcHHhHHHHhhcCCCHHHHHHHHhccccccCc--chhHHHHHHhcCCch------------HHHHHHHHHhCCCeEEeC
Q 005191 409 DSDIYGVLKIGYDELSWEEKNLFLDIACFFNGD--DREHVMWILNDDYYS------------VQYGLNVLVNKSLIKISY 474 (709)
Q Consensus 409 ~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp~~~--~~~~l~~l~~~~g~~------------~~~~l~~L~~rsLI~~~~ 474 (709)
.+.+..++..||+.||++.|.||+|||+||+++ +.+.++.+|+++|+. +..++.+|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 356889999999999999999999999999997 889999999999954 567999999999999874
Q ss_pred -----CEEEEcHHHHHHHHHHHhhhcccCCCceecccchhhHHHHHhcCCCCCcccEEEeecCCCccc-cccc--ccccc
Q 005191 475 -----NKLQMHDLLQEMGREIVCQEFREKPEKRSRLWDHKDVCHVLEKNKEDSYSPAIFFGVGCKFGF-DHFC--QLVGN 546 (709)
Q Consensus 475 -----~~~~mHdlvr~~a~~~~~~e~~~~~~~~~rl~~~~~~~~~L~~~~~~~~v~~i~ld~~~~~~~-~~~~--~~~~~ 546 (709)
.+|.|||+||++|..++.+............ .....+ ..+......++.+++-....... .... ++...
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~--~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tL 550 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEENQIVSD--GVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTL 550 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccceEEEC--CcCccc-cccccchhheeEEEEeccchhhccCCCCCCccceE
Confidence 6799999999999999993321111100000 000000 11112233444444222111000 0000 00000
Q ss_pred cc-cc------CcceeecccCcccccCCCCcccccccccCCCcCccCCccCCccccccccccceeeeeeeeeE
Q 005191 547 VC-VN------SNHVILGFYPCWNIGLSDGATVSFDFFIIPYQLVIGKGGGNKTNDFRAAAADVIQVRVAATV 612 (709)
Q Consensus 547 ~~-~~------~~~~~L~~~~~~~~~~l~~~~l~~~i~~LP~~~~Ig~L~~LetLDlr~T~v~~~~~~v~~~~ 612 (709)
+. .+ -...++...+.++++.+.++. +..+||+ +||+|.|||+||+.+|.|..+|..+....
T Consensus 551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~---~l~~LP~--~I~~Li~LryL~L~~t~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS---SLSKLPS--SIGELVHLRYLDLSDTGISHLPSGLGNLK 618 (889)
T ss_pred EEeecchhhhhcCHHHHhhCcceEEEECCCCC---ccCcCCh--HHhhhhhhhcccccCCCccccchHHHHHH
Confidence 00 00 001113345556666666644 6789999 99999999999999999999998887654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.3e-37 Score=327.93 Aligned_cols=266 Identities=30% Similarity=0.488 Sum_probs=211.6
Q ss_pred cchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH--hhhcccceEEEeeecccccccCCHHHHHHHHHHHhc
Q 005191 187 LESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ--FSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLL 264 (709)
Q Consensus 187 R~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~ 264 (709)
||.++++|.+.|...+++.++|+|+||||+||||||.+++++ +..+|+.++|+..... .....+...++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----ccccccccccccccc
Confidence 789999999999976678999999999999999999999998 7889998888873322 444788888999986
Q ss_pred CCCCCC-C--CCC-hhHHHHHHHccCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchhhhhhcCc-ceEEEec
Q 005191 265 GENFDI-G--TPK-IPQYIRDRLQRMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKTILERYGT-HRIYEVE 339 (709)
Q Consensus 265 ~~~~~~-~--~~~-~~~~l~~~L~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~~~-~~~~~L~ 339 (709)
...... . +.+ ....+.+.|.++++||||||||+...|+.+...++....|++||||||+..++..+.. ...++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 654332 1 112 7788999999999999999999999998888877777789999999999988876654 6789999
Q ss_pred CCChHHHHHHhhhcccccC-CCChhhHHHHHHHHHHhcCCchHHHHHhhhhcCC-ChhhHHHHHHHhhcCC------CCc
Q 005191 340 GLNCNEALRLFCSCAFKEN-HCPEDLLKHSETAAHYAKGNPLALQVLGSSFHRK-SKPDWVNTLNNLKRIS------DSD 411 (709)
Q Consensus 340 ~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~~-~~~ew~~~L~~L~~~~------~~~ 411 (709)
+|+.+||++||.+.++... ...+...+.+++|+++|+|+||||+++|++|+.+ +..+|...++++.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999997655 3445567789999999999999999999999553 6789999998865433 356
Q ss_pred HHhHHHHhhcCCCHHHHHHHHhccccccCc--chhHHHHHHhcCCchH
Q 005191 412 IYGVLKIGYDELSWEEKNLFLDIACFFNGD--DREHVMWILNDDYYSV 457 (709)
Q Consensus 412 i~~~L~~Sy~~L~~~~k~~fl~lA~Fp~~~--~~~~l~~l~~~~g~~~ 457 (709)
+..++..||+.||++.|.||++||+||.++ +.+.++.+|.++|++.
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 999999999999999999999999999986 7999999999998763
No 4
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=291.95 Aligned_cols=153 Identities=27% Similarity=0.486 Sum_probs=140.6
Q ss_pred CCcceEEecCCcccccCchHHHHHHHHHhCCCceEEcC-CCCCCCcccHHHHHHHHhccceeEEeccCcccchhhHHHHH
Q 005191 3 SCKYDVFLSFRGEDTRDNFLSHLVVALQEKKIKTFIDE-ELTRGDQISPALVKAIEESMISVIIFSKNYASSKWCLDELV 81 (709)
Q Consensus 3 ~~~ydvFiS~~~~D~~~~f~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~wc~~El~ 81 (709)
+.+|||||||+|+|++.+|++||+++|+++||+||+|+ ++++|+.|.+.|.+||++|+++|+|||++|++|+||++||.
T Consensus 24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~ 103 (187)
T PLN03194 24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELA 103 (187)
T ss_pred CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHH
Confidence 57899999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCceeEeEEeecCCCccccc-CCchhhhhhhhhhhhccchhHHHHHHHHHHHhhhccCCCCCCC-Ccchhhh
Q 005191 82 KILKCHKKNIQLVIPIFYNVDPSVVRNQ-TGSFKDAFVKHDKQFNKKMPEKVQKWRAVLTEASNLSGWDSNT-TRPDAKL 159 (709)
Q Consensus 82 ~~~~~~~~~~~~vlPvf~~v~p~~vr~~-~g~~~~~~~~~~~~~~~~~~~~v~~w~~aL~~v~~~~g~~~~~-~~~e~~~ 159 (709)
+|+++. +.|+||||+|+|++||+| .|.+ . .+++++||+||.+++++.||++.. .++|+++
T Consensus 104 ~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~-----------~---~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~ 165 (187)
T PLN03194 104 LIMESK----KRVIPIFCDVKPSQLRVVDNGTC-----------P---DEEIRRFNWALEEAKYTVGLTFDSLKGNWSEV 165 (187)
T ss_pred HHHHcC----CEEEEEEecCCHHHhhccccCCC-----------C---HHHHHHHHHHHHHHhccccccCCCCCCCHHHH
Confidence 999864 479999999999999997 4431 1 278999999999999999998763 5789999
Q ss_pred HHHHHHHHHhhhhc
Q 005191 160 VKEITADILEKLEK 173 (709)
Q Consensus 160 i~~i~~~i~~~l~~ 173 (709)
|++|+..|.++|..
T Consensus 166 i~~iv~~v~k~l~~ 179 (187)
T PLN03194 166 VTMASDAVIKNLIE 179 (187)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.79 E-value=4.7e-20 Score=172.91 Aligned_cols=133 Identities=34% Similarity=0.598 Sum_probs=113.2
Q ss_pred EEecCCcccccCchHHHHHHHHHhC--CCceEEcC-CCCCCCcccHHHHHHHHhccceeEEeccCcccchhhHHHHHHHH
Q 005191 8 VFLSFRGEDTRDNFLSHLVVALQEK--KIKTFIDE-ELTRGDQISPALVKAIEESMISVIIFSKNYASSKWCLDELVKIL 84 (709)
Q Consensus 8 vFiS~~~~D~~~~f~~~L~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~wc~~El~~~~ 84 (709)
|||||++.|++..|+++|..+|++. |+++|+++ |+.+|..+.++|.++|++|+++|+|+|++|++|+||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444566999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HhhhhCC--ceeEeEEeecCCCccc-ccCCchhhhhhhhhhhhccc-hhHHHHHHHHHHH
Q 005191 85 KCHKKNI--QLVIPIFYNVDPSVVR-NQTGSFKDAFVKHDKQFNKK-MPEKVQKWRAVLT 140 (709)
Q Consensus 85 ~~~~~~~--~~vlPvf~~v~p~~vr-~~~g~~~~~~~~~~~~~~~~-~~~~v~~w~~aL~ 140 (709)
++....+ ..|+|+||++.+++++ .+.+.+...+..+..-...+ ...+...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9886654 8999999999999999 68888888887766555442 1257889988764
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.77 E-value=1.6e-18 Score=162.22 Aligned_cols=136 Identities=40% Similarity=0.690 Sum_probs=113.6
Q ss_pred cceEEecCCc-ccccCchHHHHHHHHHhCCCceEEcCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhHHHHHHH
Q 005191 5 KYDVFLSFRG-EDTRDNFLSHLVVALQEKKIKTFIDEELTRGDQISPALVKAIEESMISVIIFSKNYASSKWCLDELVKI 83 (709)
Q Consensus 5 ~ydvFiS~~~-~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~wc~~El~~~ 83 (709)
.|||||||++ ++....|+.+|...|...|+.+|.|+....|... .+|.++|++|+++|+|+||+|+.|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 4999999999 4555889999999999999999999844333333 4999999999999999999999999999999999
Q ss_pred HHhhhh-CCceeEeEEeecCCCcccccCCchhhhhhhhhhhhccchhHHHHHHHHHHHhhh
Q 005191 84 LKCHKK-NIQLVIPIFYNVDPSVVRNQTGSFKDAFVKHDKQFNKKMPEKVQKWRAVLTEAS 143 (709)
Q Consensus 84 ~~~~~~-~~~~vlPvf~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~v~~w~~aL~~v~ 143 (709)
..+... ...+||||+++..|+.+.++.+.+...+......+..+. .+ ..|+..+..+.
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~-~~-~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDE-KE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCch-hH-HHHHHHHHHhc
Confidence 987754 567999999998898899999999999888766666532 11 68998877654
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.62 E-value=5.2e-14 Score=171.69 Aligned_cols=297 Identities=15% Similarity=0.133 Sum_probs=188.7
Q ss_pred CCCCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHH
Q 005191 176 AAISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 176 ~~~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l 255 (709)
.+|..+..+|-|..-++.|.. ....+++.|+|++|.||||++.++.++ ++.+.|+. +.... .+...+
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~~d---~~~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDESD---NQPERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCccc---CCHHHH
Confidence 356667789999876665543 235789999999999999999998864 23577885 32221 334445
Q ss_pred HHHHHHHhcCCCCC-----------CCCCC---hhHHHHHHHc--cCceEEEecCCCChh--hh-hhhhcCCCCCCCCeE
Q 005191 256 RNQVLSKLLGENFD-----------IGTPK---IPQYIRDRLQ--RMKVFIVLDDVNKYG--QL-EYFDGGLDRFGPGSR 316 (709)
Q Consensus 256 ~~~ll~~l~~~~~~-----------~~~~~---~~~~l~~~L~--~kr~LLVLDdv~~~~--~~-~~l~~~l~~~~~gsr 316 (709)
...++..+...... ..... ....+...+. +.+++|||||+...+ .. +.+...+....++.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 55555555211110 00011 1222223332 579999999995432 21 222222222356778
Q ss_pred EEEEcCchhhhh--hc-CcceEEEec----CCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 317 IIVTTRDKTILE--RY-GTHRIYEVE----GLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 317 IIvTTR~~~v~~--~~-~~~~~~~L~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
+|||||...... .. -.....++. +|+.+|+.+||....... ...+.+.+|.+.|+|+|+++..++..+
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 989999852221 11 012344555 899999999997765221 123457899999999999999998877
Q ss_pred cCCChhhHHHHHHHhhcCCCCcHHhHHHHh-hcCCCHHHHHHHHhccccccCcchhHHHHHHhcCCchHHHHHHHHHhCC
Q 005191 390 HRKSKPDWVNTLNNLKRISDSDIYGVLKIG-YDELSWEEKNLFLDIACFFNGDDREHVMWILNDDYYSVQYGLNVLVNKS 468 (709)
Q Consensus 390 ~~~~~~ew~~~L~~L~~~~~~~i~~~L~~S-y~~L~~~~k~~fl~lA~Fp~~~~~~~l~~l~~~~g~~~~~~l~~L~~rs 468 (709)
...... .......+.......+...+... ++.||++.+.++..+|+++ .++.+.+..+... ..+...++.|.+.+
T Consensus 230 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~ 305 (903)
T PRK04841 230 RQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQG 305 (903)
T ss_pred hhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCC
Confidence 543211 11111222221234566655444 8999999999999999987 6676666666543 24678899999999
Q ss_pred CeEE-e---CCEEEEcHHHHHHHHHHHhhh
Q 005191 469 LIKI-S---YNKLQMHDLLQEMGREIVCQE 494 (709)
Q Consensus 469 LI~~-~---~~~~~mHdlvr~~a~~~~~~e 494 (709)
++.. . ...|++|++++++++.....+
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 9653 2 236999999999999887544
No 8
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.52 E-value=3.6e-15 Score=131.58 Aligned_cols=87 Identities=31% Similarity=0.569 Sum_probs=75.3
Q ss_pred EEecCCcccccCchHHHHHHHHHhCCCceEEcCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhHHHHHHHHHhh
Q 005191 8 VFLSFRGEDTRDNFLSHLVVALQEKKIKTFIDEELTRGDQISPALVKAIEESMISVIIFSKNYASSKWCLDELVKILKCH 87 (709)
Q Consensus 8 vFiS~~~~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~wc~~El~~~~~~~ 87 (709)
|||||+++| ..++.+|.+.|+..|+++|+|.++.+|+.+.+.|.++|++|+..|+++|++|..|+||..|+..+.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~--- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW--- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH---
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH---
Confidence 899999999 679999999999999999999989999999999999999999999999999999999999998883
Q ss_pred hhCCceeEeEEee
Q 005191 88 KKNIQLVIPIFYN 100 (709)
Q Consensus 88 ~~~~~~vlPvf~~ 100 (709)
..++.|+||..+
T Consensus 76 -~~~~~iipv~~~ 87 (102)
T PF13676_consen 76 -KRGKPIIPVRLD 87 (102)
T ss_dssp -CTSESEEEEECS
T ss_pred -HCCCEEEEEEEC
Confidence 244589999744
No 9
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.44 E-value=1.5e-12 Score=154.64 Aligned_cols=325 Identities=16% Similarity=0.177 Sum_probs=200.5
Q ss_pred CccccchhhhHHHhhhhccC-CCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecc-cc--cccCCHHHHHHH
Q 005191 183 GLIGLESHVEQVRSLLAIGL-PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVRE-ES--EKCGGLVHLRNQ 258 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~-~~--~~~~~l~~l~~~ 258 (709)
.++||+.+++.|...+.... ....++.+.|.+|||||+|+++|...+.+.+ ..++..--. .. .+...+.+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcccccCCCchHHHHHHHHH
Confidence 37999999999999998643 3478999999999999999999999765551 111110000 00 000112223333
Q ss_pred HHHHh-------------------cCCCCC--------------------CCCCCh--------hHHHHHHH-ccCceEE
Q 005191 259 VLSKL-------------------LGENFD--------------------IGTPKI--------PQYIRDRL-QRMKVFI 290 (709)
Q Consensus 259 ll~~l-------------------~~~~~~--------------------~~~~~~--------~~~l~~~L-~~kr~LL 290 (709)
+..++ +..... .+.... ...+.... +.+|.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33322 111100 000000 11111222 3469999
Q ss_pred EecCC-CChh----hhhhhhcCCC--CC-CCCeEEEEEcCch--hhhhhcCcceEEEecCCChHHHHHHhhhcccccCCC
Q 005191 291 VLDDV-NKYG----QLEYFDGGLD--RF-GPGSRIIVTTRDK--TILERYGTHRIYEVEGLNCNEALRLFCSCAFKENHC 360 (709)
Q Consensus 291 VLDdv-~~~~----~~~~l~~~l~--~~-~~gsrIIvTTR~~--~v~~~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~ 360 (709)
|+||+ |-+. -++.++.... .+ .+....+.|.+.. .+.........+.|.||+..+...|..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 99999 5322 2333333322 00 0111222333332 12222234478999999999999999887743222
Q ss_pred ChhhHHHHHHHHHHhcCCchHHHHHhhhhcCC-------ChhhHHHHHHHhhcCC-CCcHHhHHHHhhcCCCHHHHHHHH
Q 005191 361 PEDLLKHSETAAHYAKGNPLALQVLGSSFHRK-------SKPDWVNTLNNLKRIS-DSDIYGVLKIGYDELSWEEKNLFL 432 (709)
Q Consensus 361 ~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~~-------~~~ew~~~L~~L~~~~-~~~i~~~L~~Sy~~L~~~~k~~fl 432 (709)
...+....|++++.|+|+.+..+-..+... +...|..-..++.... .+++.+.+....+.||...|+++.
T Consensus 238 --~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 238 --LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred --ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 234568899999999999999999988763 2344544444433222 133566799999999999999999
Q ss_pred hccccccCcchhHHHHHHhcCCchHHHHHHHHHhCCCeEEe---------CCEE---EEcHHHHHHHHHHHhhhcccCCC
Q 005191 433 DIACFFNGDDREHVMWILNDDYYSVQYGLNVLVNKSLIKIS---------YNKL---QMHDLLQEMGREIVCQEFREKPE 500 (709)
Q Consensus 433 ~lA~Fp~~~~~~~l~~l~~~~g~~~~~~l~~L~~rsLI~~~---------~~~~---~mHdlvr~~a~~~~~~e~~~~~~ 500 (709)
..||+++.++.+.|..++...+......+......++|.+. .... ..|+++|+.+.....+.
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~------ 389 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES------ 389 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh------
Confidence 99999999999999999986555555556666666666652 1112 56999999988766554
Q ss_pred ceecccchhhHHHHHhcCCC
Q 005191 501 KRSRLWDHKDVCHVLEKNKE 520 (709)
Q Consensus 501 ~~~rl~~~~~~~~~L~~~~~ 520 (709)
.|...|..+...|..+..
T Consensus 390 --~rq~~H~~i~~lL~~~~~ 407 (849)
T COG3899 390 --QRQYLHLRIGQLLEQNIP 407 (849)
T ss_pred --hHHHHHHHHHHHHHHhCC
Confidence 344567777777766653
No 10
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.36 E-value=1.4e-10 Score=127.90 Aligned_cols=284 Identities=15% Similarity=0.073 Sum_probs=166.4
Q ss_pred CCCCCCccccchhhhHHHhhhhcc--CCCceEEEEEccCCCchhHHHHHHHHHhhhcccc--eEEEeeecccccccCCHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIG--LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEG--KYFMANVREESEKCGGLV 253 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~v~~~~~~~~~~~~l~ 253 (709)
...|+.++||++++++|...+... ......+.|+|++|+|||++++.+++.+....+. .+++. .... ....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~~~----~~~~ 100 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQID----RTRY 100 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CCcC----CCHH
Confidence 346788999999999999998542 2345667899999999999999999987665422 23332 2211 3456
Q ss_pred HHHHHHHHHhcCCCCCCCC---CChhHHHHHHHc--cCceEEEecCCCChh------hhhhhhcCCCCCC-CCeEEEEEc
Q 005191 254 HLRNQVLSKLLGENFDIGT---PKIPQYIRDRLQ--RMKVFIVLDDVNKYG------QLEYFDGGLDRFG-PGSRIIVTT 321 (709)
Q Consensus 254 ~l~~~ll~~l~~~~~~~~~---~~~~~~l~~~L~--~kr~LLVLDdv~~~~------~~~~l~~~l~~~~-~gsrIIvTT 321 (709)
.+...++.++......... .+....+.+.+. +++.+||||+++... .+..+........ .+..+|.++
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~ 180 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEE
Confidence 6777888887542211111 124555666654 356899999997532 3344433222111 133356666
Q ss_pred CchhhhhhcC-------cceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHh----cCCchHHHHHhhhh-
Q 005191 322 RDKTILERYG-------THRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYA----KGNPLALQVLGSSF- 389 (709)
Q Consensus 322 R~~~v~~~~~-------~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~----gGlPLAL~~la~~L- 389 (709)
....+..... ....+.+++++.++..+++..++-....+.....+.++.+++.+ |..+.|+..+-...
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5543322211 12467899999999999998776321111111223344444444 44667776654322
Q ss_pred -c---CC---ChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhccccc----cCcchhHHHH----H---Hh
Q 005191 390 -H---RK---SKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIACFF----NGDDREHVMW----I---LN 451 (709)
Q Consensus 390 -~---~~---~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp----~~~~~~~l~~----l---~~ 451 (709)
. +. +.+.....++.+. .......+..||.++|.++..++... .......+.. + ..
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 11 3445555555431 23455678899999999888776443 2223333322 1 22
Q ss_pred cCC---chHHHHHHHHHhCCCeEEe
Q 005191 452 DDY---YSVQYGLNVLVNKSLIKIS 473 (709)
Q Consensus 452 ~~g---~~~~~~l~~L~~rsLI~~~ 473 (709)
... .....+++.|.+.|||...
T Consensus 334 ~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 YEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 111 2245689999999999864
No 11
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.28 E-value=1.7e-10 Score=130.49 Aligned_cols=295 Identities=16% Similarity=0.162 Sum_probs=191.0
Q ss_pred CCCCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHH
Q 005191 176 AAISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 176 ~~~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l 255 (709)
.+|..+.+.|-|..-++.|.+. .+.|.+.|..|+|.|||||+.+++. ....-..+.|+..... ..+...+
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~----dndp~rF 82 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDES----DNDPARF 82 (894)
T ss_pred CCCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCc----cCCHHHH
Confidence 3455577888888666655542 3589999999999999999999988 4444567888873322 2566778
Q ss_pred HHHHHHHhcCCCCCCCCC-----------C---hhHHHHHHHc--cCceEEEecCCCC------hhhhhhhhcCCCCCCC
Q 005191 256 RNQVLSKLLGENFDIGTP-----------K---IPQYIRDRLQ--RMKVFIVLDDVNK------YGQLEYFDGGLDRFGP 313 (709)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~-----------~---~~~~l~~~L~--~kr~LLVLDdv~~------~~~~~~l~~~l~~~~~ 313 (709)
...++..++.-.+...+. . +...+...+. .++..+||||..- ...++.+.... .+
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~ 159 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PE 159 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CC
Confidence 888888775333222111 1 2223333333 3689999999842 22445555543 47
Q ss_pred CeEEEEEcCchhhhhhcC---cceEEEec----CCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHh
Q 005191 314 GSRIIVTTRDKTILERYG---THRIYEVE----GLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLG 386 (709)
Q Consensus 314 gsrIIvTTR~~~v~~~~~---~~~~~~L~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la 386 (709)
+..+|+|||...-..... .+...++. .++.+|+.++|..+.. .+.....++.+.+.++|-+-|+..++
T Consensus 160 ~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~a 234 (894)
T COG2909 160 NLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIA 234 (894)
T ss_pred CeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHH
Confidence 889999999873222110 11223333 4899999999987651 11223457899999999999999998
Q ss_pred hhhcCC-ChhhHHHHHHHhhcCCCCcHHh-HHHHhhcCCCHHHHHHHHhccccccCcchhHHHHHHhcCCchHHHHHHHH
Q 005191 387 SSFHRK-SKPDWVNTLNNLKRISDSDIYG-VLKIGYDELSWEEKNLFLDIACFFNGDDREHVMWILNDDYYSVQYGLNVL 464 (709)
Q Consensus 387 ~~L~~~-~~~ew~~~L~~L~~~~~~~i~~-~L~~Sy~~L~~~~k~~fl~lA~Fp~~~~~~~l~~l~~~~g~~~~~~l~~L 464 (709)
=.+++. +.+.-...+. .. .+.+.+ ....-++.||+++|..++.+|+++. ++-+-...+... ......+++|
T Consensus 235 La~~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~--~ng~amLe~L 307 (894)
T COG2909 235 LALRNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGE--ENGQAMLEEL 307 (894)
T ss_pred HHccCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcC--CcHHHHHHHH
Confidence 888732 2222111111 00 111222 3455678999999999999999853 233333333322 2456679999
Q ss_pred HhCCCeEEe----CCEEEEcHHHHHHHHHHHhhhc
Q 005191 465 VNKSLIKIS----YNKLQMHDLLQEMGREIVCQEF 495 (709)
Q Consensus 465 ~~rsLI~~~----~~~~~mHdlvr~~a~~~~~~e~ 495 (709)
.+++|+-.. ++.|+.|.+..+|.+.....+.
T Consensus 308 ~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 308 ERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred HhCCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 999987643 6679999999999998777653
No 12
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=2.8e-09 Score=116.36 Aligned_cols=284 Identities=15% Similarity=0.094 Sum_probs=162.3
Q ss_pred CCCCCCccccchhhhHHHhhhhc--cCCCceEEEEEccCCCchhHHHHHHHHHhhhccc------ceEEEeeeccccccc
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAI--GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE------GKYFMANVREESEKC 249 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~------~~~~v~~~~~~~~~~ 249 (709)
...|+.++||++++++|...|.. .......+.|+|++|+|||++++.+++.+....+ ..+|+. ....
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~~~~---- 85 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-CQIL---- 85 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-CCCC----
Confidence 44567899999999999999874 1234567899999999999999999997654322 123333 2211
Q ss_pred CCHHHHHHHHHHHhc--CCCCCCCC---CChhHHHHHHHc--cCceEEEecCCCChh-----hhhhhhcC--CCCC-CCC
Q 005191 250 GGLVHLRNQVLSKLL--GENFDIGT---PKIPQYIRDRLQ--RMKVFIVLDDVNKYG-----QLEYFDGG--LDRF-GPG 314 (709)
Q Consensus 250 ~~l~~l~~~ll~~l~--~~~~~~~~---~~~~~~l~~~L~--~kr~LLVLDdv~~~~-----~~~~l~~~--l~~~-~~g 314 (709)
.....+...++.++. +....... .+....+.+.+. +++++||||+++... .+..+... .... +..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 344567777777773 11111111 113344555553 467899999997651 12233222 1111 123
Q ss_pred eEEEEEcCchhhhhhcC-------cceEEEecCCChHHHHHHhhhccc---ccCCCChhhHHHHHHHHHHhcCCchHHHH
Q 005191 315 SRIIVTTRDKTILERYG-------THRIYEVEGLNCNEALRLFCSCAF---KENHCPEDLLKHSETAAHYAKGNPLALQV 384 (709)
Q Consensus 315 srIIvTTR~~~v~~~~~-------~~~~~~L~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~ 384 (709)
..+|.+|.......... ....+.+++++.++..+++..++- ......+...+.+..++..+.|.|-.+..
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 34555554443222111 125689999999999999988763 11122333334455667777898854433
Q ss_pred Hh-hhh--c---C---CChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhcccccc----CcchhHHHH---
Q 005191 385 LG-SSF--H---R---KSKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIACFFN----GDDREHVMW--- 448 (709)
Q Consensus 385 la-~~L--~---~---~~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp~----~~~~~~l~~--- 448 (709)
+. ... . + -+.+......+.+. ......++..||.+++.++..++..-. .+....+..
T Consensus 246 ~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 246 LLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 22 111 1 1 13334444444331 234556778999999888777663321 123333322
Q ss_pred -HHhcCC------chHHHHHHHHHhCCCeEEe
Q 005191 449 -ILNDDY------YSVQYGLNVLVNKSLIKIS 473 (709)
Q Consensus 449 -l~~~~g------~~~~~~l~~L~~rsLI~~~ 473 (709)
+....| ....+++..|...|||...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 111112 1255689999999999965
No 13
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.23 E-value=1.9e-11 Score=124.12 Aligned_cols=196 Identities=20% Similarity=0.270 Sum_probs=100.8
Q ss_pred ccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHH------HH
Q 005191 184 LIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHL------RN 257 (709)
Q Consensus 184 ~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l------~~ 257 (709)
|+||+.|+++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.........+|+......... ..... ..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES--SLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH--HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh--HHHHHHHHHHHHH
Confidence 799999999999998753 357899999999999999999999875443344444422221110 11111 11
Q ss_pred HHHHHh----cCCCC-------CCCCCChhHHHHHHHcc--CceEEEecCCCChh-----------hhhhhhcCCCCCCC
Q 005191 258 QVLSKL----LGENF-------DIGTPKIPQYIRDRLQR--MKVFIVLDDVNKYG-----------QLEYFDGGLDRFGP 313 (709)
Q Consensus 258 ~ll~~l----~~~~~-------~~~~~~~~~~l~~~L~~--kr~LLVLDdv~~~~-----------~~~~l~~~l~~~~~ 313 (709)
.+...+ ..... ..........+.+.+.. ++++||+||+.... .+..+...... ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cC
Confidence 111112 11110 00111133333344433 45999999996544 11222222222 23
Q ss_pred CeEEEEEcCchhhhhh--------cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHH
Q 005191 314 GSRIIVTTRDKTILER--------YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 314 gsrIIvTTR~~~v~~~--------~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
...+|+++........ .+....+.+++|+.+++.+++....-..... +...+..++|+..+||+|..|..+
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhcC
Confidence 3344455444433322 2233459999999999999998865222111 124556799999999999988653
No 14
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.22 E-value=3.3e-10 Score=120.51 Aligned_cols=263 Identities=16% Similarity=0.150 Sum_probs=156.3
Q ss_pred CCccccchhhhHHHhhhhcc---CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 182 DGLIGLESHVEQVRSLLAIG---LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
..|||+++.+++|..++... ....+.+.++|++|+|||+||+.+++.+...+. ....... ..... ...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~----~~~~~-l~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL----EKPGD-LAA 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh----cCchh-HHH
Confidence 46999999999999988632 233566889999999999999999997654321 1111000 01111 112
Q ss_pred HHHHhcCCCC-CCCC-----CChhHHHHHHHccCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchhhhhhc--
Q 005191 259 VLSKLLGENF-DIGT-----PKIPQYIRDRLQRMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKTILERY-- 330 (709)
Q Consensus 259 ll~~l~~~~~-~~~~-----~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~-- 330 (709)
.+..+..... -+++ .+..+.+...+.+.+..+|+++..+..++.... .+.+-|..||+...+....
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL------PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecC------CCeEEEEecCCccccCHHHHh
Confidence 2222211100 0000 012233444444445555555543333332111 2344556677764333321
Q ss_pred CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhcC------C---ChhhHHHHH
Q 005191 331 GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFHR------K---SKPDWVNTL 401 (709)
Q Consensus 331 ~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~------~---~~~ew~~~L 401 (709)
.....+.+++++.++..+++.+.+.... .....+.+..|++.|+|.|-.+..++..+.. . +.+....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~-- 224 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK-- 224 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH--
Confidence 1235679999999999999988774322 1233466789999999999776655554311 0 1111111
Q ss_pred HHhhcCCCCcHHhHHHHhhcCCCHHHHHHHH-hccccccC-cchhHHHHHHhcCCchHHHHHH-HHHhCCCeEEe
Q 005191 402 NNLKRISDSDIYGVLKIGYDELSWEEKNLFL-DIACFFNG-DDREHVMWILNDDYYSVQYGLN-VLVNKSLIKIS 473 (709)
Q Consensus 402 ~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl-~lA~Fp~~-~~~~~l~~l~~~~g~~~~~~l~-~L~~rsLI~~~ 473 (709)
....+...+..|++..+..+. .++.+..+ ...+.+...+..+...++..++ .|++++||...
T Consensus 225 ----------~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 225 ----------ALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred ----------HHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 112245668889998888777 44666543 5788899999888888899899 69999999754
No 15
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.21 E-value=2e-10 Score=123.35 Aligned_cols=273 Identities=16% Similarity=0.142 Sum_probs=157.6
Q ss_pred CCCCCCccccchhhhHHHhhhhc---cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAI---GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVH 254 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~ 254 (709)
|.....|+|++..++.+..++.. .....+.+.|+|++|+|||+||+.+++.+...+. +.. .... .. ..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~-~~----~~ 91 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPAL-EK----PG 91 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccc-cC----hH
Confidence 34567799999999999888763 2234567889999999999999999998654321 111 1000 00 11
Q ss_pred HHHHHHHHhcCCC-CCCCCC-----ChhHHHHHHHccCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchhhhh
Q 005191 255 LRNQVLSKLLGEN-FDIGTP-----KIPQYIRDRLQRMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKTILE 328 (709)
Q Consensus 255 l~~~ll~~l~~~~-~~~~~~-----~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~ 328 (709)
....++..+.... .-+++. ...+.+...+.+.+..+++|+..+...+.. .+ .+.+-|..|++...+..
T Consensus 92 ~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~ 165 (328)
T PRK00080 92 DLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTS 165 (328)
T ss_pred HHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---cC---CCceEEeecCCcccCCH
Confidence 1122222221100 000000 012222333333344444444322221111 01 12344556666543332
Q ss_pred hc--CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhcCCChhhHHHHHHHhhc
Q 005191 329 RY--GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFHRKSKPDWVNTLNNLKR 406 (709)
Q Consensus 329 ~~--~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~~~~~ew~~~L~~L~~ 406 (709)
.. .....+++++++.++..+++.+.+.... .....+.+..|++.|+|.|-.+..+...+.. |..... -..
T Consensus 166 ~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~-----~a~~~~-~~~ 237 (328)
T PRK00080 166 PLRDRFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVRD-----FAQVKG-DGV 237 (328)
T ss_pred HHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHHH-----HHHHcC-CCC
Confidence 21 1135689999999999999998874332 2233467899999999999766555554321 110000 000
Q ss_pred CCC---CcHHhHHHHhhcCCCHHHHHHHH-hccccccC-cchhHHHHHHhcCCchHHHHHH-HHHhCCCeEEe
Q 005191 407 ISD---SDIYGVLKIGYDELSWEEKNLFL-DIACFFNG-DDREHVMWILNDDYYSVQYGLN-VLVNKSLIKIS 473 (709)
Q Consensus 407 ~~~---~~i~~~L~~Sy~~L~~~~k~~fl-~lA~Fp~~-~~~~~l~~l~~~~g~~~~~~l~-~L~~rsLI~~~ 473 (709)
... ......+...+..|++..+..+. .+..|..+ ...+.+...+..+...+++.++ .|++.+||+..
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 000 11223456667889998888886 66677655 5889999999888888888888 99999999754
No 16
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.07 E-value=3.8e-09 Score=110.15 Aligned_cols=179 Identities=15% Similarity=0.112 Sum_probs=108.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
+...+.|+|++|+|||||++.+++.+...--..+++.. .. .+..++...+...++..............+.+.+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~-~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TR-VDAEDLLRMVAADFGLETEGRDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CC-CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876532111122221 11 3445677777777654322211111233333322
Q ss_pred -----ccCceEEEecCCCChh--hhhhhh---cCCCCCCCCeEEEEEcCchhhhhhc----------CcceEEEecCCCh
Q 005191 284 -----QRMKVFIVLDDVNKYG--QLEYFD---GGLDRFGPGSRIIVTTRDKTILERY----------GTHRIYEVEGLNC 343 (709)
Q Consensus 284 -----~~kr~LLVLDdv~~~~--~~~~l~---~~l~~~~~gsrIIvTTR~~~v~~~~----------~~~~~~~L~~L~~ 343 (709)
.+++.+||+||++... .++.+. ...........|++|.... ..... .....+++++|+.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 5678999999997633 344433 2211112333456665433 11111 1134678999999
Q ss_pred HHHHHHhhhcccccC--CCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 344 NEALRLFCSCAFKEN--HCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 344 ~ea~~Lf~~~a~~~~--~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
+|..+++...+.... ....-..+..+.|++.++|+|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999887663221 1122345788999999999999999988876
No 17
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.06 E-value=1e-10 Score=123.25 Aligned_cols=281 Identities=19% Similarity=0.213 Sum_probs=196.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
..+.+.++|.|||||||++..+.. +...|...+++......+++ ..+.-.+...++-...+ .......+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~----~~v~~~~ag~~gl~~~~--g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDP----ALVFPTLAGALGLHVQP--GDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCch----hHhHHHHHhhccccccc--chHHHHHHHHHH
Confidence 468999999999999999999999 88889999988877776554 22333333333222111 111455677788
Q ss_pred ccCceEEEecCCCCh-hhhhhhhcCCCCCCCCeEEEEEcCchhhhhhcCcceEEEecCCChH-HHHHHhhhcccccC---
Q 005191 284 QRMKVFIVLDDVNKY-GQLEYFDGGLDRFGPGSRIIVTTRDKTILERYGTHRIYEVEGLNCN-EALRLFCSCAFKEN--- 358 (709)
Q Consensus 284 ~~kr~LLVLDdv~~~-~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~~~~~~~~L~~L~~~-ea~~Lf~~~a~~~~--- 358 (709)
.+++.++|+||.... ++...+...+...++.-.++.|+|...... .+..+.+++|+.. ++.++|...+....
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~---ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA---GEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc---ccccccCCccccCCchhHHHHHHHHHhccce
Confidence 899999999999653 333444444444466778899999864332 5677888888876 78899877663211
Q ss_pred CCChhhHHHHHHHHHHhcCCchHHHHHhhhhcCCChhhHHHHHHH----hhcCC------CCcHHhHHHHhhcCCCHHHH
Q 005191 359 HCPEDLLKHSETAAHYAKGNPLALQVLGSSFHRKSKPDWVNTLNN----LKRIS------DSDIYGVLKIGYDELSWEEK 428 (709)
Q Consensus 359 ~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~~~~~ew~~~L~~----L~~~~------~~~i~~~L~~Sy~~L~~~~k 428 (709)
...........+|+++..|.|++|..+++..+.....+....++. +.... .......+.+||.-|...++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 122334456889999999999999999999988776665544443 33221 23467789999999999999
Q ss_pred HHHHhccccccCcchhHHHHHHhc-----CCchHHHHHHHHHhCCCeEEe----CCEEEEcHHHHHHHHHHHhhh
Q 005191 429 NLFLDIACFFNGDDREHVMWILND-----DYYSVQYGLNVLVNKSLIKIS----YNKLQMHDLLQEMGREIVCQE 494 (709)
Q Consensus 429 ~~fl~lA~Fp~~~~~~~l~~l~~~-----~g~~~~~~l~~L~~rsLI~~~----~~~~~mHdlvr~~a~~~~~~e 494 (709)
-.|..++.|...|+.+.....-.. +.+.....+..|+++|++... .-.|+.-+-++.|+.+...+.
T Consensus 243 ~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 243 ALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred HHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999877633222211 233455678889999998865 234777777788877766654
No 18
>PF05729 NACHT: NACHT domain
Probab=98.99 E-value=2.9e-09 Score=101.96 Aligned_cols=143 Identities=20% Similarity=0.298 Sum_probs=85.0
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhccc-----ceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFE-----GKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIR 280 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-----~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~ 280 (709)
|++.|+|.+|+||||+++.++.++..... ...++...+..... .....+...+.......... ....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~-----~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS-NNSRSLADLLFDQLPESIAP-----IEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc-cccchHHHHHHHhhccchhh-----hHHHHH
Confidence 57899999999999999999998765532 22333334333322 11123333333333221111 111122
Q ss_pred HH-HccCceEEEecCCCChhh---------hhhhh-cCCCC-CCCCeEEEEEcCchhh---hhhcCcceEEEecCCChHH
Q 005191 281 DR-LQRMKVFIVLDDVNKYGQ---------LEYFD-GGLDR-FGPGSRIIVTTRDKTI---LERYGTHRIYEVEGLNCNE 345 (709)
Q Consensus 281 ~~-L~~kr~LLVLDdv~~~~~---------~~~l~-~~l~~-~~~gsrIIvTTR~~~v---~~~~~~~~~~~L~~L~~~e 345 (709)
.. ...++++||||++++... +..++ ..+.. ..+++++|||+|.... .........+++.+|+.++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 256899999999965322 12222 11221 2578999999998765 2233344689999999999
Q ss_pred HHHHhhhcc
Q 005191 346 ALRLFCSCA 354 (709)
Q Consensus 346 a~~Lf~~~a 354 (709)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999987654
No 19
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.75 E-value=8.1e-08 Score=100.99 Aligned_cols=235 Identities=16% Similarity=0.214 Sum_probs=130.0
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHH
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLS 261 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~ 261 (709)
.+++|-+..+.. ++. ++.+....+||++|+||||||+.++......|...--+. .+..++..-+ .
T Consensus 30 ~HLlg~~~~lrr---~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~---------~gvkdlr~i~-e 94 (436)
T COG2256 30 EHLLGEGKPLRR---AVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT---------SGVKDLREII-E 94 (436)
T ss_pred HhhhCCCchHHH---HHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---------ccHHHHHHHH-H
Confidence 344554444443 333 335677789999999999999999997766654221111 3333333222 1
Q ss_pred HhcCCCCCCCCCChhHHHHHHHccCceEEEecCCC--ChhhhhhhhcCCCCCCCCeEEEE--EcCchhhh---hhcCcce
Q 005191 262 KLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVN--KYGQLEYFDGGLDRFGPGSRIIV--TTRDKTIL---ERYGTHR 334 (709)
Q Consensus 262 ~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~--~~~~~~~l~~~l~~~~~gsrIIv--TTR~~~v~---~~~~~~~ 334 (709)
. .-+....+++.+|++|.|. +..+-+.|++.+ ..|.-|+| ||-++... ...+...
T Consensus 95 ~---------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 95 E---------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred H---------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 1 1122334789999999995 455667777765 35666665 66665321 1123457
Q ss_pred EEEecCCChHHHHHHhhhcccccC-----CCChhhHHHHHHHHHHhcCCchHHHH---HhhhhcC-C---ChhhHHHHHH
Q 005191 335 IYEVEGLNCNEALRLFCSCAFKEN-----HCPEDLLKHSETAAHYAKGNPLALQV---LGSSFHR-K---SKPDWVNTLN 402 (709)
Q Consensus 335 ~~~L~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~Iv~~~gGlPLAL~~---la~~L~~-~---~~~ew~~~L~ 402 (709)
++++++|+.++-.+++.+-+.... ......++....+++.++|---+.-- ++..+.. . ..+..++.++
T Consensus 157 vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~ 236 (436)
T COG2256 157 VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQ 236 (436)
T ss_pred eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHh
Confidence 999999999999999987332111 11112345677888888886543322 2222222 1 1233344443
Q ss_pred HhhcC------CCCcHHhHHHHhhcCCCHHHHHHHHhccccccCcchhHHHHHH
Q 005191 403 NLKRI------SDSDIYGVLKIGYDELSWEEKNLFLDIACFFNGDDREHVMWIL 450 (709)
Q Consensus 403 ~L~~~------~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp~~~~~~~l~~l~ 450 (709)
+-... .+-++..+|..|...=++++- ++..+-++-.|.+...+.+++
T Consensus 237 ~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAA-LyylARmi~~GeDp~yiARRl 289 (436)
T COG2256 237 RRSARFDKDGDAHYDLISALHKSVRGSDPDAA-LYYLARMIEAGEDPLYIARRL 289 (436)
T ss_pred hhhhccCCCcchHHHHHHHHHHhhccCCcCHH-HHHHHHHHhcCCCHHHHHHHH
Confidence 31111 112366677777766655432 222223344455565555544
No 20
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.68 E-value=9.9e-07 Score=97.76 Aligned_cols=180 Identities=17% Similarity=0.293 Sum_probs=107.5
Q ss_pred CCCCCccccchhhhH---HHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHH
Q 005191 179 SDSDGLIGLESHVEQ---VRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 179 ~~~~~~vGR~~el~~---L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l 255 (709)
...+.+||.+..+.. +..++..+ ....+.|+|++|+||||||+.+++.....|. .+. ... .+...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~---a~~---~~~~~- 76 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALS---AVT---SGVKD- 76 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEe---ccc---ccHHH-
Confidence 345678999888766 77777643 4567889999999999999999987654331 111 000 11111
Q ss_pred HHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEE--EcCchh--hhh-
Q 005191 256 RNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIV--TTRDKT--ILE- 328 (709)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIv--TTR~~~--v~~- 328 (709)
.+.++.... .....+++.+|+||+++.. .+.+.++..+. .+..++| ||.+.. +..
T Consensus 77 ir~ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 77 LREVIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 112221110 0011357789999999753 45556665543 2444444 344432 111
Q ss_pred hcCcceEEEecCCChHHHHHHhhhcccccCCCC-hhhHHHHHHHHHHhcCCchHHHHHhhh
Q 005191 329 RYGTHRIYEVEGLNCNEALRLFCSCAFKENHCP-EDLLKHSETAAHYAKGNPLALQVLGSS 388 (709)
Q Consensus 329 ~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~Iv~~~gGlPLAL~~la~~ 388 (709)
..+...++.+.+++.++..+++.+.+....... ....+..+.|++.++|.|..+..+...
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 112236789999999999999987653211111 233466788999999999776554443
No 21
>PRK06893 DNA replication initiation factor; Validated
Probab=98.66 E-value=2.6e-07 Score=93.88 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=94.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ 284 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 284 (709)
.+.+.|+|++|+|||+|+..+++....+.....|+... .. ...... +.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-~~-------~~~~~~--------------------~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-KS-------QYFSPA--------------------VLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-Hh-------hhhhHH--------------------HHhhcc
Confidence 46789999999999999999999876665566666521 00 000001 111111
Q ss_pred cCceEEEecCCCCh---hhhh-hhhcCCCCC-CCCeEEEE-EcCc---------hhhhhhcCcceEEEecCCChHHHHHH
Q 005191 285 RMKVFIVLDDVNKY---GQLE-YFDGGLDRF-GPGSRIIV-TTRD---------KTILERYGTHRIYEVEGLNCNEALRL 349 (709)
Q Consensus 285 ~kr~LLVLDdv~~~---~~~~-~l~~~l~~~-~~gsrIIv-TTR~---------~~v~~~~~~~~~~~L~~L~~~ea~~L 349 (709)
+.-+|+|||++.. ..|+ .+...+... ..|..+|+ |+.. +.+...+....++++++++.++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 2349999999753 3333 222222211 23555654 4543 23344444456889999999999999
Q ss_pred hhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 350 FCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 350 f~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
+.+.+.... -.-.++..+-|++.+.|..-.+..+-..|
T Consensus 170 L~~~a~~~~--l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 170 LQRNAYQRG--IELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 998885433 12234667888888888877666555444
No 22
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.64 E-value=1.2e-06 Score=100.72 Aligned_cols=244 Identities=14% Similarity=0.080 Sum_probs=129.9
Q ss_pred CCCCCCccccchhhhHHHhhhhc---cCCCceEEEEEccCCCchhHHHHHHHHHhhhc-----cc-c-eEEEeeeccccc
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAI---GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-----FE-G-KYFMANVREESE 247 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~-~-~~~v~~~~~~~~ 247 (709)
...|+.+.||++|+++|...|.. ++....++.|+|++|.|||+.++.+.+++... .+ . .+++. ....
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~L-- 827 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMNV-- 827 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCcc--
Confidence 45678999999999999998864 23334677899999999999999999876432 12 1 23333 2111
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCC--CChhHHHHHHHc---cCceEEEecCCCChh-----hhhhhhcCCCCCCCCeEE
Q 005191 248 KCGGLVHLRNQVLSKLLGENFDIGT--PKIPQYIRDRLQ---RMKVFIVLDDVNKYG-----QLEYFDGGLDRFGPGSRI 317 (709)
Q Consensus 248 ~~~~l~~l~~~ll~~l~~~~~~~~~--~~~~~~l~~~L~---~kr~LLVLDdv~~~~-----~~~~l~~~l~~~~~gsrI 317 (709)
.....+...+..++....+.... .+....+...+. +...+||||+++... .+-.|..... ..+++|
T Consensus 828 --stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKL 903 (1164)
T PTZ00112 828 --VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKL 903 (1164)
T ss_pred --CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeE
Confidence 33455666676777333222111 113333333332 234699999996432 1222222111 234444
Q ss_pred EE--EcCchhh--------hhhcCcceEEEecCCChHHHHHHhhhccccc-C-CCChhhHHHHHHHHHHhcCCchHHHHH
Q 005191 318 IV--TTRDKTI--------LERYGTHRIYEVEGLNCNEALRLFCSCAFKE-N-HCPEDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 318 Iv--TTR~~~v--------~~~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~-~-~~~~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
++ +|.+... ...++ ...+..+|++.++-.+++..++-.. . ..++..+-+++.++...|-.=.||.++
T Consensus 904 iLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDIL 982 (1164)
T PTZ00112 904 VLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQIC 982 (1164)
T ss_pred EEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 33 3432211 11122 2346779999999999999887422 1 122222223333333333444555554
Q ss_pred hhhhcCC-----ChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhccc
Q 005191 386 GSSFHRK-----SKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIAC 436 (709)
Q Consensus 386 a~~L~~~-----~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~ 436 (709)
-...... ..+....+.+++. ...+......||.+.|.+|..+..
T Consensus 983 RrAgEikegskVT~eHVrkAleeiE-------~srI~e~IktLPlHqKLVLlALIl 1031 (1164)
T PTZ00112 983 RKAFENKRGQKIVPRDITEATNQLF-------DSPLTNAINYLPWPFKMFLTCLIV 1031 (1164)
T ss_pred HHHHhhcCCCccCHHHHHHHHHHHH-------hhhHHHHHHcCCHHHHHHHHHHHH
Confidence 4333211 1222233332221 122444567899998887775443
No 23
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.57 E-value=8.7e-07 Score=89.82 Aligned_cols=176 Identities=17% Similarity=0.227 Sum_probs=103.2
Q ss_pred CCCccc--cchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 181 SDGLIG--LESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 181 ~~~~vG--R~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.+.|++ .+..++.+.+++.. ...+.+.|+|++|+|||+||+.++++........+++. ...... ....
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~-------~~~~ 83 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQ-------ADPE 83 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHH-------hHHH
Confidence 345553 33456677776542 34678899999999999999999987655444444544 111110 0001
Q ss_pred HHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh---h-hhhhhcCCCC-CCCCeEEEEEcCchh--------
Q 005191 259 VLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG---Q-LEYFDGGLDR-FGPGSRIIVTTRDKT-------- 325 (709)
Q Consensus 259 ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~---~-~~~l~~~l~~-~~~gsrIIvTTR~~~-------- 325 (709)
++ ..+.+ .-+|||||++... . .+.+...+.. ...+..+|+||+...
T Consensus 84 ~~--------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 84 VL--------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred HH--------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 11 11122 2489999996532 1 2333322211 123447888887532
Q ss_pred -hhhhcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 326 -ILERYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 326 -v~~~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
+...+.....+++++++.++...++...+-... ..-..+..+.|++.++|+|..+..+...+
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 111222235789999999999999876542221 12234567788888999998887765544
No 24
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=6e-06 Score=89.42 Aligned_cols=201 Identities=13% Similarity=0.078 Sum_probs=114.6
Q ss_pred CCCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc--cceEEEeeecccccccCCHHH
Q 005191 177 AISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF--EGKYFMANVREESEKCGGLVH 254 (709)
Q Consensus 177 ~~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~v~~~~~~~~~~~~l~~ 254 (709)
.|.....++|.+...+.|.+.+..+ .-...+.++|+.|+||+++|..+++.+-.+- .....-.... .... .+...
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~-~l~~-~~~c~ 90 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT-SLAI-DPDHP 90 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc-cccC-CCCCh
Confidence 4556678999999999999888754 2256788999999999999999998753211 1100000000 0000 00001
Q ss_pred HHHHHHHHhcCC------C-CCCC---CCC-hhHHHHH---HH-----ccCceEEEecCCCC--hhhhhhhhcCCCCCCC
Q 005191 255 LRNQVLSKLLGE------N-FDIG---TPK-IPQYIRD---RL-----QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGP 313 (709)
Q Consensus 255 l~~~ll~~l~~~------~-~~~~---~~~-~~~~l~~---~L-----~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~ 313 (709)
..+.+....... . .+.. ... .++.+++ .+ .+++-++|+|+++. ......++..+....+
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 111111110000 0 0000 011 2333433 32 24567999999964 4556666666654445
Q ss_pred CeEEEEEcCchh-hhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHh
Q 005191 314 GSRIIVTTRDKT-ILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLG 386 (709)
Q Consensus 314 gsrIIvTTR~~~-v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la 386 (709)
++.+|++|.+.. +.... +.-..+.+.+++.++..+++...... .+ .+....+++.++|.|+....+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 666777776653 33222 23468899999999999999876411 11 1223678999999998665543
No 25
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1e-05 Score=87.58 Aligned_cols=282 Identities=16% Similarity=0.138 Sum_probs=164.0
Q ss_pred CCCCCCCccccchhhhHHHhhhhc--cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccc--eEEEeeecccccccCCH
Q 005191 177 AISDSDGLIGLESHVEQVRSLLAI--GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEG--KYFMANVREESEKCGGL 252 (709)
Q Consensus 177 ~~~~~~~~vGR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~v~~~~~~~~~~~~l 252 (709)
+...|..+.+|+.+++++...|.. ....+.-+.|+|.+|+|||+.++.+.+++...... .+++. ... ....
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~~----~~t~ 86 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CLE----LRTP 86 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-eee----CCCH
Confidence 344566799999999999998864 22223448899999999999999999988776443 35555 222 2566
Q ss_pred HHHHHHHHHHhcC-CCCCCCCCChhHHHHHHHcc--CceEEEecCCCChh-----hhhhhhcCCCCCCCCeEE--EEEcC
Q 005191 253 VHLRNQVLSKLLG-ENFDIGTPKIPQYIRDRLQR--MKVFIVLDDVNKYG-----QLEYFDGGLDRFGPGSRI--IVTTR 322 (709)
Q Consensus 253 ~~l~~~ll~~l~~-~~~~~~~~~~~~~l~~~L~~--kr~LLVLDdv~~~~-----~~~~l~~~l~~~~~gsrI--IvTTR 322 (709)
..+...++.+++. ........+....+.+.+.. +.+++|||+++... .+-.+....... .++| |..+-
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n 164 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSN 164 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEec
Confidence 7888888888852 22223333366666666654 78999999996432 222333222221 3443 33443
Q ss_pred chhhhh--------hcCcceEEEecCCChHHHHHHhhhccc---ccCCCChhhHHHHHHHHHHhcC-CchHHHHHh--hh
Q 005191 323 DKTILE--------RYGTHRIYEVEGLNCNEALRLFCSCAF---KENHCPEDLLKHSETAAHYAKG-NPLALQVLG--SS 388 (709)
Q Consensus 323 ~~~v~~--------~~~~~~~~~L~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~Iv~~~gG-lPLAL~~la--~~ 388 (709)
+..... ..+. ..+..+|-+.+|-.+.+..++- ......+...+++..++...+| -=.||..+- +.
T Consensus 165 ~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~e 243 (366)
T COG1474 165 DDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGE 243 (366)
T ss_pred cHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 332222 2222 3478899999999999987762 3334444444555555555554 334444432 22
Q ss_pred hcCC------ChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhccccccCcch----hHHHHHHhcCCc---
Q 005191 389 FHRK------SKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIACFFNGDDR----EHVMWILNDDYY--- 455 (709)
Q Consensus 389 L~~~------~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp~~~~~----~~l~~l~~~~g~--- 455 (709)
+.++ +.+.-....... -..........||.+.|..+..++....++.. +....+....+.
T Consensus 244 iAe~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~ 316 (366)
T COG1474 244 IAEREGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQR 316 (366)
T ss_pred HHHhhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHH
Confidence 2221 111111111111 12334555788999888887766655333332 222333333333
Q ss_pred hHHHHHHHHHhCCCeEEe
Q 005191 456 SVQYGLNVLVNKSLIKIS 473 (709)
Q Consensus 456 ~~~~~l~~L~~rsLI~~~ 473 (709)
...+.+.+|...++|...
T Consensus 317 ~~~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 317 RFSDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHHHHhcCeEEee
Confidence 344678899999999865
No 26
>PF13173 AAA_14: AAA domain
Probab=98.49 E-value=8.3e-07 Score=81.60 Aligned_cols=120 Identities=21% Similarity=0.276 Sum_probs=77.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ 284 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 284 (709)
.+++.|.|+.|+|||||+++++++.. .-...+++. .... . ..... ..+..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~-------~-~~~~~------------~~~~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDP-------R-DRRLA------------DPDLLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCH-------H-HHHHh------------hhhhHHHHHHhhc
Confidence 36889999999999999999998765 223444554 1111 0 00000 0001223333333
Q ss_pred cCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchhhhhhc------CcceEEEecCCChHHH
Q 005191 285 RMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKTILERY------GTHRIYEVEGLNCNEA 346 (709)
Q Consensus 285 ~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~------~~~~~~~L~~L~~~ea 346 (709)
.++.+++||++.....|......+....++.+|++|+........- +....+++.||+..|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4788999999988888877776666555678999999887655321 2335789999998773
No 27
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=3.1e-06 Score=96.92 Aligned_cols=193 Identities=16% Similarity=0.128 Sum_probs=112.3
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
...+.+||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+++.+...-.. . ... .+.-...+.
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~----~-----~~P-CG~C~sCr~ 81 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGV----T-----SQP-CGVCRACRE 81 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCC----C-----CCC-CcccHHHHH
Confidence 445679999999999999987442 25677899999999999999999875321000 0 000 000011111
Q ss_pred HHHHhcCCCCCCC--CCChhHHHHHHH--------ccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCchh-
Q 005191 259 VLSKLLGENFDIG--TPKIPQYIRDRL--------QRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRDKT- 325 (709)
Q Consensus 259 ll~~l~~~~~~~~--~~~~~~~l~~~L--------~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~~~- 325 (709)
+...-......++ ....++.+++.+ .++.-++|||+++.. ..++.++..+.......++|+||.+..
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 1100000000000 000111121111 234558999999754 346777766665556788888887763
Q ss_pred hhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc-hHHHH
Q 005191 326 ILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP-LALQV 384 (709)
Q Consensus 326 v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP-LAL~~ 384 (709)
+... .+.-..+.+++++.++..+.+.+.+..... ....+....|++.++|.. -++..
T Consensus 162 Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred ccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2222 122367899999999999998877633221 223456788899998865 35544
No 28
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=5.1e-06 Score=90.46 Aligned_cols=193 Identities=16% Similarity=0.102 Sum_probs=111.1
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....++|-+.-++.+.+.+..+ .-.+.+.++|++|+||||+|+.+++.+....... ..+ .+.-.....
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---------~~p-c~~c~~c~~ 81 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---------SNP-CRKCIICKE 81 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---------CCC-CCCCHHHHH
Confidence 44567999999999999988743 2356789999999999999999998764211000 000 000000111
Q ss_pred HHHHhcCCCC--CC---CCCChhHHHHHHH-----ccCceEEEecCCCChh--hhhhhhcCCCCCCCCeEEEEEcCch-h
Q 005191 259 VLSKLLGENF--DI---GTPKIPQYIRDRL-----QRMKVFIVLDDVNKYG--QLEYFDGGLDRFGPGSRIIVTTRDK-T 325 (709)
Q Consensus 259 ll~~l~~~~~--~~---~~~~~~~~l~~~L-----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gsrIIvTTR~~-~ 325 (709)
+......... +. ...+....+.+.+ .+++-++|+|+++... .++.++..+.......++|++|.+. .
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 1110000000 00 0000111122221 2345699999997644 4666776666555677777776554 2
Q ss_pred hhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHH
Q 005191 326 ILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQV 384 (709)
Q Consensus 326 v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~ 384 (709)
+.... +....+++++++.++..+.+...+-... .....+.+..|++.++|.|-.+..
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 32221 2236889999999999998877653322 112235678899999998864433
No 29
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.47 E-value=3.8e-06 Score=90.57 Aligned_cols=199 Identities=15% Similarity=0.105 Sum_probs=107.8
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc-cc-eEEEeeecccccccCCHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF-EG-KYFMANVREESEKCGGLVHLR 256 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~-~~~v~~~~~~~~~~~~l~~l~ 256 (709)
.....++|++..++.|.+++..+ ..+.+.++|++|+||||+|+.+++.+.... .. ..++. ..+.... ....+.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~--~~~~~~ 86 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ--GKKYLV 86 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc--chhhhh
Confidence 34467899999999999988743 344678999999999999999998765332 22 22222 1111000 000000
Q ss_pred H--HHHHHhcCC-CCCCCCCChhHH-HHHHH-----ccCceEEEecCCCChh--hhhhhhcCCCCCCCCeEEEEEcCchh
Q 005191 257 N--QVLSKLLGE-NFDIGTPKIPQY-IRDRL-----QRMKVFIVLDDVNKYG--QLEYFDGGLDRFGPGSRIIVTTRDKT 325 (709)
Q Consensus 257 ~--~ll~~l~~~-~~~~~~~~~~~~-l~~~L-----~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gsrIIvTTR~~~ 325 (709)
. ......+.. .......+.... +.... ...+-+||+||++... ....+...+......+++|+||....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 0 000000000 000000111111 11111 1334589999996532 23334433333345567877775432
Q ss_pred -hhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHH
Q 005191 326 -ILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQV 384 (709)
Q Consensus 326 -v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~ 384 (709)
+.... +....+++.+++.++..+++...+..... .-..+.++.+++.++|++-.+..
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 22221 22357889999999999998876633221 12346688899999988765544
No 30
>PF14516 AAA_35: AAA-like domain
Probab=98.46 E-value=7e-05 Score=80.43 Aligned_cols=281 Identities=14% Similarity=0.103 Sum_probs=149.4
Q ss_pred CCCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccc-ccCCHHHH
Q 005191 177 AISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE-KCGGLVHL 255 (709)
Q Consensus 177 ~~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~-~~~~l~~l 255 (709)
.+.+++..|+|...-+++.+.+.. ....+.|.|+-.+|||+|...+.+.....--..+++. +..... ...+...+
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHH
Confidence 455667788998666666666652 2468999999999999999999988765422233443 333221 12344444
Q ss_pred HHHHHHH----hcCCCC-------CCCCC-ChhHHHHHHH---ccCceEEEecCCCChhh----hhhhhcCCC-C-----
Q 005191 256 RNQVLSK----LLGENF-------DIGTP-KIPQYIRDRL---QRMKVFIVLDDVNKYGQ----LEYFDGGLD-R----- 310 (709)
Q Consensus 256 ~~~ll~~----l~~~~~-------~~~~~-~~~~~l~~~L---~~kr~LLVLDdv~~~~~----~~~l~~~l~-~----- 310 (709)
.+.+... ++.... ..... .....+.+.+ .+++.+|+||+++..-. .+.+...+. +
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 4444444 322110 01111 1334444433 25899999999964221 122222111 0
Q ss_pred -CC--CCeEEEE-EcCchhhhhh-----cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchH
Q 005191 311 -FG--PGSRIIV-TTRDKTILER-----YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLA 381 (709)
Q Consensus 311 -~~--~gsrIIv-TTR~~~v~~~-----~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLA 381 (709)
.. ..-++++ .+........ ......++|++++.+|...|+.++-.. ......++|...+||+|..
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHH
Confidence 00 1122222 2211111111 123357899999999999998876421 1122389999999999999
Q ss_pred HHHHhhhhcCCChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhccccccCcc-hhHHHHHHhcCCc--hHH
Q 005191 382 LQVLGSSFHRKSKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIACFFNGDD-REHVMWILNDDYY--SVQ 458 (709)
Q Consensus 382 L~~la~~L~~~~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp~~~~-~~~l~~l~~~~g~--~~~ 458 (709)
+..++..+..... ..+.+++.-.... ... +++.+.++..+ ..... .+.+..++..... ...
T Consensus 236 v~~~~~~l~~~~~-~~~~l~~~a~~~~-~~~-----------~~hL~~l~~~L---~~~~~L~~~~~~il~~~~~~~~~~ 299 (331)
T PF14516_consen 236 VQKACYLLVEEQI-TLEQLLEEAITDN-GIY-----------NDHLDRLLDRL---QQNPELLEAYQQILFSGEPVDLDS 299 (331)
T ss_pred HHHHHHHHHHccC-cHHHHHHHHHHhc-ccH-----------HHHHHHHHHHH---ccCHHHHHHHHHHHhCCCCcccCh
Confidence 9999999966321 1222332211000 011 12333333333 11111 1222223322111 122
Q ss_pred HHHHHHHhCCCeEEeCCEEEEcHHH
Q 005191 459 YGLNVLVNKSLIKISYNKLQMHDLL 483 (709)
Q Consensus 459 ~~l~~L~~rsLI~~~~~~~~mHdlv 483 (709)
.....|...|||...++.+.+..-+
T Consensus 300 ~~~~~L~~~GLV~~~~~~~~~~n~i 324 (331)
T PF14516_consen 300 DDIYKLESLGLVKRDGNQLEVRNPI 324 (331)
T ss_pred HHHHHHHHCCeEEEeCCEEEEEcHH
Confidence 3577899999999998888775443
No 31
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.45 E-value=5e-06 Score=88.84 Aligned_cols=183 Identities=15% Similarity=0.181 Sum_probs=106.0
Q ss_pred CCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEEeeecccccccCCHHHHHHH
Q 005191 180 DSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.-..++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+... +.. .++. ... +.. .... ....
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~-~~~-~~~-~~~~-~~~~ 87 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLE-LNA-SDE-RGID-VIRN 87 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEE-ecc-ccc-cchH-HHHH
Confidence 3456899999999999988743 33457999999999999999999876432 221 1221 100 110 1111 1111
Q ss_pred HHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCch-hhhhh-cCcce
Q 005191 259 VLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRDK-TILER-YGTHR 334 (709)
Q Consensus 259 ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~~-~v~~~-~~~~~ 334 (709)
.+..+....+ . ....+-++++|+++.. ...+.+...+....+.+.+|+++... .+... .....
T Consensus 88 ~i~~~~~~~~-~------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 88 KIKEFARTAP-V------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHHhcCC-C------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 1111110000 0 0123558999998643 23344444444444556777766433 11111 11234
Q ss_pred EEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHH
Q 005191 335 IYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQV 384 (709)
Q Consensus 335 ~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~ 384 (709)
.+++++++.++....+...+..... .-..+.+..+++.++|.+--+..
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 6899999999999888877643221 12345688899999998866433
No 32
>PRK04195 replication factor C large subunit; Provisional
Probab=98.44 E-value=5.2e-06 Score=93.89 Aligned_cols=186 Identities=16% Similarity=0.113 Sum_probs=110.0
Q ss_pred CCCCCCccccchhhhHHHhhhhcc--CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIG--LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l 255 (709)
|.....++|.+..++.|.+|+..- ....+.+.|+|++|+||||+|..+++.+. ++. ...+.. + ......
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~--ielnas---d--~r~~~~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV--IELNAS---D--QRTADV 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE--EEEccc---c--cccHHH
Confidence 344567999999999999998742 12268899999999999999999999863 221 111111 1 111122
Q ss_pred HHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh------hhhhhhcCCCCCCCCeEEEEEcCchh-hhh
Q 005191 256 RNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG------QLEYFDGGLDRFGPGSRIIVTTRDKT-ILE 328 (709)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~------~~~~l~~~l~~~~~gsrIIvTTR~~~-v~~ 328 (709)
...++........ ....++-+||||+++... .+..+...+. ..+..||+|+.+.. ...
T Consensus 81 i~~~i~~~~~~~s-------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 81 IERVAGEAATSGS-------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHHHHHhhccCc-------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccch
Confidence 2233222211000 011357799999997532 2444444333 23345666664431 111
Q ss_pred -h-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 329 -R-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 329 -~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
. -.....+++++++.++....+...+...... ...+....|++.++|..-.+......+
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1233678999999999998887766332211 224668899999999776655433333
No 33
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=6.1e-06 Score=93.41 Aligned_cols=200 Identities=13% Similarity=0.094 Sum_probs=113.0
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
|.....+||-+.-++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+...-... .... .... .+......
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~--~~g~--~~~P-CG~C~sC~ 85 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADG--EGGI--TAQP-CGQCRACT 85 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccc--cccC--CCCC-CcccHHHH
Confidence 3445679999999999999987442 246778999999999999999998754210000 0000 0000 00001111
Q ss_pred HHHHHhcCCCCCCC--CCChhHHHHHHH--------ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCc-h
Q 005191 258 QVLSKLLGENFDIG--TPKIPQYIRDRL--------QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRD-K 324 (709)
Q Consensus 258 ~ll~~l~~~~~~~~--~~~~~~~l~~~L--------~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~-~ 324 (709)
.+...-......++ ....++.+++.+ .++.-++|||+++. ....+.|+..+..-..+..+|++|.+ .
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 11100000000000 000122222211 34566999999975 45677787777654556666555544 4
Q ss_pred hhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHH
Q 005191 325 TILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 325 ~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
.+.... +.-..+.++.++.++..+.+.+.+..... ....+....|++.++|.|.-...+
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 443322 12367899999999999988876532221 122345688899999998654433
No 34
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=7.7e-06 Score=92.19 Aligned_cols=189 Identities=14% Similarity=0.060 Sum_probs=111.9
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh--cccceEEEeeecccccccCCHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ--KFEGKYFMANVREESEKCGGLVHLR 256 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~v~~~~~~~~~~~~l~~l~ 256 (709)
..-..++|-+.-.+.|.+++..+. -.+.+.++|++|+||||+|+.+++.+.. .+...|+.+.. .
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s-------------c 76 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES-------------C 76 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh-------------h
Confidence 344668999988888888887542 2467799999999999999999987642 12223332210 0
Q ss_pred HHHHHHhcCCC-----CCCCCCChhHHHHHHH-----ccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 257 NQVLSKLLGEN-----FDIGTPKIPQYIRDRL-----QRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 257 ~~ll~~l~~~~-----~~~~~~~~~~~l~~~L-----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
..+........ ......+....+.+.+ .+++-++|||+++.. ..++.++..+....+.+.+|++|...
T Consensus 77 ~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~ 156 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEP 156 (504)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCCh
Confidence 00000000000 0000001122222222 235668999999753 45667776665544566666665443
Q ss_pred -hhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHH
Q 005191 325 -TILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQ 383 (709)
Q Consensus 325 -~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~ 383 (709)
.+.... +....+++.+++.++..+.+.+.+-.... ....+.+..|++.++|.+--+.
T Consensus 157 ~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi--~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 157 EKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR--EAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred hhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 332222 23468999999999999999887633221 1234568889999999986543
No 35
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.43 E-value=4.1e-07 Score=95.96 Aligned_cols=92 Identities=32% Similarity=0.529 Sum_probs=78.7
Q ss_pred CCCCcceEEecCCcccccCchHHHHHHHHHhCCCceEEcC-CCCCCCcccHHHHHHHHhccceeEEeccCcccc------
Q 005191 1 MASCKYDVFLSFRGEDTRDNFLSHLVVALQEKKIKTFIDE-ELTRGDQISPALVKAIEESMISVIIFSKNYASS------ 73 (709)
Q Consensus 1 ~~~~~ydvFiS~~~~D~~~~f~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S------ 73 (709)
|.+...||||||+.. +....++-|.-.|.-+|++||+|- .+..|. +.+.+.+.|..++..|.|+|||....
T Consensus 608 ~~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~n 685 (832)
T KOG3678|consen 608 MLSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDN 685 (832)
T ss_pred cccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence 456789999999875 456688888889999999999997 788887 56888899999999999999998654
Q ss_pred --hhhHHHHHHHHHhhhhCCceeEeEE
Q 005191 74 --KWCLDELVKILKCHKKNIQLVIPIF 98 (709)
Q Consensus 74 --~wc~~El~~~~~~~~~~~~~vlPvf 98 (709)
.|...|+.-+++|++. |||||
T Consensus 686 CeDWVHKEl~~Afe~~KN----IiPI~ 708 (832)
T KOG3678|consen 686 CEDWVHKELKCAFEHQKN----IIPIF 708 (832)
T ss_pred HHHHHHHHHHHHHHhcCC----eeeee
Confidence 6888899999888754 99998
No 36
>PTZ00202 tuzin; Provisional
Probab=98.40 E-value=1.2e-05 Score=86.34 Aligned_cols=166 Identities=15% Similarity=0.105 Sum_probs=101.4
Q ss_pred CCCCCCCCccccchhhhHHHhhhhccC-CCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHH
Q 005191 176 AAISDSDGLIGLESHVEQVRSLLAIGL-PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVH 254 (709)
Q Consensus 176 ~~~~~~~~~vGR~~el~~L~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~ 254 (709)
..|.++..|+||+.++..|...|...+ ...+++.|+|++|+|||||++.+..... ...++.+.. +..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr-------g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR-------GTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC-------CHHH
Confidence 457788999999999999999997533 3357999999999999999999987653 225554333 4577
Q ss_pred HHHHHHHHhcCCCCCCCCCChhHHHHHHH-----c-cCceEEEecCCCChhhhhhhh---cCCCCCCCCeEEEEEcCchh
Q 005191 255 LRNQVLSKLLGENFDIGTPKIPQYIRDRL-----Q-RMKVFIVLDDVNKYGQLEYFD---GGLDRFGPGSRIIVTTRDKT 325 (709)
Q Consensus 255 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~-~kr~LLVLDdv~~~~~~~~l~---~~l~~~~~gsrIIvTTR~~~ 325 (709)
+++.++..++.... ....++...|.+.+ . +++.+||+-=-+ -+.+.... -.+.....-|+|++---.+.
T Consensus 325 lLr~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lre-g~~l~rvyne~v~la~drr~ch~v~evples 402 (550)
T PTZ00202 325 TLRSVVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLRE-GSSLQRVYNEVVALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecC-CCcHHHHHHHHHHHHccchhheeeeeehHhh
Confidence 89999999975322 11122444444443 2 456666663221 11111111 01111134456666443332
Q ss_pred hhhh---cCcceEEEecCCChHHHHHHhhhcc
Q 005191 326 ILER---YGTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 326 v~~~---~~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
+-.. ...-..|-+++++.++|.+......
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1111 1122578899999999998876554
No 37
>PLN03025 replication factor C subunit; Provisional
Probab=98.39 E-value=7.5e-06 Score=87.61 Aligned_cols=184 Identities=15% Similarity=0.193 Sum_probs=105.2
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh-cccceEEEeeecccccccCCHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ-KFEGKYFMANVREESEKCGGLVHLR 256 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~v~~~~~~~~~~~~l~~l~ 256 (709)
|..-..++|.+..++.|..++..+ ..+.+.++|++|+||||+|..+++.+.. .|...+.-.+. ++. .+.. ..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~-~~~~-~v 81 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDD-RGID-VV 81 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---ccc-ccHH-HH
Confidence 344566899988888888877643 3445779999999999999999998633 23222111111 111 1111 22
Q ss_pred HHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh--hhhhhhcCCCCCCCCeEEEEEcCch-hhhhhc-Cc
Q 005191 257 NQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG--QLEYFDGGLDRFGPGSRIIVTTRDK-TILERY-GT 332 (709)
Q Consensus 257 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gsrIIvTTR~~-~v~~~~-~~ 332 (709)
+..+.......... -.++.-+++||+++... .-..+...+......+++|+++... .+.... +.
T Consensus 82 r~~i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 82 RNKIKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 22222211100000 01345699999997532 3344443333334566777766443 222211 12
Q ss_pred ceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 333 HRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 333 ~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
...+++++++.++..+.+...+-.... .-..+....|++.++|..-.+
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi--~i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKV--PYVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 257899999999999888877633221 122456788899998876443
No 38
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.38 E-value=2.9e-06 Score=83.85 Aligned_cols=181 Identities=20% Similarity=0.209 Sum_probs=99.9
Q ss_pred CCCCCCccccchhhhHHHhhhhc---cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAI---GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVH 254 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~ 254 (709)
|..-+.|||-+.-+..+.-++.. ..+....+.+||++|+||||||.-+++.....|. +.. . ...+. ..+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g-~~i~k---~~d 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-G-PAIEK---AGD 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-C-CC--S---CHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-c-hhhhh---HHH
Confidence 35568899999988887766653 2344678899999999999999999998776653 111 1 00010 111
Q ss_pred HHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCC--hhhhhhhhcCCCCC--------CC-----------
Q 005191 255 LRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNK--YGQLEYFDGGLDRF--------GP----------- 313 (709)
Q Consensus 255 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~--------~~----------- 313 (709)
+. .++.. + +++-+|++|.+.. ..+-+.+.+.+.++ ++
T Consensus 92 l~-~il~~--------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 92 LA-AILTN--------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp HH-HHHHT-----------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred HH-HHHHh--------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 11 11111 1 2355788899864 23333333332211 11
Q ss_pred CeEEEEEcCchhhhhhcC--cceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhc
Q 005191 314 GSRIIVTTRDKTILERYG--THRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFH 390 (709)
Q Consensus 314 gsrIIvTTR~~~v~~~~~--~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~ 390 (709)
-+-|=.|||...+...+. ..-+.++...+.+|-.+++.+.+.. ..-+-.++.+.+|++++.|-|--..-+-..++
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~--l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI--LNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC--TT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH--hCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 122445788765443332 2245689999999999999877732 22334457799999999999976665555544
No 39
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.37 E-value=5.9e-07 Score=87.77 Aligned_cols=50 Identities=24% Similarity=0.444 Sum_probs=35.8
Q ss_pred CccccchhhhHHHhhhhc-cCCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 183 GLIGLESHVEQVRSLLAI-GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.|+||+++++++...|.. .+...+.+.|+|++|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999952 33457999999999999999999999988776
No 40
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.7e-05 Score=90.16 Aligned_cols=192 Identities=16% Similarity=0.100 Sum_probs=112.0
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....+||.+...+.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+..... .. ... .+.-...+.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~-----~~p-Cg~C~sC~~ 80 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETG----VT-----STP-CEVCATCKA 80 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CC-----CCC-CccCHHHHH
Confidence 445679999999999999987542 2578899999999999999999987532110 00 000 000001111
Q ss_pred HHHHhcCCCC--CCCCCChhHHHHHHH--------ccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCchh-
Q 005191 259 VLSKLLGENF--DIGTPKIPQYIRDRL--------QRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRDKT- 325 (709)
Q Consensus 259 ll~~l~~~~~--~~~~~~~~~~l~~~L--------~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~~~- 325 (709)
+...-..... +.......+.+++.+ .++.-++|+|+++.. ...+.++..+.....+..+|++|.+..
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 1100000000 000000122222221 245668999999753 456667666655456677777776542
Q ss_pred hhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHH
Q 005191 326 ILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQ 383 (709)
Q Consensus 326 v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~ 383 (709)
+... .+....+++.+++.++..+.+.+.+-... .....+....|++.++|.+-.+.
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 2211 12336789999999999998887763322 12234567889999999875443
No 41
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.33 E-value=4.8e-06 Score=90.78 Aligned_cols=175 Identities=19% Similarity=0.270 Sum_probs=101.2
Q ss_pred CCCCCccccchhhhHHHhhhhcc-----------CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccc
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIG-----------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE 247 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~ 247 (709)
.....+.|+++.++++.+.+... -..++-+.|+|++|+|||++|+.+++.....| +...
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~v~----- 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVV----- 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Eecc-----
Confidence 34457899999999998876421 12256689999999999999999999865543 1100
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCCCChhH-HHHHHHccCceEEEecCCCChh----------------hhhhhhcCCCC
Q 005191 248 KCGGLVHLRNQVLSKLLGENFDIGTPKIPQ-YIRDRLQRMKVFIVLDDVNKYG----------------QLEYFDGGLDR 310 (709)
Q Consensus 248 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~kr~LLVLDdv~~~~----------------~~~~l~~~l~~ 310 (709)
...+....... ...... .+...-...+.+|+||+++... .+..++..+..
T Consensus 189 ----~~~l~~~~~g~---------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 189 ----GSELVRKYIGE---------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred ----hHHHHHHhhhH---------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 00111110000 000111 1122223467899999986421 12223322221
Q ss_pred C--CCCeEEEEEcCchhhhh-----hcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 311 F--GPGSRIIVTTRDKTILE-----RYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 311 ~--~~gsrIIvTTR~~~v~~-----~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
. ..+..||.||....... .......++++..+.++..++|..++.+...... .....+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 1 34677888887543221 1123567899999999999999887744332221 11466777777754
No 42
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.33 E-value=4.9e-06 Score=84.50 Aligned_cols=174 Identities=16% Similarity=0.205 Sum_probs=97.7
Q ss_pred CCCCcc-ccchhh-hHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 180 DSDGLI-GLESHV-EQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 180 ~~~~~v-GR~~el-~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
..++|+ |...+. ..+.++.. .....+.+.|+|++|+|||+||..+++.....-....++.. .. ...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~-~~----------~~~ 83 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA-AS----------PLL 83 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh-HH----------hHH
Confidence 344555 554443 33444333 22345678899999999999999999876443233344431 10 000
Q ss_pred HHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh--hhhhhhcCCCCC-CCCe-EEEEEcCchhhhh-----
Q 005191 258 QVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG--QLEYFDGGLDRF-GPGS-RIIVTTRDKTILE----- 328 (709)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~--~~~~l~~~l~~~-~~gs-rIIvTTR~~~v~~----- 328 (709)
.+ .. ....-+||+||++... ..+.+...+... ..+. .+|+|++......
T Consensus 84 ~~---------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 84 AF---------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred HH---------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH
Confidence 00 00 1123478999996432 222232222111 2333 3666666432111
Q ss_pred ---hcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 329 ---RYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 329 ---~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
.+.....+++++++.++-..++.+.+-... ..-.++..+.+++.+.|++..+..+...+
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222236889999999887777765432211 22234567888889999999888777665
No 43
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=6.8e-06 Score=88.50 Aligned_cols=197 Identities=13% Similarity=0.057 Sum_probs=115.1
Q ss_pred CCCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc----ccceEEEeeecccccccCCH
Q 005191 177 AISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK----FEGKYFMANVREESEKCGGL 252 (709)
Q Consensus 177 ~~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~v~~~~~~~~~~~~l 252 (709)
.|.....++|-+...+.+...+..+. ....+.|+|+.|+||||+|..+++.+-.. +...... .. .+-
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~-~~~ 88 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DP-DPA 88 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CC-CCC
Confidence 45667889999999999999887542 35678999999999999999999976442 1110000 00 001
Q ss_pred HHHHHHHHHHhc-------CC-CCCC---CC---CChhHHHHHHHc-----cCceEEEecCCCC--hhhhhhhhcCCCCC
Q 005191 253 VHLRNQVLSKLL-------GE-NFDI---GT---PKIPQYIRDRLQ-----RMKVFIVLDDVNK--YGQLEYFDGGLDRF 311 (709)
Q Consensus 253 ~~l~~~ll~~l~-------~~-~~~~---~~---~~~~~~l~~~L~-----~kr~LLVLDdv~~--~~~~~~l~~~l~~~ 311 (709)
....+.+..... .. .... .. .+.+..+.+.+. ++.-++|+|+++. ....+.++..+...
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 112222221100 00 0000 00 112223333332 4567999999974 44556666555543
Q ss_pred CCCeEEEEEc-Cchhhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHh
Q 005191 312 GPGSRIIVTT-RDKTILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLG 386 (709)
Q Consensus 312 ~~gsrIIvTT-R~~~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la 386 (709)
..+..+|++| +...+.... +.-..+++.+++.++..+++....... . ...+.+..+++.++|.|.....+.
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4455554444 433333222 123689999999999999998743111 1 223457789999999998665443
No 44
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.30 E-value=1.3e-05 Score=87.14 Aligned_cols=185 Identities=15% Similarity=0.102 Sum_probs=111.2
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc----c-----------------cceE
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK----F-----------------EGKY 237 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f-----------------~~~~ 237 (709)
..-..++|.+..++.+.+.+..+. -.+.+.++|++|+|||++|+.++..+... + ....
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 445678999999999999887432 24678899999999999999999875422 1 0011
Q ss_pred EEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh--hhhhhhhcCCCCCCCCe
Q 005191 238 FMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGS 315 (709)
Q Consensus 238 ~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gs 315 (709)
++... .. ... ...+++...+.... ..+++-++|+|+++.. ...+.++..+....+.+
T Consensus 90 ~~~~~----~~-~~~-~~~~~l~~~~~~~p---------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 90 EIDAA----SN-NGV-DDIREILDNVKYAP---------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred Eeecc----cc-CCH-HHHHHHHHHHhcCc---------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 11100 00 000 11112222211000 1234558999998654 44566666655444566
Q ss_pred EEEEEcCchh-hhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhh
Q 005191 316 RIIVTTRDKT-ILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGS 387 (709)
Q Consensus 316 rIIvTTR~~~-v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~ 387 (709)
.+|++|.+.. +.... .....+++++++.++..+++...+-.... ....+.+..+++.++|.|..+.....
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 7677765543 22222 22357889999999999988876632221 12246678899999999976655443
No 45
>PRK08727 hypothetical protein; Validated
Probab=98.30 E-value=8.6e-06 Score=83.00 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=96.8
Q ss_pred CCCccccchh-hhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHH
Q 005191 181 SDGLIGLESH-VEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQV 259 (709)
Q Consensus 181 ~~~~vGR~~e-l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~l 259 (709)
.++|++.... +..+..... + .....+.|+|.+|+|||.|+..+++....+.....|+. ..+ ....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~----------~~~~~ 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQA----------AAGRL 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH----------hhhhH
Confidence 4556665543 333333322 1 22356999999999999999999998766554555654 111 11111
Q ss_pred HHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh---hh-hhhhcCCCC-CCCCeEEEEEcCchh---------
Q 005191 260 LSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG---QL-EYFDGGLDR-FGPGSRIIVTTRDKT--------- 325 (709)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~---~~-~~l~~~l~~-~~~gsrIIvTTR~~~--------- 325 (709)
. ..+ +.+ .+.-+|||||++... .+ ..+...+.. ...+..||+||+...
T Consensus 85 ~----------------~~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 85 R----------------DAL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred H----------------HHH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 0 011 111 123489999996322 22 222222211 124667999998641
Q ss_pred hhhhcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 326 ILERYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 326 v~~~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
+...+.....+++++++.++-.+++.+++.... -.-..+....|++.++|-.-.+
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHHH
Confidence 112222345889999999999999998764322 1223456777888887665544
No 46
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.7e-05 Score=84.59 Aligned_cols=178 Identities=13% Similarity=0.161 Sum_probs=110.4
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh-----cccceEEEeeecccccccCCHHHHH
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ-----KFEGKYFMANVREESEKCGGLVHLR 256 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-----~f~~~~~v~~~~~~~~~~~~l~~l~ 256 (709)
..++|-+.-.+.+.+.+..+ .-.+...++|+.|+||||+|..+++.+.. .++....+.... ... ....+ .
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~--~~~-i~v~~-i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN--KKS-IGVDD-I 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc--CCC-CCHHH-H
Confidence 45788888888888888643 23578889999999999999999986522 122222222100 010 12222 2
Q ss_pred HHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCC--ChhhhhhhhcCCCCCCCCeEEEEEcCchhhh-hh-cCc
Q 005191 257 NQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVN--KYGQLEYFDGGLDRFGPGSRIIVTTRDKTIL-ER-YGT 332 (709)
Q Consensus 257 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~--~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~-~~-~~~ 332 (709)
+++...+.... ..+++-++|+|+++ +.+.++.++..+....+++.+|++|.+.... +. .+.
T Consensus 79 r~~~~~~~~~p---------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 79 RNIIEEVNKKP---------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHHHhcCc---------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 22222221111 12344567777764 5667888888887767788888888765322 21 123
Q ss_pred ceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHH
Q 005191 333 HRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 333 ~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
...+++.+++.++....+.+... .. ..+.++.++..++|.|.-+...
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~---~~---~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYN---DI---KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhc---CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 36889999999999888866541 11 1234678899999998755433
No 47
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.29 E-value=3.2e-06 Score=77.68 Aligned_cols=113 Identities=18% Similarity=0.273 Sum_probs=71.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc-----ccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCC-CCCCChhH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK-----FEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFD-IGTPKIPQ 277 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~-~~~~~~~~ 277 (709)
+.+.+.|+|++|+|||+++..+++..... -...+|+. . ... .....+...++..++..... ....+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-C---PSS-RTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-H---HHH-SSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-e---CCC-CCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 35789999999999999999999976543 23334554 2 222 46778899999988655444 22222557
Q ss_pred HHHHHHccCce-EEEecCCCCh---hhhhhhhcCCCCCCCCeEEEEEcCc
Q 005191 278 YIRDRLQRMKV-FIVLDDVNKY---GQLEYFDGGLDRFGPGSRIIVTTRD 323 (709)
Q Consensus 278 ~l~~~L~~kr~-LLVLDdv~~~---~~~~~l~~~l~~~~~gsrIIvTTR~ 323 (709)
.+.+.+...+. +||+|+++.. +.++.+..... ..+.++|+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77777776554 9999999654 33444433322 567778777765
No 48
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=6.2e-06 Score=76.43 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=69.1
Q ss_pred cccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhc
Q 005191 185 IGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLL 264 (709)
Q Consensus 185 vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~ 264 (709)
+|++..++.+...+... ..+.+.|+|++|+|||++++.+++.+.......+++. ....... ....... .. .
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~----~~~~~~~-~~-~ 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEG----LVVAELF-GH-F 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhh----hHHHHHh-hh-h
Confidence 47888888888887642 4568889999999999999999998753323333333 2211110 0000000 00 0
Q ss_pred CCCCCCCCCChhHHHHHHHccCceEEEecCCCCh-----hhhhhhhcCCCCC---CCCeEEEEEcCch
Q 005191 265 GENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY-----GQLEYFDGGLDRF---GPGSRIIVTTRDK 324 (709)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~-----~~~~~l~~~l~~~---~~gsrIIvTTR~~ 324 (709)
............++.++|+||++.. ..+..+....... ..+..+|+||...
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0001111222456789999999853 2233333333221 3577888888765
No 49
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=1.1e-05 Score=92.29 Aligned_cols=195 Identities=15% Similarity=0.116 Sum_probs=109.5
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
|.....+||.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+...-... +.. .+......
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~p---------Cg~C~sCr 80 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEP---------CGVCQSCT 80 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCC---------CcccHHHH
Confidence 3445679999999999999988532 256789999999999999999988653211000 000 00000000
Q ss_pred HHHHHhcCCCCCC--CCCChhHHHHHHH--------ccCceEEEecCCCChh--hhhhhhcCCCCCCCCeEEEEEcCch-
Q 005191 258 QVLSKLLGENFDI--GTPKIPQYIRDRL--------QRMKVFIVLDDVNKYG--QLEYFDGGLDRFGPGSRIIVTTRDK- 324 (709)
Q Consensus 258 ~ll~~l~~~~~~~--~~~~~~~~l~~~L--------~~kr~LLVLDdv~~~~--~~~~l~~~l~~~~~gsrIIvTTR~~- 324 (709)
.+...-......+ ......+.+++.+ .+++-++|||+++... ..+.++..+......+.+|++|.+.
T Consensus 81 ~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~ 160 (709)
T PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160 (709)
T ss_pred HHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 0000000000000 0000112222221 2456699999997543 3455555554434566677766544
Q ss_pred hhhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHH
Q 005191 325 TILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 325 ~v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
.+... .+.-..+.+.+++.++..+.+.+.+-... .....+.+..|++.++|.+.-+..+
T Consensus 161 kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg--i~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK--IAYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHhCCCHHHHHHH
Confidence 22221 11224678889999999998887763322 1223456789999999998554443
No 50
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.27 E-value=1.4e-05 Score=80.47 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=94.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccc--eEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEG--KYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRD 281 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 281 (709)
....+.|+|..|+|||.|.+++++.+....+. ++|+. ...+...+...+... ....+++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~~--------~~~~~~~ 93 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRDG--------EIEEFKD 93 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHTT--------SHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHcc--------cchhhhh
Confidence 34568899999999999999999988765443 33443 223444555544331 2344555
Q ss_pred HHccCceEEEecCCCChh---hhh-hhhcCCCC-CCCCeEEEEEcCch-h--------hhhhcCcceEEEecCCChHHHH
Q 005191 282 RLQRMKVFIVLDDVNKYG---QLE-YFDGGLDR-FGPGSRIIVTTRDK-T--------ILERYGTHRIYEVEGLNCNEAL 347 (709)
Q Consensus 282 ~L~~kr~LLVLDdv~~~~---~~~-~l~~~l~~-~~~gsrIIvTTR~~-~--------v~~~~~~~~~~~L~~L~~~ea~ 347 (709)
.++ .-=+|+|||++... .|+ .+...+.. ...|.++|+|++.. . +...+...-++++++++.++-.
T Consensus 94 ~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 94 RLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRR 172 (219)
T ss_dssp HHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHH
T ss_pred hhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHH
Confidence 555 34588999996432 222 22211111 13466899999554 2 1122334568999999999999
Q ss_pred HHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhh
Q 005191 348 RLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSS 388 (709)
Q Consensus 348 ~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~ 388 (709)
+++.+.+..... .-.+++++-|++.+.+..-.|..+-..
T Consensus 173 ~il~~~a~~~~~--~l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 173 RILQKKAKERGI--ELPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 999988743221 133466777777777666555544433
No 51
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.1e-05 Score=94.37 Aligned_cols=190 Identities=11% Similarity=0.036 Sum_probs=112.6
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhccc-c--eEEEeeecccccccCCHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE-G--KYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~--~~~v~~~~~~~~~~~~l~~l 255 (709)
.....+||-+..++.|.+++..+. =.+.+.++|+.|+||||+|+.+++.+..... . .|..+ ..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C-------------~s 78 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC-------------SS 78 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc-------------hH
Confidence 445679999999999999887432 2456789999999999999999997643210 0 00000 00
Q ss_pred HHHHHHHhc-----CCCCCCCCCChhHHHHHH-----HccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCc
Q 005191 256 RNQVLSKLL-----GENFDIGTPKIPQYIRDR-----LQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRD 323 (709)
Q Consensus 256 ~~~ll~~l~-----~~~~~~~~~~~~~~l~~~-----L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~ 323 (709)
...+..... .........+.++.+.+. ..++.-++|||+++. .+..+.|+..+.......++|++|.+
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 000000000 000000000011111111 135667999999964 45677777776655566777666655
Q ss_pred h-hhhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHH
Q 005191 324 K-TILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQV 384 (709)
Q Consensus 324 ~-~v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~ 384 (709)
. .+... ...-..|++++|+.++..+.+.+.+-... .....+.+..|++.++|.|--+..
T Consensus 159 ~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 159 PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4 33322 12236899999999999998887653221 122345678899999998864433
No 52
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2e-05 Score=87.07 Aligned_cols=191 Identities=14% Similarity=0.069 Sum_probs=110.5
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....++|-+.-+..|..++..+. -.+.+.++|+.|+||||+|+.+++.+........ ..... . .. ...
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~--~pCg~-C---~s----C~~ 83 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN--EPCNE-C---TS----CLE 83 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc--cccCC-C---cH----HHH
Confidence 445678999999999999887542 2456899999999999999999987543211000 00000 0 00 111
Q ss_pred HHHHhcCCCCCCC-----CCChhHHHHHH-----HccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCc-hh
Q 005191 259 VLSKLLGENFDIG-----TPKIPQYIRDR-----LQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRD-KT 325 (709)
Q Consensus 259 ll~~l~~~~~~~~-----~~~~~~~l~~~-----L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~-~~ 325 (709)
+...........+ ..+.+..+.+. ..++.-++|+|+++. .+.++.++..+........+|++|.+ ..
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~k 163 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhh
Confidence 1111100000000 01111222222 234567999999974 45677777776654455555555544 33
Q ss_pred hhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 326 ILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 326 v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
+.... +.-..|.+.+++.++..+.+.+.+-... -....+....|++.++|.+--.
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHHH
Confidence 33222 2235789999999999888877763322 1223456788999999998443
No 53
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=2.4e-05 Score=85.44 Aligned_cols=186 Identities=12% Similarity=0.062 Sum_probs=105.1
Q ss_pred CCccccchhhhHHHhhhhccCC--------CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHH
Q 005191 182 DGLIGLESHVEQVRSLLAIGLP--------DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLV 253 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~ 253 (709)
+.++|-+.-++.|.+.+..+.+ -.+.+.++|++|+|||++|..+++.+...... . .. .+.-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~-~~--------Cg~C 73 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--E-PG--------CGEC 73 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--C-CC--------CCCC
Confidence 4578888888888888875431 25778899999999999999998865332110 0 00 0000
Q ss_pred HHHHHHHHHhcCCCCCC--CCCC-hh---HHHHHHH-----ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEE
Q 005191 254 HLRNQVLSKLLGENFDI--GTPK-IP---QYIRDRL-----QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVT 320 (709)
Q Consensus 254 ~l~~~ll~~l~~~~~~~--~~~~-~~---~~l~~~L-----~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvT 320 (709)
...+.+.........-. .... .+ ..+.+.+ .+++-++|+|+++. ....+.++..+....++..+|++
T Consensus 74 ~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 74 RACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred HHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 00111100000000000 0000 11 1222222 23445888899975 33445566655544556666666
Q ss_pred cCch-hhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHH
Q 005191 321 TRDK-TILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 321 TR~~-~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
|.+. .+.+.. +.-..+.+++++.++..+.+.... + .+ .+.+..++..++|.|.....+
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 6554 333332 233688999999999998886432 1 11 345778899999999755444
No 54
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=5.6e-05 Score=86.69 Aligned_cols=199 Identities=13% Similarity=0.099 Sum_probs=112.0
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
...+.+||-+.-++.|.+++..+ .-.+.+.++|+.|+||||+|+.+++.+...-... . ........+.-...+.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~--~---~~~~~~pCg~C~~C~~ 86 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDG--Q---GGITATPCGVCQACRD 86 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCccc--c---cCCCCCCCCccHHHHH
Confidence 44577999888888899988754 2356788999999999999999988653210000 0 0000000111111222
Q ss_pred HHHHhcCCCCCCCC--CChhHHHHHHH--------ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCc-hh
Q 005191 259 VLSKLLGENFDIGT--PKIPQYIRDRL--------QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRD-KT 325 (709)
Q Consensus 259 ll~~l~~~~~~~~~--~~~~~~l~~~L--------~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~-~~ 325 (709)
+...-.......+. ....+.+++.+ .++.-++|||+++. .+..+.++..+........+|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 21100000000100 01222233322 13445899999975 44567777766654556666655544 33
Q ss_pred hhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHH
Q 005191 326 ILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 326 v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
+... .+....+++++++.++..+.+.+.+..... ....+.+..|++.++|.+--+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi--~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV--PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 223368899999999999988876633221 122356788899999987554433
No 55
>PRK05642 DNA replication initiation factor; Validated
Probab=98.19 E-value=2.2e-05 Score=80.04 Aligned_cols=154 Identities=18% Similarity=0.253 Sum_probs=91.3
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ 284 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 284 (709)
.+.+.|+|.+|+|||.|++.+++.+..+-..++|+. .. ++... ...+.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-----~~------~~~~~-----------------~~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-----LA------ELLDR-----------------GPELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-----HH------HHHhh-----------------hHHHHHhhh
Confidence 367899999999999999999987665444455655 11 11110 011222233
Q ss_pred cCceEEEecCCCCh---hhhhh-hhcCCCC-CCCCeEEEEEcCchhh---------hhhcCcceEEEecCCChHHHHHHh
Q 005191 285 RMKVFIVLDDVNKY---GQLEY-FDGGLDR-FGPGSRIIVTTRDKTI---------LERYGTHRIYEVEGLNCNEALRLF 350 (709)
Q Consensus 285 ~kr~LLVLDdv~~~---~~~~~-l~~~l~~-~~~gsrIIvTTR~~~v---------~~~~~~~~~~~L~~L~~~ea~~Lf 350 (709)
+-. +||+||+... ..|+. +...+.. ...|..+|+|++.... ...+....++++++++.++-.+++
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 6889999532 23322 3322221 1346678888875421 112223467899999999999998
Q ss_pred hhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 351 CSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
..++.... -.-.+++.+-|++.+.|..-.+..+-..|
T Consensus 176 ~~ka~~~~--~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 176 QLRASRRG--LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 86653321 11224667788888887766665554444
No 56
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=5.7e-05 Score=84.54 Aligned_cols=197 Identities=13% Similarity=0.079 Sum_probs=107.1
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
|.....++|.+.....|...+..+. -.+.+.++|++|+||||+|+.+++.+...-. .... + .+......
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~--~~~~-------p-c~~c~~c~ 78 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENR--KGVE-------P-CNECRACR 78 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccC--CCCC-------C-CcccHHHH
Confidence 3445679999888888888776432 2456889999999999999999987532100 0000 0 00000000
Q ss_pred HHHHHhcCCCCCC--C-C--CChhHHHHHH-----HccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCch-
Q 005191 258 QVLSKLLGENFDI--G-T--PKIPQYIRDR-----LQRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRDK- 324 (709)
Q Consensus 258 ~ll~~l~~~~~~~--~-~--~~~~~~l~~~-----L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~~- 324 (709)
.+........... . . .+....+.+. ..+++-++|+|+++.. +..+.++..+........+|++|.+.
T Consensus 79 ~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~ 158 (472)
T PRK14962 79 SIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLE 158 (472)
T ss_pred HHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChH
Confidence 0000000000000 0 0 0011112222 1245679999999643 34566666655434455555554443
Q ss_pred hhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCC-chHHHHHhh
Q 005191 325 TILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGN-PLALQVLGS 387 (709)
Q Consensus 325 ~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGl-PLAL~~la~ 387 (709)
.+.... .....+++.+++.++....+.+.+.... -.-..+....|++.++|. +.++..+-.
T Consensus 159 kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg--i~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 159 KVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG--IEIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 332222 2336889999999999888887763322 122345678888888655 566666554
No 57
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.18 E-value=1.5e-05 Score=93.36 Aligned_cols=173 Identities=16% Similarity=0.275 Sum_probs=100.2
Q ss_pred CCCCCccccchhhh---HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHH
Q 005191 179 SDSDGLIGLESHVE---QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 179 ~~~~~~vGR~~el~---~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l 255 (709)
...+.|+|.+..+. .+.+.+.. +....+.|+|++|+||||||+.+++.....|. .+. ... .++..+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln---a~~---~~i~di 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN---AVL---AGVKDL 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh---hhh---hhhHHH
Confidence 34466899988774 45566553 34566789999999999999999987654441 111 000 111111
Q ss_pred HHHHHHHhcCCCCCCCCCChhHHHHHHH--ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEE--cCchh--hh
Q 005191 256 RNQVLSKLLGENFDIGTPKIPQYIRDRL--QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVT--TRDKT--IL 327 (709)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L--~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvT--TR~~~--v~ 327 (709)
+..+ ....+.+ .+++.+|||||++. ..+.+.+.+.+. .+..++|+ |.++. +.
T Consensus 94 -r~~i----------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 94 -RAEV----------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred -HHHH----------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 1111 1111111 24567999999964 445566665443 35555553 44431 11
Q ss_pred hh-cCcceEEEecCCChHHHHHHhhhcccc-----cCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 328 ER-YGTHRIYEVEGLNCNEALRLFCSCAFK-----ENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 328 ~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~-----~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
.. .+...++.+++|+.++...++.+.+-. ......-..+..+.|++.+.|+.--+
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 11 112357899999999999998876531 01112233556788888888875433
No 58
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=5e-05 Score=85.43 Aligned_cols=193 Identities=18% Similarity=0.124 Sum_probs=110.9
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhccc--ce-EEEeeecccccccCCHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE--GK-YFMANVREESEKCGGLVH 254 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~-~~v~~~~~~~~~~~~l~~ 254 (709)
|.....++|-+.-+..|...+..+. -.+.+.++|++|+||||+|+.+++.+..... .. .+.. .+...
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~---------C~~C~ 86 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT---------CEQCT 86 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC---------CCCCh
Confidence 3445678999999999888776432 2467889999999999999999987532110 00 0000 00000
Q ss_pred HHHHHHHHhcCCCCCCC--CCChhHHHHHH--------HccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEE-Ec
Q 005191 255 LRNQVLSKLLGENFDIG--TPKIPQYIRDR--------LQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIV-TT 321 (709)
Q Consensus 255 l~~~ll~~l~~~~~~~~--~~~~~~~l~~~--------L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIv-TT 321 (709)
....+...........+ .......+++. +.+++-++|+|+++. ...++.++..+....+.+.+|+ ||
T Consensus 87 ~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 87 NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred HHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 11111100000000000 00011222221 134567899999975 4457777766665455666654 44
Q ss_pred Cchhhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 322 RDKTILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 322 R~~~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
+...+.... +....+++.+++.++..+.+...+-.... ....+.+..|++.++|.+--+
T Consensus 167 e~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL--KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred ChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 444444332 22357899999999999999887743221 122456778999999987544
No 59
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.18 E-value=2e-05 Score=87.90 Aligned_cols=167 Identities=14% Similarity=0.169 Sum_probs=100.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhccc--ceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFE--GKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDR 282 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 282 (709)
...+.|+|..|+|||.|++.+++.+....+ .++++. ...+...+...+.... +....+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh------hHHHHHHHH
Confidence 356889999999999999999997755332 223333 2234455554443210 122334444
Q ss_pred HccCceEEEecCCCChh----hhhhhhcCCCC-CCCCeEEEEEcCch-hh--------hhhcCcceEEEecCCChHHHHH
Q 005191 283 LQRMKVFIVLDDVNKYG----QLEYFDGGLDR-FGPGSRIIVTTRDK-TI--------LERYGTHRIYEVEGLNCNEALR 348 (709)
Q Consensus 283 L~~kr~LLVLDdv~~~~----~~~~l~~~l~~-~~~gsrIIvTTR~~-~v--------~~~~~~~~~~~L~~L~~~ea~~ 348 (709)
+. ..-+|||||+.... ..+.+...+.. ...|..||+|+... .. ...+...-++.+++++.++-.+
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 44 34588999995321 12233222221 13455788887543 22 2223344578899999999999
Q ss_pred HhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 349 LFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 349 Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
++.+.+-.......-.++...-|++.++|.|-.+.-+...+
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99888733221113445778899999999998877665444
No 60
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.5e-05 Score=88.30 Aligned_cols=182 Identities=17% Similarity=0.125 Sum_probs=108.8
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc---------------------cceE
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF---------------------EGKY 237 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~~ 237 (709)
.....++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+.... ....
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 44567999999999999988743 2346688999999999999999998653211 1111
Q ss_pred EEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHH-HHccCceEEEecCCCC--hhhhhhhhcCCCCCCCC
Q 005191 238 FMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRD-RLQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPG 314 (709)
Q Consensus 238 ~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~-~L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~g 314 (709)
.+. . ... .+... .+.++.. +.. -..+++-++|+|+++. ....+.++..+......
T Consensus 92 eid-a---as~-~gvd~-ir~ii~~----------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 92 EID-A---ASR-TGVEE-TKEILDN----------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred Eee-c---ccc-cCHHH-HHHHHHH----------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 111 0 000 11111 1111111 110 0234567999999974 44566777666654556
Q ss_pred eEEEEEcCc-hhhhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCch-HHHHH
Q 005191 315 SRIIVTTRD-KTILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPL-ALQVL 385 (709)
Q Consensus 315 srIIvTTR~-~~v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPL-AL~~l 385 (709)
+.+|++|.+ ..+... .+....+++.+++.++..+.+.+.+-... .....+....|++.++|.+- |+..+
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666654443 333322 22346889999999998888876552221 12234557788999999774 44443
No 61
>PRK09087 hypothetical protein; Validated
Probab=98.16 E-value=2.3e-05 Score=79.32 Aligned_cols=143 Identities=11% Similarity=0.062 Sum_probs=87.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ 284 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 284 (709)
.+.+.|+|++|+|||+|++.++.... ..|+.. ..+...+...+ .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~~~--------------------~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAANAA--------------------A 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHHhh--------------------h
Confidence 46789999999999999998887532 224431 01111111111 1
Q ss_pred cCceEEEecCCCCh----hhhhhhhcCCCCCCCCeEEEEEcCch---------hhhhhcCcceEEEecCCChHHHHHHhh
Q 005191 285 RMKVFIVLDDVNKY----GQLEYFDGGLDRFGPGSRIIVTTRDK---------TILERYGTHRIYEVEGLNCNEALRLFC 351 (709)
Q Consensus 285 ~kr~LLVLDdv~~~----~~~~~l~~~l~~~~~gsrIIvTTR~~---------~v~~~~~~~~~~~L~~L~~~ea~~Lf~ 351 (709)
+ -+|++||++.. +.+-.+...+. ..|..+|+|++.. .....+....++++++++.++-.+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 1 27888999532 22222222222 3466788888743 233334455789999999999999998
Q ss_pred hcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 352 SCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
+.+-... -.-.+++.+-|++.+.|..-++..+...|
T Consensus 164 ~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 164 KLFADRQ--LYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8873321 12335677888888888877776544443
No 62
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=2e-05 Score=90.61 Aligned_cols=194 Identities=13% Similarity=0.102 Sum_probs=112.5
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....+||-+.-++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+..... .. ... .+.....+.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~~-----~~p-Cg~C~~C~~ 81 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETG----IT-----ATP-CGECDNCRE 81 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccC----CC-----CCC-CCCCHHHHH
Confidence 455779999999999999887542 2466789999999999999999987543210 00 000 111111112
Q ss_pred HHHHhcCCCC--CCC---CCChhHHHHHH-----HccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch-h
Q 005191 259 VLSKLLGENF--DIG---TPKIPQYIRDR-----LQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK-T 325 (709)
Q Consensus 259 ll~~l~~~~~--~~~---~~~~~~~l~~~-----L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~-~ 325 (709)
+...-..... +.. ..+....+.+. ..++.-++|||+++. ....+.++..+.......++|++|.+. .
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 1110000000 000 00111112222 234567999999974 446677776666545566666655554 3
Q ss_pred hhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHH
Q 005191 326 ILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 326 v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
+... .+....|++.+|+.++..+.+.+.+-... .....+....|++.++|.+--+..+
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 22236899999999999998877652221 1123355778999999988644443
No 63
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=6.2e-05 Score=84.02 Aligned_cols=191 Identities=17% Similarity=0.169 Sum_probs=109.9
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....+||-+.-++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+....... ..+ .+.-.....
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~---------~~p-Cg~C~~C~~ 78 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPT---------SDP-CGTCHNCIS 78 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCC---------CCC-ccccHHHHH
Confidence 445679999999998888887442 246889999999999999999988542211100 000 001111111
Q ss_pred HHHHhcCCCCCCCC--CChhHHHHHH---H-----ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCc-hh
Q 005191 259 VLSKLLGENFDIGT--PKIPQYIRDR---L-----QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRD-KT 325 (709)
Q Consensus 259 ll~~l~~~~~~~~~--~~~~~~l~~~---L-----~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~-~~ 325 (709)
+..........++. ....+.+++. . .++.-++|+|+++. .+..+.++..+....+.+.+|++|.+ ..
T Consensus 79 i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 79 IKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred HhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 11111000000000 0011112211 1 23556899999964 34566677666655567777666643 33
Q ss_pred hhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 326 ILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 326 v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
+.... +....+++.+++.++..+.+.+.+..... ....+.+..|++.++|.+-.+
T Consensus 159 l~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 159 IPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 33322 23367899999999999998887643221 223456788999999987644
No 64
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=3.3e-05 Score=78.87 Aligned_cols=155 Identities=13% Similarity=0.173 Sum_probs=90.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
..+.+.|+|++|+|||+|+..+++....+-....|+. +... ..... .+.+.+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~-------~~~~~--------------------~~~~~~ 95 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR-------AWFVP--------------------EVLEGM 95 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH-------hhhhH--------------------HHHHHh
Confidence 3467899999999999999999997665433444554 1110 00000 111111
Q ss_pred ccCceEEEecCCCCh---hhhhh-hhcCCCC-CCCC-eEEEEEcCchh---------hhhhcCcceEEEecCCChHHHHH
Q 005191 284 QRMKVFIVLDDVNKY---GQLEY-FDGGLDR-FGPG-SRIIVTTRDKT---------ILERYGTHRIYEVEGLNCNEALR 348 (709)
Q Consensus 284 ~~kr~LLVLDdv~~~---~~~~~-l~~~l~~-~~~g-srIIvTTR~~~---------v~~~~~~~~~~~L~~L~~~ea~~ 348 (709)
.+ --+|+|||+... ..|+. +...+.. ...| .++|+||+... +...+....++++++++.++-.+
T Consensus 96 ~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~ 174 (235)
T PRK08084 96 EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQ 174 (235)
T ss_pred hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHH
Confidence 11 238999999542 23322 1111111 0123 47899997652 22233445789999999999999
Q ss_pred HhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 349 LFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 349 Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
++.+.+.... -.-.++...-|++.+.|..-.+..+-..+
T Consensus 175 ~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 175 ALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 9877663221 22335667888888888776665554443
No 65
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.14 E-value=7.2e-05 Score=73.56 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=93.0
Q ss_pred HHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc---------------------ccceEEEeeecccccccCCH
Q 005191 194 VRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK---------------------FEGKYFMANVREESEKCGGL 252 (709)
Q Consensus 194 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~v~~~~~~~~~~~~l 252 (709)
|.+.+..+ .-.+.+.++|+.|+|||++|+.+.+.+... ++...++.... .. ...
T Consensus 4 l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~-~~~ 78 (188)
T TIGR00678 4 LKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS-IKV 78 (188)
T ss_pred HHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc-CCH
Confidence 44444422 124788999999999999999999876432 11111211000 00 111
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch-hhhhh
Q 005191 253 VHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK-TILER 329 (709)
Q Consensus 253 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~-~v~~~ 329 (709)
+..+++...+.... ..+.+-++|+||++. .+..+.++..+....+.+.+|++|++. .+...
T Consensus 79 -~~i~~i~~~~~~~~---------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 79 -DQVRELVEFLSRTP---------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPT 142 (188)
T ss_pred -HHHHHHHHHHccCc---------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHH
Confidence 11111121111000 123566899999965 334666666666555667777777654 22222
Q ss_pred c-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCch
Q 005191 330 Y-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPL 380 (709)
Q Consensus 330 ~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPL 380 (709)
. .....+++.+++.++..+.+.+. + . ..+.+..|++.++|.|.
T Consensus 143 i~sr~~~~~~~~~~~~~~~~~l~~~--g---i---~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 143 IRSRCQVLPFPPLSEEALLQWLIRQ--G---I---SEEAAELLLALAGGSPG 186 (188)
T ss_pred HHhhcEEeeCCCCCHHHHHHHHHHc--C---C---CHHHHHHHHHHcCCCcc
Confidence 1 23368999999999999998776 1 1 13568899999999985
No 66
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.14 E-value=3.3e-05 Score=80.14 Aligned_cols=173 Identities=18% Similarity=0.254 Sum_probs=100.1
Q ss_pred CCCccccchhhhH---HHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 181 SDGLIGLESHVEQ---VRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 181 ~~~~vGR~~el~~---L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
-...||-+..+.+ |.+++. .+....+.+||++|+||||||+.++..-+.+- ..|+. +........+...+++
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-lSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-LSATNAKTNDVRDIFE 211 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-EeccccchHHHHHHHH
Confidence 3445665544432 223333 34677888999999999999999998654432 34444 2222222123333322
Q ss_pred HHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCC--ChhhhhhhhcCCCCCCCCeEEEE--EcCchhhhh---hc
Q 005191 258 QVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVN--KYGQLEYFDGGLDRFGPGSRIIV--TTRDKTILE---RY 330 (709)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~--~~~~~~~l~~~l~~~~~gsrIIv--TTR~~~v~~---~~ 330 (709)
+ .. =...+.++|.+|++|.|. +..|-+.+++.. .+|.-++| ||-++...- ..
T Consensus 212 ~----aq--------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 212 Q----AQ--------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred H----HH--------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHH
Confidence 2 11 112356789999999995 455666666654 45665555 676663211 12
Q ss_pred CcceEEEecCCChHHHHHHhhhccc---ccC-----CCC---hhhHHHHHHHHHHhcCCc
Q 005191 331 GTHRIYEVEGLNCNEALRLFCSCAF---KEN-----HCP---EDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 331 ~~~~~~~L~~L~~~ea~~Lf~~~a~---~~~-----~~~---~~~~~~~~~Iv~~~gGlP 379 (709)
..-.++.|++|+.++...++.+-.- ... -+. .....+.+-++..|.|-.
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 2336889999999999888876321 111 111 123445666777777754
No 67
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=7.3e-05 Score=84.82 Aligned_cols=192 Identities=16% Similarity=0.053 Sum_probs=107.8
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
|.....++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.+...- |.. .. . .+-....+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~~-~----Cg~C~sCr 80 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-GD-C----CNSCSVCE 80 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-CC-C----CcccHHHH
Confidence 3455779999999999999886432 247788999999999999999998763211 100 00 0 00011111
Q ss_pred HHHHHhcCCCCCCCC--CChhHHHH---HHH-----ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch-
Q 005191 258 QVLSKLLGENFDIGT--PKIPQYIR---DRL-----QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK- 324 (709)
Q Consensus 258 ~ll~~l~~~~~~~~~--~~~~~~l~---~~L-----~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~- 324 (709)
.+...........+. ....+.++ +.+ ..++-++|+|+++. .+....++..+......+.+|++|...
T Consensus 81 ~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 111111000000000 00112222 111 12344799999965 345566666554434556666555433
Q ss_pred hhhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 325 TILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 325 ~v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
.+... .+....+++.+++.++....+...+-.... ....+.+..+++.++|.+--+
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLRDG 217 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHH
Confidence 33322 223357899999999999888876633221 122355788999999977533
No 68
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=5.9e-05 Score=85.33 Aligned_cols=183 Identities=14% Similarity=0.072 Sum_probs=108.0
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc---------------------ccce
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK---------------------FEGK 236 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~ 236 (709)
|.....+||-+.-++.|.+++..+. -.+.+.++|++|+||||+|+.+++.+... ++..
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 3445679999999999999997442 24677899999999999999999865321 1111
Q ss_pred EEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCC--hhhhhhhhcCCCCCCCC
Q 005191 237 YFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPG 314 (709)
Q Consensus 237 ~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~g 314 (709)
..+... .. .++..+ ++++..+... -..++.-++|+|+++. .+..+.++..+....+.
T Consensus 91 ~eidaa----s~-~~v~~i-R~l~~~~~~~---------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVDAA----SR-TKVEDT-RELLDNIPYA---------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEccc----cc-CCHHHH-HHHHHHHhhc---------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 111100 00 111111 1121111100 0123456899999975 44566666666554566
Q ss_pred eEEEEEcCch-hhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHH
Q 005191 315 SRIIVTTRDK-TILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQV 384 (709)
Q Consensus 315 srIIvTTR~~-~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~ 384 (709)
+++|++|.+. .+.... +....+++++++.++..+.+...+-.... ....+....|++.++|.+.-+..
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi--~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV--EFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHH
Confidence 7777665443 332221 12356889999999888776665532221 12234577888999998854443
No 69
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=6.6e-05 Score=86.23 Aligned_cols=201 Identities=15% Similarity=0.129 Sum_probs=114.8
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
|.....++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+.......- ....... .+.-.-.+
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~~~~~~~-cg~c~~C~ 93 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGD----GGPTIDL-CGVGEHCQ 93 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----CCCcccc-CcccHHHH
Confidence 3456789999999999999987542 2567889999999999999999997643221000 0000000 01111111
Q ss_pred HHHHHhcCCCCCCC--CCChhHHHHH---HH-----ccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEc-Cch
Q 005191 258 QVLSKLLGENFDIG--TPKIPQYIRD---RL-----QRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTT-RDK 324 (709)
Q Consensus 258 ~ll~~l~~~~~~~~--~~~~~~~l~~---~L-----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTT-R~~ 324 (709)
.+............ ....++.+++ .+ ..++-++|+|+++.. ...+.|+..+....+.+.+|++| ...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 12111110000000 0001222222 22 234558999999653 45666766665545667766555 433
Q ss_pred hhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHh
Q 005191 325 TILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLG 386 (709)
Q Consensus 325 ~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la 386 (709)
.+.... +....+++.+++.++....+.+.+-... .....+.+..|++.++|.+.-+....
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg--i~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG--VEVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333322 2236789999999999999887763222 11223567889999999986655443
No 70
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.08 E-value=2.3e-05 Score=86.10 Aligned_cols=173 Identities=23% Similarity=0.330 Sum_probs=98.4
Q ss_pred CCCCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccc
Q 005191 180 DSDGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEK 248 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~ 248 (709)
....+.|++..++++.+.+.. +-..++-|.|+|++|+|||++|+.++++.... |+... .
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-----~i~v~----~- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-----FIRVV----G- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-----EEEee----h-
Confidence 345788999999999887632 11235678999999999999999999976433 22200 0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCCCChhHH-HHHHHccCceEEEecCCCChh------------h----hhhhhcCCCCC
Q 005191 249 CGGLVHLRNQVLSKLLGENFDIGTPKIPQY-IRDRLQRMKVFIVLDDVNKYG------------Q----LEYFDGGLDRF 311 (709)
Q Consensus 249 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~-l~~~L~~kr~LLVLDdv~~~~------------~----~~~l~~~l~~~ 311 (709)
..+ .....+. ....... +...-...+.+|+||+++... . +..++..+...
T Consensus 199 ----~~l----~~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 199 ----SEL----VQKFIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred ----HHH----hHhhccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 011 1111000 0011111 222223467899999996431 1 12222222211
Q ss_pred --CCCeEEEEEcCchhhhhh-c----CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCC
Q 005191 312 --GPGSRIIVTTRDKTILER-Y----GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGN 378 (709)
Q Consensus 312 --~~gsrIIvTTR~~~v~~~-~----~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGl 378 (709)
..+..||.||........ . ..+..+++++.+.++-.++|..+..+...... .....+++.+.|.
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~ 336 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGA 336 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCC
Confidence 235677878865432221 1 23467899999999999999887643222211 1145666777664
No 71
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.08 E-value=0.00019 Score=80.52 Aligned_cols=178 Identities=16% Similarity=0.142 Sum_probs=103.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccc--eEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEG--KYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDR 282 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 282 (709)
...+.|+|++|+|||+|++.+++.+..+++. ..|+. ...+...+...+... ....+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~~ 208 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRNN--------TMEEFKEK 208 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHcC--------cHHHHHHH
Confidence 4678999999999999999999998776533 23333 112333333333211 12334444
Q ss_pred HccCceEEEecCCCChh----hhhhhhcCCCC-CCCCeEEEEEcCchh-h--------hhhcCcceEEEecCCChHHHHH
Q 005191 283 LQRMKVFIVLDDVNKYG----QLEYFDGGLDR-FGPGSRIIVTTRDKT-I--------LERYGTHRIYEVEGLNCNEALR 348 (709)
Q Consensus 283 L~~kr~LLVLDdv~~~~----~~~~l~~~l~~-~~~gsrIIvTTR~~~-v--------~~~~~~~~~~~L~~L~~~ea~~ 348 (709)
++ +.-+|+|||++... ..+.+...+.. ...|..+|+||.... . ...+....++++++++.++-.+
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 44 35589999995321 11222221111 123455777776531 1 2223334678999999999999
Q ss_pred HhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhc------CC--ChhhHHHHHHHh
Q 005191 349 LFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFH------RK--SKPDWVNTLNNL 404 (709)
Q Consensus 349 Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~------~~--~~~ew~~~L~~L 404 (709)
++.+.+-... ....+++.+.|++.+.|..-.+.-+-..|. ++ +.+..+..+..+
T Consensus 288 il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 288 ILKKKAEEEG--IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 9998874321 223346788888888888765544333221 22 445566666654
No 72
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.06 E-value=7.5e-05 Score=83.24 Aligned_cols=161 Identities=14% Similarity=0.130 Sum_probs=95.0
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccc--eEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEG--KYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDR 282 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 282 (709)
...+.|+|++|+|||+|+..+++.+...++. +.|+. ...+...+...+... ....+++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~--------~~~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG--------KLNEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhcc--------cHHHHHHH
Confidence 4568999999999999999999987765432 33443 123444444444221 12234444
Q ss_pred HccCceEEEecCCCCh---hhh-hhhhcCCCC-CCCCeEEEEEcC-chhhhh--------hcCcceEEEecCCChHHHHH
Q 005191 283 LQRMKVFIVLDDVNKY---GQL-EYFDGGLDR-FGPGSRIIVTTR-DKTILE--------RYGTHRIYEVEGLNCNEALR 348 (709)
Q Consensus 283 L~~kr~LLVLDdv~~~---~~~-~~l~~~l~~-~~~gsrIIvTTR-~~~v~~--------~~~~~~~~~L~~L~~~ea~~ 348 (709)
...+.-+|++||+... ... +.+...+.. ...|..||+||. .+.-.. .+....++++++.+.+.-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 4445668999999632 111 222221110 123457888874 332221 22234578999999999999
Q ss_pred HhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHh
Q 005191 349 LFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLG 386 (709)
Q Consensus 349 Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la 386 (709)
++.+.+-... -.-..++...|++.+.|+--.+.-+-
T Consensus 271 IL~~~~~~~~--~~l~~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 271 IARKMLEIEH--GELPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred HHHHHHHhcC--CCCCHHHHHHHHhccccCHHHHHHHH
Confidence 9988763221 11234667888888888765554443
No 73
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=8.2e-05 Score=86.02 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=112.9
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....++|-+.-++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+.......- ... .+.....+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--------~~~-c~~c~~c~~ 82 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--------GRP-CGTCEMCRA 82 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--------CCC-CccCHHHHH
Confidence 445679999999999988887442 2467789999999999999999987632110000 000 111112222
Q ss_pred HHHHhcCCCCCCC-----CCChhHHHHHHH-----ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch-h
Q 005191 259 VLSKLLGENFDIG-----TPKIPQYIRDRL-----QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK-T 325 (709)
Q Consensus 259 ll~~l~~~~~~~~-----~~~~~~~l~~~L-----~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~-~ 325 (709)
+............ ..+....+.+.+ ..++-++|+|+++. .+..+.|+..+......+.+|++|.+. .
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 2211111000000 001111222222 23456899999964 345666666555444566666665443 3
Q ss_pred hhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhh
Q 005191 326 ILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSS 388 (709)
Q Consensus 326 v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~ 388 (709)
+.... +....+++.+++..+....+...+..... ....+.+..|++.++|.+..+......
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl--~i~~eal~~La~~s~Gdlr~al~~Lek 224 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI--NLEPGALEAIARAATGSMRDAENLLQQ 224 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33221 22357889999999988888776633221 122356789999999999766554443
No 74
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.04 E-value=7.1e-05 Score=89.74 Aligned_cols=177 Identities=14% Similarity=0.117 Sum_probs=98.6
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc------cceEEEeeecccccc---c
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF------EGKYFMANVREESEK---C 249 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~v~~~~~~~~~---~ 249 (709)
..-+.++||+.++..+...|... ...-+.++|++|+||||||+.+++++.... ...+|...+...... .
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ 261 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVK 261 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccc
Confidence 44568999999999999988754 233556999999999999999999875431 122332222111000 0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH-ccCceEEEecCCCChh-------hhh---hhhcCCCCCCCCeEEE
Q 005191 250 GGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL-QRMKVFIVLDDVNKYG-------QLE---YFDGGLDRFGPGSRII 318 (709)
Q Consensus 250 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LLVLDdv~~~~-------~~~---~l~~~l~~~~~gsrII 318 (709)
..+..- +...+.+.- .+++++|++|++.... +.+ .+.+.+. ....++|
T Consensus 262 ge~e~~-------------------lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~I 320 (852)
T TIGR03345 262 GEFENR-------------------LKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTI 320 (852)
T ss_pred hHHHHH-------------------HHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEE
Confidence 001111 111122111 1468999999995421 111 2444433 2345666
Q ss_pred EEcCchhhhhh-------cCcceEEEecCCChHHHHHHhhhcccc--cCCCChhhHHHHHHHHHHhcCC
Q 005191 319 VTTRDKTILER-------YGTHRIYEVEGLNCNEALRLFCSCAFK--ENHCPEDLLKHSETAAHYAKGN 378 (709)
Q Consensus 319 vTTR~~~v~~~-------~~~~~~~~L~~L~~~ea~~Lf~~~a~~--~~~~~~~~~~~~~~Iv~~~gGl 378 (709)
-||...+.... .....++.+++++.++..+++....-. ....-....+....+++.+.+.
T Consensus 321 gaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred EecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 66665432111 112368999999999999997543311 1111112344556666666554
No 75
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=5.9e-05 Score=85.82 Aligned_cols=191 Identities=15% Similarity=0.091 Sum_probs=106.6
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....++|-+.-++.|.+++..+. -.+.+.++|++|+||||+|+.+++.+...... . ... .+.-.....
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~----~-----~~p-cg~C~~C~~ 81 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGV----T-----ATP-CGVCSACLE 81 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCC----C-----CCC-CCCCHHHHH
Confidence 445678999999999999887432 24667899999999999999999875321100 0 000 000000000
Q ss_pred HHHHhcCCC--CCCCCCChhHHHH---HHH-----ccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCch-h
Q 005191 259 VLSKLLGEN--FDIGTPKIPQYIR---DRL-----QRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRDK-T 325 (709)
Q Consensus 259 ll~~l~~~~--~~~~~~~~~~~l~---~~L-----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~~-~ 325 (709)
+...-.... .+.......+.++ +.. .+++-++|+|+++.. +..+.++..+......+.+|++|.+. .
T Consensus 82 i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~k 161 (527)
T PRK14969 82 IDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQK 161 (527)
T ss_pred HhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhh
Confidence 000000000 0000000111222 111 245669999999754 34666666665545566666655443 2
Q ss_pred hhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 326 ILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 326 v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
+... .+....+++++++.++..+.+.+.+-... -....+.+..|++.++|.+--+
T Consensus 162 il~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg--i~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 162 IPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN--IPFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred CchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 2221 11235789999999999988876653222 1123355688899999987533
No 76
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.02 E-value=6.3e-05 Score=89.36 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=87.9
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc-----c-cceEEEeeecccccccCCH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-----F-EGKYFMANVREESEKCGGL 252 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f-~~~~~v~~~~~~~~~~~~l 252 (709)
..-+.++||+.+++.+...|... ...-+.++|++|+|||++|+.+++++... + ...+|..+...
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~-------- 248 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS-------- 248 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH--------
Confidence 34457999999999999988754 23456799999999999999999987443 1 23344332111
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChhHHHHHHH-ccCceEEEecCCCCh-----------hhhhhhhcCCCCCCCCeEEEEE
Q 005191 253 VHLRNQVLSKLLGENFDIGTPKIPQYIRDRL-QRMKVFIVLDDVNKY-----------GQLEYFDGGLDRFGPGSRIIVT 320 (709)
Q Consensus 253 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LLVLDdv~~~-----------~~~~~l~~~l~~~~~gsrIIvT 320 (709)
+.. .. .... ...+....+.+.+ ..++.+|++|+++.. +.-+.+.+.+. ....++|-+
T Consensus 249 --l~a----~~--~~~g-~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~Iga 317 (731)
T TIGR02639 249 --LLA----GT--KYRG-DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGS 317 (731)
T ss_pred --Hhh----hc--cccc-hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEe
Confidence 110 00 0000 0000111222222 346889999999632 11233444433 123455555
Q ss_pred cCchhhhh------h-cCcceEEEecCCChHHHHHHhhhcc
Q 005191 321 TRDKTILE------R-YGTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 321 TR~~~v~~------~-~~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
|...+... . ......+++++++.++..+++....
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 55422111 1 1123578999999999999998554
No 77
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00014 Score=80.20 Aligned_cols=200 Identities=14% Similarity=0.104 Sum_probs=111.9
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc--ccceEEEeeecccccccCCHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK--FEGKYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~v~~~~~~~~~~~~l~~l 255 (709)
|.....++|-+.-.+.|.+++..+. -.+.+.++|++|+||||+|..+++.+... ++...|....... .+.-..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~----c~~c~~ 86 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP----CGECES 86 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC----CCCCHH
Confidence 3455679999988888888887442 24568899999999999999999876431 1111111100000 011111
Q ss_pred HHHHHHHhcCCCCCCCC-----CChhHHHHHHH-----ccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEc-C
Q 005191 256 RNQVLSKLLGENFDIGT-----PKIPQYIRDRL-----QRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTT-R 322 (709)
Q Consensus 256 ~~~ll~~l~~~~~~~~~-----~~~~~~l~~~L-----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTT-R 322 (709)
.+.+............. .+.+..+.+.+ .+++-++|+|+++.. ..++.++..+....+.+.+|++| +
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 11111110000000000 11122222333 234568899999753 45666766666545666666555 4
Q ss_pred chhhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHH
Q 005191 323 DKTILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQV 384 (709)
Q Consensus 323 ~~~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~ 384 (709)
...+.... .....+++.+++.++..+.+...+-... ..-..+.+..|++.++|.+--+..
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 33333322 1225688999999999888877652211 123346688999999998854443
No 78
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00011 Score=87.39 Aligned_cols=190 Identities=13% Similarity=0.045 Sum_probs=108.5
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....+||.+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+....... ... .+.-...+.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~---------~~p-Cg~C~sC~~ 80 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPT---------STP-CGECDSCVA 80 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC---------CCC-CcccHHHHH
Confidence 445679999999999999887432 246788999999999999999998763211000 000 000000111
Q ss_pred HHHHhcCCCC-----CC---CCCChhHHHHHH-----HccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCc
Q 005191 259 VLSKLLGENF-----DI---GTPKIPQYIRDR-----LQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRD 323 (709)
Q Consensus 259 ll~~l~~~~~-----~~---~~~~~~~~l~~~-----L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~ 323 (709)
+... ..... +. ...+.+..+++. ..++.-++|||+++. .+..+.|+..+......+.+|++|.+
T Consensus 81 ~~~g-~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 81 LAPG-GPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred HHcC-CCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 1100 00000 00 000111112222 224556889999975 44566676666655566666665543
Q ss_pred -hhhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 324 -KTILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 324 -~~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
..+...+ +....|++..++.++..+++.+.+-... .....+....|++.++|.+..+
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG--v~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG--VPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 3444332 2346899999999999888877652222 1122345678899999988443
No 79
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.01 E-value=0.00016 Score=83.92 Aligned_cols=205 Identities=17% Similarity=0.160 Sum_probs=109.0
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh--cc---cceEEEeeecccccccCCH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ--KF---EGKYFMANVREESEKCGGL 252 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f---~~~~~v~~~~~~~~~~~~l 252 (709)
|...+.++|++..+..+.+.+.. +....+.|+|++|+||||||+.+++.... .+ ...-|+..-.... . .+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l-~-~d~ 225 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL-R-WDP 225 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc-c-CCH
Confidence 34456799999999988877653 34567999999999999999999875432 11 1223332111100 0 111
Q ss_pred HHHHHH---------------HHHHhcCCC-------------C---CCCCCC--hhHHHHHHHccCceEEEecCCCC--
Q 005191 253 VHLRNQ---------------VLSKLLGEN-------------F---DIGTPK--IPQYIRDRLQRMKVFIVLDDVNK-- 297 (709)
Q Consensus 253 ~~l~~~---------------ll~~l~~~~-------------~---~~~~~~--~~~~l~~~L~~kr~LLVLDdv~~-- 297 (709)
..+... .+...+... . +....+ ....+.+.+.++++.++-|+.|.
T Consensus 226 ~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~ 305 (615)
T TIGR02903 226 REVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDD 305 (615)
T ss_pred HHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCC
Confidence 111111 111111000 0 011111 45666777777777777665543
Q ss_pred hhhhhhhhcCCCCCCCCeEEEE--EcCchhhhh-hc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHH
Q 005191 298 YGQLEYFDGGLDRFGPGSRIIV--TTRDKTILE-RY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAH 373 (709)
Q Consensus 298 ~~~~~~l~~~l~~~~~gsrIIv--TTR~~~v~~-~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~ 373 (709)
...|+.+...+....+...+++ ||++..... .. +....+.+.+++.+|..+++.+.+-.... ....+..+.|.+
T Consensus 306 ~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v--~ls~eal~~L~~ 383 (615)
T TIGR02903 306 PNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV--HLAAGVEELIAR 383 (615)
T ss_pred cccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHH
Confidence 2345555444443334444444 566543211 11 12246789999999999999887632211 112345555666
Q ss_pred HhcCCchHHHHHhhh
Q 005191 374 YAKGNPLALQVLGSS 388 (709)
Q Consensus 374 ~~gGlPLAL~~la~~ 388 (709)
++..-+-++..++..
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 655446666655443
No 80
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.00 E-value=4.5e-05 Score=79.23 Aligned_cols=130 Identities=14% Similarity=0.179 Sum_probs=70.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcc--cceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKF--EGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRD 281 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 281 (709)
....+.++|++|+||||+|+.+++.+...- ....++. +. . ..+ .....+. ....+++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~---~-----~~l----~~~~~g~--------~~~~~~~ 99 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VE---R-----ADL----VGEYIGH--------TAQKTRE 99 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ec---H-----HHh----hhhhccc--------hHHHHHH
Confidence 356788999999999999999998753321 1112222 10 0 011 1111000 1111222
Q ss_pred HHcc-CceEEEecCCCC----------hhhhhhhhcCCCCCCCCeEEEEEcCchhhhh------hc--CcceEEEecCCC
Q 005191 282 RLQR-MKVFIVLDDVNK----------YGQLEYFDGGLDRFGPGSRIIVTTRDKTILE------RY--GTHRIYEVEGLN 342 (709)
Q Consensus 282 ~L~~-kr~LLVLDdv~~----------~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~------~~--~~~~~~~L~~L~ 342 (709)
.+.. ...+|++|+++. .+..+.+...+........+|+++.....-. .. .....+++++++
T Consensus 100 ~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~ 179 (261)
T TIGR02881 100 VIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYT 179 (261)
T ss_pred HHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCC
Confidence 2211 235899999964 2244556555544444445566654332100 11 123568899999
Q ss_pred hHHHHHHhhhcc
Q 005191 343 CNEALRLFCSCA 354 (709)
Q Consensus 343 ~~ea~~Lf~~~a 354 (709)
.++-.+++.+.+
T Consensus 180 ~~el~~Il~~~~ 191 (261)
T TIGR02881 180 VEELMEIAERMV 191 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999999988766
No 81
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00013 Score=79.80 Aligned_cols=184 Identities=14% Similarity=0.147 Sum_probs=107.0
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc--------ccceEEEeeeccccccc
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK--------FEGKYFMANVREESEKC 249 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~v~~~~~~~~~~ 249 (709)
|..-..++|.+..++.+.+.+..+ .-.+.+.++|++|+|||++|..+++.+... |...++- .... ..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~~-~~- 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDAA-SN- 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--eccc-cC-
Confidence 344567899999999999988743 235688899999999999999998876431 1111111 1000 00
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcC-chhh
Q 005191 250 GGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTR-DKTI 326 (709)
Q Consensus 250 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR-~~~v 326 (709)
.+.. ....+...+.... ..+++-++++|+++.. ..++.+...+......+.+|++|. ...+
T Consensus 88 ~~~~-~i~~l~~~~~~~p---------------~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 88 NSVD-DIRNLIDQVRIPP---------------QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CCHH-HHHHHHHHHhhcc---------------ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 1111 1112222211000 1234558999999643 345666554443334555555553 3222
Q ss_pred hhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHH
Q 005191 327 LER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQV 384 (709)
Q Consensus 327 ~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~ 384 (709)
... .+...++++++++.++....+...+..... .-..+.+..+++.++|.+-.+..
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRDALS 208 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHHH
Confidence 222 122357899999999999888876633221 12246688888999987764433
No 82
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.0002 Score=81.83 Aligned_cols=194 Identities=17% Similarity=0.112 Sum_probs=110.4
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....++|.+..++.|.+++..+ .-.+.+.++|+.|+||||+|+.+++.+....... . .. .+.-...+.
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~--------~p-Cg~C~~C~~ 78 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A--------TP-CGVCESCVA 78 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C--------Cc-ccccHHHHH
Confidence 44567999999999999998753 2245678999999999999999998754211000 0 00 000001111
Q ss_pred HHHHhcCC--C--CCC---CCCChhHHHHHHH-----ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCc-
Q 005191 259 VLSKLLGE--N--FDI---GTPKIPQYIRDRL-----QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRD- 323 (709)
Q Consensus 259 ll~~l~~~--~--~~~---~~~~~~~~l~~~L-----~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~- 323 (709)
+...-+.. . .+. ...+.+..+.+.+ .+++-++|+|+++. .+..+.|+..+........+|++|.+
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 11000000 0 000 0011111222221 23556899999964 45666777666655566666655543
Q ss_pred hhhhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCch-HHHHH
Q 005191 324 KTILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPL-ALQVL 385 (709)
Q Consensus 324 ~~v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPL-AL~~l 385 (709)
..+... .+....+++.+++.++..+.+.+.+-.... ....+.+..|++.++|.+- ++..+
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333332 223468999999999999888776633221 1223456788899999875 44443
No 83
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.96 E-value=1.2e-05 Score=73.99 Aligned_cols=88 Identities=22% Similarity=0.385 Sum_probs=47.0
Q ss_pred ceEEecCCcccccCchHHHHHHHHHhC-------CCce----------EEcC-CCCCCCcccHHHHHHHHhccceeEEec
Q 005191 6 YDVFLSFRGEDTRDNFLSHLVVALQEK-------KIKT----------FIDE-ELTRGDQISPALVKAIEESMISVIIFS 67 (709)
Q Consensus 6 ydvFiS~~~~D~~~~f~~~L~~~L~~~-------g~~~----------~~d~-~~~~g~~~~~~i~~ai~~S~~~ivvlS 67 (709)
|.|||||++.|.. ...+.|.+.+... .+.. +.+. +....+.|...|.++|..|.++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6799999999933 2677777777763 2221 1111 223345789999999999999999999
Q ss_pred cCcccchhhHHHHHHHHHhhhhCCceeEeEE
Q 005191 68 KNYASSKWCLDELVKILKCHKKNIQLVIPIF 98 (709)
Q Consensus 68 ~~y~~S~wc~~El~~~~~~~~~~~~~vlPvf 98 (709)
++-..|.|+..|+..+++ .+..|+.|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 999999999999998775 334577664
No 84
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.95 E-value=0.00011 Score=81.33 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=93.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhccc--ceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFE--GKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDR 282 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 282 (709)
...+.|+|++|+|||.|++.+++.+..+.+ ..+|+. ...+...+...+... ....+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN--------KMEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC--------CHHHHHHH
Confidence 457889999999999999999998876643 233333 112333344443221 12333444
Q ss_pred HccCceEEEecCCCChh---h-hhhhhcCCCC-CCCCeEEEEEcCch-hhh--------hhcCcceEEEecCCChHHHHH
Q 005191 283 LQRMKVFIVLDDVNKYG---Q-LEYFDGGLDR-FGPGSRIIVTTRDK-TIL--------ERYGTHRIYEVEGLNCNEALR 348 (709)
Q Consensus 283 L~~kr~LLVLDdv~~~~---~-~~~l~~~l~~-~~~gsrIIvTTR~~-~v~--------~~~~~~~~~~L~~L~~~ea~~ 348 (709)
+.+ .-+|+|||++... . -+.+...+.. ...+..+|+||... ... ..+....++++++.+.++-.+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 433 3488999996421 1 1222222211 12345677777542 211 122233578999999999999
Q ss_pred HhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHh
Q 005191 349 LFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLG 386 (709)
Q Consensus 349 Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la 386 (709)
++.+.+-... ....++....|++.+.|.+-.+.-+-
T Consensus 276 il~~~~~~~~--~~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 276 ILQKKAEEEG--LELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 9988874322 22234667888888888776554433
No 85
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00071 Score=76.19 Aligned_cols=190 Identities=14% Similarity=0.046 Sum_probs=108.2
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc-----ccceEEEeeecccccccCCHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-----FEGKYFMANVREESEKCGGLV 253 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~v~~~~~~~~~~~~l~ 253 (709)
.....++|-+.-++.|.+.+..+. -.+.+.++|+.|+||||+|+.++..+... .++..-
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c--------------- 76 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC--------------- 76 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc---------------
Confidence 345678999999999999987542 24667889999999999999999875321 011000
Q ss_pred HHHHHHHH----Hhc-CCCCCCCCCChhHHHHHHH-----ccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEc
Q 005191 254 HLRNQVLS----KLL-GENFDIGTPKIPQYIRDRL-----QRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTT 321 (709)
Q Consensus 254 ~l~~~ll~----~l~-~~~~~~~~~~~~~~l~~~L-----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTT 321 (709)
.-...+.. .+. .........+..+.+.+.. .+++-++|+|+++.. ...+.++..+....+...+|++|
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~t 156 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCT 156 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 00000000 000 0000000000122233222 245669999999743 44566665555444455555554
Q ss_pred -Cchhhhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHh
Q 005191 322 -RDKTILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLG 386 (709)
Q Consensus 322 -R~~~v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la 386 (709)
+...+... ......+++.+++.++....+...+-.... ....+.+..|++.++|.+..+....
T Consensus 157 t~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 157 TEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43333322 122357899999999999888876632221 1233567788899999876555444
No 86
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.86 E-value=0.00092 Score=73.57 Aligned_cols=223 Identities=17% Similarity=0.111 Sum_probs=129.3
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccC
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRM 286 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 286 (709)
++.|.|+-++||||+++.+....... .+++......... ..+.+... . +.+.-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~-~~l~d~~~----~----------------~~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR-IELLDLLR----A----------------YIELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch-hhHHHHHH----H----------------HHHhhccC
Confidence 99999999999999997766665444 4555422211111 11111111 1 11111116
Q ss_pred ceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchhhhhhc------CcceEEEecCCChHHHHHHhhhcccccCCC
Q 005191 287 KVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKTILERY------GTHRIYEVEGLNCNEALRLFCSCAFKENHC 360 (709)
Q Consensus 287 r~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~------~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~ 360 (709)
+.+++||.|.....|+.....+.+.++. +|++|+-+....... +....+++-||+..|-..+-.... .
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~- 168 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----E- 168 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----c-
Confidence 7899999999999999888777766666 888888776443321 334678999999999887653111 0
Q ss_pred ChhhHHHHHHHHHHhcCCchHHHHHhhhhcCCChhhHHHHHHHhhcCCCCcHHhHHHHhh-cCCCHHHHHHHHhcccc-c
Q 005191 361 PEDLLKHSETAAHYAKGNPLALQVLGSSFHRKSKPDWVNTLNNLKRISDSDIYGVLKIGY-DELSWEEKNLFLDIACF-F 438 (709)
Q Consensus 361 ~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~~~~~ew~~~L~~L~~~~~~~i~~~L~~Sy-~~L~~~~k~~fl~lA~F-p 438 (709)
...... .-+-.-.+||.|-++..-...-. ..+.....+. .++....- ... +..+.++.+++-. +
T Consensus 169 ~~~~~~-~f~~Yl~~GGfP~~v~~~~~~~~--~~~~~~~~~~----------~Di~~~~~~~~~-~~~k~i~~~l~~~~g 234 (398)
T COG1373 169 PSKLEL-LFEKYLETGGFPESVKADLSEKK--LKEYLDTILK----------RDIIERGKIENA-DLMKRILRFLASNIG 234 (398)
T ss_pred hhHHHH-HHHHHHHhCCCcHHHhCcchhhH--HHHHHHHHHH----------HHHHHHcCcccH-HHHHHHHHHHHhhcC
Confidence 001111 22233457999988755332211 0111111111 01111111 111 3556666655554 4
Q ss_pred cCcchhHHHHHH-hcCCchHHHHHHHHHhCCCeEEe
Q 005191 439 NGDDREHVMWIL-NDDYYSVQYGLNVLVNKSLIKIS 473 (709)
Q Consensus 439 ~~~~~~~l~~l~-~~~g~~~~~~l~~L~~rsLI~~~ 473 (709)
..++...+.+.+ ..+......+++.|.+.-++...
T Consensus 235 ~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~~ 270 (398)
T COG1373 235 SPISYSSLARELKGISKDTIRKYLSYLEDAFLLFLV 270 (398)
T ss_pred CccCHHHHHHHHhccchHHHHHHHHHHHHhhheEEe
Confidence 556899999988 45555678899999998888743
No 87
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.86 E-value=0.00041 Score=70.32 Aligned_cols=255 Identities=18% Similarity=0.183 Sum_probs=144.2
Q ss_pred CCCCCCccccchhhhHHHhhhhcc---CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIG---LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVH 254 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~ 254 (709)
|..-..|||-++-.+.|.=.+... ....--+.++|++|.||||||.-+++.+..++.. . .+..-++..+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~----t-sGp~leK~gD--- 93 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKI----T-SGPALEKPGD--- 93 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEe----c-ccccccChhh---
Confidence 445577999988888777666532 2346788999999999999999999987655321 1 0111111011
Q ss_pred HHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh--hhhhhhcCCCCC--------CCCeE--------
Q 005191 255 LRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG--QLEYFDGGLDRF--------GPGSR-------- 316 (709)
Q Consensus 255 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~--~~~~l~~~l~~~--------~~gsr-------- 316 (709)
+..++..+. ..=+|.+|.+.... .-+-+.+++.++ ++++|
T Consensus 94 -laaiLt~Le---------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 94 -LAAILTNLE---------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -HHHHHhcCC---------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 112222221 12256667774321 112222222221 23333
Q ss_pred ---EEEEcCchhhhhhcC--cceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhcC
Q 005191 317 ---IIVTTRDKTILERYG--THRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFHR 391 (709)
Q Consensus 317 ---IIvTTR~~~v~~~~~--~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~ 391 (709)
|=-|||...+...+. ..-+.+++-.+.+|-.+...+.+.. -.-+-.++.+.+|+++..|-|--..-+.+..++
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~--l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD 229 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI--LGIEIDEEAALEIARRSRGTPRIANRLLRRVRD 229 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH--hCCCCChHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 335888764433221 2246788888999999998887722 112233466899999999999765555554432
Q ss_pred C---------ChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhccccc--cCcchhHHHHHHhcCCchHHHH
Q 005191 392 K---------SKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIACFF--NGDDREHVMWILNDDYYSVQYG 460 (709)
Q Consensus 392 ~---------~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp--~~~~~~~l~~l~~~~g~~~~~~ 460 (709)
. +..--.. ....|..-=..|+.-.+..+..+.-.+ ++...+.+......+....++.
T Consensus 230 fa~V~~~~~I~~~ia~~------------aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv 297 (332)
T COG2255 230 FAQVKGDGDIDRDIADK------------ALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDV 297 (332)
T ss_pred HHHHhcCCcccHHHHHH------------HHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHH
Confidence 0 0011111 222333333456665566655554433 3346777777776665556655
Q ss_pred HHH-HHhCCCeEEe-CCE
Q 005191 461 LNV-LVNKSLIKIS-YNK 476 (709)
Q Consensus 461 l~~-L~~rsLI~~~-~~~ 476 (709)
++. |++.++|+.. .|+
T Consensus 298 ~EPyLiq~gfi~RTpRGR 315 (332)
T COG2255 298 IEPYLIQQGFIQRTPRGR 315 (332)
T ss_pred HhHHHHHhchhhhCCCcc
Confidence 554 8899999877 444
No 88
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.0003 Score=80.31 Aligned_cols=198 Identities=12% Similarity=0.089 Sum_probs=111.8
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....++|-+..++.|.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+...... . ... .+.-...+.
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~----~-----~~p-Cg~C~sC~~ 81 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAP----T-----GEP-CNTCEQCRK 81 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCC----C-----CCC-CcccHHHHH
Confidence 34567899888888888888743 125788899999999999999999875321100 0 000 000011111
Q ss_pred HHHHhcCCCCCCC---C--CChhHHHHHHH-----ccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCc-hh
Q 005191 259 VLSKLLGENFDIG---T--PKIPQYIRDRL-----QRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRD-KT 325 (709)
Q Consensus 259 ll~~l~~~~~~~~---~--~~~~~~l~~~L-----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~-~~ 325 (709)
+..........+. . .+..+.+.+.+ .+++-++|+|+++.. ...+.|+..+........+|++|.+ ..
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 1111000000000 0 00111222222 345679999999653 4566676666543455666665554 33
Q ss_pred hhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc-hHHHHHhhhh
Q 005191 326 ILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP-LALQVLGSSF 389 (709)
Q Consensus 326 v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP-LAL~~la~~L 389 (709)
+.... +....+++++++.++..+.+...+.... .....+.+..|++.++|.+ .|+..+...+
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg--i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG--VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33221 2235789999999999988877653322 1123456788999999965 5666665443
No 89
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00026 Score=81.53 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=109.3
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc--ccceEEEeeecccccccCCHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK--FEGKYFMANVREESEKCGGLVHLR 256 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~v~~~~~~~~~~~~l~~l~ 256 (709)
.....++|-+..+..|.+.+..+ .-...+.++|+.|+||||+|+.+++.+... .+...|....... .+.-...
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~----Cg~C~sC 87 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP----CGECESC 87 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC----CccCHHH
Confidence 44577999999999999888743 224668899999999999999999875331 1111111111000 1111111
Q ss_pred HHHHHHhcCCCCCCC--C---CChhHHHHHHH-----ccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEc-Cc
Q 005191 257 NQVLSKLLGENFDIG--T---PKIPQYIRDRL-----QRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTT-RD 323 (709)
Q Consensus 257 ~~ll~~l~~~~~~~~--~---~~~~~~l~~~L-----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTT-R~ 323 (709)
+.+...........+ . .+.+..+.+.+ .+++-++|+|+++.. ...+.|+..+....+.+.+|++| +.
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 111111000000000 0 11111222222 234558899999654 34666766665544555655544 43
Q ss_pred hhhhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 324 KTILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 324 ~~v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
..+... ......+++.+++.++....+.+.+-... ..-..+.+..|++.++|..--+
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i~I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG--IQIDADALQLIARKAQGSMRDA 225 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHH
Confidence 344332 22347899999999998888876553221 1123456788999999966533
No 90
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.86 E-value=0.00011 Score=88.48 Aligned_cols=151 Identities=16% Similarity=0.181 Sum_probs=85.6
Q ss_pred CCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc-c-----cceEEEeeecccccccCCHHH
Q 005191 181 SDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-F-----EGKYFMANVREESEKCGGLVH 254 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-----~~~~~v~~~~~~~~~~~~l~~ 254 (709)
...++||+++++.+.+.|.... .+-+.++|++|+|||++|..++.++... - ...+|..+...
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~---------- 245 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL---------- 245 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH----------
Confidence 4569999999999999997542 3345699999999999999999986532 1 23344332111
Q ss_pred HHHHHHHHhcCCCCCCCCCC-hhHHHHHHHccCceEEEecCCCChh----------hhhhhhcCCCCCCCCeEEEEEcCc
Q 005191 255 LRNQVLSKLLGENFDIGTPK-IPQYIRDRLQRMKVFIVLDDVNKYG----------QLEYFDGGLDRFGPGSRIIVTTRD 323 (709)
Q Consensus 255 l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LLVLDdv~~~~----------~~~~l~~~l~~~~~gsrIIvTTR~ 323 (709)
+. .+.......++ +...+.+.-..++.+|++|+++..- .-+-+.+.+. ....++|.+|..
T Consensus 246 l~-------ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~ 316 (821)
T CHL00095 246 LL-------AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTL 316 (821)
T ss_pred Hh-------ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCH
Confidence 10 01000000011 2222222223568999999995211 1222333332 123456666655
Q ss_pred hhhhhh-------cCcceEEEecCCChHHHHHHhhh
Q 005191 324 KTILER-------YGTHRIYEVEGLNCNEALRLFCS 352 (709)
Q Consensus 324 ~~v~~~-------~~~~~~~~L~~L~~~ea~~Lf~~ 352 (709)
.+.... ......+.++..+.++...++..
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 433211 11235678888999998888764
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00024 Score=82.36 Aligned_cols=190 Identities=13% Similarity=0.088 Sum_probs=107.1
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
|.....++|-+..++.|.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-....+ .. .....
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~--------~p----C~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL--------EP----CQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC--------Cc----hhHHH
Confidence 344567899999999999988743 235677899999999999999999865321100000 00 00000
Q ss_pred HHHH-H---hcCCCCCCCCCChhHHHHHHH-----ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEc-Cchh
Q 005191 258 QVLS-K---LLGENFDIGTPKIPQYIRDRL-----QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTT-RDKT 325 (709)
Q Consensus 258 ~ll~-~---l~~~~~~~~~~~~~~~l~~~L-----~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTT-R~~~ 325 (709)
.... . +..........+.++.+.+.+ .+++-++|+|+++. ...+..++..+......+.+|++| +...
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 0000 0 000000000001122222222 24566899999964 346667776665444555555444 4444
Q ss_pred hhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 326 ILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 326 v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
+... .+....+++.+++.++..+.+...+-... -....+.+..+++.++|.+--+
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 4332 22336889999999999988877552222 1122345778999999977533
No 92
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.82 E-value=0.00055 Score=82.71 Aligned_cols=154 Identities=11% Similarity=0.128 Sum_probs=86.4
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc------cceEEEeeecccccccCCH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF------EGKYFMANVREESEKCGGL 252 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~v~~~~~~~~~~~~l 252 (709)
..-+.++||+.+++.+...|.... ..-+.++|++|+|||++|..+++++...+ ...+|..++..
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~-------- 239 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA-------- 239 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH--------
Confidence 344679999999999999987542 34456899999999999999999875431 22333321111
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChhHHHHHHH-c-cCceEEEecCCCChh----------hhhhhhcCCCCCCCCeEEEEE
Q 005191 253 VHLRNQVLSKLLGENFDIGTPKIPQYIRDRL-Q-RMKVFIVLDDVNKYG----------QLEYFDGGLDRFGPGSRIIVT 320 (709)
Q Consensus 253 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~-~kr~LLVLDdv~~~~----------~~~~l~~~l~~~~~gsrIIvT 320 (709)
+. . +.............+.+.+ . +++.+|++|+++... ..+.+.+.+. ....++|.+
T Consensus 240 --l~----a---~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~Iga 308 (852)
T TIGR03346 240 --LI----A---GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGA 308 (852)
T ss_pred --Hh----h---cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEe
Confidence 10 0 0000000001112222222 2 368999999996321 2223333332 223455555
Q ss_pred cCchhhhhh-------cCcceEEEecCCChHHHHHHhhhc
Q 005191 321 TRDKTILER-------YGTHRIYEVEGLNCNEALRLFCSC 353 (709)
Q Consensus 321 TR~~~v~~~-------~~~~~~~~L~~L~~~ea~~Lf~~~ 353 (709)
|.....-.. ......+.++..+.++..+++...
T Consensus 309 Tt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred CcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 554432110 112246789999999999988654
No 93
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.81 E-value=0.00017 Score=77.13 Aligned_cols=150 Identities=16% Similarity=0.208 Sum_probs=84.9
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
|.....++|.+...+.+..++..+ .-..++.++|++|+|||++|+.+++.....+ ..+. ... .... ..+
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~~-----~~~~-~i~ 85 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GSD-----CRID-FVR 85 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cCc-----ccHH-HHH
Confidence 345577899999999999988743 2356787899999999999999988753221 2222 111 1111 111
Q ss_pred HHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh---hhhhhhhcCCCCCCCCeEEEEEcCchhhh-hhc-Cc
Q 005191 258 QVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY---GQLEYFDGGLDRFGPGSRIIVTTRDKTIL-ERY-GT 332 (709)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~---~~~~~l~~~l~~~~~gsrIIvTTR~~~v~-~~~-~~ 332 (709)
..+....... .+...+-++|+|+++.. +..+.+...+.....++++|+||...... ... +.
T Consensus 86 ~~l~~~~~~~--------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 86 NRLTRFASTV--------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHHHhh--------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 1111110000 01134568999999754 22223333233335677888888654211 111 12
Q ss_pred ceEEEecCCChHHHHHHhhh
Q 005191 333 HRIYEVEGLNCNEALRLFCS 352 (709)
Q Consensus 333 ~~~~~L~~L~~~ea~~Lf~~ 352 (709)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 24667777788777766543
No 94
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.0013 Score=74.24 Aligned_cols=191 Identities=15% Similarity=0.086 Sum_probs=109.9
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc-ccc--eEEEeeecccccccCCHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEG--KYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~--~~~v~~~~~~~~~~~~l~~l 255 (709)
..-..++|-+.-.+.|...+..+. -.+++.++|+.|+||||+|+.+++.+-.. ... .|.. ...
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~-------------C~~ 76 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT-------------CIQ 76 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc-------------cHH
Confidence 445679999988899998887442 35677899999999999999999875321 100 0000 000
Q ss_pred HHHHHHHhcCCCCCC--CCCChhHHHHHHH--------ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCc
Q 005191 256 RNQVLSKLLGENFDI--GTPKIPQYIRDRL--------QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRD 323 (709)
Q Consensus 256 ~~~ll~~l~~~~~~~--~~~~~~~~l~~~L--------~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~ 323 (709)
...+........... ......+.+++.. .+++-++|+|+++. .+..+.++..+....+.+++|++|.+
T Consensus 77 C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred HHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 000000000000000 0000111222211 13456899999975 44566666666554566777777765
Q ss_pred h-hhhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHH
Q 005191 324 K-TILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 324 ~-~v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
. .+... .+....+++.+++.++..+.+...+-.... ....+.+..|++.++|.+--+..+
T Consensus 157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 4 22211 122368899999999999988766633221 123456788999999988555443
No 95
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00055 Score=73.18 Aligned_cols=93 Identities=11% Similarity=0.125 Sum_probs=61.8
Q ss_pred ceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCchh-hhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCCh
Q 005191 287 KVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDKT-ILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPE 362 (709)
Q Consensus 287 r~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~~-v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~ 362 (709)
+-++|+|+++. .+..+.++..+..-..++.+|+||.+.. +.... +.-..+.+.+++.+++.+.+.... ..
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~----- 180 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE----- 180 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc-----
Confidence 34557799974 4566777766665456777777777653 33322 233678999999999999987653 11
Q ss_pred hhHHHHHHHHHHhcCCchHHHHH
Q 005191 363 DLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 363 ~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
...+.+..++..++|.|+....+
T Consensus 181 ~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CChHHHHHHHHHcCCCHHHHHHH
Confidence 11233567788999999765544
No 96
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.80 E-value=0.00052 Score=82.66 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=41.8
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
..-+.++||+.+++.+...|... ...-+.++|++|+|||+||+.++.++..
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 34467999999999999998754 2345668999999999999999998754
No 97
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00035 Score=78.05 Aligned_cols=192 Identities=13% Similarity=0.116 Sum_probs=105.8
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....++|.+..++.|.+.+..+. -.+.+.++|++|+||||+|+.+++.+...-.. .+. .. .+.......
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~----~~~----~~-c~~c~~C~~ 83 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPT----EDQ----EP-CNQCASCKE 83 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcc----cCC----CC-CcccHHHHH
Confidence 445779999999999999887432 24678899999999999999999875321000 000 00 000000000
Q ss_pred HHHHhcCCCCCC---CC--CChhHHHHHHH-----ccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCc-hh
Q 005191 259 VLSKLLGENFDI---GT--PKIPQYIRDRL-----QRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRD-KT 325 (709)
Q Consensus 259 ll~~l~~~~~~~---~~--~~~~~~l~~~L-----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~-~~ 325 (709)
+...-....... .. .+.+..+.+.+ .+++-++|+|+++.. +..+.+...+........+|++|.+ ..
T Consensus 84 i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~k 163 (451)
T PRK06305 84 ISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHK 163 (451)
T ss_pred HhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHh
Confidence 000000000000 00 00111111111 245678999999643 3455566555544456666666543 33
Q ss_pred hhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 326 ILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 326 v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
+.... +....+++.+++.++..+.+...+-... -....+.+..|++.++|.+--+
T Consensus 164 l~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 164 IPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred cchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 32221 2335789999999999888877653221 1123456788999999977533
No 98
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00036 Score=79.39 Aligned_cols=159 Identities=14% Similarity=0.178 Sum_probs=92.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhccc--ceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFE--GKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDR 282 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 282 (709)
...+.|+|..|+|||.|+..+++.+...+. .+.|+. ...+...+...+... ....+++.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~--------~~~~f~~~ 374 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG--------KGDSFRRR 374 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc--------cHHHHHHH
Confidence 345899999999999999999998765432 233443 122333444333211 12234444
Q ss_pred HccCceEEEecCCCCh---hhh-hhhhcCCCC-CCCCeEEEEEcCch---------hhhhhcCcceEEEecCCChHHHHH
Q 005191 283 LQRMKVFIVLDDVNKY---GQL-EYFDGGLDR-FGPGSRIIVTTRDK---------TILERYGTHRIYEVEGLNCNEALR 348 (709)
Q Consensus 283 L~~kr~LLVLDdv~~~---~~~-~~l~~~l~~-~~~gsrIIvTTR~~---------~v~~~~~~~~~~~L~~L~~~ea~~ 348 (709)
+.+ .=+|+|||+... +.+ +.+...+.. ...+..|||||+.. .+...+...-+++|++.+.+.-.+
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 433 357889999532 111 222222211 13356688888753 122233445688999999999999
Q ss_pred HhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHH
Q 005191 349 LFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 349 Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
++.+.+-... -....++++-|++.+.++.-.|.-+
T Consensus 454 IL~kka~~r~--l~l~~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 454 ILRKKAVQEQ--LNAPPEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHHHHhcC--CCCCHHHHHHHHHhccCCHHHHHHH
Confidence 9988773322 1223466777777777665444443
No 99
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00036 Score=77.72 Aligned_cols=153 Identities=12% Similarity=0.100 Sum_probs=86.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ 284 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 284 (709)
...+.|+|++|+|||+|++.+++.+........++. . ..+...+...+... ....+++.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----~------~~f~~~~~~~l~~~--------~~~~f~~~~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----S------ELFTEHLVSAIRSG--------EMQRFRQFYR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----H------HHHHHHHHHHHhcc--------hHHHHHHHcc
Confidence 356889999999999999999998765444444554 1 12333444443211 1223444333
Q ss_pred cCceEEEecCCCChh----hhhhhhcCCCC-CCCCeEEEEEcCch-h--------hhhhcCcceEEEecCCChHHHHHHh
Q 005191 285 RMKVFIVLDDVNKYG----QLEYFDGGLDR-FGPGSRIIVTTRDK-T--------ILERYGTHRIYEVEGLNCNEALRLF 350 (709)
Q Consensus 285 ~kr~LLVLDdv~~~~----~~~~l~~~l~~-~~~gsrIIvTTR~~-~--------v~~~~~~~~~~~L~~L~~~ea~~Lf 350 (709)
..-+|++||+.... .-+.+...+.. ...|..||+||... . +...+....++++.+++.++-.+++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 44588899985421 11222221110 12355788888542 2 1222333468899999999999999
Q ss_pred hhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 351 CSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
.+.+-... ..-..++..-|++.+.|+-
T Consensus 281 ~~k~~~~~--~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALS--IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhcCCCH
Confidence 87763321 1122345566666666543
No 100
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.0011 Score=76.87 Aligned_cols=198 Identities=17% Similarity=0.139 Sum_probs=110.9
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....++|.+.....|..++..+. -.+.+.++|+.|+||||+|+.+++.+........ . ... .+.....+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~------~~~-Cg~C~~C~~ 83 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T------PEP-CGKCELCRA 83 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C------CCC-CcccHHHHH
Confidence 445678999999999999887542 2467889999999999999999997543210000 0 000 111112222
Q ss_pred HHHHhcCCCCCCC--CCChhHHHHHHH--------ccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCch-h
Q 005191 259 VLSKLLGENFDIG--TPKIPQYIRDRL--------QRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRDK-T 325 (709)
Q Consensus 259 ll~~l~~~~~~~~--~~~~~~~l~~~L--------~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~~-~ 325 (709)
+............ .....+.+++.+ .+++-++|+|+++.. +..+.|+..+........+|++|.+. .
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 2111110000000 001222222221 234568999999753 45666766665444455555555443 3
Q ss_pred hhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhh
Q 005191 326 ILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGS 387 (709)
Q Consensus 326 v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~ 387 (709)
+.... +....+++.+++.++....+.+.+..... ....+.+..|++.++|.+..+..+..
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi--~is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI--EIEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33322 22357788899999888877766532211 11234578899999998865554433
No 101
>PRK06620 hypothetical protein; Validated
Probab=97.76 E-value=0.00012 Score=73.59 Aligned_cols=137 Identities=11% Similarity=-0.009 Sum_probs=79.7
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHcc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQR 285 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 285 (709)
+.+.|+|++|+|||+|++.+++.... .++. .. .. .. +.. +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~------~~-~~----~~-----------------------~~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK------DI-FF----NE-----------------------EIL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcc------hh-hh----ch-----------------------hHH-h
Confidence 67899999999999999987765421 2221 00 00 00 001 1
Q ss_pred CceEEEecCCCChhh--hhhhhcCCCCCCCCeEEEEEcCchhh-------hhhcCcceEEEecCCChHHHHHHhhhcccc
Q 005191 286 MKVFIVLDDVNKYGQ--LEYFDGGLDRFGPGSRIIVTTRDKTI-------LERYGTHRIYEVEGLNCNEALRLFCSCAFK 356 (709)
Q Consensus 286 kr~LLVLDdv~~~~~--~~~l~~~l~~~~~gsrIIvTTR~~~v-------~~~~~~~~~~~L~~L~~~ea~~Lf~~~a~~ 356 (709)
..-+|++||++..++ +-.+...+. ..|..+|+|++.... ...+...-++++++++.++-.+++.+.+-.
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 234788999974332 222222222 346688998875421 222233458999999999988888776632
Q ss_pred cCCCChhhHHHHHHHHHHhcCCchHHHHHh
Q 005191 357 ENHCPEDLLKHSETAAHYAKGNPLALQVLG 386 (709)
Q Consensus 357 ~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la 386 (709)
.. -.-.+++.+-|++.+.|.--.+.-+-
T Consensus 163 ~~--l~l~~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 163 SS--VTISRQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred cC--CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 11 11234567777777777655544433
No 102
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.75 E-value=0.00014 Score=81.60 Aligned_cols=157 Identities=22% Similarity=0.348 Sum_probs=89.0
Q ss_pred CCCCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcc-----cceEEEeeec
Q 005191 180 DSDGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF-----EGKYFMANVR 243 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~v~~~~ 243 (709)
.-..+.|.+..++++.+.+.. +-...+-+.|+|++|+|||++|+.+++.+...+ ....|+. +.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 345577899998888886532 112356789999999999999999999875542 1233332 11
Q ss_pred ccccccCCHHHHHHHHHHHhcCCCCCCCCCChhH----HHHHH-HccCceEEEecCCCChh---------h-----hhhh
Q 005191 244 EESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQ----YIRDR-LQRMKVFIVLDDVNKYG---------Q-----LEYF 304 (709)
Q Consensus 244 ~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~----~l~~~-L~~kr~LLVLDdv~~~~---------~-----~~~l 304 (709)
.. .++....+. ...... ..++. ..+++++|+||+++... . +..+
T Consensus 259 ~~------------eLl~kyvGe-----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~L 321 (512)
T TIGR03689 259 GP------------ELLNKYVGE-----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQL 321 (512)
T ss_pred ch------------hhcccccch-----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHH
Confidence 10 000000000 000111 11111 12478999999996321 1 2234
Q ss_pred hcCCCCC--CCCeEEEEEcCchhhhh-h----cCcceEEEecCCChHHHHHHhhhcc
Q 005191 305 DGGLDRF--GPGSRIIVTTRDKTILE-R----YGTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 305 ~~~l~~~--~~gsrIIvTTR~~~v~~-~----~~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
+..+... ..+..||.||....... . ...+..++++..+.++..++|..+.
T Consensus 322 L~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 322 LSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3333321 13455666665543322 1 1234678999999999999998876
No 103
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.73 E-value=0.00029 Score=77.27 Aligned_cols=175 Identities=19% Similarity=0.243 Sum_probs=98.0
Q ss_pred CCCCCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccc
Q 005191 179 SDSDGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE 247 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~ 247 (709)
..-..+.|.+...++|.+.+.. +-..++-+.|+|++|+|||+||+.+++.....| +.+. .
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~--~---- 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV--G---- 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe--h----
Confidence 3445688998888888876531 112467899999999999999999998754332 1111 0
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCCCC-hhHHHHHHHccCceEEEecCCCChh----------------hhhhhhcCCCC
Q 005191 248 KCGGLVHLRNQVLSKLLGENFDIGTPK-IPQYIRDRLQRMKVFIVLDDVNKYG----------------QLEYFDGGLDR 310 (709)
Q Consensus 248 ~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LLVLDdv~~~~----------------~~~~l~~~l~~ 310 (709)
..+ .....+. ... ....+.......+.+|+||+++... .+..++..+..
T Consensus 213 -----s~l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 213 -----SEF----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred -----HHH----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 011 1111000 001 2222333334678999999985320 12223322221
Q ss_pred --CCCCeEEEEEcCchhhhhh-----cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 311 --FGPGSRIIVTTRDKTILER-----YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 311 --~~~gsrIIvTTR~~~v~~~-----~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
...+..||.||........ ...+..++++..+.++..++|..+..+..... . -...++++.+.|.-
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-d--vd~~~la~~t~g~s 351 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-E--VDLEDFVSRPEKIS 351 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-c--cCHHHHHHHcCCCC
Confidence 1245678888876543321 12356789999999988888876653222111 1 12456666676653
No 104
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.0016 Score=74.58 Aligned_cols=195 Identities=12% Similarity=0.051 Sum_probs=111.8
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
|.....++|-+.-++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-..-.... .+ .+.-...+
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---------~p-C~~C~~C~ 80 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---------MP-CGECSSCK 80 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---------CC-CccchHHH
Confidence 3445679999999999999987532 3567889999999999999999987532100000 00 00000001
Q ss_pred HHHHHhcCCCCCCC--CCChhHHHHHH--------HccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch-
Q 005191 258 QVLSKLLGENFDIG--TPKIPQYIRDR--------LQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK- 324 (709)
Q Consensus 258 ~ll~~l~~~~~~~~--~~~~~~~l~~~--------L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~- 324 (709)
.+............ .....+.+++. ..+++-++|+|+++. ....+.++..+....+.+.+|++|.+.
T Consensus 81 ~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~ 160 (563)
T PRK06647 81 SIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160 (563)
T ss_pred HHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChH
Confidence 11100000000000 00011222211 134566899999965 445677777776555667776666443
Q ss_pred hhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHH
Q 005191 325 TILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 325 ~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
.+.... +....+++.+++.++..+.+.+.+..... ....+.+..|++.++|.+-.+..+
T Consensus 161 kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 332221 22357899999999998888776633221 223456788999999988544443
No 105
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.72 E-value=0.00015 Score=74.13 Aligned_cols=184 Identities=17% Similarity=0.161 Sum_probs=111.6
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh--cccceEEEeeecccccccCCHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ--KFEGKYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~v~~~~~~~~~~~~l~~l 255 (709)
|.....++|-+..++.|.+.+.. ........+|++|.|||+-|..+++.+-. -|++++--.+.+... +..-.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder----Gisvv 105 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER----GISVV 105 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc----cccch
Confidence 44567799999999999998875 35778889999999999999999987533 355555433332221 11100
Q ss_pred HHHH--HHHhcCCCCCCCCCChhHHHHHHHccCc-eEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCchhhh-hh
Q 005191 256 RNQV--LSKLLGENFDIGTPKIPQYIRDRLQRMK-VFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDKTIL-ER 329 (709)
Q Consensus 256 ~~~l--l~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~-~~ 329 (709)
...+ ..++......... . ..++ -++|||+++. .+.|..+...+..+...++.|+.+...... ..
T Consensus 106 r~Kik~fakl~~~~~~~~~---------~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 106 REKIKNFAKLTVLLKRSDG---------Y-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhhhcCHHHHhhccccccC---------C-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 0000 0111000000000 0 0123 4789999975 557888887777767777766555443211 11
Q ss_pred c-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 330 Y-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 330 ~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
. +.-..|..++|..++...-+...+-.+. .+-..+..+.|++.++|--
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~--v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEG--VDIDDDALKLIAKISDGDL 224 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCcH
Confidence 1 1124578899999998888877774333 2233466788999888853
No 106
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.0011 Score=71.57 Aligned_cols=205 Identities=14% Similarity=0.117 Sum_probs=117.3
Q ss_pred CCCCCccccchhhhHHHhhhhc--cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccc--eEEEeeecccccccCCHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAI--GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEG--KYFMANVREESEKCGGLVH 254 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~v~~~~~~~~~~~~l~~ 254 (709)
..+..++||+.|+..+.+++.. ..+..+.+-|.|-+|.|||.+...++.+....... .+++....- .....
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl-----~~~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSL-----TEASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccc-----cchHH
Confidence 4568899999999999999874 33456788899999999999999999877655433 355542211 22344
Q ss_pred HHHHHHHHh-cCCCCCCCCCChhHHHHHHHcc--CceEEEecCCCChhh--hhhhhcCCCCC-CCCeEEEEEcCch----
Q 005191 255 LRNQVLSKL-LGENFDIGTPKIPQYIRDRLQR--MKVFIVLDDVNKYGQ--LEYFDGGLDRF-GPGSRIIVTTRDK---- 324 (709)
Q Consensus 255 l~~~ll~~l-~~~~~~~~~~~~~~~l~~~L~~--kr~LLVLDdv~~~~~--~~~l~~~l~~~-~~gsrIIvTTR~~---- 324 (709)
++..+...+ ..........+....+...... ..+|+|+|..+.... -..+...+.|- -+++++|+.--..
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 555555555 2221111112244444444433 368999999864321 11122222221 2566665433211
Q ss_pred --hhhhhc-----CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 325 --TILERY-----GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 325 --~v~~~~-----~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
..+... .....+..+|.+.++-.+++..+.-. ..........++.+++++.|.---+..+....
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~-~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~ 372 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE-ESTSIFLNAAIELCARKVAAPSGDLRKALDVC 372 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc-ccccccchHHHHHHHHHhccCchhHHHHHHHH
Confidence 111111 13467889999999999999988732 22222222344555556655544444444433
No 107
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00069 Score=77.75 Aligned_cols=193 Identities=15% Similarity=0.116 Sum_probs=108.9
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
|.....++|.+...+.|.+.+..+. -.+.+.++|+.|+|||++|+.+++.+...-... ..+ .+......
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~p-C~~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GEP-CNECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCC-CCccHHHH
Confidence 3456789999999999999987542 356778899999999999999988653211000 000 00011111
Q ss_pred HHHHHhcCCCCCCC--CCCh---hHHHHHHH-----ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEc-Cch
Q 005191 258 QVLSKLLGENFDIG--TPKI---PQYIRDRL-----QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTT-RDK 324 (709)
Q Consensus 258 ~ll~~l~~~~~~~~--~~~~---~~~l~~~L-----~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTT-R~~ 324 (709)
.+...........+ .... +..+.+.. .++.-++|+|+++. ......|+..+........+|++| ...
T Consensus 81 ~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 11111000000000 0011 22222221 23566889999975 345666766655434455555544 333
Q ss_pred hhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHH
Q 005191 325 TILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQ 383 (709)
Q Consensus 325 ~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~ 383 (709)
.+.... +....+++.+++.++..+.+...+-.... ....+.+..|++.++|.+.-+.
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi--~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI--EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 333221 23357889999999998888776632221 1223567788889988776443
No 108
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.70 E-value=0.00019 Score=65.70 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEEccCCCchhHHHHHHHHHhh
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 109
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.69 E-value=0.00026 Score=78.26 Aligned_cols=173 Identities=20% Similarity=0.265 Sum_probs=97.2
Q ss_pred CCCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccccc
Q 005191 181 SDGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKC 249 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~ 249 (709)
-..+.|.+.+++++.+.+.. +-...+-+.|+|++|+|||++|+.+++.....|- .+. .
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~--~------ 250 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV--G------ 250 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe--c------
Confidence 35578999999998887642 1123567889999999999999999998655431 111 0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCC-hhHHHHHHHccCceEEEecCCCChh----------------hhhhhhcCCCC--
Q 005191 250 GGLVHLRNQVLSKLLGENFDIGTPK-IPQYIRDRLQRMKVFIVLDDVNKYG----------------QLEYFDGGLDR-- 310 (709)
Q Consensus 250 ~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LLVLDdv~~~~----------------~~~~l~~~l~~-- 310 (709)
.. +. ....+. ... ....+.....+.+.+|+||+++... .+..++..+..
T Consensus 251 se---L~----~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 251 SE---LI----QKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred ch---hh----hhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 00 11 011000 001 1222222334578899999984211 11122222221
Q ss_pred CCCCeEEEEEcCchhhhhh-c----CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 311 FGPGSRIIVTTRDKTILER-Y----GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 311 ~~~gsrIIvTTR~~~v~~~-~----~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
...+..||.||........ . .....++++..+.++..++|..+..+...... -....++..+.|.-
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d---vdl~~la~~t~g~s 389 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED---VDLEEFIMAKDELS 389 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC---cCHHHHHHhcCCCC
Confidence 1245678888876543332 1 23568899999999999999877633221111 11345566665543
No 110
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.67 E-value=0.0007 Score=71.08 Aligned_cols=129 Identities=12% Similarity=0.120 Sum_probs=71.1
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhc--ccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQK--FEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
.-+.++|++|+|||++|+.+++.+... .....|+.. + .. .++..+.+.. .......+.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v----~-----~~----~l~~~~~g~~----~~~~~~~~~~-- 119 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV----T-----RD----DLVGQYIGHT----APKTKEILKR-- 119 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe----c-----HH----HHhHhhcccc----hHHHHHHHHH--
Confidence 358899999999999999888865432 111223320 0 01 1222221111 0001122222
Q ss_pred ccCceEEEecCCCCh-----------hhhhhhhcCCCCCCCCeEEEEEcCchhhhhh--c------CcceEEEecCCChH
Q 005191 284 QRMKVFIVLDDVNKY-----------GQLEYFDGGLDRFGPGSRIIVTTRDKTILER--Y------GTHRIYEVEGLNCN 344 (709)
Q Consensus 284 ~~kr~LLVLDdv~~~-----------~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~--~------~~~~~~~L~~L~~~ 344 (709)
-..-+|+||+++.. +..+.+...+.....+.+||+++.....-.. . .....+++++++.+
T Consensus 120 -a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 120 -AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred -ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 13469999999632 2234455555444456677777654321111 1 12357899999999
Q ss_pred HHHHHhhhcc
Q 005191 345 EALRLFCSCA 354 (709)
Q Consensus 345 ea~~Lf~~~a 354 (709)
|-.+++...+
T Consensus 199 dl~~I~~~~l 208 (284)
T TIGR02880 199 ELLVIAGLML 208 (284)
T ss_pred HHHHHHHHHH
Confidence 9999987766
No 111
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.002 Score=68.59 Aligned_cols=194 Identities=13% Similarity=0.071 Sum_probs=109.9
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh---------------cccceEEEeeecccc
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ---------------KFEGKYFMANVREES 246 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------~f~~~~~v~~~~~~~ 246 (709)
..++|-+...+.+.+.+..+. -.+...++|+.|+||+++|..+++.+-. .++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 458899999999998887541 2578999999999999999999886422 233444443210000
Q ss_pred cccCCHHHHHHHHHHHhcCCCCCCCC--CChhHHHHHHHc-----cCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEE
Q 005191 247 EKCGGLVHLRNQVLSKLLGENFDIGT--PKIPQYIRDRLQ-----RMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRI 317 (709)
Q Consensus 247 ~~~~~l~~l~~~ll~~l~~~~~~~~~--~~~~~~l~~~L~-----~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrI 317 (709)
.. .. -...+...+........ .+.++.+.+.+. +++-++|+|+++.. ...+.++..+.... .+.+
T Consensus 83 g~--~~---~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 83 GK--LI---TASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cc--cc---chhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00 00 00000111100000000 012223333332 45668999999753 45566665555434 4455
Q ss_pred EEEc-Cchhhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhh
Q 005191 318 IVTT-RDKTILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGS 387 (709)
Q Consensus 318 IvTT-R~~~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~ 387 (709)
|++| ....+.+.. +....+++.+++.++..+.+.+..... ........++..++|.|.....+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-----~~~~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-----ILNINFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-----cchhHHHHHHHHcCCCHHHHHHHHH
Confidence 5554 444444432 234688999999999999998764211 1111146788999999976655433
No 112
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.64 E-value=0.00022 Score=84.04 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=85.9
Q ss_pred CCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc------cceEEEeeecccccccCCHHH
Q 005191 181 SDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF------EGKYFMANVREESEKCGGLVH 254 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~v~~~~~~~~~~~~l~~ 254 (709)
-+.++||+.+++++...|.... ..-+.|+|++|+|||++|+.+++++...- +...|.. ++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l----------~~~- 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL----------DIG- 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec----------cHH-
Confidence 3569999999999999888632 23446899999999999999998754321 2222221 111
Q ss_pred HHHHHHHHhcCCCCCCCCCChhHHHHHHH-ccCceEEEecCCCCh----------hhhh-hhhcCCCCCCCCeEEEEEcC
Q 005191 255 LRNQVLSKLLGENFDIGTPKIPQYIRDRL-QRMKVFIVLDDVNKY----------GQLE-YFDGGLDRFGPGSRIIVTTR 322 (709)
Q Consensus 255 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LLVLDdv~~~----------~~~~-~l~~~l~~~~~gsrIIvTTR 322 (709)
.++. +..... ........+.+.+ ..++.+|+||+++.. .+.. .+.+.+. ...-++|-+|.
T Consensus 252 ---~lla--G~~~~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt 323 (758)
T PRK11034 252 ---SLLA--GTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_pred ---HHhc--ccchhh-hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCC
Confidence 1110 000000 0011222222222 346789999999632 1121 2333332 23345565555
Q ss_pred chhhhhh-------cCcceEEEecCCChHHHHHHhhhcc
Q 005191 323 DKTILER-------YGTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 323 ~~~v~~~-------~~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
.++.... ......+.+++++.++..+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4432111 1123578999999999999987543
No 113
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.63 E-value=0.0019 Score=64.97 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=42.2
Q ss_pred CCCCCCccccchhhhHHHhhhhc--cCCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAI--GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
+...+.++|.+.+.+.|.+-... ......-+.+||..|.|||+|++++.+.+...
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 44567899999999988775432 12235677789999999999999999887654
No 114
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.0028 Score=73.51 Aligned_cols=182 Identities=14% Similarity=0.131 Sum_probs=107.4
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhccc----------------------ce
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE----------------------GK 236 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~----------------------~~ 236 (709)
.....++|-+...+.|...+..+ .-.+.+.++|+.|+||||+|+.++..+..... ..
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 44567999999999999988743 12567889999999999999999887531110 00
Q ss_pred EEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCC--hhhhhhhhcCCCCCCCC
Q 005191 237 YFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPG 314 (709)
Q Consensus 237 ~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~g 314 (709)
..+. . ... ... +-.+.++..+.... ..+++=++|+|+++. .+..+.|+..+......
T Consensus 93 ~~ld---~-~~~-~~v-d~Ir~li~~~~~~P---------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 93 HELD---A-ASN-NSV-DDIRNLIEQVRIPP---------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred EEec---c-ccc-CCH-HHHHHHHHHHhhCc---------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 0000 0 000 001 11111111110000 112445889999965 34566676666554556
Q ss_pred eEEEEEc-Cchhhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHH
Q 005191 315 SRIIVTT-RDKTILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQV 384 (709)
Q Consensus 315 srIIvTT-R~~~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~ 384 (709)
+.+|++| ....+.... +...++++.+++.++....+.+.+-.... ....+.+..|++.++|..--+..
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 6665544 444444332 23467899999999999888876533221 12235678899999997754433
No 115
>PRK08116 hypothetical protein; Validated
Probab=97.58 E-value=0.00032 Score=72.94 Aligned_cols=102 Identities=25% Similarity=0.290 Sum_probs=57.7
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHcc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQR 285 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 285 (709)
..+.|+|.+|+|||.||..+++.+..+...++|+. ...++..+....... .......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~-----~~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSS-----GKEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcc-----ccccHHHHHHHhcC
Confidence 46889999999999999999998876633344443 223344443333211 11122234444554
Q ss_pred CceEEEecCCC--Chhhh--hhhhcCCCC-CCCCeEEEEEcCch
Q 005191 286 MKVFIVLDDVN--KYGQL--EYFDGGLDR-FGPGSRIIVTTRDK 324 (709)
Q Consensus 286 kr~LLVLDdv~--~~~~~--~~l~~~l~~-~~~gsrIIvTTR~~ 324 (709)
-. ||||||+. ....| +.+...+.. ...+..+|+||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44 89999993 22222 222222221 13556788988654
No 116
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0014 Score=75.60 Aligned_cols=195 Identities=13% Similarity=0.124 Sum_probs=106.9
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
|.....++|-+...+.|.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+...-... ... .+......
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~---------~~~-c~~c~~c~ 80 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT---------AEP-CNVCPPCV 80 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC---------CCC-CCccHHHH
Confidence 345577999999999999988743 2246778999999999999999998753210000 000 00000111
Q ss_pred HHHHHhcCCCCCCC--CC---ChhHHHHHHH-----ccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEc-Cch
Q 005191 258 QVLSKLLGENFDIG--TP---KIPQYIRDRL-----QRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTT-RDK 324 (709)
Q Consensus 258 ~ll~~l~~~~~~~~--~~---~~~~~l~~~L-----~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTT-R~~ 324 (709)
.+...-.......+ .. +-+..+.+.+ .++.-++|+|+++.. ...+.|+..+....+.+.+|++| ...
T Consensus 81 ~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~ 160 (576)
T PRK14965 81 EITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160 (576)
T ss_pred HHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChh
Confidence 11000000000000 00 0111222222 234458999999653 44566666665444566666555 434
Q ss_pred hhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc-hHHHHH
Q 005191 325 TILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP-LALQVL 385 (709)
Q Consensus 325 ~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP-LAL~~l 385 (709)
.+.... +....+++.+++.++....+...+-... -....+.+..|++.++|.. .++..+
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG--ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 443322 2235678999999998888776552222 1122456778889999876 444443
No 117
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.55 E-value=0.00015 Score=77.76 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=58.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh-cccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCC-------h
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ-KFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPK-------I 275 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-------~ 275 (709)
..+..+|+|++|+||||||+.+++.+.. +|+..+|+..+++.. ....++++.+...+-....+.+... .
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 3567889999999999999999998755 689999998666532 3466677776533211111111111 0
Q ss_pred hHHHHHH-HccCceEEEecCCCC
Q 005191 276 PQYIRDR-LQRMKVFIVLDDVNK 297 (709)
Q Consensus 276 ~~~l~~~-L~~kr~LLVLDdv~~ 297 (709)
.+.-+.. ..+++++|++|++..
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHH
Confidence 1111111 256899999999954
No 118
>CHL00176 ftsH cell division protein; Validated
Probab=97.52 E-value=0.00071 Score=78.43 Aligned_cols=173 Identities=17% Similarity=0.209 Sum_probs=97.1
Q ss_pred CCCCccccchhhhHHHhhh---hcc-------CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccccc
Q 005191 180 DSDGLIGLESHVEQVRSLL---AIG-------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKC 249 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L---~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~ 249 (709)
....++|.++..+++.+.+ ... ..-.+-+.++|++|+|||+||+.++...... |+. + +
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~-i---s--- 248 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS-I---S--- 248 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee-c---c---
Confidence 3456888877666665554 211 1124568999999999999999998865322 221 0 0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh----------------hhhhhhcCCCC--C
Q 005191 250 GGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG----------------QLEYFDGGLDR--F 311 (709)
Q Consensus 250 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~----------------~~~~l~~~l~~--~ 311 (709)
...+... ..+ .........+.......+++|+|||++... .+..++..+.. .
T Consensus 249 --~s~f~~~----~~g----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 249 --GSEFVEM----FVG----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred --HHHHHHH----hhh----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 0011110 000 000113333444556688999999996321 13334333321 1
Q ss_pred CCCeEEEEEcCchhhhhh-----cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcC
Q 005191 312 GPGSRIIVTTRDKTILER-----YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKG 377 (709)
Q Consensus 312 ~~gsrIIvTTR~~~v~~~-----~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gG 377 (709)
..+..||.||........ ...+..+.++..+.++-.+++..++...... .......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 345567777766433221 1234678899999999999998877332111 12335667777776
No 119
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.51 E-value=0.00059 Score=77.60 Aligned_cols=173 Identities=18% Similarity=0.237 Sum_probs=93.0
Q ss_pred CCCccccchhhhHHHhhhh---c-------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccC
Q 005191 181 SDGLIGLESHVEQVRSLLA---I-------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCG 250 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~ 250 (709)
-..++|.+...+++.+++. . +....+-+.++|++|+|||+||+.++......| +. + +
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-i---~---- 120 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-I---S---- 120 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-c---c----
Confidence 3567787776665554432 1 122345688999999999999999998643221 11 0 0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh----------------hhhhhhcCCCCC--C
Q 005191 251 GLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG----------------QLEYFDGGLDRF--G 312 (709)
Q Consensus 251 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~----------------~~~~l~~~l~~~--~ 312 (709)
...+. ....+. ........+.......+.+|+||+++... .+..++..+... .
T Consensus 121 -~~~~~----~~~~g~----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 121 -GSDFV----EMFVGV----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHHH----HHHhcc----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 01111 111000 00012333334445678999999995421 122233222211 2
Q ss_pred CCeEEEEEcCchhhhh-----hcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCC
Q 005191 313 PGSRIIVTTRDKTILE-----RYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGN 378 (709)
Q Consensus 313 ~gsrIIvTTR~~~v~~-----~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGl 378 (709)
.+..||.||....... ....+..++++..+.++-.+++..+........ ......+++.+.|.
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~ 259 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGF 259 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCC
Confidence 3455666776543221 112456789999999888888877663222111 12245777777763
No 120
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.51 E-value=0.0015 Score=67.72 Aligned_cols=200 Identities=16% Similarity=0.101 Sum_probs=111.3
Q ss_pred CCccccc---hhhhHHHhhhhcc-CCCceEEEEEccCCCchhHHHHHHHHHhhhcccc-----eEEEeeecccccccCCH
Q 005191 182 DGLIGLE---SHVEQVRSLLAIG-LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEG-----KYFMANVREESEKCGGL 252 (709)
Q Consensus 182 ~~~vGR~---~el~~L~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~-----~~~v~~~~~~~~~~~~l 252 (709)
+.+||-. .-++.|.++|... ....+.+.|+|.+|+|||++++++.+..-..++. -++.. ......+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v----q~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV----QMPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE----ecCCCCCh
Confidence 3455543 2345556666543 3446789999999999999999999865433321 12222 23334778
Q ss_pred HHHHHHHHHHhcCCCCCCCCCC-hhHHHHHHHcc-CceEEEecCCCCh-----hhhhhhhcCCCCCC---CCeEEEEEcC
Q 005191 253 VHLRNQVLSKLLGENFDIGTPK-IPQYIRDRLQR-MKVFIVLDDVNKY-----GQLEYFDGGLDRFG---PGSRIIVTTR 322 (709)
Q Consensus 253 ~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~-kr~LLVLDdv~~~-----~~~~~l~~~l~~~~---~gsrIIvTTR 322 (709)
..+...|+..++.......... ........++. +.=+||+|++.+. .+-..++..+...+ .=+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 8999999999976654443333 44445555554 4558999999642 12222222221112 2334556665
Q ss_pred chhhhhhc-----CcceEEEecCCChH-HHHHHhhhccc--c-cCCCChhhHHHHHHHHHHhcCCchHHHHH
Q 005191 323 DKTILERY-----GTHRIYEVEGLNCN-EALRLFCSCAF--K-ENHCPEDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 323 ~~~v~~~~-----~~~~~~~L~~L~~~-ea~~Lf~~~a~--~-~~~~~~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
+..-+-.. +....+.++....+ +...|+..... . .....-...+++..|...++|+.--+..+
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 44221111 12245666666554 34445432211 1 11112234678899999999987555443
No 121
>CHL00181 cbbX CbbX; Provisional
Probab=97.50 E-value=0.0027 Score=66.72 Aligned_cols=130 Identities=13% Similarity=0.150 Sum_probs=71.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc-c-cceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK-F-EGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDR 282 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 282 (709)
...+.++|++|+|||++|+.+++.+... + ...-|+. + + .. .+.....+.. .......+.+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-v---~-----~~----~l~~~~~g~~----~~~~~~~l~~- 120 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-V---T-----RD----DLVGQYIGHT----APKTKEVLKK- 120 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-e---c-----HH----HHHHHHhccc----hHHHHHHHHH-
Confidence 3457899999999999999998865332 1 1112332 0 1 11 1222221111 0001112222
Q ss_pred HccCceEEEecCCCCh-----------hhhhhhhcCCCCCCCCeEEEEEcCchhhhhh--------cCcceEEEecCCCh
Q 005191 283 LQRMKVFIVLDDVNKY-----------GQLEYFDGGLDRFGPGSRIIVTTRDKTILER--------YGTHRIYEVEGLNC 343 (709)
Q Consensus 283 L~~kr~LLVLDdv~~~-----------~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~--------~~~~~~~~L~~L~~ 343 (709)
...-+|+||+++.. +..+.+...+.....+.+||+++........ -.....+.+++++.
T Consensus 121 --a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 121 --AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred --ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 13459999999642 2334455544444456677777754322110 01235789999999
Q ss_pred HHHHHHhhhcc
Q 005191 344 NEALRLFCSCA 354 (709)
Q Consensus 344 ~ea~~Lf~~~a 354 (709)
+|..+++...+
T Consensus 199 ~el~~I~~~~l 209 (287)
T CHL00181 199 EELLQIAKIML 209 (287)
T ss_pred HHHHHHHHHHH
Confidence 99999987776
No 122
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.48 E-value=0.00021 Score=73.26 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=58.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh-cccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCC-------h
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ-KFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPK-------I 275 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-------~ 275 (709)
....++|.|++|+|||||++.+++.+.. +|+..+|+..+.+. ..+..++++.+...+-....+.+... .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 3568899999999999999999997654 58888888755442 14577787777443311111111111 1
Q ss_pred hHHHHHH-HccCceEEEecCCCC
Q 005191 276 PQYIRDR-LQRMKVFIVLDDVNK 297 (709)
Q Consensus 276 ~~~l~~~-L~~kr~LLVLDdv~~ 297 (709)
....... -.++++++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 1111211 247899999999954
No 123
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.42 E-value=0.011 Score=64.13 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=67.7
Q ss_pred ceEEEecCCCC-----------hhhhhhhhcCCCCCCCCeEEEEEcCchhhhhh----c--CcceEEEecCCChHHHHHH
Q 005191 287 KVFIVLDDVNK-----------YGQLEYFDGGLDRFGPGSRIIVTTRDKTILER----Y--GTHRIYEVEGLNCNEALRL 349 (709)
Q Consensus 287 r~LLVLDdv~~-----------~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~----~--~~~~~~~L~~L~~~ea~~L 349 (709)
+-+||+||... ..+|...+-. .+=.+||++|-+...... + ...+.+.|...+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 67999999832 1234333322 345588888877644332 2 2447789999999999999
Q ss_pred hhhcccccCCC------------------ChhhHHHHHHHHHHhcCCchHHHHHhhhhcC
Q 005191 350 FCSCAFKENHC------------------PEDLLKHSETAAHYAKGNPLALQVLGSSFHR 391 (709)
Q Consensus 350 f~~~a~~~~~~------------------~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~ 391 (709)
...+....... ...........+..+||-=.=|..+++.++.
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 98887432110 0123445677888899999999999998865
No 124
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0027 Score=66.52 Aligned_cols=172 Identities=21% Similarity=0.315 Sum_probs=99.4
Q ss_pred CCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccC
Q 005191 182 DGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCG 250 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~ 250 (709)
...=|-++++++|.+.... +-+.++=|.++|++|.|||-||++++++.... |+..++.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvgS------ 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVGS------ 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEeccH------
Confidence 3455778888888776642 11346788999999999999999999986544 3432211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH-ccCceEEEecCCCChh----------------hhhhhhcCCCCC--
Q 005191 251 GLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL-QRMKVFIVLDDVNKYG----------------QLEYFDGGLDRF-- 311 (709)
Q Consensus 251 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LLVLDdv~~~~----------------~~~~l~~~l~~~-- 311 (709)
++....-++.. .+...+.+.. .+.+.+|++|.++... .+-+|+..+.-+
T Consensus 220 -------ElVqKYiGEGa-----RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 -------ELVQKYIGEGA-----RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred -------HHHHHHhccch-----HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 22222211110 1333333333 3578999999985211 122333444333
Q ss_pred CCCeEEEEEcCchhhhh-----hcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 312 GPGSRIIVTTRDKTILE-----RYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 312 ~~gsrIIvTTR~~~v~~-----~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
..+.+||..|.-.+++. .-..++.++++.-+.+.-.++|.-|+.+-....+- -.+.+++.|.|.-
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv---d~e~la~~~~g~s 357 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV---DLELLARLTEGFS 357 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc---CHHHHHHhcCCCc
Confidence 34678888776554332 22345788888666666677787776332221111 1456777777764
No 125
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.38 E-value=0.00046 Score=74.42 Aligned_cols=91 Identities=14% Similarity=0.219 Sum_probs=60.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCC---hhHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPK---IPQYI 279 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~---~~~~l 279 (709)
....++|+|++|.|||||++.+++.+..+ |+..+|+..+++. .....++++.+...+-....+.+... ....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 45788999999999999999999987665 8888888855442 24577888888655422222211111 11111
Q ss_pred ----HHH-HccCceEEEecCCCC
Q 005191 280 ----RDR-LQRMKVFIVLDDVNK 297 (709)
Q Consensus 280 ----~~~-L~~kr~LLVLDdv~~ 297 (709)
+.. -.+++++|++|++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhH
Confidence 111 357899999999954
No 126
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.37 E-value=0.0059 Score=64.56 Aligned_cols=166 Identities=16% Similarity=0.217 Sum_probs=99.9
Q ss_pred CCCccccchhhhHHHhhhhccCCC-ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHH
Q 005191 181 SDGLIGLESHVEQVRSLLAIGLPD-VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQV 259 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~l 259 (709)
.+.+.+|+.++..+..++...+.. +..|.|+|-+|.|||.+.+++.+... ...+|+..+. ......+...|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~e-----cft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCVE-----CFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehHH-----hccHHHHHHHH
Confidence 457889999999999999765543 45668999999999999999998762 2346776332 25667778888
Q ss_pred HHHhc-CCCCC-CCCC--C----hhHHHHH--HHc--cCceEEEecCCCChhhhhhh-----hcCCCCCCCCeEEEEEcC
Q 005191 260 LSKLL-GENFD-IGTP--K----IPQYIRD--RLQ--RMKVFIVLDDVNKYGQLEYF-----DGGLDRFGPGSRIIVTTR 322 (709)
Q Consensus 260 l~~l~-~~~~~-~~~~--~----~~~~l~~--~L~--~kr~LLVLDdv~~~~~~~~l-----~~~l~~~~~gsrIIvTTR 322 (709)
+.+.+ ..... .... + ....+.+ ... ++.++|||||++...+.+.. ............+|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 88774 11111 1111 1 1222232 122 35899999999764433221 111110112233444443
Q ss_pred ch---hhhhhcC--cceEEEecCCChHHHHHHhhhcc
Q 005191 323 DK---TILERYG--THRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 323 ~~---~v~~~~~--~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
.. .-...++ ...++..+.-+.+|..+++.+.-
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 32 1121122 23467788899999999986544
No 127
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.0031 Score=68.47 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=82.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
....+.|+|..|.|||.|++++.+......+...++. .........++..+... ....+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y---------~~se~f~~~~v~a~~~~--------~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY---------LTSEDFTNDFVKALRDN--------EMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe---------ccHHHHHHHHHHHHHhh--------hHHHHHHhh
Confidence 3678999999999999999999999887776444443 11223444444444221 234455555
Q ss_pred ccCceEEEecCCCChh---h-hhhhhcCCCC-CCCCeEEEEEcCch---------hhhhhcCcceEEEecCCChHHHHHH
Q 005191 284 QRMKVFIVLDDVNKYG---Q-LEYFDGGLDR-FGPGSRIIVTTRDK---------TILERYGTHRIYEVEGLNCNEALRL 349 (709)
Q Consensus 284 ~~kr~LLVLDdv~~~~---~-~~~l~~~l~~-~~~gsrIIvTTR~~---------~v~~~~~~~~~~~L~~L~~~ea~~L 349 (709)
.-=++++||++-.. . -+.+...+.. ...|-.||+|++.. .+...+...-++++.+++.+.....
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 34488999995311 1 1222222211 12344899998554 2223334557899999999999999
Q ss_pred hhhcc
Q 005191 350 FCSCA 354 (709)
Q Consensus 350 f~~~a 354 (709)
+.+.+
T Consensus 253 L~kka 257 (408)
T COG0593 253 LRKKA 257 (408)
T ss_pred HHHHH
Confidence 98866
No 128
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.0062 Score=61.27 Aligned_cols=179 Identities=13% Similarity=0.094 Sum_probs=99.6
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHH
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDR 282 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 282 (709)
++.+++.++|.-|.|||.+.+.....+.+.--+.+.+. ........+...+...+.. ............+.+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~-~p~~~~~~~~e~~~~~ 121 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLES-QPKVNVNAVLEQIDRE 121 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhcc-CccchhHHHHHHHHHH
Confidence 45679999999999999999955554332222222222 2224445566666666644 2111111122222222
Q ss_pred H-----ccCc-eEEEecCCCC--hhhhhhh---hcCCCCCCCCeEEEEEcCch-------hhhhhc-CcceE-EEecCCC
Q 005191 283 L-----QRMK-VFIVLDDVNK--YGQLEYF---DGGLDRFGPGSRIIVTTRDK-------TILERY-GTHRI-YEVEGLN 342 (709)
Q Consensus 283 L-----~~kr-~LLVLDdv~~--~~~~~~l---~~~l~~~~~gsrIIvTTR~~-------~v~~~~-~~~~~-~~L~~L~ 342 (709)
| ++++ ..+++|+..+ .+.++.+ ...-......-+|+..-..+ .+.... ....+ |+++|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 2 3455 9999999953 3334333 32222222222344333221 011111 11233 8999999
Q ss_pred hHHHHHHhhhcccccCCCCh-hhHHHHHHHHHHhcCCchHHHHHhhh
Q 005191 343 CNEALRLFCSCAFKENHCPE-DLLKHSETAAHYAKGNPLALQVLGSS 388 (709)
Q Consensus 343 ~~ea~~Lf~~~a~~~~~~~~-~~~~~~~~Iv~~~gGlPLAL~~la~~ 388 (709)
.++...++..+..+...+.+ -..+....|.....|.|.+|..++..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999888877754433332 33456778889999999999887653
No 129
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.35 E-value=0.0014 Score=73.68 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=91.7
Q ss_pred CCCccccchhhhHHHhhh---hc-----cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCH
Q 005191 181 SDGLIGLESHVEQVRSLL---AI-----GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGL 252 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L---~~-----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l 252 (709)
...+.|.+...+.+.... .. +-..++-|.++|++|+|||.+|+.+++...-.| +......
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~-------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGK-------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHH--------
Confidence 345677765555554321 11 123457789999999999999999998754322 1111110
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh--------------hhhhhhcCCCCCCCCeEEE
Q 005191 253 VHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG--------------QLEYFDGGLDRFGPGSRII 318 (709)
Q Consensus 253 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~--------------~~~~l~~~l~~~~~gsrII 318 (709)
+.....+ .........+...-...+++|++|+++..- .+..++..+.....+.-||
T Consensus 295 ------l~~~~vG----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 295 ------LFGGIVG----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred ------hcccccC----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 0000000 000002222222223578999999996321 0112222222223445566
Q ss_pred EEcCchhhhh-h----cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 319 VTTRDKTILE-R----YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 319 vTTR~~~v~~-~----~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
.||.+..... . ...+..+.++..+.++-.++|..+..+.. +..........+++.+.|.-
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~-~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR-PKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC-CCcccccCHHHHHhhcCCCC
Confidence 7776553222 1 13457788999999999999987763322 11101122456666666653
No 130
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.0057 Score=65.02 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=62.2
Q ss_pred CceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch-hhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCC
Q 005191 286 MKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK-TILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCP 361 (709)
Q Consensus 286 kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~-~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~ 361 (709)
+.=++|+|+++. .+.-+.++..+..-.+++.+|++|.+. .+++.. +.-..+.+.+++.+++.+.+.... .+
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~~ 187 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----VS 187 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----CC
Confidence 456899999975 445566666665545677777777654 344332 233678999999999998886531 11
Q ss_pred hhhHHHHHHHHHHhcCCchHHHHHh
Q 005191 362 EDLLKHSETAAHYAKGNPLALQVLG 386 (709)
Q Consensus 362 ~~~~~~~~~Iv~~~gGlPLAL~~la 386 (709)
...+..++..++|.|+....+.
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1235678999999998665443
No 131
>PRK12377 putative replication protein; Provisional
Probab=97.35 E-value=0.0039 Score=63.90 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=29.3
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
...+.|+|.+|+|||.||.++++.+..+...+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457899999999999999999998876654455554
No 132
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.30 E-value=0.00083 Score=61.31 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=27.2
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+.+.|+|++|+||||+++.++..+.......+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 57899999999999999999998766543334443
No 133
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.29 E-value=0.00028 Score=66.64 Aligned_cols=64 Identities=22% Similarity=0.383 Sum_probs=55.0
Q ss_pred eEEecCCccccc-CchHHHHHHHHHhC-CCceEEcC-CCCC--CCcccHHHHHHHHhccceeEEeccCc
Q 005191 7 DVFLSFRGEDTR-DNFLSHLVVALQEK-KIKTFIDE-ELTR--GDQISPALVKAIEESMISVIIFSKNY 70 (709)
Q Consensus 7 dvFiS~~~~D~~-~~f~~~L~~~L~~~-g~~~~~d~-~~~~--g~~~~~~i~~ai~~S~~~ivvlS~~y 70 (709)
-|||||++.... ..+|..|++.|++. |+.|.+|. +... +..+..++.+++++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 499999986533 36799999999999 99999998 6643 77889999999999999999999655
No 134
>PRK08181 transposase; Validated
Probab=97.28 E-value=0.0011 Score=68.78 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=27.6
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.-+.|+|++|+|||.||..+++....+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999998765544445554
No 135
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.26 E-value=0.0024 Score=76.29 Aligned_cols=172 Identities=22% Similarity=0.249 Sum_probs=94.4
Q ss_pred CCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccC
Q 005191 182 DGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCG 250 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~ 250 (709)
..+.|.+...++|.+.+.. +-...+-+.++|++|+|||+||+.+++.....| +.....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~------- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGP------- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehH-------
Confidence 4567877777777665531 112345688999999999999999999865333 111000
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCC-hhHHHHHHHccCceEEEecCCCCh--------------hhhhhhhcCCCC--CCC
Q 005191 251 GLVHLRNQVLSKLLGENFDIGTPK-IPQYIRDRLQRMKVFIVLDDVNKY--------------GQLEYFDGGLDR--FGP 313 (709)
Q Consensus 251 ~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LLVLDdv~~~--------------~~~~~l~~~l~~--~~~ 313 (709)
.++....+. ... +...+...-...+.+|+||+++.. .....++..+.. ...
T Consensus 522 -------~l~~~~vGe-----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 -------EILSKWVGE-----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred -------HHhhcccCc-----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 111111000 001 222222333456899999998532 112333333321 123
Q ss_pred CeEEEEEcCchhhhhh-----cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 314 GSRIIVTTRDKTILER-----YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 314 gsrIIvTTR~~~v~~~-----~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
+..||.||..+..... ...+..+.++..+.++-.++|..+.-+....+ . .....+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~-~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE-D--VDLEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc-c--CCHHHHHHHcCCCC
Confidence 5556777765543321 12457788999999998999876552221111 1 11456777777654
No 136
>PRK10536 hypothetical protein; Provisional
Probab=97.21 E-value=0.0012 Score=67.23 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=74.9
Q ss_pred CCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH-h-hhcccceEEEeeecccccc----cCCHHH
Q 005191 181 SDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ-F-SQKFEGKYFMANVREESEK----CGGLVH 254 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~v~~~~~~~~~----~~~l~~ 254 (709)
...+.+|......+..++.. ...+.+.|++|.|||+||..++.+ + ...|...+.....-...+. +.++.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 35577888888888888763 349999999999999999998884 3 3445444333211111110 111211
Q ss_pred ----HHHHHHHHh----cCCCCC-C--CCCC-hhHHHHHHHccCc---eEEEecCCCC--hhhhhhhhcCCCCCCCCeEE
Q 005191 255 ----LRNQVLSKL----LGENFD-I--GTPK-IPQYIRDRLQRMK---VFIVLDDVNK--YGQLEYFDGGLDRFGPGSRI 317 (709)
Q Consensus 255 ----l~~~ll~~l----~~~~~~-~--~~~~-~~~~l~~~L~~kr---~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrI 317 (709)
...-+...+ +..... . .... +.-.=..+++++. -+||+|.+.+ ..+...++.. .+.+|++
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~ 206 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEE
Confidence 122222222 110000 0 0000 0000112455554 4999999965 4455666544 4789999
Q ss_pred EEEcCch
Q 005191 318 IVTTRDK 324 (709)
Q Consensus 318 IvTTR~~ 324 (709)
|+|--..
T Consensus 207 v~~GD~~ 213 (262)
T PRK10536 207 IVNGDIT 213 (262)
T ss_pred EEeCChh
Confidence 9987654
No 137
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.20 E-value=0.002 Score=76.89 Aligned_cols=174 Identities=16% Similarity=0.207 Sum_probs=92.4
Q ss_pred CCCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccccc
Q 005191 181 SDGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKC 249 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~ 249 (709)
.+.+.|.+..++.+.+++.. +-...+-+.|+|++|+|||+||+.+++.....| +.+. ...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~----- 247 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPE----- 247 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHH-----
Confidence 34588999999988887642 112346788999999999999999998764332 1111 110
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh-------------hhhhhhcCCCCC-CCCe
Q 005191 250 GGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG-------------QLEYFDGGLDRF-GPGS 315 (709)
Q Consensus 250 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~-------------~~~~l~~~l~~~-~~gs 315 (709)
+. .... ......+...+.....+.+.+|+||+++... ....+...+... ..+.
T Consensus 248 -----i~----~~~~----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 248 -----IM----SKYY----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred -----Hh----cccc----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 00 0000 0000002223333334567899999985321 122233322211 2233
Q ss_pred EEEE-EcCchh-hhhhc----CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 316 RIIV-TTRDKT-ILERY----GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 316 rIIv-TTR~~~-v~~~~----~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
.++| ||.... +.... .....+.++..+.++-.+++..+.-...... ......+++.+.|.-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 3444 554432 11111 1235678888888888888875542111111 122566777777764
No 138
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.018 Score=61.16 Aligned_cols=90 Identities=12% Similarity=0.160 Sum_probs=62.2
Q ss_pred CceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch-hhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCC
Q 005191 286 MKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK-TILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCP 361 (709)
Q Consensus 286 kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~-~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~ 361 (709)
+.=++|+|+++. .+..+.++..+..-.+++.+|++|.+. .+++.. +.-..+.+.+++.+++.+.+.... .+
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~~ 182 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-----IT 182 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC-----Cc
Confidence 445889999975 456677777776556777777766654 444433 233678999999999999886542 11
Q ss_pred hhhHHHHHHHHHHhcCCchHHHHH
Q 005191 362 EDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 362 ~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
....++..++|.|+....+
T Consensus 183 -----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 -----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -----hHHHHHHHcCCCHHHHHHH
Confidence 1356788999999976555
No 139
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0086 Score=65.57 Aligned_cols=130 Identities=20% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHH
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDR 282 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 282 (709)
.....+.+.|++|+|||+||..++.. +.|+.+-.++ .+..-++.+-.+-.. ......+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS-----pe~miG~sEsaKc~~--------------i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS-----PEDMIGLSESAKCAH--------------IKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC-----hHHccCccHHHHHHH--------------HHHHHHHh
Confidence 45678889999999999999999875 6788665554 111011111110000 11122223
Q ss_pred HccCceEEEecCCCChhhhh------------hhh---cCCCCCCCCeEEEEEcCchhhhhhcCc----ceEEEecCCCh
Q 005191 283 LQRMKVFIVLDDVNKYGQLE------------YFD---GGLDRFGPGSRIIVTTRDKTILERYGT----HRIYEVEGLNC 343 (709)
Q Consensus 283 L~~kr~LLVLDdv~~~~~~~------------~l~---~~l~~~~~gsrIIvTTR~~~v~~~~~~----~~~~~L~~L~~ 343 (709)
-+..--.||+||++..-+|- .++ ...+..+..--|+-||....++..++. ...|.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 34455689999996543332 222 222322334445667777788887752 35789999987
Q ss_pred -HHHHHHhhhc
Q 005191 344 -NEALRLFCSC 353 (709)
Q Consensus 344 -~ea~~Lf~~~ 353 (709)
++..+.++..
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 6677776554
No 140
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.14 E-value=0.0013 Score=75.88 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=43.4
Q ss_pred CCCCCCccccchhhhHHHhhhhccC---CCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGL---PDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
|.....++|-+..++++..++.... ...+++.|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556779999999999999987532 3357899999999999999999998653
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.13 E-value=0.0042 Score=73.98 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=38.6
Q ss_pred CCCccccchhhhHHHhhhhcc------CCC-ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 181 SDGLIGLESHVEQVRSLLAIG------LPD-VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...++|-+..++.+.+.+... .+. ...+.++|++|+|||.||+.+++.+
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 357889998888888877631 112 3467899999999999999999876
No 142
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.011 Score=63.44 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=60.2
Q ss_pred CceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCc-hhhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCC
Q 005191 286 MKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRD-KTILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCP 361 (709)
Q Consensus 286 kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~-~~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~ 361 (709)
+.=++|+|+++. .+..+.++..+..-.+++.+|++|.+ ..+++.. +.-..+.+.+++.++..+.+.... . +
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~-~ 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V-A 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-C
Confidence 445888999974 55677777777665677766666555 4444332 223688999999999999987642 1 1
Q ss_pred hhhHHHHHHHHHHhcCCchHHHHHh
Q 005191 362 EDLLKHSETAAHYAKGNPLALQVLG 386 (709)
Q Consensus 362 ~~~~~~~~~Iv~~~gGlPLAL~~la 386 (709)
+ ...++..++|.|+....+.
T Consensus 207 ~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 2235778899997554443
No 143
>PRK09183 transposase/IS protein; Provisional
Probab=97.11 E-value=0.0015 Score=67.65 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...+.|+|++|+|||+||..++......
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 3567899999999999999998865443
No 144
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.017 Score=61.59 Aligned_cols=173 Identities=10% Similarity=0.095 Sum_probs=95.6
Q ss_pred hHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCC-
Q 005191 192 EQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDI- 270 (709)
Q Consensus 192 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~- 270 (709)
+.|.+.+..+ .-.+.+.++|+.|+||+++|..++..+--.-+.. ... .+.-...+.+.......-...
T Consensus 12 ~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~------~~~----Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 12 QQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG------DQP----CGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC------CCC----CCCCHHHHHHhcCCCCCEEEEc
Confidence 3444444422 1257888999999999999999998653211000 000 000011111111100000000
Q ss_pred --CCCC-hhHHHH---HHH-----ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch-hhhhhc-CcceE
Q 005191 271 --GTPK-IPQYIR---DRL-----QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK-TILERY-GTHRI 335 (709)
Q Consensus 271 --~~~~-~~~~l~---~~L-----~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~-~v~~~~-~~~~~ 335 (709)
.... .++.++ +.+ .+++=++|+|+++. ......++..+..-.+++.+|++|.+. .+++.. +.-..
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 0001 233333 232 23456888999975 446677777776656777777777665 444332 23368
Q ss_pred EEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 336 YEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 336 ~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
+.+.+++.+++.+.+..... . . ...+...+..++|.|+..
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~---~-~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSS---A-E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhc---c-C---hHHHHHHHHHcCCCHHHH
Confidence 89999999999998876541 1 1 112556788899999643
No 145
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.013 Score=62.88 Aligned_cols=174 Identities=12% Similarity=0.055 Sum_probs=95.1
Q ss_pred hHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCC----C
Q 005191 192 EQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGE----N 267 (709)
Q Consensus 192 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~----~ 267 (709)
+.+.+.+..+ .-.+.+.++|+.|+||+++|..++..+--.-+.. ... .+.-.-.+.+....... .
T Consensus 12 ~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~---------~~~-Cg~C~sC~~~~~g~HPD~~~i~ 80 (334)
T PRK07993 12 EQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQG---------HKS-CGHCRGCQLMQAGTHPDYYTLT 80 (334)
T ss_pred HHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCC-CCCCHHHHHHHcCCCCCEEEEe
Confidence 3444544432 2367888999999999999999998652210000 000 00000011110000000 0
Q ss_pred CCCCCCC-hhHH---HHHHH-----ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch-hhhhhc-Ccce
Q 005191 268 FDIGTPK-IPQY---IRDRL-----QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK-TILERY-GTHR 334 (709)
Q Consensus 268 ~~~~~~~-~~~~---l~~~L-----~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~-~v~~~~-~~~~ 334 (709)
++..... .++. +.+.+ .+++=++|+|+++. .+..+.++..+..-.+++.+|++|.+. .+++.. +.-.
T Consensus 81 p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 81 PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 0000000 2222 22322 24556899999975 446677777776556677777777664 344332 2235
Q ss_pred EEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHH
Q 005191 335 IYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQ 383 (709)
Q Consensus 335 ~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~ 383 (709)
.+.+.+++.+++.+.+.... + .+ .+.+..++..++|.|....
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~-~---~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREV-T---MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccCCCCCHHHHHHHHHHcc-C---CC---HHHHHHHHHHcCCCHHHHH
Confidence 68999999999998886542 1 11 2236678899999996443
No 146
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.011 Score=68.94 Aligned_cols=153 Identities=14% Similarity=0.197 Sum_probs=87.2
Q ss_pred CCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc-ccc-----eEEEeeecccccccCCHH
Q 005191 180 DSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEG-----KYFMANVREESEKCGGLV 253 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~-----~~~v~~~~~~~~~~~~l~ 253 (709)
.-++++||+.|++.+.+.|.....+.+ .++|.+|+|||+++.-++.++... .+. .++-.+
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD------------ 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD------------ 233 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec------------
Confidence 346699999999999999986543333 357999999999999999986443 221 111111
Q ss_pred HHHHHHHHHhcCCCCCCCCCChhHH-HHHHHccCceEEEecCCCC-----------hhhhhhhhcCCCCCCCCeEEEEEc
Q 005191 254 HLRNQVLSKLLGENFDIGTPKIPQY-IRDRLQRMKVFIVLDDVNK-----------YGQLEYFDGGLDRFGPGSRIIVTT 321 (709)
Q Consensus 254 ~l~~~ll~~l~~~~~~~~~~~~~~~-l~~~L~~kr~LLVLDdv~~-----------~~~~~~l~~~l~~~~~gsrIIvTT 321 (709)
+..-..+......-++.... +.+.-+..+++|++|.+.. .+.-+-+.+.+.. +.--.|=.||
T Consensus 234 -----~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT 307 (786)
T COG0542 234 -----LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATT 307 (786)
T ss_pred -----HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEecc
Confidence 11111111111122222222 2222234589999999853 2223334455432 2223344555
Q ss_pred Cchhhhhh-------cCcceEEEecCCChHHHHHHhhhc
Q 005191 322 RDKTILER-------YGTHRIYEVEGLNCNEALRLFCSC 353 (709)
Q Consensus 322 R~~~v~~~-------~~~~~~~~L~~L~~~ea~~Lf~~~ 353 (709)
-++ .-.. ....+.+.+...+.+++.+.++..
T Consensus 308 ~~E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDE-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHH-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 443 1111 123467889999999999988644
No 147
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.06 E-value=0.0013 Score=72.24 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=42.0
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh--cccceEEEe
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ--KFEGKYFMA 240 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~v~ 240 (709)
..+++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.+.. .+....|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 4577888889999888873 357788999999999999999997643 344444444
No 148
>PRK06526 transposase; Provisional
Probab=97.06 E-value=0.0011 Score=68.35 Aligned_cols=28 Identities=29% Similarity=0.115 Sum_probs=23.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
..-+.|+|++|+|||+||..+.......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 4568999999999999999999876544
No 149
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.03 E-value=0.0028 Score=64.80 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=28.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
...+.++|.+|+|||+||..+++.+...-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457889999999999999999998766544455553
No 150
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.99 E-value=0.00055 Score=66.62 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=26.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..-+.|+|.+|+|||.||..+++....+--.+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356899999999999999999997666444455554
No 151
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.018 Score=64.49 Aligned_cols=188 Identities=18% Similarity=0.166 Sum_probs=109.2
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....++|-+.-...|.+.+..+. -.......|+-|+||||+|+-++.-+--.-. . ...+ .+--...+.
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-----~----~~eP-C~~C~~Ck~ 81 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENG-----P----TAEP-CGKCISCKE 81 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCC-----C----CCCc-chhhhhhHh
Confidence 345668999999999999887542 2566778999999999999999886421100 0 0000 111111111
Q ss_pred HHHHhcCCCCCCCC--CChhHHHHHHH--------ccCceEEEecCCC--ChhhhhhhhcCCCCCCCCeEEEEEcCchh-
Q 005191 259 VLSKLLGENFDIGT--PKIPQYIRDRL--------QRMKVFIVLDDVN--KYGQLEYFDGGLDRFGPGSRIIVTTRDKT- 325 (709)
Q Consensus 259 ll~~l~~~~~~~~~--~~~~~~l~~~L--------~~kr~LLVLDdv~--~~~~~~~l~~~l~~~~~gsrIIvTTR~~~- 325 (709)
+...-......++. ...++.+++.. .++.=+.|+|.|+ +...+..++..+..-.+....|+.|.+..
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~K 161 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQK 161 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCc
Confidence 11110000001111 11333344333 2345589999996 56688999888876566667677666653
Q ss_pred hhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 326 ILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 326 v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
+... .+....|.++.++.++-...+...+-... -....+...-|++..+|..
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIARAAEGSL 214 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHHhcC--CccCHHHHHHHHHHcCCCh
Confidence 2221 23346789999999988888877763322 1223345566666666644
No 152
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0053 Score=68.31 Aligned_cols=93 Identities=20% Similarity=0.347 Sum_probs=60.8
Q ss_pred CCCccccchhhhHHHhhhhcc----------CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccC
Q 005191 181 SDGLIGLESHVEQVRSLLAIG----------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCG 250 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~ 250 (709)
...+=|.+..+.+|.+++..- -..++-|.++|++|+|||.||++++.++.-.| +. .+.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isAp-- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISAP-- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecch--
Confidence 456789999999998877531 12368899999999999999999999864433 22 1111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCC-hhHHHHHHHccCceEEEecCCC
Q 005191 251 GLVHLRNQVLSKLLGENFDIGTPK-IPQYIRDRLQRMKVFIVLDDVN 296 (709)
Q Consensus 251 ~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LLVLDdv~ 296 (709)
++++.+.++ .++ +.+.+.+.-..-++++++|+++
T Consensus 258 -------eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 -------EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred -------hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeeccc
Confidence 222222111 111 4444444556689999999996
No 153
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.016 Score=62.15 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=84.9
Q ss_pred ccc-cchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc--cceEEEeeecccccccCCHHHHHHHHH
Q 005191 184 LIG-LESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF--EGKYFMANVREESEKCGGLVHLRNQVL 260 (709)
Q Consensus 184 ~vG-R~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~v~~~~~~~~~~~~l~~l~~~ll 260 (709)
++| -+.-++.|...+..+ .-.+...++|+.|+|||++|..+++.+-..- .... .+.-...+.+.
T Consensus 7 i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~------------cg~C~~c~~~~ 73 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP------------CGTCTNCKRID 73 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC------------CCcCHHHHHHh
Confidence 455 445566666666533 2357789999999999999999988753210 0000 00000000000
Q ss_pred HHhc-------CCCCCCCCCChhHHHHHHH-----ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCchh-
Q 005191 261 SKLL-------GENFDIGTPKIPQYIRDRL-----QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDKT- 325 (709)
Q Consensus 261 ~~l~-------~~~~~~~~~~~~~~l~~~L-----~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~~- 325 (709)
.... .....+. .+.+..+.+.+ .+.+=++|+|+++. .+..+.++..+..-.+++.+|++|.+..
T Consensus 74 ~~~hpD~~~i~~~~~~i~-id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIK-KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred cCCCCCEEEeccccccCC-HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 0000 0000000 00111122222 23455799999964 4456667766665566777777776543
Q ss_pred hhhhc-CcceEEEecCCChHHHHHHhhhc
Q 005191 326 ILERY-GTHRIYEVEGLNCNEALRLFCSC 353 (709)
Q Consensus 326 v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~ 353 (709)
+.+.. +....+++.+++.++..+.+...
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 33322 23468899999999998888653
No 154
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0034 Score=71.30 Aligned_cols=160 Identities=18% Similarity=0.251 Sum_probs=89.6
Q ss_pred CCccccchhhhHHHhhhhc----cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 182 DGLIGLESHVEQVRSLLAI----GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
..-+|.++-.+.+.+.|.- ..-...+++++|+||+|||+|++.+++-+...|-. + .++...+. ..+..-.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~---sLGGvrDE-AEIRGHRR 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR-I---SLGGVRDE-AEIRGHRR 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE-E---ecCccccH-HHhccccc
Confidence 4678999999999998853 22346899999999999999999999987666521 1 12222221 11111111
Q ss_pred HHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh------hhhhhhcCCCC------------CC-CCeEE-
Q 005191 258 QVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG------QLEYFDGGLDR------------FG-PGSRI- 317 (709)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~------~~~~l~~~l~~------------~~-~gsrI- 317 (709)
..+.++ ....++.+++. +.++-|++||.++... -..+++..+.. .. .=|.|
T Consensus 398 TYIGam--------PGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 398 TYIGAM--------PGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccccC--------ChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 111111 00133333322 4467789999996321 11222222210 00 11333
Q ss_pred EEEcCch-h-h-hhhcCcceEEEecCCChHHHHHHhhhccc
Q 005191 318 IVTTRDK-T-I-LERYGTHRIYEVEGLNCNEALRLFCSCAF 355 (709)
Q Consensus 318 IvTTR~~-~-v-~~~~~~~~~~~L~~L~~~ea~~Lf~~~a~ 355 (709)
.|||-|. + + .+.++...++++.+.+.+|-.++-.++..
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 3444433 2 1 22234457999999999999988877763
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.88 E-value=0.0046 Score=74.83 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=40.5
Q ss_pred CCCccccchhhhHHHhhhhccC------CC-ceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 181 SDGLIGLESHVEQVRSLLAIGL------PD-VRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~------~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...++|.+..++.+...+.... .. ...+.+.|++|+|||++|+.++..+..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3578999999999998886421 11 357889999999999999999987644
No 156
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.85 E-value=0.0032 Score=62.44 Aligned_cols=111 Identities=12% Similarity=0.146 Sum_probs=64.4
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHcc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQR 285 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 285 (709)
.++.|.|++|.||||++..+...+.......++...- + ...........+...............++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~-----~---~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED-----P---IEFVHESKRSLINQREVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC-----C---ccccccCccceeeecccCCCccCHHHHHHHHhcC
Confidence 3789999999999999999888766544444443211 0 0000000000011111111122366778888888
Q ss_pred CceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchhhh
Q 005191 286 MKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKTIL 327 (709)
Q Consensus 286 kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~ 327 (709)
.+=++++|++.+.+.+....... ..|..++.|+......
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 88899999998777665544332 3455677777655443
No 157
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.83 E-value=0.013 Score=58.43 Aligned_cols=57 Identities=19% Similarity=0.319 Sum_probs=43.0
Q ss_pred CCCCCccccchhhhHHHhhhhc--cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccc
Q 005191 179 SDSDGLIGLESHVEQVRSLLAI--GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEG 235 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 235 (709)
..-..++|-+...+.|.+-... ..-...-|.+||.-|+|||+|++++.+.+.+....
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 3445689999888887764432 12235678899999999999999999998877655
No 158
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.82 E-value=0.0011 Score=61.54 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEccCCCchhHHHHHHHHHh
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (709)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 159
>PRK06921 hypothetical protein; Provisional
Probab=96.82 E-value=0.0017 Score=67.52 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=29.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEEe
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFMA 240 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v~ 240 (709)
...+.++|.+|+|||.||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987765 44455655
No 160
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0045 Score=63.93 Aligned_cols=36 Identities=19% Similarity=0.400 Sum_probs=29.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh----hhcccceEEEe
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF----SQKFEGKYFMA 240 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~f~~~~~v~ 240 (709)
.|+|.++|+||.|||+|++++++++ .++|.....+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 5899999999999999999999964 44565555554
No 161
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.81 E-value=0.015 Score=55.68 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=71.9
Q ss_pred cchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc--------------------ccceEEEeeecccc
Q 005191 187 LESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK--------------------FEGKYFMANVREES 246 (709)
Q Consensus 187 R~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------f~~~~~v~~~~~~~ 246 (709)
-+...+.|.+.+..+ .-...+.++|+.|+||+++|..+++.+-.. ++...++..... .
T Consensus 2 q~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~ 79 (162)
T PF13177_consen 2 QEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK-K 79 (162)
T ss_dssp -HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-S
T ss_pred cHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-c
Confidence 344556666666533 225678999999999999999999864221 233333321100 0
Q ss_pred cccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 247 EKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 247 ~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
.. ....++ +.+...+.... ..++.=++|+||++. .+....++..+.....++.+|++|++.
T Consensus 80 ~~-i~i~~i-r~i~~~~~~~~---------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 80 KS-IKIDQI-REIIEFLSLSP---------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SS-BSHHHH-HHHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred ch-hhHHHH-HHHHHHHHHHH---------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 00 111111 12222221111 023456899999975 556677776666657788998888876
Q ss_pred h-hhhhc-CcceEEEecCCC
Q 005191 325 T-ILERY-GTHRIYEVEGLN 342 (709)
Q Consensus 325 ~-v~~~~-~~~~~~~L~~L~ 342 (709)
. +.... +.-..+.+.+|+
T Consensus 143 ~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 143 SKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGS-HHHHTTSEEEEE----
T ss_pred HHChHHHHhhceEEecCCCC
Confidence 4 33322 233566777664
No 162
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.80 E-value=0.0039 Score=64.29 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=45.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
+..-+.++|.+|+|||.||.++.+++...--.+.|+. ..++..++....... .....+.+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~-----------~~el~~~Lk~~~~~~-------~~~~~l~~~l 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT-----------APDLLSKLKAAFDEG-------RLEEKLLREL 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcC-------chHHHHHHHh
Confidence 4567889999999999999999999884333344443 234555544443321 1222233322
Q ss_pred ccCceEEEecCCC
Q 005191 284 QRMKVFIVLDDVN 296 (709)
Q Consensus 284 ~~kr~LLVLDdv~ 296 (709)
. +-=||||||+-
T Consensus 166 ~-~~dlLIiDDlG 177 (254)
T COG1484 166 K-KVDLLIIDDIG 177 (254)
T ss_pred h-cCCEEEEeccc
Confidence 2 23489999994
No 163
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.79 E-value=0.0052 Score=65.14 Aligned_cols=99 Identities=15% Similarity=0.243 Sum_probs=56.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ 284 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 284 (709)
..-+.|+|..|+|||.||.++++.+..+-..+.|+. ...+...+-...... .....+ +.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~~~~-------~~~~~l-~~l- 215 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSISDG-------SVKEKI-DAV- 215 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHHhcC-------cHHHHH-HHh-
Confidence 467889999999999999999998866544445554 123444443333211 112222 222
Q ss_pred cCceEEEecCCC--Chhhhh--hhhcCC-C-CCCCCeEEEEEcCc
Q 005191 285 RMKVFIVLDDVN--KYGQLE--YFDGGL-D-RFGPGSRIIVTTRD 323 (709)
Q Consensus 285 ~kr~LLVLDdv~--~~~~~~--~l~~~l-~-~~~~gsrIIvTTR~ 323 (709)
.+-=||||||+. ....|. .++..+ . ....+..+|+||--
T Consensus 216 ~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 216 KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 245689999994 334443 233322 1 11245567778754
No 164
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.012 Score=66.59 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=85.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ 284 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 284 (709)
...|.|.|+.|+|||+||+++++.+... ..+++..+....-....+..+++.+ ...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFL----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHH----------------HHHHHHHHh
Confidence 4678899999999999999999987643 2333332221111112233333322 223444566
Q ss_pred cCceEEEecCCCChh--------hh-------hhhh----cCCCCCCCCeEEEEEcCchhhhhh-----cCcceEEEecC
Q 005191 285 RMKVFIVLDDVNKYG--------QL-------EYFD----GGLDRFGPGSRIIVTTRDKTILER-----YGTHRIYEVEG 340 (709)
Q Consensus 285 ~kr~LLVLDdv~~~~--------~~-------~~l~----~~l~~~~~gsrIIvTTR~~~v~~~-----~~~~~~~~L~~ 340 (709)
..+-++||||++... ++ ..++ ..+...+..-.+|.|.....-... .-...+..+++
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 789999999995211 11 1111 111111222244555544422211 11235678888
Q ss_pred CChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCC-chHHHHH
Q 005191 341 LNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGN-PLALQVL 385 (709)
Q Consensus 341 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGl-PLAL~~l 385 (709)
+...+-.++++... .... .....+...-+..+|+|. |.-++++
T Consensus 573 p~~~~R~~IL~~~~-s~~~-~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIF-SKNL-SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHH-Hhhh-hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 88888777776554 2222 122233344588888874 5555544
No 165
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.77 E-value=0.023 Score=58.94 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=20.9
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+.+.|.|++|+|||+||+.+++..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 456789999999999999998754
No 166
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.76 E-value=0.0076 Score=72.73 Aligned_cols=133 Identities=16% Similarity=0.153 Sum_probs=72.3
Q ss_pred CCCccccchhhhHHHhhhhcc------CCC-ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHH
Q 005191 181 SDGLIGLESHVEQVRSLLAIG------LPD-VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLV 253 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~ 253 (709)
...++|-+.-++.+...+... .+. ...+.++|++|+|||+||+.+++.+...-...+-+. ..+.... ....
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~-~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEK-HTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhcccc-ccHH
Confidence 367899998888888877521 111 346778999999999999999987643222222222 2221111 1111
Q ss_pred HHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCc-eEEEecCCCC--hhhhhhhhcCCCCC-----------CCCeEEEE
Q 005191 254 HLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMK-VFIVLDDVNK--YGQLEYFDGGLDRF-----------GPGSRIIV 319 (709)
Q Consensus 254 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LLVLDdv~~--~~~~~~l~~~l~~~-----------~~gsrIIv 319 (709)
. + ++....-... +....+.+.++.++ .+++||+++. .+.++.++..+... ...+-+|+
T Consensus 586 ~----l---~g~~~gyvg~-~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 586 K----L---IGSPPGYVGY-NEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred H----h---cCCCCcccCc-CccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 1 1 1211111111 11223455555555 5899999974 44555555544321 13455666
Q ss_pred EcCc
Q 005191 320 TTRD 323 (709)
Q Consensus 320 TTR~ 323 (709)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 6654
No 167
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0056 Score=71.28 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=73.9
Q ss_pred CCccccchhhhHHHhhhhcc-------CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHH
Q 005191 182 DGLIGLESHVEQVRSLLAIG-------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVH 254 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~ 254 (709)
..++|-+.-+..+.+.+... +.........|+.|+|||-||++++..+-..=+..+-+. .++.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy--------- 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEY--------- 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHH---------
Confidence 57899999999888877531 122467778999999999999999997644323333332 2221
Q ss_pred HHHHHHHHh-cCCCCCCCCCChhHHHHHHHccCce-EEEecCCCC--hhhhhhhhcCCCC
Q 005191 255 LRNQVLSKL-LGENFDIGTPKIPQYIRDRLQRMKV-FIVLDDVNK--YGQLEYFDGGLDR 310 (709)
Q Consensus 255 l~~~ll~~l-~~~~~~~~~~~~~~~l~~~L~~kr~-LLVLDdv~~--~~~~~~l~~~l~~ 310 (709)
.-+.-++.+ +.+..-..-++ --.|-+..+++|| +|.||+++. ++..+-|+..+..
T Consensus 561 ~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 223344555 33333233333 3345566677877 888999964 5666666665543
No 168
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.73 E-value=0.0037 Score=66.82 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=28.8
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..+.++|.+|+|||.||..+++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67899999999999999999998766544555655
No 169
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.73 E-value=0.0072 Score=73.00 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=39.4
Q ss_pred CCCccccchhhhHHHhhhhcc------CCC-ceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 181 SDGLIGLESHVEQVRSLLAIG------LPD-VRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...++|-+.-++.+...+... .+. ...+.++|++|+|||+||+.+++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 356899999999888877632 111 247889999999999999999986543
No 170
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.67 E-value=0.014 Score=62.42 Aligned_cols=146 Identities=15% Similarity=0.099 Sum_probs=81.0
Q ss_pred ccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc---------------------cceEEEeee
Q 005191 184 LIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF---------------------EGKYFMANV 242 (709)
Q Consensus 184 ~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~~~v~~~ 242 (709)
++|-+.....+..+..........+.++|++|+||||+|..+++.+.... +....+. .
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~-~ 81 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN-P 81 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-c
Confidence 56667777777777764433455699999999999999999999765322 1112221 0
Q ss_pred cccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEE
Q 005191 243 REESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVT 320 (709)
Q Consensus 243 ~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvT 320 (709)
.+.... ....+..+.+......... .++.-++++|+++.. +.-..+...+......+.+|++
T Consensus 82 s~~~~~-~i~~~~vr~~~~~~~~~~~---------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~ 145 (325)
T COG0470 82 SDLRKI-DIIVEQVRELAEFLSESPL---------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILI 145 (325)
T ss_pred cccCCC-cchHHHHHHHHHHhccCCC---------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEE
Confidence 000000 0112222222222211110 245679999999753 3455666666555678888888
Q ss_pred cCch-hhhhhc-CcceEEEecCCChHHH
Q 005191 321 TRDK-TILERY-GTHRIYEVEGLNCNEA 346 (709)
Q Consensus 321 TR~~-~v~~~~-~~~~~~~L~~L~~~ea 346 (709)
|.+. .+.... +.-..+++.+.+..+.
T Consensus 146 ~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 146 TNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred cCChhhccchhhhcceeeecCCchHHHH
Confidence 8744 233322 1224566666444333
No 171
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.66 E-value=0.0059 Score=60.44 Aligned_cols=127 Identities=19% Similarity=0.200 Sum_probs=60.4
Q ss_pred cchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh--hhcccceEEEeeeccccccc----CCHH----HHH
Q 005191 187 LESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF--SQKFEGKYFMANVREESEKC----GGLV----HLR 256 (709)
Q Consensus 187 R~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~f~~~~~v~~~~~~~~~~----~~l~----~l~ 256 (709)
+..+-....+.|. ...++.+.|++|.|||.||.+.+-+. ...|+..++....-+..+.. .++. -..
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3344445555555 34689999999999999999888643 35577777765433211110 0000 011
Q ss_pred HHHHHHhcCCCCCCCCCChhHHHHH----------HHcc---CceEEEecCCC--ChhhhhhhhcCCCCCCCCeEEEEEc
Q 005191 257 NQVLSKLLGENFDIGTPKIPQYIRD----------RLQR---MKVFIVLDDVN--KYGQLEYFDGGLDRFGPGSRIIVTT 321 (709)
Q Consensus 257 ~~ll~~l~~~~~~~~~~~~~~~l~~----------~L~~---kr~LLVLDdv~--~~~~~~~l~~~l~~~~~gsrIIvTT 321 (709)
.-+...+..-. ..+..+.+.+ ++++ ...++|+|++. +..++..++... +.||++|++-
T Consensus 81 ~p~~d~l~~~~----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~G 153 (205)
T PF02562_consen 81 RPIYDALEELF----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITG 153 (205)
T ss_dssp HHHHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE
T ss_pred HHHHHHHHHHh----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEec
Confidence 11222221110 1111222221 2334 35799999994 566788776654 7899999987
Q ss_pred Cch
Q 005191 322 RDK 324 (709)
Q Consensus 322 R~~ 324 (709)
-..
T Consensus 154 D~~ 156 (205)
T PF02562_consen 154 DPS 156 (205)
T ss_dssp ---
T ss_pred Cce
Confidence 654
No 172
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.63 E-value=0.0091 Score=71.96 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=39.0
Q ss_pred CCccccchhhhHHHhhhhcc-------CCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 182 DGLIGLESHVEQVRSLLAIG-------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
..++|-+.-++.+.+.+... +....++.++|++|+|||.||+.+++.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 57889999888888877421 112457889999999999999999887643
No 173
>PRK04132 replication factor C small subunit; Provisional
Probab=96.61 E-value=0.11 Score=62.00 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=90.8
Q ss_pred Ec--cCCCchhHHHHHHHHHhhh-cccceEEEeeecccccccCCHHHHHHHHHHHhc-CCCCCCCCCChhHHHHHHHccC
Q 005191 211 WG--MGGIGKTTIAGVVFNQFSQ-KFEGKYFMANVREESEKCGGLVHLRNQVLSKLL-GENFDIGTPKIPQYIRDRLQRM 286 (709)
Q Consensus 211 ~G--~gGiGKTtLA~~v~~~~~~-~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~-~~~~~~~~~~~~~~l~~~L~~k 286 (709)
.| |.++||||+|..+++++-. .+...+.-.+..+. .+.. ..++++.... ..... ..+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~----rgid-~IR~iIk~~a~~~~~~--------------~~~ 630 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELNASDE----RGIN-VIREKVKEFARTKPIG--------------GAS 630 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCc----ccHH-HHHHHHHHHHhcCCcC--------------CCC
Confidence 36 7799999999999998632 23332222222211 2222 2333333221 11100 123
Q ss_pred ceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCch-hhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCCh
Q 005191 287 KVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRDK-TILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPE 362 (709)
Q Consensus 287 r~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~~-~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~ 362 (709)
.-++|||+++.. ++...++..+......+++|++|.+. .+.... +....+++.+++.++..+.+...+-.... .
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~ 708 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--E 708 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--C
Confidence 569999999864 46666776666555677777766654 333222 23368899999999988887765532221 1
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHh
Q 005191 363 DLLKHSETAAHYAKGNPLALQVLG 386 (709)
Q Consensus 363 ~~~~~~~~Iv~~~gGlPLAL~~la 386 (709)
...+....|++.++|.+.....+.
T Consensus 709 i~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 124568899999999885544433
No 174
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.61 E-value=0.0065 Score=61.48 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=37.0
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.|-++|..+-....++.|+|.+|+|||++|.+++.........++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344555544455789999999999999999999987766656677776
No 175
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.021 Score=61.04 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=48.9
Q ss_pred ceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCchh-hhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCCh
Q 005191 287 KVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDKT-ILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPE 362 (709)
Q Consensus 287 r~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~~-v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~ 362 (709)
+-++|+|+++. ......++..+.....+..+|++|.+.. +.... +.-..+.+.+++.+++.+.+.... . ..
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~ 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V-AE 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-Cc
Confidence 34556688864 3344444444433334566777777653 33322 123678999999999998886542 1 11
Q ss_pred hhHHHHHHHHHHhcCCchH
Q 005191 363 DLLKHSETAAHYAKGNPLA 381 (709)
Q Consensus 363 ~~~~~~~~Iv~~~gGlPLA 381 (709)
. ...+..++|.|+.
T Consensus 189 ~-----~~~l~~~~g~p~~ 202 (325)
T PRK08699 189 P-----EERLAFHSGAPLF 202 (325)
T ss_pred H-----HHHHHHhCCChhh
Confidence 1 1123568899964
No 176
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.58 E-value=0.0018 Score=58.44 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.3
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999875
No 177
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0062 Score=68.99 Aligned_cols=52 Identities=27% Similarity=0.491 Sum_probs=43.0
Q ss_pred CCccccchhhhHHHhhhhc----cCCCceEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 182 DGLIGLESHVEQVRSLLAI----GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
..-+|.++-.+.+.+.+.- ++-+..+++.+|++|+|||++|+.+++-+...|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 4568998888888888753 445678999999999999999999999876554
No 178
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.56 E-value=0.024 Score=59.17 Aligned_cols=174 Identities=19% Similarity=0.206 Sum_probs=99.4
Q ss_pred CCCCccccchhhhHHHhhhhcc--CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccc-cCCHHHHH
Q 005191 180 DSDGLIGLESHVEQVRSLLAIG--LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEK-CGGLVHLR 256 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~-~~~l~~l~ 256 (709)
+-..++|-.++-..+..++... -++..-+.|+|+.|.|||+|......+ .+.+.....+..+.+.... .-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3467999999999998888642 234567889999999999998877776 4455555555545443221 02344455
Q ss_pred HHHHHHhcCCCCCC-CCCChhHHHHHHHcc------CceEEEecCCCChh----h--hhhhhc-CCCCCCCCeEEEEEcC
Q 005191 257 NQVLSKLLGENFDI-GTPKIPQYIRDRLQR------MKVFIVLDDVNKYG----Q--LEYFDG-GLDRFGPGSRIIVTTR 322 (709)
Q Consensus 257 ~~ll~~l~~~~~~~-~~~~~~~~l~~~L~~------kr~LLVLDdv~~~~----~--~~~l~~-~l~~~~~gsrIIvTTR 322 (709)
+++..++....... +-.+....+...|.. .+++.|+|..+--. | +-.+.. .-....|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 55544442221111 122234444444432 46888998875311 1 111111 1112245566778998
Q ss_pred chhh-------hhhcCcceEEEecCCChHHHHHHhhhcc
Q 005191 323 DKTI-------LERYGTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 323 ~~~v-------~~~~~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
-... -...+...++-++.++.++-..+++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 7622 1222223466667778888777776655
No 179
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.56 E-value=0.0098 Score=63.92 Aligned_cols=100 Identities=19% Similarity=0.170 Sum_probs=59.5
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhccc-ceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCC
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE-GKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIG 271 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~ 271 (709)
.+++.+..- ...+.+.|+|.+|+|||||++.+++.+..+.+ ..+++..+.+- .....++.+.+...+.....+..
T Consensus 122 RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER---~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 122 RVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDER---PEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCC---CCCHHHHHHHHhhhEEeecCCCC
Confidence 355555532 23356689999999999999999998876553 33344334332 24567777777665543322211
Q ss_pred CCC---hh---HHHHHHH--ccCceEEEecCCC
Q 005191 272 TPK---IP---QYIRDRL--QRMKVFIVLDDVN 296 (709)
Q Consensus 272 ~~~---~~---~~l~~~L--~~kr~LLVLDdv~ 296 (709)
... .. ..+.+++ ++++++||+|++.
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 111 11 1111222 4689999999994
No 180
>PRK08118 topology modulation protein; Reviewed
Probab=96.56 E-value=0.0045 Score=59.60 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=25.3
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhh---cccceEE
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQ---KFEGKYF 238 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~---~f~~~~~ 238 (709)
.|.|+|++|+||||||+.+++.+.- +++...|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5889999999999999999997543 3555554
No 181
>PRK04296 thymidine kinase; Provisional
Probab=96.51 E-value=0.0038 Score=61.50 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=59.2
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCC--CCCCC-hhHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFD--IGTPK-IPQYIRDR 282 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~--~~~~~-~~~~l~~~ 282 (709)
.++.|+|+.|.||||+|..++.+...+...+.++. .. .... .. ...+.+.++..... ....+ ....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~~-~d~~-~~----~~~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-PA-IDDR-YG----EGKVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-cc-cccc-cc----CCcEecCCCCcccceEeCChHHHHHHHHh-
Confidence 47789999999999999999998766544444332 10 0000 11 11223333211111 11111 3333333
Q ss_pred HccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 283 LQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 283 L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
..++.-+||+|.+.- .+++..+...+. ..|..||+|.++.
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 233556999999953 333444443322 4678899999884
No 182
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.50 E-value=0.048 Score=65.13 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=85.3
Q ss_pred CCccccchhhhHHHhhhhc----cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 182 DGLIGLESHVEQVRSLLAI----GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
...+|.++-.+.+.++|.. .......+.++|++|+||||+|+.++..+...|-. +. ..... +...+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~---i~-~~~~~----d~~~i~g 393 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR---MA-LGGVR----DEAEIRG 393 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---EE-cCCCC----CHHHhcc
Confidence 4589999999999888763 12245689999999999999999999876543311 11 11111 1111110
Q ss_pred HHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChhh------hhhhhcCCCCC---------------CCCeE
Q 005191 258 QVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYGQ------LEYFDGGLDRF---------------GPGSR 316 (709)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~------~~~l~~~l~~~---------------~~gsr 316 (709)
.- ... .+.........+... ...+-+++||.++.... ...++..+... -.+..
T Consensus 394 ~~-~~~----~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 394 HR-RTY----IGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred ch-hcc----CCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 00 000 000001123333322 22344788999964221 23343333210 13344
Q ss_pred EEEEcCchhhhhh-cCcceEEEecCCChHHHHHHhhhcc
Q 005191 317 IIVTTRDKTILER-YGTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 317 IIvTTR~~~v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
+|.|+....+... .+...++++.+++.+|-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4555544322221 1233678999999999988887766
No 183
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.50 E-value=0.0088 Score=70.79 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=38.7
Q ss_pred CCccccchhhhHHHhhhhcc-------CCCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 182 DGLIGLESHVEQVRSLLAIG-------LPDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
..++|-+..++.|.+.+... ......+.++|++|+|||.||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999988888877631 11245788999999999999999988763
No 184
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.49 E-value=0.046 Score=60.65 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=25.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.+.++.++|++|+||||+|..++..+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46899999999999999999999887654
No 185
>PRK14974 cell division protein FtsY; Provisional
Probab=96.46 E-value=0.06 Score=57.65 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=25.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
++.++.++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998876654
No 186
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.43 E-value=0.0078 Score=60.09 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=35.1
Q ss_pred hhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 197 LLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 197 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+|..+-+..+++.|+|++|+|||+++.+++......-..++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34444456789999999999999999999987766656777877
No 187
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.43 E-value=0.0026 Score=68.02 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=42.5
Q ss_pred CCCccccchhhhHHHhhhhcc----CCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 181 SDGLIGLESHVEQVRSLLAIG----LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...++|.++.++++.+++... +...+++.|+|++|+||||||..+++.+..
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 347999999999999988652 234688999999999999999999987644
No 188
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.41 E-value=0.0057 Score=63.18 Aligned_cols=91 Identities=15% Similarity=0.244 Sum_probs=56.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCC-C---CCCCCCCh----
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGE-N---FDIGTPKI---- 275 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~-~---~~~~~~~~---- 275 (709)
..+.++|.|.+|+|||+|+..+++.++.+|+..+++..+++... ...++.+.+...-... . ....+...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~---Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTR---EGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH---HHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 35688999999999999999999998888887787776655433 3444444444321000 0 00111111
Q ss_pred -----hHHHHHHH--c-cCceEEEecCCCC
Q 005191 276 -----PQYIRDRL--Q-RMKVFIVLDDVNK 297 (709)
Q Consensus 276 -----~~~l~~~L--~-~kr~LLVLDdv~~ 297 (709)
.-.+.+++ + ++.+|+++||+-.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 11233444 3 7899999999843
No 189
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.41 E-value=0.025 Score=67.97 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=38.7
Q ss_pred CCccccchhhhHHHhhhhc----cCCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 182 DGLIGLESHVEQVRSLLAI----GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...+|.+.-.+.+.+++.. +......+.++|++|+|||++|+.+++.+...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~ 374 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK 374 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3477888888888776542 22234579999999999999999999987544
No 190
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.41 E-value=0.01 Score=60.47 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=35.4
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.|-+.|..+-+...++.|+|.+|+|||+||.+++.....+-..++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 444555555556789999999999999999999776444445566665
No 191
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.40 E-value=0.0046 Score=58.38 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=26.8
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
++.|+|++|+|||+++..++.....+-...+|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999987765444555555
No 192
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.075 Score=57.54 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=28.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+.++|+|+|++|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3589999999999999999999987754432333443
No 193
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.32 E-value=0.02 Score=67.18 Aligned_cols=128 Identities=17% Similarity=0.253 Sum_probs=70.8
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHcc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQR 285 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 285 (709)
+-+.|+|++|.|||++|+.++.+....| +.+. .. .+.. ...+ .........+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~----------~~~~----~~~g----~~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GS----------DFVE----MFVG----VGASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hH----------HhHH----hhhc----ccHHHHHHHHHHHHhc
Confidence 4489999999999999999988754332 1111 00 0110 0000 0000122233333345
Q ss_pred CceEEEecCCCChh----------------hhhhhhcCCCCC--CCCeEEEEEcCchhhhhh-----cCcceEEEecCCC
Q 005191 286 MKVFIVLDDVNKYG----------------QLEYFDGGLDRF--GPGSRIIVTTRDKTILER-----YGTHRIYEVEGLN 342 (709)
Q Consensus 286 kr~LLVLDdv~~~~----------------~~~~l~~~l~~~--~~gsrIIvTTR~~~v~~~-----~~~~~~~~L~~L~ 342 (709)
.+++|+||+++... .+..++..+..+ ..+.-+|.||..++.... -..++.+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 78999999996431 123333333222 234455667766643321 1234678888888
Q ss_pred hHHHHHHhhhccc
Q 005191 343 CNEALRLFCSCAF 355 (709)
Q Consensus 343 ~~ea~~Lf~~~a~ 355 (709)
.++-.+++..+..
T Consensus 324 ~~~R~~Il~~~~~ 336 (644)
T PRK10733 324 VRGREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888877663
No 194
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.012 Score=66.28 Aligned_cols=151 Identities=23% Similarity=0.269 Sum_probs=82.6
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCC-hhHHHHH
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPK-IPQYIRD 281 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~ 281 (709)
..++-|.++|+||+|||++|+.+++...-+|-.+ .. .++++..-++ .+. +.+.+++
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---------kg---------pEL~sk~vGe-----SEr~ir~iF~k 522 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---------KG---------PELFSKYVGE-----SERAIREVFRK 522 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---------cC---------HHHHHHhcCc-----hHHHHHHHHHH
Confidence 4578899999999999999999999866555221 00 0112221110 011 2222333
Q ss_pred HHccCceEEEecCCCChh-------------hhhhhhcCCCCCCCC--eEEEEEc-Cchhhhhhc----CcceEEEecCC
Q 005191 282 RLQRMKVFIVLDDVNKYG-------------QLEYFDGGLDRFGPG--SRIIVTT-RDKTILERY----GTHRIYEVEGL 341 (709)
Q Consensus 282 ~L~~kr~LLVLDdv~~~~-------------~~~~l~~~l~~~~~g--srIIvTT-R~~~v~~~~----~~~~~~~L~~L 341 (709)
.-+-.+++|.||.++... .+..++..+.-.... .-||-.| |...+-..+ ..++.+.++.-
T Consensus 523 AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplP 602 (693)
T KOG0730|consen 523 ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLP 602 (693)
T ss_pred HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCc
Confidence 334467899999886321 233444444322222 2333333 433322221 24578888888
Q ss_pred ChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 342 NCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 342 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
+.+.-.++|..++-+-...+. -...+|++++.|.-
T Consensus 603 D~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 603 DLEARLEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred cHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 888889999888733222221 12455666666553
No 195
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.0041 Score=58.09 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=28.3
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEE
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFM 239 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v 239 (709)
.--|.|+|++|+||||+++.+++.++.. |...-|+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 3468899999999999999999988776 6554443
No 196
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.30 E-value=0.019 Score=57.81 Aligned_cols=49 Identities=20% Similarity=0.250 Sum_probs=36.7
Q ss_pred hHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 192 EQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 192 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..|..+|..+-+...++.|.|.+|+||||||.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555544456789999999999999999999988765545566665
No 197
>PRK06696 uridine kinase; Validated
Probab=96.30 E-value=0.0063 Score=61.56 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=35.7
Q ss_pred cchhhhHHHhhhhc-cCCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 187 LESHVEQVRSLLAI-GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 187 R~~el~~L~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
|.+.+++|.+.+.. ..++..+|+|.|.+|+||||||+.+++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 55566666666643 34568899999999999999999999987543
No 198
>PRK07261 topology modulation protein; Provisional
Probab=96.29 E-value=0.016 Score=56.01 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 199
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.29 E-value=0.018 Score=58.18 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=34.8
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc------cceEEEe
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF------EGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~v~ 240 (709)
.|.++|..+-+...++.|+|.+|+|||+||.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34444544445578999999999999999999988754444 4556666
No 200
>PRK07667 uridine kinase; Provisional
Probab=96.26 E-value=0.0084 Score=59.20 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=32.8
Q ss_pred hhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 191 VEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 191 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
++.+.+.+....+...+|+|.|.+|.||||+|..+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345556665545566899999999999999999999987654
No 201
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.25 E-value=0.014 Score=55.36 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=60.4
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHh----cCCCCCC--CCC-C----
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKL----LGENFDI--GTP-K---- 274 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l----~~~~~~~--~~~-~---- 274 (709)
.+|-|++..|.||||+|...+-+...+-..+.++.-+.... . .+-...++.+ ..+ .+..... .+. +
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~-~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-K-YGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-c-cCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46778888899999999999887665543444433222211 1 2223333333 111 0100000 011 1
Q ss_pred ---hhHHHHHHHcc-CceEEEecCCCC-----hhhhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 275 ---IPQYIRDRLQR-MKVFIVLDDVNK-----YGQLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 275 ---~~~~l~~~L~~-kr~LLVLDdv~~-----~~~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
..+..++.+.. .-=|||||++.. .-..+.+...+....++..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11222333333 446999999832 223334444444345677899999986
No 202
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.25 E-value=0.0091 Score=59.04 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=47.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCC-ChhHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTP-KIPQYIRDRL 283 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~-~~~~~l~~~L 283 (709)
++++.++|+.|+||||.+..++.+...+-..+..+. .... . .+..+-++...+.++-+....... +..+.+++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis-~D~~-R--~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l 76 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS-ADTY-R--IGAVEQLKTYAEILGVPFYVARTESDPAEIAREAL 76 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-ESTS-S--THHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec-CCCC-C--ccHHHHHHHHHHHhccccchhhcchhhHHHHHHHH
Confidence 478999999999999999999988766633344443 2111 1 233445555566664332222211 2223233222
Q ss_pred ---cc-CceEEEecCC
Q 005191 284 ---QR-MKVFIVLDDV 295 (709)
Q Consensus 284 ---~~-kr~LLVLDdv 295 (709)
.. +-=++++|-.
T Consensus 77 ~~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHHTTSSEEEEEE-
T ss_pred HHHhhcCCCEEEEecC
Confidence 22 3357888876
No 203
>PHA00729 NTP-binding motif containing protein
Probab=96.22 E-value=0.02 Score=57.47 Aligned_cols=27 Identities=33% Similarity=0.242 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
+...+.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998754
No 204
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.20 E-value=0.0027 Score=64.33 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=29.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.-.++|.|.+|.|||||+..+.......|+....+.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 346778999999999999999998888996665554
No 205
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.18 E-value=0.0093 Score=63.57 Aligned_cols=29 Identities=31% Similarity=0.597 Sum_probs=25.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
-++.++|||++|+|||.+|+.++..+...
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 47899999999999999999999986544
No 206
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.17 E-value=0.11 Score=59.40 Aligned_cols=166 Identities=13% Similarity=0.135 Sum_probs=99.6
Q ss_pred CCCCccccchhhhHHHhhhhc--cC-CCceEEEEEccCCCchhHHHHHHHHHhhh-----cccceEEEeeecccccccCC
Q 005191 180 DSDGLIGLESHVEQVRSLLAI--GL-PDVRLVGIWGMGGIGKTTIAGVVFNQFSQ-----KFEGKYFMANVREESEKCGG 251 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-----~f~~~~~v~~~~~~~~~~~~ 251 (709)
.+..+-+|+.|..+|.+.+.. .. .....+-|.|.+|.|||+.+..|.+.++. .-+...|+. +. .-....
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-IN--gm~l~~ 470 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-IN--GLRLAS 470 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ec--ceeecC
Confidence 677899999999999998864 22 33568899999999999999999986541 123223332 11 111245
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc-----cCceEEEecCCCCh-----hhhhhhhcCCCCC-CCCeEEEEE
Q 005191 252 LVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ-----RMKVFIVLDDVNKY-----GQLEYFDGGLDRF-GPGSRIIVT 320 (709)
Q Consensus 252 l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-----~kr~LLVLDdv~~~-----~~~~~l~~~l~~~-~~gsrIIvT 320 (709)
..++...|...+.+.... .....+.|..+.. .+++++++|+++.. +.+-.+. .|- .++|+++|.
T Consensus 471 ~~~~Y~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~f---dWpt~~~sKLvvi 545 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIF---DWPTLKNSKLVVI 545 (767)
T ss_pred HHHHHHHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHh---cCCcCCCCceEEE
Confidence 677888888888554322 1114555665554 35789999998532 2223332 222 367776554
Q ss_pred cC-ch-hhhh---------hcCcceEEEecCCChHHHHHHhhhcc
Q 005191 321 TR-DK-TILE---------RYGTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 321 TR-~~-~v~~---------~~~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
+= +. .... .+ ....+...|.+.++-.++...+.
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred EecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhh
Confidence 42 11 1111 11 12345667777777666666555
No 207
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.16 E-value=0.0042 Score=59.83 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=44.6
Q ss_pred EEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHcc--
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQR-- 285 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~-- 285 (709)
+.|.|.+|.|||++|.+++.. ......|+..... .+ .++.+.+..............+....+.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~-----~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEA-----FD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCc-----CC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 678999999999999999865 2235556642211 22 234444444332222233333334445555532
Q ss_pred CceEEEecCC
Q 005191 286 MKVFIVLDDV 295 (709)
Q Consensus 286 kr~LLVLDdv 295 (709)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 3447999987
No 208
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.15 E-value=0.013 Score=62.76 Aligned_cols=47 Identities=28% Similarity=0.242 Sum_probs=39.1
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..++|+...++++.+.+..-.....-|.|+|.+|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46999999999999888764444567889999999999999988753
No 209
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.13 E-value=0.024 Score=64.85 Aligned_cols=47 Identities=30% Similarity=0.444 Sum_probs=37.7
Q ss_pred CCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 181 SDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+.++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999998876533 34567899999999999999998743
No 210
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.12 E-value=0.026 Score=58.85 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=27.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEE
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFM 239 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v 239 (709)
+.+++.++|++|+||||++..++..+...-..+.++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 468999999999999999999998776543333334
No 211
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.10 E-value=0.012 Score=63.61 Aligned_cols=109 Identities=14% Similarity=0.176 Sum_probs=64.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ 284 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 284 (709)
...+.|.|+.|.||||+...+...+.......++.. .++ ...........+...............++..|+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-----Edp---~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-----EDP---IEYVHRNKRSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-----cCC---hhhhccCccceEEccccCCCCcCHHHHHHHhhc
Confidence 468999999999999999999887765544554443 110 000000000001111111222336777888899
Q ss_pred cCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 285 RMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 285 ~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
..+=.|++|.+.+.+.+....... ..|..++.|.-..
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 999999999998877666543321 3455566555544
No 212
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.05 E-value=0.046 Score=62.87 Aligned_cols=51 Identities=25% Similarity=0.285 Sum_probs=41.7
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.....++|....++++.+.+..-......|.|+|.+|+|||++|+.+.+.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999999998887544445567899999999999999998753
No 213
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.02 Score=61.36 Aligned_cols=96 Identities=23% Similarity=0.235 Sum_probs=57.3
Q ss_pred hhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCC--C
Q 005191 191 VEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGEN--F 268 (709)
Q Consensus 191 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~--~ 268 (709)
..++.+.|..+--...++.|-|.+|||||||..+++.++..+. .+.|+. ++.+ ..+ .+--...++... .
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs--GEES-----~~Q-iklRA~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS--GEES-----LQQ-IKLRADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe--CCcC-----HHH-HHHHHHHhCCCccce
Confidence 4455566654333467999999999999999999999998776 666665 1111 112 122233333211 1
Q ss_pred CCCCCChhHHHHHHH-ccCceEEEecCC
Q 005191 269 DIGTPKIPQYIRDRL-QRMKVFIVLDDV 295 (709)
Q Consensus 269 ~~~~~~~~~~l~~~L-~~kr~LLVLDdv 295 (709)
..-.+.-.+.+.+.+ +.++-++|+|-+
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 111112233343333 468899999998
No 214
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.02 E-value=0.0043 Score=57.63 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=33.1
Q ss_pred cccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 185 IGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 185 vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
||....++++.+.+..-......|.|+|.+|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 57777888888877654344567889999999999999988775
No 215
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.02 E-value=0.024 Score=53.15 Aligned_cols=112 Identities=16% Similarity=0.279 Sum_probs=60.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCC-hhHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPK-IPQYIRDR 282 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~ 282 (709)
...+++|.|..|.|||||++.++..... ....+++.......-- .. .+..+ ..-.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~-~~------------------lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYF-EQ------------------LSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEE-cc------------------CCHHHHHHHHHHHH
Confidence 4578999999999999999998775432 2344444311100000 00 11111 23334556
Q ss_pred HccCceEEEecCCC---ChhhhhhhhcCCCCCCCCeEEEEEcCchhhhhhcCcceEEEe
Q 005191 283 LQRMKVFIVLDDVN---KYGQLEYFDGGLDRFGPGSRIIVTTRDKTILERYGTHRIYEV 338 (709)
Q Consensus 283 L~~kr~LLVLDdv~---~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~~~~~~~~L 338 (709)
+..++-++++|+-. +....+.+...+... +..||++|.+....... .++++.+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 66778899999873 233333333222221 24678888776554432 2344443
No 216
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.01 E-value=0.028 Score=54.77 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=63.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHH------HHHHHHHHhcCC------CCCCC
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVH------LRNQVLSKLLGE------NFDIG 271 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~------l~~~ll~~l~~~------~~~~~ 271 (709)
...+++|.|+.|.|||||.+.++..... ....+++.... ... ..... ...+++..++-. ....+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~-~~~--~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKD-LAS--LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEE-CCc--CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 4579999999999999999998875432 34445543211 110 01111 111133333211 11111
Q ss_pred CCC-hhHHHHHHHccCceEEEecCCC---ChhhhhhhhcCCCCC-CC-CeEEEEEcCchhhhh
Q 005191 272 TPK-IPQYIRDRLQRMKVFIVLDDVN---KYGQLEYFDGGLDRF-GP-GSRIIVTTRDKTILE 328 (709)
Q Consensus 272 ~~~-~~~~l~~~L~~kr~LLVLDdv~---~~~~~~~l~~~l~~~-~~-gsrIIvTTR~~~v~~ 328 (709)
..+ ..-.+.+.+...+-++++|+-- +....+.+...+... .. +..||++|.+.....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 112 3334556677788999999973 223333333322211 22 567888888776543
No 217
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.99 E-value=0.024 Score=56.05 Aligned_cols=51 Identities=24% Similarity=0.202 Sum_probs=40.3
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
|..-..+||-++-++.+.-.-.+ ++.+-+.|.||+|+||||-+..+++.+-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 34445689999888887766553 3577888999999999999999998754
No 218
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.97 E-value=0.022 Score=62.05 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=36.2
Q ss_pred hHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 192 EQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 192 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.+|.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3445555544445689999999999999999999988766545566665
No 219
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.83 E-value=0.22 Score=55.20 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.+.++.++|++|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999988765
No 220
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.82 E-value=0.17 Score=57.92 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=42.7
Q ss_pred CCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 180 DSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+..++|+...++++.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45779999999999999887655556788899999999999999998853
No 221
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.80 E-value=0.014 Score=55.18 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=29.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..+|.|+|.+|.||||||+++.+++...-....++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 468999999999999999999999988766666665
No 222
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.80 E-value=0.022 Score=57.96 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=33.4
Q ss_pred HHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc------ccceEEEe
Q 005191 194 VRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK------FEGKYFMA 240 (709)
Q Consensus 194 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~v~ 240 (709)
|...|..+-+...++.|+|.+|+|||+||.+++...... -..++|+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 334454444557899999999999999999998654322 25667776
No 223
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.79 E-value=0.012 Score=57.09 Aligned_cols=37 Identities=27% Similarity=0.517 Sum_probs=31.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
...+|.+.|++|+||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4569999999999999999999999887776666664
No 224
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.033 Score=62.26 Aligned_cols=127 Identities=21% Similarity=0.293 Sum_probs=74.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHH-HHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQY-IRDRL 283 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~-l~~~L 283 (709)
+.-|.+||++|+|||-||+++++.-.-+| +. + .+. +++...-++ .+..+.. +.+.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-V-------KGP-----ELlNkYVGE-----SErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-V-------KGP-----ELLNKYVGE-----SERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-e-------cCH-----HHHHHHhhh-----HHHHHHHHHHHhh
Confidence 56788999999999999999999866655 22 1 011 122221110 0112222 22333
Q ss_pred ccCceEEEecCCCCh-------------hhhhhhhcCCCCC--CCCeEEEEEcCchhhhh-h----cCcceEEEecCCCh
Q 005191 284 QRMKVFIVLDDVNKY-------------GQLEYFDGGLDRF--GPGSRIIVTTRDKTILE-R----YGTHRIYEVEGLNC 343 (709)
Q Consensus 284 ~~kr~LLVLDdv~~~-------------~~~~~l~~~l~~~--~~gsrIIvTTR~~~v~~-~----~~~~~~~~L~~L~~ 343 (709)
..-+++|+||.++.. ..+.+++..+.-. ..|.-||-.|..+.+.. . -.-+..+-++.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 457999999999531 1345555544422 24666676665443322 1 12346777888888
Q ss_pred HHHHHHhhhcc
Q 005191 344 NEALRLFCSCA 354 (709)
Q Consensus 344 ~ea~~Lf~~~a 354 (709)
+|-.+++....
T Consensus 682 ~eR~~ILK~~t 692 (802)
T KOG0733|consen 682 EERVAILKTIT 692 (802)
T ss_pred HHHHHHHHHHh
Confidence 88888888776
No 225
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.73 E-value=0.0079 Score=54.53 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=20.4
Q ss_pred EEEEccCCCchhHHHHHHHHHh
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (709)
|+|.|++|+||||+|+++.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 226
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.73 E-value=0.033 Score=53.49 Aligned_cols=127 Identities=15% Similarity=0.131 Sum_probs=63.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEee---ecccccccC-CHHHHHHHHHHHhcCCCCCCCCCC-hhHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMAN---VREESEKCG-GLVHLRNQVLSKLLGENFDIGTPK-IPQY 278 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~---~~~~~~~~~-~l~~l~~~ll~~l~~~~~~~~~~~-~~~~ 278 (709)
....++|.|+.|.|||||++.++...... ...+++.. +.-..+... ....+...+.. ......+..+ ..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~---~~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY---PWDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhc---cCCCCCCHHHHHHHH
Confidence 45789999999999999999998754321 22222221 111111100 00122222211 0111222222 3344
Q ss_pred HHHHHccCceEEEecCCC---ChhhhhhhhcCCCCCCCCeEEEEEcCchhhhhhcCcceEEEe
Q 005191 279 IRDRLQRMKVFIVLDDVN---KYGQLEYFDGGLDRFGPGSRIIVTTRDKTILERYGTHRIYEV 338 (709)
Q Consensus 279 l~~~L~~kr~LLVLDdv~---~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~~~~~~~~L 338 (709)
+.+.+..++-++++|+-- +....+.+...+... +..||++|.+...... .++++.+
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 556667788899999873 222233333222222 3567788877655432 3455544
No 227
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.73 E-value=0.048 Score=52.94 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=63.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhc--CC-------------CC
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLL--GE-------------NF 268 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~--~~-------------~~ 268 (709)
...+++|.|+.|.|||||++.++..... ....+++... . +......+-..+. .. ..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~-------~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~ 97 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-P-------VSDLEKALSSLISVLNQRPYLFDTTLRNNLGR 97 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-E-------HHHHHHHHHhhEEEEccCCeeecccHHHhhcc
Confidence 4568999999999999999999875322 2333433311 0 0000001111110 00 00
Q ss_pred CCCCCC-hhHHHHHHHccCceEEEecCCCC---hhhhhhhhcCCCCCCCCeEEEEEcCchhhhhhcCcceEEEec
Q 005191 269 DIGTPK-IPQYIRDRLQRMKVFIVLDDVNK---YGQLEYFDGGLDRFGPGSRIIVTTRDKTILERYGTHRIYEVE 339 (709)
Q Consensus 269 ~~~~~~-~~~~l~~~L~~kr~LLVLDdv~~---~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~~~~~~~~L~ 339 (709)
..+..+ ..-.+.+.+..++=++++|+... ....+.+...+.....+..||++|.+...... .++++.+.
T Consensus 98 ~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 111111 23334556677888999999842 22222222222211235678888888766543 34555543
No 228
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.12 Score=56.17 Aligned_cols=150 Identities=13% Similarity=0.060 Sum_probs=81.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ 284 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 284 (709)
-|-..++||||.|||++..++++.+. .-++.-.+..+... . + ++.++.. .
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~~n-~---d-Lr~LL~~---------------------t 284 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVKLD-S---D-LRHLLLA---------------------T 284 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccccCc-H---H-HHHHHHh---------------------C
Confidence 47788999999999999999988642 33444433333222 1 1 2222222 1
Q ss_pred cCceEEEecCCCChhh--------------------hhhhhcCC---CCCCCCeEE-EEEcCchhhhhh-----cCcceE
Q 005191 285 RMKVFIVLDDVNKYGQ--------------------LEYFDGGL---DRFGPGSRI-IVTTRDKTILER-----YGTHRI 335 (709)
Q Consensus 285 ~kr~LLVLDdv~~~~~--------------------~~~l~~~l---~~~~~gsrI-IvTTR~~~v~~~-----~~~~~~ 335 (709)
..+-+||+.|++..-+ +--|+..+ ...+.+-|| |.||-..+-+.. -..+..
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 2456777777742100 01122211 111223465 556655533221 123455
Q ss_pred EEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 336 YEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 336 ~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
+.+.--+.+.-..|+.+...... +. .+..+|.+...|.-+.=..++..|
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 67888888888888888874322 22 345666666666655555555554
No 229
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.68 E-value=0.034 Score=57.69 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=59.6
Q ss_pred hhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCC
Q 005191 191 VEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDI 270 (709)
Q Consensus 191 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~ 270 (709)
++.+..++.. ...++.|.|+.|.||||++..+...+...-...+.+.+..+... .+. .++.. ...
T Consensus 69 ~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~--------~q~~v--~~~ 133 (264)
T cd01129 69 LEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGI--------NQVQV--NEK 133 (264)
T ss_pred HHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCc--------eEEEe--CCc
Confidence 3444444432 24589999999999999999988776442222333332211110 000 01100 001
Q ss_pred CCCChhHHHHHHHccCceEEEecCCCChhhhhhhhcC
Q 005191 271 GTPKIPQYIRDRLQRMKVFIVLDDVNKYGQLEYFDGG 307 (709)
Q Consensus 271 ~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~l~~~ 307 (709)
........++..++..+=.++++++.+.+....+...
T Consensus 134 ~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 134 AGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 1123677788888889999999999888766554433
No 230
>PRK10867 signal recognition particle protein; Provisional
Probab=95.68 E-value=0.25 Score=54.74 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=25.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.+.+|.++|++|+||||.+..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999999998877655
No 231
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.11 Score=56.30 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=47.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhccc--ceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCC-hhHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE--GKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPK-IPQYIR 280 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~ 280 (709)
...+++++|+.|+||||++..++.+....+. .+.++. .... . .+-.+-++.....++.......... ....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~-R--~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l- 210 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSY-R--IGGHEQLRIFGKILGVPVHAVKDGGDLQLAL- 210 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccc-c--ccHHHHHHHHHHHcCCceEecCCcccHHHHH-
Confidence 3579999999999999999999987654432 344443 1111 0 1222333333344433222222222 33333
Q ss_pred HHHccCceEEEecCCC
Q 005191 281 DRLQRMKVFIVLDDVN 296 (709)
Q Consensus 281 ~~L~~kr~LLVLDdv~ 296 (709)
..+.++ -++++|..-
T Consensus 211 ~~l~~~-DlVLIDTaG 225 (374)
T PRK14722 211 AELRNK-HMVLIDTIG 225 (374)
T ss_pred HHhcCC-CEEEEcCCC
Confidence 334444 566699884
No 232
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.038 Score=63.00 Aligned_cols=151 Identities=20% Similarity=0.170 Sum_probs=82.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
..+.+.++|++|.|||.||++++......|-....- .++....+ .........+....
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~------------------~l~sk~vG----esek~ir~~F~~A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS------------------ELLSKWVG----ESEKNIRELFEKAR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH------------------HHhccccc----hHHHHHHHHHHHHH
Confidence 456899999999999999999999654444211110 11111100 00000333334444
Q ss_pred ccCceEEEecCCCCh-------------hhhhhhhcCCCCC--CCCeEEEEEcCchhhhhh-----cCcceEEEecCCCh
Q 005191 284 QRMKVFIVLDDVNKY-------------GQLEYFDGGLDRF--GPGSRIIVTTRDKTILER-----YGTHRIYEVEGLNC 343 (709)
Q Consensus 284 ~~kr~LLVLDdv~~~-------------~~~~~l~~~l~~~--~~gsrIIvTTR~~~v~~~-----~~~~~~~~L~~L~~ 343 (709)
+..++.|.+|+++.. .....++..+... ..+..||-||-.+..... ..-+..+.+++-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 578999999999531 1233333333211 234445555654433321 12356889999999
Q ss_pred HHHHHHhhhcccccCCCChhhHHHHHHHHHHhcC
Q 005191 344 NEALRLFCSCAFKENHCPEDLLKHSETAAHYAKG 377 (709)
Q Consensus 344 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gG 377 (709)
++..+.|..+......+ -...-..+.+++.+.|
T Consensus 413 ~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 413 EERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 99999998887422221 0111224455555555
No 233
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.64 E-value=0.058 Score=52.04 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=37.6
Q ss_pred hhHHHHHHHccCceEEEecCC----CChhhhhhh--hcCCCCCCCCeEEEEEcCchhhhhhcC
Q 005191 275 IPQYIRDRLQRMKVFIVLDDV----NKYGQLEYF--DGGLDRFGPGSRIIVTTRDKTILERYG 331 (709)
Q Consensus 275 ~~~~l~~~L~~kr~LLVLDdv----~~~~~~~~l--~~~l~~~~~gsrIIvTTR~~~v~~~~~ 331 (709)
..-.+.+.+-++|-+|+-|.- +....|+-+ +..+ +..|..||++|.+..+...+.
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhcc
Confidence 455677778899999999954 433334322 2222 246899999999998877663
No 234
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.12 Score=60.29 Aligned_cols=180 Identities=16% Similarity=0.174 Sum_probs=102.2
Q ss_pred CCCCCccccchhhhHH---Hhhhhcc-------CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccc
Q 005191 179 SDSDGLIGLESHVEQV---RSLLAIG-------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEK 248 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L---~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~ 248 (709)
.....+.|-++-.++| .+.|... ..-++=+.|+|++|.|||-||++++-.- .+-|+... ..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svS----GS 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVS----GS 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeec----hH
Confidence 3456788887655544 4555431 1236788999999999999999998863 22233311 10
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh-----------------hhhhhhhcCCCCC
Q 005191 249 CGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY-----------------GQLEYFDGGLDRF 311 (709)
Q Consensus 249 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~-----------------~~~~~l~~~l~~~ 311 (709)
+++..+.+. ......+.....-.+.++++.+|+++.. ..+++++..+.-+
T Consensus 379 ---------EFvE~~~g~----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 379 ---------EFVEMFVGV----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred ---------HHHHHhccc----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 111111110 0000122222223456889999887521 2345566555544
Q ss_pred CCCe--EEEEEcCchhhhhh-----cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 312 GPGS--RIIVTTRDKTILER-----YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 312 ~~gs--rIIvTTR~~~v~~~-----~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
..+. -+|-+|....++.. -..++.+.++.-+.....++|.-++-..... .+..++++ |+..+-|++=|.
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 4333 33445555444332 1235678888888889999998888443332 34445555 888888888654
No 235
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.55 E-value=0.014 Score=65.77 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=42.1
Q ss_pred CCccccchhhhHHHhhhh----ccCCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 182 DGLIGLESHVEQVRSLLA----IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
..++|.++.++.+.+.|. .-....+++.++|++|+|||+||+.+++-+...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 368999999999999883 223456899999999999999999999865443
No 236
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.51 E-value=0.3 Score=53.89 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=25.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.+.+|.++|++|+||||++..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999998876554
No 237
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.49 E-value=0.049 Score=64.64 Aligned_cols=49 Identities=24% Similarity=0.205 Sum_probs=39.9
Q ss_pred CCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 181 SDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...++|+...++.+.+.+..-......|.|+|.+|+|||++|+.+.+.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3579999999999887776543445678899999999999999998753
No 238
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.48 E-value=0.031 Score=59.29 Aligned_cols=48 Identities=27% Similarity=0.331 Sum_probs=36.1
Q ss_pred HHHhhhh-ccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 193 QVRSLLA-IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.|-.+|. .+-+..+++.|+|++|+||||||.+++......-..++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3444554 44456789999999999999999999887766555566775
No 239
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.48 E-value=0.035 Score=59.01 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=36.6
Q ss_pred HHHhhhh-ccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 193 QVRSLLA-IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.|-.+|. .+-+..+++-|+|++|+||||||.+++......-...+|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3444554 44456789999999999999999999887766656677776
No 240
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.47 E-value=0.012 Score=58.12 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=23.4
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
+|+|.|++|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999987643
No 241
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.44 E-value=0.06 Score=54.24 Aligned_cols=170 Identities=19% Similarity=0.157 Sum_probs=93.9
Q ss_pred CCccccchhhh---HHHhhhhc----cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHH
Q 005191 182 DGLIGLESHVE---QVRSLLAI----GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVH 254 (709)
Q Consensus 182 ~~~vGR~~el~---~L~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~ 254 (709)
+..||-+.... -|.+.|.. +.-.++-|..+|++|.|||.+|+++++....-| +. + .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~-v-----------k 183 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL-V-----------K 183 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE-e-----------c
Confidence 45777765443 23445543 223478999999999999999999998754322 11 0 0
Q ss_pred HHHHHHHHh-cCCCCCCCCCChhHHHHHH-HccCceEEEecCCCC--------------hhhhhhhhcCCCC--CCCCeE
Q 005191 255 LRNQVLSKL-LGENFDIGTPKIPQYIRDR-LQRMKVFIVLDDVNK--------------YGQLEYFDGGLDR--FGPGSR 316 (709)
Q Consensus 255 l~~~ll~~l-~~~~~~~~~~~~~~~l~~~-L~~kr~LLVLDdv~~--------------~~~~~~l~~~l~~--~~~gsr 316 (709)
. .+++... +. ....+..+-++ -+.-++++.||.++- .+..++++..+.. .+.|..
T Consensus 184 a-t~liGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 184 A-TELIGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred h-HHHHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 0 1111111 11 00022222222 234689999998852 1234555554442 245666
Q ss_pred EEEEcCchhhhhhc---CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCC
Q 005191 317 IIVTTRDKTILERY---GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGN 378 (709)
Q Consensus 317 IIvTTR~~~v~~~~---~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGl 378 (709)
.|-.|.+...+... .....++..--+.+|-.+++...+-.-..+.. ...+.++++++|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCC
Confidence 67777666554421 12356677777888888888877722221111 1155666777665
No 242
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.40 E-value=0.032 Score=63.20 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=40.1
Q ss_pred hhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 190 HVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 190 el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
-+.+|.++|..+-....++.|.|++|+|||||+.+++.....+-..++|+.
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345666777666566789999999999999999999998766655666665
No 243
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.39 E-value=0.04 Score=55.96 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=31.0
Q ss_pred hhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 190 HVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 190 el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
+..++.+.+.....+..+|+|+|+||.|||||..++...+...
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3344444444444567899999999999999999999887654
No 244
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.37 E-value=0.089 Score=52.04 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=57.3
Q ss_pred hhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCC
Q 005191 191 VEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDI 270 (709)
Q Consensus 191 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~ 270 (709)
.+.+...+.. +-++..|.|++|.|||+++..+...+...-..+++.. .. ......+....+....
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a------pT----~~Aa~~L~~~~~~~a~-- 71 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA------PT----NKAAKELREKTGIEAQ-- 71 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE------SS----HHHHHHHHHHHTS-EE--
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC------Cc----HHHHHHHHHhhCcchh--
Confidence 3344444442 3468889999999999999998887666532233332 11 1122223333221100
Q ss_pred CCCChhHHHHHHH----------ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 271 GTPKIPQYIRDRL----------QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 271 ~~~~~~~~l~~~L----------~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
.+..+.... ..+.-+||+|++.. ...+..+..... ..++++|+.--..
T Consensus 72 ----Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 72 ----TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp ----EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred ----hHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence 000000000 12345999999964 446666666554 2577887766544
No 245
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.35 E-value=0.082 Score=51.31 Aligned_cols=127 Identities=15% Similarity=0.124 Sum_probs=62.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccc-cc-cCCHHHHHHHHHHHhcCCC--CCC--CCCC---
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREES-EK-CGGLVHLRNQVLSKLLGEN--FDI--GTPK--- 274 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~-~~-~~~l~~l~~~ll~~l~~~~--~~~--~~~~--- 274 (709)
...+++|.|+.|+|||||.+.+... ...+.+....... .. ..-.. +.+.+..++-.. ... ....
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~-----~G~v~~~~~~~~~~~~~~~~~~--q~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA-----SGKARLISFLPKFSRNKLIFID--QLQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc-----CCcEEECCcccccccccEEEEh--HHHHHHHcCCCccccCCCcCcCCHHH
Confidence 4578999999999999999987531 1111111000000 00 00000 134445443211 111 1111
Q ss_pred -hhHHHHHHHccC--ceEEEecCCC---ChhhhhhhhcCCCCC-CCCeEEEEEcCchhhhhhcCcceEEEec
Q 005191 275 -IPQYIRDRLQRM--KVFIVLDDVN---KYGQLEYFDGGLDRF-GPGSRIIVTTRDKTILERYGTHRIYEVE 339 (709)
Q Consensus 275 -~~~~l~~~L~~k--r~LLVLDdv~---~~~~~~~l~~~l~~~-~~gsrIIvTTR~~~v~~~~~~~~~~~L~ 339 (709)
..-.+...+..+ +-++++|+-- +....+.+...+... ..|..||++|.+...... .++++.+.
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l~ 162 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDFG 162 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEEC
Confidence 222344555667 7899999873 233233333222211 246678888888765542 44555553
No 246
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.33 E-value=0.049 Score=52.92 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=60.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeee--cccccccCCHHHHHHHHHHHhcCCCCCCCCCC-hhHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANV--REESEKCGGLVHLRNQVLSKLLGENFDIGTPK-IPQYIR 280 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~--~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~ 280 (709)
...+++|.|+.|.|||||.+.++.-... ....+.+... .-..+. .. .+..+ ..-.+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~-~~------------------LSgGq~qrv~la 83 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQY-ID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEccc-CC------------------CCHHHHHHHHHH
Confidence 3569999999999999999988764322 2333333211 001110 00 11111 333455
Q ss_pred HHHccCceEEEecCCC---ChhhhhhhhcCCCCC--CCCeEEEEEcCchhhhhhcCcceEEEec
Q 005191 281 DRLQRMKVFIVLDDVN---KYGQLEYFDGGLDRF--GPGSRIIVTTRDKTILERYGTHRIYEVE 339 (709)
Q Consensus 281 ~~L~~kr~LLVLDdv~---~~~~~~~l~~~l~~~--~~gsrIIvTTR~~~v~~~~~~~~~~~L~ 339 (709)
..+..++-++++|+-- +....+.+...+... ..+..||++|.+....... .++++.+.
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 5666788899999873 222222222222111 1225677777776554433 23455554
No 247
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.32 E-value=0.036 Score=50.33 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=51.4
Q ss_pred eEEecCCcccccCchHHHHHHHHHhCCCceEEcC-CCCCCCcccHHHHHHHHhccceeEEeccC
Q 005191 7 DVFLSFRGEDTRDNFLSHLVVALQEKKIKTFIDE-ELTRGDQISPALVKAIEESMISVIIFSKN 69 (709)
Q Consensus 7 dvFiS~~~~D~~~~f~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~S~~~ivvlS~~ 69 (709)
.|||.|+ +| ..+++.+...|+..|+.+.+=. ....|..+.+.+.+.+.+++.+|++++|+
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899997 66 5689999999998888865433 56889999999999999999999999983
No 248
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.047 Score=52.65 Aligned_cols=128 Identities=19% Similarity=0.269 Sum_probs=63.3
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCC---------CCCCC
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFD---------IGTPK 274 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~---------~~~~~ 274 (709)
...+++|.|+.|.|||||.+.++..... ....+++... .... ......... ..-+.....- .+..+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~-~~~~--~~~~~~~~~-i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGV-DLRD--LDLESLRKN-IAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCE-Ehhh--cCHHHHHhh-EEEEcCCchhccchHHHHhhCHHH
Confidence 4578999999999999999999875432 3344444311 0000 000010000 0000000000 11111
Q ss_pred -hhHHHHHHHccCceEEEecCCCC---hhhhhhhhcCCCCCCCCeEEEEEcCchhhhhhcCcceEEEe
Q 005191 275 -IPQYIRDRLQRMKVFIVLDDVNK---YGQLEYFDGGLDRFGPGSRIIVTTRDKTILERYGTHRIYEV 338 (709)
Q Consensus 275 -~~~~l~~~L~~kr~LLVLDdv~~---~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~~~~~~~~L 338 (709)
..-.+...+..++-+++||+-.. ....+.+...+.....+..||++|.+...... .++++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 22334556667888999998742 22222222222211234678888888766543 3455544
No 249
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.27 Score=50.57 Aligned_cols=172 Identities=17% Similarity=0.189 Sum_probs=92.9
Q ss_pred CCccccchhhhHHHhhhhc----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCC
Q 005191 182 DGLIGLESHVEQVRSLLAI----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGG 251 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~ 251 (709)
+..-|.+...+.|.+...- ....-+-|.++|++|.|||-||++|+...... |+. ++..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-----FFS----vSSS--- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-----FFS----VSSS--- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-----eEE----eehH---
Confidence 4567888777777775421 11235889999999999999999999874332 222 1111
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH-ccCceEEEecCCCCh---------hhhhh----hhcC---CCCCCCC
Q 005191 252 LVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL-QRMKVFIVLDDVNKY---------GQLEY----FDGG---LDRFGPG 314 (709)
Q Consensus 252 l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LLVLDdv~~~---------~~~~~----l~~~---l~~~~~g 314 (709)
.+.+...++. +.+...|.+.. ++++-+|.+|.++.. +.... ++-. ......|
T Consensus 201 ------DLvSKWmGES-----EkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 201 ------DLVSKWMGES-----EKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred ------HHHHHHhccH-----HHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 1222221110 11333333333 468899999999531 11111 1111 1222346
Q ss_pred eEEEEEcCchhhhhhc---CcceEEEecCCChHHH-HHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 315 SRIIVTTRDKTILERY---GTHRIYEVEGLNCNEA-LRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 315 srIIvTTR~~~v~~~~---~~~~~~~L~~L~~~ea-~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
..|+-.|..+-++.+. .....+-+ ||++..| ..+|.-+.+. .+....+...+++.+++.|.-
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~--tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGD--TPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCC--CccccchhhHHHHHhhcCCCC
Confidence 6667777776544432 12223333 4555555 4566666532 233334455677888887754
No 250
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.24 E-value=0.055 Score=52.74 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.2
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
+.|.++|.+|+||||+|+++++.++++-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4688999999999999999999776653
No 251
>PRK08233 hypothetical protein; Provisional
Probab=95.22 E-value=0.015 Score=56.35 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998753
No 252
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.22 E-value=0.03 Score=53.59 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=61.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCC-hhHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPK-IPQYIRDR 282 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~ 282 (709)
...+++|.|+.|.|||||.+.++.... .....+++... .... .......+ ..++. ....+..+ ..-.+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~~--~~~~~~~~---~~i~~-~~qLS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGK-EVSF--ASPRDARR---AGIAM-VYQLSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECCc--CCHHHHHh---cCeEE-EEecCHHHHHHHHHHHH
Confidence 457899999999999999999887542 23444554421 1110 11111110 01110 00022222 33345566
Q ss_pred HccCceEEEecCCCC---hhhhhhhhcCCCCC-CCCeEEEEEcCchhhhh
Q 005191 283 LQRMKVFIVLDDVNK---YGQLEYFDGGLDRF-GPGSRIIVTTRDKTILE 328 (709)
Q Consensus 283 L~~kr~LLVLDdv~~---~~~~~~l~~~l~~~-~~gsrIIvTTR~~~v~~ 328 (709)
+..++-++++|+-.. ....+.+...+... ..+..||++|.+.....
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 677888999999732 22223332222211 23667888888875444
No 253
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.22 E-value=0.17 Score=48.70 Aligned_cols=117 Identities=16% Similarity=0.091 Sum_probs=59.1
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHh--cCCCCC--CCCCC-------
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKL--LGENFD--IGTPK------- 274 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l--~~~~~~--~~~~~------- 274 (709)
..|-|++..|.||||.|..++.+...+--.++.+.-+... .. .+-...++.+.-.+ .+.... ..+.+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~-~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WP-NGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cc-cChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 5777888899999999999988765543333322212111 11 22223333321111 111100 01111
Q ss_pred -hhHHHHHHHcc-CceEEEecCCC-----ChhhhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 275 -IPQYIRDRLQR-MKVFIVLDDVN-----KYGQLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 275 -~~~~l~~~L~~-kr~LLVLDdv~-----~~~~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
.....++.+.. +-=|||||.+. ..-..+.+...+....++..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12223334444 44599999983 1222233333333345677999999987
No 254
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.22 E-value=0.14 Score=52.34 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEEEEccCCCchhHHHHHHHHHhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
+..|+|+||+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999988654
No 255
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.22 E-value=0.06 Score=57.78 Aligned_cols=45 Identities=31% Similarity=0.237 Sum_probs=36.1
Q ss_pred ccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 184 LIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 184 ~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
++|....++++.+.+..-.....-|.|+|.+|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 478888888888877654444567889999999999999988764
No 256
>PRK09354 recA recombinase A; Provisional
Probab=95.22 E-value=0.045 Score=58.66 Aligned_cols=48 Identities=29% Similarity=0.333 Sum_probs=37.2
Q ss_pred HHHhhhh-ccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 193 QVRSLLA-IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.|-.+|. .+-+..+++-|+|++|+||||||.+++......-...+|+.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 3445555 44456789999999999999999999887766656677776
No 257
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.20 E-value=0.018 Score=57.56 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=24.4
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+..+|+|.|.+|+|||||++.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999876
No 258
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.19 E-value=0.059 Score=60.30 Aligned_cols=50 Identities=24% Similarity=0.258 Sum_probs=36.5
Q ss_pred hhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 191 VEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 191 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+.+|.+.|..+-....++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555666544445679999999999999999999987764434556665
No 259
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.18 E-value=0.036 Score=57.58 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=21.4
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
+.|.|+|.||+||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 478999999999999999999977663
No 260
>PRK06762 hypothetical protein; Provisional
Probab=95.18 E-value=0.017 Score=55.35 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+.+|.|+|++|+||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 261
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.15 E-value=0.19 Score=56.55 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=24.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...+++|+|++|+||||++..++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999998876544
No 262
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.14 E-value=0.055 Score=60.61 Aligned_cols=50 Identities=24% Similarity=0.269 Sum_probs=37.3
Q ss_pred hhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 191 VEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 191 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+.+|.+.|..+-....++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44555666555455789999999999999999999887665534556665
No 263
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.13 E-value=0.078 Score=51.22 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=63.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhc--CCCCC------------
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLL--GENFD------------ 269 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~--~~~~~------------ 269 (709)
...+++|.|+.|.|||||.+.++..... ....+++... .... . . ......+. .....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~--~--~---~~~~~~i~~~~q~~~~~~~~tv~~~~~ 95 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGK-DIKK--E--P---EEVKRRIGYLPEEPSLYENLTVRENLK 95 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCE-Eccc--c--h---HhhhccEEEEecCCccccCCcHHHHhh
Confidence 4578999999999999999998775322 2334443311 0000 0 0 00001110 00000
Q ss_pred CCCCC-hhHHHHHHHccCceEEEecCCCC---hhhhhhhhcCCCCC-CCCeEEEEEcCchhhhhhcCcceEEEe
Q 005191 270 IGTPK-IPQYIRDRLQRMKVFIVLDDVNK---YGQLEYFDGGLDRF-GPGSRIIVTTRDKTILERYGTHRIYEV 338 (709)
Q Consensus 270 ~~~~~-~~~~l~~~L~~kr~LLVLDdv~~---~~~~~~l~~~l~~~-~~gsrIIvTTR~~~v~~~~~~~~~~~L 338 (709)
.+..+ ..-.+...+..++-++++|+-.. ....+.+...+... ..|..||++|.+....... .++++.+
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 11111 23345566777899999999832 22222222222111 2366788888887655533 2344444
No 264
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.12 E-value=0.12 Score=49.80 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.0
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
++.+.|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999887665
No 265
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.11 E-value=0.082 Score=49.80 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=21.9
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
++.|.|.+|+||||||+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987653
No 266
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.11 E-value=0.018 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.0
Q ss_pred EEEEEccCCCchhHHHHHHHHHhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987643
No 267
>PTZ00301 uridine kinase; Provisional
Probab=95.10 E-value=0.019 Score=57.32 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=25.0
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
..+|+|.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999988875543
No 268
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.10 E-value=0.014 Score=51.63 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.2
Q ss_pred EEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
|-|+|++|+|||+||..++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998876553
No 269
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.05 E-value=0.017 Score=60.17 Aligned_cols=128 Identities=14% Similarity=0.128 Sum_probs=70.0
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHH
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLS 261 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~ 261 (709)
+.+.-.....+.+.+.|...-.....+.|.|..|.||||++..+...+...-...+-+.+..+..-+ . ..
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~---------~-~~ 173 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP---------G-PN 173 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S---------C-SS
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec---------c-cc
Confidence 3344333444555555553323468999999999999999999988765551222333322111000 0 00
Q ss_pred HhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChhhhhhhhcCCCCCCCCeEE-EEEcCch
Q 005191 262 KLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRI-IVTTRDK 324 (709)
Q Consensus 262 ~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrI-IvTTR~~ 324 (709)
...... ........+.++..|+..+=.++++.+.+.+....+... ..|..+ +-|....
T Consensus 174 ~~~~~~-~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 174 QIQIQT-RRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp EEEEEE-ETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred eEEEEe-ecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 000000 012223778888889999999999999888777664333 456666 5555433
No 270
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.03 E-value=0.087 Score=50.90 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=63.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCC---------CCCCC
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFD---------IGTPK 274 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~---------~~~~~ 274 (709)
...+++|.|+.|.|||||.+.++..... ....+.+... .... .........+ ..+.....- .+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~--~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGA-DISQ--WDPNELGDHV-GYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCE-Eccc--CCHHHHHhhe-EEECCCCccccCcHHHHCcCHHH
Confidence 4568999999999999999999875432 2334443311 1000 0111111100 000000000 11111
Q ss_pred -hhHHHHHHHccCceEEEecCCC---ChhhhhhhhcCCCCC-CCCeEEEEEcCchhhhhhcCcceEEEe
Q 005191 275 -IPQYIRDRLQRMKVFIVLDDVN---KYGQLEYFDGGLDRF-GPGSRIIVTTRDKTILERYGTHRIYEV 338 (709)
Q Consensus 275 -~~~~l~~~L~~kr~LLVLDdv~---~~~~~~~l~~~l~~~-~~gsrIIvTTR~~~v~~~~~~~~~~~L 338 (709)
..-.+...+..++=++++|+-. +......+...+... ..|..||++|.+..... . .++++.+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 2334455566778899999973 222222222222111 23667888888776554 2 4455554
No 271
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.049 Score=60.01 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=34.5
Q ss_pred CCccccch---hhhHHHhhhhccC-------CCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 182 DGLIGLES---HVEQVRSLLAIGL-------PDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 182 ~~~vGR~~---el~~L~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...-|.|+ |++++.+.|.... .=++-|.++|++|.|||-||++++-+.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 44556665 5666666665421 116788999999999999999998763
No 272
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.97 E-value=0.052 Score=56.37 Aligned_cols=46 Identities=28% Similarity=0.326 Sum_probs=37.1
Q ss_pred HhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 195 RSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 195 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
...|..+-+..+++=|+|+.|.||||+|.+++-..+..-...+|++
T Consensus 50 D~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 50 DEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 3444444456799999999999999999999887777767888887
No 273
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.96 E-value=0.11 Score=52.88 Aligned_cols=208 Identities=15% Similarity=0.186 Sum_probs=110.7
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh------cccceEEEeeecc------cc---
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ------KFEGKYFMANVRE------ES--- 246 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~v~~~~~------~~--- 246 (709)
..+.++++.-..+.+... ..+.+-..++|++|.||-|.+..+.+++-. +-+...|...... .+
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 347777777777777655 235778889999999999999988887533 1233344332111 00
Q ss_pred -------cccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCce-EEEecCCCC--hhhhhhhhcCCCCCCCCeE
Q 005191 247 -------EKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKV-FIVLDDVNK--YGQLEYFDGGLDRFGPGSR 316 (709)
Q Consensus 247 -------~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LLVLDdv~~--~~~~~~l~~~l~~~~~gsr 316 (709)
+....-.-+.++++..+.....-. .-..+++ ++|+-.+++ .+.-.++........+.+|
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie-----------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIE-----------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchh-----------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 000001122233333321110000 0011233 556666653 2222333333333456778
Q ss_pred EEEEcCch-hhhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhc--C-
Q 005191 317 IIVTTRDK-TILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFH--R- 391 (709)
Q Consensus 317 IIvTTR~~-~v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~--~- 391 (709)
+|+..-+. .+.... +.--.++++..+++|....+++.+-++...-+ .+++.+|+++++|+---.-.+....+ +
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 87754332 111111 12245789999999999999887744332222 57899999999997432222222221 1
Q ss_pred --------CChhhHHHHHHHh
Q 005191 392 --------KSKPDWVNTLNNL 404 (709)
Q Consensus 392 --------~~~~ew~~~L~~L 404 (709)
-+..+|+-.+.+.
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred cccccCCCCCCccHHHHHHHH
Confidence 1356798888764
No 274
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.95 E-value=0.032 Score=56.69 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=26.7
Q ss_pred CCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 202 LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.+...+++|.|++|.|||||++.+...+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3467899999999999999999999876654
No 275
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.48 Score=47.55 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=68.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHH-
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDR- 282 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~- 282 (709)
++.-+.++|++|.|||-||+++++. ....|+. ++.. ++.+..+ + + ....+++.
T Consensus 180 QPKGvlLygppgtGktLlaraVahh-----t~c~fir-vsgs--------elvqk~i---g-e--------gsrmvrelf 233 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIR-VSGS--------ELVQKYI---G-E--------GSRMVRELF 233 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhh-----cceEEEE-echH--------HHHHHHh---h-h--------hHHHHHHHH
Confidence 5677889999999999999999885 2334444 2211 1211111 1 1 12223322
Q ss_pred ---HccCceEEEecCCCChh------------h----hhhhhcCCCCC--CCCeEEEEEcCchhhhhh-----cCcceEE
Q 005191 283 ---LQRMKVFIVLDDVNKYG------------Q----LEYFDGGLDRF--GPGSRIIVTTRDKTILER-----YGTHRIY 336 (709)
Q Consensus 283 ---L~~kr~LLVLDdv~~~~------------~----~~~l~~~l~~~--~~gsrIIvTTR~~~v~~~-----~~~~~~~ 336 (709)
-.+-+.+|+.|.+++.. . .-.++..+..+ ..+-+||..|..-+++.. -..++.+
T Consensus 234 vmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrki 313 (404)
T KOG0728|consen 234 VMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKI 313 (404)
T ss_pred HHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccc
Confidence 23467888889886421 1 11233333322 356677776654433321 2244667
Q ss_pred EecCCChHHHHHHhhhcc
Q 005191 337 EVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 337 ~L~~L~~~ea~~Lf~~~a 354 (709)
+.++-+.+.-.+++.-+.
T Consensus 314 efp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 314 EFPPPNEEARLDILKIHS 331 (404)
T ss_pred cCCCCCHHHHHHHHHHhh
Confidence 777777776677765544
No 276
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.94 E-value=0.02 Score=46.27 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.9
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+++|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 277
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.93 E-value=0.034 Score=61.84 Aligned_cols=46 Identities=24% Similarity=0.202 Sum_probs=38.7
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
..++||++.++.+...+..+ .-|.|.|++|+|||+||+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 46999999999988877633 46789999999999999999986543
No 278
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.93 E-value=0.32 Score=54.16 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=33.4
Q ss_pred chhhhHHHhhhh-----ccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 188 ESHVEQVRSLLA-----IGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 188 ~~el~~L~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+-+.++..||. ...-+.+++.|+|++|+||||-.+.++..+
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 345777788887 344457899999999999999999888763
No 279
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.90 E-value=0.026 Score=56.39 Aligned_cols=28 Identities=39% Similarity=0.655 Sum_probs=24.5
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
+...+|+|.|++|+|||||++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999999988654
No 280
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.88 E-value=0.07 Score=60.95 Aligned_cols=26 Identities=38% Similarity=0.618 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHH
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
+..+++.++|++|+||||||.-++++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh
Confidence 45789999999999999999998886
No 281
>PRK03839 putative kinase; Provisional
Probab=94.86 E-value=0.021 Score=55.53 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=21.5
Q ss_pred EEEEEccCCCchhHHHHHHHHHhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.|.|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999863
No 282
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.80 E-value=0.53 Score=55.46 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=38.9
Q ss_pred CCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 181 SDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+.++|....+.++.+....-......|.|+|.+|+||+++|+.+.+.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4668999998888888776533344558899999999999999988753
No 283
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.80 E-value=0.024 Score=54.46 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...|.|+|++|+||||+|+.+++++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999986
No 284
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.79 E-value=0.14 Score=55.96 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
..+++.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999988765
No 285
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.76 E-value=0.019 Score=52.10 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=20.2
Q ss_pred EEEEccCCCchhHHHHHHHHHhhhcccc
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQFSQKFEG 235 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~f~~ 235 (709)
|.|+|.+|+|||++|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988777653
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.75 E-value=0.11 Score=54.41 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
..++++|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999999877543
No 287
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.74 E-value=0.036 Score=50.93 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=28.9
Q ss_pred hhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 190 HVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 190 el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+..++-+.|...-....++.+.|.-|.|||||++.+++.+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444444322345689999999999999999999875
No 288
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.74 E-value=0.18 Score=63.96 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.++-|.++|++|.|||.||+++|...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 46788999999999999999999863
No 289
>PRK04040 adenylate kinase; Provisional
Probab=94.74 E-value=0.029 Score=55.16 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=22.9
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.+|+|+|++|+||||+++.+.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999874
No 290
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.71 E-value=0.19 Score=54.29 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=28.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+.++++|+|+.|+||||++..++..+..+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999887644433344444
No 291
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.69 E-value=0.15 Score=54.22 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=28.5
Q ss_pred hHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 192 EQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 192 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..|-++|..+-+...++-|+|++|+|||+|+.+++-.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 3455566655456789999999999999999988753
No 292
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.66 E-value=0.2 Score=53.12 Aligned_cols=135 Identities=20% Similarity=0.253 Sum_probs=70.5
Q ss_pred CccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHH-H-h-hhcccceEEEeeecccccc--------cCC
Q 005191 183 GLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFN-Q-F-SQKFEGKYFMANVREESEK--------CGG 251 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~-~-~-~~~f~~~~~v~~~~~~~~~--------~~~ 251 (709)
++-+|..+-.--.++|. .++...|.+.|.+|.|||.||.+..- + + +..|...+....+-...+. ...
T Consensus 225 Gi~prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 225 GIRPRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred ccCcccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhh
Confidence 34455555555555555 34688999999999999999876543 2 1 2334443332211111110 011
Q ss_pred HHHHHHHHHHHh---cCCCCCCCCCChhHHH-H---------HHHcc---CceEEEecCCCC--hhhhhhhhcCCCCCCC
Q 005191 252 LVHLRNQVLSKL---LGENFDIGTPKIPQYI-R---------DRLQR---MKVFIVLDDVNK--YGQLEYFDGGLDRFGP 313 (709)
Q Consensus 252 l~~l~~~ll~~l---~~~~~~~~~~~~~~~l-~---------~~L~~---kr~LLVLDdv~~--~~~~~~l~~~l~~~~~ 313 (709)
+..+.+.+...+ .... ... ....+.+ . .+.++ .+-++|+|.+.+ ..+++.+... .++
T Consensus 303 m~PWmq~i~DnLE~L~~~~-~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR---~G~ 377 (436)
T COG1875 303 MGPWMQAIFDNLEVLFSPN-EPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTR---AGE 377 (436)
T ss_pred ccchHHHHHhHHHHHhccc-ccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHh---ccC
Confidence 222333343333 1111 011 1112211 1 11233 357899999965 5566666544 489
Q ss_pred CeEEEEEcCch
Q 005191 314 GSRIIVTTRDK 324 (709)
Q Consensus 314 gsrIIvTTR~~ 324 (709)
||+|+.|.-..
T Consensus 378 GsKIVl~gd~a 388 (436)
T COG1875 378 GSKIVLTGDPA 388 (436)
T ss_pred CCEEEEcCCHH
Confidence 99999987543
No 293
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.62 E-value=0.054 Score=56.13 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=30.5
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+...++.|.|++|+|||++|.+++.....+-..++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45789999999999999999999876544545667766
No 294
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.22 Score=59.31 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=66.6
Q ss_pred CCccccchhhhHHHhhhhcc---C---CCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHH
Q 005191 182 DGLIGLESHVEQVRSLLAIG---L---PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~---~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l 255 (709)
...+|-++-+..+-+.+... . .......+.|+.|+|||.||++++..+.+..+..+-+. +.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 45677777777777766531 1 13567888999999999999999998766555444443 2222
Q ss_pred HHHHHHHhcCCCCCCCCCChhHHHHHHHccCce-EEEecCCCC
Q 005191 256 RNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKV-FIVLDDVNK 297 (709)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LLVLDdv~~ 297 (709)
.. ...+.+.+...-..+...+|-+.++++++ +|.||||+.
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhh
Confidence 22 34443333333333355678888888775 677899974
No 295
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.58 E-value=0.069 Score=55.48 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=64.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCC----C-CCCCChhHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENF----D-IGTPKIPQY 278 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~----~-~~~~~~~~~ 278 (709)
+..-++|.|++|.|||||.+.++..+... ...+++... ....- ....++... ...+..... + .++......
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~-d~~~ei~~~-~~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIV-DERSEIAGC-VNGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-Eeecc-hhHHHHHHH-hcccccccccccccccccchHHHH
Confidence 35688999999999999999999876543 333333211 11000 111122211 111111110 0 111112222
Q ss_pred HHHHHc-cCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchhhh
Q 005191 279 IRDRLQ-RMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKTIL 327 (709)
Q Consensus 279 l~~~L~-~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~ 327 (709)
+...+. ..+-++++|.+...+.+..+...+. .|..+|+||.+..+.
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 333333 5788999999987776776665542 477899999876553
No 296
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.57 E-value=0.047 Score=52.79 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...+++|.|++|+||||+|+.++..+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999998754
No 297
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.57 E-value=0.2 Score=49.67 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...+++|.|..|.|||||++.++....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 457999999999999999999877543
No 298
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.57 E-value=0.038 Score=54.89 Aligned_cols=30 Identities=37% Similarity=0.492 Sum_probs=26.5
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
..+.+|+|.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 356899999999999999999999987655
No 299
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.53 E-value=0.23 Score=51.61 Aligned_cols=37 Identities=16% Similarity=0.008 Sum_probs=29.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v~ 240 (709)
...++.|.|.+|+||||++.+++.....+ -..++|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 45688999999999999999998876554 34555665
No 300
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.52 E-value=0.031 Score=54.55 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+..+++|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 301
>PTZ00494 tuzin-like protein; Provisional
Probab=94.50 E-value=2.4 Score=46.55 Aligned_cols=165 Identities=14% Similarity=0.095 Sum_probs=94.1
Q ss_pred CCCCCCCccccchhhhHHHhhhhc-cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHH
Q 005191 177 AISDSDGLIGLESHVEQVRSLLAI-GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 177 ~~~~~~~~vGR~~el~~L~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l 255 (709)
.+..+..+|.|+.|-.-+...|.. +...+|+++++|.-|.|||+|.+....+ .--..+|+. ++.. .+.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~paV~VD-VRg~-------EDt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV---EGVALVHVD-VGGT-------EDT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH---cCCCeEEEE-ecCC-------cch
Confidence 345678899999999988888875 3345899999999999999999877664 223445554 3332 234
Q ss_pred HHHHHHHhcCCCCCCCCCChhHHHHHH-------HccCceEEEecCC--CChhhh-hhhhcCCCCCCCCeEEEEEcCchh
Q 005191 256 RNQVLSKLLGENFDIGTPKIPQYIRDR-------LQRMKVFIVLDDV--NKYGQL-EYFDGGLDRFGPGSRIIVTTRDKT 325 (709)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~l~~~-------L~~kr~LLVLDdv--~~~~~~-~~l~~~l~~~~~gsrIIvTTR~~~ 325 (709)
++.+...++-.+.+.-.+ +.+.+.+. ..++.-+||+-== .+..-. .+.. .+.....-++|++---.+.
T Consensus 435 LrsVVKALgV~nve~CGD-lLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplES 512 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGD-LLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKA 512 (664)
T ss_pred HHHHHHHhCCCChhhhcc-HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhh
Confidence 556666776555443322 33333222 2344555555311 111111 1100 1111123456665433322
Q ss_pred hhh---hcCcceEEEecCCChHHHHHHhhhcc
Q 005191 326 ILE---RYGTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 326 v~~---~~~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
+-. ....-..|-+++++.++|.+......
T Consensus 513 LT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 513 LTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 111 11123578999999999999876554
No 302
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.48 E-value=0.2 Score=50.25 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=39.1
Q ss_pred hhHHHHHHHccCceEEEecCC----CC--hhhhhhhhcCCCCCCCCeEEEEEcCchhhhhhcCcceEEEec
Q 005191 275 IPQYIRDRLQRMKVFIVLDDV----NK--YGQLEYFDGGLDRFGPGSRIIVTTRDKTILERYGTHRIYEVE 339 (709)
Q Consensus 275 ~~~~l~~~L~~kr~LLVLDdv----~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~~~~~~~~L~ 339 (709)
..-.+.+.|...|-+|+-|+= +. ...+-.++..+.. ..|..||+.|.++.++..+ ++++.+.
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 455677888889999999975 21 2222223322211 3477899999999988864 3455544
No 303
>PRK06547 hypothetical protein; Provisional
Probab=94.47 E-value=0.036 Score=53.61 Aligned_cols=27 Identities=37% Similarity=0.366 Sum_probs=24.0
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
....+|+|.|++|+||||+|..+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998863
No 304
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.46 E-value=0.04 Score=54.03 Aligned_cols=93 Identities=18% Similarity=0.219 Sum_probs=52.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhc--CCCC-CCCCCChhHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLL--GENF-DIGTPKIPQYIR 280 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~--~~~~-~~~~~~~~~~l~ 280 (709)
....++|.|+.|.|||||++.+...+... ...+.+....+.... ..... .+. .... ........+.++
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 94 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLP-------HPNWV-RLVTRPGNVEGSGEVTMADLLR 94 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCC-------CCCEE-EEEEecCCCCCCCccCHHHHHH
Confidence 34689999999999999999988765432 222323211111000 00000 010 0010 011122566777
Q ss_pred HHHccCceEEEecCCCChhhhhhhh
Q 005191 281 DRLQRMKVFIVLDDVNKYGQLEYFD 305 (709)
Q Consensus 281 ~~L~~kr~LLVLDdv~~~~~~~~l~ 305 (709)
..++..+-.++++.+.+.+.+..+.
T Consensus 95 ~~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 95 SALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred HHhccCCCEEEEEccCcHHHHHHHH
Confidence 7788888999999998877665443
No 305
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.45 E-value=0.12 Score=55.13 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=34.1
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc------ccceEEEe
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK------FEGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~v~ 240 (709)
.+..+|..+-+...++-|+|++|+|||+|+.+++...... -..++|+.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3445555444557899999999999999999998765321 12566776
No 306
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.45 E-value=0.07 Score=54.47 Aligned_cols=48 Identities=23% Similarity=0.247 Sum_probs=36.6
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.|-++|..+-+...++.|.|.+|+|||+||.++......+-..++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 444556555566789999999999999999998876545556677776
No 307
>PRK00625 shikimate kinase; Provisional
Probab=94.44 E-value=0.03 Score=54.22 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.3
Q ss_pred EEEEEccCCCchhHHHHHHHHHhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.|.|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988753
No 308
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.41 E-value=0.049 Score=56.27 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=27.7
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.|-++|..+-....+.=|+|++|+|||+|+.+++-..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 4555555433446789999999999999999887643
No 309
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.41 E-value=0.062 Score=53.91 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCchhHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
.+.+.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999875
No 310
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.39 E-value=0.1 Score=54.41 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=29.1
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhhcccceE
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKY 237 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~ 237 (709)
.+..++.|.|.+|.|||||...+...+.......+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 36899999999999999999999998776654333
No 311
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.38 E-value=0.13 Score=52.60 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=69.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccc-ccCCHHHHHHHHHHHhcCC-------CCCCCCCC-
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE-KCGGLVHLRNQVLSKLLGE-------NFDIGTPK- 274 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~-~~~~l~~l~~~ll~~l~~~-------~~~~~~~~- 274 (709)
+..+++|+|.+|+|||||++.+..-.... .+.+++..-. ... ......+...+++...+.. ..+.+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~-i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKD-ITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcc-hhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45799999999999999999998754332 2333333110 000 0022334445555554321 11223333
Q ss_pred hhHHHHHHHccCceEEEecCCCCh------hhhhhhhcCCCCCCCCeEEEEEcCchhhhhhcC
Q 005191 275 IPQYIRDRLQRMKVFIVLDDVNKY------GQLEYFDGGLDRFGPGSRIIVTTRDKTILERYG 331 (709)
Q Consensus 275 ~~~~l~~~L~~kr~LLVLDdv~~~------~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~~ 331 (709)
..-.+.+.|.-++-++|.|..-+. .+.-.++..+.. ..|...+..|-+-.+...++
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhc
Confidence 444567778889999999987431 222233322221 23556777777776666543
No 312
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.38 E-value=0.065 Score=55.53 Aligned_cols=45 Identities=29% Similarity=0.301 Sum_probs=37.2
Q ss_pred hhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 196 SLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 196 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+.|..+-+..+++.|+|.+|+|||+++.++..+...+...++|+.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 334444466799999999999999999999998888877888887
No 313
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.36 E-value=0.046 Score=53.22 Aligned_cols=26 Identities=46% Similarity=0.560 Sum_probs=22.7
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
+|+|.|.+|+||||||..+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999876543
No 314
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.36 E-value=0.098 Score=61.01 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
....++|+|.+|.|||||++.+...+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999987754
No 315
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.33 E-value=0.05 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEccCCCchhHHHHHHHHHhhh
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
+.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 316
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.30 E-value=0.095 Score=53.45 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=34.8
Q ss_pred hhHHHHHHHccCceEEEecCCC------ChhhhhhhhcCCCCCCCCeEEEEEcCchhhhhh
Q 005191 275 IPQYIRDRLQRMKVFIVLDDVN------KYGQLEYFDGGLDRFGPGSRIIVTTRDKTILER 329 (709)
Q Consensus 275 ~~~~l~~~L~~kr~LLVLDdv~------~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~ 329 (709)
..-.+.+.|..++=|++||.-- ....+-.++..+. ..|..||++|-+-.....
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 4455677888999999999752 2223444444444 238889999988754443
No 317
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.29 E-value=4 Score=43.15 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=85.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc---------cc-ceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCC
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK---------FE-GKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPK 274 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------f~-~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~ 274 (709)
.++..++|..|+||+++|..+++.+-.. .+ ...++. ..+ ......++ +++...+.-...
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g---~~i~vd~I-r~l~~~~~~~~~------ 86 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD---KDLSKSEF-LSAINKLYFSSF------ 86 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC---CcCCHHHH-HHHHHHhccCCc------
Confidence 5788899999999999999999876211 11 112221 000 10111121 122222211100
Q ss_pred hhHHHHHHHccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCc-hhhhhh-cCcceEEEecCCChHHHHHHh
Q 005191 275 IPQYIRDRLQRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRD-KTILER-YGTHRIYEVEGLNCNEALRLF 350 (709)
Q Consensus 275 ~~~~l~~~L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~-~~v~~~-~~~~~~~~L~~L~~~ea~~Lf 350 (709)
-.+.+=++|+|+++.. ...+.++..+....+++.+|++|.+ ..+.+. .+...++++.+++.++..+.+
T Consensus 87 --------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l 158 (299)
T PRK07132 87 --------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL 158 (299)
T ss_pred --------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHH
Confidence 0135668889998754 3456666666655677777765544 344433 234578999999999998877
Q ss_pred hhcccccCCCChhhHHHHHHHHHHhcCCchHHHH
Q 005191 351 CSCAFKENHCPEDLLKHSETAAHYAKGNPLALQV 384 (709)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~ 384 (709)
.... .+ .+.+..++...+|.--|+..
T Consensus 159 ~~~~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 159 LSKN-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHcC-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 6531 11 12355556666652234444
No 318
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.29 E-value=0.21 Score=51.36 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+++|.|+.|+|||||++.++...
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35789999999999999999988753
No 319
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.28 E-value=0.036 Score=53.68 Aligned_cols=24 Identities=25% Similarity=0.381 Sum_probs=21.9
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998874
No 320
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.27 E-value=0.27 Score=52.30 Aligned_cols=48 Identities=27% Similarity=0.061 Sum_probs=32.5
Q ss_pred EEEecCCChHHHHHHhhhcccccCCCC-hhhHHHHHHHHHHhcCCchHH
Q 005191 335 IYEVEGLNCNEALRLFCSCAFKENHCP-EDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 335 ~~~L~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~Iv~~~gGlPLAL 382 (709)
++++++++.+|+..++....-.+--.. ...+...+++.-..+|||.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999877663222111 223344566666679999654
No 321
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.26 E-value=0.16 Score=50.03 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||++.++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999998853
No 322
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.25 E-value=0.057 Score=51.22 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=64.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCC-hhHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPK-IPQYIRDRL 283 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L 283 (709)
..+++|.|..|.|||||.+.++..+. .....+++.... ... ..... ....+.-. ...+..+ ..-.+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~~--~~~~~----~~~~i~~~-~qlS~G~~~r~~l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IAK--LPLEE----LRRRIGYV-PQLSGGQRQRVALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-ccc--CCHHH----HHhceEEE-eeCCHHHHHHHHHHHHH
Confidence 47999999999999999999987543 234445554211 100 00111 11111000 0011122 333455666
Q ss_pred ccCceEEEecCCC---ChhhhhhhhcCCCCC-CCCeEEEEEcCchhhhhhcCcceEEEe
Q 005191 284 QRMKVFIVLDDVN---KYGQLEYFDGGLDRF-GPGSRIIVTTRDKTILERYGTHRIYEV 338 (709)
Q Consensus 284 ~~kr~LLVLDdv~---~~~~~~~l~~~l~~~-~~gsrIIvTTR~~~v~~~~~~~~~~~L 338 (709)
...+-++++|+.. +......+...+... ..+..+|++|.+....... .++++.+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 6778899999984 222222332222111 2246788888877655543 2344444
No 323
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.23 E-value=0.076 Score=54.83 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=33.0
Q ss_pred hHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 192 EQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 192 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
.+|...+....++..+|+|+|.||+|||||...+..++..+-
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G 79 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERG 79 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCC
Confidence 345555554556788999999999999999999998876553
No 324
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.19 E-value=0.22 Score=53.62 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=32.9
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh--c----ccceEEEe
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ--K----FEGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~----f~~~~~v~ 240 (709)
.|-++|..+-+...+.-|+|++|+|||+|+.+++-...- . -...+|+.
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 344555544455788999999999999999998754321 1 13556776
No 325
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.18 E-value=0.084 Score=57.26 Aligned_cols=102 Identities=19% Similarity=0.292 Sum_probs=57.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
.++=+=|||..|.|||.|+-.+|+.+...-..++- .......+-+.+.... ...+....+.+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~H-------------Fh~Fm~~vh~~l~~~~---~~~~~l~~va~~l 124 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVH-------------FHEFMLDVHSRLHQLR---GQDDPLPQVADEL 124 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccc-------------ccHHHHHHHHHHHHHh---CCCccHHHHHHHH
Confidence 46778899999999999999999975432111111 1123333333331111 2222455666777
Q ss_pred ccCceEEEecCCC--Chh---hhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 284 QRMKVFIVLDDVN--KYG---QLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 284 ~~kr~LLVLDdv~--~~~---~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
.++..||.||.+. +.. -+..+...+- ..|. +||+|.|.
T Consensus 125 ~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 125 AKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred HhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 7888899999873 332 2344444332 3455 55555444
No 326
>PRK13947 shikimate kinase; Provisional
Probab=94.18 E-value=0.036 Score=53.30 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.6
Q ss_pred EEEEEccCCCchhHHHHHHHHHhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
-|.|.|++|+||||+|+.+++++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998864
No 327
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.17 E-value=0.032 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998865
No 328
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.17 E-value=0.05 Score=52.40 Aligned_cols=45 Identities=27% Similarity=0.291 Sum_probs=34.2
Q ss_pred ccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 184 LIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 184 ~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
+||.+..+.++.+.+..-......|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888887754334467779999999999999999884
No 329
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.17 E-value=0.067 Score=52.97 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=29.0
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+...+++|+|++|+||||||+.+...+...-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 35679999999999999999999997754433344443
No 330
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.14 E-value=0.038 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.7
Q ss_pred EEEEEccCCCchhHHHHHHHHHhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
+|.|.|++|+||||+|+.+++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998753
No 331
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.13 E-value=0.11 Score=55.68 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=68.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhccc-------ceEEEe------eecccccccCCHHHHHHHHHHHhcC------
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFE-------GKYFMA------NVREESEKCGGLVHLRNQVLSKLLG------ 265 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-------~~~~v~------~~~~~~~~~~~l~~l~~~ll~~l~~------ 265 (709)
.-++.|+|.+|+||||+.+.+.......-+ ..+=+. .+....+...+-..+++++.+..+.
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Ave 488 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVE 488 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHH
Confidence 458899999999999999998765322211 000000 0001111112222344444333322
Q ss_pred -------C--------CCCCCCCC-hhHHHHHHHccCceEEEecCCCC-hh--hhhhhhcCCCCC--CCCeEEEEEcCch
Q 005191 266 -------E--------NFDIGTPK-IPQYIRDRLQRMKVFIVLDDVNK-YG--QLEYFDGGLDRF--GPGSRIIVTTRDK 324 (709)
Q Consensus 266 -------~--------~~~~~~~~-~~~~l~~~L~~kr~LLVLDdv~~-~~--~~~~l~~~l~~~--~~gsrIIvTTR~~ 324 (709)
. ..+.+..+ -...|...+.+++-+++.|.... .+ ....+...+... ..|+.+++.|+.+
T Consensus 489 ILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp 568 (593)
T COG2401 489 ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP 568 (593)
T ss_pred HHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence 1 01122222 45567777888989999998742 11 111111111111 2577788888888
Q ss_pred hhhhhcCcceE
Q 005191 325 TILERYGTHRI 335 (709)
Q Consensus 325 ~v~~~~~~~~~ 335 (709)
++...+.++..
T Consensus 569 Ev~~AL~PD~l 579 (593)
T COG2401 569 EVGNALRPDTL 579 (593)
T ss_pred HHHhccCCcee
Confidence 88877766544
No 332
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=1.4 Score=51.12 Aligned_cols=93 Identities=22% Similarity=0.320 Sum_probs=54.0
Q ss_pred CccccchhhhHHHhhhhc----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCH
Q 005191 183 GLIGLESHVEQVRSLLAI----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGL 252 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l 252 (709)
..=|.++-..+|.+-+.. +-....-|.++|++|.|||-||++|+.+.+-.| +. + . +.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS-V---K----GP 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS-V---K----GP 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee-e---c----CH
Confidence 344566666666665532 112245688999999999999999998865443 22 1 1 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCC
Q 005191 253 VHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNK 297 (709)
Q Consensus 253 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~ 297 (709)
+++...+ ++ ++....+...+.-..++|+|.||.+++
T Consensus 740 -ELLNMYV---Gq-----SE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 -ELLNMYV---GQ-----SEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -HHHHHHh---cc-----hHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1211111 11 111134444444455899999999964
No 333
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.07 E-value=0.24 Score=49.33 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=34.4
Q ss_pred HHHHHccCceEEEecCCCC---hhhhh-hhhcCCCCCC-C-CeEEEEEcCchhhhhhcCcceEEEec
Q 005191 279 IRDRLQRMKVFIVLDDVNK---YGQLE-YFDGGLDRFG-P-GSRIIVTTRDKTILERYGTHRIYEVE 339 (709)
Q Consensus 279 l~~~L~~kr~LLVLDdv~~---~~~~~-~l~~~l~~~~-~-gsrIIvTTR~~~v~~~~~~~~~~~L~ 339 (709)
+...+..++-++++|+... ....+ .+...+.... . +..||++|.+...... .+.++.+.
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 4556677899999999842 22223 3333222212 2 5578888888766543 34555554
No 334
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.07 E-value=0.83 Score=50.92 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=44.7
Q ss_pred ccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhh-hcccceEEEeeecccccccCCHHHHHHHHHHH
Q 005191 184 LIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFS-QKFEGKYFMANVREESEKCGGLVHLRNQVLSK 262 (709)
Q Consensus 184 ~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~ 262 (709)
..|...-...|.+++. +-....++.|.|.+|+|||++|..++.... .+-..++|++ .. ....++...++..
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-lE------m~~~~l~~Rl~~~ 245 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-LE------MSAEQLGERLLAS 245 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-CC------CCHHHHHHHHHHH
Confidence 4444545555555554 333467899999999999999999997764 2223344444 11 3345566666655
Q ss_pred h
Q 005191 263 L 263 (709)
Q Consensus 263 l 263 (709)
.
T Consensus 246 ~ 246 (421)
T TIGR03600 246 K 246 (421)
T ss_pred H
Confidence 4
No 335
>PRK05439 pantothenate kinase; Provisional
Probab=94.05 E-value=0.094 Score=55.45 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=25.5
Q ss_pred CCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 202 LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...+-+|+|.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999998886643
No 336
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.66 Score=53.23 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=77.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHh-cCCCCCCCCCChhHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKL-LGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l-~~~~~~~~~~~~~~~l~~~L 283 (709)
..-|.++|++|.|||-||.+++....-+ |+. + .+. +++... +. +.........+.-
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-v-------KGP-----ElL~KyIGa-----SEq~vR~lF~rA~ 757 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-V-------KGP-----ELLSKYIGA-----SEQNVRDLFERAQ 757 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-e-------cCH-----HHHHHHhcc-----cHHHHHHHHHHhh
Confidence 3468899999999999999988763222 233 1 111 122222 21 1111333344444
Q ss_pred ccCceEEEecCCCCh-------------hhhhhhhcCCCCC--CCCeEEEE-EcCchhhhhhc----CcceEEEecCCCh
Q 005191 284 QRMKVFIVLDDVNKY-------------GQLEYFDGGLDRF--GPGSRIIV-TTRDKTILERY----GTHRIYEVEGLNC 343 (709)
Q Consensus 284 ~~kr~LLVLDdv~~~-------------~~~~~l~~~l~~~--~~gsrIIv-TTR~~~v~~~~----~~~~~~~L~~L~~ 343 (709)
.-++|+|.+|..++. ....+++..+... -.|.-|+- |||..-+-+.. ..++.+.-+.-+.
T Consensus 758 ~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 758 SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence 569999999999642 2345565554411 24555554 55654322211 1233334444455
Q ss_pred HHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchH
Q 005191 344 NEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLA 381 (709)
Q Consensus 344 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLA 381 (709)
.|-++++....-....+. .-..+.++.++.|.--|
T Consensus 838 ~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 838 PERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCchh
Confidence 566666654431111111 12245666667666543
No 337
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.02 E-value=0.089 Score=62.76 Aligned_cols=110 Identities=13% Similarity=0.035 Sum_probs=56.0
Q ss_pred cCceEEEecCCCC---hhhhhh----hhcCCCCCCCCeEEEEEcCchhhhhhcC-cceE--EEecCCChHHHHHHhhhcc
Q 005191 285 RMKVFIVLDDVNK---YGQLEY----FDGGLDRFGPGSRIIVTTRDKTILERYG-THRI--YEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 285 ~kr~LLVLDdv~~---~~~~~~----l~~~l~~~~~gsrIIvTTR~~~v~~~~~-~~~~--~~L~~L~~~ea~~Lf~~~a 354 (709)
..+-|+++|.... ...... ++..+. ..|+.+|+||....+..... ...+ ..+. ++. +... +..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE
Confidence 4789999999843 222222 222222 35778999999886543211 1111 1111 111 1111 11111
Q ss_pred cccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhcCCChhhHHHHHHHh
Q 005191 355 FKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFHRKSKPDWVNTLNNL 404 (709)
Q Consensus 355 ~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~~~~~ew~~~L~~L 404 (709)
....+. ...+-.|++++ |+|-.+..-|..+.+....++...+++|
T Consensus 476 -~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L 520 (771)
T TIGR01069 476 -LKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKL 520 (771)
T ss_pred -CCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 111222 12366676665 8888888888877665445555555554
No 338
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.99 E-value=0.078 Score=50.53 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=29.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEE
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFM 239 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v 239 (709)
+..+|-++|.+|.||||||.++.+.+....-....+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 467999999999999999999999887764443333
No 339
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.99 E-value=0.27 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 340
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.97 E-value=0.074 Score=57.66 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=54.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccc---eEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEG---KYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRD 281 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 281 (709)
...|.|+|+.|.||||++..+.+.+....+. .+.+.+.-+. .+..... ....+...............++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~-----~~~~~~~-~~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF-----VYDEIET-ISASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE-----ecccccc-ccceeeeeeccccccCHHHHHHH
Confidence 4799999999999999999998877544332 2222211111 0111000 00000001111111226677888
Q ss_pred HHccCceEEEecCCCChhhhhhhh
Q 005191 282 RLQRMKVFIVLDDVNKYGQLEYFD 305 (709)
Q Consensus 282 ~L~~kr~LLVLDdv~~~~~~~~l~ 305 (709)
.|+..+-.+++..+.+.+..+..+
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHH
Confidence 899999999999998877765443
No 341
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.97 E-value=0.07 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.7
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
-|.|.|++|+||||+|+.+++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998874
No 342
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.63 Score=46.46 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=37.7
Q ss_pred hhHHHHHHHccCceEEEecCCCChhh---hhhhhcCCCC-CCCCeEEEEEcCchhhhhhcCcceEE
Q 005191 275 IPQYIRDRLQRMKVFIVLDDVNKYGQ---LEYFDGGLDR-FGPGSRIIVTTRDKTILERYGTHRIY 336 (709)
Q Consensus 275 ~~~~l~~~L~~kr~LLVLDdv~~~~~---~~~l~~~l~~-~~~gsrIIvTTR~~~v~~~~~~~~~~ 336 (709)
....+.+.+--+|-+.|||.-++--+ ++.+...+.. ..+|+-+|+.|....++....++.++
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 45556666666789999999876333 3222221111 13466777777778788877655544
No 343
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.96 E-value=0.14 Score=50.07 Aligned_cols=118 Identities=16% Similarity=0.063 Sum_probs=61.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHH--HHh-cCCCC--CCCCC-C----
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVL--SKL-LGENF--DIGTP-K---- 274 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll--~~l-~~~~~--~~~~~-~---- 274 (709)
...|.|+|..|-||||.|...+-+...+--.+..+.-+.... . .+-...++.+- ... .+... ...+. +
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~-~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-S-TGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-c-cCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 468889999999999999999887655433333333222211 1 22223333210 000 01110 00011 0
Q ss_pred ---hhHHHHHHHcc-CceEEEecCCCC-----hhhhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 275 ---IPQYIRDRLQR-MKVFIVLDDVNK-----YGQLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 275 ---~~~~l~~~L~~-kr~LLVLDdv~~-----~~~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
..+..++.+.. +-=|||||.+.. .-..+.+...+....++..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12223334444 445999999832 222333444343345678999999986
No 344
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.2 Score=50.56 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=38.1
Q ss_pred CccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 183 GLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..=|-.++++.|.+.... +-+.+.-|.++|++|.|||-+|++++++. ..+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfir 241 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIR 241 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEe
Confidence 455667777777665432 22346778899999999999999999974 345665
No 345
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.96 E-value=0.28 Score=59.44 Aligned_cols=225 Identities=15% Similarity=0.150 Sum_probs=107.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcc----cceEEEeeecccccccCCHH--HHHHHHHHHhcCCCCCCCCCChhHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKF----EGKYFMANVREESEKCGGLV--HLRNQVLSKLLGENFDIGTPKIPQY 278 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~v~~~~~~~~~~~~l~--~l~~~ll~~l~~~~~~~~~~~~~~~ 278 (709)
..-+.|+|.+|.||||+...++-....+. +..+++. +........... .+..-+...+..... .......
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~-l~~~~~~~~~~~q~~~~~~l~~~~~~~~~---~~~~~~~ 297 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLL-LNAFALARKFEKQLSLIDYLAEELFSQGI---AKQLIEA 297 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeee-chhHHHhhhhHhhccHHHHHHHHHhccCC---cchhhHH
Confidence 34788999999999999999987644332 2223332 111000001111 222222222211111 0112222
Q ss_pred HHHHHccCceEEEecCCCChh---------hhhhhhcCCCCCCCCeEEEEEcCchhhhhhcCcceEEEecCCChHHHHHH
Q 005191 279 IRDRLQRMKVFIVLDDVNKYG---------QLEYFDGGLDRFGPGSRIIVTTRDKTILERYGTHRIYEVEGLNCNEALRL 349 (709)
Q Consensus 279 l~~~L~~kr~LLVLDdv~~~~---------~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~~~~~~~~L~~L~~~ea~~L 349 (709)
..+.+...++++.+|.++... .+..+.+. -+.+++|+|+|....-........+++..+.+..-...
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~ 373 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQF 373 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHH
Confidence 357888999999999986432 12333333 35789999999875443332334445555554433322
Q ss_pred hh--------hcccccCCCC--hhhHH---HHHHHHHHhcCCchHHHHHhhhhcC------CChhhHHHHHHHhhcCCCC
Q 005191 350 FC--------SCAFKENHCP--EDLLK---HSETAAHYAKGNPLALQVLGSSFHR------KSKPDWVNTLNNLKRISDS 410 (709)
Q Consensus 350 f~--------~~a~~~~~~~--~~~~~---~~~~Iv~~~gGlPLAL~~la~~L~~------~~~~ew~~~L~~L~~~~~~ 410 (709)
.. ...++..... ..... -..+-.+.....|+.|.+.+..-.. ...+-++..++.+-...+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~ 453 (824)
T COG5635 374 ILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDE 453 (824)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccch
Confidence 21 1111111111 01111 1122334447889999888744431 2344566666654332221
Q ss_pred cHHhHHHHhhcCCCH-HHHH-HHHhcccc
Q 005191 411 DIYGVLKIGYDELSW-EEKN-LFLDIACF 437 (709)
Q Consensus 411 ~i~~~L~~Sy~~L~~-~~k~-~fl~lA~F 437 (709)
.=.......|..+.. .... ++..+|.+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~la~~ 482 (824)
T COG5635 454 TRGIKWSKTYAKLTTDQQDKWLLQLLAAL 482 (824)
T ss_pred hhhhcchhhhcccchHHHHHHHHHHHHHH
Confidence 111223344544433 3334 55555443
No 346
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.95 E-value=0.3 Score=48.89 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....++|.|..|.|||||.+.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 347
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.92 E-value=0.1 Score=52.82 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=34.5
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.|-++|..+-+....+.|.|.+|+|||+||.+++.....+-...+|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 344445444445789999999999999999998765444445666765
No 348
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.90 E-value=0.2 Score=49.39 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
....++|.|+.|.|||||.+.++.-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999987754
No 349
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.89 E-value=0.062 Score=54.34 Aligned_cols=48 Identities=29% Similarity=0.290 Sum_probs=34.5
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEEe
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v~ 240 (709)
.|-++|..+-+...++.|.|.+|+|||+|+.+++.....+ -..++|+.
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 3445554444557899999999999999999988765555 55666666
No 350
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.86 E-value=0.3 Score=57.55 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
....|+|+|.+|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998865
No 351
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.85 E-value=0.065 Score=52.30 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=29.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEE
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFM 239 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v 239 (709)
.+++.|+|++|+|||||+..+......+|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 47899999999999999999999887777544443
No 352
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.85 E-value=0.2 Score=48.84 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
....++|.|..|.|||||.+.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999988753
No 353
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.84 E-value=0.048 Score=52.93 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.0
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 354
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.84 E-value=0.047 Score=53.60 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998865
No 355
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.82 E-value=0.14 Score=54.69 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=25.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
+..+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999877654
No 356
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.81 E-value=0.097 Score=56.92 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=54.9
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhccc-ceEE-EeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFE-GKYF-MANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~-v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
..+.|+|+.|.||||++..+.+.+....+ ..++ +.+..+..- .....+ .. ........+.......++..|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~--~~~~~~----~~-~~q~evg~~~~~~~~~l~~aL 222 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL--GSPDDL----LP-PAQSQIGRDVDSFANGIRLAL 222 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc--CCCcee----ec-ccccccCCCccCHHHHHHHhh
Confidence 47889999999999999999887654432 2232 221111100 000000 00 000011111123667788899
Q ss_pred ccCceEEEecCCCChhhhhhhhc
Q 005191 284 QRMKVFIVLDDVNKYGQLEYFDG 306 (709)
Q Consensus 284 ~~kr~LLVLDdv~~~~~~~~l~~ 306 (709)
+..+=.|+++.+.+.+..+..+.
T Consensus 223 R~~PD~I~vGEiRd~et~~~al~ 245 (372)
T TIGR02525 223 RRAPKIIGVGEIRDLETFQAAVL 245 (372)
T ss_pred ccCCCEEeeCCCCCHHHHHHHHH
Confidence 99999999999998887775443
No 357
>PRK06217 hypothetical protein; Validated
Probab=93.81 E-value=0.045 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.2
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.|.|.|.+|.||||||+++...+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999875
No 358
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.80 E-value=0.053 Score=54.08 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=24.2
Q ss_pred ccCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 200 IGLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 200 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.+....+.+.|+|++|+|||||+..+...
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456789999999999999999998754
No 359
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.79 E-value=0.042 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=20.3
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36789999999999999998863
No 360
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.78 E-value=0.078 Score=53.57 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
+.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 468999999999999999998775
No 361
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.76 E-value=0.07 Score=51.97 Aligned_cols=33 Identities=24% Similarity=0.139 Sum_probs=26.6
Q ss_pred EEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+.|.|++|+|||+||.+++.....+-..+.|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999999999887655545666665
No 362
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.75 E-value=0.041 Score=54.40 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=20.9
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+|+|.|++|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 363
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.74 E-value=0.1 Score=55.48 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=60.3
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
....+.|.|..|.|||||++.+...+.... ..+.+.+..+.......... +. ..............+.+...|
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~----l~--~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH----LF--YSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE----EE--ecCCCCCcCccCHHHHHHHHh
Confidence 346899999999999999999887654332 23333322221111000000 00 001111111223666777888
Q ss_pred ccCceEEEecCCCChhhhhhhhcCCCCCCCCeE-EEEEcCch
Q 005191 284 QRMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSR-IIVTTRDK 324 (709)
Q Consensus 284 ~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsr-IIvTTR~~ 324 (709)
+..+-.+++|.+...+.++.+. ... .|.. ++.|+...
T Consensus 216 r~~pd~ii~gE~r~~e~~~~l~-a~~---~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDFIR-AVN---TGHPGSITTLHAG 253 (308)
T ss_pred cCCCCeEEEeccCCHHHHHHHH-HHh---cCCCeEEEEEeCC
Confidence 8899999999998866655433 322 2332 45666544
No 364
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.73 E-value=0.046 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 365
>PRK15115 response regulator GlrR; Provisional
Probab=93.70 E-value=1.2 Score=49.94 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=34.5
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..++|....+..+.+....-......+.|.|.+|+|||++|+.+.+.
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 35788887777766655432233456779999999999999988774
No 366
>PRK05973 replicative DNA helicase; Provisional
Probab=93.69 E-value=0.1 Score=52.96 Aligned_cols=37 Identities=19% Similarity=0.048 Sum_probs=29.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
...++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4678999999999999999999887655544555554
No 367
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.68 E-value=0.053 Score=51.10 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=44.5
Q ss_pred EEccCCCchhHHHHHHHHHhhhcccceEEEe---eecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHcc-
Q 005191 210 IWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA---NVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQR- 285 (709)
Q Consensus 210 I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~---~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~- 285 (709)
|.|+||+||||+|+.++.++. | ..++ .++....... .+...+...+. .....++.-....+...+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is~~~llr~~~~~~s---~~g~~i~~~l~-~g~~vp~~~v~~ll~~~l~~~ 71 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHISVGDLLREEIKSDS---ELGKQIQEYLD-NGELVPDELVIELLKERLEQP 71 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEEHHHHHHHHHHTTS---HHHHHHHHHHH-TTSS--HHHHHHHHHHHHHSG
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceechHHHHHHHHhhhh---HHHHHHHHHHH-hhccchHHHHHHHHHHHHhhh
Confidence 689999999999999998741 2 2232 1111111101 11122222221 11111211155566666553
Q ss_pred -CceEEEecCC-CChhhhhhhhc
Q 005191 286 -MKVFIVLDDV-NKYGQLEYFDG 306 (709)
Q Consensus 286 -kr~LLVLDdv-~~~~~~~~l~~ 306 (709)
..--+|||+. .+..+.+.+..
T Consensus 72 ~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 72 PCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp GTTTEEEEESB-SSHHHHHHHHH
T ss_pred cccceeeeeeccccHHHHHHHHH
Confidence 2456789999 55666666554
No 368
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.68 E-value=0.045 Score=53.61 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 369
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.67 E-value=0.14 Score=54.74 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=30.1
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
++.+.+....+...+|+|.|.+|+|||||+..+...+...
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444443323467899999999999999999998877654
No 370
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.66 E-value=0.22 Score=49.35 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999998775
No 371
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.66 E-value=0.14 Score=50.75 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=57.0
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhc---c-cceEEEeee-cccccccCCHHHHHHHHHHHhcCCCCCCCCCC-hhHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQK---F-EGKYFMANV-REESEKCGGLVHLRNQVLSKLLGENFDIGTPK-IPQYI 279 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~---f-~~~~~v~~~-~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l 279 (709)
.-..|.|++|+|||||.+.+++-++.. | +..+-+.+- ++......+..+. ++...+ +.-+.. ..+-+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~--~~g~R~-----dVld~cpk~~gm 210 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQH--GRGRRM-----DVLDPCPKAEGM 210 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchh--hhhhhh-----hhcccchHHHHH
Confidence 336788999999999999999876554 3 223322211 1111100111111 011111 111111 12222
Q ss_pred HHHHc-cCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCc
Q 005191 280 RDRLQ-RMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRD 323 (709)
Q Consensus 280 ~~~L~-~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~ 323 (709)
....+ ..+=++|.|.+...++..++...+ ..|.++|.|..-
T Consensus 211 mmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 211 MMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred HHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 22222 357799999998877777776654 467777777653
No 372
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.64 E-value=0.23 Score=48.46 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...++.|.|.+|.||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987653
No 373
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.62 E-value=0.095 Score=57.23 Aligned_cols=50 Identities=22% Similarity=0.184 Sum_probs=34.8
Q ss_pred CccccchhhhHHHhhhhcc------------CCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 183 GLIGLESHVEQVRSLLAIG------------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.++|.++..+.+.-.+... ...++-|.++|++|+|||++|+.++..+...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4667766666654433311 1124678899999999999999999976544
No 374
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.60 E-value=0.068 Score=53.91 Aligned_cols=116 Identities=11% Similarity=-0.038 Sum_probs=57.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHH-HhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCC----hhHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN-QFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPK----IPQY 278 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~-~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~----~~~~ 278 (709)
..+++.|.|+.|.||||+.+.+.- .+..+-...+|-.... - ....+++..++..+.-..... -...
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~---~------~~~~~i~~~~~~~d~~~~~~StF~~e~~~ 100 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSAT---L------SIFDSVLTRMGASDSIQHGMSTFMVELSE 100 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceE---E------eccceEEEEecCccccccccchHHHHHHH
Confidence 457889999999999999998876 3333322222221100 0 011111122211111111111 1222
Q ss_pred HHHHHc--cCceEEEecCCCC----hh--h-hhhhhcCCCCCCCCeEEEEEcCchhhhhh
Q 005191 279 IRDRLQ--RMKVFIVLDDVNK----YG--Q-LEYFDGGLDRFGPGSRIIVTTRDKTILER 329 (709)
Q Consensus 279 l~~~L~--~kr~LLVLDdv~~----~~--~-~~~l~~~l~~~~~gsrIIvTTR~~~v~~~ 329 (709)
+...+. .++-|++||.... .+ . ...+...+.. ..++.+|++|....+...
T Consensus 101 ~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 101 TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHH
Confidence 333333 4789999999731 11 1 1223333322 147889999999876543
No 375
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.57 E-value=0.2 Score=57.45 Aligned_cols=50 Identities=18% Similarity=0.040 Sum_probs=38.5
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.....++|....+.++.+.+..-......|.|+|..|+||+.+|+.+...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 44568999999888888777542223445889999999999999996553
No 376
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.56 E-value=0.071 Score=60.50 Aligned_cols=57 Identities=33% Similarity=0.420 Sum_probs=41.6
Q ss_pred CCccccchhhhHHHhhhhc---cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 182 DGLIGLESHVEQVRSLLAI---GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..+.--.+-++++..||.. +....+++.|+|++|+||||.++.+++.+ .|+..-|..
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 3445555678888888874 22346799999999999999999999875 344455543
No 377
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.56 E-value=0.048 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=21.7
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.++|+|++|+|||||++.+.+.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 36899999999999999998865433
No 378
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.54 E-value=0.048 Score=55.02 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.1
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
+|+|.|.+|+||||||+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4899999999999999999987753
No 379
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.53 E-value=0.038 Score=54.13 Aligned_cols=21 Identities=33% Similarity=0.040 Sum_probs=18.7
Q ss_pred EEEEEccCCCchhHHHHHHHH
Q 005191 207 LVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~ 227 (709)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999884
No 380
>PRK04328 hypothetical protein; Provisional
Probab=93.52 E-value=0.13 Score=53.05 Aligned_cols=48 Identities=23% Similarity=0.235 Sum_probs=35.7
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.|-++|..+-+...++.|.|.+|.|||+||.++......+-..++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344555544456789999999999999999998876545555667776
No 381
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.48 E-value=0.059 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.3
Q ss_pred EEEEccCCCchhHHHHHHHHHh
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (709)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998875
No 382
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.44 E-value=0.64 Score=46.20 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|..|.|||||++.++..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4578999999999999999998753
No 383
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.43 E-value=0.029 Score=40.98 Aligned_cols=29 Identities=10% Similarity=0.027 Sum_probs=25.7
Q ss_pred ccccCCCcCccCCccCCccccccccccceee
Q 005191 575 DFFIIPYQLVIGKGGGNKTNDFRAAAADVIQ 605 (709)
Q Consensus 575 ~i~~LP~~~~Ig~L~~LetLDlr~T~v~~~~ 605 (709)
.|+.||. +|++|.+|++||++++.+..+|
T Consensus 12 ~i~~l~~--~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 12 QITDLPP--ELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp S-SSHGG--HGTTCTTSSEEEETSSCCSBEG
T ss_pred CCcccCc--hHhCCCCCCEEEecCCCCCCCc
Confidence 5778999 9999999999999999998775
No 384
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.41 E-value=0.1 Score=55.74 Aligned_cols=57 Identities=26% Similarity=0.317 Sum_probs=38.7
Q ss_pred CCCCccccchhhhH---HHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccce
Q 005191 180 DSDGLIGLESHVEQ---VRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGK 236 (709)
Q Consensus 180 ~~~~~vGR~~el~~---L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 236 (709)
....+||..+..+. +.++...+.=..+.+.|.|++|.|||+||..+++.+....+..
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~ 81 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFV 81 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCee
Confidence 45789998766554 3444444433468999999999999999999999988765543
No 385
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=93.40 E-value=0.45 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...++++|++|+|||||...+..+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC
Confidence 456789999999999999998753
No 386
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.39 E-value=0.094 Score=53.28 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=32.0
Q ss_pred HHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 194 VRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 194 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+...+..+-+...++.|.|++|+||||||.+++.....+-...+|+.
T Consensus 13 ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 13 LHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred eehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 33344333345679999999999999999888776544334555655
No 387
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.37 E-value=0.1 Score=57.42 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...++|.|++|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 46899999999999999998853
No 388
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.36 E-value=0.089 Score=50.74 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=25.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...+++|+|..|+|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999887653
No 389
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.36 E-value=0.11 Score=56.65 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=36.3
Q ss_pred CccccchhhhHHHhhhhc---------c---CCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 183 GLIGLESHVEQVRSLLAI---------G---LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~~---------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.++|.+...+.+..++.. + ......+.+.|++|+|||+||+.++..+...
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 577777777777665532 0 0114678999999999999999999876443
No 390
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.35 E-value=0.071 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..++.|.|.+|+||||+|+.++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 391
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.34 E-value=0.11 Score=48.47 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=26.6
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEEe
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFMA 240 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v~ 240 (709)
++|.|+|..|+|||||++.+.+.+..+ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 478999999999999999999988754 55444544
No 392
>PRK13948 shikimate kinase; Provisional
Probab=93.28 E-value=0.072 Score=51.96 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
..+.|.+.|+.|+||||+++.+++++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998763
No 393
>PRK13949 shikimate kinase; Provisional
Probab=93.27 E-value=0.065 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.6
Q ss_pred EEEEEccCCCchhHHHHHHHHHhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
-|.|.|++|.||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 394
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.25 E-value=0.12 Score=60.05 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=54.2
Q ss_pred CCCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh-cccceEEEeeecccccccCCHHHH
Q 005191 177 AISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ-KFEGKYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 177 ~~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~v~~~~~~~~~~~~l~~l 255 (709)
++..-+.++|.+..++.|...+... +.+.++|++|+||||+|+.+++.+.. .++...|..+.. .....+
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~------~~~~~~ 95 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPE------DPNNPK 95 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCC------cchHHH
Confidence 3444567899988888888777633 47889999999999999999987643 346777776422 334455
Q ss_pred HHHHHHHh
Q 005191 256 RNQVLSKL 263 (709)
Q Consensus 256 ~~~ll~~l 263 (709)
.+.+....
T Consensus 96 ~~~v~~~~ 103 (637)
T PRK13765 96 IRTVPAGK 103 (637)
T ss_pred HHHHHHhc
Confidence 55555443
No 395
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.98 Score=45.66 Aligned_cols=52 Identities=23% Similarity=0.409 Sum_probs=35.4
Q ss_pred CCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 182 DGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
+.+=|.++.+++|.+.+-- +-..+.-+..+|++|.|||-+|++.+.+....|
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF 233 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF 233 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH
Confidence 3455666777766665421 112356788999999999999999887654433
No 396
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.20 E-value=0.083 Score=56.78 Aligned_cols=48 Identities=27% Similarity=0.306 Sum_probs=38.1
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
..++|+++.+..+...+..+ +.+.+.|++|+|||+||+.++..+...|
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 34889888888777666633 5678999999999999999999876443
No 397
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.20 E-value=0.12 Score=54.72 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=34.5
Q ss_pred CCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 181 SDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.+.++=..+....+...+.. .+.|.|.|++|+||||+|+.++..+...
T Consensus 44 d~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~ 91 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWP 91 (327)
T ss_pred CCCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCC
Confidence 33444444455666666653 2468999999999999999999987543
No 398
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.19 E-value=0.068 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.|.|.|++|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999973
No 399
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.18 E-value=0.086 Score=54.23 Aligned_cols=26 Identities=31% Similarity=0.555 Sum_probs=22.5
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
+|.++|++|+||||+|+.++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999887543
No 400
>PHA02244 ATPase-like protein
Probab=93.18 E-value=0.081 Score=56.87 Aligned_cols=50 Identities=18% Similarity=0.074 Sum_probs=32.1
Q ss_pred CCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 181 SDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...++|....+......+..--....-|.|+|++|+|||+||+++++...
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45577766655433332221111223577899999999999999998753
No 401
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=0.16 Score=58.35 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=31.9
Q ss_pred hhHHHHHHHccCceEEEecCCCC------hhhhhhhhcCCCCCCCCeEEEEEcCchhhhh
Q 005191 275 IPQYIRDRLQRMKVFIVLDDVNK------YGQLEYFDGGLDRFGPGSRIIVTTRDKTILE 328 (709)
Q Consensus 275 ~~~~l~~~L~~kr~LLVLDdv~~------~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~ 328 (709)
..-.+.+.|-++|.+||||++-+ ...++.-+..+. ...+.|+|+-|-..+-.
T Consensus 611 QRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~--~~rTVlvIAHRLSTV~~ 668 (716)
T KOG0058|consen 611 QRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM--QGRTVLVIAHRLSTVRH 668 (716)
T ss_pred HHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh--cCCeEEEEehhhhHhhh
Confidence 34456777888999999999832 222333332222 23677788888665443
No 402
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.15 E-value=0.63 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
..++-.|+|..|+|||||...++-
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHh
Confidence 357889999999999999999875
No 403
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.14 E-value=0.068 Score=50.83 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=18.5
Q ss_pred EEEEEccCCCchhHHHHHHH
Q 005191 207 LVGIWGMGGIGKTTIAGVVF 226 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~ 226 (709)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 404
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.14 E-value=0.47 Score=46.42 Aligned_cols=27 Identities=33% Similarity=0.257 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
..++.|.|++|+|||+++.+++..+..
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 358889999999999999999887654
No 405
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.13 E-value=0.1 Score=62.46 Aligned_cols=110 Identities=16% Similarity=0.081 Sum_probs=56.4
Q ss_pred cCceEEEecCCCC---hhhh----hhhhcCCCCCCCCeEEEEEcCchhhhhhcCcc-e--EEEecCCChHHHHHHhhhcc
Q 005191 285 RMKVFIVLDDVNK---YGQL----EYFDGGLDRFGPGSRIIVTTRDKTILERYGTH-R--IYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 285 ~kr~LLVLDdv~~---~~~~----~~l~~~l~~~~~gsrIIvTTR~~~v~~~~~~~-~--~~~L~~L~~~ea~~Lf~~~a 354 (709)
..+-|+++|.... ...- ..++..+. ..|+.+|+||....+....... . ...+. ++ .+..... ...
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d-~~~l~~~-Ykl 480 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FD-EETLRPT-YRL 480 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Ee-cCcCcEE-EEE
Confidence 4678999999842 2222 22222222 2477899999988765533211 1 11111 11 1111111 111
Q ss_pred cccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhcCCChhhHHHHHHHh
Q 005191 355 FKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFHRKSKPDWVNTLNNL 404 (709)
Q Consensus 355 ~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~~~~~ew~~~L~~L 404 (709)
....+. ...+-.|++++ |+|-.+..-|..+......+....+++|
T Consensus 481 -~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l 525 (782)
T PRK00409 481 -LIGIPG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASL 525 (782)
T ss_pred -eeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 111122 12356676665 8888888888777665555555555554
No 406
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.12 E-value=0.11 Score=59.90 Aligned_cols=51 Identities=20% Similarity=0.198 Sum_probs=39.6
Q ss_pred CCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 181 SDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
++..+.|.+-.+.|.+..........+|.|+|++|+||||+|+.++.++..
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 345666766667777766655556679999999999999999999998754
No 407
>PRK15453 phosphoribulokinase; Provisional
Probab=93.11 E-value=0.13 Score=53.33 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=24.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...+|+|.|.+|+||||+|+.+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5679999999999999999999876643
No 408
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.11 E-value=0.058 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEEccCCCchhHHHHHHHHHh
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+.|.|++|+||||+|+.+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 409
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.10 E-value=0.29 Score=54.42 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=26.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh--hcccceEEEe
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS--QKFEGKYFMA 240 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~v~ 240 (709)
.+++.++|++|+||||++..++..+. ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999988765 2223344444
No 410
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.08 E-value=0.16 Score=53.68 Aligned_cols=88 Identities=16% Similarity=0.219 Sum_probs=52.8
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcc--cceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKF--EGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
..+.|+|..|.||||++..+...+.... ...+-+.+..+......+. -.+.. ........+.++..|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~--------v~~~~---~~~~~~~~~~l~~aL 201 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNV--------VQLRT---SDDAISMTRLLKATL 201 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCE--------EEEEe---cCCCCCHHHHHHHHh
Confidence 5678999999999999999998775532 2222232221111000000 00000 001113667888889
Q ss_pred ccCceEEEecCCCChhhhhhh
Q 005191 284 QRMKVFIVLDDVNKYGQLEYF 304 (709)
Q Consensus 284 ~~kr~LLVLDdv~~~~~~~~l 304 (709)
+..+=.||+..+.+.+.++.+
T Consensus 202 R~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 202 RLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred cCCCCEEEEeccCCHHHHHHH
Confidence 999999999999887766544
No 411
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.08 E-value=0.67 Score=45.94 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+++|.|+.|.|||||++.++...
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 45799999999999999999988743
No 412
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.07 E-value=0.33 Score=51.56 Aligned_cols=48 Identities=29% Similarity=0.305 Sum_probs=35.5
Q ss_pred HHHhhhh-ccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 193 QVRSLLA-IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.|...|. .+-+..+++-|+|+.|+||||||..+....+..-...+|+.
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 3444454 23345789999999999999999999988766656677776
No 413
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.02 E-value=0.11 Score=49.30 Aligned_cols=35 Identities=20% Similarity=0.519 Sum_probs=28.9
Q ss_pred hhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 189 SHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 189 ~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..+++|.+.|. + +++++.|.+|+|||||...+...
T Consensus 24 ~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45677777776 3 78999999999999999988764
No 414
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.02 E-value=0.14 Score=51.08 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=25.9
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.|+|+|-||+||||+|..++.++.++-...+.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvV 35 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVV 35 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 5899999999999999997777665543344444
No 415
>PRK13975 thymidylate kinase; Provisional
Probab=92.99 E-value=0.084 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.4
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
..|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998754
No 416
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=92.99 E-value=0.33 Score=52.61 Aligned_cols=179 Identities=18% Similarity=0.250 Sum_probs=90.7
Q ss_pred HHHHHHHHHhCCCceEE---cC------CCCCCCcccHHHHHHHHhccceeEEeccCcccchhhHHHHHHHHHhh-hhCC
Q 005191 22 LSHLVVALQEKKIKTFI---DE------ELTRGDQISPALVKAIEESMISVIIFSKNYASSKWCLDELVKILKCH-KKNI 91 (709)
Q Consensus 22 ~~~L~~~L~~~g~~~~~---d~------~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~wc~~El~~~~~~~-~~~~ 91 (709)
.+.|..-.+..|+.|.- .. ..--|.--.++|.+.+++....+|||-..-..| -...|..++.+. -.+.
T Consensus 19 ~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~p~--q~~nl~~~~~~~v~Dr~ 96 (351)
T TIGR03156 19 LEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHELSPS--QERNLEKALGCRVIDRT 96 (351)
T ss_pred HHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCCCHH--HHHHHHHHhCCcccchH
Confidence 55566566677887643 11 112244446788888888899888887554333 345566655443 1122
Q ss_pred ceeEeEEeecCCCcccccCCchhhhhhhhhhhhccchhHHHHHHHHHHHhhhccCCCCCCCCcchhhhHHHHHHHHHhhh
Q 005191 92 QLVIPIFYNVDPSVVRNQTGSFKDAFVKHDKQFNKKMPEKVQKWRAVLTEASNLSGWDSNTTRPDAKLVKEITADILEKL 171 (709)
Q Consensus 92 ~~vlPvf~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~v~~w~~aL~~v~~~~g~~~~~~~~e~~~i~~i~~~i~~~l 171 (709)
..|+-||-. ..++....+.---......++..+..|+. |.....-.|+..+ + |.. ++.-...+.+++
T Consensus 97 ~lil~iF~~--------ra~t~e~klqv~la~l~~~l~r~~~~~~~-l~~~~~~i~~~g~--g-E~~-~~~~~~~i~~ri 163 (351)
T TIGR03156 97 GLILDIFAQ--------RARTHEGKLQVELAQLKYLLPRLVGGWTH-LSRQGGGIGTRGP--G-ETQ-LETDRRLIRERI 163 (351)
T ss_pred HHHHHHHHH--------hccChHHHHHHHHHhccchhhhhhhhHHH-HHhhcCCCCCCCC--C-hhH-HHHHHHHHHHHH
Confidence 344555422 11122222222223333333456677877 6655544444322 1 111 111112222222
Q ss_pred hcccCCCCCCCCccccchhhhHHHhhhhc-----cCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 172 EKLSAAISDSDGLIGLESHVEQVRSLLAI-----GLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 172 ~~~~~~~~~~~~~vGR~~el~~L~~~L~~-----~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.. ...+++++.+.-.. ...+...|+|+|.+++|||||...+...
T Consensus 164 ~~-------------l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~ 212 (351)
T TIGR03156 164 AQ-------------LKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGA 212 (351)
T ss_pred HH-------------HHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 22 11223333222111 1134578999999999999999998864
No 417
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.99 E-value=0.068 Score=51.84 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.6
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
++++|.|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998854
No 418
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.98 E-value=0.44 Score=53.02 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=52.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCC-CC---CCCCCCh----
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGE-NF---DIGTPKI---- 275 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~-~~---~~~~~~~---- 275 (709)
..+.++|.|.+|+|||||+..++.....+.+..+.+..+++.. ....++.+.+...-... .. ...+...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~---rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 3578899999999999999999887665544444444444332 33445555554421110 00 0111111
Q ss_pred -----hHHHHHHH---ccCceEEEecCCCC
Q 005191 276 -----PQYIRDRL---QRMKVFIVLDDVNK 297 (709)
Q Consensus 276 -----~~~l~~~L---~~kr~LLVLDdv~~ 297 (709)
.-.+.+++ +++++||++|++-.
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 11234444 56899999999943
No 419
>PRK14530 adenylate kinase; Provisional
Probab=92.97 E-value=0.078 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.0
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.|.|.|++|+||||+|+.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 420
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.96 E-value=0.08 Score=52.56 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+++|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35789999999999999999998864
No 421
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.92 E-value=0.32 Score=54.21 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=51.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCC-CC---CCCCCCh----
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGE-NF---DIGTPKI---- 275 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~-~~---~~~~~~~---- 275 (709)
..+.++|.|.+|+|||+|+..+++....+....+.+..+++.. ....++...+...-... .. ...+...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~---rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERS---REGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcch---HHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 4578999999999999999999987764433333333343332 33444555444321100 00 1111111
Q ss_pred -----hHHHHHHH---ccCceEEEecCCC
Q 005191 276 -----PQYIRDRL---QRMKVFIVLDDVN 296 (709)
Q Consensus 276 -----~~~l~~~L---~~kr~LLVLDdv~ 296 (709)
.-.+.+++ .++++||++||+-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 11233444 3789999999994
No 422
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.92 E-value=0.12 Score=59.99 Aligned_cols=58 Identities=26% Similarity=0.341 Sum_probs=43.4
Q ss_pred CCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEEeee
Q 005191 181 SDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFMANV 242 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v~~~ 242 (709)
.+.++|.++.++.+...+... +.+.++|++|+||||+|+.+++.+... |...+++.+.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 456889998888888777633 356699999999999999999987554 3444555533
No 423
>PF13245 AAA_19: Part of AAA domain
Probab=92.91 E-value=0.15 Score=42.11 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=18.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.+++.|.|++|.|||+++......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467888999999999666555544
No 424
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.89 E-value=0.085 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+.+++.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998764
No 425
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=92.89 E-value=0.25 Score=55.86 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=38.6
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..++|+...+..+.+.+..-......+.|+|.+|+|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46999999998888877654445567889999999999999988775
No 426
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.88 E-value=0.43 Score=51.34 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=28.4
Q ss_pred hHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 192 EQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 192 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..|.++|..+-....++-|+|.+|+|||+|+..++-.
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 4455555544455789999999999999999988754
No 427
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.88 E-value=0.18 Score=53.70 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=28.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.+++...|.||+||||+|.+.+-...........++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999998888777664444443
No 428
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.88 E-value=0.11 Score=50.23 Aligned_cols=25 Identities=24% Similarity=0.386 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..++.|.|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999875
No 429
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.86 E-value=0.17 Score=53.40 Aligned_cols=56 Identities=27% Similarity=0.310 Sum_probs=41.9
Q ss_pred CCCCCccccchhhhH---HHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhccc
Q 005191 179 SDSDGLIGLESHVEQ---VRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE 234 (709)
Q Consensus 179 ~~~~~~vGR~~el~~---L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 234 (709)
...+.|||-.+..+. +.++..++.-..+.|.|.|++|.|||+||..+++.+-..-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 456789997654443 44555555445789999999999999999999998865533
No 430
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=92.84 E-value=0.26 Score=57.55 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....++|+|.+|.|||||++.+...
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999988753
No 431
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.82 E-value=0.43 Score=51.69 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=24.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh--hcccceEEEe
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS--QKFEGKYFMA 240 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~v~ 240 (709)
.+++.++|+.|+||||-...++.++. ..-..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 79999999999999955444544433 3334445554
No 432
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.81 E-value=0.08 Score=52.58 Aligned_cols=22 Identities=32% Similarity=0.123 Sum_probs=20.6
Q ss_pred eEEEEEccCCCchhHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
.+++|+|+.|.|||||.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999984
No 433
>PRK13946 shikimate kinase; Provisional
Probab=92.81 E-value=0.083 Score=51.65 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+.|.+.|++|+||||+++.+++++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999986
No 434
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.79 E-value=0.14 Score=51.15 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=25.6
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
.++++++++|..|+|||||..++.+....
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 47999999999999999999999887543
No 435
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.79 E-value=2.6 Score=44.23 Aligned_cols=126 Identities=8% Similarity=0.015 Sum_probs=68.9
Q ss_pred hHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc-------------ccceEEEeeecccccccCCHHHHHHH
Q 005191 192 EQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-------------FEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 192 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
+.|...+..+ .-.+...++|+.|+||+++|..++..+-.. .+...++...... ....+
T Consensus 7 ~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~--~~I~i------ 77 (290)
T PRK05917 7 EALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG--RLHSI------ 77 (290)
T ss_pred HHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC--CcCcH------
Confidence 3445555432 225788899999999999999999865321 2222222100000 00001
Q ss_pred HHHHhcCCCCCCCCCChhHHHHHHHc-----cCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch-hhhhhc
Q 005191 259 VLSKLLGENFDIGTPKIPQYIRDRLQ-----RMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK-TILERY 330 (709)
Q Consensus 259 ll~~l~~~~~~~~~~~~~~~l~~~L~-----~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~-~v~~~~ 330 (709)
+....+.+.+. ++.=++|+|+++. .+....++..+..-.+++.+|++|.+. .+++..
T Consensus 78 ---------------dqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 78 ---------------ETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred ---------------HHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHH
Confidence 11222223322 3445889999974 556777777776656677776666664 444332
Q ss_pred -CcceEEEecCC
Q 005191 331 -GTHRIYEVEGL 341 (709)
Q Consensus 331 -~~~~~~~L~~L 341 (709)
+.-..+.+.++
T Consensus 143 ~SRcq~~~~~~~ 154 (290)
T PRK05917 143 RSRSLSIHIPME 154 (290)
T ss_pred HhcceEEEccch
Confidence 22355666665
No 436
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.74 E-value=0.11 Score=55.20 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=43.8
Q ss_pred CCCccccchhhhHHHhhhhccC----CCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 181 SDGLIGLESHVEQVRSLLAIGL----PDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...|+|.++.++++.+.+.... ..-+++.+.|+.|.||||||..+.+-+.+.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 4579999999999999997533 347899999999999999999988866554
No 437
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=92.73 E-value=0.13 Score=50.94 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=45.8
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCC---hhHHH
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPK---IPQYI 279 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~---~~~~l 279 (709)
..+.++.|.|.+|.||||++..+...+. ....+.+. ........+....+.. .-..........+ +...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~-~D~~r~~~p~~~~~~~----~~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVID-ADEFRQFHPDYDELLK----ADPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE--GGGGGGGSTTHHHHHH----HHCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEe-hHHHHHhccchhhhhh----hhhhhhHHHHHHHHHHHHHHH
Confidence 4578899999999999999999877653 23334443 3322222122222222 1100000000000 44455
Q ss_pred HHHHccCceEEEecCCCC-hhhhhhhhcCC
Q 005191 280 RDRLQRMKVFIVLDDVNK-YGQLEYFDGGL 308 (709)
Q Consensus 280 ~~~L~~kr~LLVLDdv~~-~~~~~~l~~~l 308 (709)
.+....++.=+|+|..-. .+....+...+
T Consensus 86 ~~~a~~~~~nii~E~tl~~~~~~~~~~~~~ 115 (199)
T PF06414_consen 86 IEYAIENRYNIIFEGTLSNPSKLRKLIREA 115 (199)
T ss_dssp HHHHHHCT--EEEE--TTSSHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEecCCCChhHHHHHHHHH
Confidence 555566777888898743 34444344333
No 438
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.71 E-value=0.21 Score=52.92 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=26.1
Q ss_pred CCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 202 LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.....+++|.|++|+|||||+..+......+
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3457899999999999999999998866543
No 439
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.70 E-value=0.21 Score=56.34 Aligned_cols=91 Identities=21% Similarity=0.251 Sum_probs=49.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcc-cceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCC------hh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKF-EGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPK------IP 276 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~------~~ 276 (709)
.....+|+|++|+|||||++.+++.+..+. ++.+++..+.+-... +..+.+.+-..+-....+..... ..
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeE---Vtdm~rsVkgeVVasT~D~p~~~~~~~a~~a 491 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEE---VTDMQRSVKGEVIASTFDRPPSDHTTVAELA 491 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhh---HHHHHHhccceEEEECCCCCHHHHHHHHHHH
Confidence 346788999999999999999999775543 344455545443322 33333222111111111111100 11
Q ss_pred HHHHHHH--ccCceEEEecCCCC
Q 005191 277 QYIRDRL--QRMKVFIVLDDVNK 297 (709)
Q Consensus 277 ~~l~~~L--~~kr~LLVLDdv~~ 297 (709)
-.+.+++ .++.+||++|++-.
T Consensus 492 i~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCchH
Confidence 1223333 56899999999943
No 440
>PRK14527 adenylate kinase; Provisional
Probab=92.66 E-value=0.1 Score=51.35 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...++.|.|++|.||||+|+.+++++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 441
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=92.65 E-value=0.31 Score=58.17 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....++|+|.+|.|||||++.+..-
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999988753
No 442
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.64 E-value=0.21 Score=50.42 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=33.6
Q ss_pred HHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 194 VRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 194 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
|.+.|..+-+...++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44445444445789999999999999999999886544434555554
No 443
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=92.60 E-value=1.1 Score=48.34 Aligned_cols=54 Identities=17% Similarity=0.066 Sum_probs=35.2
Q ss_pred ceEEEecCCChHHHHHHhhhccc----ccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 333 HRIYEVEGLNCNEALRLFCSCAF----KENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 333 ~~~~~L~~L~~~ea~~Lf~~~a~----~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
..++++++.+.+|+.++..-+.- ....+. ++..+++.-..+|+|--++.+..++
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 35688999999999888654431 111121 3345677777899996666666554
No 444
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.60 E-value=0.14 Score=53.40 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=29.0
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
++++|+|.+|+|||||+..+...++.+. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988876 455554
No 445
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.59 E-value=0.32 Score=54.99 Aligned_cols=89 Identities=12% Similarity=0.070 Sum_probs=53.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ 284 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 284 (709)
..++.|+|+.|.||||+...+.+.+...-...+-+.+.-+..- .+. .+... ...........++..|+
T Consensus 242 ~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~--~~~--------~q~~v--~~~~g~~f~~~lr~~LR 309 (486)
T TIGR02533 242 HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI--EGI--------GQIQV--NPKIGLTFAAGLRAILR 309 (486)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec--CCC--------ceEEE--ccccCccHHHHHHHHHh
Confidence 3589999999999999999887776433222333321111100 000 01100 00011236678889999
Q ss_pred cCceEEEecCCCChhhhhhhh
Q 005191 285 RMKVFIVLDDVNKYGQLEYFD 305 (709)
Q Consensus 285 ~kr~LLVLDdv~~~~~~~~l~ 305 (709)
..+=.|++.++.+.+......
T Consensus 310 ~dPDvI~vGEiRd~eta~~a~ 330 (486)
T TIGR02533 310 QDPDIIMVGEIRDLETAQIAI 330 (486)
T ss_pred cCCCEEEEeCCCCHHHHHHHH
Confidence 999999999998887655443
No 446
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.58 E-value=0.089 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.+-|.|+|-||+|||||+.+++..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 345789999999999999999865
No 447
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.56 E-value=0.31 Score=52.12 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=34.7
Q ss_pred hHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc------cceEEEe
Q 005191 192 EQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF------EGKYFMA 240 (709)
Q Consensus 192 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~v~ 240 (709)
..+.++|..+-+...++-|+|++|+|||+|+.+++....... ...+|+.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 344455554445678999999999999999999987643221 2566766
No 448
>PRK14529 adenylate kinase; Provisional
Probab=92.56 E-value=0.37 Score=48.53 Aligned_cols=91 Identities=19% Similarity=0.132 Sum_probs=48.4
Q ss_pred EEEEccCCCchhHHHHHHHHHhhhc-ccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccC
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRM 286 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 286 (709)
|.|.|++|+||||+|+.++.++.-. ....-.+. +.......+....+.++.. ..-.++.-....+.+.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr---~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFR---EHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhh---hhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhcc
Confidence 7789999999999999998875322 21111111 1111102222223333221 11122222566677776442
Q ss_pred -ceEEEecCC-CChhhhhhhh
Q 005191 287 -KVFIVLDDV-NKYGQLEYFD 305 (709)
Q Consensus 287 -r~LLVLDdv-~~~~~~~~l~ 305 (709)
.-=+|||.. .+.+|.+.+.
T Consensus 76 ~~~g~iLDGfPRt~~Qa~~l~ 96 (223)
T PRK14529 76 GKNGWLLDGFPRNKVQAEKLW 96 (223)
T ss_pred CCCcEEEeCCCCCHHHHHHHH
Confidence 345899999 5566665553
No 449
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.13 Score=51.53 Aligned_cols=51 Identities=29% Similarity=0.483 Sum_probs=37.2
Q ss_pred CccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 183 GLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
..=|.+-..+++.+...- +-+.++-|.++|++|.|||.||+++++.....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 345666666666665431 224578899999999999999999999765544
No 450
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.54 E-value=0.19 Score=50.36 Aligned_cols=36 Identities=31% Similarity=0.350 Sum_probs=24.1
Q ss_pred hhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 190 HVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 190 el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+.+...+.. ..+..|+|++|.|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~----~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSS----NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTS----SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCCEEEECCCCCChHHHHHHHHHHh
Confidence 34455555542 2278899999999998888777766
No 451
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.53 E-value=0.093 Score=50.08 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=17.7
Q ss_pred EEEEccCCCchhHHHHHHHHH
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~ 228 (709)
|+|+|.+|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999876
No 452
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=0.63 Score=53.23 Aligned_cols=177 Identities=18% Similarity=0.208 Sum_probs=92.2
Q ss_pred CCCCccccchhhhHHHhhh---hccC-------CCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccccc
Q 005191 180 DSDGLIGLESHVEQVRSLL---AIGL-------PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKC 249 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L---~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~ 249 (709)
.....-|.++..+++.+.+ .... .=++-+.++|++|.|||.||++++-...-.| .. .|.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~----iSG-- 216 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----ISG-- 216 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----ee----ccc--
Confidence 4466788887666665544 3221 1267889999999999999999988643332 11 011
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh----------------hhhhhhhcCCCCCCC
Q 005191 250 GGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY----------------GQLEYFDGGLDRFGP 313 (709)
Q Consensus 250 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~----------------~~~~~l~~~l~~~~~ 313 (709)
.+..+ .. ...+.....+...+..++-++++++|.++.. ..+.+++.....++.
T Consensus 217 S~FVe-------mf----VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 217 SDFVE-------MF----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred hhhhh-------hh----cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 00011 00 0011111334444555667899999988521 234556655555553
Q ss_pred --CeEEEEEcCchhhhh-h----cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchH
Q 005191 314 --GSRIIVTTRDKTILE-R----YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLA 381 (709)
Q Consensus 314 --gsrIIvTTR~~~v~~-~----~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLA 381 (709)
|.-|+..|--++++. . -.-++.+.++..+...-.+.+.-++-.....+. .+ ...|++.+-|.-.|
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~--Vd-l~~iAr~tpGfsGA 357 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED--VD-LKKIARGTPGFSGA 357 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc--CC-HHHHhhhCCCcccc
Confidence 323333333333332 1 123456666666666666666655522221111 11 22377777776543
No 453
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.52 E-value=0.43 Score=52.94 Aligned_cols=91 Identities=16% Similarity=0.241 Sum_probs=52.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCC----CCCCCCh----
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENF----DIGTPKI---- 275 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~----~~~~~~~---- 275 (709)
..+.++|.|.+|+|||+|+..++.....+....+.+..+++.. ....++.+++...-..... ...+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~---rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCc---hHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 4578899999999999999999987655444444444444432 3345555555432110000 0111111
Q ss_pred -----hHHHHHHH---ccCceEEEecCCCC
Q 005191 276 -----PQYIRDRL---QRMKVFIVLDDVNK 297 (709)
Q Consensus 276 -----~~~l~~~L---~~kr~LLVLDdv~~ 297 (709)
.-.+.+++ +++++||++||+-.
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 11234445 45899999999943
No 454
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.47 E-value=0.38 Score=57.30 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....++|+|..|.|||||++.+..-
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999988753
No 455
>PRK13768 GTPase; Provisional
Probab=92.44 E-value=0.17 Score=52.30 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.4
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.++.|.|+||+||||++..+...+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 578899999999999999998876554
No 456
>PRK04182 cytidylate kinase; Provisional
Probab=92.43 E-value=0.1 Score=50.33 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.3
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999875
No 457
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=92.42 E-value=0.45 Score=56.78 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....++|+|+.|.|||||++.+..-
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999998764
No 458
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.38 E-value=0.11 Score=50.28 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...|.|.|+.|.|||||++.++..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3468999999999999999999875
No 459
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.37 E-value=0.11 Score=46.41 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEccCCCchhHHHHHHHHH
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~ 228 (709)
|.|.|.+|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 689999999999999999874
No 460
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.36 E-value=0.16 Score=51.65 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=29.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeee
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANV 242 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~ 242 (709)
.+..|.++||+|.||||..+.+...+..++.. .++.++
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNL 55 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINL 55 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeC
Confidence 46688889999999999999999888776544 344444
No 461
>PLN02200 adenylate kinase family protein
Probab=92.36 E-value=0.12 Score=52.67 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+.+|.|.|++|+||||+|+.+++.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35788999999999999999998764
No 462
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.36 E-value=0.11 Score=49.76 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.1
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+|+|.|++|+||||+|+.+.+++
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998864
No 463
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.36 E-value=0.16 Score=43.08 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=22.1
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
++.+.|.+|+||||++..++..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999998765
No 464
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.36 E-value=0.18 Score=53.43 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=26.6
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+++.+.|-||+||||+|...+-....+-.....++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 67899999999999999998887766533344443
No 465
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.34 E-value=0.27 Score=56.60 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....++|+|+.|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998753
No 466
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=92.32 E-value=0.27 Score=57.24 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....++|+|..|.|||||++.+...
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999998764
No 467
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.31 E-value=0.42 Score=54.48 Aligned_cols=61 Identities=25% Similarity=0.450 Sum_probs=37.5
Q ss_pred hHHHHHHHccCceEEEecCCCC---hhhhhhhhcCCCCCCCCeEEEEEcCchhhhhhcCcceEEEec
Q 005191 276 PQYIRDRLQRMKVFIVLDDVNK---YGQLEYFDGGLDRFGPGSRIIVTTRDKTILERYGTHRIYEVE 339 (709)
Q Consensus 276 ~~~l~~~L~~kr~LLVLDdv~~---~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~~~~~~~~L~ 339 (709)
.-.|.+.|-.++=+|+||.=-+ .+.+..+...+.. -+| .+||.|.++..+..+.. +++++.
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V~t-~I~~ld 224 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNVAT-HILELD 224 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHHhh-heEEec
Confidence 4456666778899999997632 3333333333322 345 79999999988776632 344443
No 468
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.28 E-value=0.15 Score=48.40 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.2
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
+++|+|+.|+|||||+..+...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999987665
No 469
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.26 E-value=0.11 Score=49.69 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=23.6
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
+-|.++||.|+||||+.+.+++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998765544
No 470
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=92.25 E-value=0.28 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.154 Sum_probs=20.2
Q ss_pred eEEEEEccCCCchhHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
++++|+|+.|.||||+.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.19 E-value=0.1 Score=51.06 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.2
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..++|.|++|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997754
No 472
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.18 E-value=0.42 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.7
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+.|.|.+|.|||++|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58899999999999999998764
No 473
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.17 E-value=0.53 Score=49.18 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
....++|+|..|.|||||.+.++.-+
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 45689999999999999999998754
No 474
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.12 E-value=0.2 Score=45.33 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=32.7
Q ss_pred Cccccch----hhhHHHhhhhcc-CCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 183 GLIGLES----HVEQVRSLLAIG-LPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 183 ~~vGR~~----el~~L~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+++|-.- -++.|.+.+... ++.+-|++.+|.+|+|||-+++.+++.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3555443 344444455432 3457899999999999999999998864
No 475
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=92.09 E-value=0.54 Score=52.99 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=37.0
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..++|....+.++.+.+.........+.|.|.+|+||+++|+.+...-
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~ 181 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS 181 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC
Confidence 458888888888877775433344567899999999999999887753
No 476
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=92.07 E-value=0.2 Score=48.71 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=32.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeee
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANV 242 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~ 242 (709)
...|.|-|++|+|||+|..+.++.++++|...+.-.++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di 50 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDI 50 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEecee
Confidence 47899999999999999999999999988776655433
No 477
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.07 E-value=0.21 Score=55.20 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=32.7
Q ss_pred CccccchhhhHHHhhhh-------cc-----C--CCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 183 GLIGLESHVEQVRSLLA-------IG-----L--PDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~-------~~-----~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.++|.+...+.+...+. .. + .....+.++|++|+|||+||+.++..+.
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46777776666643331 00 0 1135688999999999999999987653
No 478
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.06 E-value=0.16 Score=52.95 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=23.5
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
|.|+|+|-||+||||++..++.-+...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 468999999999999999999877654
No 479
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.05 E-value=0.33 Score=57.42 Aligned_cols=49 Identities=27% Similarity=0.267 Sum_probs=36.4
Q ss_pred hHHHhhhh-ccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 192 EQVRSLLA-IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 192 ~~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..|..+|. .+-+..+++-|+|++|+|||||+.+++......-...+|+.
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId 95 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID 95 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 34555565 34456789999999999999999998776555555667776
No 480
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.05 E-value=0.11 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEccCCCchhHHHHHHHHHh
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (709)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999998863
No 481
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=92.04 E-value=0.13 Score=50.36 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.+.+.|+|++|+|||||+..+.....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~ 27 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIP 27 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCC
Confidence 36899999999999999999988753
No 482
>PRK14532 adenylate kinase; Provisional
Probab=92.04 E-value=0.11 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.8
Q ss_pred EEEEccCCCchhHHHHHHHHHh
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~ 229 (709)
|.|.|++|+||||+|+.++++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998764
No 483
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.03 E-value=0.11 Score=54.07 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.+-+.++|++|+|||++++.+.....
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CCcEEEECCCCCchhHHHHhhhccCC
Confidence 46778999999999999999887543
No 484
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.02 E-value=0.15 Score=53.48 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=23.8
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
..+.+|+|.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999988766554
No 485
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.01 E-value=0.16 Score=57.73 Aligned_cols=32 Identities=38% Similarity=0.459 Sum_probs=26.2
Q ss_pred hhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 198 LAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 198 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+....++..+|+|.|++|.||||||+.+...+
T Consensus 58 L~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 58 LAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 33344567899999999999999999998764
No 486
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=0.33 Score=50.32 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=25.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
.+..++|||++|.|||-||+.++..+--+|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 367899999999999999999999875554
No 487
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=92.00 E-value=0.46 Score=50.74 Aligned_cols=45 Identities=13% Similarity=0.309 Sum_probs=36.0
Q ss_pred chhhhHHHhhhhccC-CCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 188 ESHVEQVRSLLAIGL-PDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 188 ~~el~~L~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
+.-.+.|.+.+...+ +...+|+|.|.=|+|||++.+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344566677776543 678999999999999999999999988776
No 488
>PLN02348 phosphoribulokinase
Probab=91.99 E-value=0.24 Score=53.74 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=26.2
Q ss_pred CCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 202 LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 202 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
.+...+|+|.|.+|.||||+|+.+.+.+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 346789999999999999999999988754
No 489
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.99 E-value=0.14 Score=51.45 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...+++|+|.+|+|||||++.++-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 457999999999999999999875
No 490
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.98 E-value=0.13 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=21.0
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+.|+|++|+||||+|+.+++++
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999875
No 491
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.95 E-value=1.4 Score=49.42 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=43.0
Q ss_pred cccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEEeeecccccccCCHHHHHHHHHHHh
Q 005191 185 IGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFMANVREESEKCGGLVHLRNQVLSKL 263 (709)
Q Consensus 185 vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l 263 (709)
.|-..-...|-+++. +-....++.|.|.+|+|||+++..++.....+ -..++|++ +. ....++...++...
T Consensus 176 ~gi~tG~~~LD~~~~-G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~S-lE------m~~~~i~~R~~~~~ 247 (434)
T TIGR00665 176 TGVPTGFTDLDKLTS-GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFS-LE------MSAEQLAMRMLSSE 247 (434)
T ss_pred CcccCCchhhHhhcC-CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEe-Cc------CCHHHHHHHHHHHh
Confidence 344444444544442 33346799999999999999999998875432 22344554 11 23445555555544
No 492
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.92 E-value=0.2 Score=49.05 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=22.7
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
+|+|.|+.|+||||+++.+++.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998754
No 493
>PRK06761 hypothetical protein; Provisional
Probab=91.91 E-value=0.18 Score=52.63 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=24.1
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
++|.|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 579999999999999999999987643
No 494
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.85 E-value=0.17 Score=47.80 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+++|+|.+|+||||+.+.+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999998877765
No 495
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.85 E-value=0.15 Score=44.90 Aligned_cols=23 Identities=39% Similarity=0.292 Sum_probs=20.4
Q ss_pred CceEEEEEccCCCchhHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVF 226 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~ 226 (709)
....++|.|++|.|||||+..+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34789999999999999999876
No 496
>PRK14531 adenylate kinase; Provisional
Probab=91.84 E-value=0.14 Score=49.98 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.2
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+.|.|.|++|.||||+++.++..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998874
No 497
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=91.84 E-value=0.38 Score=57.45 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....++|+|..|.|||||++.+..-
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998753
No 498
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=91.78 E-value=5.3 Score=41.96 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=42.5
Q ss_pred cCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch-hhhhhcC-cceEEEecCCChHHHHHHhh
Q 005191 285 RMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK-TILERYG-THRIYEVEGLNCNEALRLFC 351 (709)
Q Consensus 285 ~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~-~v~~~~~-~~~~~~L~~L~~~ea~~Lf~ 351 (709)
+++-++|+|+++. ....+.++..+..-.+++.+|++|.+. .+++... .-..+.+.+ +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 3556899999975 456777777776656667777777555 4444332 235667766 6666666664
No 499
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=91.78 E-value=0.14 Score=54.24 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.6
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+|.+.|++|+||||+|+.+.+++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998875
No 500
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=91.73 E-value=0.36 Score=54.97 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=69.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc---c--c---ceEEEeeeccc-c----------cccCC-HHHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK---F--E---GKYFMANVREE-S----------EKCGG-LVHLRNQVLSKL 263 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---f--~---~~~~v~~~~~~-~----------~~~~~-l~~l~~~ll~~l 263 (709)
....|+|+|+.|+|||||.+.+....... . . ...|+..-... . +.... ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 35689999999999999999996643222 0 0 11111111100 0 00001 023333444443
Q ss_pred cCCCC-------CCCCCC-hhHHHHHHHccCceEEEecCCC---ChhhhhhhhcCCCCCCCCeEEEEEcCchhhhhhcCc
Q 005191 264 LGENF-------DIGTPK-IPQYIRDRLQRMKVFIVLDDVN---KYGQLEYFDGGLDRFGPGSRIIVTTRDKTILERYGT 332 (709)
Q Consensus 264 ~~~~~-------~~~~~~-~~~~l~~~L~~kr~LLVLDdv~---~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~~~ 332 (709)
+-... ..+..+ ..-.+...+-.++-+||||.=- +.+..+.+...+..+ +| .||+.|.++.......
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va- 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVA- 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhc-
Confidence 21111 112222 3334555566789999999763 233334444333322 34 5888888888777664
Q ss_pred ceEEEecC
Q 005191 333 HRIYEVEG 340 (709)
Q Consensus 333 ~~~~~L~~ 340 (709)
.+++.+.+
T Consensus 504 ~~i~~~~~ 511 (530)
T COG0488 504 TRIWLVED 511 (530)
T ss_pred ceEEEEcC
Confidence 45666664
Done!